Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2664
Parameters: 2 7 7 80 10 50 1000
Length:  105428

Tables:   1   

This is table  1  of  1  ( 100 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4353--4403
3
16.7
3
87
4
75
0
3
33
62
1.13
4565--4593
2
15.0
2
92
7
51
51
0
0
48
1.00
5082--5127
18
2.4
19
82
10
58
52
0
0
47
1.00
5100--5165
33
2.1
32
82
5
80
39
1
0
59
1.07
6148--6273
8
15.6
8
69
20
59
56
1
0
41
1.14
6181--6224
22
2.0
22
91
8
72
56
0
0
43
0.99
6186--6252
15
4.6
14
77
17
66
55
2
0
41
1.15
6184--6273
22
3.9
22
72
18
67
56
2
1
40
1.19
7971--8004
5
6.8
5
89
0
50
11
5
0
82
0.83
7971--8004
10
3.4
10
95
0
59
11
5
0
82
0.83
7965--8004
15
2.6
15
88
4
53
10
7
0
82
0.84
9267--9327
24
2.6
25
82
12
83
59
0
1
39
1.08
9267--9327
23
2.6
23
87
7
79
59
0
1
39
1.08
9427--9479
17
3.2
16
81
7
61
54
0
1
43
1.11
9435--9470
17
2.1
17
94
0
63
52
0
0
47
1.00
10838--10877
3
13.3
3
100
0
80
67
0
0
32
0.91
12350--12379
2
15.0
2
92
0
51
53
0
46
0
1.00
12517--12541
11
2.3
11
100
0
50
56
0
0
44
0.99
12533--12569
19
2.1
19
85
10
51
48
0
0
51
1.00
14683--14807
18
6.6
18
72
17
60
38
1
0
59
1.13
14764--14807
18
2.4
18
96
0
79
40
4
0
54
1.21
14817--14865
17
2.9
17
78
0
53
28
2
2
67
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14818--14883
22
3.0
22
84
6
71
27
3
1
68
1.13
19546--19583
18
2.1
18
85
14
51
57
0
0
42
0.98
19764--19794
15
2.1
15
100
0
62
29
0
0
70
0.87
19942--20011
24
3.0
24
82
13
76
35
1
1
61
1.14
23862--24006
69
2.1
70
80
12
176
44
1
1
53
1.18
24108--24155
14
3.3
15
80
11
55
56
6
2
35
1.36
24465--24499
17
2.0
18
88
5
54
45
2
11
40
1.55
25039--25071
15
2.2
15
89
10
50
36
3
0
60
1.12
25456--25507
14
3.4
14
73
19
50
46
0
0
53
1.00
25643--25684
2
21.0
2
100
0
84
50
0
0
50
1.00
30249--30287
21
1.9
20
89
5
60
82
2
10
5
0.93
30171--30531
194
1.9
195
85
2
503
43
8
14
34
1.75
31672--31717
10
5.1
9
82
12
51
28
0
0
71
0.86
35114--35167
27
1.9
27
88
7
81
37
0
0
62
0.95
35135--35174
20
2.0
20
85
9
55
45
0
0
55
0.99
35185--35238
24
2.2
24
80
12
65
44
1
0
53
1.11
35688--35723
18
2.1
17
89
5
54
66
0
0
33
0.92
41522--41556
15
2.3
15
95
0
61
54
8
0
37
1.31
42201--42226
2
13.0
2
100
0
52
50
0
50
0
1.00
47045--47085
21
2.0
21
85
9
57
51
2
0
46
1.14
47052--47093
21
2.0
22
81
13
52
54
0
0
45
0.99
47076--47117
17
2.5
17
85
11
52
59
0
0
40
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47317--47341
9
2.8
9
100
0
50
56
0
0
44
0.99
47441--47508
16
4.0
17
68
11
50
44
0
0
55
0.99
47470--47502
11
2.8
12
86
9
50
45
0
0
54
0.99
48089--48169
37
2.2
38
82
12
105
56
1
0
41
1.07
48286--48350
31
2.1
31
91
2
103
50
0
0
49
1.00
49182--49215
17
2.0
18
88
11
54
41
0
2
55
1.15
49188--49229
20
2.0
21
86
4
59
40
0
0
59
0.97
49233--49268
19
1.9
19
88
5
56
36
0
0
63
0.94
49262--49328
17
3.5
18
78
17
64
52
0
0
47
1.00
51879--51921
22
2.0
22
86
9
61
67
0
0
32
0.91
52446--52528
23
3.6
22
72
16
78
44
0
0
55
0.99
52463--52501
14
2.8
14
84
11
53
46
0
0
53
1.00
55412--55446
14
2.6
14
90
4
54
45
0
0
54
0.99
56152--56206
20
3.0
19
80
12
62
52
0
0
47
1.00
56163--56207
20
2.3
19
84
3
63
48
0
0
51
1.00
56307--56340
12
3.1
11
88
12
52
70
0
2
26
1.01
59583--59730
5
29.8
5
64
20
53
37
0
3
59
1.14
59583--59644
29
2.1
30
85
8
83
35
0
3
61
1.12
59985--60037
28
1.9
28
84
3
72
64
0
3
32
1.12
60004--60048
16
2.9
16
76
3
56
64
0
0
35
0.94
60186--60234
16
3.1
16
76
5
55
51
0
0
48
1.00
60189--60241
16
3.3
16
74
7
54
52
0
0
47
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62006--62061
27
2.0
29
86
10
80
41
1
1
55
1.21
66451--66512
23
2.8
23
74
18
69
51
1
0
46
1.10
67122--67155
5
6.4
5
87
12
50
76
0
23
0
0.79
69372--69433
2
33.5
2
76
15
62
56
1
0
41
1.09
69372--69432
25
2.3
26
86
10
81
57
1
0
40
1.08
69553--69594
20
2.0
21
95
4
77
42
14
9
33
1.78
71022--71071
3
16.7
3
81
8
57
60
2
0
38
1.09
71199--71384
101
1.8
101
86
2
266
38
19
11
30
1.87
71392--71597
103
2.0
102
97
0
385
38
29
11
21
1.88
72271--72335
23
2.7
25
79
15
66
58
0
0
41
0.98
72300--72343
14
3.2
14
80
6
54
54
0
0
45
0.99
73496--73526
2
15.5
2
100
0
62
51
0
0
48
1.00
78084--78127
22
2.0
22
86
0
61
56
0
0
43
0.99
79191--79261
24
2.9
24
77
8
63
53
15
4
26
1.60
79231--79289
28
2.1
28
87
0
82
54
16
8
20
1.68
82669--82724
20
2.8
21
89
5
80
41
12
14
32
1.83
84918--84980
19
3.7
18
70
24
55
33
9
17
39
1.82
84916--84986
32
2.2
32
97
0
133
35
8
16
39
1.79
85010--85065
20
2.8
20
89
5
78
32
16
12
39
1.85
88463--88529
33
2.0
33
88
0
98
34
11
13
40
1.81
88483--88507
13
1.9
13
100
0
50
36
16
16
32
1.90
88603--88731
52
2.5
52
92
0
204
35
17
17
29
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93586--93610
13
1.9
13
100
0
50
32
16
16
36
1.90
93564--93630
33
2.0
33
85
0
89
41
13
10
34
1.79
94520--94664
49
3.0
48
83
8
168
31
15
25
27
1.95
94434--94661
48
4.8
46
77
13
207
32
16
23
27
1.96
94434--94661
97
2.4
92
83
8
273
32
16
23
27
1.96
94705--94993
59
4.9
59
75
10
203
25
16
28
29
1.97
94705--94993
30
9.7
30
79
9
263
25
16
28
29
1.97
96431--96549
1
119.0
1
77
0
112
0
0
10
88
0.61
96431--96550
18
6.4
18
82
10
136
0
0
10
87
0.63
96431--96546
37
3.2
36
87
7
164
0
0
10
87
0.62
96431--96549
47
2.6
45
88
6
175
0
0
10
88
0.61
96431--96547
36
3.2
35
84
8
153
0
0
10
88
0.62

Tables:   1

The End!