genome.fa.s2667.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2667
Parameters: 2 7 7 80 10 50 1000
Length:  55974

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1530--1571	20	2.0	21	86	4	59	9	28	42	19	1.82
2012--2051	13	3.0	13	85	3	53	35	15	15	35	1.88
2036--2090	20	2.7	20	91	2	83	47	14	14	23	1.81
2504--3021	263	2.0	263	100	0	1036	28	20	15	35	1.93
8412--8437	13	2.0	13	100	0	52	30	15	15	38	1.88
8835--9944	475	2.3	474	84	4	1473	30	19	13	36	1.91
9526--10381	437	2.0	438	82	4	1066	29	18	14	37	1.90
10704--10788	41	2.1	41	86	0	116	32	24	10	31	1.89
10224--11260	516	2.0	519	88	2	1523	31	18	13	36	1.90
10745--19096	476	17.6	477	82	3	9328	31	17	14	36	1.90
12416--19096	477	14.0	476	82	3	7351	31	17	14	36	1.90
19048--19143	47	2.0	47	93	0	165	29	12	22	35	1.91
19148--19820	337	2.0	337	94	1	1170	29	16	14	39	1.88
19911--20687	412	1.9	409	83	5	1005	29	17	15	37	1.91
20281--23559	478	6.9	476	84	3	3976	29	17	15	37	1.91
23219--23896	338	2.0	338	92	1	1144	29	16	14	39	1.88
23948--24763	412	2.0	409	83	4	1025	29	17	15	37	1.90
24357--26919	477	5.4	473	84	3	3130	29	18	15	36	1.91
27050--27708	336	2.0	336	88	1	998	30	17	14	37	1.90
27386--29146	477	3.7	475	83	2	2160	30	18	14	36	1.91
29216--37975	475	18.5	476	82	4	9453	31	18	13	36	1.89
37415--38765	586	2.3	570	84	4	1697	31	19	13	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38449--38673	112	2.0	112	94	0	396	30	21	14	33	1.93
38587--40851	159	14.3	158	66	13	453	32	18	13	35	1.90
38586--39443	158	5.4	157	68	11	453	32	18	13	35	1.90
38778--41268	476	5.2	476	85	3	3063	31	18	13	35	1.90
40930--41605	341	2.0	340	86	2	955	31	19	13	35	1.90
41271--43978	476	5.7	476	84	4	3311	31	18	13	35	1.90
43646--44321	341	2.0	340	86	2	946	31	19	13	35	1.90
43987--46049	476	4.3	472	84	4	2470	31	18	13	35	1.90
45701--46399	350	2.0	347	91	2	1143	30	19	13	36	1.90
46048--54874	476	18.6	476	83	4	9755	31	18	13	36	1.90
55184--55210	13	2.1	13	100	0	54	29	14	14	40	1.86
55165--55227	33	1.9	32	87	3	90	26	17	14	41	1.88
55294--55324	13	2.4	13	94	0	53	35	16	12	35	1.87
55278--55344	33	2.0	33	88	5	100	35	11	17	34	1.87

Tables:   1

The End!