Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold267
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2306539
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 499 characters in sequence are not A, C, G, or T
File 9 of 15
Found at i:1303153 original size:20 final size:20
Alignment explanation
Indices: 1303128--1303193 Score: 83
Period size: 20 Copynumber: 3.6 Consensus size: 20
1303118 ATCGATACAT
1303128 TGTATCGATACAACATTTTA
1 TGTATCGATACAACATTTTA
1303148 TGTATCGAT---ACA---T-
1 TGTATCGATACAACATTTTA
1303161 TGTATCGATACAACATTTTA
1 TGTATCGATACAACATTTTA
1303181 TGTATCGATACAA
1 TGTATCGATACAA
1303194 ATCGTTGAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
13 9 0.23
14 1 0.03
16 3 0.08
17 3 0.08
19 1 0.03
20 22 0.56
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (20 bp):
TGTATCGATACAACATTTTA
Found at i:1304066 original size:67 final size:68
Alignment explanation
Indices: 1303944--1304070 Score: 175
Period size: 67 Copynumber: 1.9 Consensus size: 68
1303934 ATTGGGTTTT
* * * *
1303944 AAAGATGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAGATG
1 AAAGATGATAAAGATGCCAATATGCTGATTCAAGACCAACAATATTGGACTTAAAGATGAAGATG
1304009 AGA
66 AGA
* * * *
1304012 AAAG-TGATAAAGATGCCAATATGTTGATTCACGACCAACGATATTGGGCTTAAAGATGA
1 AAAGATGATAAAGATGCCAATATGCTGATTCAAGACCAACAATATTGGACTTAAAGATGA
1304071 GAAAAAGGAT
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
67 47 0.92
68 4 0.08
ACGTcount: A:0.39, C:0.13, G:0.24, T:0.24
Consensus pattern (68 bp):
AAAGATGATAAAGATGCCAATATGCTGATTCAAGACCAACAATATTGGACTTAAAGATGAAGATG
AGA
Found at i:1304188 original size:43 final size:44
Alignment explanation
Indices: 1304126--1304315 Score: 220
Period size: 43 Copynumber: 4.1 Consensus size: 44
1304116 TTAAAGATGG
*
1304126 AAAAGGTGCCAATATGCTGATTTAAGGCCAGCTATATTGGACTT
1 AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* * *
1304170 -AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACACTGGACTT
1 AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
*
1304213 AAAGGTGAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
1 AAA----AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
1304261 AAAGATGAAGGTGCCAATATGTTGATTCAAGGCCAGCTATATTGGGCTT
1 --A-A--AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
*
1304310 AGAAGG
1 AAAAGG
1304316 GTTGCCACTG
Statistics
Matches: 126, Mismatches: 10, Indels: 20
0.81 0.06 0.13
Matches are distributed among these distances:
43 39 0.31
44 6 0.05
47 1 0.01
48 39 0.31
49 38 0.30
50 1 0.01
51 1 0.01
53 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.26
Consensus pattern (44 bp):
AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
Found at i:1304243 original size:48 final size:49
Alignment explanation
Indices: 1304083--1304310 Score: 281
Period size: 48 Copynumber: 4.7 Consensus size: 49
1304073 AAAAGGATGT
*
1304083 CAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGC
* * *
1304135 CAATATGCTGATTTAAGGCCAGCTATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
1304178 CAATGTGCTGATTCAAGGCCAGCTACACTGGACTTAAAGGTG-AGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
1304226 CAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * *
1304275 CAATATGTTGATTCAAGGCCAGCTATATTGGGCTTA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
1304311 GAAGGGTTGC
Statistics
Matches: 154, Mismatches: 15, Indels: 17
0.83 0.08 0.09
Matches are distributed among these distances:
43 38 0.25
48 46 0.30
49 39 0.25
52 31 0.20
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (49 bp):
CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
Found at i:1304256 original size:91 final size:94
Alignment explanation
Indices: 1304074--1304299 Score: 296
Period size: 91 Copynumber: 2.4 Consensus size: 94
1304064 AAGATGAGAA
* *
1304074 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCAAT
1 AAAGGATGCCAATGTGCTGATTCAAGGCCAGCTACACTGAACTTAAAGATGG--AAGGTGCCAAT
*
1304139 ATGCTGATTTAAGGCCAGCTATATTGGACTT
64 ATGCTGATTCAAGGCCAGCTATATTGGACTT
* * *
1304170 AAAGG-TGCCAATGTGCTGATTCAAGGCCAGCTACACTGGACTTAAAGGT-G-AGGTGCCAATGT
1 AAAGGATGCCAATGTGCTGATTCAAGGCCAGCTACACTGAACTTAAAGATGGAAGGTGCCAATAT
1304232 GCTGATTCAAGGCCAGCTATATTGGACTT
66 GCTGATTCAAGGCCAGCTATATTGGACTT
* *
1304261 AAAGATGAAGGTGCCAATATGTTGATTCAAGGCCAGCTA
1 AAAG--G-A--TGCCAATGTGCTGATTCAAGGCCAGCTA
1304300 TATTGGGCTT
Statistics
Matches: 116, Mismatches: 8, Indels: 11
0.86 0.06 0.08
Matches are distributed among these distances:
91 43 0.37
93 1 0.01
94 1 0.01
95 40 0.34
96 5 0.04
97 26 0.22
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (94 bp):
AAAGGATGCCAATGTGCTGATTCAAGGCCAGCTACACTGAACTTAAAGATGGAAGGTGCCAATAT
GCTGATTCAAGGCCAGCTATATTGGACTT
Found at i:1304383 original size:30 final size:30
Alignment explanation
Indices: 1304312--1304669 Score: 245
Period size: 30 Copynumber: 11.8 Consensus size: 30
1304302 TTGGGCTTAG
1304312 AAGGGTTGCCACTGACTTGTGTGGGC-TTT--A
1 AAGGG-TGCCACTGAC-T-TGTGGGCTTTTGAA
* *
1304342 GAGGTTGCCACTGACTTGTGGGCTTTTGAA
1 AAGGGTGCCACTGACTTGTGGGCTTTTGAA
* *
1304372 AAGGGTGCCACTAACTTGTGGGCTTAAAATGAAA
1 AAGGGTGCCACTGACTTGTGGGCTT---TTG-AA
* * * * **
1304406 AAGAGTGCTA-TAGAGTTGTGAGCTTACAAAAGAAA
1 AAGGGTGCCACT-GACTTGTGGGCTT----TTG-AA
* * * * *
1304441 AAGAGTGCCACAGAGTTGTGGACTTTGGAA
1 AAGGGTGCCACTGACTTGTGGGCTTTTGAA
* ** **
1304471 AA-GATGCCACCAACTTGTGGGCTTCGGAA
1 AAGGGTGCCACTGACTTGTGGGCTTTTGAA
*
1304500 AAGGGTGCCACTGATTTGTGGGC-TTTG--
1 AAGGGTGCCACTGACTTGTGGGCTTTTGAA
1304527 -AGGGTTGCCACTGACTTGTGGGCTTTTGAAA
1 AAGGG-TGCCACTGACTTGTGGGCTTTTG-AA
***
1304558 AAAAATGCCACTGACTTGTGGGC-TTTGAA
1 AAGGGTGCCACTGACTTGTGGGCTTTTGAA
* *
1304587 AAAGATGCCACTGACTTGTGGGCTTTT--A
1 AAGGGTGCCACTGACTTGTGGGCTTTTGAA
*
1304615 AAGGTTGCCACTGACTTGTGGGCTTTTGAA
1 AAGGGTGCCACTGACTTGTGGGCTTTTGAA
*
1304645 AAGGGTGCCACTAACTTGTGGGCTT
1 AAGGGTGCCACTGACTTGTGGGCTT
1304670 AAAAAGAAAA
Statistics
Matches: 267, Mismatches: 41, Indels: 40
0.77 0.12 0.11
Matches are distributed among these distances:
26 4 0.01
27 24 0.09
28 34 0.13
29 58 0.22
30 77 0.29
31 19 0.07
32 1 0.00
33 3 0.01
34 20 0.07
35 27 0.10
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.28
Consensus pattern (30 bp):
AAGGGTGCCACTGACTTGTGGGCTTTTGAA
Found at i:1304425 original size:34 final size:35
Alignment explanation
Indices: 1304370--1304461 Score: 107
Period size: 35 Copynumber: 2.7 Consensus size: 35
1304360 TGGGCTTTTG
* * *
1304370 AAAAGGGTGCCACTA-ACTTGTGGGCTTA-AAATGA
1 AAAAGAGTGCCAC-AGAGTTGTGGGCTTACAAAAGA
* * *
1304404 AAAAGAGTGCTATAGAGTTGTGAGCTTACAAAAGA
1 AAAAGAGTGCCACAGAGTTGTGGGCTTACAAAAGA
1304439 AAAAGAGTGCCACAGAGTTGTGG
1 AAAAGAGTGCCACAGAGTTGTGG
1304462 ACTTTGGAAA
Statistics
Matches: 47, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
33 1 0.02
34 21 0.45
35 25 0.53
ACGTcount: A:0.38, C:0.12, G:0.28, T:0.22
Consensus pattern (35 bp):
AAAAGAGTGCCACAGAGTTGTGGGCTTACAAAAGA
Found at i:1304611 original size:87 final size:87
Alignment explanation
Indices: 1304446--1304676 Score: 281
Period size: 88 Copynumber: 2.7 Consensus size: 87
1304436 AGAAAAAGAG
* * * * * * * *
1304446 TGCCACAGAGTTGTGGAC-TTTGGAAAAGATGCCACCAACTTGTGGGCTTCGGAAAAGGGTGCCA
1 TGCCACTGACTTGTGGGCTTTTGAAAAAGATGCCACTAACTTGTGGGCTT-TGAAAAAGATGCCA
* * *
1304510 CTGATTTGTGGGC-TTTGAGGGT
65 CTGACTTGTGGGCTTTTAAAGGT
* *
1304532 TGCCACTGACTTGTGGGCTTTTGAAAAAAAATGCCACTGACTTGTGGGCTTTGAAAAAGATGCCA
1 TGCCACTGACTTGTGGGCTTTTG-AAAAAGATGCCACTAACTTGTGGGCTTTGAAAAAGATGCCA
1304597 CTGACTTGTGGGCTTTTAAAGGT
65 CTGACTTGTGGGCTTTTAAAGGT
* *
1304620 TGCCACTGACTTGTGGGCTTTTGAAAAGGGTGCCACTAACTTGTGGGC-TT-AAAAAGA
1 TGCCACTGACTTGTGGGCTTTTGAAAAAGATGCCACTAACTTGTGGGCTTTGAAAAAGA
1304677 AAAAGAGTGC
Statistics
Matches: 125, Mismatches: 17, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
85 7 0.06
86 17 0.14
87 48 0.38
88 53 0.42
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (87 bp):
TGCCACTGACTTGTGGGCTTTTGAAAAAGATGCCACTAACTTGTGGGCTTTGAAAAAGATGCCAC
TGACTTGTGGGCTTTTAAAGGT
Found at i:1304706 original size:34 final size:32
Alignment explanation
Indices: 1304671--1305077 Score: 196
Period size: 33 Copynumber: 12.9 Consensus size: 32
1304661 TGTGGGCTTA
*
1304671 AAAAGAAAAAGAGTGCCACGGAGTCGTGGATTT
1 AAAAGAAAAAG-GTGCCACGGAGTTGTGGATTT
*
1304704 AAAAG-----GGTGCCACGGAGTTGTGGGCTTT
1 AAAAGAAAAAGGTGCCACGGAGTTGT-GGATTT
* * *
1304732 --AA-AAAGA-GTGCCACGGAGTCGTGGACTT
1 AAAAGAAAAAGGTGCCACGGAGTTGTGGATTT
* *
1304760 AAAAGGAAAAAGGGTGCCATGGAGTTGTGGGCTTT
1 AAAA-GAAAAA-GGTGCCACGGAGTTGT-GGATTT
* ** *
1304795 AAAGGAAAAAAGGGTGCCACGGAGTCATGGACTT
1 AAAAG-AAAAA-GGTGCCACGGAGTTGTGGATTT
*
1304829 AAAAG-----GGTGCCACGGAGTTGTGGGCTTT
1 AAAAGAAAAAGGTGCCACGGAGTTGT-GGATTT
* ** *
1304857 --AA-AAAGA-GTGCCACGGAGTCATGGACTT
1 AAAAGAAAAAGGTGCCACGGAGTTGTGGATTT
*
1304885 AAAAGGAAAAAGGGTGCCACGGAGTTGTGGGCTTT
1 AAAA-GAAAAA-GGTGCCACGGAGTTGT-GGATTT
* **
1304920 GAAAAG---AAGGTGCCATGGAGTTGTGGGCTT
1 -AAAAGAAAAAGGTGCCACGGAGTTGTGGATTT
* * *
1304950 AGAAGGAAAAAGAGTGCCACAGAGTTGTGGGCTTT
1 A-AAAGAAAAAG-GTGCCACGGAGTTGT-GGATTT
*
1304985 GAAAAG---GAGGTGCCACGGAGTTGTGGACTTT
1 -AAAAGAAAAAGGTGCCACGGAGTTGTGGA-TTT
* * *
1305016 GAAAGAAAAAGGTGCCACAGAGTCGTGGACTTT
1 AAAAGAAAAAGGTGCCACGGAGTTGTGGA-TTT
* * * * *
1305049 GAAAGAAAAAAGTGCTACAGAGTCGTGGA
1 AAAAGAAAAAGGTGCCACGGAGTTGTGGA
1305078 CTTTGATGCC
Statistics
Matches: 287, Mismatches: 48, Indels: 78
0.69 0.12 0.19
Matches are distributed among these distances:
26 4 0.01
27 28 0.10
28 18 0.06
29 28 0.10
30 17 0.06
31 32 0.11
32 12 0.04
33 57 0.20
34 48 0.17
35 38 0.13
36 5 0.02
ACGTcount: A:0.32, C:0.13, G:0.35, T:0.20
Consensus pattern (32 bp):
AAAAGAAAAAGGTGCCACGGAGTTGTGGATTT
Found at i:1304715 original size:27 final size:27
Alignment explanation
Indices: 1304677--1304890 Score: 122
Period size: 27 Copynumber: 7.2 Consensus size: 27
1304667 CTTAAAAAGA
*
1304677 AAAAGAGTGCCACGGAGTCGTGGATTT
1 AAAAGGGTGCCACGGAGTCGTGGATTT
* *
1304704 AAAAGGGTGCCACGGAGTTGTGGGCTTT
1 AAAAGGGTGCCACGGAGTCGT-GGATTT
* *
1304732 AAAAAGAGTGCCACGGAGTCGTGGACTTAAAAGGA
1 -AAAAGGGTGCCACGGAGTCGTGGA-TT------T
* * *
1304767 AAAAGGGTGCCATGGAGTTGTGGGCTTT
1 AAAAGGGTGCCACGGAGTCGT-GGATTT
* *
1304795 AAAGGAAAAAAGGGTGCCACGGAGTCATGGACTT
1 -------AAAAGGGTGCCACGGAGTCGTGGATTT
* *
1304829 AAAAGGGTGCCACGGAGTTGTGGGCTTT
1 AAAAGGGTGCCACGGAGTCGT-GGATTT
* * *
1304857 AAAAAGAGTGCCACGGAGTCATGGACTT
1 -AAAAGGGTGCCACGGAGTCGTGGATTT
1304885 AAAAGG
1 AAAAGG
1304891 AAAAAGGGTG
Statistics
Matches: 141, Mismatches: 27, Indels: 38
0.68 0.13 0.18
Matches are distributed among these distances:
27 43 0.30
28 15 0.11
29 39 0.28
34 24 0.17
35 20 0.14
ACGTcount: A:0.31, C:0.14, G:0.35, T:0.20
Consensus pattern (27 bp):
AAAAGGGTGCCACGGAGTCGTGGATTT
Found at i:1304746 original size:29 final size:29
Alignment explanation
Indices: 1304438--1305015 Score: 251
Period size: 29 Copynumber: 19.0 Consensus size: 29
1304428 CTTACAAAAG
* *
1304438 AAAAAGAGTGCCACAGAGTTGTGGACTTT
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTT
* ** * *
1304467 GGAAAAGA-TGCCACCAACTTGTGGGCTTCG
1 -AAAAAGAGTGCCACGGAGTTGTGGGCTT-T
* * * *
1304497 GAAAAGGGTGCCACTGATTTGTGGGCTTT
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTT
* * * *
1304526 ---GAGGGTTGCCACTGACTTGTGGGCTTTT
1 AAAAAGAG-TGCCACGGAGTTGTGGGC-TTT
* * * *
1304554 GAAAAAAAATGCCACTGACTTGTGGGCTTT
1 -AAAAAGAGTGCCACGGAGTTGTGGGCTTT
* *
1304584 GAAAAAGA-TGCCACTGACTTGTGGGCTTT
1 -AAAAAGAGTGCCACGGAGTTGTGGGCTTT
* * *
1304613 -TAAAG-GTTGCCACTGACTTGTGGGCTTTT
1 AAAAAGAG-TGCCACGGAGTTGTGGGC-TTT
* * ** * *
1304642 GAAAAGGGTGCCACTAACTTGTGGGCTTAAAAAG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTT-----T
* *
1304676 AAAAAGAGTGCCACGGAGTCGT-GGATTT
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTT
*
1304704 -AAAAGGGTGCCACGGAGTTGTGGGCTTT
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTT
* * *
1304732 AAAAAGAGTGCCACGGAGTCGTGGACTTAAAAGG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTT-----T
* *
1304766 AAAAAGGGTGCCATGGAGTTGTGGGCTTT
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTT
* ** *
1304795 AAAGGAAAAAAGGGTGCCACGGAGTCATGGAC-TT
1 ------AAAAAGAGTGCCACGGAGTTGTGGGCTTT
*
1304829 -AAAAGGGTGCCACGGAGTTGTGGGCTTT
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTT
** * *
1304857 AAAAAGAGTGCCACGGAGTCATGGACTTAAAAGG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTT-----T
*
1304891 AAAAAGGGTGCCACGGAGTTGTGGGCTTT
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTT
* * *
1304920 GAAAAGAAGGTGCCATGGAGTTGTGGGCTTAGAAGG
1 AAAAAG-A-GTGCCACGGAGTTGTGGGCTT-----T
*
1304956 AAAAAGAGTGCCACAGAGTTGTGGGCTTT
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTT
* *
1304985 GAAAAGGAGGTGCCACGGAGTTGTGGACTTT
1 -AAAAAGA-GTGCCACGGAGTTGTGGGCTTT
1305016 GAAAGAAAAA
Statistics
Matches: 431, Mismatches: 70, Indels: 93
0.73 0.12 0.16
Matches are distributed among these distances:
26 4 0.01
27 62 0.14
28 28 0.06
29 100 0.23
30 60 0.14
31 59 0.14
32 1 0.00
33 4 0.01
34 85 0.20
35 23 0.05
36 5 0.01
ACGTcount: A:0.29, C:0.15, G:0.33, T:0.24
Consensus pattern (29 bp):
AAAAAGAGTGCCACGGAGTTGTGGGCTTT
Found at i:1304777 original size:63 final size:64
Alignment explanation
Indices: 1304704--1305080 Score: 382
Period size: 65 Copynumber: 5.9 Consensus size: 64
1304694 TCGTGGATTT
1304704 AAAAGGGTGCCACGGAGTTGTGGGCTTT-AAAAAGAGTGCCACGGAGTCGTGGACTTAAAAGGA
1 AAAAGGGTGCCACGGAGTTGTGGGCTTTAAAAAAGAGTGCCACGGAGTCGTGGACTTAAAAGGA
* * *
1304767 AAAAGGGTGCCATGGAGTTGTGGGCTTTAAAGGAAAAAAGGGTGCCACGGAGTCATGGACTT---
1 AAAAGGGTGCCACGGAGTTGTGGGCTTT-----AAAAAAGAGTGCCACGGAGTCGTGGACTTAAA
1304829 ----
61 AGGA
*
1304829 AAAAGGGTGCCACGGAGTTGTGGGCTTT-AAAAAGAGTGCCACGGAGTCATGGACTTAAAAGGA
1 AAAAGGGTGCCACGGAGTTGTGGGCTTTAAAAAAGAGTGCCACGGAGTCGTGGACTTAAAAGGA
* * * *
1304892 AAAAGGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAG-GTGCCATGGAGTTGTGGGCTTAGAAGG
1 AAAAGGGTGCCACGGAGTTGTGGGCTTT-AAAA-AAGAGTGCCACGGAGTCGTGGACTTAAAAGG
1304956 A
64 A
* * * * * *
1304957 AAAAGAGTGCCACAGAGTTGTGGGCTTTGAAAAGGAGGTGCCACGGAGTTGTGGACTTTGAAA-G
1 AAAAGGGTGCCACGGAGTTGTGGGCTTTAAAAAAGA-GTGCCACGGAGTCGTGGAC-TTAAAAGG
1305021 A
64 A
* * * * * *
1305022 AAAA-GGTGCCACAGAGTCGTGGACTTTGAAAGAAAAAAGTGCTACAGAGTCGTGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGGCTTT--AA-AAAAGAGTGCCACGGAGTCGTGGACTT
1305081 TGATGCCACT
Statistics
Matches: 265, Mismatches: 27, Indels: 42
0.79 0.08 0.13
Matches are distributed among these distances:
56 27 0.10
62 27 0.10
63 57 0.22
64 23 0.09
65 77 0.29
66 24 0.09
67 4 0.02
69 26 0.10
ACGTcount: A:0.32, C:0.13, G:0.35, T:0.20
Consensus pattern (64 bp):
AAAAGGGTGCCACGGAGTTGTGGGCTTTAAAAAAGAGTGCCACGGAGTCGTGGACTTAAAAGGA
Found at i:1304831 original size:125 final size:124
Alignment explanation
Indices: 1304643--1305080 Score: 489
Period size: 125 Copynumber: 3.5 Consensus size: 124
1304633 TGGGCTTTTG
** * * * *
1304643 AAAAGGGTGCCACTAACTTGTGGGC-TTAAAAAGAAAAAGAGTGCCACGGAGTCGTGGATTTAAA
1 AAAAGGGTGCCACGGAGTTGTGGGCTTTAAAGA-AAAAAGGGTGCCACGGAGTCGTGGACTTAAA
1304707 AGGGTGCCACGGAGTTGTGGGCTTTAAAAAGAGTGCCACGGAGTCGTGGACTTAAAAGGA
65 AGGGTGCCACGGAGTTGTGGGCTTTAAAAAGAGTGCCACGGAGTCGTGGACTTAAAAGGA
* *
1304767 AAAAGGGTGCCATGGAGTTGTGGGCTTTAAAGGAAAAAAGGGTGCCACGGAGTCATGGACTTAAA
1 AAAAGGGTGCCACGGAGTTGTGGGCTTTAAA-GAAAAAAGGGTGCCACGGAGTCGTGGACTTAAA
*
1304832 AGGGTGCCACGGAGTTGTGGGCTTTAAAAAGAGTGCCACGGAGTCATGGACTTAAAAGGA
65 AGGGTGCCACGGAGTTGTGGGCTTTAAAAAGAGTGCCACGGAGTCGTGGACTTAAAAGGA
* * *
1304892 AAAAGGGTGCCACGGAGTTGTGGGCTTT---GAAAAGAA-GGTGCCATGGAGTTGTGGGCTTAGA
1 AAAAGGGTGCCACGGAGTTGTGGGCTTTAAAGAAAA-AAGGGTGCCACGGAGTCGTGGACTT---
* * * * *
1304953 AGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTGAAAAGGAGGTGCCACGGAGTTGTGGACTTTGA
62 ----AAAAGGGTGCCACGGAGTTGTGGGCTTT-AAAAAGA-GTGCCACGGAGTCGTGGAC-TTAA
1305018 AA-GA
120 AAGGA
* * * * *
1305022 AAAA-GGTGCCACAGAGTCGTGGACTTTGAAAGAAAAAA--GTGCTACAGAGTCGTGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGGCTTT-AAAGAAAAAAGGGTGCCACGGAGTCGTGGACTT
1305081 TGATGCCACT
Statistics
Matches: 269, Mismatches: 28, Indels: 27
0.83 0.09 0.08
Matches are distributed among these distances:
121 23 0.09
122 2 0.01
124 21 0.08
125 119 0.44
126 1 0.00
128 26 0.10
129 26 0.10
130 23 0.09
131 21 0.08
132 2 0.01
133 5 0.02
ACGTcount: A:0.32, C:0.13, G:0.34, T:0.21
Consensus pattern (124 bp):
AAAAGGGTGCCACGGAGTTGTGGGCTTTAAAGAAAAAAGGGTGCCACGGAGTCGTGGACTTAAAA
GGGTGCCACGGAGTTGTGGGCTTTAAAAAGAGTGCCACGGAGTCGTGGACTTAAAAGGA
Found at i:1304847 original size:62 final size:56
Alignment explanation
Indices: 1304767--1304940 Score: 177
Period size: 63 Copynumber: 2.8 Consensus size: 56
1304757 CTTAAAAGGA
* *
1304767 AAAAGGGTGCCATGGAGTTGTGGGCTTTAAAGGAAAAAAGGGTGCCACGGAGTCATGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGGCTTT------AAAAAGAGTGCCACGGAGTCATGGACTT
1304829 AAAAGGGTGCCACGGAGTTGTGGGCTTTAAAAAGAGTGCCACGGAGTCATGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGGCTTTAAAAAGAGTGCCACGGAGTCATGGACTT
* *
1304885 AAAAGGAAAAAGGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAGGTGCCATGGAGT
1 -------AAAAGGGTGCCACGGAGTTGTGGGCTTTAAAAAG-A-GTGCCACGGAGT
1304941 TGTGGGCTTA
Statistics
Matches: 99, Mismatches: 4, Indels: 15
0.84 0.03 0.13
Matches are distributed among these distances:
56 27 0.27
62 27 0.27
63 33 0.33
64 1 0.01
65 11 0.11
ACGTcount: A:0.31, C:0.13, G:0.36, T:0.20
Consensus pattern (56 bp):
AAAAGGGTGCCACGGAGTTGTGGGCTTTAAAAAGAGTGCCACGGAGTCATGGACTT
Found at i:1305187 original size:31 final size:30
Alignment explanation
Indices: 1305082--1305348 Score: 206
Period size: 31 Copynumber: 8.8 Consensus size: 30
1305072 CGTGGACTTT
* *
1305082 GATGCCACTGAGTCGTGGAC-TT-AAAAGG
1 GATGCCACTGAGTCGTGGACTTTGAGAAGA
* * *
1305110 GATGCCACTGAATTGTGGACTTTTAGGACA-A
1 GATGCCACTGAGTCGTGGACTTTGA-GA-AGA
* * *
1305141 AACGCCACTGAGTCGTGGGCTTTGAGAAGA
1 GATGCCACTGAGTCGTGGACTTTGAGAAGA
* * *
1305171 GATTGCCATTGAGTCGTAGACTTTAAGAAAGA
1 GA-TGCCACTGAGTCGTGGACTTTGAG-AAGA
* *
1305203 GATGCCACTGAAT-TTGGGACTTT-AGGACA-A
1 GATGCCACTGAGTCGT-GGACTTTGA-GA-AGA
* * * * *
1305233 AATGCCATTGATTCGTGGGCTTTGAAGAAAA
1 GATGCCACTGAGTCGTGGACTTTG-AGAAGA
*
1305264 GGATGCCACTAAGTCGTGGACTTTGAGACA-A
1 -GATGCCACTGAGTCGTGGACTTTGAGA-AGA
*
1305295 AATGCCACTGAGTCGTGGACTTTGAGAAGA
1 GATGCCACTGAGTCGTGGACTTTGAGAAGA
1305325 GATTGCCACTGAGTCGTGGACTTT
1 GA-TGCCACTGAGTCGTGGACTTT
1305349 AAAAAGGTAT
Statistics
Matches: 188, Mismatches: 33, Indels: 33
0.74 0.13 0.13
Matches are distributed among these distances:
28 18 0.10
29 4 0.02
30 53 0.28
31 85 0.45
32 28 0.15
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (30 bp):
GATGCCACTGAGTCGTGGACTTTGAGAAGA
Found at i:1305271 original size:93 final size:91
Alignment explanation
Indices: 1305082--1305317 Score: 277
Period size: 93 Copynumber: 2.6 Consensus size: 91
1305072 CGTGGACTTT
*
1305082 GATGCCACTGAGTCGTGGAC-TTA-AAAGGGATGCCACTGAATTGTGGACTTTTAGGACAAAACG
1 GATGCCACTGAGTCGTGGACTTTAGAAAGAGATGCCACTGAATTGTGGACTTTTAGGACAAAACG
*
1305145 CCACTGAGTCGTGGGCTTTGAGAAGA
66 CCACTGAGTCGTGGGCTTTGAGAAAA
* *
1305171 GATTGCCATTGAGTCGTAGACTTTAAGAAAGAGATGCCACTGAATT-TGGGAC-TTTAGGACAAA
1 GA-TGCCACTGAGTCGTGGACTTT-AGAAAGAGATGCCACTGAATTGT-GGACTTTTAGGACAAA
* * *
1305234 ATGCCATTGATTCGTGGGCTTTGAAGAAAA
63 ACGCCACTGAGTCGTGGGCTTTG-AGAAAA
* * *
1305264 GGATGCCACTAAGTCGTGGACTTTGAGACAA-A-ATGCCACTGAGTCGTGGACTTT
1 -GATGCCACTGAGTCGTGGACTTT-AGA-AAGAGATGCCACTGAATTGTGGACTTT
1305318 GAGAAGAGAT
Statistics
Matches: 124, Mismatches: 13, Indels: 16
0.81 0.08 0.10
Matches are distributed among these distances:
89 2 0.02
90 16 0.13
91 2 0.02
92 48 0.39
93 52 0.42
94 4 0.03
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (91 bp):
GATGCCACTGAGTCGTGGACTTTAGAAAGAGATGCCACTGAATTGTGGACTTTTAGGACAAAACG
CCACTGAGTCGTGGGCTTTGAGAAAA
Found at i:1305315 original size:92 final size:91
Alignment explanation
Indices: 1305084--1305317 Score: 246
Period size: 92 Copynumber: 2.6 Consensus size: 91
1305074 TGGACTTTGA
* * *
1305084 TGCCACTGAGTCGTGGAC-TT-A-AAAGGGATGCCACTGAATTGTGGACTTTTAGGACAAAACGC
1 TGCCACTAAGTCGTAGACTTTAAGAAAGAGATGCCACTGAA-TGTGGAC-TTTAGGACAAAACGC
*
1305146 CACTGAGTCGTGGGCTTTGAGAAGAGAT
64 CACTGAGTCGTGGGCTTTGAGAAAAGAT
* * * *
1305174 TGCCATTGAGTCGTAGACTTTAAGAAAGAGATGCCACTGAATTTGGGACTTTAGGACAAAATGCC
1 TGCCACTAAGTCGTAGACTTTAAGAAAGAGATGCCACTGAATGT-GGACTTTAGGACAAAACGCC
* *
1305239 ATTGATTCGTGGGCTTTGAAGAAAAGGA-
65 ACTGAGTCGTGGGCTTTG-AGAAAA-GAT
* * *
1305267 TGCCACTAAGTCGTGGACTTTGAGACAA-A-ATGCCACTGAGTCGTGGACTTT
1 TGCCACTAAGTCGTAGACTTTAAGA-AAGAGATGCCACTGAAT-GTGGACTTT
1305318 GAGAAGAGAT
Statistics
Matches: 122, Mismatches: 14, Indels: 14
0.81 0.09 0.09
Matches are distributed among these distances:
90 16 0.13
91 2 0.02
92 52 0.43
93 48 0.39
94 4 0.03
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (91 bp):
TGCCACTAAGTCGTAGACTTTAAGAAAGAGATGCCACTGAATGTGGACTTTAGGACAAAACGCCA
CTGAGTCGTGGGCTTTGAGAAAAGAT
Found at i:1313518 original size:52 final size:52
Alignment explanation
Indices: 1313433--1313557 Score: 214
Period size: 52 Copynumber: 2.4 Consensus size: 52
1313423 ATATGAAAAG
* *
1313433 TTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
*
1313485 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
*
1313537 TTTCCTGCATGTATCGATACA
1 TTGCCTGCATGTATCGATACA
1313558 AAGATCAGTG
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 69 1.00
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.37
Consensus pattern (52 bp):
TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
Found at i:1313570 original size:52 final size:51
Alignment explanation
Indices: 1313433--1313578 Score: 204
Period size: 52 Copynumber: 2.8 Consensus size: 51
1313423 ATATGAAAAG
*
1313433 TTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAAT
* *
1313485 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAAT
* *
1313537 TTTCCTGCATGTATCGATACA-AAGATCAGTGTATCGATACAT
1 TTGCCTGCATGTATCGATACATTA-AT-AGTGTATCGATACAT
1313579 TTTTTGGCAG
Statistics
Matches: 85, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
51 2 0.02
52 83 0.98
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (51 bp):
TTGCCTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAAT
Found at i:1313637 original size:13 final size:13
Alignment explanation
Indices: 1313619--1313643 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1313609 TAAAAAAATA
1313619 TGTATCGATACAT
1 TGTATCGATACAT
1313632 TGTATCGATACA
1 TGTATCGATACA
1313644 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1321467 original size:5 final size:5
Alignment explanation
Indices: 1321457--1321527 Score: 65
Period size: 5 Copynumber: 14.0 Consensus size: 5
1321447 GATTATATTT
* * * *
1321457 ATATA ATATA A-ATA A-ATA ATTAAA ATATA ATATA AAATA ATATA TTTTA
1 ATATA ATATA ATATA ATATA A-TATA ATATA ATATA ATATA ATATA ATATA
1321506 ATATAA ATATA ATATAA ATATA
1 ATAT-A ATATA ATAT-A ATATA
1321528 TTAAAATATT
Statistics
Matches: 54, Mismatches: 8, Indels: 8
0.77 0.11 0.11
Matches are distributed among these distances:
4 8 0.15
5 33 0.61
6 13 0.24
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
ATATA
Found at i:1321582 original size:30 final size:33
Alignment explanation
Indices: 1321512--1321583 Score: 98
Period size: 30 Copynumber: 2.3 Consensus size: 33
1321502 TTTAATATAA
1321512 ATATAATATAAATATATTAAAATATTAAAATTT
1 ATATAATATAAATATATTAAAATATTAAAATTT
*
1321545 ATGTAATA-AAAT-TATTAAAA-ATT-AAATTAT
1 ATATAATATAAATATATTAAAATATTAAAATT-T
1321575 ATATAATAT
1 ATATAATAT
1321584 TTTTAATAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
29 5 0.14
30 11 0.31
31 8 0.23
32 4 0.11
33 7 0.20
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.42
Consensus pattern (33 bp):
ATATAATATAAATATATTAAAATATTAAAATTT
Found at i:1322097 original size:17 final size:17
Alignment explanation
Indices: 1322077--1322110 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
1322067 TGAAAAAATA
*
1322077 AAATTATTTATATTTTT
1 AAATTATTTAAATTTTT
*
1322094 AAATTTTTTAAATTTTT
1 AAATTATTTAAATTTTT
1322111 TTATTTTATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (17 bp):
AAATTATTTAAATTTTT
Found at i:1325793 original size:21 final size:21
Alignment explanation
Indices: 1325767--1325810 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
1325757 GTTATATCTC
1325767 TATCTAGTCTTTCCCTAACAT
1 TATCTAGTCTTTCCCTAACAT
1325788 TATCTAGTCTTTCCCTAACAT
1 TATCTAGTCTTTCCCTAACAT
1325809 TA
1 TA
1325811 ATACTTTCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.25, C:0.27, G:0.05, T:0.43
Consensus pattern (21 bp):
TATCTAGTCTTTCCCTAACAT
Found at i:1330720 original size:15 final size:14
Alignment explanation
Indices: 1330690--1330748 Score: 52
Period size: 14 Copynumber: 4.2 Consensus size: 14
1330680 AGAAAAATTT
1330690 AAAATTA-ATATCAA
1 AAAATTATATAT-AA
*
1330704 AATATTATATATAA
1 AAAATTATATATAA
*
1330718 AAAAATAT-TATAGCA
1 AAAATTATATATA--A
1330733 AAAATTATAT-TAA
1 AAAATTATATATAA
1330746 AAA
1 AAA
1330749 TTTAATTTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
13 8 0.22
14 14 0.38
15 14 0.38
16 1 0.03
ACGTcount: A:0.63, C:0.03, G:0.02, T:0.32
Consensus pattern (14 bp):
AAAATTATATATAA
Found at i:1330808 original size:29 final size:29
Alignment explanation
Indices: 1330744--1330814 Score: 117
Period size: 29 Copynumber: 2.5 Consensus size: 29
1330734 AAATTATATT
1330744 AAAAATTTAATTTATAATGCCTTATGTAA
1 AAAAATTTAATTTATAATGCCTTATGTAA
**
1330773 AGGAATTTAATTTATAATGCCTTATGTAA
1 AAAAATTTAATTTATAATGCCTTATGTAA
1330802 AAAAA-TTAATTTA
1 AAAAATTTAATTTA
1330815 CAAAAATAAG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
28 8 0.21
29 30 0.79
ACGTcount: A:0.45, C:0.06, G:0.08, T:0.41
Consensus pattern (29 bp):
AAAAATTTAATTTATAATGCCTTATGTAA
Found at i:1331947 original size:19 final size:20
Alignment explanation
Indices: 1331923--1331977 Score: 85
Period size: 19 Copynumber: 2.8 Consensus size: 20
1331913 GTATCGATAT
1331923 ATTGTATCGATACATGCTC-
1 ATTGTATCGATACATGCTCA
* *
1331942 ATTGTATTGATACATACTCA
1 ATTGTATCGATACATGCTCA
1331962 ATTGTATCGATACATG
1 ATTGTATCGATACATG
1331978 AAACTGACAG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 17 0.55
20 14 0.45
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.38
Consensus pattern (20 bp):
ATTGTATCGATACATGCTCA
Found at i:1334159 original size:21 final size:22
Alignment explanation
Indices: 1334135--1334178 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
1334125 GAAATTCTTG
* *
1334135 AAAAGAAAATTGTC-AAACTAA
1 AAAAGAAAACTCTCTAAACTAA
*
1334156 AAAAGGAAACTCTCTAAACTAA
1 AAAAGAAAACTCTCTAAACTAA
1334178 A
1 A
1334179 TGATGAACAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.59, C:0.14, G:0.09, T:0.18
Consensus pattern (22 bp):
AAAAGAAAACTCTCTAAACTAA
Found at i:1337848 original size:13 final size:13
Alignment explanation
Indices: 1337830--1337855 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1337820 CAATTTTTTG
1337830 TGTATCGATACAT
1 TGTATCGATACAT
1337843 TGTATCGATACAT
1 TGTATCGATACAT
1337856 ATTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1337870 original size:32 final size:33
Alignment explanation
Indices: 1337810--1337873 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
1337800 TACAAGCCAA
* *
1337810 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATATTTGGTGTATCGATACAT
1337843 TGTATCGATAC-ATATTTGGTGTATCGATACA
1 TGTATCGATACAATATTTGGTGTATCGATACA
1337874 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.12, G:0.17, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATATTTGGTGTATCGATACAT
Found at i:1338578 original size:21 final size:21
Alignment explanation
Indices: 1338535--1338580 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
1338525 TAATTCACGC
* *
1338535 ATTCTCCCCCGTTTATTAATA
1 ATTCTCCCCCGTTAATCAATA
1338556 ATTCTCCCCC-TTAATCAAGTA
1 ATTCTCCCCCGTTAATCAA-TA
1338577 ATTC
1 ATTC
1338581 ATATCAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 6 0.27
21 16 0.73
ACGTcount: A:0.26, C:0.30, G:0.04, T:0.39
Consensus pattern (21 bp):
ATTCTCCCCCGTTAATCAATA
Found at i:1340404 original size:13 final size:13
Alignment explanation
Indices: 1340386--1340411 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1340376 ATAATCACCC
1340386 TGTATCGATACAA
1 TGTATCGATACAA
1340399 TGTATCGATACAA
1 TGTATCGATACAA
1340412 AGAAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1343571 original size:52 final size:52
Alignment explanation
Indices: 1343501--1343621 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
1343491 GAAAATTTAT
*
1343501 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
*
1343553 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
1343605 CTGCATGTATCGATACA
1 CTGCATGTATCGATACA
1343622 AAGATCAGTG
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
Found at i:1343634 original size:52 final size:51
Alignment explanation
Indices: 1343501--1343641 Score: 212
Period size: 52 Copynumber: 2.7 Consensus size: 51
1343491 GAAAATTTAT
1343501 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
* *
1343553 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
*
1343605 CTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 CTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
1343642 ATGTATCGAT
Statistics
Matches: 82, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
51 2 0.02
52 80 0.98
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33
Consensus pattern (51 bp):
CTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:1343648 original size:13 final size:13
Alignment explanation
Indices: 1343630--1343654 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1343620 CAAAGATCAG
1343630 TGTATCGATACAA
1 TGTATCGATACAA
1343643 TGTATCGATACA
1 TGTATCGATACA
1343655 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1343738 original size:13 final size:13
Alignment explanation
Indices: 1343720--1343744 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1343710 CAAAAAAATA
1343720 TGTATCGATACAT
1 TGTATCGATACAT
1343733 TGTATCGATACA
1 TGTATCGATACA
1343745 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1343740 original size:33 final size:33
Alignment explanation
Indices: 1343698--1343764 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
1343688 AGTAGCTTAA
1343698 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
1343731 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
1343764 A
1 A
1343765 GATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:1344681 original size:67 final size:68
Alignment explanation
Indices: 1344557--1344683 Score: 175
Period size: 67 Copynumber: 1.9 Consensus size: 68
1344547 ATTGGGTTTT
* * *
1344557 AAAGATGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAGATG
1 AAAGATGATCAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGAAGATG
1344622 AGA
66 AGA
* * * * *
1344625 AAAG-TGATCAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCTTGAAGATGA
1 AAAGATGATCAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGA
1344684 GAAAAAGGAT
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
67 47 0.92
68 4 0.08
ACGTcount: A:0.37, C:0.13, G:0.26, T:0.24
Consensus pattern (68 bp):
AAAGATGATCAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGAAGATG
AGA
Found at i:1344755 original size:171 final size:171
Alignment explanation
Indices: 1344563--1344957 Score: 664
Period size: 171 Copynumber: 2.3 Consensus size: 171
1344553 TTTTAAAGAT
*
1344563 GATGAAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAGATGAGAAAA
1 GATGAAGATGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAGATGAGAAAA
* *
1344628 GTGATCAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCTTGAAGATGAGAAAAAGGA
66 GTGATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGGA
* *
1344693 TGTCAATGTGCTGATTCAAGGCTAGCTACATTGAACTTAAA
131 TGTCAACGTGCTGATTCAAGGCCAGCTACATTGAACTTAAA
* * * *
1344734 GATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAAATGATGATGAGAAGA
1 GATGAAGATGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAGATGAGAAAA
1344799 GTGATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGGA
66 GTGATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGGA
1344864 TGTCAACGTGCTGATTCAAGGCCAGCTACATTGAACTTAAA
131 TGTCAACGTGCTGATTCAAGGCCAGCTACATTGAACTTAAA
* *
1344905 GATGGAAAATGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAG
1 GAT-GAAGA--TGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAG
1344958 GTGCCAATGT
Statistics
Matches: 209, Mismatches: 12, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
171 165 0.79
172 4 0.02
174 40 0.19
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (171 bp):
GATGAAGATGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAGATGAGAAAA
GTGATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGGA
TGTCAACGTGCTGATTCAAGGCCAGCTACATTGAACTTAAA
Found at i:1344758 original size:49 final size:49
Alignment explanation
Indices: 1344691--1344792 Score: 132
Period size: 49 Copynumber: 2.1 Consensus size: 49
1344681 TGAGAAAAAG
* * * * *
1344691 GATGTCAATGTGCTGATTCAAGGCTAGCTACATTGAACTTAAAGATGAA
1 GATGCCAATATGCTGATTCAAGGCCAGCGACATTGAACTTAAAAATGAA
* * *
1344740 GATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAAATGAT
1 GATGCCAATATGCTGATTCAAGGCCAGCGACATTGAACTTAAAAATGAA
1344789 GATG
1 GATG
1344793 AGAAGAGTGA
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.27
Consensus pattern (49 bp):
GATGCCAATATGCTGATTCAAGGCCAGCGACATTGAACTTAAAAATGAA
Found at i:1344958 original size:22 final size:22
Alignment explanation
Indices: 1344933--1345001 Score: 54
Period size: 22 Copynumber: 3.2 Consensus size: 22
1344923 ATGCTGATTC
1344933 AAGGCCAGCTATATTGGACTTA
1 AAGGCCAGCTATATTGGACTTA
* * * *
1344955 AAGGTGCCA-ATGTGTT-GA-TTC
1 AA-G-GCCAGCTATATTGGACTTA
*
1344976 AAGGCCAGCTACATTGGACTTA
1 AAGGCCAGCTATATTGGACTTA
1344998 AAGG
1 AAGG
1345002 TGAAGGTGCC
Statistics
Matches: 33, Mismatches: 9, Indels: 10
0.63 0.17 0.19
Matches are distributed among these distances:
19 4 0.12
20 4 0.12
21 6 0.18
22 10 0.30
23 5 0.15
24 4 0.12
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (22 bp):
AAGGCCAGCTATATTGGACTTA
Found at i:1345011 original size:49 final size:49
Alignment explanation
Indices: 1344872--1345371 Score: 580
Period size: 49 Copynumber: 10.6 Consensus size: 49
1344862 GATGTCAACG
* *
1344872 TGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAATGTGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGCCAATA
* *
1344924 TGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
* * *
1344967 TGTTGATTCAAGGCCAGCTACATTGGACTTAAAGGTGAAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
* * *
1345016 TGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGATGATGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
* * *
1345065 TGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
*
1345108 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
* * *
1345157 TGCTGATTCAGGGCCAGCTATATTGGACTT----A--AAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
*
1345200 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
* * * *
1345249 TGCTGATTCAGGGCCAGCTATATTGGGCTT----A--AAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
*
1345292 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
* *
1345341 TGCTGATTCAAGGCCAGCTATATTGGGCTTA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTA
1345372 GAAGGGTTGC
Statistics
Matches: 381, Mismatches: 43, Indels: 51
0.80 0.09 0.11
Matches are distributed among these distances:
43 150 0.39
45 3 0.01
47 3 0.01
48 1 0.00
49 196 0.51
52 28 0.07
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.26
Consensus pattern (49 bp):
TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
Found at i:1345041 original size:92 final size:91
Alignment explanation
Indices: 1344915--1345376 Score: 691
Period size: 92 Copynumber: 5.0 Consensus size: 91
1344905 GATGGAAAAT
* * * *
1344915 GTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT-AA-A-G-G-TGCCAATGTGTTGATT
1 GTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAGATGCCAATATGCTGATT
*
1344975 CAAGGCCAGCTACATTGGACTTAAAGGTGAAG
66 CAAGGCCAGCTATATTGGACTT--A----AAG
*
1345007 GTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGATGATGCCAATATGCTGAT
1 GTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGA-GATGCCAATATGCTGAT
*
1345072 TCAAGGCCAGCGATATTGGACTTAAAG
65 TCAAGGCCAGCTATATTGGACTTAAAG
1345099 GTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGAT
1 GTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG-AGATGCCAATATGCTGAT
*
1345164 TCAGGGCCAGCTATATTGGACTTAAAG
65 TCAAGGCCAGCTATATTGGACTTAAAG
1345191 GTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGAT
1 GTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG-AGATGCCAATATGCTGAT
* *
1345256 TCAGGGCCAGCTATATTGGGCTTAAAG
65 TCAAGGCCAGCTATATTGGACTTAAAG
1345283 GTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGAT
1 GTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG-AGATGCCAATATGCTGAT
*
1345348 TCAAGGCCAGCTATATTGGGCTTAGAAG
65 TCAAGGCCAGCTATATTGGACTTA-AAG
1345376 G
1 G
1345377 GTTGCCACCG
Statistics
Matches: 350, Mismatches: 12, Indels: 15
0.93 0.03 0.04
Matches are distributed among these distances:
92 305 0.87
93 7 0.02
94 1 0.00
95 1 0.00
96 1 0.00
97 1 0.00
98 34 0.10
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (91 bp):
GTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAGATGCCAATATGCTGATT
CAAGGCCAGCTATATTGGACTTAAAG
Found at i:1345398 original size:30 final size:32
Alignment explanation
Indices: 1345364--1345438 Score: 118
Period size: 33 Copynumber: 2.4 Consensus size: 32
1345354 CCAGCTATAT
1345364 TGGGC-TTAGAAG-GGTTGCCACCGACTTGTG
1 TGGGCTTTAGAAGAGGTTGCCACCGACTTGTG
*
1345394 TGGGCTTTGGAAGAAGGTTGCCACCGACTTGTG
1 TGGGCTTTAGAAG-AGGTTGCCACCGACTTGTG
1345427 TGGGCTTTAGAA
1 TGGGCTTTAGAA
1345439 AGGGAGAAAG
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
30 5 0.12
31 6 0.15
33 29 0.73
ACGTcount: A:0.19, C:0.17, G:0.36, T:0.28
Consensus pattern (32 bp):
TGGGCTTTAGAAGAGGTTGCCACCGACTTGTG
Found at i:1345415 original size:33 final size:34
Alignment explanation
Indices: 1345371--1345434 Score: 121
Period size: 33 Copynumber: 1.9 Consensus size: 34
1345361 TATTGGGCTT
1345371 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTGGA
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTGGA
1345405 AGAA-GGTTGCCACCGACTTGTGTGGGCTTT
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTT
1345435 AGAAAGGGAG
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 26 0.87
34 4 0.13
ACGTcount: A:0.17, C:0.19, G:0.36, T:0.28
Consensus pattern (34 bp):
AGAAGGGTTGCCACCGACTTGTGTGGGCTTTGGA
Found at i:1345464 original size:38 final size:36
Alignment explanation
Indices: 1345425--1345997 Score: 427
Period size: 34 Copynumber: 17.2 Consensus size: 36
1345415 CACCGACTTG
*
1345425 TGTGGGCTTTAGAAAGGGAGAAAGA-TGCCACGGAGT
1 TGTGGGCTTTA-AAAGGGAAAAAGAGTGCCACGGAGT
*
1345461 TGTGGAC-TTAAAAGGGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
* *
1345496 TGTGGGCTTTAAAA-GAAAAAAAAGGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGA-GTGCCACGGAGT
* * *
1345532 TATGGAC-TT-AAAGATGAAAAA-AGTGCCACGGAGT
1 TGTGGGCTTTAAAAG-GGAAAAAGAGTGCCACGGAGT
*
1345566 TATGGGC-TTAAAA--G-----GA-TGCCACGGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
*
1345593 TGTGGGC-TTAGAA-GGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
* * *
1345627 CGTGGGCTTTGAAAA--GAAGAAG-GTGCCACAGAGT
1 TGTGGGCTTT-AAAAGGGAAAAAGAGTGCCACGGAGT
* *
1345661 TGTGGGCTTTGAAAA--GAAGAAG-GTGCCACAGAGT
1 TGTGGGCTTT-AAAAGGGAAAAAGAGTGCCACGGAGT
*
1345695 TGTGGGCTTTGAAAA--GAAGAAG-GTGCCACGGAGT
1 TGTGGGCTTT-AAAAGGGAAAAAGAGTGCCACGGAGT
1345729 TGTGGGCTTT---------AAAGAGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
* * *
1345756 CGTGGGCTTTGAAAAGAGAAAAAGAGTGCCATGGAGT
1 TGTGGGCTTT-AAAAGGGAAAAAGAGTGCCACGGAGT
1345793 TGTGGGCTTTAAACA--GAAAAAG-GTGCCACGGAGT
1 TGTGGGCTTTAAA-AGGGAAAAAGAGTGCCACGGAGT
1345827 TGTGGGCTTT------G---AAGAGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
* * *
1345854 CGTGGGCTTTGAAAAGAGAAAAAGAGTGCCATGGAGT
1 TGTGGGCTTT-AAAAGGGAAAAAGAGTGCCACGGAGT
1345891 TGTGGGCTTTAAACA--GAAAAAG-GTGCCACGGAGT
1 TGTGGGCTTTAAA-AGGGAAAAAGAGTGCCACGGAGT
1345925 TGTGGGCTTT------G---AAGAGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
* *
1345952 CGTGGGCTTTGAAAAGAGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTT-AAAAGGGAAAAAGAGTGCCACGGAGT
1345989 TGTGGGCTT
1 TGTGGGCTT
1345998 AAAGATGAGG
Statistics
Matches: 457, Mismatches: 29, Indels: 101
0.78 0.05 0.17
Matches are distributed among these distances:
26 9 0.02
27 85 0.19
28 2 0.00
29 2 0.00
32 1 0.00
33 2 0.00
34 183 0.40
35 55 0.12
36 43 0.09
37 75 0.16
ACGTcount: A:0.31, C:0.13, G:0.35, T:0.21
Consensus pattern (36 bp):
TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
Found at i:1345483 original size:34 final size:33
Alignment explanation
Indices: 1345445--1346123 Score: 392
Period size: 34 Copynumber: 20.9 Consensus size: 33
1345435 AGAAAGGGAG
* *
1345445 AAAGATGCCACGGAGTTGTGGACTTAAAAGGGAA
1 AAAGATGCCACGGAGTTGTGGGCTTAAAA-AGAA
*
1345479 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAAAA
1 AAAGA-TGCCACGGAGTTGTGGGC-TT-AAA-AAGAA
* * * *
1345516 AAAGGTGCCACGGAGTTATGGACTTAAAGATGAA
1 AAAGATGCCACGGAGTTGTGGGCTTAAA-AAGAA
*
1345550 AAA-AGTGCCACGGAGTTATGGGCTT-AAAAG--
1 AAAGA-TGCCACGGAGTTGTGGGCTTAAAAAGAA
* *
1345580 ---GATGCCACGGAGTTGTGGGCTTAGAAGGAA
1 AAAGATGCCACGGAGTTGTGGGCTTAAAAAGAA
* *
1345610 AAAGAGTGCCACGGAGTCGTGGGCTTTGAAAAGAA
1 AAAGA-TGCCACGGAGTTGTGGGC-TTAAAAAGAA
* * * *
1345645 GAAGGTGCCACAGAGTTGTGGGCTTTGAAAAGAA
1 AAAGATGCCACGGAGTTGTGGGC-TTAAAAAGAA
* * * *
1345679 GAAGGTGCCACAGAGTTGTGGGCTTTGAAAAGAA
1 AAAGATGCCACGGAGTTGTGGGC-TTAAAAAGAA
* * *
1345713 GAAGGTGCCACGGAGTTGTGGGCTT-TAAAG--
1 AAAGATGCCACGGAGTTGTGGGCTTAAAAAGAA
*
1345743 --AG-TGCCACGGAGTCGTGGGCTTTGAAAAGAGAA
1 AAAGATGCCACGGAGTTGTGGGC-TT-AAAA-AGAA
* *
1345776 AAAGAGTGCCATGGAGTTGTGGGCTTTAAACAGAA
1 AAAGA-TGCCACGGAGTTGTGGGC-TTAAAAAGAA
* *
1345811 AAAGGTGCCACGGAGTTGTGGGCTT----TG-A
1 AAAGATGCCACGGAGTTGTGGGCTTAAAAAGAA
* *
1345839 AGAG-TGCCACGGAGTCGTGGGCTTTGAAAAGAGAA
1 AAAGATGCCACGGAGTTGTGGGC-TT-AAAA-AGAA
* *
1345874 AAAGAGTGCCATGGAGTTGTGGGCTTTAAACAGAA
1 AAAGA-TGCCACGGAGTTGTGGGC-TTAAAAAGAA
* *
1345909 AAAGGTGCCACGGAGTTGTGGGCTT----TG-A
1 AAAGATGCCACGGAGTTGTGGGCTTAAAAAGAA
* *
1345937 AGAG-TGCCACGGAGTCGTGGGCTTTGAAAAGAGAA
1 AAAGATGCCACGGAGTTGTGGGC-TT-AAAA-AGAA
1345972 AAAGAGTGCCACGGAGTTGTGGGCTT--AAAG-A
1 AAAGA-TGCCACGGAGTTGTGGGCTTAAAAAGAA
** * *
1346003 TGAGGTGCCACGGAATTGTGGGCTGT-AAAAG--
1 AAAGATGCCACGGAGTTGTGGGCT-TAAAAAGAA
* *
1346034 ---GGTGCCACGGAGTTGTGGACTT--AAAG-A
1 AAAGATGCCACGGAGTTGTGGGCTTAAAAAGAA
** * * *
1346061 TGAGGTGCCACGGAATTGTGGGCTT-TAAAGAA
1 AAAGATGCCACGGAGTTGTGGGCTTAAAAAGAA
* * *
1346093 AAA-ATGCCACTGAGTCGTGGACGTTAAAAAG
1 AAAGATGCCACGGAGTTGTGGGC-TTAAAAAG
1346124 GTATTTGAAG
Statistics
Matches: 528, Mismatches: 63, Indels: 109
0.75 0.09 0.16
Matches are distributed among these distances:
26 4 0.01
27 71 0.13
28 39 0.07
29 2 0.00
30 40 0.08
31 24 0.05
32 16 0.03
33 16 0.03
34 170 0.32
35 55 0.10
36 26 0.05
37 64 0.12
38 1 0.00
ACGTcount: A:0.32, C:0.13, G:0.35, T:0.21
Consensus pattern (33 bp):
AAAGATGCCACGGAGTTGTGGGCTTAAAAAGAA
Found at i:1345586 original size:27 final size:27
Alignment explanation
Indices: 1345555--1345608 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
1345545 ATGAAAAAAG
1345555 TGCCACGGAGTTATGGGCTTAAAAGGA
1 TGCCACGGAGTTATGGGCTTAAAAGGA
* *
1345582 TGCCACGGAGTTGTGGGCTTAGAAGGA
1 TGCCACGGAGTTATGGGCTTAAAAGGA
1345609 AAAAGAGTGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.26, C:0.15, G:0.37, T:0.22
Consensus pattern (27 bp):
TGCCACGGAGTTATGGGCTTAAAAGGA
Found at i:1345590 original size:61 final size:60
Alignment explanation
Indices: 1345515--1345635 Score: 165
Period size: 61 Copynumber: 2.0 Consensus size: 60
1345505 TAAAAGAAAA
*
1345515 AAAAGGTGCCACGGAGTTATGGACTTA-AAGATGAAAAA-AGTGCCACGGAGTTATGGGCTT
1 AAAAGGTGCCACGGAGTTATGGACTTAGAAG--GAAAAAGAGTGCCACGGAGTCATGGGCTT
* * *
1345575 AAAAGGATGCCACGGAGTTGTGGGCTTAGAAGGAAAAAGAGTGCCACGGAGTCGTGGGCTT
1 AAAAGG-TGCCACGGAGTTATGGACTTAGAAGGAAAAAGAGTGCCACGGAGTCATGGGCTT
1345636 TGAAAAGAAG
Statistics
Matches: 54, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
60 12 0.22
61 39 0.72
62 3 0.06
ACGTcount: A:0.32, C:0.14, G:0.34, T:0.20
Consensus pattern (60 bp):
AAAAGGTGCCACGGAGTTATGGACTTAGAAGGAAAAAGAGTGCCACGGAGTCATGGGCTT
Found at i:1345817 original size:98 final size:97
Alignment explanation
Indices: 1345582--1346051 Score: 621
Period size: 98 Copynumber: 4.8 Consensus size: 97
1345572 CTTAAAAGGA
* *
1345582 TGCCACGGAGTTGTGGGC-TTAGAAGGAAAAAGAGTGCCACGGAGTCGTGGGCTTTGAAAAGAAG
1 TGCCACGGAGTTGTGGGCTTTA-AAAGAAAAAG-GTGCCACGGAGTTGTGGGCTTT----A-AAG
* * *
1345646 AAGGTGCCACAGAGTTGTGGGCTTTG-AAA-AGAAGAAG-G
59 -A-GTGCCACGGAGTCGTGGGCTTTGAAAAGAGAAAAAGAG
* *
1345684 TGCCACAGAGTTGTGGGCTTTGAAAAGAAGAAGGTGCCACGGAGTTGTGGGCTTTAAAGAGTGCC
1 TGCCACGGAGTTGTGGGCTTT-AAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAGAGTGCC
1345749 ACGGAGTCGTGGGCTTTGAAAAGAGAAAAAGAG
65 ACGGAGTCGTGGGCTTTGAAAAGAGAAAAAGAG
* *
1345782 TGCCATGGAGTTGTGGGCTTTAAACAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAGAGTGCC
1 TGCCACGGAGTTGTGGGCTTTAAA-AGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAGAGTGCC
1345847 ACGGAGTCGTGGGCTTTGAAAAGAGAAAAAGAG
65 ACGGAGTCGTGGGCTTTGAAAAGAGAAAAAGAG
* *
1345880 TGCCATGGAGTTGTGGGCTTTAAACAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAGAGTGCC
1 TGCCACGGAGTTGTGGGCTTTAAA-AGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAGAGTGCC
1345945 ACGGAGTCGTGGGCTTTGAAAAGAGAAAAAGAG
65 ACGGAGTCGTGGGCTTTGAAAAGAGAAAAAGAG
** * * *
1345978 TGCCACGGAGTTGTGGGC-TT-AAAG-ATGAGGTGCCACGGAATTGTGGGCTGTAAAAGGGTGCC
1 TGCCACGGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCT-TTAAAGAGTGCC
*
1346040 ACGGAGTTGTGG
65 ACGGAGTCGTGG
1346052 ACTTAAAGAT
Statistics
Matches: 342, Mismatches: 19, Indels: 21
0.90 0.05 0.05
Matches are distributed among these distances:
94 22 0.06
95 43 0.13
96 6 0.02
97 15 0.04
98 207 0.61
102 38 0.11
103 10 0.03
104 1 0.00
ACGTcount: A:0.29, C:0.13, G:0.37, T:0.21
Consensus pattern (97 bp):
TGCCACGGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAGAGTGCCA
CGGAGTCGTGGGCTTTGAAAAGAGAAAAAGAG
Found at i:1345853 original size:27 final size:27
Alignment explanation
Indices: 1345815--1345866 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
1345805 ACAGAAAAAG
*
1345815 GTGCCACGGAGTTGTGGGCTTTGAAGA
1 GTGCCACGGAGTCGTGGGCTTTGAAGA
1345842 GTGCCACGGAGTCGTGGGCTTTGAA
1 GTGCCACGGAGTCGTGGGCTTTGAA
1345867 AAGAGAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.17, C:0.17, G:0.40, T:0.25
Consensus pattern (27 bp):
GTGCCACGGAGTCGTGGGCTTTGAAGA
Found at i:1345951 original size:27 final size:27
Alignment explanation
Indices: 1345913--1345964 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
1345903 ACAGAAAAAG
*
1345913 GTGCCACGGAGTTGTGGGCTTTGAAGA
1 GTGCCACGGAGTCGTGGGCTTTGAAGA
1345940 GTGCCACGGAGTCGTGGGCTTTGAA
1 GTGCCACGGAGTCGTGGGCTTTGAA
1345965 AAGAGAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.17, C:0.17, G:0.40, T:0.25
Consensus pattern (27 bp):
GTGCCACGGAGTCGTGGGCTTTGAAGA
Found at i:1346013 original size:30 final size:30
Alignment explanation
Indices: 1345977--1346091 Score: 164
Period size: 30 Copynumber: 3.9 Consensus size: 30
1345967 GAGAAAAAGA
*
1345977 GTGCCACGGAGTTGTGGGCTTAAAGATGAG
1 GTGCCACGGAATTGTGGGCTTAAAGATGAG
1346007 GTGCCACGGAATTGTGGGCTGTAAA-A-G-G
1 GTGCCACGGAATTGTGGGCT-TAAAGATGAG
* *
1346035 GTGCCACGGAGTTGTGGACTTAAAGATGAG
1 GTGCCACGGAATTGTGGGCTTAAAGATGAG
1346065 GTGCCACGGAATTGTGGGCTTTAAAGA
1 GTGCCACGGAATTGTGGGC-TTAAAGA
1346092 AAAAATGCCA
Statistics
Matches: 75, Mismatches: 5, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
27 4 0.05
28 20 0.27
29 2 0.03
30 38 0.51
31 11 0.15
ACGTcount: A:0.25, C:0.14, G:0.37, T:0.23
Consensus pattern (30 bp):
GTGCCACGGAATTGTGGGCTTAAAGATGAG
Found at i:1346061 original size:58 final size:58
Alignment explanation
Indices: 1345971--1346089 Score: 211
Period size: 58 Copynumber: 2.1 Consensus size: 58
1345961 TGAAAAGAGA
*
1345971 AAAAGAGTGCCACGGAGTTGTGGGCTTAAAGATGAGGTGCCACGGAATTGTGGGCTGT
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAGATGAGGTGCCACGGAATTGTGGGCTGT
* *
1346029 AAAAGGGTGCCACGGAGTTGTGGACTTAAAGATGAGGTGCCACGGAATTGTGGGCTTT
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAGATGAGGTGCCACGGAATTGTGGGCTGT
1346087 AAA
1 AAA
1346090 GAAAAAATGC
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.28, C:0.13, G:0.36, T:0.23
Consensus pattern (58 bp):
AAAAGAGTGCCACGGAGTTGTGGACTTAAAGATGAGGTGCCACGGAATTGTGGGCTGT
Found at i:1347066 original size:1 final size:1
Alignment explanation
Indices: 1347062--1347089 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
1347052 GGTTTTTCCC
1347062 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
1347090 GTGAAGAGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:1347152 original size:16 final size:16
Alignment explanation
Indices: 1347131--1347172 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
1347121 CTCACCGAGA
*
1347131 TTTTCTGTTTTGTTTT
1 TTTTCTGTTTTCTTTT
*
1347147 TTTTCTTTTTTCTTTT
1 TTTTCTGTTTTCTTTT
*
1347163 TTTTGTGTTT
1 TTTTCTGTTT
1347173 GGAAAAGAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.00, C:0.07, G:0.10, T:0.83
Consensus pattern (16 bp):
TTTTCTGTTTTCTTTT
Found at i:1351312 original size:21 final size:21
Alignment explanation
Indices: 1351283--1351327 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
1351273 AAGTTTTTAT
*
1351283 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
1351303 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
1351325 TTT
1 TTT
1351328 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:1355011 original size:13 final size:13
Alignment explanation
Indices: 1354993--1355029 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
1354983 AGGATCTTTG
1354993 TATCGATACATTA
1 TATCGATACATTA
* *
1355006 TATCGATACACTG
1 TATCGATACATTA
1355019 TATCGATACAT
1 TATCGATACAT
1355030 GGGTACTATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.35
Consensus pattern (13 bp):
TATCGATACATTA
Found at i:1355014 original size:33 final size:33
Alignment explanation
Indices: 1354940--1355015 Score: 116
Period size: 33 Copynumber: 2.3 Consensus size: 33
1354930 TTTTCAGATG
* *
1354940 TATCGATACAAGGATTTTTGTATCGATACATTG
1 TATCGATACAAGGATCTTTGTATCGATACATTA
* *
1354973 CATAGATACAAGGATCTTTGTATCGATACATTA
1 TATCGATACAAGGATCTTTGTATCGATACATTA
1355006 TATCGATACA
1 TATCGATACA
1355016 CTGTATCGAT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36
Consensus pattern (33 bp):
TATCGATACAAGGATCTTTGTATCGATACATTA
Found at i:1357571 original size:20 final size:20
Alignment explanation
Indices: 1357548--1357589 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
1357538 ACACATCCAG
*
1357548 ATGTATTGTATCGATACATT
1 ATGTATTGTATCAATACATT
1357568 ATGTATTGTATCAATACATT
1 ATGTATTGTATCAATACATT
1357588 AT
1 AT
1357590 ATTGATACAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.33, C:0.10, G:0.12, T:0.45
Consensus pattern (20 bp):
ATGTATTGTATCAATACATT
Found at i:1357615 original size:19 final size:20
Alignment explanation
Indices: 1357593--1357639 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
1357583 ACATTATATT
1357593 GATACATGCTCA-TTGTATC
1 GATACATGCTCAGTTGTATC
*
1357612 GATACATACTCAGTTGTATC
1 GATACATGCTCAGTTGTATC
*
1357632 AATACATG
1 GATACATG
1357640 AAACTGACAG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
19 11 0.46
20 13 0.54
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.34
Consensus pattern (20 bp):
GATACATGCTCAGTTGTATC
Found at i:1359337 original size:56 final size:56
Alignment explanation
Indices: 1359252--1359358 Score: 144
Period size: 56 Copynumber: 1.9 Consensus size: 56
1359242 GTTGTTGTAC
1359252 TTTCAACTAAAGCTAAACCAATTAACTACTCTTTA-GCTTTCTCATATAAGTTTCAA
1 TTTCAACTAAAGCTAAACCAATTAACTACTC-TTAGGCTTTCTCATATAAGTTTCAA
* * * * * *
1359308 TTTCAATTAGAGCTAAACCTATTAGCTACTCTTAGGCTTTCTGATCTAAGT
1 TTTCAACTAAAGCTAAACCAATTAACTACTCTTAGGCTTTCTCATATAAGT
1359359 CCTCATAAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
55 3 0.07
56 41 0.93
ACGTcount: A:0.32, C:0.21, G:0.09, T:0.38
Consensus pattern (56 bp):
TTTCAACTAAAGCTAAACCAATTAACTACTCTTAGGCTTTCTCATATAAGTTTCAA
Found at i:1362389 original size:78 final size:78
Alignment explanation
Indices: 1362307--1362744 Score: 417
Period size: 78 Copynumber: 5.6 Consensus size: 78
1362297 AATAAAAATG
* * * * * *
1362307 GGGTTGAAGTATCCCTGATAGTGAAAAGTCGACATTTTGGAAATAAAATCGAGGTTTGAGTACCC
1 GGGTTGGAGTATCCCTGATGGTGAAAAATCGATATTTTAGAAATAAAATCGAGGTTAGAGTACCC
1362372 TCTCGAAAATAAC-
66 TCT-GAAAATAACA
* * * * *
1362385 GGGTTGGAGTATCTCC-GATGGTGAAATATAGATATTTTAGAAATAAAATTGGGGTTAGAGTATC
1 GGGTTGGAGTATC-CCTGATGGTGAAAAATCGATATTTTAGAAATAAAATCGAGGTTAGAGTACC
* *
1362449 ATCTTAGAAATAAC-
65 CTCTGA-AAATAACA
* * * * * **
1362463 GGGTTGGAGTATCCCTGATGGTGAAAAATCGGTGTTTTAAAAATAAAACCG-GGTTGGAGTGTTC
1 GGGTTGGAGTATCCCTGATGGTGAAAAATCGATATTTTAGAAATAAAATCGAGGTTAGAGT-ACC
1362527 CT-TGGAAAATAACA
65 CTCT-GAAAATAACA
* * ** * *
1362541 GGATTGGAGTATCCC-GATGGTGAAAAATTGGCATTTTAGAAATAAAATGGGGGTTAGAGTATCT
1 GGGTTGGAGTATCCCTGATGGTGAAAAATCGATATTTTAGAAATAAAATCGAGGTTAGAGTA-C-
1362605 CCT-TGAAAATAACA
64 CCTCTGAAAATAACA
* * * * * *
1362619 GGGTTAGA-TATCCCTGATGGTGAAAAATCAATATTTTAGAAATAAAACCGAGGTTGGAATGCCC
1 GGGTTGGAGTATCCCTGATGGTGAAAAATCGATATTTTAGAAATAAAATCGAGGTTAGAGTACCC
1362683 -CATTGAAAATAACA
66 TC--TGAAAATAACA
* * *
1362697 GGGTTGGAGGATCCCCGATGGTGAAAAATTGATATTTTAGAAATAAAA
1 GGGTTGGAGTATCCCTGATGGTGAAAAATCGATATTTTAGAAATAAAA
1362745 ACATCAATGA
Statistics
Matches: 295, Mismatches: 51, Indels: 27
0.79 0.14 0.07
Matches are distributed among these distances:
76 2 0.01
77 55 0.19
78 197 0.67
79 41 0.14
ACGTcount: A:0.36, C:0.11, G:0.25, T:0.28
Consensus pattern (78 bp):
GGGTTGGAGTATCCCTGATGGTGAAAAATCGATATTTTAGAAATAAAATCGAGGTTAGAGTACCC
TCTGAAAATAACA
Found at i:1362595 original size:155 final size:156
Alignment explanation
Indices: 1362316--1362744 Score: 512
Period size: 155 Copynumber: 2.8 Consensus size: 156
1362306 GGGGTTGAAG
* * * * ** * * * * *
1362316 TATCCCTGATAGTGAAAAGTCGACATTTTGGAAATAAAATCGAGGTTTGAGTACCCTC-TCGAAA
1 TATCCCTGATGGTGAAAAATCAATATTTTAAAAATAAAACCGAGGTTGGAATGCCC-CATTGAAA
* * *
1362380 ATAAC-GGGTTGGAGTATCTCCGATGGTGAAATATAGATATTTTAGAAATAAAATTGGGGTTAGA
65 ATAACAGGGTTGGAGTATC-CCGATGGTGAAAAATTGATATTTTAGAAATAAAATGGGGGTTAGA
*
1362444 GTATCAT-CTT-AGAAATAAC-GGGTTGGA
129 GTATC-TCCTTGA-AAATAACAGGGTTAGA
** * * **
1362471 GTATCCCTGATGGTGAAAAATCGGTGTTTTAAAAATAAAACCG-GGTTGGAGTGTTCC-TTGGAA
1 -TATCCCTGATGGTGAAAAATCAATATTTTAAAAATAAAACCGAGGTTGGAATGCCCCATT-GAA
* **
1362534 AATAACAGGATTGGAGTATCCCGATGGTGAAAAATTGGCATTTTAGAAATAAAATGGGGGTTAGA
64 AATAACAGGGTTGGAGTATCCCGATGGTGAAAAATTGATATTTTAGAAATAAAATGGGGGTTAGA
1362599 GTATCTCCTTGAAAATAACAGGGTTAGA
129 GTATCTCCTTGAAAATAACAGGGTTAGA
*
1362627 TATCCCTGATGGTGAAAAATCAATATTTTAGAAATAAAACCGAGGTTGGAATGCCCCATTGAAAA
1 TATCCCTGATGGTGAAAAATCAATATTTTAAAAATAAAACCGAGGTTGGAATGCCCCATTGAAAA
*
1362692 TAACAGGGTTGGAGGATCCCCGATGGTGAAAAATTGATATTTTAGAAATAAAA
66 TAACAGGGTTGGAGTAT-CCCGATGGTGAAAAATTGATATTTTAGAAATAAAA
1362745 ACATCAATGA
Statistics
Matches: 234, Mismatches: 31, Indels: 15
0.84 0.11 0.05
Matches are distributed among these distances:
154 3 0.01
155 111 0.47
156 85 0.36
157 35 0.15
ACGTcount: A:0.36, C:0.12, G:0.24, T:0.28
Consensus pattern (156 bp):
TATCCCTGATGGTGAAAAATCAATATTTTAAAAATAAAACCGAGGTTGGAATGCCCCATTGAAAA
TAACAGGGTTGGAGTATCCCGATGGTGAAAAATTGATATTTTAGAAATAAAATGGGGGTTAGAGT
ATCTCCTTGAAAATAACAGGGTTAGA
Found at i:1365111 original size:21 final size:21
Alignment explanation
Indices: 1365087--1365129 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
1365077 AAGTGGCTCG
*
1365087 AAATGAAAAATGTATCTATAC
1 AAATGAAAAATGTATCGATAC
**
1365108 AAATGGTAAATGTATCGATAC
1 AAATGAAAAATGTATCGATAC
1365129 A
1 A
1365130 TTTACTTATG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.49, C:0.09, G:0.14, T:0.28
Consensus pattern (21 bp):
AAATGAAAAATGTATCGATAC
Found at i:1366436 original size:19 final size:19
Alignment explanation
Indices: 1366412--1366465 Score: 72
Period size: 19 Copynumber: 2.8 Consensus size: 19
1366402 TATAGATGCG
*
1366412 ATGTATCGATACAATTTTA
1 ATGTATCGATACAATTTGA
* *
1366431 ATGTATCGATGCAAATTGA
1 ATGTATCGATACAATTTGA
1366450 ATTGTATCGATACAAT
1 A-TGTATCGATACAAT
1366466 CTAGAAAACC
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 17 0.59
20 12 0.41
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (19 bp):
ATGTATCGATACAATTTGA
Found at i:1366504 original size:20 final size:20
Alignment explanation
Indices: 1366479--1366525 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
1366469 GAAAACCTAG
1366479 ATGTATCGATACATTTTGCA
1 ATGTATCGATACATTTTGCA
*
1366499 ATGTATCGATATATTTTGCA
1 ATGTATCGATACATTTTGCA
1366519 ATGTATC
1 ATGTATC
1366526 CATAAGTATC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.30, C:0.13, G:0.15, T:0.43
Consensus pattern (20 bp):
ATGTATCGATACATTTTGCA
Found at i:1369276 original size:35 final size:34
Alignment explanation
Indices: 1369185--1369320 Score: 123
Period size: 35 Copynumber: 4.0 Consensus size: 34
1369175 GACCTTACAA
* * * * *
1369185 CCCTATCTTTCA-AAGGCTAAGATAGAACTTTTT
1 CCCTATCTTTTATAAAGCTAAGATAAAACCTCTT
* *
1369218 CCTTATCTTTTCAT-ACGCTAAGATAAAACCTCTT
1 CCCTATCTTTT-ATAAAGCTAAGATAAAACCTCTT
1369252 CCCTATCTTTTATAAAAGCTAAGATAAAACCTCTT
1 CCCTATCTTTTAT-AAAGCTAAGATAAAACCTCTT
* * ** *
1369287 TCCTATCTTTTTTTACGGCTAAGATAGAACCTCT
1 CCCTATC-TTTTATAAAGCTAAGATAAAACCTCT
1369321 CAATCACTTC
Statistics
Matches: 85, Mismatches: 13, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
33 11 0.13
34 27 0.32
35 42 0.49
36 5 0.06
ACGTcount: A:0.30, C:0.24, G:0.09, T:0.38
Consensus pattern (34 bp):
CCCTATCTTTTATAAAGCTAAGATAAAACCTCTT
Found at i:1373056 original size:155 final size:155
Alignment explanation
Indices: 1372294--1373064 Score: 809
Period size: 156 Copynumber: 5.0 Consensus size: 155
1372284 TAAGTTCAAG
* ** * * * * *
1372294 AAAAATTACGAATATACCTTTAACGGATACCTTCTACGT-AGAAGTA-CCCGATACCCCTTAAAA
1 AAAAATTACGAAAATACCCCTAAGGGATACTTTCGACGTGA-AAGTATCTCGATA-CCCTTAAAG
* * * * * * ** **
1372357 AACTTAAAAAAGATTATAAAATGGATGAACCTATCCTAAATACCCATCTTCAACATAAAAGCGGG
64 GACTTAAAAAGGACTACAAAATGGATGAACCTATCCTAAATACCTACCTTCGGCATAAAAGC-AA
* *
1372422 CCTAGTTATAACCTAAGACTCGATTCTA
128 CCTGGTGATAACCTAAGACTCGATTCTA
* * * * * *
1372450 AAAAATTAC-AAAATACCCTTAAGGGATACTTTCGACATGGAAAATATCCCAATACCCCTAAAGG
1 AAAAATTACGAAAATACCCCTAAGGGATACTTTCGACGT-GAAAGTATCTCGATACCCTTAAAGG
*
1372514 ACTTAAAAAGGACTACAAAATAGATGAACCTATCCTAAATACCTACCCTT-GGCATAAAAGCAGA
65 ACTTAAAAAGGACTACAAAATGGATGAACCTATCCTAAATACCTA-CCTTCGGCATAAAAGCA-A
*
1372578 CCTGGTGATAACCTAAGGCTCGATTCTA
128 CCTGGTGATAACCTAAGACTCGATTCTA
* * * * *
1372606 AAAAATTATGAAAAT-GCCCTTAGGAGATACTTTTGACGTGAAAGTATCTCGATACCCCTAAAGG
1 AAAAATTACGAAAATACCCCTAAGG-GATACTTTCGACGTGAAAGTATCTCGATACCCTTAAAGG
* *
1372670 ACTTAAGAAGGACTACAAAATGGATGAACCTATCCTAAATACCTACCCTCGGCATAAAAGCAGAC
65 ACTTAAAAAGGACTACAAAATGGATGAACCTATCCTAAATACCTACCTTCGGCATAAAAGCA-AC
* * * *
1372735 TTGATGATAACCTAAGACTCGGTTCTG
129 CTGGTGATAACCTAAGACTCGATTCTA
* * * * *
1372762 AAAAATTATGAAAATCCCCCTAGGGGATACCTTCGACGTGAAAGTATCTCGATACCTTTAAAGGA
1 AAAAATTACGAAAATACCCCTAAGGGATACTTTCGACGTGAAAGTATCTCGATACCCTTAAAGGA
* * * * * *
1372827 CTTAAAAAGGACTACAAAAGGGATGAACCTATCCTAGATACCTACCCTAGGCATAAAAACAACCC
66 CTTAAAAAGGACTACAAAATGGATGAACCTATCCTAAATACCTACCTTCGGCATAAAAGCAACCT
* *
1372892 AGTGATAACCTAAGACTCGATTTTA
131 GGTGATAACCTAAGACTCGATTCTA
* * * *
1372917 AAAAATTACGAAAATACCCCTAAGGGAT-TTTTCAACGTGAAAGTATCTCGGTACCCTTAAAAGA
1 AAAAATTACGAAAATACCCCTAAGGGATACTTTCGACGTGAAAGTATCTCGATACCCTTAAAGGA
* * * * * * *
1372981 CTTAAAAAAGACTATAAAAGGGATGAACCTATCTTAAATATCC-ACCTTCGACATCAAAGTGAAC
66 CTTAAAAAGGACTACAAAATGGATGAACCTATCCTAAATA-CCTACCTTCGGCATAAAAG-CAAC
* * *
1373045 CCGGTAATAACCTAGGACTC
129 CTGGTGATAACCTAAGACTC
1373065 ATAAAGGATG
Statistics
Matches: 522, Mismatches: 82, Indels: 23
0.83 0.13 0.04
Matches are distributed among these distances:
154 77 0.15
155 95 0.18
156 317 0.61
157 33 0.06
ACGTcount: A:0.40, C:0.22, G:0.15, T:0.24
Consensus pattern (155 bp):
AAAAATTACGAAAATACCCCTAAGGGATACTTTCGACGTGAAAGTATCTCGATACCCTTAAAGGA
CTTAAAAAGGACTACAAAATGGATGAACCTATCCTAAATACCTACCTTCGGCATAAAAGCAACCT
GGTGATAACCTAAGACTCGATTCTA
Found at i:1373410 original size:144 final size:144
Alignment explanation
Indices: 1373117--1373407 Score: 349
Period size: 144 Copynumber: 2.0 Consensus size: 144
1373107 AAATGACTAC
* * * * * * * *
1373117 AAAATGGATGAACCTATCCTAGATACCTACCCTCGTCATAAAAGCAGATCGGTGATAACTTAGGA
1 AAAAGGGATGAACCTATCCTAAATACCCACCCTCGACATAAAAGCAAACCGGTGATAACCTAAGA
*
1373182 CTCGATTCTGAAAAATTATGAAAACACCCCTAAGGGATACTTTCGACGTGAAAGTATCACAGTAC
66 CTCGATTCTGAAAAATTATGAAAACACCCCTAAGGGATACTTTCAACGTGAAAGTATCACAGTAC
1373247 CCCTAAAAGACTGT
131 CCCTAAAAGACTGT
*
1373261 AAAAGGGATGAACCTATCCTAAATACCCACCTTCGACATAAAAGCAAACCCGGTGATAACCTAAG
1 AAAAGGGATGAACCTATCCTAAATACCCACCCTCGACATAAAAGCAAA-CCGGTGATAACCTAAG
* * ** * * * *
1373326 ACTC-ATTCTTAAAAGTTATGAAAA-TGCCCTTAGAGGTTACCTTT-AATGTGAAAGTATC-CTG
65 ACTCGATTCTGAAAAATTATGAAAACACCCCTAAG-GGATA-CTTTCAACGTGAAAGTATCAC-A
1373387 GTACCCCTAAAAGACT-T
127 GTACCCCTAAAAGACTGT
1373404 AAAA
1 AAAA
1373408 AGGACTACAA
Statistics
Matches: 125, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
143 12 0.10
144 92 0.74
145 21 0.17
ACGTcount: A:0.38, C:0.22, G:0.16, T:0.24
Consensus pattern (144 bp):
AAAAGGGATGAACCTATCCTAAATACCCACCCTCGACATAAAAGCAAACCGGTGATAACCTAAGA
CTCGATTCTGAAAAATTATGAAAACACCCCTAAGGGATACTTTCAACGTGAAAGTATCACAGTAC
CCCTAAAAGACTGT
Found at i:1373479 original size:420 final size:423
Alignment explanation
Indices: 1372643--1373485 Score: 999
Period size: 420 Copynumber: 2.0 Consensus size: 423
1372633 TACTTTTGAC
* *
1372643 GTGAAAGTATCTCGATACCCCTAAAGGACTTAAGAAGGACTACAAAATGGATGAACCTATCCTAA
1 GTGAAAGTATCTCGATACCCATAAAGGACTTAAAAAGGACTACAAAATGGATGAACCTATCCTAA
* *
1372708 ATACCTACCCTCGGCATAAAAGCAGACTTGATGATAACCTAAGACTCGGTTCTGAAAAATTATGA
66 ATACCTACCCTCGGCATAAAAGCAGACTCGATGATAACCTAAGACTCGATTCTGAAAAATTATGA
* * *
1372773 AAATCCCCCTAGGGGATACCTTCGACGTGAAAGTATCTCGATACCTTTAAAGGACTTAAAAAGGA
131 AAATCCCCCTAAGGGATACCTTCGACGTGAAAGTATCACGATACC--------ACCTAAAAAGGA
* * *
1372838 CTACAAAAGGGATGAACCTATCCTAGATACCTACCCTAGGCATAAAAACAACCCAGTGATAACCT
188 CTACAAAAGGGATGAACCTATCCTAAATACCCACCCTAGACATAAAAACAACCCAGTGATAACCT
**
1372903 AAGACTCGATTTTAAAAAATTACGAAAATACCCCTAAGGGATTTTTCAACGTGAAAGTATCTCGG
253 AAGACTCGATTTTAAAAAATTACGAAAATACCCCTAAGGGACCTTTCAACGTGAAAGTATCTCGG
* * * *
1372968 TACCCTTAAAAGACTTAAAAAAGACTATAAAAGGGATGAACCTATCTTAAATATCCACCTTCGAC
318 TACCCCTAAAAGACTTAAAAAAGACTACAAAAGGGATGAACCTATCATAAATATCCACCCTCGAC
* * * *
1373033 ATCAAAGTGAACCCGGTAATAACCTAGGACTCATAAAGGAT
383 ATAAAAATCAACCCGATAATAACCTAGGACTCATAAAGGAT
* * * *
1373074 GTGAAAGTATTTCGGTACCCATAAAGGACTTAAAAATGACTACAAAATGGATGAACCTATCCTAG
1 GTGAAAGTATCTCGATACCCATAAAGGACTTAAAAAGGACTACAAAATGGATGAACCTATCCTAA
* * * *
1373139 ATACCTACCCTCGTCATAAAAGCAGA-TCGGTGATAACTTAGGACTCGATTCTGAAAAATTATGA
66 ATACCTACCCTCGGCATAAAAGCAGACTCGATGATAACCTAAGACTCGATTCTGAAAAATTATGA
* **
1373203 AAA-CACCCCTAAGGGATACTTTCGACGTGAAAGTATCAC-AGTACC-CCT-AAAA-GACTGTAA
131 AAATC-CCCCTAAGGGATACCTTCGACGTGAAAGTATCACGA-TACCACCTAAAAAGGACTACAA
* * * *
1373263 AAGGGATGAACCTATCCTAAATACCCACCTTCGACATAAAAGCAAACCCGGTGATAACCTAAGAC
194 AAGGGATGAACCTATCCTAAATACCCACCCTAGACATAAAAAC-AACCCAGTGATAACCTAAGAC
* * * * * *
1373328 TC-ATTCTT-AAAAGTTATGAAAATGCCCTTAGAGGTTACCTTT-AATGTGAAAGTATC-CTGGT
258 TCGATT-TTAAAAAATTACGAAAATACCCCTA-AGG-GACCTTTCAACGTGAAAGTATCTC-GGT
* * * * **
1373389 ACCCCTAAAAGACTTAAAAAGGACTACAAAATGGATGAACTTATCATAGATA-CCTACCCTCGGT
319 ACCCCTAAAAGACTTAAAAAAGACTACAAAAGGGATGAACCTATCATAAATATCC-ACCCTCGAC
* * *
1373453 A-AAAAATCAGACCTGATGATAACCTAGTACTCA
383 ATAAAAATCA-ACCCGATAATAACCTAGGACTCA
1373486 GTTTTAAAAA
Statistics
Matches: 353, Mismatches: 50, Indels: 29
0.82 0.12 0.07
Matches are distributed among these distances:
419 72 0.20
420 118 0.33
421 6 0.02
429 2 0.01
430 71 0.20
431 84 0.24
ACGTcount: A:0.39, C:0.21, G:0.16, T:0.23
Consensus pattern (423 bp):
GTGAAAGTATCTCGATACCCATAAAGGACTTAAAAAGGACTACAAAATGGATGAACCTATCCTAA
ATACCTACCCTCGGCATAAAAGCAGACTCGATGATAACCTAAGACTCGATTCTGAAAAATTATGA
AAATCCCCCTAAGGGATACCTTCGACGTGAAAGTATCACGATACCACCTAAAAAGGACTACAAAA
GGGATGAACCTATCCTAAATACCCACCCTAGACATAAAAACAACCCAGTGATAACCTAAGACTCG
ATTTTAAAAAATTACGAAAATACCCCTAAGGGACCTTTCAACGTGAAAGTATCTCGGTACCCCTA
AAAGACTTAAAAAAGACTACAAAAGGGATGAACCTATCATAAATATCCACCCTCGACATAAAAAT
CAACCCGATAATAACCTAGGACTCATAAAGGAT
Found at i:1375978 original size:167 final size:164
Alignment explanation
Indices: 1375655--1376025 Score: 383
Period size: 166 Copynumber: 2.2 Consensus size: 164
1375645 AATCCCCCTA
* * ** *
1375655 AAAAAATTTACGGAGAAGAAAAC-TCAGT-TTCTCG-AAAAAAGGGGATTTTCAAAGAAAAATTC
1 AAAAAATTTACGGAGTAGAAAACATCA-TATT-TCGAAAAAAAAGAAAATTTCAAAGAAAAATTC
* * * * * * * ** *
1375717 CAAACTCATAAAAATGAATTAATTTTTTAAAACTGATTTAATATGAACCAAATGATGATTTTTGA
64 AAAACTCATAAAAATGAATGAATTTTTGAAAAATGAATTAAAATGAA-CAAATAACAATATTTGA
* * * *
1375782 TATATTTTAAAATTTTAAAACCAAGAAAAATCTCTTTG
128 TATATTTTAAAAATTGAAAACCAAGAAAAATC-CCTCG
1375820 AAAAAATTTACGGAGTAGAAAACATCATATTTCGAAAAAAAAGAAAATTTCAAAGAAAAAATTCA
1 AAAAAATTTACGGAGTAGAAAACATCATATTTCGAAAAAAAAGAAAATTTCAAAG-AAAAATTC-
* *
1375885 AAAACTCATGAAAATGAATGAATTTTTGAAAAATGAATTAAAATGGAA-TAATAACAATATTTGA
64 AAAACTCATAAAAATGAATGAATTTTTGAAAAATGAATTAAAAT-GAACAAATAACAATATTTGA
**
1375949 TGA-ATTTTAAAAATTGAAAACTGAGAAAAATCCCTCG
128 T-ATATTTTAAAAATTGAAAACCAAGAAAAATCCCTCG
* * * * *
1375986 AAAAAATTTATGAAGTAAAAAATATCGTATTTCGAAAAAA
1 AAAAAATTTACGGAGTAGAAAACATCATATTTCGAAAAAA
1376026 GGGAGAATTC
Statistics
Matches: 171, Mismatches: 28, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
165 26 0.15
166 59 0.35
167 45 0.26
168 38 0.22
169 3 0.02
ACGTcount: A:0.51, C:0.09, G:0.12, T:0.29
Consensus pattern (164 bp):
AAAAAATTTACGGAGTAGAAAACATCATATTTCGAAAAAAAAGAAAATTTCAAAGAAAAATTCAA
AACTCATAAAAATGAATGAATTTTTGAAAAATGAATTAAAATGAACAAATAACAATATTTGATAT
ATTTTAAAAATTGAAAACCAAGAAAAATCCCTCG
Found at i:1380621 original size:26 final size:25
Alignment explanation
Indices: 1380564--1380621 Score: 73
Period size: 28 Copynumber: 2.2 Consensus size: 25
1380554 TTGAATTTTT
1380564 TATTTTCGAGGATACTCCAACCCTA
1 TATTTTCGAGGATACTCCAACCCTA
*
1380589 TCATTTTCGAGGGGATACTCCAACCTTA
1 T-ATTTTCGA--GGATACTCCAACCCTA
1380617 T-TTTT
1 TATTTT
1380622 ACTTCGAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.03
26 12 0.41
28 16 0.55
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.38
Consensus pattern (25 bp):
TATTTTCGAGGATACTCCAACCCTA
Found at i:1380637 original size:80 final size:79
Alignment explanation
Indices: 1380492--1380848 Score: 223
Period size: 79 Copynumber: 4.5 Consensus size: 79
1380482 GTAGTCATCA
* * ** * * *
1380492 GAGATACTCCAACCCCACCATTTTTAAAAAGATACTCCAACCCTGTTTTTACTTTCAAAACATTG
1 GAGATACTCCAATCCCATCATTTCCAAGAGGATACTCCAACCCTATTTTTACTTTCAAAACATTG
* *
1380557 AATTTTTTATTTTC
66 AATTTTTCATGTTC
* * * * *
1380571 GAGGATACTCCAA-CCCTATCATTTTCGAGGGGATACTCCAACCTTATTTTTAC-TTCGAAAATA
1 GA-GATACTCCAATCCC-ATCATTTCCAAGAGGATACTCCAACCCTATTTTTACTTTC-AAAACA
*
1380634 TTGAATTTTTCATGTTG
63 TTGAATTTTTCATGTTC
* **
1380651 GAGATACTCCAATCCCATCATTTCCAAGAGAATACTCCAACCC--CGTTTA-TTTCCCAAAA-AT
1 GAGATACTCCAATCCCATCATTTCCAAGAGGATACTCCAACCCTATTTTTACTTT--CAAAACAT
* *
1380712 TGAATTTTTTAT-CTC
64 TGAATTTTTCATGTTC
* * * * * * *
1380727 TGGGATATTTC-ATCCCCACCATCTCCGAAG-GGATACTCCAACCCTATTTTTA-GTTCTGAAAC
1 -GAGATACTCCAAT-CCCATCATTTCC-AAGAGGATACTCCAACCCTATTTTTACTTTC-AAAAC
*** *
1380789 ACCAAAATTTTCAT-TTC
62 ATTGAATTTTTCATGTTC
* * * * *
1380806 AAGGGTACTCCAACCCCATCATTTCCAAAAGGGTACTCCAACC
1 GA-GATACTCCAATCCCATCATTTCCAAGAGGATACTCCAACC
1380849 TTGTATTCTA
Statistics
Matches: 213, Mismatches: 48, Indels: 34
0.72 0.16 0.12
Matches are distributed among these distances:
76 3 0.01
77 50 0.23
78 12 0.06
79 85 0.40
80 63 0.30
ACGTcount: A:0.30, C:0.26, G:0.11, T:0.33
Consensus pattern (79 bp):
GAGATACTCCAATCCCATCATTTCCAAGAGGATACTCCAACCCTATTTTTACTTTCAAAACATTG
AATTTTTCATGTTC
Found at i:1380691 original size:79 final size:78
Alignment explanation
Indices: 1380492--1380693 Score: 219
Period size: 80 Copynumber: 2.5 Consensus size: 78
1380482 GTAGTCATCA
* * * *
1380492 GAGATACTCCAACCCCACCATTTTTAA-AAAGATACTCCAACCCTGTTTTTACTTTCAAAACATT
1 GAGATACTCCAA-CCCATCATTTTCAAGAGA-ATACTCCAACCCTATTTTTACTTTCAAAACATT
* *
1380556 GAATTTTTTATTTTC
64 GAATTTTTCATGTTC
* * * * *
1380571 GAGGATACTCCAACCCTATCATTTTCGAGGGGATACTCCAACCTTATTTTTAC-TTCGAAAATAT
1 GA-GATACTCCAACCC-ATCATTTTCAAGAGAATACTCCAACCCTATTTTTACTTTC-AAAACAT
*
1380635 TGAATTTTTCATGTTG
63 TGAATTTTTCATGTTC
*
1380651 GAGATACTCCAATCCCATCATTTCCAAGAGAATACTCCAACCC
1 GAGATACTCCAA-CCCATCATTTTCAAGAGAATACTCCAACCC
1380694 CGTTTATTTC
Statistics
Matches: 101, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
79 40 0.40
80 61 0.60
ACGTcount: A:0.31, C:0.25, G:0.10, T:0.34
Consensus pattern (78 bp):
GAGATACTCCAACCCATCATTTTCAAGAGAATACTCCAACCCTATTTTTACTTTCAAAACATTGA
ATTTTTCATGTTC
Found at i:1383728 original size:69 final size:65
Alignment explanation
Indices: 1383653--1384049 Score: 248
Period size: 59 Copynumber: 6.3 Consensus size: 65
1383643 TAGATAAGTG
1383653 CACCAACTTGTGTGGGCTTTAAATTATAAAAAAAGAGAGGCATCCTACTCTTTGAGGACTAGAAG
1 CACCAACTTGTGTGGGCTTTAAATTA-AAAAAAAG-GAGG--TCCTACTCTTTGAGGACTAGAAG
*
1383718 GTGT
62 GTGC
* ** * * *
1383722 CACCAACTTGTGTGGACTTTAAAAGAAAAAGCATCCTATGG-TGTCCTGCTCTTTGAGGACTA-A
1 CACCAACTTGTGTGGGCTTTAAATTAAAAA--A----AAGGAGGTCCTACTCTTTGAGGACTAGA
1383785 AGGTGC
60 AGGTGC
* * * * *
1383791 CACCAACTTATGTGGGC--T---TTAAAAGAAAGG-TGTCCTACTCTTTGAAGACTAGAAGATGC
1 CACCAACTTGTGTGGGCTTTAAATTAAAAAAAAGGAGGTCCTACTCTTTGAGGACTAGAAGGTGC
* * * * *
1383850 CACCAACTTGTGTGGGCTTT--A--AAAGAAAAGG-TGTCTTGCTCTTTGAAGACTA-ATAGGTG
1 CACCAACTTGTGTGGGCTTTAAATTAAAAAAAAGGAGGTCCTACTCTTTGAGGACTAGA-AGGTG
1383909 C
65 C
* ** * * *
1383910 CACCAACTTGTGTAGGC--T---TTAAAAGGAAGG-TGTCTTGCTCTTTGAGGACTAGAAGGTGC
1 CACCAACTTGTGTGGGCTTTAAATTAAAAAAAAGGAGGTCCTACTCTTTGAGGACTAGAAGGTGC
* * * * * * * *
1383969 CACCAACTTGTGTGGGCTTT-GA--AAGAAGAAGG-CGTCCTGCTCTTTGAGGACTAAAATGTGT
1 CACCAACTTGTGTGGGCTTTAAATTAAAAAAAAGGAGGTCCTACTCTTTGAGGACTAGAAGGTGC
1384030 CACCAACTTGTGTGGGCTTT
1 CACCAACTTGTGTGGGCTTT
1384050 GAAAGGAGAA
Statistics
Matches: 275, Mismatches: 35, Indels: 44
0.78 0.10 0.12
Matches are distributed among these distances:
58 23 0.08
59 72 0.26
60 49 0.18
61 54 0.20
62 1 0.00
64 4 0.01
67 1 0.00
68 4 0.01
69 44 0.16
70 19 0.07
72 1 0.00
73 1 0.00
74 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.28
Consensus pattern (65 bp):
CACCAACTTGTGTGGGCTTTAAATTAAAAAAAAGGAGGTCCTACTCTTTGAGGACTAGAAGGTGC
Found at i:1383971 original size:119 final size:119
Alignment explanation
Indices: 1383761--1384056 Score: 441
Period size: 119 Copynumber: 2.5 Consensus size: 119
1383751 AGCATCCTAT
* *
1383761 GGTGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTATGTGGGCTTTAAAAGAAAGGTGTCC
1 GGTGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAGGTGTCC
* *
1383826 TACTCTTTGAAGACTAGAAGATGCCACCAACTTGTGTGGGCTTTAAAAGAA-AA
66 TACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAGAA
* * *
1383879 GGTGTCTTGCTCTTTGAAGACTAATAGGTGCCACCAACTTGTGTAGGCTTTAAAAGGAAGGTGTC
1 GGTGTCCTGCTCTTTGAGGACTAA-AGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAGGTGTC
* * *
1383944 TTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGAAGAA
65 CTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAGAA
* * * *
1383999 GGCGTCCTGCTCTTTGAGGACTAAAATGTGTCACCAACTTGTGTGGGCTTTGAAAGGA
1 GGTGTCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGA
1384057 GAAGGCATCC
Statistics
Matches: 158, Mismatches: 17, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
118 22 0.14
119 84 0.53
120 50 0.32
121 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (119 bp):
GGTGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAGGTGTCC
TACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAGAA
Found at i:1384034 original size:61 final size:61
Alignment explanation
Indices: 1383761--1384087 Score: 414
Period size: 59 Copynumber: 5.5 Consensus size: 61
1383751 AGCATCCTAT
* *
1383761 GGTGTCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTTATGTGGGCTTTAAAAG-A-AA
1 GGTGTCCTGCTCTTTGAAGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAGAA
* * *
1383819 GGTGTCCTACTCTTTGAAGACTAGAAGATGCCACCAACTTGTGTGGGCTTTAAAAGAA-AA
1 GGTGTCCTGCTCTTTGAAGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAGAA
* * *
1383879 GGTGTCTTGCTCTTTGAAGACTAATAGGTGCCACCAACTTGTGTAGGCTTTAAAAG--GAA
1 GGTGTCCTGCTCTTTGAAGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAGAA
* * * *
1383938 GGTGTCTTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGAAGAA
1 GGTGTCCTGCTCTTTGAAGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAGAA
* * * * * *
1383999 GGCGTCCTGCTCTTTGAGGACTAAAATGTGTCACCAACTTGTGTGGGCTTTGAAAGGAGAA
1 GGTGTCCTGCTCTTTGAAGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAGAA
** * *
1384060 GGCATCCTACTCCTTGAAGACTAAAAGG
1 GGTGTCCTGCTCTTTGAAGACTAAAAGG
1384088 AGAAAAGGTT
Statistics
Matches: 237, Mismatches: 27, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
58 20 0.08
59 83 0.35
60 53 0.22
61 81 0.34
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.28
Consensus pattern (61 bp):
GGTGTCCTGCTCTTTGAAGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAGAA
Found at i:1391228 original size:20 final size:20
Alignment explanation
Indices: 1391199--1391437 Score: 114
Period size: 20 Copynumber: 12.8 Consensus size: 20
1391189 GTAAAAAGCT
*
1391199 AGAATATATCGATACATTGA
1 AGAATGTATCGATACATTGA
*
1391219 AGAATGTATCGATACATTCA
1 AGAATGTATCGATACATTGA
* *
1391239 TA-CATATATCGATACATTGA
1 -AGAATGTATCGATACATTGA
* *
1391259 AAAATGTATCAATACATCTG-
1 AGAATGTATCGATACAT-TGA
1391279 -G---GTA--GA-A-A--GA
1 AGAATGTATCGATACATTGA
1391289 CAGAATGTATCGATACATTGA
1 -AGAATGTATCGATACATTGA
*
1391310 AGAATGTATCGATACATTCA
1 AGAATGTATCGATACATTGA
* *
1391330 TA-CATGTATTGATACATCT--
1 -AGAATGTATCGATACAT-TGA
1391349 AG--T-TA--GA-A-A--GA
1 AGAATGTATCGATACATTGA
*
1391360 TAGAATGTATCGACACATTGA
1 -AGAATGTATCGATACATTGA
*
1391381 AGAATGTATCGATACATTCA
1 AGAATGTATCGATACATTGA
*
1391401 TA-CATGTATCGATACATTGA
1 -AGAATGTATCGATACATTGA
* *
1391421 AAAATATATCGATACAT
1 AGAATGTATCGATACAT
1391438 CTGGATAAAA
Statistics
Matches: 168, Mismatches: 19, Indels: 64
0.67 0.08 0.25
Matches are distributed among these distances:
9 1 0.01
12 5 0.03
13 2 0.01
14 4 0.02
15 5 0.03
16 5 0.03
17 5 0.03
18 3 0.02
19 4 0.02
20 124 0.74
21 10 0.06
ACGTcount: A:0.41, C:0.13, G:0.15, T:0.30
Consensus pattern (20 bp):
AGAATGTATCGATACATTGA
Found at i:1391229 original size:51 final size:50
Alignment explanation
Indices: 1391154--1391326 Score: 161
Period size: 51 Copynumber: 3.6 Consensus size: 50
1391144 TAACTAGATG
* * **
1391154 TATCGATGCATTGAATAACATATCGATACATCTGGGTAAAAAGCTAGAATA
1 TATCGATACATTGAAGAATGTATCGATACATCTGGGT-AAAAGCTAGAATA
* *
1391205 TATCGATACATTGAAGAATGTATCGATACA--T---T--CA--TA-CATA
1 TATCGATACATTGAAGAATGTATCGATACATCTGGGTAAAAGCTAGAATA
* * *
1391245 TATCGATACATTGAAAAATGTATCAATACATCTGGGTAGAAAGAC-AGAATG
1 TATCGATACATTGAAGAATGTATCGATACATCTGGGTA-AAAG-CTAGAATA
1391296 TATCGATACATTGAAGAATGTATCGATACAT
1 TATCGATACATTGAAGAATGTATCGATACAT
1391327 TCATACATGT
Statistics
Matches: 97, Mismatches: 13, Indels: 24
0.72 0.10 0.18
Matches are distributed among these distances:
40 31 0.32
41 2 0.02
42 1 0.01
43 1 0.01
45 1 0.01
46 1 0.01
48 1 0.01
49 1 0.01
50 1 0.01
51 57 0.59
ACGTcount: A:0.41, C:0.13, G:0.17, T:0.29
Consensus pattern (50 bp):
TATCGATACATTGAAGAATGTATCGATACATCTGGGTAAAAGCTAGAATA
Found at i:1391294 original size:71 final size:71
Alignment explanation
Indices: 1391219--1391417 Score: 229
Period size: 71 Copynumber: 2.8 Consensus size: 71
1391209 GATACATTGA
* * *
1391219 AGAATGTATCGATACATTCATA-CATATATCGATACATTGAAAAATGTATCAATACATCTGGGTA
1 AGAATGTATCGATACATTCA-AGAATATATCGATACATTCAAAAATGTATCAATACATCTAGGTA
1391283 GAAAGAC
65 GAAAGAC
* * * * ** *
1391290 AGAATGTATCGATACATTGAAGAATGTATCGATACATTCATACATGTATTGATACATCTAGTTAG
1 AGAATGTATCGATACATTCAAGAATATATCGATACATTCAAAAATGTATCAATACATCTAGGTAG
*
1391355 AAAGAT
66 AAAGAC
* * * * * *
1391361 AGAATGTATCGACACATTGAAGAATGTATCGATACATTCATACATGTATCGATACAT
1 AGAATGTATCGATACATTCAAGAATATATCGATACATTCAAAAATGTATCAATACAT
1391418 TGAAAAATAT
Statistics
Matches: 114, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
70 1 0.01
71 113 0.99
ACGTcount: A:0.40, C:0.14, G:0.16, T:0.30
Consensus pattern (71 bp):
AGAATGTATCGATACATTCAAGAATATATCGATACATTCAAAAATGTATCAATACATCTAGGTAG
AAAGAC
Found at i:1391309 original size:91 final size:91
Alignment explanation
Indices: 1391154--1391346 Score: 289
Period size: 91 Copynumber: 2.1 Consensus size: 91
1391144 TAACTAGATG
* * *
1391154 TATCGATGCATTGAATAACATATCGATACATCTGGGTAAAAAGCTAGAATATATCGATACATTGA
1 TATCGATACATTGAAAAACATATCAATACATCTGGGTAAAAAGCTAGAATATATCGATACATTGA
1391219 AGAATGTATCGATACATTCATACATA
66 AGAATGTATCGATACATTCATACATA
** * *
1391245 TATCGATACATTGAAAAATGTATCAATACATCTGGGTAGAAAGAC-AGAATGTATCGATACATTG
1 TATCGATACATTGAAAAACATATCAATACATCTGGGTAAAAAG-CTAGAATATATCGATACATTG
*
1391309 AAGAATGTATCGATACATTCATACATG
65 AAGAATGTATCGATACATTCATACATA
*
1391336 TATTGATACAT
1 TATCGATACAT
1391347 CTAGTTAGAA
Statistics
Matches: 92, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
91 91 0.99
92 1 0.01
ACGTcount: A:0.40, C:0.13, G:0.16, T:0.30
Consensus pattern (91 bp):
TATCGATACATTGAAAAACATATCAATACATCTGGGTAAAAAGCTAGAATATATCGATACATTGA
AGAATGTATCGATACATTCATACATA
Found at i:1398615 original size:52 final size:51
Alignment explanation
Indices: 1398537--1398685 Score: 226
Period size: 52 Copynumber: 2.9 Consensus size: 51
1398527 CGAAATATGA
1398537 AAATTTGCCTGCATGTATCGATACATTGAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTG-ATAGTGTATCGATACATCTGGGC
* *
1398589 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACA-TTGATAGTGTATCGATACATCTGGGC
* **
1398641 AAATTTGCCTGCATGTATCGATATAAAGATCAGTGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACATTGAT-AGTGTATCGATACA
1398686 ATGTATCGAT
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
51 2 0.02
52 84 0.95
53 2 0.02
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.34
Consensus pattern (51 bp):
AAATTTGCCTGCATGTATCGATACATTGATAGTGTATCGATACATCTGGGC
Found at i:1398692 original size:13 final size:13
Alignment explanation
Indices: 1398674--1398698 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1398664 TAAAGATCAG
1398674 TGTATCGATACAA
1 TGTATCGATACAA
1398687 TGTATCGATACA
1 TGTATCGATACA
1398699 TTTAAGTGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1398776 original size:33 final size:33
Alignment explanation
Indices: 1398739--1398805 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
1398729 AGTAGCTTGA
1398739 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* * ***
1398772 ATTGTATCTATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
1398805 A
1 A
1398806 AATCGTTGAA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.40, C:0.13, G:0.10, T:0.36
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:1401605 original size:27 final size:26
Alignment explanation
Indices: 1401558--1401608 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
1401548 TGATTTGCTG
* * *
1401558 AAATTAATATTTATTATTTAATTATT
1 AAATTAATATATAATAATTAATTATT
1401584 AAATATAATATATAATAATTAATTA
1 AAAT-TAATATATAATAATTAATTA
1401609 ATTTTGTAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 4 0.19
27 17 0.81
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (26 bp):
AAATTAATATATAATAATTAATTATT
Found at i:1401862 original size:18 final size:18
Alignment explanation
Indices: 1401764--1401862 Score: 65
Period size: 18 Copynumber: 5.1 Consensus size: 18
1401754 TATTTTCTAA
1401764 TATATATTATAATTATATT
1 TATATATTAT-ATTATATT
* *
1401783 TAAAATATT-TATATAAATTT
1 T-ATATATTATAT-TATA-TT
1401803 TAATATATTAATAATTCATATT
1 T-ATATATT-AT-ATT-ATATT
* * *
1401825 ATATAAATTATATCACATT
1 -TATATATTATATTATATT
1401844 TATATATTATATTATATT
1 TATATATTATATTATATT
1401862 T
1 T
1401863 TAATTATTTT
Statistics
Matches: 62, Mismatches: 10, Indels: 17
0.70 0.11 0.19
Matches are distributed among these distances:
18 18 0.29
19 9 0.15
20 18 0.29
21 2 0.03
22 10 0.16
23 5 0.08
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (18 bp):
TATATATTATATTATATT
Found at i:1405227 original size:36 final size:36
Alignment explanation
Indices: 1405187--1405258 Score: 117
Period size: 36 Copynumber: 2.0 Consensus size: 36
1405177 CCTTGCGAAT
1405187 CTTATATTTCCACAGAACTTTCAAATAAGTAATATG
1 CTTATATTTCCACAGAACTTTCAAATAAGTAATATG
** *
1405223 CTTATATTTCTGCAGAACTTTCAAATATGTAATATG
1 CTTATATTTCCACAGAACTTTCAAATAAGTAATATG
1405259 TCATTAATAG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (36 bp):
CTTATATTTCCACAGAACTTTCAAATAAGTAATATG
Found at i:1407690 original size:15 final size:16
Alignment explanation
Indices: 1407669--1407706 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
1407659 TTTATTTGAG
1407669 TTATTTTAAATATAAA
1 TTATTTTAAATATAAA
* *
1407685 TT-TTTTAATTTTAAA
1 TTATTTTAAATATAAA
1407700 TTATTTT
1 TTATTTT
1407707 TAATTTAGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
15 13 0.68
16 6 0.32
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (16 bp):
TTATTTTAAATATAAA
Found at i:1407713 original size:16 final size:16
Alignment explanation
Indices: 1407635--1407713 Score: 63
Period size: 16 Copynumber: 5.0 Consensus size: 16
1407625 TTTGGGTTAG
* *
1407635 AATTAATTTTGATTTA
1 AATTATTTTTAATTTA
* * *
1407651 ACTTATTTTTTATTTG
1 AATTATTTTTAATTTA
* * *
1407667 AGTTATTTTAAATATA
1 AATTATTTTTAATTTA
1407683 AA-T-TTTTTAATTTTA
1 AATTATTTTTAA-TTTA
1407698 AATTATTTTTAATTTA
1 AATTATTTTTAATTTA
1407714 GATAAGTTTA
Statistics
Matches: 48, Mismatches: 12, Indels: 6
0.73 0.18 0.09
Matches are distributed among these distances:
14 6 0.12
15 6 0.12
16 29 0.60
17 7 0.15
ACGTcount: A:0.34, C:0.01, G:0.04, T:0.61
Consensus pattern (16 bp):
AATTATTTTTAATTTA
Found at i:1410013 original size:31 final size:31
Alignment explanation
Indices: 1409975--1410061 Score: 147
Period size: 31 Copynumber: 2.8 Consensus size: 31
1409965 TGAAGGCATG
1409975 GGTTTTGTTGGTTTTAAACCAAATTATGTTA
1 GGTTTTGTTGGTTTTAAACCAAATTATGTTA
*
1410006 GGTTTTGTTGGTTTTGAACCAAATTATGTTA
1 GGTTTTGTTGGTTTTAAACCAAATTATGTTA
* *
1410037 GCTTTTGTTGGTTTTTAACCAAATT
1 GGTTTTGTTGGTTTTAAACCAAATT
1410062 GGAAAAAAAA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 53 1.00
ACGTcount: A:0.23, C:0.08, G:0.20, T:0.49
Consensus pattern (31 bp):
GGTTTTGTTGGTTTTAAACCAAATTATGTTA
Found at i:1410608 original size:3 final size:3
Alignment explanation
Indices: 1410587--1410638 Score: 61
Period size: 3 Copynumber: 17.3 Consensus size: 3
1410577 TAAATTTTGT
* **
1410587 TTA TTA -TA TTA GTTT TTA TTA TTA TGG TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1410632 TTA TTA T
1 TTA TTA T
1410639 GTAAGTAAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
2 2 0.05
3 37 0.90
4 2 0.05
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:1411527 original size:3 final size:3
Alignment explanation
Indices: 1411521--1411573 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
1411511 GATGATGATG
1411521 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1411569 ATA AT
1 ATA AT
1411574 TCAAAAGAAA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:1412004 original size:23 final size:24
Alignment explanation
Indices: 1411970--1412021 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
1411960 ATGAAAGGAG
*
1411970 AAACAGCTAC-AAT-AAAGAAGAAA
1 AAACAGCAACAAATGAAAGAA-AAA
*
1411993 CAACAGCAACAAATGAAAGAAAAA
1 AAACAGCAACAAATGAAAGAAAAA
1412017 AAACA
1 AAACA
1412022 ATTAAGCTGT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
23 8 0.33
24 10 0.42
25 6 0.25
ACGTcount: A:0.67, C:0.15, G:0.12, T:0.06
Consensus pattern (24 bp):
AAACAGCAACAAATGAAAGAAAAA
Found at i:1412272 original size:23 final size:23
Alignment explanation
Indices: 1412246--1412295 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
1412236 AACAAAAAAA
* * *
1412246 AAAAAGAGCCAGCAAACACTAGC
1 AAAAACAGCAAGCAAACACTAAC
*
1412269 AAAAACATCAAGCAAACACTAAC
1 AAAAACAGCAAGCAAACACTAAC
1412292 AAAA
1 AAAA
1412296 TAGCAATCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.60, C:0.24, G:0.10, T:0.06
Consensus pattern (23 bp):
AAAAACAGCAAGCAAACACTAAC
Found at i:1413671 original size:160 final size:157
Alignment explanation
Indices: 1413443--1413806 Score: 360
Period size: 160 Copynumber: 2.3 Consensus size: 157
1413433 ATAAAATTTT
* * * *
1413443 TTAAAACTTTTCATATTTTTTCGGGCTTTCATTAAGGTACGAAATGATATTTTTCAAAAATAAAT
1 TTAAAACTTTTCATATCTTTTCGGGCTTCCATTAAGGTACGAAAGGATATTTTTCAAAAACAAAT
** **
1413508 -AAAAAATTGAATTAACACTCTCAT-AATTAAAATAAAT-ATTAATTGTTTTTAATCTTTTATAT
66 AAAAAAATAAAATTAACAC-CT-ATAAACCAAAA-AAATCATTAATT-TTTTTAATCTTTTATAT
* *
1413570 TCCTATAGGTGTCCATAGGGGTATAAAGGATC
127 TCCCAT-GGGGTCCATAGGGGTATAAAGGATC
* * * *
1413602 TTAAAATCTTTTCGTATCTTTTCGGG-TCTCCATTAAGGTACGAAAGGGTATTTCTT-GAAAACG
1 TTAAAA-CTTTTCATATCTTTTCGGGCT-TCCATTAAGGTACGAAAGGATATTT-TTCAAAAACA
* *
1413665 AATAAAAAAATAAAATTAATACCTATACAACCAAAAGAATCATTAATTTTTTTAATCTTTTATAT
63 AATAAAAAAATAAAATTAACACCTATA-AACCAAAAAAATCATTAATTTTTTTAATCTTTTATAT
* * ** *
1413730 TCCCATGGGGTGCGTAGGGGTATAAAATATT
127 TCCCATGGGGTCCATAGGGGTATAAAGGATC
** * * *
1413761 TATAAAAAATTTCATATCTTTTTCGAGTTTCCATTAAGGTATGAAA
1 T-TAAAACTTTTCATATC-TTTTCGGGCTTCCATTAAGGTACGAAA
1413807 TTAATAAATA
Statistics
Matches: 169, Mismatches: 26, Indels: 19
0.79 0.12 0.09
Matches are distributed among these distances:
159 37 0.22
160 101 0.60
161 31 0.18
ACGTcount: A:0.37, C:0.12, G:0.13, T:0.38
Consensus pattern (157 bp):
TTAAAACTTTTCATATCTTTTCGGGCTTCCATTAAGGTACGAAAGGATATTTTTCAAAAACAAAT
AAAAAAATAAAATTAACACCTATAAACCAAAAAAATCATTAATTTTTTTAATCTTTTATATTCCC
ATGGGGTCCATAGGGGTATAAAGGATC
Found at i:1416234 original size:19 final size:18
Alignment explanation
Indices: 1416210--1416304 Score: 93
Period size: 19 Copynumber: 5.7 Consensus size: 18
1416200 AAACCGTAAC
1416210 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGT-T
1416229 TGTATCGATAC--AA---
1 TGTATCGATACATAAGTT
1416242 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGT-T
1416261 TGTATCGATAC--AA---
1 TGTATCGATACATAAGTT
1416274 TGTATCGATACATAAGTTT
1 TGTATCGATACATAAG-TT
1416293 TGTATCGATACA
1 TGTATCGATACA
1416305 ATATATCGCT
Statistics
Matches: 64, Mismatches: 0, Indels: 24
0.73 0.00 0.27
Matches are distributed among these distances:
13 22 0.34
15 4 0.06
17 4 0.06
19 34 0.53
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.36
Consensus pattern (18 bp):
TGTATCGATACATAAGTT
Found at i:1416247 original size:13 final size:13
Alignment explanation
Indices: 1416229--1416285 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
1416219 ACATAAGTGT
1416229 TGTATCGATACAA
1 TGTATCGATACAA
1416242 TGTATCGATACATAA
1 TGTATCGATAC--AA
1416257 GTGTTGTATCGATACAA
1 ----TGTATCGATACAA
1416274 TGTATCGATACA
1 TGTATCGATACA
1416286 TAAGTTTTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 23 0.61
15 2 0.05
17 2 0.05
19 11 0.29
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1416251 original size:32 final size:32
Alignment explanation
Indices: 1416210--1416312 Score: 188
Period size: 32 Copynumber: 3.2 Consensus size: 32
1416200 AAACCGTAAC
1416210 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
1416242 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
*
1416274 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
*
1416306 TATATCG
1 TGTATCG
1416313 CTACGAAGCT
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 69 1.00
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.36
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:1416375 original size:13 final size:13
Alignment explanation
Indices: 1416357--1416383 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1416347 ATTACTCAAA
1416357 TGTATCGATACAT
1 TGTATCGATACAT
1416370 TGTATCGATACAT
1 TGTATCGATACAT
1416383 T
1 T
1416384 TGATCTTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1417359 original size:20 final size:20
Alignment explanation
Indices: 1417322--1417360 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
1417312 ACAACCTTGA
*
1417322 TCATGCATTTTTACCATGTT
1 TCATGCATTTATACCATGTT
*
1417342 TCATGCATTTATAGCATGT
1 TCATGCATTTATACCATGT
1417361 CCAGCACCTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.23, C:0.18, G:0.13, T:0.46
Consensus pattern (20 bp):
TCATGCATTTATACCATGTT
Found at i:1425524 original size:32 final size:32
Alignment explanation
Indices: 1425484--1425553 Score: 95
Period size: 32 Copynumber: 2.2 Consensus size: 32
1425474 CGTTGCGATA
* *
1425484 GATACATAAGTGTTGTATCAATACAATGTATC
1 GATACATAAATATTGTATCAATACAATGTATC
* *
1425516 GATACATAAATATTGTATCGATGCAATGTATC
1 GATACATAAATATTGTATCAATACAATGTATC
*
1425548 GCTACA
1 GATACA
1425554 AAGCTGCTGC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (32 bp):
GATACATAAATATTGTATCAATACAATGTATC
Found at i:1425610 original size:13 final size:13
Alignment explanation
Indices: 1425592--1425619 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
1425582 CTTTACTCAA
1425592 TGTATCGATACAT
1 TGTATCGATACAT
1425605 TGTATCGATACAT
1 TGTATCGATACAT
1425618 TG
1 TG
1425620 ATCTTTCTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1430928 original size:55 final size:55
Alignment explanation
Indices: 1430862--1430971 Score: 220
Period size: 55 Copynumber: 2.0 Consensus size: 55
1430852 GATGATGGAG
1430862 TCGTTGTTGGAAATCCTTGTACTTTCCTTGCCTACTTTATGTAAATATCAAGAAA
1 TCGTTGTTGGAAATCCTTGTACTTTCCTTGCCTACTTTATGTAAATATCAAGAAA
1430917 TCGTTGTTGGAAATCCTTGTACTTTCCTTGCCTACTTTATGTAAATATCAAGAAA
1 TCGTTGTTGGAAATCCTTGTACTTTCCTTGCCTACTTTATGTAAATATCAAGAAA
1430972 ACCTACTTGC
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.40
Consensus pattern (55 bp):
TCGTTGTTGGAAATCCTTGTACTTTCCTTGCCTACTTTATGTAAATATCAAGAAA
Found at i:1433013 original size:31 final size:31
Alignment explanation
Indices: 1432975--1433064 Score: 153
Period size: 31 Copynumber: 2.9 Consensus size: 31
1432965 TCTCTTGTCC
*
1432975 CAAAGTCCACGACTTAGTGGCATCTTTTCTT
1 CAAAGTCCACGACTCAGTGGCATCTTTTCTT
* *
1433006 CAAAGTCCACAACTCAGTGGCATCTTTCCTT
1 CAAAGTCCACGACTCAGTGGCATCTTTTCTT
1433037 CAAAGTCCACGACTCAGTGGCATCTTTT
1 CAAAGTCCACGACTCAGTGGCATCTTTT
1433065 TTTTCTTTAA
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 54 1.00
ACGTcount: A:0.24, C:0.29, G:0.16, T:0.31
Consensus pattern (31 bp):
CAAAGTCCACGACTCAGTGGCATCTTTTCTT
Found at i:1433108 original size:28 final size:27
Alignment explanation
Indices: 1433069--1433184 Score: 124
Period size: 27 Copynumber: 4.0 Consensus size: 27
1433059 TCTTTTTTTT
*
1433069 CTTTAAAGCCCACAACTCCGTGGCACC
1 CTTTTAAGCCCACAACTCCGTGGCACC
1433096 CTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
1 CTTTT-AAGCCCACAACTCCGTGGCA--C-----C
*
1433131 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGCCCACAACTCCGTGGCACC
* *
1433158 CTTTTAAGTCCACAACTCCATGGCACC
1 CTTTTAAGCCCACAACTCCGTGGCACC
1433185 AATGTCGCTG
Statistics
Matches: 78, Mismatches: 3, Indels: 16
0.80 0.03 0.16
Matches are distributed among these distances:
27 31 0.40
28 20 0.26
30 1 0.01
32 1 0.01
34 19 0.24
35 6 0.08
ACGTcount: A:0.23, C:0.37, G:0.13, T:0.27
Consensus pattern (27 bp):
CTTTTAAGCCCACAACTCCGTGGCACC
Found at i:1433147 original size:34 final size:35
Alignment explanation
Indices: 1433095--1433162 Score: 111
Period size: 34 Copynumber: 2.0 Consensus size: 35
1433085 TCCGTGGCAC
*
1433095 CCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
1 CCTTTTAAAGCCCACAACTCCGTGGCACCCTTTTT
*
1433130 CCTTTT-AAGTCCACAACTCCGTGGCACCCTTTT
1 CCTTTTAAAGCCCACAACTCCGTGGCACCCTTTT
1433163 AAGTCCACAA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 25 0.81
35 6 0.19
ACGTcount: A:0.19, C:0.35, G:0.12, T:0.34
Consensus pattern (35 bp):
CCTTTTAAAGCCCACAACTCCGTGGCACCCTTTTT
Found at i:1433150 original size:62 final size:62
Alignment explanation
Indices: 1432976--1433183 Score: 217
Period size: 62 Copynumber: 3.4 Consensus size: 62
1432966 CTCTTGTCCC
* ** * * * *
1432976 AAAGTCCACGACTTAGTGGCA-TC-TTTT-CTTCAAAGTCCACAACTCAGTGGCATCTTTCCTT
1 AAAGTCCACAACTCCGTGGCACTCTTTTTCCTTTAAAGTCCACAACTCCGTGGCACCCTT--TT
* * * * *
1433037 CAAAGTCCACGACTCAGTGGCATCTTTTTTTTCTTTAAAGCCCACAACTCCGTGGCACCCTTTT
1 -AAAGTCCACAACTCCGTGGCA-CTCTTTTTCCTTTAAAGTCCACAACTCCGTGGCACCCTTTT
* *
1433101 AAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTT
1 AAAGTCCACAACTCCGTGGCACTCTTTTTCCTTTAAAGTCCACAACTCCGTGGCACCCTTTT
*
1433163 -AAGTCCACAACTCCATGGCAC
1 AAAGTCCACAACTCCGTGGCAC
1433184 CAATGTCGCT
Statistics
Matches: 126, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
61 19 0.15
62 57 0.45
63 18 0.14
64 3 0.02
65 4 0.03
66 25 0.20
ACGTcount: A:0.24, C:0.32, G:0.14, T:0.30
Consensus pattern (62 bp):
AAAGTCCACAACTCCGTGGCACTCTTTTTCCTTTAAAGTCCACAACTCCGTGGCACCCTTTT
Found at i:1433618 original size:52 final size:50
Alignment explanation
Indices: 1433549--1438373 Score: 2436
Period size: 49 Copynumber: 101.8 Consensus size: 50
1433539 CACATAGGCA
* * * ** *
1433549 TAAGCCCAATGTTGCTGGCCTTGAATTAGCACATCAGCACCTCAACCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTC--TCATCTT
1433601 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCT-TCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* *
1433650 TAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCGTCATCTC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC-TC-TCATCTT
* * *
1433702 TAAGACCAATGTTGCTGGCCTTGAATCAGCACATTGGCATCT-TCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * * ** * * * *
1433751 TAATTCTAATATCATTGGCCTTGAATCAACATATTGGCACAT-T-GTCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * *
1433799 TAAGACCAATGTCGCTGCCCTTGAATCAGCACATTGGCA-CTTTCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * * * * * *
1433848 TAAGTCCAATATCGTTGGCCTTGCATCAGCATATTGGCATCTTTAACAT-TCC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCT--CATCT-T
* * ** *
1433900 TAAGCCCAATGTCGCTGGCTTTGTCTCAGCACATTGGCA--T-TCTTCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* ** *
1433947 CAAGTATAATGTCGCTGGCCATGAATCAGCACATT-G------TC--C--
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * * * * *
1433986 TAAGCCCAATATCGCTAGCCTTGAATCAGCATATTGGCA-CT-TCGTCTC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * *
1434034 TAAGACCAATGTCGTTGGCCTTGAATCAGCACATAGG-------CA----
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* ** * *
1434073 TAAGCCCAATGTCATTGGCCTTGAATCAACATATTGG-------CA-C--
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * * * *
1434113 -AAGCCCAGTATCGCTGGCCTTGAATCAGCATATTGACACCT-TCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * * *
1434161 TAAGACCAATGTCGCTGGCCTTGAATCAGCATATCGGCACCTCAACCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTC--TCATCTT
** *
1434213 TAAGTTAAATGTCGCTGGCCTTGAATCAGTACATTGGCACCT-TCAT-TT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * * *
1434261 TGAAGTCCAATATCGCTGGCCGTGAATCAGCACATTGGCGCCTTCGTCATCTC
1 T-AAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC-TC-TCATCTT
* * * **
1434314 TAAGACCAATCTTAG-TGGCCTTGAATCAGCACATTGGCATAT-TCATCTT
1 TAAGTCCAAT-GTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * * *
1434363 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACAT-T-GTCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * *
1434411 TAAGACCAATGTCGCTGGCCTTGAATCAGTACATTAGCACCT-TCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * * * * *
1434460 TAAGTCCAATATCGTTGGCCTT-ACATCAGCATATTGGCATCTTTAACAT-TCC
1 TAAGTCCAATGTCGCTGGCCTTGA-ATCAGCACATTGGCACCTCT--CATCT-T
* * * * *
1434512 TAAG-CCTAATGTCACTGGCCTT-ATCTCAGCATATTGG-A-AT-TCTTCTT
1 TAAGTCC-AATGTCGCTGGCCTTGA-ATCAGCACATTGGCACCTCTCATCTT
* * * * * * *
1434559 CAAGTCTAATGTCACCGGCCATGAATTAGCACATTGG-------GA----
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * * * * *
1434598 TAAGCCCAATATCGTTGGTCTTGAATCAGCATATTGGCAGCTCGTC-TC--
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTC-TCATCTT
*
1434646 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGG-------CA----
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * *
1434685 TAAGCCCAATGTCGCTGGCCTTGAATCA--ACA----CA--T-T-AGC-A
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * * *
1434724 TAAGCCCAATGTCACTGGCCTTGAATCAGCACATCGGCACCTCAACCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTC--TCATCTT
*
1434776 TAAGTCGAATGTCGCTGGCCTTGAATCAGCACATTGGCACCT-TCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * * * *
1434825 TAAGTCCAATATCGCTGGCCTTGAATCATCACATTGGCGCCTTCGTTATCTC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC-TC-TCATCTT
* *
1434877 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATCT-TCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * * * *
1434926 TAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACAT-T-GTCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * *
1434974 TAAGACCAATGTCGCGGGCCTTGAATCAGCACATTGGCA-CTTTCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * * * * * * *
1435023 TAAGTCCAATATCGTTGGCTTTGCATCAGCATATTGGCATCTTTAACAT-TCC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCT--CATCT-T
* * * * ** *
1435075 TAAGCCCAATCTCGCTAGCTTTGTCTCAGCACATTGGCA--T-TCTTCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * * *
1435122 CAAGTCTAATGTCACTGGCCATGAATCAGCACATT-G------TCA----
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * * * *
1435161 TAAG-CCTAATATCGTTGGCCTTGAATCAGCATATTGGCA-CT-TCGTCTC
1 TAAGTCC-AATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * *
1435209 TAAGACTAATGTCGCTGGCCTTGAATCAGCACATAGG-------CA----
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * * ** *
1435248 TAAGCCCAATGTTGCTGGCCTTGAATTAGCACATCAGCACCTCAACCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTC--TCATCTT
1435300 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCT-TCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * *
1435349 TAAGTCCAATATCGTTGGCCTTGAATCAGCACATTGGCACCTTCGTCATCTC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC-TC-TCATCTT
* *
1435401 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATCT-TCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * * * *
1435450 TAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCACAT-T-GTCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * * *
1435498 TAAGACCAATGTCGCGGGCCTTGAATCAGCATATTGGCA-CTTTCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * * * * *
1435547 TAAGTCCAATATCGTTGG-CTCT-ACATCAGCATATTGGCATCTTTAACAT-TCC
1 TAAGTCCAATGTCGCTGGCCT-TGA-ATCAGCACATTGGCACCTCT--CATCT-T
* * * * *
1435599 TAAGCCCAATATCGCAGGCCTTGAATCAGCATATTGGCA-CT-TCATCTC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* *
1435647 TAAGACCAATGTCACTGGCCTTGAATCAGCACATTGG-------CA----
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * * * * * ** *
1435686 TAAG-CCAAATATCACTGGCCTTAAAGCAGCATATTGGCA--TTTTGTCTC
1 TAAGTCC-AATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * ** *
1435734 TAAGACCAATATCAATGGCCTTGAATCAGCATATTGG-------CA----
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * * ** *
1435773 TAAGCCCAATGTTGCTGGCCTTGAATTAGCACATCAGCACCTCAACCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTC--TCATCTT
1435825 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCT-TCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
*
1435874 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCT-TCGTCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * * * * *
1435923 TAAGTCCAATATTGTTGGCCTTGAATCAGCATATTGGCA-CT-TCGTCTC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* *
1435971 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATAGG-------CA----
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* ** * *
1436010 TAAGCCCAATGTCATTGGCCTTGAATCAACATATTGG-------CA-C--
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * * * *
1436050 -AAGCCCAGTATCGCTGGCCTTGAATCAGCATATTGACACCT-TCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
** * * * * *
1436098 TAAAACCAATGTCGCTGGCCTTGAATCAGTATATCGGCACCTCAACCATTTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTC--TCATCTT
** * *
1436150 TAAGTTAAATGTCGCTGGCCTTGAATCAGTACATTGGCACCT-TCATTTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * * * *
1436199 TAAGTCCAATATCGCTGGCCGTGAATCAGCACTTTGGCGCCTTCGTCATCTC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC-TC-TCATCTT
* * * **
1436251 TACGACCAATGTTAG-TGGCCTTGAATCAGCACATTGGCATAT-TCATCTT
1 TAAGTCCAATG-TCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * * ** *
1436300 TAAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCAAAT-T-GTCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * *
1436348 TAAGACCAATGTCGCTGGCCTTGAATCAGTACATTGGCACCT-TTATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* ** * * * *
1436397 TAAGTCCAATATCATTGGCCTTGCATCAGCATATTGGCATCAT-TAACAT-TCC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-CCTCT--CATCT-T
* * * **
1436449 TAAG-CCTAATGTCACTGGCCTT-ATCTCAGCATATTGGCA--T-TTTTCTT
1 TAAGTCC-AATGTCGCTGGCCTTGA-ATCAGCACATTGGCACCTCTCATCTT
* * * * * * *
1436496 CAAGTCTAATGTCACCGGCCATGAATTAGCACATTGG-------GA----
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * * * * *
1436535 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCA-GT-TCGTCTC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
*
1436583 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGG-------CA----
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * * *
1436622 TAAGCCCAATGTTGCTGGCCTTGAATCA--ACA----CA--T-T-AGC-A
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * * * *
1436661 TAAGCCCAATGTCGCAT-GCCTTAAATCAGCACATCGGCACTTCAACCATCTT
1 TAAGTCCAATGTCGC-TGGCCTTGAATCAGCACATTGGCACCTC--TCATCTT
*
1436713 TAAGTCGAATGTCGCTGGCCTTGAATCAGCACATTGGCACCT-TCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * * *
1436762 TAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCGCCTTCGTTATCTC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC-TC-TCATCTT
* *
1436814 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATCT-TCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * * * *
1436863 TAAGTCCAATATCGCTAGCCTTGAATTAGCATATTGGCACAT-T-ATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * *
1436911 TAAGACCAATGTCGCGGGCCTTGAATCAGCACATTGGCA-CTTTCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * * * * * * *
1436960 TAAGTCCAATATCGTTGGCTTTGCATCAGCATATTGGCATCTTTAACAT-TCC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCT--CATCT-T
* * ** *
1437012 TAAGCCCAATGTCGCTGGCTTTGTCTCAGCACATTGGCA--T-TCTTCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * * * *
1437059 CAAGTCTAATGTCACTAGCCATGAATCAGCACATT-G------TCA----
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * * * * * *
1437098 TAAGCCCAATATCGTTGGCCTTGAATGAGCATATTGGCA-CT-TCGTCTC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * * *
1437146 TAAGACCAATGTTGCTGGCCTTGAATCAGTACATAGG-------CA----
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* *
1437185 TAAGCCCAATGTTGCTGGCCTTGAATCAGCACATTGG-------CA-C--
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * * *
1437225 -AAGCCCAATATCGCTGGTCTTGAATCAGCATATTGGCACCT-TCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * * *
1437273 TAAGACCAATGTCGCTGGCCTTGAATCAACATATTGGCACCT-TAACCATTTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCT---CATCTT
* * *
1437325 TAAGTCCAATATCGTTGGCCTTGAATCAGCACATTAGCACCT-TCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * * *
1437374 TAAGTCCAATATCGCTGGCCTTGAATTAGCACATTGGCGCCTTCGTCATCTC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC-TC-TCATCTT
* * * * *** *
1437426 TAAGACCAATGTCGCTAGCCTGGAATCAACACATTGGCTTAT-TAATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * * * *
1437475 TAAGTCCAATATCGCTGGCCTTGAATTAGCATATTGGCACAT-T-GTCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * * * *
1437523 TAAGACTAGTGTCACTGGCCTTGAATCAGCACGTTGGCACCT-TCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * * * * * *
1437572 TAAGTCCAATATCGTTGGCCTTGCATCAGCATATTGGCATCTTTAACAT-TCC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCT--CATCT-T
* ** *
1437624 TAAGCCCAATGTCGCTGGCCTTGTCTTAGCACATTGGCA--T-T-ATTCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCA-TCTT
* * * *
1437671 CAAGTCTAATGTCACTGGCCATGAATCAGCACATTGGCA----T-A----
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * * * * *
1437712 -AA-CCCAATATCACTGGCCTTGAATCAGCATATTGGCA-CT-TCGTCTC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * *
1437758 TAAGACCAATGTCGTTGGCTTTGAATCAGCACATTGG-------CA----
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* *
1437797 TAAGCCCAATGTCGTTGGCCTTGAATCAGCACATTGG-------CA-C--
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * * * * *
1437837 -AAGCCCAGTATCGCTGGCCTTGAATCAGTATATTGGCACCT-TCATTTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * * * * *
1437885 TAAGACTATTGTCGCTGGCCTTGATTTC-GCACATCGGCACCTCAACCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGA-ATCAGCACATTGGCACCTC--TCATCTT
* *
1437937 TAAGTCCAATGTCGCTGGCCTTGAATTAGTACATTGGCACCT-TCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * * * *
1437986 TAAGTCCAATATTGCTGGCCTTGAATTAGCACATTGGCGCCTTCGTCATCTC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC-TC-TCATCTT
* * * * * *
1438038 TAAGACCAATGTTGCTAGCCTTGAATCAGCACATTGGTATCT-TCACCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * * * *
1438087 TAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACAT-T-GTCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* *
1438135 TAAGACCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCT-TCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
* * * * * * *
1438184 TAAGTCCAATATCGTTGGCCTTGCATCAGCATATTGGCATCTTTAACAT-TCC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCT--CATCT-T
* ** * * *
1438236 TAAGCCCAATGTCGCTGGCCTTGTCTCAGTATATTGGCA--T-TCTTCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
** * * * *
1438283 CGAGTCTAATGTTGCTGG-CTATGAATCAGCACATTGGCATTCTTCACATCTT
1 TAAGTCCAATGTCGCTGGCCT-TGAATCAGCACATTGGCA--CCTCTCATCTT
* * ** *
1438335 TAAGCCCAATATCATTGGTCC-TGAATCAGCATATTGGCA
1 TAAGTCCAATGTCGCTGG-CCTTGAATCAGCACATTGGCA
1438374 TTTTATCACT
Statistics
Matches: 3769, Mismatches: 706, Indels: 596
0.74 0.14 0.12
Matches are distributed among these distances:
36 2 0.00
37 6 0.00
38 3 0.00
39 618 0.16
40 7 0.00
41 8 0.00
43 14 0.00
44 6 0.00
45 12 0.00
46 12 0.00
47 208 0.06
48 627 0.17
49 1197 0.32
50 39 0.01
51 30 0.01
52 970 0.26
53 9 0.00
54 1 0.00
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (50 bp):
TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTCATCTT
Found at i:1433729 original size:101 final size:99
Alignment explanation
Indices: 1433549--1438321 Score: 2554
Period size: 101 Copynumber: 50.4 Consensus size: 99
1433539 CACATAGGCA
* * * ** *** *
1433549 TAAGCCCAATGTTGCTGGCCTTGAATTAGCACATCAGCACCTCAACCATCTTTAAGTCCAATGTC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-CT-TGTCATCTCTAAGTCCAATGTC
1433614 GCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
64 GCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
1433650 TAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCGTCATCTCTAAGACCAATGTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-CTT-GTCATCTCTAAGTCCAATGTC
*
1433715 GCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
64 GCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * ** * * *
1433751 TAATTCTAATATCATTGGCCTTGAATCAACATATTGGCACATTGTC-T-T-TAAGACCAATGTCG
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC-TTGTCATCTCTAAGTCCAATGTCG
* *
1433813 CTGCCCTTGAATCAGCACATTGGCACTTTCATCTT
65 CTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * * *
1433848 TAAGTCCAATATCGTTGGCCTTGCATCAGCATATTGGCATCTT-TAACAT-TCCTAAGCCCAATG
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-CTTGT--CATCT-CTAAGTCCAATG
* ** *
1433911 TCGCTGGCTTTGTCTCAGCACATTGGCA--TTCTTCTT
62 TCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* ** * * *
1433947 CAAGTATAATGTCGCTGGCCATGAATCAG--CA----CA-TTG---TC-CTAAGCCCAATATCGC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTGTCATCTCTAAGTCCAATGTCGC
* * * *
1434001 TAGCCTTGAATCAGCATATTGGCA-CTTCGTCTC
66 TGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * * **
1434034 TAAGACCAATGTCGTTGGCCTTGAATCAGCACA-T---A---GGCA----TAAGCCCAATGTCAT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTGTCATCTCTAAGTCCAATGTCGC
* *
1434088 TGGCCTTGAATCAACATATTGG------CA-C--
66 TGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * * * * * *
1434113 -AAGCCCAGTATCGCTGGCCTTGAATCAGCATATTGACACCT-TCATCTTTAAGACCAATGTCGC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTGTCATCTCTAAGTCCAATGTCGC
* * *
1434176 TGGCCTTGAATCAGCATATCGGCACCTCAACCATCTT
66 TGGCCTTGAATCAGCACATTGGCACCT---TCATCTT
** * * * *
1434213 TAAGTTAAATGTCGCTGGCCTTGAATCAGTACATTGGCACCT-TCAT-TTTGAAGTCCAATATCG
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTGTCATCTCT-AAGTCCAATGTCG
* * *
1434276 CTGGCCGTGAATCAGCACATTGGCGCCTTCGTCATCTC
65 CTGGCCTTGAATCAGCACATTGGCACC-T--TCATCTT
* * * * *
1434314 TAAGACCAATCTTAG-TGGCCTTGAATCAGCACATTGGCA-TAT-TCATCTTTAAGTCCAATATC
1 TAAGTCCAAT-GTCGCTGGCCTTGAATCAGCACATTGGCACT-TGTCATCTCTAAGTCCAATGTC
* * *
1434376 GCTGGCCTTGAATCAGCATATTGGCACATT-GTCTT
64 GCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * * * * *
1434411 TAAGACCAATGTCGCTGGCCTTGAATCAGTACATTAGCACCT-TCATCTTTAAGTCCAATATCGT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTGTCATCTCTAAGTCCAATGTCGC
* * * *
1434475 TGGCCTT-ACATCAGCATATTGGCATCTTTAACATT
66 TGGCCTTGA-ATCAGCACATTGGCACCTTCATC-TT
* * * * * *
1434510 CCTAAG-CCTAATGTCACTGGCCTT-ATCTCAGCATATTGG-A-AT-TCTTCT-TCAAGTCTAAT
1 --TAAGTCC-AATGTCGCTGGCCTTGA-ATCAGCACATTGGCACTTGTCATCTCT-AAGTCCAAT
* * * * *
1434569 GTCACCGGCCATGAATTAGCACATTGG------GA----
61 GTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * * * * *
1434598 TAAGCCCAATATCGTTGGTCTTGAATCAGCATATTGGCA---GCTCGTCTCTAAGACCAATGTCG
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTG-TCATCTCTAAGTCCAATGTCG
1434660 CTGGCCTTGAATCAGCACATTGG------CA----
65 CTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * *
1434685 TAAGCCCAATGTCGCTGGCCTTGAATCAACACATT---A---G-CA----TAAGCCCAATGTCAC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTGTCATCTCTAAGTCCAATGTCGC
* *
1434739 TGGCCTTGAATCAGCACATCGGCACCTCAACCATCTT
66 TGGCCTTGAATCAGCACATTGGCACCT---TCATCTT
* * * *
1434776 TAAGTCGAATGTCGCTGGCCTTGAATCAGCACATTGGCACCT-TCATCTTTAAGTCCAATATCGC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTGTCATCTCTAAGTCCAATGTCGC
* * *
1434840 TGGCCTTGAATCATCACATTGGCGCCTTCGTTATCTC
66 TGGCCTTGAATCAGCACATTGGCACCTTC---ATCTT
* * *
1434877 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-TCT-TCATCTTTAAGTCCAATATCG
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACT-TGTCATCTCTAAGTCCAATGTCG
* * * *
1434940 CTAGCCTTGAATCAGCATATTGGCACATT-GTCTT
65 CTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * * *
1434974 TAAGACCAATGTCGCGGGCCTTGAATCAGCACATTGGCACTT-TCATCTTTAAGTCCAATATCGT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTGTCATCTCTAAGTCCAATGTCGC
* * * * * *
1435038 TGGCTTTGCATCAGCATATTGGCATCTTTAACATT
66 TGGCCTTGAATCAGCACATTGGCACCTTCATC-TT
* * * * ** * *
1435073 CCTAAGCCCAATCTCGCTAGCTTTGTCTCAGCACATTGGCA--T-TCTTCT-TCAAGTCTAATGT
1 --TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTGTCATCTCT-AAGTCCAATGT
* *
1435134 CACTGGCCATGAATCAGCACATT-G-----TCA----
63 CGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * * * *
1435161 TAAG-CCTAATATCGTTGGCCTTGAATCAGCATATTGGCAC-T-TCGTCTCTAAGACTAATGTCG
1 TAAGTCC-AATGTCGCTGGCCTTGAATCAGCACATTGGCACTTGTCATCTCTAAGTCCAATGTCG
*
1435223 CTGGCCTTGAATCAGCACATAGG------CA----
65 CTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * ** *** *
1435248 TAAGCCCAATGTTGCTGGCCTTGAATTAGCACATCAGCACCTCAACCATCTTTAAGTCCAATGTC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-CT-TGTCATCTCTAAGTCCAATGTC
1435313 GCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
64 GCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
1435349 TAAGTCCAATATCGTTGGCCTTGAATCAGCACATTGGCACCTTCGTCATCTCTAAGACCAATGTC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-CTT-GTCATCTCTAAGTCCAATGTC
*
1435414 GCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
64 GCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * *
1435450 TAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCACATTGTC-T-T-TAAGACCAATGTCG
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC-TTGTCATCTCTAAGTCCAATGTCG
* * *
1435512 CGGGCCTTGAATCAGCATATTGGCACTTTCATCTT
65 CTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * *
1435547 TAAGTCCAATATCGTTGG-CTCT-ACATCAGCATATTGGCATCTT-TAACAT-TCCTAAGCCCAA
1 TAAGTCCAATGTCGCTGGCCT-TGA-ATCAGCACATTGGCA-CTTGT--CATCT-CTAAGTCCAA
* * * *
1435608 TATCGCAGGCCTTGAATCAGCATATTGGCA-CTTCATCTC
60 TGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * *
1435647 TAAGACCAATGTCACTGGCCTTGAATCAGCACATT-G-----G-CA----TAAG-CCAAATATCA
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTGTCATCTCTAAGTCC-AATGTCG
* * * * ** *
1435700 CTGGCCTTAAAGCAGCATATTGGCA-TTTTGTCTC
65 CTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * ** * * *
1435734 TAAGACCAATATCAATGGCCTTGAATCAG--CA-T---A-TTGGCA----TAAGCCCAATGTTGC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTGTCATCTCTAAGTCCAATGTCGC
* ** *
1435788 TGGCCTTGAATTAGCACATCAGCACCTCAACCATCTT
66 TGGCCTTGAATCAGCACATTGGCACCT---TCATCTT
* *
1435825 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCT-TCATCTTTAAGTCCAATGTCGC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTGTCATCTCTAAGTCCAATGTCGC
*
1435889 TGGCCTTGAATCAGCACATTGGCACCTTCGTCTT
66 TGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * * * *
1435923 TAAGTCCAATATTGTTGGCCTTGAATCAGCATATTGGCAC-T-TCGTCTCTAAGACCAATGTCGC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTGTCATCTCTAAGTCCAATGTCGC
*
1435986 TGGCCTTGAATCAGCACATAGG------CA----
66 TGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* ** * * * *
1436010 TAAGCCCAATGTCATTGGCCTTGAATCA--ACA-T---A-TTGGCA---C-AAGCCCAGTATCGC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTGTCATCTCTAAGTCCAATGTCGC
* *
1436064 TGGCCTTGAATCAGCATATTGACACCTTCATCTT
66 TGGCCTTGAATCAGCACATTGGCACCTTCATCTT
** * * * *** * * **
1436098 TAAAACCAATGTCGCTGGCCTTGAATCAGTATATCGGCACCTCAACCATTTTTAAGTTAAATGTC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-CT-TGTCATCTCTAAGTCCAATGTC
* *
1436163 GCTGGCCTTGAATCAGTACATTGGCACCTTCATTTT
64 GCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * * * *
1436199 TAAGTCCAATATCGCTGGCCGTGAATCAGCACTTTGGCGCCTTCGTCATCTCTACGACCAATGTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGC-ACTT-GTCATCTCTAAGTCCAATG-T
* **
1436264 AG-TGGCCTTGAATCAGCACATTGGCATATTCATCTT
63 CGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * * *
1436300 TAAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCAAATTGTC-T-T-TAAGACCAATGTCG
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGC-ACTTGTCATCTCTAAGTCCAATGTCG
* *
1436362 CTGGCCTTGAATCAGTACATTGGCACCTTTATCTT
65 CTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* ** * * **
1436397 TAAGTCCAATATCATTGGCCTTGCATCAGCATATTGGCATCATTAACAT-TCCTAAG-CCTAATG
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-C-TTGTCATCT-CTAAGTCC-AATG
* * * **
1436460 TCACTGGCCTT-ATCTCAGCATATTGGCA--TTTTTCTT
62 TCGCTGGCCTTGA-ATCAGCACATTGGCACCTTCATCTT
* * * * * * * *
1436496 CAAGTCTAATGTCACCGGCCATGAATTAGCACATTGG-----G--A----TAAGCCCAATATCGC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTGTCATCTCTAAGTCCAATGTCGC
* * * *
1436550 TGGCCTTGAATCAGCATATTGGCA-GTTCGTCTC
66 TGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
1436583 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATT-G-----G-CA----TAAGCCCAATGTTGC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTGTCATCTCTAAGTCCAATGTCGC
* *
1436637 TGGCCTTGAATCA--ACA----CA--TT-AGC-A
66 TGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * ** * *
1436661 TAAGCCCAATGTCGCAT-GCCTTAAATCAGCACATCGGCACTTCAACCATCTTTAAGTCGAATGT
1 TAAGTCCAATGTCGC-TGGCCTTGAATCAGCACATTGGCACTT--GTCATCTCTAAGTCCAATGT
1436725 CGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
63 CGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * *
1436762 TAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCGCCTTCGTTATCTCTAAGACCAATGTC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGC-ACTT-GTCATCTCTAAGTCCAATGTC
*
1436827 GCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
64 GCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * * * * *
1436863 TAAGTCCAATATCGCTAGCCTTGAATTAGCATATTGGCACAT-T-ATCTTTAAGACCAATGTCGC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTGTCATCTCTAAGTCCAATGTCGC
* *
1436926 GGGCCTTGAATCAGCACATTGGCACTTTCATCTT
66 TGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * * * *
1436960 TAAGTCCAATATCGTTGGCTTTGCATCAGCATATTGGCATCTT-TAACAT-TCCTAAGCCCAATG
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-CTTGT--CATCT-CTAAGTCCAATG
* ** *
1437023 TCGCTGGCTTTGTCTCAGCACATTGGCA--TTCTTCTT
62 TCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * * * * * *
1437059 CAAGTCTAATGTCACTAGCCATGAATCAG--CA----CA-TTGTCA----TAAGCCCAATATCGT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTGTCATCTCTAAGTCCAATGTCGC
* * * *
1437113 TGGCCTTGAATGAGCATATTGGCA-CTTCGTCTC
66 TGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * * * *
1437146 TAAGACCAATGTTGCTGGCCTTGAATCAGTACA-T---A---GGCA----TAAGCCCAATGTTGC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTGTCATCTCTAAGTCCAATGTCGC
1437200 TGGCCTTGAATCAGCACATTGG------CA-C--
66 TGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * * * * *
1437225 -AAGCCCAATATCGCTGGTCTTGAATCAGCATATTGGCACCT-TCATCTTTAAGACCAATGTCGC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTGTCATCTCTAAGTCCAATGTCGC
* * *
1437288 TGGCCTTGAATCAACATATTGGCACCTTAACCATTTT
66 TGGCCTTGAATCAGCACATTGGCACCTT---CATCTT
* * * * * *
1437325 TAAGTCCAATATCGTTGGCCTTGAATCAGCACATTAGCACCT-TCATCTTTAAGTCCAATATCGC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTGTCATCTCTAAGTCCAATGTCGC
* * *
1437389 TGGCCTTGAATTAGCACATTGGCGCCTTCGTCATCTC
66 TGGCCTTGAATCAGCACATTGGCACC-T--TCATCTT
* * * * * * * *
1437426 TAAGACCAATGTCGCTAGCCTGGAATCAACACATTGG--CTTATTAATCTTTAAGTCCAATATCG
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTT-GTCATCTCTAAGTCCAATGTCG
* * * *
1437489 CTGGCCTTGAATTAGCATATTGGCACATT-GTCTT
65 CTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * * * * * * *
1437523 TAAGACTAGTGTCACTGGCCTTGAATCAGCACGTTGGCACCT-TCATCTTTAAGTCCAATATCGT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTGTCATCTCTAAGTCCAATGTCGC
* * * * *
1437587 TGGCCTTGCATCAGCATATTGGCATCTTTAACATT
66 TGGCCTTGAATCAGCACATTGGCACCTTCATC-TT
* ** * * *
1437622 CCTAAGCCCAATGTCGCTGGCCTTGTCTTAGCACATTGGCA-TTAT--TCT-TCAAGTCTAATGT
1 --TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTGTCATCTCT-AAGTCCAATGT
* *
1437683 CACTGGCCATGAATCAGCACATTGGCA---T-A----
63 CGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * * * * *
1437712 -AA-CCCAATATCACTGGCCTTGAATCAGCATATTGGCAC-T-TCGTCTCTAAGACCAATGTCGT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTGTCATCTCTAAGTCCAATGTCGC
*
1437773 TGGCTTTGAATCAGCACATTGG------CA----
66 TGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * **
1437797 TAAGCCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACAAG-C--C-C--AGT---A--TCGC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTGTCATCTCTAAGTCCAATGTCGC
* * *
1437851 TGGCCTTGAATCAGTATATTGGCACCTTCATTTT
66 TGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * * * *** *
1437885 TAAGACTATTGTCGCTGGCCTTGATTTC-GCACATCGGCACCTCAACCATCTTTAAGTCCAATGT
1 TAAGTCCAATGTCGCTGGCCTTGA-ATCAGCACATTGGCA-CT-TGTCATCTCTAAGTCCAATGT
* *
1437949 CGCTGGCCTTGAATTAGTACATTGGCACCTTCATCTT
63 CGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * * * *
1437986 TAAGTCCAATATTGCTGGCCTTGAATTAGCACATTGGCGCCTTCGTCATCTCTAAGACCAATGTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGC-ACTT-GTCATCTCTAAGTCCAATGTC
* * * *
1438051 GCTAGCCTTGAATCAGCACATTGGTATCTTCACCTT
64 GCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * *
1438087 TAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACATTGTC-T-T-TAAGACCAATGTCG
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC-TTGTCATCTCTAAGTCCAATGTCG
*
1438149 TTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
65 CTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * * *
1438184 TAAGTCCAATATCGTTGGCCTTGCATCAGCATATTGGCATCTT-TAACAT-TCCTAAGCCCAATG
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-CTTGT--CATCT-CTAAGTCCAATG
** * * *
1438247 TCGCTGGCCTTGTCTCAGTATATTGGCA--TTCTTCTT
62 TCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
** * *
1438283 CGAGTCTAATGTTGCTGG-CTATGAATCAGCACATTGGCA
1 TAAGTCCAATGTCGCTGGCCT-TGAATCAGCACATTGGCA
1438322 TTCTTCACAT
Statistics
Matches: 3726, Mismatches: 639, Indels: 616
0.75 0.13 0.12
Matches are distributed among these distances:
78 169 0.05
79 6 0.00
80 3 0.00
81 6 0.00
82 6 0.00
83 2 0.00
84 12 0.00
85 11 0.00
86 191 0.05
87 515 0.14
88 130 0.03
89 9 0.00
90 6 0.00
91 131 0.04
92 1 0.00
93 13 0.00
94 3 0.00
95 1 0.00
96 17 0.00
97 703 0.19
98 73 0.02
99 250 0.07
100 68 0.02
101 1387 0.37
102 12 0.00
104 1 0.00
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (99 bp):
TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTGTCATCTCTAAGTCCAATGTCGC
TGGCCTTGAATCAGCACATTGGCACCTTCATCTT
Found at i:1434012 original size:39 final size:40
Alignment explanation
Indices: 1433958--1434147 Score: 152
Period size: 39 Copynumber: 4.6 Consensus size: 40
1433948 AAGTATAATG
* *
1433958 TCGCTGGCCATGAATCAGCACATTGTC-CTAAGCCCAATA
1 TCGCTGGCCTTGAATCAGCACATTGGCACTAAGCCCAATA
* * * *
1433997 TCGCTAGCCTTGAATCAGCATATTGGCACTTCGTCTCTAAGACCAATG
1 TCGCTGGCCTTGAATCAGCACATTGGCA--------CTAAGCCCAATA
* * *
1434045 TCGTTGGCCTTGAATCAGCACATAGGCA-TAAGCCCAATG
1 TCGCTGGCCTTGAATCAGCACATTGGCACTAAGCCCAATA
** * * *
1434084 TCATTGGCCTTGAATCAACATATTGGCAC-AAGCCCAGTA
1 TCGCTGGCCTTGAATCAGCACATTGGCACTAAGCCCAATA
*
1434123 TCGCTGGCCTTGAATCAGCATATTG
1 TCGCTGGCCTTGAATCAGCACATTG
1434148 ACACCTTCAT
Statistics
Matches: 121, Mismatches: 20, Indels: 20
0.75 0.12 0.12
Matches are distributed among these distances:
39 87 0.72
48 34 0.28
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (40 bp):
TCGCTGGCCTTGAATCAGCACATTGGCACTAAGCCCAATA
Found at i:1434078 original size:87 final size:87
Alignment explanation
Indices: 1433954--1434112 Score: 228
Period size: 87 Copynumber: 1.8 Consensus size: 87
1433944 CTTCAAGTAT
* * * * *
1433954 AATGTCGCTGGCCATGAATCAGCACATTGTCCTAAGCCCAATATCGCTAGCCTTGAATCAGCATA
1 AATGTCGCTGGCCATGAATCAGCACATAGGCATAAGCCCAATATCACTAGCCTTGAATCAACATA
1434019 TTGGCACTTCGTCTCTAAGACC
66 TTGGCACTTCGTCTCTAAGACC
* * * * *
1434041 AATGTCGTTGGCCTTGAATCAGCACATAGGCATAAGCCCAATGTCATTGGCCTTGAATCAACATA
1 AATGTCGCTGGCCATGAATCAGCACATAGGCATAAGCCCAATATCACTAGCCTTGAATCAACATA
1434106 TTGGCAC
66 TTGGCAC
1434113 AAGCCCAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
87 62 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (87 bp):
AATGTCGCTGGCCATGAATCAGCACATAGGCATAAGCCCAATATCACTAGCCTTGAATCAACATA
TTGGCACTTCGTCTCTAAGACC
Found at i:1434131 original size:563 final size:568
Alignment explanation
Indices: 1433193--1436010 Score: 2601
Period size: 563 Copynumber: 5.0 Consensus size: 568
1433183 CCAATGTCGC
* *
1433193 TGGCCTTGAATCAGCACATTGGCATC-TTCATCTTTAAGTCCAATATCGCTAGCCTTGAATCAGC
1 TGGCCTTGAATCAGCACATTGGCA-CATTCATCTTTAAGACCAATATCGCTGGCCTTGAATCAGC
* * *
1433257 ATATTGGCACATTGTCTTTAAGACCAATGTCGCGGGCCTTGAATCAGCACATTGGCA-CTTT--C
65 ATATTGGCACATTATCTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCATCTTTAAC
* * * * *
1433319 A-TCTTTAAGTCCAATATCGTTGGCTTTG-CATCAGCATATTGGCATCTTTAACATTCCTAAGCC
130 ATTC-CTAAGCCCAATATCGCTGGCCTTGACATCAGCATATTGGCATCTTT-ACATTCCTAAGCA
* * * * ** * *
1433382 CAATCTCGCTAGCTTTGTCTCAGCACATTGGCATTCTTCTTCAAGTCTAATGTCACTGGCCATGA
193 CAATGTCACTGGCCTTGAATCAGCACATTGG-A-TC-TCTTCAAGCCTAATATCACTGGCCATGA
*
1433447 ATCAGC--A----CATTGTCATAAG-CCTAATATCGTTGGCCTTGAATCAGCATATTGGCACTTC
255 ATCAGCATATTGGCATTGTCATAAGACC-AATATCGTTGGCCTTGAATCAGCATATAGGCA----
*
1433505 GTCTCTAAGACCAATGTCGCTGGCCTTGAATCAGCACATAGGCATAAGCCCAATGTTGCTGGCCT
315 -----TAAGACCAATGTCGCTGGCCTTGAATCAGCACATAGGCATAAGCCCAATGTCGCTGGCCT
1433570 TGAATTAGCACATCAGCACCTCAACCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACAT
375 TGAATTAGCACATCAGCACCT--ACCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACAT
1433635 TGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCGTCATC
438 TGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCGTCATC
* * ** *
1433700 TCTAAGACCAATGTTGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTTTAATTCTAATATCA
503 TCTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTCTAAGACCAATATCA
1433765 T
568 T
* * * * *
1433766 TGGCCTTGAATCAACATATTGGCACATT-GTCTTTAAGACCAATGTCGCTGCCCTTGAATCAGCA
1 TGGCCTTGAATCAGCACATTGGCACATTCATCTTTAAGACCAATATCGCTGGCCTTGAATCAGCA
* * * * * *
1433830 CATTGGCACTTTCATCTTTAAGTCCAATATCGTTGGCCTTGCATCAGCATATTGGCATCTTTAAC
66 TATTGGCACATT-ATCTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCATCTTTAAC
* * * * * *
1433895 ATTCCTAAGCCCAATGTCGCTGGCTTTGTC-TCAGCACATTGGCAT-TCTT-C-TT-C-AAGTAT
130 ATTCCTAAGCCCAATATCGCTGGCCTTGACATCAGCATATTGGCATCT-TTACATTCCTAAGCAC
* * * * * *
1433954 AATGTCGCTGGCCATGAATCAGCACATT-G-TC-C-T-AAGCCCAATATCGCTAGCCTTGAATCA
194 AATGTCACTGGCCTTGAATCAGCACATTGGATCTCTTCAAGCCTAATATCACTGGCCATGAATCA
* * * *
1434014 GCATATTGGCACTTCGTCTCTAAGACCAATGTCGTTGGCCTTGAATCAGCACATAGGCATAAGCC
259 GCATATTGGCA-TT-GTC-ATAAGACCAATATCGTTGGCCTTGAATCAGCATATAGGCATAAGAC
** * * * * * * * *
1434079 CAATGTCATTGGCCTTGAATCAACATATTGGCACAAGCCCAGTATCGCTGGCCTTGAATCAGCAT
321 CAATGTCGCTGGCCTTGAATCAGCACATAGGCATAAGCCCAATGTCGCTGGCCTTGAATTAGCAC
* * * * * *
1434144 AT-TGACACCT-TCATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATCGGCACCTCAAC
386 ATCAG-CACCTACCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCT---T
** * * * *
1434207 CATCTTTAAGTTAAATGTCGCTGGCCTTGAATCAGTACATTGGCACC-T--TCAT-TTTGAAGTC
447 CATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCGTCATCTCT-AAGAC
* * * * * * *
1434268 CAATATCGCTGGCCGTGAATCAGCACATTGGCGCCTTCGTCATCTCTAAGACCAATCTTAG
511 CAATGTCGCTGGCCTTGAATCAGCACATT-G-G-CATCTTCATCTCTAAGACCAATATCAT
* *
1434329 TGGCCTTGAATCAGCACATTGGCATATTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCA
1 TGGCCTTGAATCAGCACATTGGCACATTCATCTTTAAGACCAATATCGCTGGCCTTGAATCAGCA
* * * * * * *
1434394 TATTGGCACATTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGTACATTAGCACCTTCATC-
66 TATTGGCACATTATCTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCATCTTTAACA
* *
1434458 TT--TAAGTCCAATATCGTTGGCCTT-ACATCAGCATATTGGCATCTTTAACATTCCTAAGC-CT
131 TTCCTAAGCCCAATATCGCTGGCCTTGACATCAGCATATTGGCATCTTT-ACATTCCTAAGCAC-
* * * * *
1434519 AATGTCACTGGCCTT-ATCTCAGCATATTGGAATTCTTCTTCAAGTCTAATGTCACCGGCCATGA
194 AATGTCACTGGCCTTGA-ATCAGCACATTGG-A-TC-TCTTCAAGCCTAATATCACTGGCCATGA
* * * *
1434583 ATTAGCACATTGG----G--ATAAGCCCAATATCGTTGGTCTTGAATCAGCATATTGGCAGCTCG
255 ATCAGCATATTGGCATTGTCATAAGACCAATATCGTTGGCCTTGAATCAGCATA-T---AG---G
* *
1434642 TCTCTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATGTCGCTGGCCTT
313 -C-ATAAGACCAATGTCGCTGGCCTTGAATCAGCACATAGGCATAAGCCCAATGTCGCTGGCCTT
* * * * *
1434707 GAA-T--CA-A-CA-CA-TTAGCA----TAAGCCCAATGTCACTGGCCTTGAATCAGCACATCGG
376 GAATTAGCACATCAGCACCTACCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGG
* * *
1434761 CACCTCAACCATCTTTAAGTCGAATGTCGCTGGCCTTGAATCAGCACATTGGCACC-T--TCATC
441 CACCT---TCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCGTCATC
* * * * ** *
1434823 TTTAAGTCCAATATCGCTGGCCTTGAATCATCACATTGGCGCCTTCGTTATCTCTAAGACCAATG
503 TCTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATCTTC---ATCTCTAAGACCAATA
**
1434888 TCGC
565 TCAT
* *
1434892 TGGCCTTGAATCAGCACATTGGCATC-TTCATCTTTAAGTCCAATATCGCTAGCCTTGAATCAGC
1 TGGCCTTGAATCAGCACATTGGCA-CATTCATCTTTAAGACCAATATCGCTGGCCTTGAATCAGC
* * *
1434956 ATATTGGCACATTGTCTTTAAGACCAATGTCGCGGGCCTTGAATCAGCACATTGGCA-CTTT--C
65 ATATTGGCACATTATCTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCATCTTTAAC
* * * * *
1435018 A-TCTTTAAGTCCAATATCGTTGGCTTTG-CATCAGCATATTGGCATCTTTAACATTCCTAAGCC
130 ATTC-CTAAGCCCAATATCGCTGGCCTTGACATCAGCATATTGGCATCTTT-ACATTCCTAAGCA
* * * * ** * *
1435081 CAATCTCGCTAGCTTTGTCTCAGCACATTGGCATTCTTCTTCAAGTCTAATGTCACTGGCCATGA
193 CAATGTCACTGGCCTTGAATCAGCACATTGG-A-TC-TCTTCAAGCCTAATATCACTGGCCATGA
*
1435146 ATCAGC--A----CATTGTCATAAG-CCTAATATCGTTGGCCTTGAATCAGCATATTGGCACTTC
255 ATCAGCATATTGGCATTGTCATAAGACC-AATATCGTTGGCCTTGAATCAGCATATAGGCA----
* *
1435204 GTCTCTAAGACTAATGTCGCTGGCCTTGAATCAGCACATAGGCATAAGCCCAATGTTGCTGGCCT
315 -----TAAGACCAATGTCGCTGGCCTTGAATCAGCACATAGGCATAAGCCCAATGTCGCTGGCCT
1435269 TGAATTAGCACATCAGCACCTCAACCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACAT
375 TGAATTAGCACATCAGCACCT--ACCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACAT
*
1435334 TGGCACCTTCATCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCACATTGGCACCTTCGTCATC
438 TGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCGTCATC
* * *
1435399 TCTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTTTAAGTCCAATATCG
503 TCTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTCTAAGACCAATATCA
1435464 T
568 T
* * * *
1435465 TGGCCTTGAATCAGCATATTGGCACATT-GTCTTTAAGACCAATGTCGCGGGCCTTGAATCAGCA
1 TGGCCTTGAATCAGCACATTGGCACATTCATCTTTAAGACCAATATCGCTGGCCTTGAATCAGCA
* * * *
1435529 TATTGGCACTTTCATCTTTAAGTCCAATATCGTTGG-CTCT-ACATCAGCATATTGGCATCTTTA
66 TATTGGCACATT-ATCTTTAAGACCAATATCGCTGGCCT-TGA-ATCAGCACATTGGCATCTTTA
*
1435592 ACATTCCTAAGCCCAATATCGCAGGCCTTGA-ATCAGCATATTGGCA-C-TT-CA-TCTCTAAG-
128 ACATTCCTAAGCCCAATATCGCTGGCCTTGACATCAGCATATTGGCATCTTTACATTC-CTAAGC
* * * *
1435651 ACCAATGTCACTGGCCTTGAATCAGCACATTGG----CAT-AAGCCAAATATCACTGGCCTTAAA
192 A-CAATGTCACTGGCCTTGAATCAGCACATTGGATCTCTTCAAGCCTAATATCACTGGCCATGAA
* * ** *
1435711 GCAGCATATTGGCATTTTGTCTCTAAGACCAATATCAATGGCCTTGAATCAGCATATTGGCATAA
256 TCAGCATATTGGCA--TTGTC-ATAAGACCAATATCGTTGGCCTTGAATCAGCATATAGGCATAA
* * * * *
1435776 GCCCAATGTTGCTGGCCTTGAATTAGCACATCAGCACCTCAACCATCTTTAAGTCCAATGTCGCT
318 GACCAATGTCGCTGGCCTTGAATCAGCACAT-AG--------GCA----TAAGCCCAATGTCGCT
* ** *
1435841 GGCCTTGAATCAGCACATTGGCACCT-TCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCA
370 GGCCTTGAATTAGCACATCAGCACCTACCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCA
* * * *
1435905 CATTGGCACCTTCGTCTTTAAGTCCAATATTGTTGGCCTTGAATCAGCATATTGGCA-CTTCG--
435 CATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCGTC
*
1435967 -TCTCTAAGACCAATGTCGCTGGCCTTGAATCAGCACATAGGCAT
500 ATCTCTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCAT
1436011 AAGCCCAATG
Statistics
Matches: 1871, Mismatches: 241, Indels: 269
0.79 0.10 0.11
Matches are distributed among these distances:
555 1 0.00
556 1 0.00
559 4 0.00
560 119 0.06
561 5 0.00
562 13 0.01
563 679 0.36
564 132 0.07
565 32 0.02
566 5 0.00
567 8 0.00
568 4 0.00
569 7 0.00
570 51 0.03
571 32 0.02
572 164 0.09
573 307 0.16
574 105 0.06
575 2 0.00
576 158 0.08
577 42 0.02
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (568 bp):
TGGCCTTGAATCAGCACATTGGCACATTCATCTTTAAGACCAATATCGCTGGCCTTGAATCAGCA
TATTGGCACATTATCTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCATCTTTAACA
TTCCTAAGCCCAATATCGCTGGCCTTGACATCAGCATATTGGCATCTTTACATTCCTAAGCACAA
TGTCACTGGCCTTGAATCAGCACATTGGATCTCTTCAAGCCTAATATCACTGGCCATGAATCAGC
ATATTGGCATTGTCATAAGACCAATATCGTTGGCCTTGAATCAGCATATAGGCATAAGACCAATG
TCGCTGGCCTTGAATCAGCACATAGGCATAAGCCCAATGTCGCTGGCCTTGAATTAGCACATCAG
CACCTACCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAA
GTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCGTCATCTCTAAGACCAATGTCGCT
GGCCTTGAATCAGCACATTGGCATCTTCATCTCTAAGACCAATATCAT
Found at i:1434399 original size:150 final size:150
Alignment explanation
Indices: 1434121--1437709 Score: 975
Period size: 149 Copynumber: 25.2 Consensus size: 150
1434111 ACAAGCCCAG
* * * *
1434121 TATCGCTGGCCTTGAATCAGCATATTGACACC-T-TCATCTTTAAGACCAATGTCGCTGGCCTTG
1 TATCGCTGGCCTTGAATCAGCACATTGGCACCTTCTCATCTCTAAGACCAATGTAGCTGGCCTTG
* * * *
1434184 AATCAGCATATCGGCACCTCAACCATCTTTAAGTTAAATGTCGCTGGCCTTGAATCAGTACATTG
66 AATCAGCACATCGGCA-CTCAACCATCTTTAAGTCAAATATCGCTGGCCTTGAATCAGCACATTG
* *
1434249 GCACCTTCAT-TTTGAAGTCCAA
130 GCACATT-ATCTTT-AAGACCAA
* * *
1434271 TATCGCTGGCCGTGAATCAGCACATTGGCGCCTTCGTCATCTCTAAGACCAATCTTAG-TGGCCT
1 TATCGCTGGCCTTGAATCAGCACATTGGCACCTTC-TCATCTCTAAGACCAAT-GTAGCTGGCCT
* ** * *
1434335 TGAATCAGCACATTGGCA-T-ATTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATT
64 TGAATCAGCACATCGGCACTCAACCATCTTTAAGTCAAATATCGCTGGCCTTGAATCAGCACATT
*
1434398 GGCACATTGTCTTTAAGACCAA
129 GGCACATTATCTTTAAGACCAA
* * * * * * * *
1434420 TGTCGCTGGCCTTGAATCAGTACATTAGCACC-T-TCATCTTTAAGTCCAATATCGTTGGCCTT-
1 TATCGCTGGCCTTGAATCAGCACATTGGCACCTTCTCATCTCTAAGACCAATGTAGCTGGCCTTG
* * * * * * * * * *
1434482 ACATCAGCATATTGGCATCTTTAA-CAT-TCCTAAGCCTAATGTCACTGGCCTT-ATCTCAGCAT
66 A-ATCAGCACATCGGCA-C-TCAACCATCT-TTAAGTCAAATATCGCTGGCCTTGA-ATCAGCAC
* * * *
1434544 ATTGG-A-ATTCTTCTTCAAGTCTAA
126 ATTGGCACATT-ATCTTTAAGACCAA
* * * * * * * * * * *
1434568 TGTCACCGGCCATGAATTAGCACATTGG--------GA----TAAGCCCAATATCGTTGGTCTTG
1 TATCGCTGGCCTTGAATCAGCACATTGGCACCTTCTCATCTCTAAGACCAATGTAGCTGGCCTTG
* * * * * * *
1434621 AATCAGCATATTGGCAGCT----CGTCTCTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTG
66 AATCAGCACATCGGCA-CTCAACCATCTTTAAGTCAAATATCGCTGGCCTTGAATCAGCACATTG
*
1434682 G--C---A----TAAGCCCAA
130 GCACATTATCTTTAAGACCAA
* * * *
1434694 TGTCGCTGGCCTTGAATCA--ACA----CA---T-T-AGC-ATAAGCCCAATGTCA-CTGGCCTT
1 TATCGCTGGCCTTGAATCAGCACATTGGCACCTTCTCATCTCTAAGACCAATGT-AGCTGGCCTT
* *
1434746 GAATCAGCACATCGGCACCTCAACCATCTTTAAGTCGAATGTCGCTGGCCTTGAATCAGCACATT
65 GAATCAGCACATCGGCA-CTCAACCATCTTTAAGTCAAATATCGCTGGCCTTGAATCAGCACATT
* *
1434811 GGCACCTTCATCTTTAAGTCCAA
129 GGCACATT-ATCTTTAAGACCAA
* * * *
1434834 TATCGCTGGCCTTGAATCATCACATTGGCGCCTTCGTTATCTCTAAGACCAATGTCGCTGGCCTT
1 TATCGCTGGCCTTGAATCAGCACATTGGCACCTTC-TCATCTCTAAGACCAATGTAGCTGGCCTT
* ** * * *
1434899 GAATCAGCACATTGGCA-TC-TTCATCTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTG
65 GAATCAGCACATCGGCACTCAACCATCTTTAAGTCAAATATCGCTGGCCTTGAATCAGCACATTG
*
1434962 GCACATTGTCTTTAAGACCAA
130 GCACATTATCTTTAAGACCAA
* * * * * * * *
1434983 TGTCGCGGGCCTTGAATCAGCACATTGGCA-CTT-TCATCTTTAAGTCCAATATCGTTGGCTTTG
1 TATCGCTGGCCTTGAATCAGCACATTGGCACCTTCTCATCTCTAAGACCAATGTAGCTGGCCTTG
* * * * * * * * * * **
1435046 CATCAGCATATTGGCATCTTTAA-CAT-TCCTAAGCCCAATCTCGCTAGCTTTGTCTCAGCACAT
66 AATCAGCACATCGGCA-C-TCAACCATCT-TTAAGTCAAATATCGCTGGCCTTGAATCAGCACAT
* * * *
1435109 TGG--CATTCTTCTTCAAGTCTAA
128 TGGCACATT-ATCTTTAAGACCAA
* * * * * *
1435131 TGTCACTGGCCATGAATCAGCACATT-G-------TCA----TAAG-CCTAATATCGTTGGCCTT
1 TATCGCTGGCCTTGAATCAGCACATTGGCACCTTCTCATCTCTAAGACC-AATGTAGCTGGCCTT
* * * * * * * * *
1435183 GAATCAGCATATTGGCACT---TCGTCTCTAAGACTAATGTCGCTGGCCTTGAATCAGCACATAG
65 GAATCAGCACATCGGCACTCAACCATCTTTAAGTCAAATATCGCTGGCCTTGAATCAGCACATTG
*
1435245 G--C---A----TAAGCCCAA
130 GCACATTATCTTTAAGACCAA
* * * ** * * * *
1435257 TGTTGCTGGCCTTGAATTAGCACATCAGCACC-TCAACCATCTTTAAGTCCAATGTCGCTGGCCT
1 TATCGCTGGCCTTGAATCAGCACATTGGCACCTTC--TCATCTCTAAGACCAATGTAGCTGGCCT
* ** * *
1435321 TGAATCAGCACATTGGCAC-C-TTCATCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCACATT
64 TGAATCAGCACATCGGCACTCAACCATCTTTAAGTCAAATATCGCTGGCCTTGAATCAGCACATT
* *
1435384 GGCACCTTCGTCATCTCTAAGACCAA
129 GGCA-CAT--T-ATCTTTAAGACCAA
* * * * * * *
1435410 TGTCGCTGGCCTTGAATCAGCACATTGGCATC-T-TCATCTTTAAGTCCAATATCGTTGGCCTTG
1 TATCGCTGGCCTTGAATCAGCACATTGGCACCTTCTCATCTCTAAGACCAATGTAGCTGGCCTTG
* * *** * * * * *
1435473 AATCAGCATATTGGCA--C-ATTGTCTTTAAGACCAATGTCGCGGGCCTTGAATCAGCATATTGG
66 AATCAGCACATCGGCACTCAACCATCTTTAAGTCAAATATCGCTGGCCTTGAATCAGCACATTGG
* *
1435535 CACTTTCATCTTTAAGTCCAA
131 CACATT-ATCTTTAAGACCAA
* * * * * * *
1435556 TATCGTTGG-CTCT-ACATCAGCATATTGGCATCTT-TAACAT-TCCTAAGCCCAATATCGCAGG
1 TATCGCTGGCCT-TGA-ATCAGCACATTGGCACCTTCT--CATCT-CTAAGACCAATGTAGCTGG
* * * * * * * *
1435617 CCTTGAATCAGCATATTGGCACT---TCATCTCTAAGACCAATGTCACTGGCCTTGAATCAGCAC
61 CCTTGAATCAGCACATCGGCACTCAACCATCTTTAAGTCAAATATCGCTGGCCTTGAATCAGCAC
1435679 ATTGG--C---A----TAAG-CCAAA
126 ATTGGCACATTATCTTTAAGACC-AA
* * * * ** * *
1435695 TATCACTGGCCTTAAAGCAGCATATTGGCA--TT-TTGTCTCTAAGACCAATATCA-ATGGCCTT
1 TATCGCTGGCCTTGAATCAGCACATTGGCACCTTCTCATCTCTAAGACCAATGT-AGCTGGCCTT
* * * * *
1435756 GAATCAGCATATTGGCA-T-AAGCC--C---AA-T---GT-T-GCTGGCCTTGAATTAGCACATC
65 GAATCAGCACATCGGCACTCAA-CCATCTTTAAGTCAAATATCGCTGGCCTTGAATCAGCACATT
* ** *
1435808 AGCACCTCAACCATCTTTAAGTCCAA
129 GGCA---C-ATTATCTTTAAGACCAA
* * * *
1435834 TGTCGCTGGCCTTGAATCAGCACATTGGCACC-T-TCATCTTTAAGTCCAATGTCGCTGGCCTTG
1 TATCGCTGGCCTTGAATCAGCACATTGGCACCTTCTCATCTCTAAGACCAATGTAGCTGGCCTTG
* ** * * * * *
1435897 AATCAGCACATTGGCAC-C-TTCGTCTTTAAGTCCAATATTGTTGGCCTTGAATCAGCATATTGG
66 AATCAGCACATCGGCACTCAACCATCTTTAAGTCAAATATCGCTGGCCTTGAATCAGCACATTGG
* *
1435960 CAC-TTCGTCTCTAAGACCAA
131 CACATT-ATCTTTAAGACCAA
* * * *
1435980 TGTCGCTGGCCTTGAATCAGCACATAGG--------CA----TAAGCCCAATGTCA-TTGGCCTT
1 TATCGCTGGCCTTGAATCAGCACATTGGCACCTTCTCATCTCTAAGACCAATGT-AGCTGGCCTT
* * * *
1436032 GAATCAACATATTGGCA--CAAGCC--C----AG-----TATCGCTGGCCTTGAATCAGCATATT
65 GAATCAGCACATCGGCACTCAA-CCATCTTTAAGTCAAATATCGCTGGCCTTGAATCAGCACATT
* * *
1436084 GACACCTTCATCTTTAAAACCAA
129 GGCACATT-ATCTTTAAGACCAA
* * * * * * * *** *
1436107 TGTCGCTGGCCTTGAATCAGTATATCGGCACC-TCAACCATTTTTAAGTTAAATGTCGCTGGCCT
1 TATCGCTGGCCTTGAATCAGCACATTGGCACCTTC--TCATCTCTAAGACCAATGTAGCTGGCCT
* * ** * * * *
1436171 TGAATCAGTACATTGGCAC-C-TTCATTTTTAAGTCCAATATCGCTGGCCGTGAATCAGCACTTT
64 TGAATCAGCACATCGGCACTCAACCATCTTTAAGTCAAATATCGCTGGCCTTGAATCAGCACATT
* * * *
1436234 GGCGCCTTCGTCATCTCTACGACCAA
129 GGC-ACAT--T-ATCTTTAAGACCAA
* * * * * * *
1436260 TGTTAG-TGGCCTTGAATCAGCACATTGGCA--TAT-TCATCTTTAAGTCTAATATCGCTGGCCT
1 T-ATCGCTGGCCTTGAATCAGCACATTGGCACCT-TCTCATCTCTAAGACCAATGTAGCTGGCCT
* * *** * * * *
1436321 TGAATCAGCATATTGGCA---AATTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGTACATT
64 TGAATCAGCACATCGGCACTCAACCATCTTTAAGTCAAATATCGCTGGCCTTGAATCAGCACATT
* *
1436383 GGCACCTTTATCTTTAAGTCCAA
129 GGCA-CATTATCTTTAAGACCAA
** * * * **
1436406 TATCATTGGCCTTGCATCAGCATATTGGCATCATTAACAT-TCCTAAG-CCTAATGTCA-CTGGC
1 TATCGCTGGCCTTGAATCAGCACATTGGCA-CCTTCTCATCT-CTAAGACC-AATGT-AGCTGGC
* * * *** * * * * * * *
1436468 CTT-ATCTCAGCATATTGGCA-T---TTTTCTTCAAGTCTAATGTCACCGGCCATGAATTAGCAC
62 CTTGA-ATCAGCACATCGGCACTCAACCATCTTTAAGTCAAATATCGCTGGCCTTGAATCAGCAC
* *
1436528 ATTGG-----GA----TAAGCCCAA
126 ATTGGCACATTATCTTTAAGACCAA
* * * *
1436544 TATCGCTGGCCTTGAATCAGCATATTGGCA--GT-TCGTCTCTAAGACCAATGTCGCTGGCCTTG
1 TATCGCTGGCCTTGAATCAGCACATTGGCACCTTCTCATCTCTAAGACCAATGTAGCTGGCCTTG
* *
1436606 AATCAGCACATTGGCA-T-AAGCC--C---AA-T---GT-T-GCTGGCCTTGAAT---CA-A---
66 AATCAGCACATCGGCACTCAA-CCATCTTTAAGTCAAATATCGCTGGCCTTGAATCAGCACATTG
* * *
1436651 -CACATTAGC-ATAAGCCCAA
130 GCACATTATCTTTAAGACCAA
* * * * * * * *
1436670 TGTCGCAT-GCCTTAAATCAGCACATCGGCA-CTTCAACCATCTTTAAGTCGAATGTCGCTGGCC
1 TATCGC-TGGCCTTGAATCAGCACATTGGCACCTTC--TCATCTCTAAGACCAATGTAGCTGGCC
* ** *
1436733 TTGAATCAGCACATTGGCAC-C-TTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
63 TTGAATCAGCACATCGGCACTCAACCATCTTTAAGTCAAATATCGCTGGCCTTGAATCAGCACAT
* * *
1436796 TGGCGCCTTCGTTATCTCTAAGACCAA
128 T-G-G-C-ACATTATCTTTAAGACCAA
* * * * * * *
1436823 TGTCGCTGGCCTTGAATCAGCACATTGGCATC-T-TCATCTTTAAGTCCAATATCGCTAGCCTTG
1 TATCGCTGGCCTTGAATCAGCACATTGGCACCTTCTCATCTCTAAGACCAATGTAGCTGGCCTTG
* * * ** * * * *
1436886 AATTAGCATATTGGCA--C-ATTATCTTTAAGACCAATGTCGCGGGCCTTGAATCAGCACATTGG
66 AATCAGCACATCGGCACTCAACCATCTTTAAGTCAAATATCGCTGGCCTTGAATCAGCACATTGG
* *
1436948 CACTTTCATCTTTAAGTCCAA
131 CACATT-ATCTTTAAGACCAA
* * * * * * * *
1436969 TATCGTTGGCTTTGCATCAGCATATTGGCATCTT-TAACAT-TCCTAAGCCCAATGTCGCTGGCT
1 TATCGCTGGCCTTGAATCAGCACATTGGCACCTTCT--CATCT-CTAAGACCAATGTAGCTGGCC
** * * * * * * * * *
1437032 TTGTCTCAGCACATTGGCA-T---TCTTCTTCAAGTCTAATGTCACTAGCCATGAATCAGCACAT
63 TTGAATCAGCACATCGGCACTCAACCATCTTTAAGTCAAATATCGCTGGCCTTGAATCAGCACAT
* *
1437093 T-G-------TC-ATAAGCCCAA
128 TGGCACATTATCTTTAAGACCAA
* * * * *
1437107 TATCGTTGGCCTTGAATGAGCATATTGGCA-C-T-TCGTCTCTAAGACCAATGTTGCTGGCCTTG
1 TATCGCTGGCCTTGAATCAGCACATTGGCACCTTCTCATCTCTAAGACCAATGTAGCTGGCCTTG
* * *
1437169 AATCAGTACATAGGCA-T-AAGCC--C---AA-T---GT-T-GCTGGCCTTGAATCAGCACATTG
66 AATCAGCACATCGGCACTCAA-CCATCTTTAAGTCAAATATCGCTGGCCTTGAATCAGCACATTG
*
1437221 G--C---A-C---AAGCCCAA
130 GCACATTATCTTTAAGACCAA
* * * *
1437233 TATCGCTGGTCTTGAATCAGCATATTGGCACC-T-TCATCTTTAAGACCAATGTCGCTGGCCTTG
1 TATCGCTGGCCTTGAATCAGCACATTGGCACCTTCTCATCTCTAAGACCAATGTAGCTGGCCTTG
* * * * * * * *
1437296 AATCAACATATTGGCACCTTAACCATTTTTAAGTCCAATATCGTTGGCCTTGAATCAGCACATTA
66 AATCAGCACATCGGCA-CTCAACCATCTTTAAGTCAAATATCGCTGGCCTTGAATCAGCACATTG
* *
1437361 GCACCTTCATCTTTAAGTCCAA
130 GCACATT-ATCTTTAAGACCAA
* * * * *
1437383 TATCGCTGGCCTTGAATTAGCACATTGGCGCCTTCGTCATCTCTAAGACCAATGTCGCTAGCCTG
1 TATCGCTGGCCTTGAATCAGCACATTGGCACCTTC-TCATCTCTAAGACCAATGTAGCTGGCCTT
* * * *** * * *
1437448 GAATCAACACATTGG--CTTATTAATCTTTAAGTCCAATATCGCTGGCCTTGAATTAGCATATTG
65 GAATCAGCACATCGGCACTCAACCATCTTTAAGTCAAATATCGCTGGCCTTGAATCAGCACATTG
* * *
1437511 GCACATTGTCTTTAAGACTAG
130 GCACATTATCTTTAAGACCAA
* * * * * * * *
1437532 TGTCACTGGCCTTGAATCAGCACGTTGGCACC-T-TCATCTTTAAGTCCAATATCGTTGGCCTTG
1 TATCGCTGGCCTTGAATCAGCACATTGGCACCTTCTCATCTCTAAGACCAATGTAGCTGGCCTTG
* * * * * * * * ** *
1437595 CATCAGCATATTGGCATCTTTAA-CAT-TCCTAAGCCCAATGTCGCTGGCCTTGTCTTAGCACAT
66 AATCAGCACATCGGCA-C-TCAACCATCT-TTAAGTCAAATATCGCTGGCCTTGAATCAGCACAT
* * *
1437658 TGG--CATTATTCTTCAAGTCTAA
128 TGGCACATTA-TCTTTAAGACCAA
* * *
1437680 TGTCACTGGCCATGAATCAGCACATTGGCA
1 TATCGCTGGCCTTGAATCAGCACATTGGCA
1437710 TAAACCCAAT
Statistics
Matches: 2691, Mismatches: 466, Indels: 566
0.72 0.13 0.15
Matches are distributed among these distances:
122 1 0.00
123 4 0.00
124 3 0.00
126 227 0.08
127 87 0.03
128 4 0.00
129 4 0.00
130 82 0.03
131 6 0.00
132 7 0.00
134 141 0.05
135 55 0.02
136 40 0.01
137 11 0.00
138 144 0.05
139 100 0.04
140 175 0.07
141 2 0.00
142 9 0.00
143 4 0.00
144 3 0.00
145 13 0.00
146 261 0.10
147 22 0.01
148 192 0.07
149 481 0.18
150 371 0.14
151 9 0.00
152 8 0.00
153 220 0.08
154 5 0.00
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (150 bp):
TATCGCTGGCCTTGAATCAGCACATTGGCACCTTCTCATCTCTAAGACCAATGTAGCTGGCCTTG
AATCAGCACATCGGCACTCAACCATCTTTAAGTCAAATATCGCTGGCCTTGAATCAGCACATTGG
CACATTATCTTTAAGACCAA
Found at i:1434705 original size:39 final size:39
Alignment explanation
Indices: 1434646--1434762 Score: 189
Period size: 39 Copynumber: 3.0 Consensus size: 39
1434636 AGCTCGTCTC
*
1434646 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
1 TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
* *
1434685 TAAGCCCAATGTCGCTGGCCTTGAATCAACACATTAGCA
1 TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
* *
1434724 TAAGCCCAATGTCACTGGCCTTGAATCAGCACATCGGCA
1 TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
1434763 CCTCAACCAT
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 71 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (39 bp):
TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
Found at i:1435292 original size:524 final size:524
Alignment explanation
Indices: 1434685--1436001 Score: 2099
Period size: 524 Copynumber: 2.5 Consensus size: 524
1434675 CACATTGGCA
* * **
1434685 TAAGCCCAATGTCGCTGGCCTTGAATCAACACATTA-GCATAAGCCCAATGTCACTGGCCTTGAA
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACA-TAGGCATAAGCCCAATGTTGCTGGCCTTGAA
* * *
1434749 TCAGCACATCGGCACCTCAACCATCTTTAAGTCGAATGTCGCTGGCCTTGAATCAGCACATTGGC
65 TTAGCACATCAGCACCTCAACCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGC
* *
1434814 ACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCATCACATTGGCGCCTTCGTTATCTCTA
130 ACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCG-TATCTCTA
*
1434879 AGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTTTAAGTCCAATATCGCTAG
194 AGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTTTAAGTCCAATATCGCTGG
1434944 CCTTGAATCAGCATATTGGCACATTGTCTTTAAGACCAATGTCGCGGGCCTTGAATCAGCACATT
259 CCTTGAATCAGCATATTGGCACATTGTCTTTAAGACCAATGTCGCGGGCCTTGAATCAGCACATT
* *
1435009 GGCACTTTCATCTTTAAGTCCAATATCGTTGGCTTTGCATCAGCATATTGGCATCTTTAACATTC
324 GGCACTTTCATCTTTAAGTCCAATATCGTTGGCTCTACATCAGCATATTGGCATCTTTAACATTC
* * ** * * *
1435074 CTAAGCCCAATCTCGCTA-GCTTTGTCTCAGCACATTGGCA-TTCTTCT-TCAAGTCTAATGTCA
389 CTAAGCCCAATATCGC-AGGCCTTGAATCAGCACATTGGCACTTCATCTCT-AAGACCAATGTCA
* * ** * *
1435136 CTGGCCATGAATCAGCACATTGTCATAAGCCTAATATCGTTGGCCTTGAATCAGCATATTGGCAC
452 CTGGCCATGAATCAGCACATTGGCATAAGCCAAATATCACTGGCCTTAAAGCAGCATATTGGCAC
1435201 TTCGTCTC
517 TTCGTCTC
*
1435209 TAAGACTAATGTCGCTGGCCTTGAATCAGCACATAGGCATAAGCCCAATGTTGCTGGCCTTGAAT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATAGGCATAAGCCCAATGTTGCTGGCCTTGAAT
1435274 TAGCACATCAGCACCTCAACCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
66 TAGCACATCAGCACCTCAACCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
*
1435339 CCTTCATCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCACATTGGCACCTTCGTCATCTCTAA
131 CCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCGT-ATCTCTAA
*
1435404 GACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTTTAAGTCCAATATCGTTGGC
195 GACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTTTAAGTCCAATATCGCTGGC
*
1435469 CTTGAATCAGCATATTGGCACATTGTCTTTAAGACCAATGTCGCGGGCCTTGAATCAGCATATTG
260 CTTGAATCAGCATATTGGCACATTGTCTTTAAGACCAATGTCGCGGGCCTTGAATCAGCACATTG
1435534 GCACTTTCATCTTTAAGTCCAATATCGTTGGCTCTACATCAGCATATTGGCATCTTTAACATTCC
325 GCACTTTCATCTTTAAGTCCAATATCGTTGGCTCTACATCAGCATATTGGCATCTTTAACATTCC
*
1435599 TAAGCCCAATATCGCAGGCCTTGAATCAGCATATTGGCACTTCATCTCTAAGACCAATGTCACTG
390 TAAGCCCAATATCGCAGGCCTTGAATCAGCACATTGGCACTTCATCTCTAAGACCAATGTCACTG
* * *
1435664 GCCTTGAATCAGCACATTGGCATAAGCCAAATATCACTGGCCTTAAAGCAGCATATTGGCATTTT
455 GCCATGAATCAGCACATTGGCATAAGCCAAATATCACTGGCCTTAAAGCAGCATATTGGCACTTC
1435729 GTCTC
520 GTCTC
* ** * *
1435734 TAAGACCAATATCAATGGCCTTGAATCAGCATATTGGCATAAGCCCAATGTTGCTGGCCTTGAAT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATAGGCATAAGCCCAATGTTGCTGGCCTTGAAT
1435799 TAGCACATCAGCACCTCAACCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
66 TAGCACATCAGCACCTCAACCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
* *
1435864 CCTTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCG--TCTTTAAG
131 CCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCGTATCTCTAAG
* * * * * * * * *
1435927 TCCAATATTGTTGGCCTTGAATCAGCATATTGGCA-CTTCGTCTCTAAGACCAATGTCGCTGGCC
196 ACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTTTAAGTCCAATATCGCTGGCC
1435991 TTGAATCAGCA
261 TTGAATCAGCA
1436002 CATAGGCATA
Statistics
Matches: 736, Mismatches: 52, Indels: 13
0.92 0.06 0.02
Matches are distributed among these distances:
521 35 0.05
522 37 0.05
523 4 0.01
524 401 0.54
525 258 0.35
526 1 0.00
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.30
Consensus pattern (524 bp):
TAAGACCAATGTCGCTGGCCTTGAATCAGCACATAGGCATAAGCCCAATGTTGCTGGCCTTGAAT
TAGCACATCAGCACCTCAACCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
CCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCGTATCTCTAAG
ACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTTTAAGTCCAATATCGCTGGCC
TTGAATCAGCATATTGGCACATTGTCTTTAAGACCAATGTCGCGGGCCTTGAATCAGCACATTGG
CACTTTCATCTTTAAGTCCAATATCGTTGGCTCTACATCAGCATATTGGCATCTTTAACATTCCT
AAGCCCAATATCGCAGGCCTTGAATCAGCACATTGGCACTTCATCTCTAAGACCAATGTCACTGG
CCATGAATCAGCACATTGGCATAAGCCAAATATCACTGGCCTTAAAGCAGCATATTGGCACTTCG
TCTC
Found at i:1435791 original size:87 final size:87
Alignment explanation
Indices: 1435599--1435794 Score: 275
Period size: 87 Copynumber: 2.3 Consensus size: 87
1435589 TTAACATTCC
* * * * *
1435599 TAAGCCCAATATCGCAGGCCTTGAATCAGCATATTGGCACTTCATCTCTAAGACCAATGTCACTG
1 TAAGCCCAATATCGCTGGCCTTAAAGCAGCATATTGGCACTTCATCTCTAAGACCAATATCAATG
1435664 GCCTTGAATCAGCACATTGGCA
66 GCCTTGAATCAGCACATTGGCA
* * * **
1435686 TAAGCCAAATATCACTGGCCTTAAAGCAGCATATTGGCATTTTGTCTCTAAGACCAATATCAATG
1 TAAGCCCAATATCGCTGGCCTTAAAGCAGCATATTGGCACTTCATCTCTAAGACCAATATCAATG
*
1435751 GCCTTGAATCAGCATATTGGCA
66 GCCTTGAATCAGCACATTGGCA
* *
1435773 TAAGCCCAATGTTGCTGGCCTT
1 TAAGCCCAATATCGCTGGCCTT
1435795 GAATTAGCAC
Statistics
Matches: 94, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
87 94 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (87 bp):
TAAGCCCAATATCGCTGGCCTTAAAGCAGCATATTGGCACTTCATCTCTAAGACCAATATCAATG
GCCTTGAATCAGCACATTGGCA
Found at i:1436082 original size:39 final size:39
Alignment explanation
Indices: 1435976--1436084 Score: 137
Period size: 39 Copynumber: 2.8 Consensus size: 39
1435966 GTCTCTAAGA
* * * *
1435976 CCAATGTCGCTGGCCTTGAATCAGCACATAGGCATAAGC
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACAAGC
* ** *
1436015 CCAATGTCATTGGCCTTGAATCAACATATTGGCACAAGC
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACAAGC
*
1436054 CCAGTATCGCTGGCCTTGAATCAGCATATTG
1 CCAATATCGCTGGCCTTGAATCAGCATATTG
1436085 ACACCTTCAT
Statistics
Matches: 59, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
39 59 1.00
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
CCAATATCGCTGGCCTTGAATCAGCATATTGGCACAAGC
Found at i:1436571 original size:39 final size:39
Alignment explanation
Indices: 1436503--1436699 Score: 180
Period size: 39 Copynumber: 4.8 Consensus size: 39
1436493 CTTCAAGTCT
* * * * *
1436503 AATGTCACCGGCCATGAATTAGCACATTGGGATAAGCCC
1 AATGTCGCTGGCCTTGAATCAGCACATTGGCATAAGCCC
* * *
1436542 AATATCGCTGGCCTTGAATCAGCATATTGGCAGTTCGTCTCTAAGACC
1 AATGTCGCTGGCCTTGAATCAGCACATTGGCA---------TAAGCCC
1436590 AATGTCGCTGGCCTTGAATCAGCACATTGGCATAAGCCC
1 AATGTCGCTGGCCTTGAATCAGCACATTGGCATAAGCCC
* * *
1436629 AATGTTGCTGGCCTTGAATCAACACATTAGCATAAGCCC
1 AATGTCGCTGGCCTTGAATCAGCACATTGGCATAAGCCC
* *
1436668 AATGTCGCAT-GCCTTAAATCAGCACATCGGCA
1 AATGTCGC-TGGCCTTGAATCAGCACATTGGCA
1436700 CTTCAACCAT
Statistics
Matches: 129, Mismatches: 19, Indels: 20
0.77 0.11 0.12
Matches are distributed among these distances:
39 92 0.71
40 1 0.01
48 36 0.28
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.24
Consensus pattern (39 bp):
AATGTCGCTGGCCTTGAATCAGCACATTGGCATAAGCCC
Found at i:1436790 original size:563 final size:563
Alignment explanation
Indices: 1436103--1437514 Score: 1973
Period size: 563 Copynumber: 2.5 Consensus size: 563
1436093 ATCTTTAAAA
* * * *
1436103 CCAATGTCGCTGGCCTTGAATCAGTATATCGGCACCTCAACCATTTTTAAGTTAAATGTCGCTGG
1 CCAATGTCGCTGGCCTTGAATCAGCATATCGGCACTTCAACCATCTTTAAGTCAAATGTCGCTGG
* * *
1436168 CCTTGAATCAGTACATTGGCACCTTCATTTTTAAGTCCAATATCGCTGGCCGTGAATCAGCACTT
66 CCTTGAATCAGCACATTGGCACCTTCATTTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
*
1436233 TGGCGCCTTCGTCATCTCTACGACCAATGTTAG-TGGCCTTGAATCAGCACATTGGCATATTCAT
131 TGGCGCCTTCGTCATCTCTAAGACCAATG-TAGCTGGCCTTGAATCAGCACATTGGCATATTCAT
* * *
1436297 CTTTAAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCAAATTGTCTTTAAGACCAATGTCG
195 CTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCAAATTATCTTTAAGACCAATGTCG
* *
1436362 CTGGCCTTGAATCAGTACATTGGCACCTTT-ATCTTTAAGTCCAATATCATTGGCCTTGCATCAG
260 CGGGCCTTGAATCAGCACATTGGCA-CTTTCATCTTTAAGTCCAATATCATTGGCCTTGCATCAG
* * *
1436426 CATATTGGCATCATTAACATTCCTAAGCCTAATGTCACTGGCCTTATCTCAGCATATTGGCATTT
324 CATATTGGCATCATTAACATTCCTAAGCCCAATGTCACTGGCCTTATCTCAGCACATTGGCATTC
* * *
1436491 TTCTTCAAGTCTAATGTCACCGGCCATGAATTAGCACATTGGGATAAGCCCAATATCGCTGGCCT
389 TTCTTCAAGTCTAATGTCACCAGCCATGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCT
* *
1436556 TGAATCAGCATATTGGCAGTTCGTCTCTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGC
454 TGAATCAGCATATTGGCACTTCGTCTCTAAGACCAATGTCGCTGGCCTTGAATCAGCACATAGGC
*
1436621 ATAAGCCCAATGTTGCTGGCCTTGAATCAACACATTAGCATAAGC
519 ATAAGCCCAATGTTGCTGGCCTTGAATCAACACATTAGCACAAGC
* * *
1436666 CCAATGTCGCAT-GCCTTAAATCAGCACATCGGCACTTCAACCATCTTTAAGTCGAATGTCGCTG
1 CCAATGTCGC-TGGCCTTGAATCAGCATATCGGCACTTCAACCATCTTTAAGTCAAATGTCGCTG
*
1436730 GCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACA
65 GCCTTGAATCAGCACATTGGCACCTTCATTTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACA
* * *
1436795 TTGGCGCCTTCGTTATCTCTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATCTTCAT
130 TTGGCGCCTTCGTCATCTCTAAGACCAATGTAGCTGGCCTTGAATCAGCACATTGGCATATTCAT
* *
1436860 CTTTAAGTCCAATATCGCTAGCCTTGAATTAGCATATTGGCACATTATCTTTAAGACCAATGTCG
195 CTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCAAATTATCTTTAAGACCAATGTCG
* *
1436925 CGGGCCTTGAATCAGCACATTGGCACTTTCATCTTTAAGTCCAATATCGTTGGCTTTGCATCAGC
260 CGGGCCTTGAATCAGCACATTGGCACTTTCATCTTTAAGTCCAATATCATTGGCCTTGCATCAGC
* * * *
1436990 ATATTGGCATCTTTAACATTCCTAAGCCCAATGTCGCTGGCTTTGTCTCAGCACATTGGCATTCT
325 ATATTGGCATCATTAACATTCCTAAGCCCAATGTCACTGGCCTTATCTCAGCACATTGGCATTCT
* * *
1437055 TCTTCAAGTCTAATGTCACTAGCCATGAATCAGCACATTGTCATAAGCCCAATATCGTTGGCCTT
390 TCTTCAAGTCTAATGTCACCAGCCATGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCTT
* * *
1437120 GAATGAGCATATTGGCACTTCGTCTCTAAGACCAATGTTGCTGGCCTTGAATCAGTACATAGGCA
455 GAATCAGCATATTGGCACTTCGTCTCTAAGACCAATGTCGCTGGCCTTGAATCAGCACATAGGCA
* *
1437185 TAAGCCCAATGTTGCTGGCCTTGAATCAGCACATTGGCACAAGC
520 TAAGCCCAATGTTGCTGGCCTTGAATCAACACATTAGCACAAGC
* * * * *
1437229 CCAATATCGCTGGTCTTGAATCAGCATATTGGCACCTT----CATCTTTAAGACCAATGTCGCTG
1 CCAATGTCGCTGGCCTTGAATCAGCATATCGGCA-CTTCAACCATCTTTAAGTCAAATGTCGCTG
* * *
1437290 GCCTTGAATCAACATATTGGCACCTTAACCATTTTTAAGTCCAATATCGTTGGCCTTGAATCAGC
65 GCCTTGAATCAGCACATTGGCACCTT---CATTTTTAAGTCCAATATCGCTGGCCTTGAATCAGC
* * * * * * * *
1437355 ACATTAGCACC-T--TCATCTTTAAGTCCAATATCGCTGGCCTTGAATTAGCACATTGGCGCCT-
127 ACATTGGCGCCTTCGTCATCTCTAAGACCAATGTAGCTGGCCTTGAATCAGCACATT-G-GCATA
* * * * * * ** *
1437416 TCGTCATCTCTAAGACCAATGTCGCTAGCCTGGAATCAACACATTGGCTTATTAATCTTTAAGTC
190 T--TCATCTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCAAATT-ATCTTTAAGAC
* * * *
1437481 CAATATCGCTGGCCTTGAATTAGCATATTGGCAC
252 CAATGTCGCGGGCCTTGAATCAGCACATTGGCAC
1437515 ATTGTCTTTA
Statistics
Matches: 758, Mismatches: 78, Indels: 25
0.88 0.09 0.03
Matches are distributed among these distances:
560 82 0.11
561 2 0.00
562 11 0.01
563 619 0.82
564 44 0.06
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (563 bp):
CCAATGTCGCTGGCCTTGAATCAGCATATCGGCACTTCAACCATCTTTAAGTCAAATGTCGCTGG
CCTTGAATCAGCACATTGGCACCTTCATTTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
TGGCGCCTTCGTCATCTCTAAGACCAATGTAGCTGGCCTTGAATCAGCACATTGGCATATTCATC
TTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCAAATTATCTTTAAGACCAATGTCGC
GGGCCTTGAATCAGCACATTGGCACTTTCATCTTTAAGTCCAATATCATTGGCCTTGCATCAGCA
TATTGGCATCATTAACATTCCTAAGCCCAATGTCACTGGCCTTATCTCAGCACATTGGCATTCTT
CTTCAAGTCTAATGTCACCAGCCATGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCTTG
AATCAGCATATTGGCACTTCGTCTCTAAGACCAATGTCGCTGGCCTTGAATCAGCACATAGGCAT
AAGCCCAATGTTGCTGGCCTTGAATCAACACATTAGCACAAGC
Done.