Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2671
Parameters: 2 7 7 80 10 50 1000
Length:  41795

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
382--422
16
2.6
16
84
0
55
65
0
2
31
1.05
1168--1210
10
4.4
10
80
16
54
86
2
11
0
0.67
1162--1210
19
2.7
18
93
3
80
85
2
12
0
0.68
1162--1201
8
4.6
8
82
17
53
87
2
10
0
0.63
1293--1334
14
2.9
15
79
13
52
33
0
0
66
0.92
2494--2533
4
10.8
4
84
10
50
77
0
22
0
0.77
2492--2545
9
5.8
9
76
8
54
79
0
20
0
0.73
2581--2645
24
2.5
25
80
9
69
36
3
0
60
1.13
4512--4556
11
4.2
11
83
13
58
60
0
0
40
0.97
4492--4556
21
3.0
21
82
10
78
58
0
0
41
0.98
4796--4826
16
1.9
16
93
0
53
67
0
0
32
0.91
5005--5060
3
18.3
3
92
3
94
66
0
0
33
0.92
5200--5243
2
22.5
2
81
4
54
47
0
2
50
1.13
5174--5255
29
2.8
28
81
5
92
46
0
2
51
1.14
5827--5887
24
2.5
25
78
7
72
40
0
0
59
0.98
10247--10373
60
2.1
60
92
0
209
32
8
11
48
1.69
11859--11900
2
21.5
2
82
4
50
40
0
4
54
1.21
11864--11900
10
3.7
10
92
0
56
40
0
5
54
1.24
12451--12495
15
3.0
14
81
15
54
62
0
2
35
1.08
12458--12495
15
2.5
15
91
4
58
65
0
0
34
0.93
15040--15085
19
2.3
20
82
14
60
39
0
2
58
1.10
16468--16556
25
3.6
25
74
10
69
42
1
0
56
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16470--16550
15
5.9
14
80
13
89
39
1
0
59
1.05
16431--16517
13
6.8
13
69
7
63
45
2
0
51
1.13
18140--18218
9
8.6
10
71
18
64
64
0
0
35
0.94
18140--18221
18
4.1
19
75
23
78
63
0
0
36
0.95
18136--18224
44
2.0
43
97
2
169
64
0
0
35
0.94
18152--18234
18
4.7
18
76
18
77
62
0
0
37
0.95
18416--18469
27
2.0
28
85
10
76
29
1
0
68
1.00
18416--18483
10
6.9
10
72
24
56
30
1
0
67
0.99
18441--18498
22
2.6
22
86
5
73
36
0
0
63
0.94
19912--20010
33
3.0
33
84
10
107
56
1
1
41
1.13
20398--20440
22
2.0
22
85
0
59
11
9
6
72
1.29
20420--20456
17
2.2
17
90
0
56
13
10
5
70
1.32
20694--20739
2
23.0
2
100
0
92
50
0
0
50
1.00
21041--21108
9
8.1
9
71
15
56
39
1
0
58
1.07
21043--21103
16
3.5
16
72
14
50
39
1
0
59
1.08
23078--23147
13
5.2
13
71
19
63
35
1
0
62
1.04
23079--23127
24
2.0
24
96
0
89
34
2
0
63
1.06
23312--23359
21
2.3
20
85
3
60
45
4
8
41
1.53
23634--23683
18
2.8
18
74
20
52
36
2
0
62
1.07
23621--23730
55
2.0
54
81
13
129
41
0
0
57
1.05
23727--23779
17
2.9
17
75
20
54
56
0
0
43
0.99
24770--24817
3
16.0
3
77
0
51
29
35
0
35
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27760--27803
21
2.0
22
86
4
63
50
6
0
43
1.29
33375--33427
24
2.2
24
83
3
63
41
0
0
58
0.98
36461--36495
18
1.9
18
88
0
52
22
8
54
14
1.67
37258--37299
21
2.0
21
100
0
84
28
19
14
38
1.90
40964--41154
65
2.9
63
86
5
265
37
17
12
32
1.87

Tables:   1

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