Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2672
Parameters: 2 7 7 80 10 50 1000
Length:  86202

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1616--1663
21
2.5
20
87
12
73
33
12
27
27
1.92
2554--2624
20
3.5
20
82
0
88
43
14
9
32
1.78
3108--3133
10
2.6
10
100
0
52
7
0
7
84
0.77
5861--6011
80
1.9
79
82
6
189
29
27
9
33
1.89
5861--6032
80
2.2
79
79
7
179
29
27
11
31
1.91
7434--7479
17
2.7
17
86
6
58
54
6
0
39
1.26
17055--17242
97
1.9
97
89
2
288
35
12
20
31
1.89
19610--19639
2
15.0
2
100
0
60
50
0
0
50
1.00
25277--25324
17
2.8
16
84
12
60
25
0
2
72
0.95
25520--25596
22
3.5
22
81
1
91
57
23
14
5
1.57
25651--25699
23
2.1
23
92
0
80
61
22
14
2
1.43
27571--28034
156
3.0
154
75
9
408
27
16
17
38
1.91
31621--31682
17
3.7
16
74
18
54
77
1
14
6
1.04
33346--33537
35
5.5
34
71
13
115
30
9
18
41
1.82
33370--33546
69
2.6
69
79
12
195
32
10
19
37
1.85
33370--33604
35
6.8
34
74
10
156
31
9
20
37
1.85
33483--33637
35
4.4
35
75
13
104
32
9
18
40
1.82
33811--33857
6
8.3
6
81
9
55
31
2
2
63
1.18
33859--33888
15
2.0
15
100
0
60
86
0
6
6
0.70
42434--42458
13
1.9
13
100
0
50
32
16
16
36
1.90
42511--42560
20
2.5
20
87
3
66
42
16
14
28
1.86
44153--44191
2
19.5
2
100
0
78
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47481--47538
28
2.0
29
83
9
75
44
0
0
55
0.99
47509--47548
19
2.1
19
86
9
55
40
2
0
57
1.12
52723--52768
22
2.0
23
91
8
76
65
8
8
17
1.45
53677--53751
20
3.8
20
80
3
80
40
12
13
34
1.81
53674--53751
40
2.0
39
87
2
111
39
12
12
34
1.82
58111--58153
6
7.2
6
89
10
70
30
2
0
67
1.03
59475--59507
16
2.1
16
88
11
50
69
0
0
30
0.88
59477--59525
20
2.5
19
81
12
55
71
2
2
24
1.07
60720--60780
2
32.0
2
83
9
83
52
0
0
47
1.00
60756--60793
17
2.2
17
86
9
51
65
0
0
34
0.93
64640--64687
21
2.5
20
87
12
73
33
12
27
27
1.92
65575--65649
20
3.8
20
81
0
96
42
13
12
32
1.80
68721--68943
77
2.9
76
73
18
174
27
26
13
32
1.93
70452--70497
17
2.7
17
86
6
58
54
6
0
39
1.26
80255--80447
97
2.0
98
87
3
280
36
11
20
31
1.89
82475--82517
22
2.0
21
82
17
52
51
4
4
39
1.44
82807--82836
2
15.0
2
100
0
60
50
0
0
50
1.00

Tables:   1

The End!