genome.fa.s2673.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2673
Parameters: 2 7 7 80 10 50 1000
Length:  42711

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1609--1683	20	3.7	20	74	13	71	38	16	12	33	1.85
1630--1696	22	3.1	21	73	16	66	40	14	14	29	1.87
1610--1696	42	2.1	42	91	0	138	39	14	13	32	1.86
2817--2883	36	1.9	35	88	11	102	28	25	13	32	1.93
3338--3363	13	2.0	13	100	0	52	30	15	15	38	1.88
3318--3381	32	2.0	33	87	3	94	28	14	17	40	1.88
5476--5522	23	2.0	24	84	12	62	61	19	4	14	1.49
6413--6577	84	2.0	84	82	7	201	24	19	3	52	1.62
8102--8168	36	1.9	35	88	11	102	28	25	13	32	1.93
8627--8652	13	2.0	13	100	0	52	30	15	15	38	1.88
8607--8670	32	2.0	33	87	3	94	28	14	17	40	1.88
11603--12281	338	2.0	338	92	0	1135	30	17	20	31	1.96
14522--14547	13	2.0	13	100	0	52	38	15	15	30	1.88
14503--14567	33	2.0	33	87	6	96	41	16	13	27	1.87
16270--16396	20	5.8	20	71	20	94	40	11	17	30	1.85
16222--16396	90	1.9	91	90	3	282	41	11	17	30	1.84
21187--22184	59	17.0	59	74	9	615	26	31	12	30	1.93
21194--22184	30	33.8	28	73	11	525	26	30	12	30	1.93
21194--22096	147	6.1	146	76	6	682	26	31	12	29	1.93
21188--22071	88	10.0	88	74	9	438	26	31	12	29	1.92
22175--22274	31	3.2	31	85	2	128	32	29	18	21	1.96
22282--22619	31	10.5	33	74	6	266	32	26	16	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23001--23165	51	3.2	51	85	1	186	26	29	15	27	1.96
23016--23188	51	3.3	52	85	1	170	27	30	15	27	1.96
23070--23209	53	2.7	52	84	4	131	26	28	13	31	1.94
23230--23346	52	2.2	52	87	0	171	29	27	12	29	1.93
24126--24204	21	3.8	21	89	3	115	30	13	16	39	1.88
29106--29139	16	2.1	16	94	0	59	47	17	8	26	1.77
33613--33638	13	2.0	13	100	0	52	30	15	15	38	1.88
34412--34828	49	8.6	49	80	9	410	29	17	26	25	1.98
34412--34828	101	4.3	97	83	6	424	29	17	26	25	1.98
34412--34741	150	2.2	148	84	4	405	31	17	26	25	1.97
34707--34867	39	3.9	39	76	16	171	23	18	29	28	1.97
34658--34877	87	2.5	88	91	2	343	25	17	28	28	1.98
34894--35018	29	4.3	30	85	9	161	18	16	32	33	1.93
34882--35013	57	2.2	60	80	10	155	19	18	30	31	1.96
34894--35018	30	4.3	30	85	7	159	18	16	32	33	1.93
34999--35978	33	30.6	33	76	12	617	35	13	30	20	1.91
35205--35978	33	23.8	34	80	9	724	36	13	30	19	1.90
35159--35272	61	1.9	60	87	1	165	35	10	31	21	1.88
35273--35333	27	2.3	27	91	0	95	29	16	37	16	1.91
35532--35851	27	10.2	28	75	18	151	37	12	30	19	1.89
35694--35974	34	8.5	34	81	9	269	37	13	29	20	1.90
35818--35946	67	1.9	68	85	1	179	37	13	27	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38967--39034	33	2.1	33	86	8	95	33	14	17	33	1.91
39103--39127	13	1.9	13	100	0	50	36	16	16	32	1.90

Tables:   1

The End!