Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2674
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 49480
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Found at i:1850 original size:41 final size:41
Alignment explanation
Indices: 1789--1870 Score: 105
Period size: 41 Copynumber: 2.0 Consensus size: 41
1779 ATCAATGATA
* *
1789 TTCAAATACTATCATATGTAAACTTACGT-TAATTGATTTCC
1 TTCAAATACCATCATATGTAAACTTAC-TCCAATTGATTTCC
*
1830 TTCAAATACCATCACT-TGTAAAGTTACTCCAATTGATTTCC
1 TTCAAATACCATCA-TATGTAAACTTACTCCAATTGATTTCC
1871 ATGTCTTTGA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
40 1 0.03
41 34 0.94
42 1 0.03
ACGTcount: A:0.33, C:0.21, G:0.07, T:0.39
Consensus pattern (41 bp):
TTCAAATACCATCATATGTAAACTTACTCCAATTGATTTCC
Found at i:3273 original size:22 final size:23
Alignment explanation
Indices: 3241--3297 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 23
3231 GTAACAGAGC
*
3241 AATCGAGTTTAACATTTGAATT-
1 AATCGAGTTTAACATTCGAATTA
* * *
3263 AATTGAGTTTAATATTCGGATTA
1 AATCGAGTTTAACATTCGAATTA
3286 AATCGAGTTTAA
1 AATCGAGTTTAA
3298 GTTATTATAA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
22 18 0.62
23 11 0.38
ACGTcount: A:0.37, C:0.07, G:0.16, T:0.40
Consensus pattern (23 bp):
AATCGAGTTTAACATTCGAATTA
Found at i:6959 original size:20 final size:20
Alignment explanation
Indices: 6934--7145 Score: 104
Period size: 20 Copynumber: 9.6 Consensus size: 20
6924 TTTTAACTAG
6934 ATGTATCGATACATTGAAAA
1 ATGTATCGATACATTGAAAA
6954 ATGTATCGATACATTTGGAAAAAAAGATAGA
1 ATGTATCGATACA-TT-G------A-A-A-A
* *
6985 ATGTAACGATACATTGAATA
1 ATGTATCGATACATTGAAAA
* * *
7005 ATGTATCGATACATTCATAC
1 ATGTATCGATACATTGAAAA
*
7025 ATGTATTGATACATTG-AAA
1 ATGTATCGATACATTGAAAA
7044 ATGTATCGATACATCTGGGTAAAAAAAATAAA
1 ATGTATCGATACAT-T--G--------A-AAA
*
7076 ATGTATCGATACATTGAAGA
1 ATGTATCGATACATTGAAAA
* * *
7096 ATGTATCGATACA-TCATAC
1 ATGTATCGATACATTGAAAA
7115 ATGTATCGATACATTGAAAA
1 ATGTATCGATACATTGAAAA
*
7135 CTGTATCGATA
1 ATGTATCGATA
7146 ACATCTGGGT
Statistics
Matches: 146, Mismatches: 21, Indels: 50
0.67 0.10 0.23
Matches are distributed among these distances:
19 29 0.20
20 72 0.49
21 3 0.02
22 3 0.02
23 1 0.01
28 1 0.01
29 3 0.02
30 3 0.02
31 14 0.10
32 17 0.12
ACGTcount: A:0.43, C:0.11, G:0.16, T:0.30
Consensus pattern (20 bp):
ATGTATCGATACATTGAAAA
Found at i:7043 original size:91 final size:91
Alignment explanation
Indices: 6934--7160 Score: 352
Period size: 91 Copynumber: 2.5 Consensus size: 91
6924 TTTTAACTAG
* *
6934 ATGTATCGATACATTGAAAAATGTATCGATACAT-TTGG-AAAAAAAGATAGAATGTAACGATAC
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAAAAAAA-ATAAAATGTAACGATAC
*
6997 ATTGAATAATGTATCGATACATTCATAC
65 ATTGAAGAATGTATCGATACA-TCATAC
* *
7025 ATGTATTGATACATTG-AAAATGTATCGATACATCTGGGTAAAAAAAATAAAATGTATCGATACA
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAAAAAAAATAAAATGTAACGATACA
7089 TTGAAGAATGTATCGATACATCATAC
66 TTGAAGAATGTATCGATACATCATAC
*
7115 ATGTATCGATACATTGAAAACTGTATCGATAACATCTGGGTAAAAA
1 ATGTATCGATACATTGAAAAATGTATCGAT-ACATCTGGGTAAAAA
7161 TGTGACTTTT
Statistics
Matches: 125, Mismatches: 7, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
90 38 0.30
91 65 0.52
92 22 0.18
ACGTcount: A:0.43, C:0.11, G:0.16, T:0.30
Consensus pattern (91 bp):
ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAAAAAAAATAAAATGTAACGATACA
TTGAAGAATGTATCGATACATCATAC
Found at i:7904 original size:48 final size:48
Alignment explanation
Indices: 7842--8053 Score: 263
Period size: 48 Copynumber: 4.5 Consensus size: 48
7832 AGAAGAGTGC
** * * *
7842 CAATGTGCCAATTCAAGGCCAACGACATCGAGCTAAGGGAAAAGTTGA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAGTGGA
*
7890 CAATGTGATGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAGTGGA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAGTGGA
* *
7938 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAA--TAAAGGTGGA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAGTGGA
* * * *
7984 CAATGTGCTGATTCAAGGCTAGCGACATTGAGCTAA--TAAAGGT-GC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAGTGGA
* *
8029 CAATATGCTGATTCAATGCCAGCGA
1 CAATGTGCTGATTCAAGGCCAGCGA
8054 TATCGGACTT
Statistics
Matches: 150, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
45 23 0.15
46 50 0.33
48 77 0.51
ACGTcount: A:0.34, C:0.18, G:0.27, T:0.21
Consensus pattern (48 bp):
CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAGTGGA
Found at i:7964 original size:25 final size:24
Alignment explanation
Indices: 7936--8010 Score: 66
Period size: 25 Copynumber: 3.2 Consensus size: 24
7926 GGGAAAAGTG
7936 GACAATGTGCTGATTCAAGGCCAGC
1 GACAATGTGCTGATTCAAGG-CAGC
* * * * *
7961 GACATTGAGCT-AATAAAGG-TG-
1 GACAATGTGCTGATTCAAGGCAGC
7982 GACAATGTGCTGATTCAAGGCTAGC
1 GACAATGTGCTGATTCAAGGC-AGC
8007 GACA
1 GACA
8011 TTGAGCTAAT
Statistics
Matches: 36, Mismatches: 10, Indels: 8
0.67 0.19 0.15
Matches are distributed among these distances:
21 9 0.25
22 7 0.19
24 7 0.19
25 13 0.36
ACGTcount: A:0.32, C:0.19, G:0.28, T:0.21
Consensus pattern (24 bp):
GACAATGTGCTGATTCAAGGCAGC
Found at i:7979 original size:24 final size:23
Alignment explanation
Indices: 7952--8025 Score: 62
Period size: 24 Copynumber: 3.2 Consensus size: 23
7942 GTGCTGATTC
7952 AAGGCCAGCGACATTGAGCTAATA
1 AAGG-CAGCGACATTGAGCTAATA
* * * * *
7976 AAGG-TG-GACAATGTGCTGATTC
1 AAGGCAGCGACATTGAGCT-AATA
7998 AAGGCTAGCGACATTGAGCTAATA
1 AAGGC-AGCGACATTGAGCTAATA
8022 AAGG
1 AAGG
8026 TGCCAATATG
Statistics
Matches: 36, Mismatches: 10, Indels: 8
0.67 0.19 0.15
Matches are distributed among these distances:
21 9 0.25
22 7 0.19
24 11 0.31
25 9 0.25
ACGTcount: A:0.35, C:0.16, G:0.28, T:0.20
Consensus pattern (23 bp):
AAGGCAGCGACATTGAGCTAATA
Found at i:7985 original size:21 final size:22
Alignment explanation
Indices: 7959--8028 Score: 70
Period size: 21 Copynumber: 3.1 Consensus size: 22
7949 TTCAAGGCCA
7959 GCGACATTGAGCTAATAAAGGT
1 GCGACATTGAGCTAATAAAGGT
* * * *
7981 G-GACAATGTGCTGATTCAAGGCT
1 GCGACATTGAGCT-AATAAAGG-T
8004 AGCGACATTGAGCTAATAAAGGT
1 -GCGACATTGAGCTAATAAAGGT
8027 GC
1 GC
8029 CAATATGCTG
Statistics
Matches: 36, Mismatches: 8, Indels: 8
0.69 0.15 0.15
Matches are distributed among these distances:
21 9 0.25
22 9 0.25
23 2 0.06
24 7 0.19
25 9 0.25
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.23
Consensus pattern (22 bp):
GCGACATTGAGCTAATAAAGGT
Found at i:8015 original size:94 final size:92
Alignment explanation
Indices: 7832--8058 Score: 258
Period size: 94 Copynumber: 2.4 Consensus size: 92
7822 ACTTAAGGTG
* * ** * *
7832 AGAAGAGTGCCAATGTGCCAATTCAAGGCCAACGACATCGAGCTAAGGGAAAAGTTGACAATGTG
1 AGAAAAGTGACAATGTGCTGATTCAAGGCCAGCGACATCGAGCTAA-GGAAAAGTGGACAATGTG
7897 ATGATTCAAGGCCAGCGACATTGAGCTA
65 ATGATTCAAGGCCAGCGACATTGAGCTA
* * *
7925 AGGGAAAAGTGGACAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAA-TAAAGGTGGACAATG
1 A--GAAAAGT-GACAATGTGCTGATTCAAGGCCAGCGACATCGAGCTAAGGAAAAGTGGACAATG
* *
7989 TGCTGATTCAAGGCTAGCGACATTGAGCTA
63 TGATGATTCAAGGCCAGCGACATTGAGCTA
* * * * * *
8019 ATAAAGGTGCCAATATGCTGATTCAATGCCAGCGATATCG
1 AGAAAAGTGACAATGTGCTGATTCAAGGCCAGCGACATCG
8059 GACTTTAAGA
Statistics
Matches: 113, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
91 27 0.24
92 5 0.04
93 1 0.01
94 41 0.36
95 6 0.05
96 33 0.29
ACGTcount: A:0.34, C:0.18, G:0.27, T:0.21
Consensus pattern (92 bp):
AGAAAAGTGACAATGTGCTGATTCAAGGCCAGCGACATCGAGCTAAGGAAAAGTGGACAATGTGA
TGATTCAAGGCCAGCGACATTGAGCTA
Found at i:8222 original size:28 final size:28
Alignment explanation
Indices: 8166--11994 Score: 3348
Period size: 28 Copynumber: 136.0 Consensus size: 28
8156 CCACGACTTG
*
8166 TGTGGGCTTTAAAAGGGGATGCCACTGACT
1 TGTGGGCTTTGAAA-GGG-TGCCACTGACT
* * * *
8196 TATGGGCTTTTAAGGGGTACCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
8224 TGTAGGCTTTAAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * *
8252 TATGGGCTTTGGAAGGGTGCCATTGATT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
8280 TGTGTAGGCTTTGAAATGGTATGCCATTGACT
1 TGTG--GGCTTTGAAA-GG-GTGCCACTGACT
*
8312 TGTGGGCTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
8340 TGTGGGCTTTGAAAGGATGCCGCTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* ** *
8368 TTTGGGCTTTGAAAGAATGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
*
8396 TATGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
*** * *
8424 TGTGGGCTTTGAAAATATGCCACTAACA
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
8452 TGTGGGCTTTAAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
8480 TGTGGTCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GGTGCCACTGACT
* *
8509 TGTGGTCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GGTGCCACTGACT
* *
8538 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* ** *
8566 TGTAGGCTTTGAAAATGTGGCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
***
8594 TGTGGGCTTTGAAAATATGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
8622 TGTAGGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GGTGCCACTGACT
* * *
8651 TGTGAGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
8679 TATGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * *
8707 TATGGGCATTGAAAAGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
8735 TGTGGCCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * *
8763 TGTGGGCTTTAAAAGGATACCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
** *
8791 TGT-GGCTTTGAAAGGGTGTTACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * *
8818 TGTGGGCTTTAAAAAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
8846 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * * *
8874 TGTGGGTTTTGAAAAGTTACCA-TTACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
8901 TGTGGGCTTTTAAAGAGATGCCACTAACT
1 TGTGGGCTTTGAAAG-GGTGCCACTGACT
* * * *
8930 TGTGGTCTTTCG-AAGAGATGTCACTAACT
1 TGTGGGCTTT-GAAAG-GGTGCCACTGACT
* *
8959 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
8987 TGTAGG-TTTTAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
9014 TGTGGGC-TTGAAAAGATGCCATTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
9041 T-TTGGCTTTTTG-AAGAGATGCCA-TAGACT
1 TGTGGGC--TTTGAAAG-GGTGCCACT-GACT
* *
9070 TGTGGGCTTTGAAAGGATGCCACTCACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
9098 TATGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
**
9126 TGTGGGCTTTGAAAGCATGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
9154 TGTGGGCTTTGAAAAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
9182 TGT-GGCTTTGAAAGGATGCCACTAACC
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
9209 TGTGGTCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GGTGCCACTGACT
* * *
9238 TGTGGTCTTTG-AAGAGATGCCACTAACT
1 TGTGGGCTTTGAAAG-GGTGCCACTGACT
* * * * *
9266 TGTGGGTTTTGAAAAGATGTCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
9294 TGTGGGCTTTGAAAGGGTGCCATTCATT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
9322 TATGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* ** *
9350 TATGAGTTTTTG-AAGAGATGCCACTGACT
1 TGTG-GGCTTTGAAAG-GGTGCCACTGACT
* * *
9379 TGTGGGCTTTGAAAAGTTGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * * *
9407 TGTGCGCTTTGTAATGATACCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * *
9435 TGTGAGTTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
9463 TGTGGGCTTTGAAAGGGTGTCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
9491 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
** * *
9519 TGTGGGCTTTGAAA-GAAGCCATTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
9546 TATGAGCTTTGATAA-GATGCCACTGACT
1 TGTGGGCTTTGA-AAGGGTGCCACTGACT
* * * *
9574 TGTGGGTTTTGAAAGGATACCACTAAACT
1 TGTGGGCTTTGAAAGGGTGCCACT-GACT
* * * *
9603 TATGGTCTTTTG-AAGAGATGCCACTAACT
1 TGTGGGC-TTTGAAAG-GGTGCCACTGACT
** * * *
9632 TGTGTTCTTTG-AAGAGATGCCACTAACC
1 TGTGGGCTTTGAAAG-GGTGCCACTGACT
* * *
9660 TGTGGGTTTTG-AAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
*
9687 TGTGGGCTTTAAAAAGGGTGCCACTGACT
1 TGTGGGCTTT-GAAAGGGTGCCACTGACT
* *
9716 TGTGGGCTTTAAAAGGGTGCCATTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
***
9744 TGTGGGCTTTGAAAATATGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
9772 TATGGGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GGTGCCACTGACT
* * *
9801 TGTAGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
9829 TGTAGGCTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * *
9857 TGT-GGTTTTCGAAAAGATG-CATTGACT
1 TGTGGGCTTT-GAAAGGGTGCCACTGACT
*
9884 TGTGGGCTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* ** * *
9912 TGTGGTCTTCAAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
9940 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * * *
9968 TGTGGGCTTTCATAGAGTGCTACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
9996 TGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
10024 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* ** *
10052 TGTGGACTTTGAAAGAATGCCACTTACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
*
10080 TGTGGGCTTTGAAAGGGTGCCACTTACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * ** * *
10108 TATGGGCTTTGAAAAGAAGCCATTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
10136 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * * *
10164 TATGGGATTTAAAAGGGTACCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* ** *
10192 TGTGGGCCTTAGAAA-AATGCCACTAACT
1 TGTGGG-CTTTGAAAGGGTGCCACTGACT
* * * *
10220 TGTGAGCTTTTG-AAGAGATGCAACTAACT
1 TGTGGGC-TTTGAAAG-GGTGCCACTGACT
* * * * *
10249 TGTAGGCTTTCAAAGGATGCTACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
10277 TGTAGGCTTTGAAAAGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
10305 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
*
10333 TGTGGGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GGTGCCACTGACT
* *
10362 TGTGAGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
10390 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * * *
10418 TATGGGCATTGAAAAGGTACCACCGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
10446 TGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * *
10474 TGTGGGCTTTAAAAGGATACCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
*** *
10502 TGTGGGCTTTGAAAGGGTATTACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
10530 TGTGGGCTTTAAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
10558 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
10586 TGTGGGCTTTGAAAAGTTGCCAGT-ACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
10613 TGTGGGCTTTTAAAGAGATGCCACTAACT
1 TGTGGGCTTTGAAAG-GGTGCCACTGACT
* *
10642 TGTGGTCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GGTGCCACTGACT
* *
10671 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
10699 TGTAGGCTTT-AAAGGGTGTCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * * *
10726 TGTGGGTTTTAAAAAGATGCCATTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * *
10754 TGTGGGTTTTTAAAGAGATGCCATTGACT
1 TGTGGGCTTTGAAAG-GGTGCCACTGACT
* * * *
10783 TGTGGGTTTTTAAAGAGATGCCATTGACT
1 TGTGGGCTTTGAAAG-GGTGCCACTGACT
*
10812 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
10840 TATGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
*
10868 TGTGGGCTTTGAAAGGGTGTCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
10896 TGTGGGCTTTGAAAAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
10924 TGTGGGCTTTGAAAGGATGCCACTAACC
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
10952 TGTGGTCTTTTG-AAGAGATACCACTGACT
1 TGTGGGC-TTTGAAAG-GGTGCCACTGACT
* * *
10981 TGTGGTCTTTTG-AAGAGATGCCACTAACT
1 TGTGGGC-TTTGAAAG-GGTGCCACTGACT
* * * * * *
11010 TGTGTGTTTTGAAAAGATGTCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * *
11038 TATGGGTTTTGAAAGGGTGCCACTCATT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
11066 TATGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
11094 TGTGGGCTTTTGAAAAGATGCCATTGACT
1 TGTGGGC-TTTGAAAGGGTGCCACTGACT
** * * * *
11123 TGTTTGCTTTGAAAAGATGCCACTAACC
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
11151 TGTGGGCGTTGAAAGGATACCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * *
11179 TGTGAGTTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
*
11207 TGTGGGCTTTAAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
11235 TGTGGGCGTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
11263 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
*
11291 TGTGGGCTTTGATAA-GATGCCACTGACT
1 TGTGGGCTTTGA-AAGGGTGCCACTGACT
*
11319 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
11347 TAG-GGTCTTTTG-AAGAGATGCCACTGACT
1 T-GTGGGC-TTTGAAAG-GGTGCCACTGACT
** * *
11376 TGTGTTCTTTTG-AAGAGATGCCACTAACT
1 TGTGGGC-TTTGAAAG-GGTGCCACTGACT
* * * *
11405 TGTGTGATTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
11433 TGTGGGCTTTAAAAGGGTGCCGCTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
11461 TGTGGGCTTTGAAATGATGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
*
11489 TGTGGGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GGTGCCACTGACT
*
11518 TGTGGGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GGTGCCACTGACT
*
11547 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
11575 TGTAGGCTTGGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
11603 TGT-GGTTTTCGAAAAGATGCCACTGACT
1 TGTGGGCTTT-GAAAGGGTGCCACTGACT
* * *
11631 TGTGGGTTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
11659 TGTGGGCTTTGAAAGAGTGCTACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
11687 TGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
11715 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
11743 TGTGGGCTTCGAAAGGATGCCACTTACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
11771 TGTGGGCTTTGAAAGGGTGCCACT-ACCT
1 TGTGGGCTTTGAAAGGGTGCCACTGA-CT
** * * *
11799 TGTGGGCTTTGAAAGGAAGCGATTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
11827 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
11855 TGTGGGCTTTAAAAGGGTACCATTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
** * *
11883 TGTGGGCTTTGGAAA-AATGGCACTAACT
1 TGTGGGCTTT-GAAAGGGTGCCACTGACT
* *
11911 TGTGAGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GGTGCCACTGACT
* *
11940 TGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
*
11968 TGTGGGCTTTGAAAGGGTGCTACTGAC
1 TGTGGGCTTTGAAAGGGTGCCACTGAC
11995 ATGCCACTAA
Statistics
Matches: 3221, Mismatches: 497, Indels: 164
0.83 0.13 0.04
Matches are distributed among these distances:
26 4 0.00
27 218 0.07
28 2328 0.72
29 606 0.19
30 49 0.02
31 2 0.00
32 14 0.00
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (28 bp):
TGTGGGCTTTGAAAGGGTGCCACTGACT
Found at i:8246 original size:56 final size:56
Alignment explanation
Indices: 8166--13367 Score: 5450
Period size: 56 Copynumber: 91.9 Consensus size: 56
8156 CCACGACTTG
* * * * * * *
8166 TGTGGGCTTTAAAAGGGGATGCCACTGACTTATGGGCTTTTAAGGGGTACCACTGACT
1 TGTGGGCTTTGAAA--GGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * * * * *
8224 TGTAGGCTTTAAAAGGGTGCCACTGACTTATGGGCTTTGGAAGGGTGCCATTGATT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* *
8280 TGTGTAGGCTTTGAAATGGTATGCCATTGACTTGTGGGCTTTGAAAGGGTGCCACTAACT
1 TGTG--GGCTTTGAAA-GG-ATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * *
8340 TGTGGGCTTTGAAAGGATGCCGCTGACTTTTGGGCTTTGAAAGAATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * ** *
8396 TATGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAATATGCCACTAACA
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * *
8452 TGTGGGCTTTAAAAAGATGCCACTGACTTGTGGTCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC-TTTGAAAG-GATGCCACTAACT
*
8509 TGTGGTCTTTTG-AAGAGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * ** *
8566 TGTAGGCTTTGAAAATG-TGGCACTGACTTGTGGGCTTTGAAAATATGCCACTGACT
1 TGTGGGCTTTG-AAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * *
8622 TGTAGGCTTTTG-AAGAGATGCCACTGACTTGTGAGCTTTGAAAAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * *
8679 TATGGGCTTTGAAAGGATGCCACTAACTTATGGGCATTGAAAAGG-TGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTG-AAAGGATGCCACTAACT
* * * *
8735 TGTGGCCTTTGAAAAGATGCCACTGACTTGTGGGCTTTAAAAGGATACCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* ** * * *
8791 TGT-GGCTTTGAAAGGGTGTTACTAACTTGTGGGCTTTAAAAAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * *
8846 TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGTTTTGAAAAGTTACCA-TTACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * *
8901 TGTGGGCTTTTAAAGAGATGCCACTAACTTGTGGTCTTTCG-AAGAGATGTCACTAACT
1 TGTGGGCTTTGAAAG-GATGCCACTGACTTGTGGGCTTT-GAAAG-GATGCCACTAACT
* * * * *
8959 TGTGGGCTTTGAAAGGATGCCACTAACTTGTAGG-TTTTAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * *
9014 TGTGGGC-TTGAAAAGATGCCATTGACTT-TTGGCTTTTTG-AAGAGATGCCA-TAGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC--TTTGAAAG-GATGCCACTA-ACT
* *
9070 TGTGGGCTTTGAAAGGATGCCACTCACTTATGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* *
9126 TGTGGGCTTTGAAAGCATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * *
9182 TGT-GGCTTTGAAAGGATGCCACTAACCTGTGGTCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC-TTTGAAAG-GATGCCACTAACT
* * * * *
9238 TGTGGTCTTTG-AAGAGATGCCACTAACTTGTGGGTTTTGAAAAGATGTCACTAACT
1 TGTGGGCTTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * * *
9294 TGTGGGCTTTGAAAGGGTGCCATTCATTTATGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* ** * *
9350 TATGAGTTTTTG-AAGAGATGCCACTGACTTGTGGGCTTTGAAAAGTTGCCACTAACT
1 TGTG-GGCTTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * *
9407 TGTGCGCTTTGTAATGATACCACTGACTTGTGAGTTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * *
9463 TGTGGGCTTTGAAAGGGTGTCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * *
9519 TGTGGGCTTTGAAA-GAAGCCATTAACTTATGAGCTTTGATAA-GATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGA-AAGGATGCCACTAACT
* * * * *
9574 TGTGGGTTTTGAAAGGATACCACTAAACTTATGGTCTTTTG-AAGAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACT-GACTTGTGGGC-TTTGAAAG-GATGCCACTAACT
** * * *
9632 TGTGTTCTTTG-AAGAGATGCCACTAACCTGTGGGTTTTG-AAGGATGCCACTAACT
1 TGTGGGCTTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * *
9687 TGTGGGCTTTAAAAAGGGTGCCACTGACTTGTGGGCTTTAAAAGGGTGCCATTGACT
1 TGTGGGCTTT-GAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
** * *
9744 TGTGGGCTTTGAAAATATGCCACTGACTTATGGGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC-TTTGAAAG-GATGCCACTAACT
* * * *
9801 TGTAGGCTTTGAAAGGATGCCACTAACTTGTAGGCTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * *
9857 TGT-GGTTTTCGAAAAGATG-CATTGACTTGTGGGCTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTT-GAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* ** *
9912 TGTGGTCTTCAAAAAGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * *
9968 TGTGGGCTTTCATA-GAGTGCTACTAACTTGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * *
10024 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGACTTTGAAAGAATGCCACTTACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * *
10080 TGTGGGCTTTGAAAGGGTGCCACTTACTTATGGGCTTTGAAAAGAAGCCATTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * *
10136 TGTGGGCTTTGAAAGGATGCCACTAACTTATGGGATTTAAAAGGGTACCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * *
10192 TGTGGGCCTTAGAAA-AATGCCACTAACTTGTGAGCTTTTG-AAGAGATGCAACTAACT
1 TGTGGG-CTTTGAAAGGATGCCACTGACTTGTGGGC-TTTGAAAG-GATGCCACTAACT
* * * * * *
10249 TGTAGGCTTTCAAAGGATGCTACTAACTTGTAGGCTTTGAAAAGG-TGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTG-AAAGGATGCCACTAACT
* *
10305 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC-TTTGAAAG-GATGCCACTAACT
*
10362 TGTGAGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * *
10418 TATGGGCATTGAAAAGG-TACCACCGACTTGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTG-AAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * ***
10474 TGTGGGCTTTAAAAGGATACCACTAACTTGTGGGCTTTGAAAGGGTATTACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * *
10530 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * *
10586 TGTGGGCTTTGAAAAGTTGCCAGT-ACTTGTGGGCTTTTAAAGAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAG-GATGCCACTAACT
*
10642 TGTGGTCTTTTG-AAGAGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * * * *
10699 TGTAGGCTTT-AAAGGGTGTCACTGACTTGTGGGTTTTAAAAAGATGCCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * * *
10754 TGTGGGTTTTTAAAGAGATGCCATTGACTTGTGGGTTTTTAAAGAGATGCCATTGACT
1 TGTGGGCTTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAG-GATGCCACTAACT
*
10812 TGTGGGCTTTGAAAGGATGCCACTGACTTATGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * *
10868 TGTGGGCTTTGAAAGGGTGTCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * *
10924 TGTGGGCTTTGAAAGGATGCCACTAACCTGTGGTCTTTTG-AAGAGATACCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC-TTTGAAAG-GATGCCACTAACT
* * * * * *
10981 TGTGGTCTTTTG-AAGAGATGCCACTAACTTGTGTGTTTTGAAAAGATGTCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * * * *
11038 TATGGGTTTTGAAAGGGTGCCACTCATTTATGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * ** * *
11094 TGTGGGCTTTTGAAAAGATGCCATTGACTTGTTTGCTTTGAAAAGATGCCACTAACC
1 TGTGGGC-TTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * *
11151 TGTGGGCGTTGAAAGGATACCACTGACTTGTGAGTTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * *
11207 TGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCGTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* *
11263 TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGATAA-GATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGA-AAGGATGCCACTAACT
* *
11319 TGTGGGCTTTGAAAGGATGCCACTGACTTAG-GGTCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTT-GTGGGC-TTTGAAAG-GATGCCACTAACT
** * * *
11376 TGTGTTCTTTTG-AAGAGATGCCACTAACTTGTGTGATTTGAAAGGATGCCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * *
11433 TGTGGGCTTTAAAAGGGTGCCGCTGACTTGTGGGCTTTGAAATGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
*
11489 TGTGGGCTTTTG-AAGAGATGCCACTGACTTGTGGGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGC-TTTGAAAG-GATGCCACTAACT
* * *
11547 TGTGGGCTTTGAAAGGATGCCACTGACTTGTAGGCTTGGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * *
11603 TGT-GGTTTTCGAAAAGATGCCACTGACTTGTGGGTTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTT-GAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * *
11659 TGTGGGCTTTGAAA-GAGTGCTACTGACTTGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * *
11715 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTCGAAAGGATGCCACTTACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * *
11771 TGTGGGCTTTGAAAGGGTGCCACT-ACCTTGTGGGCTTTGAAAGGAAGCGATTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGA-CTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * *
11827 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTAAAAGGGTACCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * *
11883 TGTGGGCTTTGGAAA-AATGGCACTAACTTGTGAGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGCTTT-GAAAGGATGCCACTGACTTGTGGGC-TTTGAAAG-GATGCCACTAACT
*
11940 TGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAGGGTGCTACTGACATGCCACTAA
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAA----G-----G--ATGCCACTAA
12005 CT
55 CT
* * *
12007 TGTGGGCTTTGAAA-GAGTGCCACTGACTTGTGGGCTTTGAAAAGATGTCACTGACT
1 TGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * *
12063 TGTGGGCTTTGAAAGGATGCCACTAACTTGTAGGCTTT-AAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * *
12118 TGTGGGCTTTGAAAAGATTCCATTGACTTGTGGGTTTTTG-AAGAGATGCCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGG-CTTTGAAAG-GATGCCACTAACT
* * *
12175 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * *
12231 TGTGGAG-TTTGAAAAGAAGCCATTAACTTATGGGCTTTGAAAGGATGCCACTAACT
1 TGTGG-GCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * *
12287 TGTGGGCTTTAAAAGGGTACCATTGACTTGTGAGCTTTGGAAA-AATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTT-GAAAGGATGCCACTAACT
* * *
12343 TGTGAGCTTTTG-AAGATATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* *
12400 TGTGGGCTTTGAAAGGGTGCTACTGACATGCCACTAACTTGTGGGCTTTGAAA-GAGTGCCACTG
1 TGTGGGCTTTGAAA----G-----G--ATGCCACTGACTTGTGGGCTTTGAAAGGA-TGCCACTA
12464 ACT
54 ACT
* *
12467 TGTGGGCTTTGAAAAGATGTCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * *
12523 TGTAGGCTTT-AAAGGGTGCTACTGACTTGTGGGCTTTGAAAAGATGCCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * *
12578 TGTGGGTTTTTG-AAGAGATGCCATTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGG-CTTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * *
12635 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * *
12691 TGTGGGCTTTGAAAAGAAGCCATTAACTTGTGGGCTTTGAAAGGATGCCAGTAATT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * *
12747 TGTGGGCTTTAAAAGGGTACCATTGACTTGTGGGCTTTGGAAA-AATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTT-GAAAGGATGCCACTAACT
* *
12803 TGTGAGCTTTTG-AAGAGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* *
12860 TGTGGGCTTTGAAAGGGTGCTACTGACATGCCACTAACTTGTGGGCTTTGAAA-GAGTGCCACTG
1 TGTGGGCTTTGAAA----G-----G--ATGCCACTGACTTGTGGGCTTTGAAAGGA-TGCCACTA
12924 ACT
54 ACT
* * * * *
12927 TGTGGGCTTTGAAAGGACGCCACTGATTTGTGGGCTTTAAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* *
12983 TGTGGGCTTAGAAAAGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * *
13039 TGTGAGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
*
13095 TGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * *
13151 TGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * *
13207 TGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGATT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
** * *
13263 TGTGGGCTTTGAAAGGATGCCACCAACTTGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * *
13319 TTTGGTCTTTGAAAAGG-TGTCC-CTGACTTGTGGTCTTTGAAAGGATGCC
1 TGTGGGCTTTG-AAAGGATG-CCACTGACTTGTGGGCTTTGAAAGGATGCC
13368 TTTGACTTGT
Statistics
Matches: 4355, Mismatches: 618, Indels: 344
0.82 0.12 0.06
Matches are distributed among these distances:
53 3 0.00
54 18 0.00
55 402 0.09
56 2580 0.59
57 919 0.21
58 232 0.05
59 2 0.00
60 37 0.01
61 3 0.00
63 1 0.00
65 2 0.00
66 6 0.00
67 150 0.03
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.31
Consensus pattern (56 bp):
TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
Found at i:8413 original size:84 final size:84
Alignment explanation
Indices: 8166--13384 Score: 5448
Period size: 84 Copynumber: 61.5 Consensus size: 84
8156 CCACGACTTG
* * * * * * * *
8166 TGTGGGCTTTAAAAGGGGATGCCACTGACTTATGGGCTTTTAAGGGGTACCACTGACTTGTAGGC
1 TGTGGGCTTTGAAA--GGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGC
* *
8231 TTTAAAAGGGTGCCACTGACT
64 TTTGAAAGGATGCCACTGACT
* * * * * * *
8252 TATGGGCTTTGGAAGGGTGCCATTGATTTGTGTAGGCTTTGAAATGGTATGCCATTGACTTGTGG
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTG--GGCTTTGAAA-GG-ATGCCACTAACTTGTGG
* *
8317 GCTTTGAAAGGGTGCCACTAACT
62 GCTTTGAAAGGATGCCACTGACT
* * * *
8340 TGTGGGCTTTGAAAGGATGCCGCTGACTTTTGGGCTTTGAAAGAATGCCACTAACTTATGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
*
8405 TGAAAGGGTGCCACTGACT
66 TGAAAGGATGCCACTGACT
** * * * * * *
8424 TGTGGGCTTTGAAAATATGCCACTAACATGTGGGCTTTAAAAAGATGCCACTGACTTGTGGTCTT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGC-T
8489 TTG-AAGAGATGCCACTGACT
65 TTGAAAG-GATGCCACTGACT
* *
8509 TGTGGTCTTTTG-AAGAGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTAGGC
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGC
* *
8573 TTTGAAAATG-TGGCACTGACT
64 TTTG-AAAGGATGCCACTGACT
** * * *
8594 TGTGGGCTTTGAAAATATGCCACTGACTTGTAGGCTTTTG-AAGAGATGCCACTGACTTGTGAGC
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC-TTTGAAAG-GATGCCACTAACTTGTGGGC
*
8658 TTTGAAAAGATGCCACTGACT
64 TTTGAAAGGATGCCACTGACT
* * * * *
8679 TATGGGCTTTGAAAGGATGCCACTAACTTATGGGCATTGAAAAGG-TGCCACTAACTTGTGGCCT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTG-AAAGGATGCCACTAACTTGTGGGCT
*
8743 TTGAAAAGATGCCACTGACT
65 TTGAAAGGATGCCACTGACT
* * * * **
8763 TGTGGGCTTTAAAAGGATACCACTAACTTGT-GGCTTTGAAAGGGTGTTACTAACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
* * *
8827 TAAAAAGATGCCACTAACT
66 TGAAAGGATGCCACTGACT
* * * * * *
8846 TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGTTTTGAAAAGTTACCA-TTACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
* *
8910 TTAAAGAGATGCCACTAACT
66 TGAAAG-GATGCCACTGACT
* * * *
8930 TGTGGTCTTTCG-AAGAGATGTCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTAGG-
1 TGTGGGCTTT-GAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGC
* *
8993 TTTTAAAGGGTGCCACTGACT
64 TTTGAAAGGATGCCACTGACT
* * *
9014 TGTGGGC-TTGAAAAGATGCCATTGACTT-TTGGCTTTTTG-AAGAGATGCCA-TAGACTTGTGG
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC--TTTGAAAG-GATGCCACTA-ACTTGTGG
*
9075 GCTTTGAAAGGATGCCACTCACT
62 GCTTTGAAAGGATGCCACTGACT
* * * *
9098 TATGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGCATGCCACTGACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
* *
9163 TGAAAAGATGCCACTAACT
66 TGAAAGGATGCCACTGACT
* * * * *
9182 TGT-GGCTTTGAAAGGATGCCACTAACCTGTGGTCTTTTG-AAGAGATGCCACTGACTTGTGGTC
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC-TTTGAAAG-GATGCCACTAACTTGTGGGC
*
9245 TTTG-AAGAGATGCCACTAACT
64 TTTGAAAG-GATGCCACTGACT
* * * * * * * * *
9266 TGTGGGTTTTGAAAAGATGTCACTAACTTGTGGGCTTTGAAAGGGTGCCATTCATTTATGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
*
9331 TGAAAAGATGCCACTGACT
66 TGAAAGGATGCCACTGACT
* ** * * *
9350 TATGAGTTTTTG-AAGAGATGCCACTGACTTGTGGGCTTTGAAAAGTTGCCACTAACTTGTGCGC
1 TGTG-GGCTTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGC
* * *
9414 TTTGTAATGATACCACTGACT
64 TTTGAAAGGATGCCACTGACT
* * * * *
9435 TGTGAGTTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGGTGTCACTAACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
*
9500 TGAAAGGATGCCACTAACT
66 TGAAAGGATGCCACTGACT
* * * * * * *
9519 TGTGGGCTTTGAAA-GAAGCCATTAACTTATGAGCTTTGATAA-GATGCCACTGACTTGTGGGTT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGA-AAGGATGCCACTAACTTGTGGGCT
* *
9582 TTGAAAGGATACCACTAAACT
65 TTGAAAGGATGCCACT-GACT
* * * ** *
9603 TATGGTCTTTTG-AAGAGATGCCACTAACTTGTGTTCTTTG-AAGAGATGCCACTAACCTGTGGG
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAG-GATGCCACTAACTTGTGGG
* *
9666 TTTTG-AAGGATGCCACTAACT
63 CTTTGAAAGGATGCCACTGACT
* * * * * *
9687 TGTGGGCTTTAAAAAGGGTGCCACTGACTTGTGGGCTTTAAAAGGGTGCCATTGACTTGTGGGCT
1 TGTGGGCTTT-GAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCT
**
9752 TTGAAAATATGCCACTGACT
65 TTGAAAGGATGCCACTGACT
* * *
9772 TATGGGCTTTTG-AAGAGATGCCACTGACTTGTAGGCTTTGAAAGGATGCCACTAACTTGTAGGC
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGC
* *
9836 TTTGAAAGGGTGCCACTAACT
64 TTTGAAAGGATGCCACTGACT
* * * * *
9857 TGT-GGTTTTCGAAAAGATG-CATTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGTCT
1 TGTGGGCTTT-GAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCT
** *
9920 TCAAAAAGATGCCACTGACT
65 TTGAAAGGATGCCACTGACT
* * * *
9940 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTCATA-GAGTGCTACTAACTTGTGGGCT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGA-TGCCACTAACTTGTGGGCT
*
10004 TTGAAAAGATGCCACTGACT
65 TTGAAAGGATGCCACTGACT
* * * *
10024 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGACTTTGAAAGAATGCCACTTACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
* *
10089 TGAAAGGGTGCCACTTACT
66 TGAAAGGATGCCACTGACT
* * * * * * *
10108 TATGGGCTTTGAAAAGAAGCCATTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTATGGGATT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
* * * *
10173 TAAAAGGGTACCACTAACT
66 TGAAAGGATGCCACTGACT
* * * * * *
10192 TGTGGGCCTTAGAAA-AATGCCACTAACTTGTGAGCTTTTG-AAGAGATGCAACTAACTTGTAGG
1 TGTGGG-CTTTGAAAGGATGCCACTGACTTGTGGGC-TTTGAAAG-GATGCCACTAACTTGTGGG
* * *
10255 CTTTCAAAGGATGCTACTAACT
63 CTTTGAAAGGATGCCACTGACT
*
10277 TGTAGGCTTTGAAAAGG-TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCT
1 TGTGGGCTTTG-AAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGC-
10341 TTTG-AAGAGATGCCACTGACT
64 TTTGAAAG-GATGCCACTGACT
* * *
10362 TGTGAGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTATGGGCAT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
* *
10427 TGAAAAGG-TACCACCGACT
66 TG-AAAGGATGCCACTGACT
* * *
10446 TGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTAAAAGGATACCACTAACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
* *** *
10511 TGAAAGGGTATTACTAACT
66 TGAAAGGATGCCACTGACT
* * * *
10530 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
* * *
10595 TGAAAAGTTGCCAGT-ACT
66 TGAAAGGATGCCACTGACT
* * * *
10613 TGTGGGCTTTTAAAGAGATGCCACTAACTTGTGGTCTTTTG-AAGAGATGCCACTGACTTGTGGG
1 TGTGGGCTTTGAAAG-GATGCCACTGACTTGTGGGC-TTTGAAAG-GATGCCACTAACTTGTGGG
*
10677 CTTTGAAAGGATGCCACTAACT
63 CTTTGAAAGGATGCCACTGACT
* * * * * * * * *
10699 TGTAGGCTTT-AAAGGGTGTCACTGACTTGTGGGTTTTAAAAAGATGCCATTGACTTGTGGGTTT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
* *
10763 TTAAAGAGATGCCATTGACT
66 TGAAAG-GATGCCACTGACT
* * * * *
10783 TGTGGGTTTTTAAAGAGATGCCATTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTATGGGCT
1 TGTGGGCTTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCT
*
10848 TTGAAAGGATGCCACTAACT
65 TTGAAAGGATGCCACTGACT
* * *
10868 TGTGGGCTTTGAAAGGGTGTCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
* *
10933 TGAAAGGATGCCACTAACC
66 TGAAAGGATGCCACTGACT
* * * *
10952 TGTGGTCTTTTG-AAGAGATACCACTGACTTGTGGTCTTTTG-AAGAGATGCCACTAACTTGTGT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGC-TTTGAAAG-GATGCCACTAACTTGTGG
* * * *
11015 GTTTTGAAAAGATGTCACTAACT
62 GCTTTGAAAGGATGCCACTGACT
* * * * * * * *
11038 TATGGGTTTTGAAAGGGTGCCACTCATTTATGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGC-T
* *
11103 TTGAAAAGATGCCATTGACT
65 TTGAAAGGATGCCACTGACT
** * * * * * * * *
11123 TGTTTGCTTTGAAAAGATGCCACTAACCTGTGGGCGTTGAAAGGATACCACTGACTTGTGAGTTT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
*
11188 TGAAAGGATGCCACTAACT
66 TGAAAGGATGCCACTGACT
* * *
11207 TGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCGTTGAAAGGATGCCACTAACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
*
11272 TGAAAGGGTGCCACTGACT
66 TGAAAGGATGCCACTGACT
* *
11291 TGTGGGCTTTGATAA-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTAG-GGTC
1 TGTGGGCTTTGA-AAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTT-GTGGGC
11354 TTTTG-AAGAGATGCCACTGACT
64 -TTTGAAAG-GATGCCACTGACT
** * * *
11376 TGTGTTCTTTTG-AAGAGATGCCACTAACTTGTGTGATTTGAAAGGATGCCACTAACTTGTGGGC
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGC
* * *
11440 TTTAAAAGGGTGCCGCTGACT
64 TTTGAAAGGATGCCACTGACT
* *
11461 TGTGGGCTTTGAAATGATGCCACTGACTTGTGGGCTTTTG-AAGAGATGCCACTGACTTGTGGGC
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC-TTTGAAAG-GATGCCACTAACTTGTGGGC
11525 TTTTG-AAGAGATGCCACTGACT
64 -TTTGAAAG-GATGCCACTGACT
* * * *
11547 TGTGGGCTTTGAAAGGATGCCACTGACTTGTAGGCTTGGAAAGGGTGCCACTAACTTGT-GGTTT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
*
11611 TCGAAAAGATGCCACTGACT
66 T-GAAAGGATGCCACTGACT
* * * *
11631 TGTGGGTTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAA-GAGTGCTACTGACTTGTGGGCT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGA-TGCCACTAACTTGTGGGCT
*
11695 TTGAAAAGATGCCACTGACT
65 TTGAAAGGATGCCACTGACT
* * *
11715 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTCGAAAGGATGCCACTTACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
*
11780 TGAAAGGGTGCCACT-ACCT
66 TGAAAGGATGCCACTGA-CT
* * * *
11799 TGTGGGCTTTGAAAGGAAGCGATTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
* * * *
11864 TAAAAGGGTACCATTGACT
66 TGAAAGGATGCCACTGACT
* * * * *
11883 TGTGGGCTTTGGAAA-AATGGCACTAACTTGTGAGCTTTTG-AAGAGATGCCACTGACTTGTGGG
1 TGTGGGCTTT-GAAAGGATGCCACTGACTTGTGGGC-TTTGAAAG-GATGCCACTAACTTGTGGG
*
11946 CTTTGAAAAGATGCCACTGACT
63 CTTTGAAAGGATGCCACTGACT
* *
11968 TGTGGGCTTTGAAAGGGTGCTACTGACATGCCACTAACTTGTGGGCTTTGAAA-GAGTGCCACTG
1 TGTGGGCTTTGAAA----G-----G--ATGCCACTGACTTGTGGGCTTTGAAAGGA-TGCCACTA
* *
12032 ACTTGTGGGCTTTGAAAAGATGTCACTGACT
54 ACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
12063 TGTGGGCTTTGAAAGGATGCCACTAACTTGTAGGCTTT-AAAGGGTGCCACTGACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
* * *
12127 TGAAAAGATTCCATTGACT
66 TGAAAGGATGCCACTGACT
* *
12146 TGTGGGTTTTTG-AAGAGATGCCATTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGC
1 TGTGGG-CTTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGC
*
12210 TTTGAAAGGGTGCCACTGACT
64 TTTGAAAGGATGCCACTGACT
* * * * *
12231 TGTGGAG-TTTGAAAAGAAGCCATTAACTTATGGGCTTTGAAAGGATGCCACTAACTTGTGGGCT
1 TGTGG-GCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCT
* * * *
12295 TTAAAAGGGTACCATTGACT
65 TTGAAAGGATGCCACTGACT
* * * * * *
12315 TGTGAGCTTTGGAAA-AATGCCACTAACTTGTGAGCTTTTG-AAGATATGCCACTGACTTGTGGG
1 TGTGGGCTTT-GAAAGGATGCCACTGACTTGTGGGC-TTTGAAAG-GATGCCACTAACTTGTGGG
12378 CTTTGAAAGGATGCCACTGACT
63 CTTTGAAAGGATGCCACTGACT
* *
12400 TGTGGGCTTTGAAAGGGTGCTACTGACATGCCACTAACTTGTGGGCTTTGAAA-GAGTGCCACTG
1 TGTGGGCTTTGAAA----G-----G--ATGCCACTGACTTGTGGGCTTTGAAAGGA-TGCCACTA
* *
12464 ACTTGTGGGCTTTGAAAAGATGTCACTGACT
54 ACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
12495 TGTGGGCTTTGAAAGGATGCCACTAACTTGTAGGCTTT-AAAGGGTGCTACTGACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
* *
12559 TGAAAAGATGCCATTGACT
66 TGAAAGGATGCCACTGACT
* * *
12578 TGTGGGTTTTTG-AAGAGATGCCATTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC
1 TGTGGG-CTTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGC
* *
12642 TTTGAAAAGATGCCACTAACT
64 TTTGAAAGGATGCCACTGACT
* * * *
12663 TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAAGCCATTAACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
* * *
12728 TGAAAGGATGCCAGTAATT
66 TGAAAGGATGCCACTGACT
* * * * * *
12747 TGTGGGCTTTAAAAGGGTACCATTGACTTGTGGGCTTTGGAAA-AATGCCACTAACTTGTGAGCT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTT-GAAAGGATGCCACTAACTTGTGGGC-
12811 TTTG-AAGAGATGCCACTGACT
64 TTTGAAAG-GATGCCACTGACT
12832 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGGTGCTACTGACATGCCACTAA
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAA----G-----G--ATGCCACTAA
12897 CTTGTGGGCTTTGAAA-GAGTGCCACTGACT
55 CTTGTGGGCTTTGAAAGGA-TGCCACTGACT
* * * * *
12927 TGTGGGCTTTGAAAGGACGCCACTGATTTGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
* *
12992 AGAAAAGATGCCACTGACT
66 TGAAAGGATGCCACTGACT
* * * * *
13011 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGAGCTTTAAAAGGGTGCCACTGACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
*
13076 TGAAAAGATGCCACTGACT
66 TGAAAGGATGCCACTGACT
*
13095 TGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
*
13160 TGAAAAGATGCCACTGACT
66 TGAAAGGATGCCACTGACT
* * *
13179 TGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
*
13244 TGAAAGGATGCCACTGATT
66 TGAAAGGATGCCACTGACT
** * * * *
13263 TGTGGGCTTTGAAAGGATGCCACCAACTTGTGGGCTTTGAAAGGGTGCCACTGACTTTTGGTCTT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
13328 TGAAAAGG-TGTCC-CTGACT
66 TG-AAAGGATG-CCACTGACT
* ** *
13347 TGTGGTCTTTGAAAGGATGCCTTTGACTTGTGGTCTTT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTT
13385 AAAAAGGGCT
Statistics
Matches: 4354, Mismatches: 604, Indels: 352
0.82 0.11 0.07
Matches are distributed among these distances:
81 4 0.00
82 22 0.01
83 418 0.10
84 2219 0.51
85 1052 0.24
86 344 0.08
87 4 0.00
88 59 0.01
91 3 0.00
94 5 0.00
95 165 0.04
96 59 0.01
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.31
Consensus pattern (84 bp):
TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
TGAAAGGATGCCACTGACT
Found at i:12010 original size:39 final size:39
Alignment explanation
Indices: 11956--12033 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
11946 CTTTGAAAAG
* * *
11956 ATGCCACTGACTTGTGGGCTTTGAAAGGGTGCTACTGAC
1 ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
11995 ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
1 ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
12034 TTGTGGGCTT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (39 bp):
ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
Found at i:12036 original size:28 final size:29
Alignment explanation
Indices: 11995--13384 Score: 1162
Period size: 28 Copynumber: 48.8 Consensus size: 29
11985 TGCTACTGAC
*
11995 ATGCCACTAACTTGTGGGCTTTGAAAGAG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
12024 -TGCCACTGACTTGTGGGCTTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
12051 ATGTCACTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* *
12079 ATGCCACTAACTTGTAGGCTTT-AAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
12106 GTGCCACTGACTTGTGGGCTTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * *
12134 ATTCCATTGACTTGTGGGTTTTTG-AAGAG
1 ATGCCACTGACTTGTGGG-CTTTGAAAGAG
*
12163 ATGCCATTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
12191 ATGCCACTAACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
12219 GTGCCACTGACTTGTGGAG-TTTGAAA-AG
1 ATGCCACTGACTTGTGG-GCTTTGAAAGAG
* * * *
12247 AAGCCATTAACTTATGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* *
12275 ATGCCACTAACTTGTGGGCTTTAAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * * *
12303 GTACCATTGACTTGTGAGCTTTGGAAA-A-
1 ATGCCACTGACTTGTGGGCTTT-GAAAGAG
* * *
12331 ATGCCACTAACTTGTGAGCTTTTG-AAGAT
1 ATGCCACTGACTTGTGGGC-TTTGAAAGAG
12360 ATGCCACTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
12388 ATGCCACTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * * *** *** **
12416 GTGCTACTGACATG-CCACTAACTTGTGGGCT
1 ATGCCACTGACTTGTGGGCT---TTGAAAGAG
* ** * ** ** *
12447 TTGAAAGAGTGCCAC-TGACTTGTGGGCTTTGAAAAG
1 ATG--CCACTG--ACTTG---TG-GGCTTTGAAAGAG
*
12483 ATGTCACTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* *
12511 ATGCCACTAACTTGTAGGCTTT-AAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* *
12538 GTGCTACTGACTTGTGGGCTTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* *
12566 ATGCCATTGACTTGTGGGTTTTTG-AAGAG
1 ATGCCACTGACTTGTGGG-CTTTGAAAGAG
*
12595 ATGCCATTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
12623 ATGCCACTGACTTGTGGGCTTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
12651 ATGCCACTAACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
12679 GTGCCACTGACTTGTGGGCTTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * *
12707 AAGCCATTAACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * * *
12735 ATGCCAGTAATTTGTGGGCTTTAAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * *
12763 GTACCATTGACTTGTGGGCTTTGGAAA-A-
1 ATGCCACTGACTTGTGGGCTTT-GAAAGAG
* *
12791 ATGCCACTAACTTGTGAGCTTTTG-AAGAG
1 ATGCCACTGACTTGTGGGC-TTTGAAAGAG
12820 ATGCCACTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
12848 ATGCCACTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * * *** *** **
12876 GTGCTACTGACATG-CCACTAACTTGTGGGCT
1 ATGCCACTGACTTGTGGGCT---TTGAAAGAG
* ** * ** **
12907 TTGAAAGAGTGCCAC-TGACTTGTGGGCTTTGAA-AGG
1 ATG--CCACTG--ACTTG---TG-GGCTTTGAAAGA-G
* * *
12943 ACGCCACTGATTTGTGGGCTTTAAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* *
12971 GTGCCACTGACTTGTGGGCTTAGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
12999 ATGCCACTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * *
13027 ATGCCACTAACTTGTGAGCTTTAAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
13055 GTGCCACTGACTTGTGGGCTTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
13083 ATGCCACTGACTTGTGGGCTTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
13111 ATGCCACTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
13139 ATGCCACTAACTTGTGGGCTTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
13167 ATGCCACTGACTTGTGGGCTTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
13195 ATGCCACTGACTTGTGGGCTTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
13223 ATGCCACTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
13251 ATGCCACTGATTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
**
13279 ATGCCACCAACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * *
13307 GTGCCACTGACTTTTGGTCTTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* *
13335 GTGTCC-CTGACTTGTGGTCTTTGAAAG-G
1 ATG-CCACTGACTTGTGGGCTTTGAAAGAG
** *
13363 ATGCCTTTGACTTGTGGTCTTT
1 ATGCCACTGACTTGTGGGCTTT
13385 AAAAAGGGCT
Statistics
Matches: 1113, Mismatches: 176, Indels: 145
0.78 0.12 0.10
Matches are distributed among these distances:
27 60 0.05
28 883 0.79
29 120 0.11
30 12 0.01
31 4 0.00
32 3 0.00
33 10 0.01
34 10 0.01
35 4 0.00
36 7 0.01
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30
Consensus pattern (29 bp):
ATGCCACTGACTTGTGGGCTTTGAAAGAG
Found at i:12060 original size:67 final size:67
Alignment explanation
Indices: 11928--12061 Score: 209
Period size: 67 Copynumber: 2.0 Consensus size: 67
11918 TTTTGAAGAG
* * *
11928 ATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAGGGTGCTACTG
1 ATGCCACTAACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAAGATGCTACTG
11993 AC
66 AC
11995 ATGCCACTAACTTGTGGGCTTTG-AAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGATG-TCAC
1 ATGCCACTAACTTGTGGGCTTTGAAAAGA-TGCCACTGACTTGTGGGCTTTGAAAAGATGCT-AC
12058 TGAC
64 TGAC
12062 TTGTGGGCTT
Statistics
Matches: 62, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
66 6 0.10
67 56 0.90
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.28
Consensus pattern (67 bp):
ATGCCACTAACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAAGATGCTACTG
AC
Found at i:12442 original size:39 final size:39
Alignment explanation
Indices: 12388--12465 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
12378 CTTTGAAAGG
* * *
12388 ATGCCACTGACTTGTGGGCTTTGAAAGGGTGCTACTGAC
1 ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
12427 ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
1 ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
12466 TTGTGGGCTT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (39 bp):
ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
Found at i:12902 original size:39 final size:39
Alignment explanation
Indices: 12848--12925 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
12838 CTTTGAAAGG
* * *
12848 ATGCCACTGACTTGTGGGCTTTGAAAGGGTGCTACTGAC
1 ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
12887 ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
1 ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
12926 TTGTGGGCTT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (39 bp):
ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
Found at i:13374 original size:56 final size:56
Alignment explanation
Indices: 12888--13453 Score: 698
Period size: 56 Copynumber: 10.1 Consensus size: 56
12878 GCTACTGACA
*
12888 TGCCACTAACTTGTGGGCTTTGAAA-GAGTGCCACTGACTTGTGGGCTTTG-AAAGG
1 TGCCACTGACTTGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAAGG
* * * * * *
12943 ACGCCACTGATTTGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTAGAAAAGA
1 -TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGG
* *
13000 TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGAGCTTT-AAAAGGG
1 TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAA-GG
* *
13056 TGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAAGA
1 TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGG
* *
13112 TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAAGA
1 TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGG
* *
13168 TGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAAGA
1 TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGG
*
13224 TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGATTTGTGGGCTTTG-AAAGG
1 TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGG
** * * *
13279 ATGCCACCAACTTGTGGGCTTTGAAAGGGTGCCACTGACTTTTGGTCTTTGAAAAGG
1 -TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGG
* ** * *
13336 TGTCC-CTGACTTGTGGTCTTTGAAAGGATGCCTTTGACTTGTGGTCTTTAAAAAGGG
1 TG-CCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAA-GG
* * * * * * *
13393 CTGCCACGGAGTTGTGGTCTTT-ATAAGGTTGCCACGGAGTTGTGGAC-TT-AAAAGG
1 -TGCCACTGACTTGTGGGCTTTGA-AAGGATGCCACTGACTTGTGGGCTTTGAAAAGG
13448 TTGCCA
1 -TGCCA
13454 TGGAGTTATG
Statistics
Matches: 450, Mismatches: 49, Indels: 23
0.86 0.09 0.04
Matches are distributed among these distances:
55 15 0.03
56 379 0.84
57 23 0.05
58 33 0.07
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.30
Consensus pattern (56 bp):
TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGG
Found at i:13433 original size:28 final size:28
Alignment explanation
Indices: 12898--13475 Score: 197
Period size: 28 Copynumber: 20.6 Consensus size: 28
12888 TGCCACTAAC
* * * *
12898 TTGTGGGCTTTGAAAGAG-TGCCACTGAC
1 TTGTGGTCTTTAAAAG-GTTGCCACGGAG
* * ** * *
12926 TTGTGGGCTTTGAAAGGACGCCACTGAT
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
* * * *
12954 TTGTGGGCTTTAAAAGGGTGCCACTGAC
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
* * * * *
12982 TTGTGGGC-TTAGAAAAGATGCCACTGAC
1 TTGTGGTCTTTA-AAAGGTTGCCACGGAG
* * * ** *
13010 TTGTGGGCTTTGAAAGGATGCCACTAAC
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
* * *
13038 TTGTGAG-CTTTAAAAGGGTGCCACTGAC
1 TTGTG-GTCTTTAAAAGGTTGCCACGGAG
* * * *
13066 TTGTGGGCTTTGAAAA-GATGCCACTGAC
1 TTGTGGTCTTT-AAAAGGTTGCCACGGAG
* * * *
13094 TTGTGGGCTTTGAAAA-GATGCCACTGAC
1 TTGTGGTCTTT-AAAAGGTTGCCACGGAG
* * * ** *
13122 TTGTGGGCTTTGAAAGGATGCCACTAAC
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
* * * *
13150 TTGTGGGCTTTGAAAA-GATGCCACTGAC
1 TTGTGGTCTTT-AAAAGGTTGCCACGGAG
* * * *
13178 TTGTGGGCTTTGAAAA-GATGCCACTGAC
1 TTGTGGTCTTT-AAAAGGTTGCCACGGAG
* * * *
13206 TTGTGGGCTTTGAAAA-GATGCCACTGAC
1 TTGTGGTCTTT-AAAAGGTTGCCACGGAG
* * * * *
13234 TTGTGGGCTTTGAAAGGATGCCACTGAT
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
* * * ** *
13262 TTGTGGGCTTTGAAAGGATGCCACCAAC
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
* * * * *
13290 TTGTGGGCTTTGAAAGGGTGCCACTGAC
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
* * *
13318 TTTTGGTCTTTGAAAAGG-TGTCC-CTGAC
1 TTGTGGTCTTT-AAAAGGTTG-CCACGGAG
* * *** *
13346 TTGTGGTCTTTGAAAGGATGCCTTTGAC
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
*
13374 TTGTGGTCTTTAAAAAGGGCTGCCACGGAG
1 TTGTGGTCTTT-AAAA-GGTTGCCACGGAG
*
13404 TTGTGGTCTTTATAAGGTTGCCACGGAG
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
* *
13432 TTGTGGAC-TTAAAAGGTTGCCATGGAG
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
* * *
13459 TTATGGACTTAAAAAGG
1 TTGTGGTCTTTAAAAGG
13476 AATGCCACTA
Statistics
Matches: 488, Mismatches: 46, Indels: 32
0.86 0.08 0.06
Matches are distributed among these distances:
27 42 0.09
28 404 0.83
29 23 0.05
30 19 0.04
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
TTGTGGTCTTTAAAAGGTTGCCACGGAG
Found at i:13458 original size:27 final size:27
Alignment explanation
Indices: 13394--13472 Score: 113
Period size: 27 Copynumber: 2.9 Consensus size: 27
13384 TAAAAAGGGC
* *
13394 TGCCACGGAGTTGTGGTCTTTATAAGGT
1 TGCCACGGAGTTGTGGAC-TTAAAAGGT
13422 TGCCACGGAGTTGTGGACTTAAAAGGT
1 TGCCACGGAGTTGTGGACTTAAAAGGT
* *
13449 TGCCATGGAGTTATGGACTTAAAA
1 TGCCACGGAGTTGTGGACTTAAAA
13473 AGGAATGCCA
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
27 30 0.64
28 17 0.36
ACGTcount: A:0.25, C:0.14, G:0.30, T:0.30
Consensus pattern (27 bp):
TGCCACGGAGTTGTGGACTTAAAAGGT
Found at i:14866 original size:32 final size:30
Alignment explanation
Indices: 14812--14872 Score: 77
Period size: 32 Copynumber: 2.0 Consensus size: 30
14802 TGTTGTTCCC
*
14812 TTTTTATTTTATTTTTGCACTTTTTCTTTG
1 TTTTTATTTTATTTTTGCACTTTTGCTTTG
* *
14842 TTTTTCTTTTCATATTTTGTACTTTTGCTTT
1 TTTTTATTTT-AT-TTTTGCACTTTTGCTTT
14873 TGATATATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 9 0.35
31 2 0.08
32 15 0.58
ACGTcount: A:0.10, C:0.11, G:0.07, T:0.72
Consensus pattern (30 bp):
TTTTTATTTTATTTTTGCACTTTTGCTTTG
Found at i:24920 original size:25 final size:24
Alignment explanation
Indices: 24892--25016 Score: 97
Period size: 27 Copynumber: 4.9 Consensus size: 24
24882 AAGCCACCCA
24892 TTTGTTTGTCAAAAATGGTGGTTATT
1 TTTGTTTGTCAAAAATGGTGG-T-TT
24918 TTGTGTTTGTCAAAAATGGTGGTTT
1 TT-TGTTTGTCAAAAATGGTGGTTT
* ** *
24943 CCTTTGTATTTGTCAAATATGAAGGCTTG
1 --TTTG--TTTGTCAAAAATGGTGG-TTT
* * *
24972 TTTATTTGTCAAAATTGGTGGCTT
1 TTTGTTTGTCAAAAATGGTGGTTT
* *
24996 GTTGTTTGTCAAAATTGGTGG
1 TTTGTTTGTCAAAAATGGTGG
25017 CTAATTTTTA
Statistics
Matches: 80, Mismatches: 13, Indels: 14
0.75 0.12 0.13
Matches are distributed among these distances:
24 20 0.25
25 15 0.19
26 5 0.06
27 24 0.30
28 14 0.17
29 2 0.03
ACGTcount: A:0.22, C:0.07, G:0.25, T:0.46
Consensus pattern (24 bp):
TTTGTTTGTCAAAAATGGTGGTTT
Found at i:24949 original size:28 final size:27
Alignment explanation
Indices: 24894--24959 Score: 98
Period size: 27 Copynumber: 2.4 Consensus size: 27
24884 GCCACCCATT
24894 TGTTTGTCAAAAATGGTGGTTATTTTG
1 TGTTTGTCAAAAATGGTGGTTATTTTG
24921 TGTTTGTCAAAAATGGTGGTT-TCCTTTG
1 TGTTTGTCAAAAATGGTGGTTAT--TTTG
*
24949 TATTTGTCAAA
1 TGTTTGTCAAA
24960 TATGAAGGCT
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
26 1 0.03
27 21 0.58
28 14 0.39
ACGTcount: A:0.23, C:0.08, G:0.23, T:0.47
Consensus pattern (27 bp):
TGTTTGTCAAAAATGGTGGTTATTTTG
Found at i:25003 original size:24 final size:25
Alignment explanation
Indices: 24949--25018 Score: 90
Period size: 24 Copynumber: 2.8 Consensus size: 25
24939 GTTTCCTTTG
**
24949 TATTTGTC-AAATATGAAGGCTTGTT
1 TATTTGTCAAAAT-TGGTGGCTTGTT
24974 TATTTGTCAAAATTGGTGGCTTG-T
1 TATTTGTCAAAATTGGTGGCTTGTT
*
24998 TGTTTGTCAAAATTGGTGGCT
1 TATTTGTCAAAATTGGTGGCT
25019 AATTTTTATT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
24 21 0.51
25 16 0.39
26 4 0.10
ACGTcount: A:0.23, C:0.09, G:0.24, T:0.44
Consensus pattern (25 bp):
TATTTGTCAAAATTGGTGGCTTGTT
Found at i:29512 original size:24 final size:26
Alignment explanation
Indices: 29488--29610 Score: 83
Period size: 28 Copynumber: 4.7 Consensus size: 26
29478 GCCACCCATT
*
29488 TGTTTGTTAAAAATGGTGGTTATTTTG
1 TGTTTGTCAAAAATGGTGGTTA-TTTG
*
29515 TGTTTGTCAAAAATGGTGGTTTCCTTTG
1 TGTTTGTCAAAAATGGTGG-TT-ATTTG
* * * *
29543 TATTTGTCAAATATGGAGGCTT-GTT-
1 TGTTTGTCAAAAATGGTGG-TTATTTG
* * * *
29568 TATTTGTCAAAATTGGTGGCT-TGT-
1 TGTTTGTCAAAAATGGTGGTTATTTG
*
29592 TGTTTGTCAAAATTGGTGG
1 TGTTTGTCAAAAATGGTGG
29611 CTAATTTTTA
Statistics
Matches: 80, Mismatches: 14, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
24 20 0.25
25 16 0.20
26 2 0.03
27 18 0.22
28 24 0.30
ACGTcount: A:0.21, C:0.07, G:0.26, T:0.46
Consensus pattern (26 bp):
TGTTTGTCAAAAATGGTGGTTATTTG
Found at i:29543 original size:28 final size:27
Alignment explanation
Indices: 29488--29558 Score: 90
Period size: 27 Copynumber: 2.6 Consensus size: 27
29478 GCCACCCATT
*
29488 TGTTTGTTAAAAATGGTGGTTATTTTG
1 TGTTTGTCAAAAATGGTGGTTATTTTG
29515 TGTTTGTCAAAAATGGTGGTT-TCCTTTG
1 TGTTTGTCAAAAATGGTGGTTAT--TTTG
* *
29543 TATTTGTCAAATATGG
1 TGTTTGTCAAAAATGG
29559 AGGCTTGTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
26 1 0.03
27 20 0.51
28 18 0.46
ACGTcount: A:0.23, C:0.06, G:0.24, T:0.48
Consensus pattern (27 bp):
TGTTTGTCAAAAATGGTGGTTATTTTG
Found at i:29611 original size:24 final size:25
Alignment explanation
Indices: 29543--29612 Score: 99
Period size: 24 Copynumber: 2.8 Consensus size: 25
29533 GTTTCCTTTG
*
29543 TATTTGTC-AAATATGGAGGCTTGTT
1 TATTTGTCAAAAT-TGGTGGCTTGTT
29568 TATTTGTCAAAATTGGTGGCTTG-T
1 TATTTGTCAAAATTGGTGGCTTGTT
*
29592 TGTTTGTCAAAATTGGTGGCT
1 TATTTGTCAAAATTGGTGGCT
29613 AATTTTTATT
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
24 21 0.50
25 17 0.40
26 4 0.10
ACGTcount: A:0.21, C:0.09, G:0.26, T:0.44
Consensus pattern (25 bp):
TATTTGTCAAAATTGGTGGCTTGTT
Found at i:31309 original size:15 final size:15
Alignment explanation
Indices: 31289--31319 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
31279 AATAATTTGT
31289 ACACAATCTTACTTG
1 ACACAATCTTACTTG
31304 ACACAATCTTACTTG
1 ACACAATCTTACTTG
31319 A
1 A
31320 TTTGACAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.35, C:0.26, G:0.06, T:0.32
Consensus pattern (15 bp):
ACACAATCTTACTTG
Found at i:35105 original size:41 final size:41
Alignment explanation
Indices: 35045--35126 Score: 121
Period size: 41 Copynumber: 2.0 Consensus size: 41
35035 ATCAATGATA
* * *
35045 TTCAAATACTATCATATGTAAAGTTACGT-TAATTGATTTCC
1 TTCAAATACCATCACATGTAAAGTTAC-TCCAATTGATTTCC
35086 TTCAAATACCATCACATGTAAAGTTACTCCAATTGATTTCC
1 TTCAAATACCATCACATGTAAAGTTACTCCAATTGATTTCC
35127 ATTGTCTTTG
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
40 1 0.03
41 36 0.97
ACGTcount: A:0.34, C:0.20, G:0.09, T:0.38
Consensus pattern (41 bp):
TTCAAATACCATCACATGTAAAGTTACTCCAATTGATTTCC
Found at i:36555 original size:22 final size:23
Alignment explanation
Indices: 36527--36579 Score: 81
Period size: 22 Copynumber: 2.3 Consensus size: 23
36517 TAGAGCAATC
36527 GAGTTTAACATTCGAATT-AATT
1 GAGTTTAACATTCGAATTAAATT
* *
36549 GAGTTTAATATTCGGATTAAATT
1 GAGTTTAACATTCGAATTAAATT
36572 GAGTTTAA
1 GAGTTTAA
36580 GTTATTATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
22 16 0.57
23 12 0.43
ACGTcount: A:0.36, C:0.06, G:0.17, T:0.42
Consensus pattern (23 bp):
GAGTTTAACATTCGAATTAAATT
Found at i:40248 original size:20 final size:20
Alignment explanation
Indices: 40223--40438 Score: 144
Period size: 20 Copynumber: 9.7 Consensus size: 20
40213 TTTTAACTAG
40223 ATGTATCGATACATTGAAAA
1 ATGTATCGATACATTGAAAA
40243 ATGTATCGATACATTTGGAAAAAAAGATAGA
1 ATGTATCGATACA-TT-G------A-A-A-A
* *
40274 ATGTAACGATACATTGAAGA
1 ATGTATCGATACATTGAAAA
* * *
40294 ATGTATCGATACATTCATAC
1 ATGTATCGATACATTGAAAA
40314 ATGTATCGATACATTGAAAA
1 ATGTATCGATACATTGAAAA
40334 ATGTATCGATACATCTGGGTAAAAAAATAGA
1 ATGTATCGATACAT-T--G------AA-A-A
*
40365 ATGTATCGATACATTGAAGA
1 ATGTATCGATACATTGAAAA
* * *
40385 ATGTATCGATACATTTATAC
1 ATGTATCGATACATTGAAAA
40405 ATGTATCGATACATTGAAAA
1 ATGTATCGATACATTGAAAA
*
40425 CTGTATCGATACAT
1 ATGTATCGATACAT
40439 CTGGGTAAAA
Statistics
Matches: 155, Mismatches: 19, Indels: 44
0.71 0.09 0.20
Matches are distributed among these distances:
20 107 0.69
21 3 0.02
22 4 0.03
23 2 0.01
28 2 0.01
29 4 0.03
30 5 0.03
31 28 0.18
ACGTcount: A:0.42, C:0.12, G:0.16, T:0.30
Consensus pattern (20 bp):
ATGTATCGATACATTGAAAA
Found at i:40331 original size:91 final size:91
Alignment explanation
Indices: 40223--40449 Score: 384
Period size: 91 Copynumber: 2.5 Consensus size: 91
40213 TTTTAACTAG
*
40223 ATGTATCGATACATTGAAAAATGTATCGATACAT-TTGGAAAAAAAGATAGAATGTAACGATACA
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGAAAAAAA-ATAGAATGTAACGATACA
40287 TTGAAGAATGTATCGATACATTCATAC
65 TTGAAGAATGTATCGATACATTCATAC
* *
40314 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAAAAAAATAGAATGTATCGATACAT
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGAAAAAAAATAGAATGTAACGATACAT
*
40379 TGAAGAATGTATCGATACATTTATAC
66 TGAAGAATGTATCGATACATTCATAC
* *
40405 ATGTATCGATACATTGAAAACTGTATCGATACATCTGGGTAAAAA
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGAAAAAA
40450 TGTGCTTTTT
Statistics
Matches: 130, Mismatches: 5, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
91 121 0.93
92 9 0.07
ACGTcount: A:0.42, C:0.11, G:0.17, T:0.30
Consensus pattern (91 bp):
ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGAAAAAAAATAGAATGTAACGATACAT
TGAAGAATGTATCGATACATTCATAC
Found at i:41197 original size:48 final size:48
Alignment explanation
Indices: 41135--41312 Score: 270
Period size: 48 Copynumber: 3.8 Consensus size: 48
41125 AGAAGAGTGC
** * *
41135 CAATGTGCCAATTCAAGGCCAACGACATCGAGCTAAGGGAAAAGTTGA
1 CAATGTGCTGATTCAAGGCCAACGACATTGAGCTAAGGGAAAAGTGGA
41183 CAATGTGCTGATTCAAGGCCAACGACATTGAGCTAAGGGAAAAGTGGA
1 CAATGTGCTGATTCAAGGCCAACGACATTGAGCTAAGGGAAAAGTGGA
* *
41231 CAATGTGCTGATTCAAGGCCAACGACATTGAGCTAA--TAAAGGTGGA
1 CAATGTGCTGATTCAAGGCCAACGACATTGAGCTAAGGGAAAAGTGGA
* *
41277 CAATGTGCTGATTCAAGGCTAGCGACATTGAGCTAA
1 CAATGTGCTGATTCAAGGCCAACGACATTGAGCTAA
41313 TAAAGGTGCC
Statistics
Matches: 122, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
46 42 0.34
48 80 0.66
ACGTcount: A:0.35, C:0.19, G:0.26, T:0.20
Consensus pattern (48 bp):
CAATGTGCTGATTCAAGGCCAACGACATTGAGCTAAGGGAAAAGTGGA
Found at i:41278 original size:21 final size:22
Alignment explanation
Indices: 41253--41321 Score: 68
Period size: 21 Copynumber: 3.0 Consensus size: 22
41243 TCAAGGCCAA
41253 CGACATTGAGCTAATAAAGGTG
1 CGACATTGAGCTAATAAAGGTG
* * * *
41275 -GACAATGTGCTGATTCAAGGCTAG
1 CGACATTGAGCT-AATAAAGG-T-G
41299 CGACATTGAGCTAATAAAGGTG
1 CGACATTGAGCTAATAAAGGTG
41321 C
1 C
41322 CAATATGCTG
Statistics
Matches: 35, Mismatches: 8, Indels: 8
0.69 0.16 0.16
Matches are distributed among these distances:
21 9 0.26
22 8 0.23
23 2 0.06
24 7 0.20
25 9 0.26
ACGTcount: A:0.33, C:0.16, G:0.28, T:0.23
Consensus pattern (22 bp):
CGACATTGAGCTAATAAAGGTG
Found at i:41293 original size:46 final size:47
Alignment explanation
Indices: 41135--41342 Score: 260
Period size: 48 Copynumber: 4.4 Consensus size: 47
41125 AGAAGAGTGC
** * *
41135 CAATGTGCCAATTCAAGGCCAACGACATCGAGCTAAGGGAAAAGTTGA
1 CAATGTGCTGATTCAAGGCCAACGACATTGAGCTAA-GGAAAAGTGGA
41183 CAATGTGCTGATTCAAGGCCAACGACATTGAGCTAAGGGAAAAGTGGA
1 CAATGTGCTGATTCAAGGCCAACGACATTGAGCTAA-GGAAAAGTGGA
* *
41231 CAATGTGCTGATTCAAGGCCAACGACATTGAGCTAA-TAAAGGTGGA
1 CAATGTGCTGATTCAAGGCCAACGACATTGAGCTAAGGAAAAGTGGA
* * * * *
41277 CAATGTGCTGATTCAAGGCTAGCGACATTGAGCTAA-TAAAGGT-GC
1 CAATGTGCTGATTCAAGGCCAACGACATTGAGCTAAGGAAAAGTGGA
* *
41322 CAATATGCTGATTCAATGCCA
1 CAATGTGCTGATTCAAGGCCA
41343 GCGATATCGG
Statistics
Matches: 148, Mismatches: 12, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
45 19 0.13
46 49 0.33
48 80 0.54
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.21
Consensus pattern (47 bp):
CAATGTGCTGATTCAAGGCCAACGACATTGAGCTAAGGAAAAGTGGA
Found at i:41303 original size:25 final size:25
Alignment explanation
Indices: 41229--41303 Score: 68
Period size: 25 Copynumber: 3.2 Consensus size: 25
41219 GGGAAAAGTG
* *
41229 GACAATGTGCTGATTCAAGGCCAAC
1 GACAATGTGCTGATTCAAGGCTAGC
* * * *
41254 GACATTGAGCT-AATAAAGG-T-G-
1 GACAATGTGCTGATTCAAGGCTAGC
41275 GACAATGTGCTGATTCAAGGCTAGC
1 GACAATGTGCTGATTCAAGGCTAGC
41300 GACA
1 GACA
41304 TTGAGCTAAT
Statistics
Matches: 36, Mismatches: 10, Indels: 8
0.67 0.19 0.15
Matches are distributed among these distances:
21 9 0.25
22 6 0.17
23 1 0.03
24 7 0.19
25 13 0.36
ACGTcount: A:0.33, C:0.19, G:0.27, T:0.21
Consensus pattern (25 bp):
GACAATGTGCTGATTCAAGGCTAGC
Found at i:41310 original size:94 final size:95
Alignment explanation
Indices: 41135--41312 Score: 268
Period size: 94 Copynumber: 1.9 Consensus size: 95
41125 AGAAGAGTGC
*
41135 CAATGTGCCAATTCAAGGCCAACGACATCGAGCTAAGGGAAAAGTTGACAATGTGCTGATTCAAG
1 CAATGTGCCAATTCAAGGCCAACGACATCGAGCTAA-GGAAAAGTGGACAATGTGCTGATTCAAG
41200 GCCAACGACATTGAGCTAAGGGAAAAGTGGA
65 GCCAACGACATTGAGCTAAGGGAAAAGTGGA
** * * *
41231 CAATGTGCTGATTCAAGGCCAACGACATTGAGCTAA-TAAAGGTGGACAATGTGCTGATTCAAGG
1 CAATGTGCCAATTCAAGGCCAACGACATCGAGCTAAGGAAAAGTGGACAATGTGCTGATTCAAGG
* *
41295 CTAGCGACATTGAGCTAA
66 CCAACGACATTGAGCTAA
41313 TAAAGGTGCC
Statistics
Matches: 74, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
94 41 0.55
96 33 0.45
ACGTcount: A:0.35, C:0.19, G:0.26, T:0.20
Consensus pattern (95 bp):
CAATGTGCCAATTCAAGGCCAACGACATCGAGCTAAGGAAAAGTGGACAATGTGCTGATTCAAGG
CCAACGACATTGAGCTAAGGGAAAAGTGGA
Found at i:41544 original size:56 final size:56
Alignment explanation
Indices: 41460--48529 Score: 6816
Period size: 56 Copynumber: 125.7 Consensus size: 56
41450 CATCGACTTG
* * * *
41460 TGTGGGCTTTGAAAGGGGATGCCACTGACTTGTGGGCTTTGAAGGGGTACCACTGACT
1 TGTGGGCTTTGAAA--GGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * * * * *
41518 TGTAGG-TTTTAAACGGGTGCCACTGACTTATGGGCTTTGGAAGGGTGCCATTGATT
1 TGTGGGCTTTGAAA-GGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * *
41574 TGTGTAAGCTTTGAAATGGTATGCCATTAACTTGTGGGCTTTGAAAGGGTGCCACTAACT
1 TGTG--GGCTTTGAAA-GG-ATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * *
41634 TGTGGGCTTTGAAAGGATGCCGCTGACTTGTGGGCTTTAAAAGAATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * **
41690 TATGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAATATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * *
41746 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGTCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC-TTTGAAAG-GATGCCACTAACT
*
41803 TGTGGTCTTTTG-AAGAGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
** * * ** *
41860 TGTAAGCTTTGAAAATG-TGCCACTGACTTATGGGCTTTGAAAATATGCCACTGACT
1 TGTGGGCTTTG-AAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * *
41916 TCTAGGCTTTTG-AAGAGATGCCACTGACTTGTGAGCTTTGAAAGGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * *
41973 TATGGGCTTTCAAAGGATGCCACTAACTTATGGGCATTGAAAAGG-TGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTG-AAAGGATGCCACTAACT
* * * *
42029 TGTGGCCTTTGAAAAGATGCCACTGACTTGTGGGCTTTAAAAGGATACCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* ** * *
42085 TGTGGGCTTTGAAAGGGTGTTACTAACTTGTGGGCTTTAAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * *
42141 TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGTTTTGAAAAGTTGCCA-TTACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * *
42196 TGTGGGCTTTTAAAGAGATGCCACTAACTTGTGGTCTTTCG-AAGAGATGTCACTGACT
1 TGTGGGCTTTGAAAG-GATGCCACTGACTTGTGGGCTTT-GAAAG-GATGCCACTAACT
* * * * *
42254 TGTGGGCTTTGAAAGGATGCCACTAACTTGTAGG-TTTTAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * *
42309 TGTGGGCTTTGAAAAGATGCCATTGACTT-TTGGCTTTTG-AAGAGATGCCA-TAGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC-TTTGAAAG-GATGCCACTA-ACT
* * *
42365 TATGGGCTTTGAAAGGATGCCACTCACTTATGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* *
42421 TGTGAGCTTTGAAAGCG-TGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
1 TGTGGGCTTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * *
42477 TGTGGGCTTTAAAAAGATGCCACTAACTTGTGGTCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC-TTTGAAAG-GATGCCACTAACT
* * * * *
42534 TGTGGTCTTTTG-AAGAGATGCCACTGAATTGTGGGTTTTGAAAAGATGTCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * * *
42591 TGTGGGCTTTGAAAGGGTGCCATTCATTTATGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * *
42647 TATGGGTTTTG-AAGAAATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
1 TGTGGGCTTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * *
42703 TGTGGGCTTTGTAATGATACCACTGACTTGTGAGTTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* *
42759 TGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* *
42815 TGTGGGCTTTGAAAGGGTGCCACTGACTTATGGGCTTTGATAA-GATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGA-AAGGATGCCACTAACT
* * * * *
42871 TG-GGGATTTTGAAAGGATACCACTGACTTATGGTCTTTTG-AAGAGATGCCACTGACT
1 TGTGGG-CTTTGAAAGGATGCCACTGACTTGTGGGC-TTTGAAAG-GATGCCACTAACT
** * * * *
42928 TGTGTTCTTTTG-AAGAGATGCCACTAACCTGTGGGTTTTGAAAGGATGCCACTAACG
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * *
42985 TGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTTAAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * *
43041 TGTGGGCTTTGAAAAGATGCCACTAACTTATGTGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC-TTTGAAAG-GATGCCACTAACT
* * * * *
43098 TGTAGGCATTGAAAGGATGCCACTAACTTGTAGGCTTTGAAAGGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAA-GGATGCCACTAACT
* * * *
43155 TGT-GGTTTTCGAAAAGATGCCATTGACTTGTGGGCTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTT-GAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* ** *
43211 TGTGGTCTTCAAAAAGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * *
43267 TGTGGGCTTTCATA-GAGTGCTACTGACTTGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * *
43323 TGTGGGTTTTGAAAGGATGCCACTAACTCGTGGGCTTTAAAAGGATGCCACTTACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * *
43379 TGTGGGCTTTCAAAGGGTGCCACTTACTTGTGGGCTTTGAAAAGAAGCCATTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * *
43435 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGATTTAAAAGGGTACCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * *
43491 TGTGGGCTTTGGAAA-AATGCCACTAACTTGTGAGCTTTTG-AAGAGATGCAACTGACT
1 TGTGGGCTTT-GAAAGGATGCCACTGACTTGTGGGC-TTTGAAAG-GATGCCACTAACT
* * * * * * *
43548 TGTAGGCTTTGAAAGGATGCTACTAACTTGTAGGCTTTGAAAATG-TGTCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTG-AAAGGATGCCACTAACT
* * *
43604 CGTGGGCATTGAAAGGATGCCACTAACTTGTGGGCTTTTGAATA-GATGCCAC-AGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC-TTTGAA-AGGATGCCACTA-ACT
* *
43661 TGTGAGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * *
43717 TGTAGGCTTTGAAAAGATGCCATTGACTTGTGGGTTTTTG-AAGAGATGCCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGG-CTTTGAAAG-GATGCCACTAACT
*
43774 TGTGAGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* *
43830 TGTGGGCTTTGAAAAGG-TACCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTG-AAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * ***
43886 TGTGGGCTTTAAAAGGATACCACTAACTTGTAGGCTTTGAAAGGGTATTACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * *
43942 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * *
43998 TGTGGGTTTTGAAAAGTTGCCA-TTACTTGTGGGCTTTTAAAGAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAG-GATGCCACTAACT
*
44054 TGTGGTCTTTTGAACA-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGC-TTTGAA-AGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * * *
44111 TGTAGGC-CTG-AAGGGTGTCACTGACTTGTGGGCTTTAAAAAGG-TGCCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTT-GAAAGGATGCCACTAACT
* * * * ***
44165 TGTGGGTTTTTAAAGAGATGCCATTGACTTGTGGGCTTTGAAAGGGTATTACTAACT
1 TGTGGGCTTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * *
44222 TATGGGCTTTGAAAGGTTGCCACTAACTTGT-GGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* ** *
44277 TGTGGGCTTTGAAAAGATGCCACAAACTTGTGGGCTTTGAAAGGATGCCACT-ACC
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * *
44332 TGTGGTCTTTTG-AAGAAATGCCACTGACTTGTGGTCTTTTGAAAAGATGCCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGC-TTTGAAAGGATGCCACTAACT
* * * * *
44390 TGTGGTCTTTTG-AAGAGATGCCACTAACTTGTGGGTTTTGAAAAGATGTCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * * * * *
44447 TGTGGGTTTTGAAAGGGTGCCACTCATTTATGGGCTTTGAAAAGATACGACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* ** * *
44503 TGTGGGCTTTTG-AAGAGATGCCACTAACTTGTTTGTTTTGAAAAGATGCCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * *
44560 TGTGGGCTTTGAAAGGATACCACTCACTTGTGAGTTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * *
44616 TGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * *
44672 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
44728 TGTGGGCTTTGATAA-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGA-AAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* **
44784 TAG-GGTCTTTTG-AAGAGATGCCACTGACTTGTGTTCTTTTGAATA-GATGCCACTAACT
1 T-GTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGC-TTTGAA-AGGATGCCACTAACT
* * * * * * * * ** *
44842 TGTGTGATTTGAAAAGATGCCACTAACTTGTGCGCCTTAAAAGGGTGCTGCTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * *
44898 TGTGGGCTTTGAAATGATGGCACTGACTTGTAGGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC-TTTGAAAG-GATGCCACTAACT
* * * *
44955 TGTGGGCTTTTG-AAGAGATGCCACTTACGTGTGGGCTTTGAAAGGATGCCCCTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * ** * *
45012 TGTAGGCTTTGAAAGGGTGCCACTAACTTGTGGTATTCGAAAAGATGCCACTAAC-
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * *
45067 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAA-GAGTGCTACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGA-TGCCACTAACT
* *
45123 TGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * *
45179 TATGGGCTTTGAAAGGATGCCACTTACTTGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * *
45235 TTTGGGCTTGGAAAAGAAGCCATTAACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * *
45291 TGTGGGCTTT-AAAAGAGTACCATTGACTTGTGGGCTTTGGAAA-AATGCCACTAACT
1 TGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGGGCTTT-GAAAGGATGCCACTAACT
*
45347 TGTGAGCTTTTG-AAGAGAT-CCA-TGACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* *
45402 TGTGGGCTTTGAAAGGGTGCTACTGACATGCCACTAACTTGTGGGCTTTGAAA-GAGTGCCACTG
1 TGTGGGCTTTGAAA----G-----G--ATGCCACTGACTTGTGGGCTTTGAAAGGA-TGCCACTA
45466 ACT
54 ACT
* * * *
45469 T-TGGGCTTTGAAAAGATGTCACTGACTT-TGAGCTTTG-AA-GATGCCTCTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * *
45521 TGTAGGCTTT-AAAGGGTGCCACTGACTTGTAGGCTTTGAAAAGATGCCATTTACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * *
45576 TGTGGGTTTTTG-AAGAGATGCCATTGACTGTGTGAGCTTTGAAAGGATGCCACTAA-T
1 TGTGGG-CTTTGAAAG-GATGCCACTGACT-TGTGGGCTTTGAAAGGATGCCACTAACT
* *
45633 TGTGGGCTTTGAAAGGA-GCCCAC-GACTTGT-GGCTTTGAAAAGG-TACCACTGACT
1 TGTGGGCTTTGAAAGGATG-CCACTGACTTGTGGGCTTTG-AAAGGATGCCACTAACT
*
45687 TGTGGGCTTTGAAAGGATGCCACTGACTT-TGGGCTTTAAAAGGA-GACCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATG-CCACTAACT
* * * *
45742 TGTAGGCTTTGAAAGGGTAG-TACTAACTTGTGGGCTTT-AAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGAT-GCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * *
45797 TGTGGGCTTTGAAAGGATGCCACTGACTGGTGGGTTTTGAAAAGTTGCCA-TTACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * *
45852 TGT-GGCTGTTTAAAGAATGCCACTAACTTGTGGTCTTTTGAACA-GATGCCACTGGACT
1 TGTGGGCT-TTGAAAGGATGCCACTGACTTGTGGGC-TTTGAA-AGGATGCCACT-AACT
* * * * *
45910 TGTGGGCTTTGAAAGGACTGCCACTAACTTGTAGGCTTT-AAAGGGTGTCACTGACT
1 TGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * *
45966 TGTGGGCTTTAAAAGG-TGCCATTGACTTGTGGG-TTT-TAAGAGATG-CATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAG-GATGCCACTAACT
* ** * *
46019 TGTGGGCTTTGAAAAGA-GATACTAACTT-TGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* *
46073 TGTGGGCTTTGAAAAGATTGCCACT-ACTTGTGGGCTTTGAAAGGATGCCACTAACC
1 TGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * *
46129 TGTGGTCTTTTGAAGGACGAAATGCCACTGACTTG-GGTCTTTTGAAAAGATGCCACTAACT
1 TGTGGGC-TTTGAA--A-G-GATGCCACTGACTTGTGGGC-TTTGAAAGGATGCCACTAACT
* * * * *
46190 TGTGGTCTTTTG-AAGACATGCCACTAAACTTGT-GGTTTTGAAA-GATGTCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACT-GACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * * * * *
46246 TGT-GGTTTTGAAAGGGTGCCACTCATTTATGGGCTTTGAAAAGATACGACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * ** *
46301 TGTGGGCTTTTGAGA-GATGCCACTAAC-TGTTTG-TTTGAAAAGAT-CCACTAACT
1 TGTGGGC-TTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * *
46354 TGTGGGCTTTG-AAGGATACCACTCACTTGTGAG-TTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
*
46408 TGTGGGCTTTAAAATGG-TGCCACTGACTTGTGGGCTTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAA-GGATGCCACTGACTTGTGGGC-TTTGAAAGGATGCCACTAACT
* *
46465 TGTGGGCTTTGAAAGGGTGCCACTGAC-T-TGGGCTTTGATAA-GATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGA-AAGGATGCCACTAACT
* * *
46519 TGTGGGCTTTGAAAGGATG-CACTAACTTAG-GGTCTTTG-AAGAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTT-GTGGGCTTTGAAAG-GATGCCACTAACT
** * * * *
46574 TGTGTTCTTTTGAATA-GATGCCACTAACTTGTGTGATTTGAAAAGATGCCACTAAC-
1 TGTGGGC-TTTGAA-AGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * ** * * *
46630 TGTGCGCCTTAAAAGGGTGCTGCTGACTTGTGGGCTTTGAAATGATGGCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* *
46686 TGTAGGCTTTTG-AAGAGATGCCACTGACTTGTGGGCTTTTG-AAGAGATGCCACTTACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGC-TTTGAAAG-GATGCCACTAACT
* * *
46744 TGTGGGCTTTGAAAGGATGCCCCTGACTTGTAGGCTTTGAAAGGGTGCC-CTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
** * * *
46799 TGTGGTATTCGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * *
46855 TGTGGGCTTTGAAAAG-TGCTACTGACTTGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * *
46910 TGTGGGCTTTGAAAGGATGCCACTAACTTATGGGCTTTGAAAGGATGCCATTTACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * *
46966 TGTGGGCTTTGAAAGGGTGCCACTGACTTTTGGGCTTGGAAAAGAAGCCATTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * *
47022 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTAAAAGAGAGTACCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAG-GA-TGCCACTAACT
* * * * *
47080 TGTGGGCTTTGGAAA-AATGCCACTAACTTGTGAGCTTTG-AAGAGATGCCATTGACT
1 TGTGGGCTTT-GAAAGGATGCCACTGACTTGTGGGCTTTGAAAG-GATGCCACTAACT
*
47136 TGTGGGC-TTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGGTGCTACTGACATGCCACTAA
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAA----G-----G--ATGCCACTAA
47200 CT
55 CT
* * *
47202 TGT-GGCTTTGAAA-GAGTGCCACTGACTTGTGGGCTTTGAAAAGATGTCACTGACT
1 TGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * *
47257 TGTGAGCTTTGAAAGGATGCCTCTAACTTGTAGGCTTT-AAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * * *
47312 TGTAGGCTTTGAAAAGATGCCATTTACTTGTGGGTTTTTG-AAGAGATGCCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGG-CTTTGAAAG-GATGCCACTAACT
* *
47369 TGTGAGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* *
47425 TGTGGGCTTTGAAAAGG-TACCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTG-AAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * ***
47481 TGTGGGCTTTAAAAGGATACCACTAACTTGTAGGCTTTGAAAGGGTATTACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * *
47537 TGTGGGCTTTAAAAGGATGCCACTAACTT-TGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * *
47592 TGTGGGTTTTGAAAAGTTGCCA-TTACTTGTGGGCTTTTAAAGAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAG-GATGCCACTAACT
*
47648 TGTGGTCTTTTGAACA-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGC-TTTGAA-AGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * *
47705 TGTAGGCTTT-AAAGGGTGTCACTGACTTGTGGGCTTTAAAAAGG-TGCCATTGGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTT-GAAAGGATGCCACT-AACT
* * * * *
47761 TGTGGGTTTTTAAAGAGATGTCATTGACTTGTGGGCTTTGAAAGAGTAT--TACTAACT
1 TGTGGGCTTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAG-G-ATGCCACTAACT
* * * *
47818 TATGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * *
47874 TGTGGGCTTTGAAAAGATGCCACTAAACTTGTGGGCTTTGAAAGGATGCCACTAACC
1 TGTGGGCTTTGAAAGGATGCCACT-GACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * *
47931 TGTGGTCTTTTG-AAGAAATGCCACTGACTTGTGGTCTTTTGAAAAGATGCCACT-ACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGC-TTTGAAAGGATGCCACTAACT
* * * * *
47988 TGTGGTCTTTTG-AAGAGATGCCACTAACTTGTGGGTTTTGAAAAGATGTCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * * * *
48045 TGTGGGTTTTGAAATGG-TGCCACTCATTTATGGGCTTTGAAAAGATACGACTGACT
1 TGTGGGCTTTGAAA-GGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* **
48101 TGTGGGCTTTTG-AAGAGATGCCACTAACTTGTTTG-TTTGAAA-GATGCCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * *
48156 TGTGGGCTTTGAAAGGATACCACTCACTTGTGAG-TTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
48211 TGTGGGCTTT-AAATGG-TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAA-GGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
*
48266 TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGATAA-GATGCCAC-AGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGA-AAGGATGCCACTA-ACT
* * *
48322 TGTGGGC-TTGAAAGGATGCCACTAACTTAG-GGTCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTT-GTGGGC-TTTGAAAG-GATGCCACTAACT
** * * * *
48378 TGTGTTCTTTTGAATA-GATGCCACTAACTTGTGTGATTTGAAAAGATGCCACTAACT
1 TGTGGGC-TTTGAA-AGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * ** * * *
48435 TGTGCGCCTTAAAAGGGTGCTGCTGACTTGTGGGCTTTGAAATGATGGCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
*
48491 TGTAGGCTTTTG-AAGAGATGCCACTGACTTGTGGGCTTT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTT
48530 TGAAGAGATA
Statistics
Matches: 5849, Mismatches: 879, Indels: 569
0.80 0.12 0.08
Matches are distributed among these distances:
51 1 0.00
52 43 0.01
53 113 0.02
54 287 0.05
55 869 0.15
56 2735 0.47
57 1172 0.20
58 409 0.07
59 36 0.01
60 49 0.01
61 37 0.01
63 1 0.00
64 1 0.00
65 7 0.00
66 60 0.01
67 29 0.00
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (56 bp):
TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
Found at i:41728 original size:28 final size:28
Alignment explanation
Indices: 41460--48529 Score: 6164
Period size: 28 Copynumber: 251.4 Consensus size: 28
41450 CATCGACTTG
41460 TGTGGGCTTTGAAAGGGGATGCCACTGACT
1 TGTGGGCTTTGAAA--GGATGCCACTGACT
* * *
41490 TGTGGGCTTTGAAGGGGTACCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
41518 TGTAGG-TTTTAAACGGGTGCCACTGACT
1 TGTGGGCTTTGAAA-GGATGCCACTGACT
* * * * *
41546 TATGGGCTTTGGAAGGGTGCCATTGATT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
41574 TGTGTAAGCTTTGAAATGGTATGCCATTAACT
1 TGTG--GGCTTTGAAA-GG-ATGCCACTGACT
* *
41606 TGTGGGCTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
41634 TGTGGGCTTTGAAAGGATGCCGCTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
41662 TGTGGGCTTTAAAAGAATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
41690 TATGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
** *
41718 TGTGGGCTTTGAAAATATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
41746 TGTGGGCTTTAAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
41774 TGTGGTCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
*
41803 TGTGGTCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
*
41832 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
** *
41860 TGTAAGCTTTGAAAATG-TGCCACTGACT
1 TGTGGGCTTTG-AAAGGATGCCACTGACT
* **
41888 TATGGGCTTTGAAAATATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
41916 TCTAGGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
*
41945 TGTGAGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
41973 TATGGGCTTTCAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
42001 TATGGGCATTGAAAAGG-TGCCACTAACT
1 TGTGGGCTTTG-AAAGGATGCCACTGACT
* *
42029 TGTGGCCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
42057 TGTGGGCTTTAAAAGGATACCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* ** *
42085 TGTGGGCTTTGAAAGGGTGTTACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
42113 TGTGGGCTTTAAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
42141 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
42169 TGTGGGTTTTGAAAAGTTGCCA-TTACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
42196 TGTGGGCTTTTAAAGAGATGCCACTAACT
1 TGTGGGCTTTGAAAG-GATGCCACTGACT
* *
42225 TGTGGTCTTTCG-AAGAGATGTCACTGACT
1 TGTGGGCTTT-GAAAG-GATGCCACTGACT
*
42254 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
42282 TGTAGG-TTTTAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
42309 TGTGGGCTTTGAAAAGATGCCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
42337 T-TTGGCTTTTG-AAGAGATGCCA-TAGACT
1 TGTGGGC-TTTGAAAG-GATGCCACT-GACT
* *
42365 TATGGGCTTTGAAAGGATGCCACTCACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
42393 TATGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
42421 TGTGAGCTTTGAAAGCG-TGCCACTGACT
1 TGTGGGCTTTGAAAG-GATGCCACTGACT
* *
42449 TGTGGGCTTTGAAAAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
42477 TGTGGGCTTTAAAAAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
42505 TGTGGTCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
* *
42534 TGTGGTCTTTTG-AAGAGATGCCACTGAAT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
* * * *
42563 TGTGGGTTTTGAAAAGATGTCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
42591 TGTGGGCTTTGAAAGGGTGCCATTCATT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
42619 TATGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
42647 TATGGGTTTTG-AAGAAATGCCACTGACT
1 TGTGGGCTTTGAAAG-GATGCCACTGACT
* *
42675 TGTGGGCTTTGAAAAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
42703 TGTGGGCTTTGTAATGATACCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
42731 TGTGAGTTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
42759 TGTGGGCTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
42787 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
42815 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
42843 TATGGGCTTTGATAA-GATGCCACTAACT
1 TGTGGGCTTTGA-AAGGATGCCACTGACT
* *
42871 TG-GGGATTTTGAAAGGATACCACTGACT
1 TGTGGG-CTTTGAAAGGATGCCACTGACT
* *
42899 TATGGTCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
** * *
42928 TGTGTTCTTTTG-AAGAGATGCCACTAACC
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
* * *
42957 TGTGGGTTTTGAAAGGATGCCACTAACG
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
42985 TGTGGGCTTTAAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
43013 TGTGGGCTTTAAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
43041 TGTGGGCTTTGAAAAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
43069 TATGTGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
* * *
43098 TGTAGGCATTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
43126 TGTAGGCTTTGAAAGGGGTGCCACTAACT
1 TGTGGGCTTTGAAA-GGATGCCACTGACT
* * *
43155 TGT-GGTTTTCGAAAAGATGCCATTGACT
1 TGTGGGCTTT-GAAAGGATGCCACTGACT
* *
43183 TGTGGGCTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* ** *
43211 TGTGGTCTTCAAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
43239 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
43267 TGTGGGCTTTCATA-GAGTGCTACTGACT
1 TGTGGGCTTTGAAAGGA-TGCCACTGACT
*
43295 TGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
43323 TGTGGGTTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
43351 CGTGGGCTTTAAAAGGATGCCACTTACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
43379 TGTGGGCTTTCAAAGGGTGCCACTTACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
43407 TGTGGGCTTTGAAAAGAAGCCATTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
43435 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
43463 TGTGGGATTTAAAAGGGTACCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
43491 TGTGGGCTTTGGAAA-AATGCCACTAACT
1 TGTGGGCTTT-GAAAGGATGCCACTGACT
* *
43519 TGTGAGCTTTTG-AAGAGATGCAACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
* * *
43548 TGTAGGCTTTGAAAGGATGCTACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
43576 TGTAGGCTTTGAAAATG-TGTCACTGACT
1 TGTGGGCTTTG-AAAGGATGCCACTGACT
* * *
43604 CGTGGGCATTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
43632 TGTGGGCTTTTGAATA-GATGCCACAGACT
1 TGTGGGC-TTTGAA-AGGATGCCACTGACT
*
43661 TGTGAGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
43689 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
43717 TGTAGGCTTTGAAAAGATGCCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
43745 TGTGGGTTTTTG-AAGAGATGCCATTGACT
1 TGTGGG-CTTTGAAAG-GATGCCACTGACT
*
43774 TGTGAGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
43802 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
43830 TGTGGGCTTTGAAAAGG-TACCACTGACT
1 TGTGGGCTTTG-AAAGGATGCCACTGACT
43858 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
43886 TGTGGGCTTTAAAAGGATACCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *** *
43914 TGTAGGCTTTGAAAGGGTATTACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
43942 TGTGGGCTTTAAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
43970 TGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
43998 TGTGGGTTTTGAAAAGTTGCCA-TTACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
44025 TGTGGGCTTTTAAAGAGATGCCACTAACT
1 TGTGGGCTTTGAAAG-GATGCCACTGACT
*
44054 TGTGGTCTTTTGAACA-GATGCCACTGACT
1 TGTGGGC-TTTGAA-AGGATGCCACTGACT
*
44083 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
44111 TGTAGGC-CTG-AAGGGTGTCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
44137 TGTGGGCTTTAAAAAGG-TGCCATTGACT
1 TGTGGGCTTT-GAAAGGATGCCACTGACT
* * *
44165 TGTGGGTTTTTAAAGAGATGCCATTGACT
1 TGTGGGCTTTGAAAG-GATGCCACTGACT
* *** *
44194 TGTGGGCTTTGAAAGGGTATTACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
44222 TATGGGCTTTGAAAGGTTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
44250 TGT-GGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* **
44277 TGTGGGCTTTGAAAAGATGCCACAAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
44305 TGTGGGCTTTGAAAGGATGCCACT-ACC
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
44332 TGTGGTCTTTTG-AAGAAATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
* * *
44361 TGTGGTCTTTTGAAAAGATGCCACTAACT
1 TGTGGGC-TTTGAAAGGATGCCACTGACT
* *
44390 TGTGGTCTTTTG-AAGAGATGCCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
* * * *
44419 TGTGGGTTTTGAAAAGATGTCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
44447 TGTGGGTTTTGAAAGGGTGCCACTCATT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
44475 TATGGGCTTTGAAAAGATACGACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
44503 TGTGGGCTTTTG-AAGAGATGCCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
** * * *
44532 TGTTTGTTTTGAAAAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
44560 TGTGGGCTTTGAAAGGATACCACTCACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
44588 TGTGAGTTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
44616 TGTGGGCTTTAAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
44644 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
44672 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
44700 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
44728 TGTGGGCTTTGATAA-GATGCCACTGACT
1 TGTGGGCTTTGA-AAGGATGCCACTGACT
*
44756 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
44784 TAG-GGTCTTTTG-AAGAGATGCCACTGACT
1 T-GTGGGC-TTTGAAAG-GATGCCACTGACT
** *
44813 TGTGTTCTTTTGAATA-GATGCCACTAACT
1 TGTGGGC-TTTGAA-AGGATGCCACTGACT
* * * *
44842 TGTGTGATTTGAAAAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * * **
44870 TGTGCGCCTTAAAAGGGTGCTGCTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
44898 TGTGGGCTTTGAAATGATGGCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
44926 TGTAGGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
* *
44955 TGTGGGCTTTTG-AAGAGATGCCACTTACG
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
*
44984 TGTGGGCTTTGAAAGGATGCCCCTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
45012 TGTAGGCTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
** * * *
45040 TGTGGTATTCGAAAAGATGCCACTAAC-
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
45067 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
45095 TGTGGGCTTTGAAA-GAGTGCTACTGACT
1 TGTGGGCTTTGAAAGGA-TGCCACTGACT
*
45123 TGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
45151 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
45179 TATGGGCTTTGAAAGGATGCCACTTACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
45207 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * * * *
45235 TTTGGGCTTGGAAAAGAAGCCATTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
45263 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
45291 TGTGGGCTTT-AAAAGAGTACCATTGACT
1 TGTGGGCTTTGAAAGGA-TGCCACTGACT
* *
45319 TGTGGGCTTTGGAAA-AATGCCACTAACT
1 TGTGGGCTTT-GAAAGGATGCCACTGACT
*
45347 TGTGAGCTTTTG-AAGAGAT-CCA-TGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
*
45374 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
45402 TGTGGGCTTTGAAAGGGTGCTACTGACA
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*** ** * ** *
45430 TG-CCACTAACTTG-TGGGCTTTGAAAGAGTGCCAC-
1 TGTGGGCT---TTGAAAGG--ATG--CCACTG--ACT
* ** ** *
45464 TGACTTTGGGCTTTGAA--AAG--A-TGTCACT
1 TG---TGGGCTTTGAAAGGATGCCACTG--ACT
* * * *
45492 GACTTTGAGCTTTG-AA-GATGCCTCTAACT
1 ---TGTGGGCTTTGAAAGGATGCCACTGACT
* *
45521 TGTAGGCTTT-AAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
45548 TGTAGGCTTTGAAAAGATGCCATTTACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
45576 TGTGGGTTTTTG-AAGAGATGCCATTGACT
1 TGTGGG-CTTTGAAAG-GATGCCACTGACT
* *
45605 GTGTGAGCTTTGAAAGGATGCCACT-AAT
1 -TGTGGGCTTTGAAAGGATGCCACTGACT
45633 TGTGGGCTTTGAAAGGA-GCCCAC-GACT
1 TGTGGGCTTTGAAAGGATG-CCACTGACT
*
45660 TGT-GGCTTTGAAAAGG-TACCACTGACT
1 TGTGGGCTTTG-AAAGGATGCCACTGACT
45687 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
45715 T-TGGGCTTTAAAAGGA-GACCACTAACT
1 TGTGGGCTTTGAAAGGATG-CCACTGACT
* * * *
45742 TGTAGGCTTTGAAAGGGTAG-TACTAACT
1 TGTGGGCTTTGAAAGGAT-GCCACTGACT
*
45770 TGTGGGCTTT-AAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
45797 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
45825 GGTGGGTTTTGAAAAGTTGCCA-TTACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
45852 TGT-GGCTGTTTAAAGAATGCCACTAACT
1 TGTGGGCT-TTGAAAGGATGCCACTGACT
*
45880 TGTGGTCTTTTGAACA-GATGCCACTGGACT
1 TGTGGGC-TTTGAA-AGGATGCCACT-GACT
*
45910 TGTGGGCTTTGAAAGGACTGCCACTAACT
1 TGTGGGCTTTGAAAGGA-TGCCACTGACT
* * *
45939 TGTAGGCTTT-AAAGGGTGTCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
45966 TGTGGGCTTTAAAAGG-TGCCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
45993 TGTGGG-TTT-TAAGAGATG-CATTGACT
1 TGTGGGCTTTGAAAG-GATGCCACTGACT
* ** *
46019 TGTGGGCTTTGAAAAGA-GATACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
46046 T-TGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
46073 TGTGGGCTTTGAAAAGATTGCCACT-ACT
1 TGTGGGCTTTGAAAGGA-TGCCACTGACT
* *
46101 TGTGGGCTTTGAAAGGATGCCACTAACC
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
46129 TGTGGTCTTTTGAAGGACGAAATGCCACTGACT
1 TGTGGGC-TTTGAA--A-G-GATGCCACTGACT
* * *
46162 TG-GGTCTTTTGAAAAGATGCCACTAACT
1 TGTGGGC-TTTGAAAGGATGCCACTGACT
* * *
46190 TGTGGTCTTTTG-AAGACATGCCACTAAACT
1 TGTGGGC-TTTGAAAG-GATGCCACT-GACT
* * *
46220 TGT-GGTTTTGAAA-GATGTCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
46246 TGT-GGTTTTGAAAGGGTGCCACTCATT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
46273 TATGGGCTTTGAAAAGATACGACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
46301 TGTGGGCTTTTGAGA-GATGCCACTAAC-
1 TGTGGGC-TTTGAAAGGATGCCACTGACT
** * *
46328 TGTTTG-TTTGAAAAGAT-CCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
46354 TGTGGGCTTTG-AAGGATACCACTCACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
46381 TGTGAG-TTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
46408 TGTGGGCTTTAAAATGG-TGCCACTGACT
1 TGTGGGCTTTGAAA-GGATGCCACTGACT
*
46436 TGTGGGCTTTTGAAAGGATGCCACTAACT
1 TGTGGGC-TTTGAAAGGATGCCACTGACT
*
46465 TGTGGGCTTTGAAAGGGTGCCACTGAC-
1 TGTGGGCTTTGAAAGGATGCCACTGACT
46492 T-TGGGCTTTGATAA-GATGCCACTGACT
1 TGTGGGCTTTGA-AAGGATGCCACTGACT
*
46519 TGTGGGCTTTGAAAGGATG-CACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
46546 TAG-GGTCTTTG-AAGAGATGCCACTGACT
1 T-GTGGGCTTTGAAAG-GATGCCACTGACT
** *
46574 TGTGTTCTTTTGAATA-GATGCCACTAACT
1 TGTGGGC-TTTGAA-AGGATGCCACTGACT
* * * *
46603 TGTGTGATTTGAAAAGATGCCACTAAC-
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * * **
46630 TGTGCGCCTTAAAAGGGTGCTGCTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
46658 TGTGGGCTTTGAAATGATGGCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
46686 TGTAGGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
*
46715 TGTGGGCTTTTG-AAGAGATGCCACTTACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
*
46744 TGTGGGCTTTGAAAGGATGCCCCTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
46772 TGTAGGCTTTGAAAGGGTGCC-CTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
** * * *
46799 TGTGGTATTCGAAAAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
46827 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
46855 TGTGGGCTTTGAAAAG-TGCTACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
46882 TGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
46910 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
46938 TATGGGCTTTGAAAGGATGCCATTTACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
46966 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * * * *
46994 TTTGGGCTTGGAAAAGAAGCCATTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
47022 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
47050 TGTGGGCTTTAAAAGAGAGTACCATTGACT
1 TGTGGGCTTTGAAAG-GA-TGCCACTGACT
* *
47080 TGTGGGCTTTGGAAA-AATGCCACTAACT
1 TGTGGGCTTT-GAAAGGATGCCACTGACT
* *
47108 TGTGAGCTTTG-AAGAGATGCCATTGACT
1 TGTGGGCTTTGAAAG-GATGCCACTGACT
*
47136 TGTGGGC-TTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
47163 TGTGGGCTTTGAAAGGGTGCTACTGAC-
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * ** ** * ** *
47190 -AT-GCCACT-AACTTG-TGGCTTTGA-A
1 TGTGGGCTTTGAA-AGGATGCCACTGACT
* * * ** *** * ** **
47214 AGAGTGCCACTGACTTG-TGGGCTTTGAAA
1 TGTG-GGCTTTGAAAGGAT-GCCACTGACT
* ** ** ** ** * *
47243 AGATGTCACTGACTTGTGAGCTTTGAAAGGATGCCT
1 TG-TG-GGCT---TTGAAAG-GATGCCA--CTGACT
* * ** * *
47279 CTAACTTGTAGGCTTTAAAGGGTGCCACTGACT
1 -T---GTG-GGCTTTGAAAGGATGCCACTGACT
* * * *
47312 TGTAGGCTTTGAAAAGATGCCATTTACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
47340 TGTGGGTTTTTG-AAGAGATGCCATTGACT
1 TGTGGG-CTTTGAAAG-GATGCCACTGACT
* *
47369 TGTGAGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
47397 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
47425 TGTGGGCTTTGAAAAGG-TACCACTGACT
1 TGTGGGCTTTG-AAAGGATGCCACTGACT
47453 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
47481 TGTGGGCTTTAAAAGGATACCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *** *
47509 TGTAGGCTTTGAAAGGGTATTACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
47537 TGTGGGCTTTAAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
47565 T-TGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
47592 TGTGGGTTTTGAAAAGTTGCCA-TTACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
47619 TGTGGGCTTTTAAAGAGATGCCACTAACT
1 TGTGGGCTTTGAAAG-GATGCCACTGACT
*
47648 TGTGGTCTTTTGAACA-GATGCCACTGACT
1 TGTGGGC-TTTGAA-AGGATGCCACTGACT
*
47677 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
47705 TGTAGGCTTT-AAAGGGTGTCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
47732 TGTGGGCTTTAAAAAGG-TGCCATTGGACT
1 TGTGGGCTTT-GAAAGGATGCCACT-GACT
* * * *
47761 TGTGGGTTTTTAAAGAGATGTCATTGACT
1 TGTGGGCTTTGAAAG-GATGCCACTGACT
* *
47790 TGTGGGCTTTGAAAGAGTAT--TACTAACT
1 TGTGGGCTTTGAAAG-G-ATGCCACTGACT
* *
47818 TATGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
47846 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
47874 TGTGGGCTTTGAAAAGATGCCACTAAACT
1 TGTGGGCTTTGAAAGGATGCCACT-GACT
* *
47903 TGTGGGCTTTGAAAGGATGCCACTAACC
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
47931 TGTGGTCTTTTG-AAGAAATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
* *
47960 TGTGGTCTTTTGAAAAGATGCCACT-ACT
1 TGTGGGC-TTTGAAAGGATGCCACTGACT
* *
47988 TGTGGTCTTTTG-AAGAGATGCCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
* * * *
48017 TGTGGGTTTTGAAAAGATGTCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
48045 TGTGGGTTTTGAAATGG-TGCCACTCATT
1 TGTGGGCTTTGAAA-GGATGCCACTGACT
* * * *
48073 TATGGGCTTTGAAAAGATACGACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
48101 TGTGGGCTTTTG-AAGAGATGCCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
** *
48130 TGTTTG-TTTGAAA-GATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
48156 TGTGGGCTTTGAAAGGATACCACTCACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
48184 TGTGAG-TTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
48211 TGTGGGCTTT-AAATGG-TGCCACTGACT
1 TGTGGGCTTTGAAA-GGATGCCACTGACT
*
48238 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
48266 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
48294 TGTGGGCTTTGATAA-GATGCCACAGACT
1 TGTGGGCTTTGA-AAGGATGCCACTGACT
*
48322 TGTGGGC-TTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
48349 TAG-GGTCTTTTG-AAGAGATGCCACTGACT
1 T-GTGGGC-TTTGAAAG-GATGCCACTGACT
** *
48378 TGTGTTCTTTTGAATA-GATGCCACTAACT
1 TGTGGGC-TTTGAA-AGGATGCCACTGACT
* * * *
48407 TGTGTGATTTGAAAAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * * **
48435 TGTGCGCCTTAAAAGGGTGCTGCTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
48463 TGTGGGCTTTGAAATGATGGCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
48491 TGTAGGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
48520 TGTGGGCTTT
1 TGTGGGCTTT
48530 TGAAGAGATA
Statistics
Matches: 5814, Mismatches: 943, Indels: 568
0.79 0.13 0.08
Matches are distributed among these distances:
24 7 0.00
25 21 0.00
26 166 0.03
27 719 0.12
28 3626 0.62
29 1074 0.18
30 118 0.02
31 15 0.00
32 27 0.00
33 21 0.00
34 3 0.00
35 8 0.00
36 6 0.00
39 3 0.00
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (28 bp):
TGTGGGCTTTGAAAGGATGCCACTGACT
Found at i:45444 original size:39 final size:39
Alignment explanation
Indices: 45390--45467 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
45380 CTTTGAAAGG
* *
45390 ATGCCACTAACTTGTGGGCTTTGAAAGGGTGCTACTGAC
1 ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
45429 ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
1 ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
45468 TTTGGGCTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (39 bp):
ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
Found at i:47226 original size:38 final size:39
Alignment explanation
Indices: 47151--47227 Score: 129
Period size: 38 Copynumber: 2.0 Consensus size: 39
47141 GCTTGAAAGG
* *
47151 ATGCCACTAACTTGTGGGCTTTGAAAGGGTGCTACTGAC
1 ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
47190 ATGCCACTAACTTGT-GGCTTTGAAAGAGTGCCACTGAC
1 ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
47228 TTGTGGGCTT
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
38 21 0.58
39 15 0.42
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (39 bp):
ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
Found at i:47254 original size:66 final size:66
Alignment explanation
Indices: 47124--47255 Score: 171
Period size: 66 Copynumber: 2.0 Consensus size: 66
47114 CTTTGAAGAG
* * * *
47124 ATGCCATTGACTTGTGGGCTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGGTGCTACTGA
1 ATGCCACTAACTTGTGGGCTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAAGATGCTACTGA
47189 C
66 C
*
47190 ATGCCACTAACTTGT-GGCTTTGAAA-GAGTGCCACTGACTTGTGGGCTTTGAAAAGATG-TCAC
1 ATGCCACTAACTTGTGGGC-TTGAAAGGA-TGCCACTAACTTGTGGGCTTTGAAAAGATGCT-AC
47252 TGAC
63 TGAC
47256 TTGTGAGCTT
Statistics
Matches: 58, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
65 6 0.10
66 52 0.90
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (66 bp):
ATGCCACTAACTTGTGGGCTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAAGATGCTACTGA
C
Found at i:48661 original size:27 final size:27
Alignment explanation
Indices: 48614--49463 Score: 127
Period size: 27 Copynumber: 30.4 Consensus size: 27
48604 GTAGCACCCT
*
48614 TTTCAAAAGCCCACAAGTCAGTGGCATCC
1 TTTC-AAAG-CCAAAAGTCAGTGGCATCC
**
48643 TTTCAAAGCCAAAAGTCAGTGGCATTAT
1 TTTCAAAGCCAAAAGTCAGTGGCA-TCC
* * *
48671 TCTTCAATACGCTCACAAGT-AGTAGCAT-T
1 T-TTCAA-A-GC-CAAAAGTCAGTGGCATCC
* * * * * *
48700 TTTCCAATGCCCCACAGTCAATGGTACCC
1 TTT-CAAAG-CCAAAAGTCAGTGGCATCC
* * * * *
48729 TTTTAAAGCCCAACGTTAGTGGCTTCC
1 TTTCAAAGCCAAAAGTCAGTGGCATCC
* * * * *
48756 -TTCAAAAGCCACAAGTTAATGGCTTCT
1 TTTC-AAAGCCAAAAGTCAGTGGCATCC
* *
48783 TTTCAAAGCCCACAAACTC-GTGGCACCC
1 TTTCAAAG-CCA-AAAGTCAGTGGCATCC
* * * *
48811 TTTCAAAGCCCACTAAGTTAATGGCATCG
1 TTTCAAAG-CCA-AAAGTCAGTGGCATCC
*
48840 TTTCAAAGGCCACACATGTC-GATGGCAT-C
1 TTTCAAA-GCCA-A-AAGTCAG-TGGCATCC
* * * * *
48869 TTTCAAAAACCCAAATTCACTGGCATCT
1 TTTC-AAAGCCAAAAGTCAGTGGCATCC
* *
48897 TTTCAAAGACTACAAGT-AGTGGCA-CC
1 TTTCAAAG-CCAAAAGTCAGTGGCATCC
* * *
48923 TTT-AAAGCCTTAAAGTTAGAGG-ATCC
1 TTTCAAAGCC-AAAAGTCAGTGGCATCC
*** * **
48949 TTTCAAAAAGCCCCCAGTCAGTGACATAT
1 TTTC--AAAGCCAAAAGTCAGTGGCATCC
*
48978 TTTCAAAGCCCAAAGTCAGTGGCA-CTC
1 TTTCAAAGCCAAAAGTCAGTGGCATC-C
*
49005 TTTCAAAGCCCACAATTTAGTGGCA-TGTCAGTAGCCC
1 TTTCAAAG-CCA-AA---AGT--CAGTGGCA-T---CC
* * *
49042 CTTCAAAGCCCACAGTCAGTGGCATCC
1 TTTCAAAGCCAAAAGTCAGTGGCATCC
* *
49069 -TTCAAAGCCCACAAGTCAAT-GCATCTC
1 TTTCAAAG-CCAAAAGTCAGTGGCATC-C
* * * * * *
49096 ATTCAAAAGCTCACAATTTAGTGGGCCT-T
1 TTTC-AAAGC-CAAAAGTCAGT-GGCATCC
* * *
49125 TTTCCAAAGCCCAACAAGTCA-CGGTACCC
1 TTT-CAAAG-CCAA-AAGTCAGTGGCATCC
* * *
49154 TTT-TAAGCCCAAAAGTTAGTTG-ATCC
1 TTTCAAAG-CCAAAAGTCAGTGGCATCC
* * * * *
49180 TTTCAAACGCCCACAAGTTTAATGGCTTCT
1 TTTCAAA-G-CCAAAAG-TCAGTGGCATCC
* *
49210 TTTCCAAGCC-AAAGTC-GTGGCACCC
1 TTTCAAAGCCAAAAGTCAGTGGCATCC
* * *
49235 TTTCAAAGCCCAAAGTAAGTGGC-CCTC
1 TTTCAAAGCCAAAAGTCAGTGGCATC-C
* * *
49262 TTTCAAAGCCCATAAGTTAGTGGAATCC
1 TTTCAAAG-CCAAAAGTCAGTGGCATCC
* * *
49290 TTTC-ACGCCCACATAGTCATTGGCAT-C
1 TTTCAAAG-CCA-AAAGTCAGTGGCATCC
* * *
49317 -TTCAAAAGCCCCACAAGTCCGTCGCA-CTC
1 TTTC-AAAG--CCAAAAGTCAGTGGCATC-C
* *
49346 TTTCAAAGCCACAAGTTAGTGGGCAT-C
1 TTTCAAAGCCAAAAGTCAGT-GGCATCC
* * *
49373 TTTCAAAGCCACAAGTTAGTGGCATCT
1 TTTCAAAGCCAAAAGTCAGTGGCATCC
*
49400 TTTCGAATA-CCAAAAGTTAGTGGCA-CC
1 TTTC-AA-AGCCAAAAGTCAGTGGCATCC
* * * * * *
49427 CTTCACAGCTACAATTCAGGGGCATCC
1 TTTCAAAGCCAAAAGTCAGTGGCATCC
49454 TTTCAAAGCC
1 TTTCAAAGCC
49464 CCCAAGTAAG
Statistics
Matches: 590, Mismatches: 154, Indels: 156
0.66 0.17 0.17
Matches are distributed among these distances:
24 1 0.00
25 24 0.04
26 66 0.11
27 191 0.32
28 131 0.22
29 97 0.16
30 35 0.06
31 15 0.03
32 12 0.02
33 4 0.01
34 2 0.00
35 1 0.00
36 2 0.00
37 8 0.01
38 1 0.00
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
TTTCAAAGCCAAAAGTCAGTGGCATCC
Found at i:49060 original size:25 final size:27
Alignment explanation
Indices: 49031--49086 Score: 80
Period size: 26 Copynumber: 2.1 Consensus size: 27
49021 TTAGTGGCAT
49031 GTCAGTAGC-CCCTTCAAAGCCCAC-A
1 GTCAGTAGCACCCTTCAAAGCCCACAA
* *
49056 GTCAGTGGCATCCTTCAAAGCCCACAA
1 GTCAGTAGCACCCTTCAAAGCCCACAA
49083 GTCA
1 GTCA
49087 ATGCATCTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 8 0.30
26 14 0.52
27 5 0.19
ACGTcount: A:0.29, C:0.36, G:0.18, T:0.18
Consensus pattern (27 bp):
GTCAGTAGCACCCTTCAAAGCCCACAA
Found at i:49292 original size:55 final size:55
Alignment explanation
Indices: 49158--49302 Score: 126
Period size: 55 Copynumber: 2.7 Consensus size: 55
49148 GTACCCTTTT
* * *
49158 AAGCCCAAAAGTTAGTTGATCCTTTCAAACGCCCACAAGTTTAATGGCTTCTTTTCC
1 AAGCCC-AAAGTTAGTGGATCCTTTCAAACGCCCACAAG-TTAATGGCCTCTTTTCA
* *
49215 AAG-CCAAAG-TCGTGGCACCCTTTCAAA-GCCCA-AAG-TAAGTGGCC-CTCTTTCA
1 AAGCCCAAAGTTAGTGG-ATCCTTTCAAACGCCCACAAGTTAA-TGGCCTCT-TTTCA
49267 AAGCCCATAAGTTAGTGGAATCCTTTC--ACGCCCACA
1 AAGCCCA-AAGTTAGTGG-ATCCTTTCAAACGCCCACA
49303 TAGTCATTGG
Statistics
Matches: 72, Mismatches: 8, Indels: 18
0.73 0.08 0.18
Matches are distributed among these distances:
51 5 0.07
52 11 0.15
53 7 0.10
54 17 0.24
55 27 0.38
56 2 0.03
57 3 0.04
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.26
Consensus pattern (55 bp):
AAGCCCAAAGTTAGTGGATCCTTTCAAACGCCCACAAGTTAATGGCCTCTTTTCA
Found at i:49421 original size:28 final size:26
Alignment explanation
Indices: 49162--49424 Score: 115
Period size: 28 Copynumber: 9.6 Consensus size: 26
49152 CCTTTTAAGC
*
49162 CCAAAAGTTAGTTG-ATCCTTTCAAACG
1 CCAAAAGTTAGTGGCAT-CTTTCAAA-G
* * * *
49189 CCCACAAGTTTAATGGCTTCTTTTCCAAG
1 -CCAAAAG-TTAGTGGCATC-TTTCAAAG
* *
49218 CC-AAAG-TCGTGGCACCCTTTCAAAG
1 CCAAAAGTTAGTGGCA-TCTTTCAAAG
* * *
49243 CCCAAAGTAAGTGGCCCTCTTTCAAAG
1 CCAAAAGTTAGTGG-CATCTTTCAAAG
* * *
49270 CCCATAAGTTAGTGGAATCCTTTC-ACG
1 -CCAAAAGTTAGTGGCAT-CTTTCAAAG
* * *
49297 CCCACATAGTCATTGGCATC-TTCAAAAG
1 -CCA-AAAGTTAGTGGCATCTTTC-AAAG
* ** *
49325 CCCCACAAGTCCGTCGCACTCTTTCAAAG
1 --CCAAAAGTTAGTGGCA-TCTTTCAAAG
*
49354 CCACAAGTTAGTGGGCATCTTTCAAAG
1 CCAAAAGTTAGT-GGCATCTTTCAAAG
*
49381 CCACAAGTTAGTGGCATCTTTTCGAATA-
1 CCAAAAGTTAGTGGCATC-TTTC-AA-AG
49409 CCAAAAGTTAGTGGCA
1 CCAAAAGTTAGTGGCA
49425 CCCTTCACAG
Statistics
Matches: 180, Mismatches: 36, Indels: 38
0.71 0.14 0.15
Matches are distributed among these distances:
25 14 0.08
26 14 0.08
27 60 0.33
28 64 0.36
29 18 0.10
30 10 0.06
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.26
Consensus pattern (26 bp):
CCAAAAGTTAGTGGCATCTTTCAAAG
Found at i:49479 original size:28 final size:27
Alignment explanation
Indices: 49166--49479 Score: 159
Period size: 27 Copynumber: 11.5 Consensus size: 27
49156 TTAAGCCCAA
*
49166 AAGTTAGTTG-ATCCTTTCAAACGCCCAC
1 AAGTTAGTGGCATCCTTTCAAA-G-CCAC
* * * *
49194 AAGTTTAATGGCTTCTTTTCCAAGCCA-
1 AAG-TTAGTGGCATCCTTTCAAAGCCAC
* *
49221 AAG-TCGTGGCACCCTTTCAAAGCC-C
1 AAGTTAGTGGCATCCTTTCAAAGCCAC
* * *
49246 AAAGTAAGTGGC-CCTCTTTCAAAGCCCAT
1 -AAGTTAGTGGCATC-CTTTCAAAG-CCAC
* *
49275 AAGTTAGTGGAATCCTTTC-ACGCCCAC
1 AAGTTAGTGGCATCCTTTCAAAG-CCAC
* *
49302 ATAGTCATTGGCAT-C-TTCAAAAGCCCCAC
1 A-AGTTAGTGGCATCCTTTC-AAAG--CCAC
** *
49331 AAGTCCGTCGCA-CTCTTTCAAAGCCAC
1 AAGTTAGTGGCATC-CTTTCAAAGCCAC
49358 AAGTTAGTGGGCAT-CTTTCAAAGCCAC
1 AAGTTAGT-GGCATCCTTTCAAAGCCAC
* *
49385 AAGTTAGTGGCATCTTTTCGAATA-CCAA
1 AAGTTAGTGGCATCCTTTC-AA-AGCCAC
* * *
49413 AAGTTAGTGGCA-CCCTTCACAGCTAC
1 AAGTTAGTGGCATCCTTTCAAAGCCAC
* *
49439 AA-TTCAGGGGCATCCTTTCAAAGCCCCC
1 AAGTT-AGTGGCATCCTTTCAAAG-CCAC
*
49467 AAGTAAGTGGCAT
1 AAGTTAGTGGCAT
49480 T
Statistics
Matches: 217, Mismatches: 43, Indels: 52
0.70 0.14 0.17
Matches are distributed among these distances:
25 18 0.08
26 24 0.11
27 72 0.33
28 72 0.33
29 20 0.09
30 11 0.05
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (27 bp):
AAGTTAGTGGCATCCTTTCAAAGCCAC
Done.