genome.fa.s2676.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2676
Parameters: 2 7 7 80 10 50 1000
Length:  55639

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115--153	18	2.1	18	85	4	51	2	15	0	82	0.79
1631--1696	29	2.2	29	84	10	89	45	0	1	53	1.09
2486--2512	11	2.5	11	100	0	54	40	0	0	59	0.98
3509--3546	2	19.0	2	100	0	76	50	0	0	50	1.00
4336--4432	36	2.6	36	82	11	124	40	1	1	57	1.12
4416--4466	15	3.3	15	75	20	52	39	0	0	60	0.97
4648--4749	34	3.3	32	79	12	115	45	1	0	51	1.19
4965--4995	16	1.9	16	93	0	53	25	9	9	54	1.63
5425--5458	18	1.9	18	88	5	52	32	2	8	55	1.45
6140--6262	38	3.1	40	75	12	103	58	0	1	39	1.14
8358--8392	3	11.7	3	100	0	70	31	34	34	0	1.58
10905--10935	10	3.1	10	90	0	53	58	0	0	41	0.98
13699--13730	3	10.7	3	93	0	55	3	31	31	34	1.73
13856--13900	5	9.4	5	81	18	60	77	0	0	22	0.76
13858--13900	19	2.3	18	92	4	68	79	0	0	20	0.74
13894--13931	20	1.9	20	84	10	51	42	0	0	57	0.98
13896--13945	19	2.6	19	81	6	57	42	0	0	58	0.98
17857--17887	2	15.5	2	100	0	62	48	0	51	0	1.00
19059--19090	6	5.3	6	92	0	55	62	3	0	34	1.11
21755--21922	78	2.1	79	87	1	239	32	13	25	28	1.94
21748--21974	78	2.9	78	78	4	233	30	14	26	27	1.95
21907--22058	51	3.0	51	81	5	148	32	11	26	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24332--24406	20	3.8	19	84	7	96	44	13	14	28	1.83
24971--25072	41	2.5	41	79	7	109	46	9	24	19	1.80
25100--25177	40	2.0	40	87	2	113	42	11	23	23	1.86
25155--25261	45	2.6	42	82	10	123	31	14	30	23	1.94
25243--25417	61	2.9	61	90	3	280	29	20	24	25	1.99
25237--25445	61	3.6	56	79	15	233	30	20	24	24	1.99
25423--25468	23	2.0	23	95	0	83	26	23	26	23	2.00
25446--25805	121	2.9	122	91	3	562	30	18	25	25	1.98
25446--25805	61	5.9	61	91	2	544	30	18	25	25	1.98
25894--26176	117	2.4	118	85	4	363	28	19	26	25	1.98
25846--26182	62	5.7	61	84	4	376	26	18	27	27	1.99
25569--26069	266	1.8	270	85	7	712	27	19	26	25	1.99
26142--26225	43	2.0	43	90	0	132	16	23	28	30	1.96
26086--26280	104	1.9	104	83	0	255	23	20	27	28	1.99
26182--26329	61	2.4	61	80	3	174	27	19	27	25	1.99
26018--26324	165	1.9	166	84	0	418	26	19	27	27	1.99
33569--33634	20	3.7	19	73	26	72	39	10	16	33	1.83
33586--33612	13	2.1	13	100	0	54	40	7	14	37	1.74
33569--33632	33	1.9	33	96	0	119	39	9	17	34	1.82
34235--34309	20	3.8	20	80	3	89	28	14	13	44	1.83
36604--36772	51	3.3	50	80	4	169	27	24	14	33	1.94
36845--36912	28	2.4	28	80	4	84	22	32	19	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36896--37013	51	2.3	51	85	5	150	32	26	9	32	1.88
36946--37168	81	2.8	78	83	6	286	29	23	12	34	1.92
50633--50962	61	5.6	59	85	7	381	25	25	20	28	1.99
50927--51079	42	3.5	42	81	6	189	22	25	14	37	1.92
51681--51735	20	2.8	20	86	5	76	25	14	16	43	1.86
51718--51748	13	2.4	13	100	0	62	29	16	16	38	1.90
51698--51767	33	2.1	33	91	0	113	28	15	12	42	1.84
53313--53478	51	3.3	50	80	5	172	28	24	13	33	1.94
53604--53719	51	2.3	51	85	8	148	32	26	9	31	1.88
53657--53873	79	2.7	79	85	2	303	30	24	11	33	1.90
54536--54719	35	5.4	35	88	4	286	45	5	30	18	1.73
54522--54719	67	2.9	67	92	3	319	47	5	28	17	1.70

Tables:   1

The End!