Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2678
Parameters: 2 7 7 80 10 50 1000
Length:  95644

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4263--4398
34
4.0
34
98
0
254
20
0
38
41
1.53
4365--4420
22
2.5
22
91
0
85
21
1
39
37
1.64
4338--4449
56
2.0
56
94
0
197
21
0
39
38
1.60
4266--4449
68
2.9
66
85
9
199
21
0
38
40
1.57
9066--9167
52
2.0
52
82
3
125
36
5
12
45
1.67
9140--9202
26
2.4
26
89
0
90
20
3
17
58
1.52
9926--9971
17
2.8
16
87
6
58
32
17
6
43
1.75
10132--10177
21
2.2
21
85
11
60
32
13
2
52
1.52
10621--10712
46
2.0
46
87
4
132
32
13
17
36
1.88
23650--23698
21
2.2
21
82
13
55
61
0
2
36
1.08
23668--23701
11
3.2
11
87
4
52
61
0
0
38
0.96
29770--29829
30
1.9
30
86
6
84
36
11
20
31
1.88
35332--35387
16
3.6
16
72
13
53
58
0
3
37
1.15
43708--43809
52
2.0
52
84
3
134
36
5
13
44
1.69
43782--43844
26
2.4
26
89
0
90
20
3
17
58
1.52
44569--44614
17
2.8
16
87
6
58
32
17
6
43
1.75
44775--44820
21
2.2
21
85
11
60
32
13
2
52
1.52
45264--45355
46
2.0
46
87
4
132
32
13
17
36
1.88
58314--58362
21
2.2
21
82
13
55
61
0
2
36
1.08
58332--58365
11
3.2
11
87
4
52
61
0
0
38
0.96
64438--64497
30
1.9
30
86
6
84
36
11
20
31
1.88
69999--70054
16
3.6
16
72
13
53
58
0
3
37
1.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
76987--77024
10
3.9
10
93
3
60
60
5
0
34
1.19
77842--77876
11
3.3
11
88
4
54
17
2
0
80
0.84
78630--78667
11
3.2
12
85
14
51
44
0
2
52
1.14
78867--78896
2
15.0
2
100
0
60
50
0
0
50
1.00
82571--82618
22
2.1
23
85
14
64
43
0
0
56
0.99
82947--83002
16
3.6
16
72
13
53
58
0
3
37
1.15
90387--90522
34
4.0
34
97
0
254
19
0
38
41
1.52
90428--90544
22
5.2
22
71
15
87
20
0
40
39
1.53
90462--90573
56
2.0
54
98
0
179
20
0
40
39
1.53
91919--92007
35
2.8
30
82
14
92
42
38
1
17
1.57

Tables:   1

The End!