Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold268

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 336603
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33


File 3 of 3

Found at i:336547 original size:13 final size:13

Alignment explanation


    Indices: 336529--336553  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

     336519 CAAAGATCAG

                         
     336529 TGTATCGATACAA
          1 TGTATCGATACAA

                        
     336542 TGTATCGATACA
          1 TGTATCGATACA

     336554 TTTGAGTAAT


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32


Consensus pattern (13 bp):   
TGTATCGATACAA

Done.