Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2681
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 141227
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 1 of 2
Found at i:164 original size:49 final size:47
Alignment explanation
Indices: 24--431 Score: 278
Period size: 49 Copynumber: 9.0 Consensus size: 47
14 ATACAAGCCT
* *
24 GCGACATTGGTACTTAAAGATAAAGGTACCAATATGCTGATTCAAGGCCA
1 GCGACTTTGGT-CTTAAAGA-AAA-GTGCCAATATGCTGATTCAAGGCCA
* *
74 GCGA-TATTGGACTTAAAG----GTGCCAATGTGCTGATTCAAGGCCA
1 GCGACT-TTGGTCTTAAAGAAAAGTGCCAATATGCTGATTCAAGGCCA
117 GCGACTTTGGTCTTAAAGACAAATGTGCCAATATGCTGATTCAAGGCCA
1 GCGACTTTGGTCTTAAAGA-AAA-GTGCCAATATGCTGATTCAAGGCCA
* *
166 GCGA-TATTGGACTTAAAG----GTGCCAATGTGCTGATTCAAGGCCA
1 GCGACT-TTGGTCTTAAAGAAAAGTGCCAATATGCTGATTCAAGGCCA
* * *
209 GCGACATTGGTTTTAAAGATAAAGATGCTAATATGCTGATTCAAGGCCA
1 GCGACTTTGGTCTTAAAGA-AAAG-TGCCAATATGCTGATTCAAGGCCA
* * * *
258 GC-AATATTGGGCTT--------GTGCCGATGTGCTGATTCAAGGCCA
1 GCGACT-TTGGTCTTAAAGAAAAGTGCCAATATGCTGATTCAAGGCCA
** * *
297 GCGACACTAGTCTTAAAGATAAAGATGCCAATATGCTGATTCGAGGCCA
1 GCGACTTTGGTCTTAAAGA-AAAG-TGCCAATATGCTGATTCAAGGCCA
* * * * *
346 GC-AATATTGGGCTT--------GTGCCGATGTGCTGATTCAAGGCTA
1 GCGACT-TTGGTCTTAAAGAAAAGTGCCAATATGCTGATTCAAGGCCA
*
385 GCGACATTGGTCTTAAAGATAAAGATGCCAATATGCTGATTCAAGGC
1 GCGACTTTGGTCTTAAAGA-AAAG-TGCCAATATGCTGATTCAAGGC
432 TAGCAATATT
Statistics
Matches: 276, Mismatches: 42, Indels: 81
0.69 0.11 0.20
Matches are distributed among these distances:
39 57 0.21
40 4 0.01
43 76 0.28
44 1 0.00
48 6 0.02
49 124 0.45
50 8 0.03
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.26
Consensus pattern (47 bp):
GCGACTTTGGTCTTAAAGAAAAGTGCCAATATGCTGATTCAAGGCCA
Found at i:296 original size:39 final size:39
Alignment explanation
Indices: 242--474 Score: 133
Period size: 39 Copynumber: 5.5 Consensus size: 39
232 GATGCTAATA
242 TGCTGATTCAAGGCCAGCAATATTGGGCTTGTGCCGATG
1 TGCTGATTCAAGGCCAGCAATATTGGGCTTGTGCCGATG
** * * * *
281 TGCTGATTCAAGGCCAGCGACACTAGTCTTAAAGATAAAGATGCCAATA
1 TGCTGATTCAAGGCCAGC-A-A-TA---TT-GGGCT--TG-TGCCGATG
*
330 TGCTGATTCGAGGCCAGCAATATTGGGCTTGTGCCGATG
1 TGCTGATTCAAGGCCAGCAATATTGGGCTTGTGCCGATG
* * * * * *
369 TGCTGATTCAAGGCTAGCGACATTGGTCTTAAAGATAAAGATGCCAATA
1 TGCTGATTCAAGGCCAGCAATATTGGGC-T-----T---G-TGCCGATG
* * *
418 TGCTGATTCAAGGCTAGCAATATTGGACTCGTGCCGATG
1 TGCTGATTCAAGGCCAGCAATATTGGGCTTGTGCCGATG
*
457 TGCTAATTCAAGGCCAGC
1 TGCTGATTCAAGGCCAGC
475 GACATTGGTC
Statistics
Matches: 146, Mismatches: 28, Indels: 40
0.68 0.13 0.19
Matches are distributed among these distances:
39 69 0.47
40 4 0.03
41 1 0.01
42 4 0.03
43 2 0.01
45 3 0.02
46 4 0.03
47 1 0.01
48 4 0.03
49 54 0.37
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.26
Consensus pattern (39 bp):
TGCTGATTCAAGGCCAGCAATATTGGGCTTGTGCCGATG
Found at i:314 original size:88 final size:88
Alignment explanation
Indices: 24--487 Score: 660
Period size: 88 Copynumber: 5.2 Consensus size: 88
14 ATACAAGCCT
* * *
24 GCGACATTGGTACTTAAAGATAAAGGTACCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
1 GCGACATTGGT-CTTAAAGATAAAGATGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTT-
*
89 AAGGTGCCAATGTGCTGATTCAAGGCCA
64 ---GTGCCGATGTGCTGATTCAAGGCCA
* * *
117 GCGACTTTGGTCTTAAAGACAAATG-TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
1 GCGACATTGGTCTTAAAGATAAA-GATGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTT-
*
181 AAGGTGCCAATGTGCTGATTCAAGGCCA
64 ---GTGCCGATGTGCTGATTCAAGGCCA
* * *
209 GCGACATTGGTTTTAAAGATAAAGATGCTAATATGCTGATTCAAGGCCAGCAATATTGGGCTTGT
1 GCGACATTGGTCTTAAAGATAAAGATGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTGT
274 GCCGATGTGCTGATTCAAGGCCA
66 GCCGATGTGCTGATTCAAGGCCA
* * * *
297 GCGACACTAGTCTTAAAGATAAAGATGCCAATATGCTGATTCGAGGCCAGCAATATTGGGCTTGT
1 GCGACATTGGTCTTAAAGATAAAGATGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTGT
*
362 GCCGATGTGCTGATTCAAGGCTA
66 GCCGATGTGCTGATTCAAGGCCA
* *
385 GCGACATTGGTCTTAAAGATAAAGATGCCAATATGCTGATTCAAGGCTAGCAATATTGGACTCGT
1 GCGACATTGGTCTTAAAGATAAAGATGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTGT
*
450 GCCGATGTGCTAATTCAAGGCCA
66 GCCGATGTGCTGATTCAAGGCCA
473 GCGACATTGGTCTTA
1 GCGACATTGGTCTTA
488 GAAGGGTTGC
Statistics
Matches: 345, Mismatches: 24, Indels: 9
0.91 0.06 0.02
Matches are distributed among these distances:
88 201 0.58
91 1 0.00
92 132 0.38
93 11 0.03
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.27
Consensus pattern (88 bp):
GCGACATTGGTCTTAAAGATAAAGATGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTGT
GCCGATGTGCTGATTCAAGGCCA
Found at i:529 original size:33 final size:33
Alignment explanation
Indices: 487--553 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
477 CATTGGTCTT
487 AGAAGGGTTGCCACCGACTTGTGTGGGCGTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCGTTAG
* *
520 AGAATGGTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCGTTAG
553 A
1 A
554 AGGGGGTGCC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.19, C:0.18, G:0.36, T:0.27
Consensus pattern (33 bp):
AGAAGGGTTGCCACCGACTTGTGTGGGCGTTAG
Found at i:628 original size:61 final size:59
Alignment explanation
Indices: 557--734 Score: 199
Period size: 61 Copynumber: 3.0 Consensus size: 59
547 CTTTAGAAGG
* *
557 GGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAAAGTGCCACGGAGTTGTGGGCTTAAAA
1 GGGTGCCACGGAGTTGTGGGCTTAAAA--AGAAAAAGTGCCACGGAGTTGTGGGCTTAAAA
*
618 GGGTGCCACGGAGTTGTGGGCTTAAAATG-----GTGCCACGG-GTTG-GGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGGCTTAAAAAGAAAAAGTGCCACGGAGTTGTGGG-CTTAAAA
* * *
671 GGGTGCCGCGGAGTTGTGGGCTTTTAAAAAGAAAAAGGTGCCACGGAGTGGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGGC--TTAAAAAGAAAAA-GTGCCACGGAGTTGTGGGCTTAAAA
733 GG
1 GG
735 AAAAATATGC
Statistics
Matches: 99, Mismatches: 7, Indels: 21
0.78 0.06 0.17
Matches are distributed among these distances:
52 3 0.03
53 31 0.31
54 9 0.09
55 7 0.07
61 35 0.35
62 12 0.12
63 2 0.02
ACGTcount: A:0.28, C:0.13, G:0.38, T:0.21
Consensus pattern (59 bp):
GGGTGCCACGGAGTTGTGGGCTTAAAAAGAAAAAGTGCCACGGAGTTGTGGGCTTAAAA
Found at i:667 original size:26 final size:27
Alignment explanation
Indices: 593--693 Score: 161
Period size: 27 Copynumber: 3.8 Consensus size: 27
583 AGGAAAAAAA
593 GTGCCACGGAGTTGTGGGCTTAAAAGG
1 GTGCCACGGAGTTGTGGGCTTAAAAGG
*
620 GTGCCACGGAGTTGTGGGCTTAAAATG
1 GTGCCACGGAGTTGTGGGCTTAAAAGG
647 GTGCCACGG-GTTG-GGGACTTAAAAGG
1 GTGCCACGGAGTTGTGGG-CTTAAAAGG
*
673 GTGCCGCGGAGTTGTGGGCTT
1 GTGCCACGGAGTTGTGGGCTT
694 TTAAAAAGAA
Statistics
Matches: 68, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
25 3 0.04
26 20 0.29
27 42 0.62
28 3 0.04
ACGTcount: A:0.19, C:0.16, G:0.42, T:0.24
Consensus pattern (27 bp):
GTGCCACGGAGTTGTGGGCTTAAAAGG
Found at i:1047 original size:95 final size:93
Alignment explanation
Indices: 783--1216 Score: 545
Period size: 95 Copynumber: 4.6 Consensus size: 93
773 AGGTGCTACA
* * *
783 GAGTCGTGGACTTTG-GGAAGAGATTGCCACTGAGTCGTGGACTTGGAAGAAAAGGATGCCACTG
1 GAGTCGTGGACTTTGAAGAAAAGA-TGCCACTGAGTCGTGGACTTTGAAGAAAA-GATGCCACTG
* * * *
847 AGTCGTGAACTTTG-GGAAGAGATTGCTACT
64 AGTCGTGGACTTTGAAGAAAAGA-TGCCACT
* * *
877 GAGTCGTGCATTTTTGAAGAAAAAGGATGCCACTGAGTGGTGGACTTTGAAGAAAAGATGCCACT
1 GAGTCGTGGA-CTTTGAAG-AAAA-GATGCCACTGAGTCGTGGACTTTGAAGAAAAGATGCCACT
942 GAGTCGTGGACTTTGAAGAAAAGATGCCACT
63 GAGTCGTGGACTTTGAAGAAAAGATGCCACT
* *
973 -ATGTCGTGGACTTTAAAGAAAAGATGCCACTGAGTCGTGGACTTTGGGGAA-AAAAGACGCCAC
1 GA-GTCGTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTT---GAAGAAAAGATGCCAC
* * *
1036 TGAGTCATGGACTTGGAAGACAAGATGCCACT
62 TGAGTCGTGGACTTTGAAGAAAAGATGCCACT
* * *
1068 GAGTCATGGACTTGGAAGAAAAGATGCCACTGAGTCATGGACTTTGAAGAAAAGATGCCACTGAG
1 GAGTCGTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTTGAAGAAAAGATGCCACTGAG
*
1133 TTGTGGACTTTGAAGAAAAAAGATGCCACT
66 TCGTGGACTTTGAAG--AAAAGATGCCACT
*
1163 GAGTCGTGGACTTGGAAGAAAAGATGCCACTGAGTCGTGGAC-TTGAAGAAAAGA
1 GAGTCGTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTTGAAGAAAAGA
1217 GATTTGACGA
Statistics
Matches: 298, Mismatches: 29, Indels: 26
0.84 0.08 0.07
Matches are distributed among these distances:
92 3 0.01
93 49 0.16
94 25 0.08
95 142 0.48
96 41 0.14
97 36 0.12
98 2 0.01
ACGTcount: A:0.32, C:0.15, G:0.30, T:0.22
Consensus pattern (93 bp):
GAGTCGTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTTGAAGAAAAGATGCCACTGAG
TCGTGGACTTTGAAGAAAAGATGCCACT
Found at i:1065 original size:126 final size:125
Alignment explanation
Indices: 769--1216 Score: 589
Period size: 126 Copynumber: 3.6 Consensus size: 125
759 ATTTGCAAAT
* * * *
769 AAAAAGGTGCTACAGAGTCGTGGACTTTGG--GAAGAGATTGCCACTGAGTCGTGGACTTGGAAG
1 AAAAAGATGCCACTGAGTCGTGGAC-TTGGAAGAAAAGA-TGCCACTGAGTCGTGGACTTGGAAG
* ** * * * *
832 AAAAGGATGCCACTGAGTCGTGAACTTTGGGAAGAGATTGCTACTGAGTCGTGCATTTTTGAAGA
64 AAAA-GATGCCACTGAGTCGTGGACTTTAAGAAAAGA-TGCCACTGAGTCGTGGA-CTTTGAAGA
* * * *
897 AAAAGGATGCCACTGAGTGGTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTTGAAGAA
1 AAAAAGATGCCACTGAGTCGTGGACTTGGAAGAAAAGATGCCACTGAGTCGTGGACTTGGAAGAA
**
962 AAGATGCCACT-ATGTCGTGGACTTTAAAGAAAAGATGCCACTGAGTCGTGGACTTTGGGGA
66 AAGATGCCACTGA-GTCGTGGACTTT-AAGAAAAGATGCCACTGAGTCGTGGACTTTGAAGA
* * * *
1023 AAAAAGACGCCACTGAGTCATGGACTTGGAAGACAAGATGCCACTGAGTCATGGACTTGGAAGAA
1 AAAAAGATGCCACTGAGTCGTGGACTTGGAAGAAAAGATGCCACTGAGTCGTGGACTTGGAAGAA
* *
1088 AAGATGCCACTGAGTCATGGACTTTGAAGAAAAGATGCCACTGAGTTGTGGACTTTGAAGA
66 AAGATGCCACTGAGTCGTGGACTTT-AAGAAAAGATGCCACTGAGTCGTGGACTTTGAAGA
1149 AAAAAGATGCCACTGAGTCGTGGACTTGGAAGAAAAGATGCCACTGAGTCGTGGACTT-GAAGAA
1 AAAAAGATGCCACTGAGTCGTGGACTTGGAAGAAAAGATGCCACTGAGTCGTGGACTTGGAAGAA
1213 AAGA
66 AAGA
1217 GATTTGACGA
Statistics
Matches: 281, Mismatches: 34, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
125 10 0.04
126 172 0.61
127 39 0.14
128 54 0.19
129 6 0.02
ACGTcount: A:0.33, C:0.15, G:0.30, T:0.22
Consensus pattern (125 bp):
AAAAAGATGCCACTGAGTCGTGGACTTGGAAGAAAAGATGCCACTGAGTCGTGGACTTGGAAGAA
AAGATGCCACTGAGTCGTGGACTTTAAGAAAAGATGCCACTGAGTCGTGGACTTTGAAGA
Found at i:1207 original size:31 final size:31
Alignment explanation
Indices: 783--1216 Score: 513
Period size: 31 Copynumber: 13.8 Consensus size: 31
773 AGGTGCTACA
*
783 GAGTCGTGGACTTTGG--GAAGAGATTGCCACT
1 GAGTCGTGGAC-TTGGAAGAAAAGA-TGCCACT
814 GAGTCGTGGACTTGGAAGAAAAGGATGCCACT
1 GAGTCGTGGACTTGGAAGAAAA-GATGCCACT
* * *
846 GAGTCGTGAACTTTGG--GAAGAGATTGCTACT
1 GAGTCGTGGAC-TTGGAAGAAAAGA-TGCCACT
* * *
877 GAGTCGTGCATTTTTGAAGAAAAAGGATGCCACT
1 GAGTCGTGGA-CTTGGAAG-AAAA-GATGCCACT
* *
911 GAGTGGTGGACTTTGAAGAAAAGATGCCACT
1 GAGTCGTGGACTTGGAAGAAAAGATGCCACT
*
942 GAGTCGTGGACTTTGAAGAAAAGATGCCACT
1 GAGTCGTGGACTTGGAAGAAAAGATGCCACT
**
973 -ATGTCGTGGACTTTAAAGAAAAGATGCCACT
1 GA-GTCGTGGACTTGGAAGAAAAGATGCCACT
*
1004 GAGTCGTGGACTTTGGGGAA-AAAAGACGCCACT
1 GAGTCGTGGAC-TT--GGAAGAAAAGATGCCACT
* *
1037 GAGTCATGGACTTGGAAGACAAGATGCCACT
1 GAGTCGTGGACTTGGAAGAAAAGATGCCACT
*
1068 GAGTCATGGACTTGGAAGAAAAGATGCCACT
1 GAGTCGTGGACTTGGAAGAAAAGATGCCACT
* *
1099 GAGTCATGGACTTTGAAGAAAAGATGCCACT
1 GAGTCGTGGACTTGGAAGAAAAGATGCCACT
* *
1130 GAGTTGTGGACTTTGAAGAAAAAAGATGCCACT
1 GAGTCGTGGACTTGGAAG--AAAAGATGCCACT
1163 GAGTCGTGGACTTGGAAGAAAAGATGCCACT
1 GAGTCGTGGACTTGGAAGAAAAGATGCCACT
1194 GAGTCGTGGACTT-GAAGAAAAGA
1 GAGTCGTGGACTTGGAAGAAAAGA
1217 GATTTGACGA
Statistics
Matches: 359, Mismatches: 26, Indels: 37
0.85 0.06 0.09
Matches are distributed among these distances:
30 21 0.06
31 222 0.62
32 30 0.08
33 65 0.18
34 19 0.05
35 2 0.01
ACGTcount: A:0.32, C:0.15, G:0.30, T:0.22
Consensus pattern (31 bp):
GAGTCGTGGACTTGGAAGAAAAGATGCCACT
Found at i:2458 original size:6 final size:6
Alignment explanation
Indices: 2443--2493 Score: 52
Period size: 6 Copynumber: 8.5 Consensus size: 6
2433 TTTGTGTGTA
* *
2443 TTTTTT TTTTTG TTTTTG TTTTTG TTTTT- TTGTGTTG TTTTT- TTTTAG
1 TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TT-T-TTG TTTTTG TTTTTG
2491 TTT
1 TTT
2494 GCACTTTTGA
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
5 6 0.15
6 28 0.72
7 3 0.08
8 2 0.05
ACGTcount: A:0.02, C:0.00, G:0.14, T:0.84
Consensus pattern (6 bp):
TTTTTG
Found at i:2487 original size:14 final size:13
Alignment explanation
Indices: 2429--2488 Score: 68
Period size: 13 Copynumber: 4.5 Consensus size: 13
2419 GCTCTTTTCC
2429 TTTTTTTGTGTGTAT
1 TTTTTTTGT-TGT-T
*
2444 TTTTTTTTTTGTT
1 TTTTTTTGTTGTT
*
2457 TTTGTTT-TTGTT
1 TTTTTTTGTTGTT
*
2469 TTTTTGTGTTGTT
1 TTTTTTTGTTGTT
2482 TTTTTTT
1 TTTTTTT
2489 AGTTTGCACT
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
12 10 0.26
13 18 0.46
14 3 0.08
15 8 0.21
ACGTcount: A:0.02, C:0.00, G:0.15, T:0.83
Consensus pattern (13 bp):
TTTTTTTGTTGTT
Found at i:9503 original size:13 final size:13
Alignment explanation
Indices: 9485--9509 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9475 TACATAGATC
9485 AATGTATCGATAT
1 AATGTATCGATAT
9498 AATGTATCGATA
1 AATGTATCGATA
9510 CATTGAGTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.16, T:0.36
Consensus pattern (13 bp):
AATGTATCGATAT
Found at i:9508 original size:33 final size:33
Alignment explanation
Indices: 9466--9529 Score: 103
Period size: 33 Copynumber: 1.9 Consensus size: 33
9456 AAATTCCCAG
9466 ATGTATCGATACATAGA-TCAATGTATCGATATA
1 ATGTATCGATACATAGAGT-AATGTATCGATATA
*
9499 ATGTATCGATACATTGAGTAATGTATCGATA
1 ATGTATCGATACATAGAGTAATGTATCGATA
9530 CATTTCCTTG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 28 0.97
34 1 0.03
ACGTcount: A:0.38, C:0.11, G:0.17, T:0.34
Consensus pattern (33 bp):
ATGTATCGATACATAGAGTAATGTATCGATATA
Found at i:10521 original size:49 final size:49
Alignment explanation
Indices: 10303--11231 Score: 808
Period size: 49 Copynumber: 19.4 Consensus size: 49
10293 AAAAAGATGT
* * * * * ** *
10303 CAATGTGCTGATTCATGGTCAGCGACATTAGACTTGAAGATGAGAAAAATAC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT--G-AAGGTGC
* * ** * *
10355 CAATGTGCTGATTCACGGTTAGCGACATTAGACTTAAAGATG-ACGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* * * * *
10403 CAATATGCTGATTCAAGGCCAGCAATATTGGGCTTAAAAATGGTTGAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT-G--AAGGTGC
* * * * * * *
10455 CGATGTACTGATTCAAGGCCAACGGCATCGGTCTTAAAGATGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* * * *
10504 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAAATAAAGATGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
*
10553 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
** *
10602 CAATGCGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGGCGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG---AAGGTGC
* *
10654 CAATATGCTGATTTAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
** * *
10703 CAATGCGTTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGGCGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG---AAGGTGC
* *
10755 CAATATGCTGATTCAAGGCTAGCGATATTGGACTTAAAGATGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* *
10804 CAATGTGCTGATTCAAGGCCAGTGACATTGGACTTAAAGATGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
*
10853 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* * ** ** *
10896 CAATGTGCTGATTCAAGGCCAGGGACATTGCTCTTAAAGACAAAAGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
*
10945 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* * * ** * *
10988 TAATGTGCTGATTCAAGGCCAGTGACATTGGTTTTAAAGATAAAGTTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* * * *
11037 CAATATGCTGATTCAAGACCAGCAATATTGGGC-T-----T----GTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* * * * * *
11076 CGATGTGCTGATTCAAGGCCAGCGACATTGGTCTTGAAGATAAAGATGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* * * *
11125 CAATATGTTGATTCAAGGCCAGCAATATTGGGC-T-----T----GTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* * * * *
11164 CGATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGATGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
11213 CAATATGCTGATTCAAGGC
1 CAATATGCTGATTCAAGGC
11232 TAGTAATATT
Statistics
Matches: 715, Mismatches: 120, Indels: 87
0.78 0.13 0.09
Matches are distributed among these distances:
39 60 0.08
40 2 0.00
43 74 0.10
45 4 0.01
47 2 0.00
48 37 0.05
49 373 0.52
50 1 0.00
51 1 0.00
52 161 0.23
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (49 bp):
CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
Found at i:10540 original size:101 final size:101
Alignment explanation
Indices: 10303--11246 Score: 928
Period size: 101 Copynumber: 9.9 Consensus size: 101
10293 AAAAAGATGT
* * * * * ** * *
10303 CAATGTGCTGATTCATGGTCAGCGACATTAGACTTGAAGATGAGAAAAATACCAATGTGCTGATT
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGGTGCCAATATGCTGATT
* ** * * *
10368 CACGGTTAGCGACATTAGACTTAAAGATG-ACGTGC
66 CAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * * * * **** * * *
10403 CAATATGCTGATTCAAGGCCAGCAATATTGGGCTTAAAAATGGTTGAGGTGCCGATGTACTGATT
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGGTGCCAATATGCTGATT
* ** * *
10468 CAAGGCCAACGGCATCGGTCTTAAAGATGAAGGTGC
66 CAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* *
10504 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAA-A--ATAAAGATGCCAATATGCTGATT
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGGTGCCAATATGCTGATT
10566 CAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
66 CAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* *
10602 CAATGCGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGGCGCCAATATGCTGATT
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGGTGCCAATATGCTGATT
*
10667 TAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
66 CAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * *
10703 CAATGCGTTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGGCGCCAATATGCTGATT
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGGTGCCAATATGCTGATT
*
10768 CAAGGCTAGCGATATTGGACTTAAAGATGAAGGTGC
66 CAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
*
10804 CAATGTGCTGATTCAAGGCCAGTGACATTGGACTTAAAGATG---AAGGTGCCAATATGCTGATT
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGGTGCCAATATGCTGATT
10866 CAAGGCCAGCGATATTGGACTT----A--AAGGTGC
66 CAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* ** *
10896 CAATGTGCTGATTCAAGGCCAGGGACATTGCTCTT-AA-A-GACAAAAGTGCCAATATGCTGATT
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGGTGCCAATATGCTGATT
10958 CAAGGCCAGCGATATTGGACTT----A--AAGGTGC
66 CAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * ** *
10988 TAATGTGCTGATTCAAGGCCAGTGACATTGGTTTTAAAGAT---AAAGTTGCCAATATGCTGATT
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGGTGCCAATATGCTGATT
* * *
11050 CAAGACCAGCAATATTGGGC-T-----T----GTGC
66 CAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * * * *
11076 CGATGTGCTGATTCAAGGCCAGCGACATTGGTCTTGAAGAT---AAAGATGCCAATATGTTGATT
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGGTGCCAATATGCTGATT
* *
11138 CAAGGCCAGCAATATTGGGC-T-----T----GTGC
66 CAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * *
11164 CGATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGAT---AAAGATGCCAATATGCTGATT
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGGTGCCAATATGCTGATT
* **
11226 CAAGGCTAGTAATATTGGACT
66 CAAGGCCAGCGATATTGGACT
11247 CGTGCCGATG
Statistics
Matches: 750, Mismatches: 82, Indels: 35
0.87 0.09 0.04
Matches are distributed among these distances:
88 161 0.21
89 1 0.00
90 1 0.00
91 3 0.00
92 155 0.21
93 2 0.00
94 2 0.00
98 124 0.17
99 1 0.00
100 69 0.09
101 231 0.31
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (101 bp):
CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGGTGCCAATATGCTGATT
CAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
Found at i:10583 original size:150 final size:147
Alignment explanation
Indices: 10303--11231 Score: 799
Period size: 150 Copynumber: 6.5 Consensus size: 147
10293 AAAAAGATGT
* * * * * ** *
10303 CAATGTGCTGATTCATGGTCAGCGACATTAGACTTGAAGATGAGAAAAATACCAATGTGCTGATT
1 CAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGAT--G-AAGGTGCCAATGTGCTGATT
* ** * * *
10368 CACGGTTAGCGACATTAGACTTAAAGATG-ACGTGCCAATATGCTGATTCAAGGCCAGCAATATT
63 CAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATT
* *
10432 GGGCTTAAAAATGGTTGAGGTGC
128 GGACTTAAAAAT-G--AAGGTGC
* * * * *
10455 CGATGTACTGATTCAAGGCCAACGGCATCGGTCTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
* * *
10520 GGCCAGCGACATTGGACTTAAAAATAAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGA
66 GGCCAGCGACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGA
*
10585 CTTAAAGATGAAGGTGC
131 CTTAAAAATGAAGGTGC
* * * *
10602 CAATGCGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGGCGCCAATATGCTGATT
1 CAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATG---AAGGTGCCAATGTGCTGATT
* * ** * *
10667 TAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGCGTTGATTCAAGGCCAGCGACATT
63 CAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATT
* *
10732 GGACTTAAAGATGACAAAGGCGC
128 GGACTTAAAAATG---AAGGTGC
* * * *
10755 CAATATGCTGATTCAAGGCTAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
*
10820 GGCCAGTGACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGA
66 GGCCAGCGACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGA
10885 CTT----A--AAGGTGC
131 CTTAAAAATGAAGGTGC
** ** ** * *
10896 CAATGTGCTGATTCAAGGCCAGGGACATTGCTCTTAAAGACAAAAGTGCCAATATGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
* * * * * *
10961 GGCCAGCGATATTGGACTT----A--AAGGTGCTAATGTGCTGATTCAAGGCCAGTGACATTGGT
66 GGCCAGCGACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGA
* * * *
11020 TTTAAAGATAAAGTTGC
131 CTTAAAAATGAAGGTGC
* * * * * * *
11037 CAATATGCTGATTCAAGACCAGCAATATTGGGC-T-----T----GTGCCGATGTGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
* * * * * * *
11092 GGCCAGCGACATTGGTCTTGAAGATAAAGATGCCAATATGTTGATTCAAGGCCAGCAATATTGGG
66 GGCCAGCGACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGA
11157 C-T-----T----GTGC
131 CTTAAAAATGAAGGTGC
* * * * * *
11164 CGATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGATGCCAATATGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
11229 GGC
66 GGC
11232 TAGTAATATT
Statistics
Matches: 640, Mismatches: 108, Indels: 73
0.78 0.13 0.09
Matches are distributed among these distances:
127 30 0.05
128 1 0.00
131 36 0.06
133 1 0.00
135 37 0.06
136 1 0.00
137 52 0.08
139 1 0.00
140 1 0.00
141 110 0.17
146 1 0.00
147 41 0.06
149 41 0.06
150 212 0.33
152 31 0.05
153 44 0.07
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (147 bp):
CAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
GGCCAGCGACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGA
CTTAAAAATGAAGGTGC
Found at i:11098 original size:39 final size:39
Alignment explanation
Indices: 11042--11274 Score: 142
Period size: 39 Copynumber: 5.5 Consensus size: 39
11032 GTTGCCAATA
*
11042 TGCTGATTCAAGACCAGCAATATTGGGCTTGTGCCGATG
1 TGCTGATTCAAGGCCAGCAATATTGGGCTTGTGCCGATG
* * * * *
11081 TGCTGATTCAAGGCCAGCGACATTGGTCTTGAAGATAAAGATGCCAATA
1 TGCTGATTCAAGGCCAGCAATATTGGGC-T-----T---G-TGCCGATG
*
11130 TGTTGATTCAAGGCCAGCAATATTGGGCTTGTGCCGATG
1 TGCTGATTCAAGGCCAGCAATATTGGGCTTGTGCCGATG
* * * * *
11169 TGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGATGCCAATA
1 TGCTGATTCAAGGCCAGCAATATTGGGC-T-----T---G-TGCCGATG
* * * *
11218 TGCTGATTCAAGGCTAGTAATATTGGACTCGTGCCGATG
1 TGCTGATTCAAGGCCAGCAATATTGGGCTTGTGCCGATG
11257 TGCTGATTCAAGGCCAGC
1 TGCTGATTCAAGGCCAGC
11275 GACATTGGTC
Statistics
Matches: 146, Mismatches: 28, Indels: 40
0.68 0.13 0.19
Matches are distributed among these distances:
39 76 0.52
40 4 0.03
43 1 0.01
45 2 0.01
48 4 0.03
49 59 0.40
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (39 bp):
TGCTGATTCAAGGCCAGCAATATTGGGCTTGTGCCGATG
Found at i:11119 original size:88 final size:88
Alignment explanation
Indices: 10800--11287 Score: 672
Period size: 88 Copynumber: 5.5 Consensus size: 88
10790 AAAGATGAAG
* * * *
10800 GTGCCAATGTGCTGATTCAAGGCCAGTGACATTGGACTTAAAGATGAAGGTGCCAATATGCTGAT
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGATGCCAATATGCTGAT
*
10865 TCAAGGCCAGCGATATTGGACTT
66 TCAAGGCCAGCAATATTGGACTT
* * *
10888 AAAGGTGCCAATGTGCTGATTCAAGGCCAGGGACATTGCTCTTAAAGACAAA-AGTGCCAATATG
1 ----GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGA-TGCCAATATG
*
10952 CTGATTCAAGGCCAGCGATATTGGACTT
61 CTGATTCAAGGCCAGCAATATTGGACTT
* * * *
10980 AAAGGTGCTAATGTGCTGATTCAAGGCCAGTGACATTGGTTTTAAAGATAAAGTTGCCAATATGC
1 ----GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGATGCCAATATGC
* *
11045 TGATTCAAGACCAGCAATATTGGGCTT
62 TGATTCAAGGCCAGCAATATTGGACTT
* * *
11072 GTGCCGATGTGCTGATTCAAGGCCAGCGACATTGGTCTTGAAGATAAAGATGCCAATATGTTGAT
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGATGCCAATATGCTGAT
*
11137 TCAAGGCCAGCAATATTGGGCTT
66 TCAAGGCCAGCAATATTGGACTT
*
11160 GTGCCGATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGATGCCAATATGCTGAT
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGATGCCAATATGCTGAT
* * *
11225 TCAAGGCTAGTAATATTGGACTC
66 TCAAGGCCAGCAATATTGGACTT
*
11248 GTGCCGATGTGCTGATTCAAGGCCAGCGACATTGGTCTTA
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTA
11288 GAAGGGTTGC
Statistics
Matches: 365, Mismatches: 29, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
88 202 0.55
92 163 0.45
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (88 bp):
GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGATGCCAATATGCTGAT
TCAAGGCCAGCAATATTGGACTT
Found at i:11329 original size:33 final size:33
Alignment explanation
Indices: 11287--11353 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
11277 CATTGGTCTT
11287 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
*
11320 AGAATGGTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
11353 A
1 A
11354 AGGGGGTGCC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.19, C:0.18, G:0.34, T:0.28
Consensus pattern (33 bp):
AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
Found at i:11417 original size:27 final size:27
Alignment explanation
Indices: 11387--11494 Score: 162
Period size: 27 Copynumber: 4.0 Consensus size: 27
11377 CTTAAAAGGA
*
11387 AAAAGAGTGCCACGGAGTTGTGGGCTT
1 AAAAGGGTGCCACGGAGTTGTGGGCTT
*
11414 AAAAGGGTGCCACGAAGTTGTGGGCTT
1 AAAAGGGTGCCACGGAGTTGTGGGCTT
* *
11441 AAAAGGGTGCCACGGAGTTGTGGACCT
1 AAAAGGGTGCCACGGAGTTGTGGGCTT
**
11468 AAAAGGGTGCCGTGGAGTTGTGGGCTT
1 AAAAGGGTGCCACGGAGTTGTGGGCTT
11495 TTAAAAAGAC
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 72 1.00
ACGTcount: A:0.24, C:0.15, G:0.39, T:0.22
Consensus pattern (27 bp):
AAAAGGGTGCCACGGAGTTGTGGGCTT
Found at i:11520 original size:35 final size:33
Alignment explanation
Indices: 11481--11554 Score: 85
Period size: 33 Copynumber: 2.2 Consensus size: 33
11471 AGGGTGCCGT
* * *
11481 GGAGTTGTGGGCTTTTAAAAAGACAAAGGTGCCAC
1 GGAGTTGTGGAC--TTAAAAAGAAAAAGATGCCAC
* *
11516 GGAGTGGTGGACTTAAAAGGAAAAAGATGCCAC
1 GGAGTTGTGGACTTAAAAAGAAAAAGATGCCAC
11549 GGAGTT
1 GGAGTT
11555 ACAAAATTTG
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
33 23 0.70
35 10 0.30
ACGTcount: A:0.34, C:0.12, G:0.34, T:0.20
Consensus pattern (33 bp):
GGAGTTGTGGACTTAAAAAGAAAAAGATGCCAC
Found at i:11844 original size:95 final size:93
Alignment explanation
Indices: 11571--12017 Score: 578
Period size: 95 Copynumber: 4.7 Consensus size: 93
11561 TTTGAAAATA
* * * * *
11571 AAAAGGTGCCACAGAGTCGTGGACTTTG-GGAAGAGATTGCCACTGAGTCGTGGACTTGGAAGAA
1 AAAAGATGCCACTGAGTCGTGGACTTTGAAGAAAAGA-TGCCACTGAGTCGTGGACTTTGAAGAA
*
11635 AAGGATGCCACTGAGTCGTGGACTTTG-GG
65 AA-GATGCCACTGAGTCGTGGACTTTGAAG
* * * * *
11664 AAGAGATTGCTACTGAGTCGTGCATTTTTGAAGAAAAAGGATGCCACTGAGTGGTGGACTTTGAA
1 AAAAGA-TGCCACTGAGTCGTGGA-CTTTGAAG-AAAA-GATGCCACTGAGTCGTGGACTTTGAA
11729 GAAAAGATGCCACTGAGTCGTGGACTTTGAAG
62 GAAAAGATGCCACTGAGTCGTGGACTTTGAAG
* *
11761 AAAAGATGCCACTGTGTCGTGGACTTTGAAGAAAAGATGCCACTGAGTTGTGGACTTTGGGGAA-
1 AAAAGATGCCACTGAGTCGTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTT---GAAG
* *
11825 AAAAGACGCCACTGAGTCGTGGACTTGGAAG
63 AAAAGATGCCACTGAGTCGTGGACTTTGAAG
* * *
11856 AAAAGATGCCACTGAGTCGTGGACTTGGAAGAAAAGATGCCATTGAGTCGTGGACTTTGAAGAAG
1 AAAAGATGCCACTGAGTCGTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTTGAAGAAA
* *
11921 AGATGCCACTGAATTGTGGACTTTGAAG
66 AGATGCCACTGAGTCGTGGACTTTGAAG
*
11949 AAAAAAGATGCCACTGAGTCGTGGACTTGGAAGAAAAGATGCCACTGAGTCGTGGAC-TTGAAGA
1 --AAAAGATGCCACTGAGTCGTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTTGAAGA
12013 AAAGA
64 AAAGA
12018 GATTTGACAA
Statistics
Matches: 312, Mismatches: 30, Indels: 23
0.85 0.08 0.06
Matches are distributed among these distances:
92 3 0.01
93 52 0.17
94 29 0.09
95 148 0.47
96 42 0.13
97 36 0.12
98 2 0.01
ACGTcount: A:0.32, C:0.15, G:0.31, T:0.22
Consensus pattern (93 bp):
AAAAGATGCCACTGAGTCGTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTTGAAGAAA
AGATGCCACTGAGTCGTGGACTTTGAAG
Found at i:11863 original size:126 final size:126
Alignment explanation
Indices: 11561--12017 Score: 652
Period size: 126 Copynumber: 3.6 Consensus size: 126
11551 AGTTACAAAA
* * * *
11561 TTTGAAAATAAAAAGGTGCCACAGAGTCGTGGACTTTGG--GAAGAGATTGCCACTGAGTCGTGG
1 TTTGAAGA-AAAAAGATGCCACTGAGTCGTGGAC-TTGGAAGAAAAGA-TGCCACTGAGTCGTGG
* * * *
11624 ACTTGGAAGAAAAGGATGCCACTGAGTCGTGGACTTTG-GGAAGAGATTGCTACTGAGTCGTGCA
63 ACTTGGAAGAAAA-GATGCCACTGAGTCGTGGACTTTGAAGAAGAGA-TGCCACTGAGTTGTGGA
*
11688 TT
126 -C
* * *
11690 TTTGAAGAAAAAGGATGCCACTGAGTGGTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACT
1 TTTGAAGAAAAAAGATGCCACTGAGTCGTGGACTTGGAAGAAAAGATGCCACTGAGTCGTGGACT
* * *
11755 TTGAAGAAAAGATGCCACTGTGTCGTGGACTTTGAAGAAAAGATGCCACTGAGTTGTGGAC
66 TGGAAGAAAAGATGCCACTGAGTCGTGGACTTTGAAGAAGAGATGCCACTGAGTTGTGGAC
** *
11816 TTTGGGGAAAAAAGACGCCACTGAGTCGTGGACTTGGAAGAAAAGATGCCACTGAGTCGTGGACT
1 TTTGAAGAAAAAAGATGCCACTGAGTCGTGGACTTGGAAGAAAAGATGCCACTGAGTCGTGGACT
* *
11881 TGGAAGAAAAGATGCCATTGAGTCGTGGACTTTGAAGAAGAGATGCCACTGAATTGTGGAC
66 TGGAAGAAAAGATGCCACTGAGTCGTGGACTTTGAAGAAGAGATGCCACTGAGTTGTGGAC
11942 TTTGAAGAAAAAAGATGCCACTGAGTCGTGGACTTGGAAGAAAAGATGCCACTGAGTCGTGGACT
1 TTTGAAGAAAAAAGATGCCACTGAGTCGTGGACTTGGAAGAAAAGATGCCACTGAGTCGTGGACT
12007 T-GAAGAAAAGA
66 TGGAAGAAAAGA
12018 GATTTGACAA
Statistics
Matches: 296, Mismatches: 29, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
125 10 0.03
126 178 0.60
127 40 0.14
128 55 0.19
129 13 0.04
ACGTcount: A:0.32, C:0.14, G:0.31, T:0.23
Consensus pattern (126 bp):
TTTGAAGAAAAAAGATGCCACTGAGTCGTGGACTTGGAAGAAAAGATGCCACTGAGTCGTGGACT
TGGAAGAAAAGATGCCACTGAGTCGTGGACTTTGAAGAAGAGATGCCACTGAGTTGTGGAC
Found at i:12008 original size:31 final size:31
Alignment explanation
Indices: 11571--12017 Score: 546
Period size: 31 Copynumber: 14.2 Consensus size: 31
11561 TTTGAAAATA
* *
11571 AAAAGGTGCCACAGAGTCGTGGACTTTGG--G
1 AAAAGATGCCACTGAGTCGTGGAC-TTGGAAG
*
11601 AAGAGATTGCCACTGAGTCGTGGACTTGGAAG
1 AAAAGA-TGCCACTGAGTCGTGGACTTGGAAG
11633 AAAAGGATGCCACTGAGTCGTGGACTTTGG--G
1 AAAA-GATGCCACTGAGTCGTGGAC-TTGGAAG
* * * * *
11664 AAGAGATTGCTACTGAGTCGTGCATTTTTGAAG
1 AAAAGA-TGCCACTGAGTCGTGGA-CTTGGAAG
* *
11697 AAAAAGGATGCCACTGAGTGGTGGACTTTGAAG
1 -AAAA-GATGCCACTGAGTCGTGGACTTGGAAG
*
11730 AAAAGATGCCACTGAGTCGTGGACTTTGAAG
1 AAAAGATGCCACTGAGTCGTGGACTTGGAAG
* *
11761 AAAAGATGCCACTGTGTCGTGGACTTTGAAG
1 AAAAGATGCCACTGAGTCGTGGACTTGGAAG
*
11792 AAAAGATGCCACTGAGTTGTGGACTTTGGGGAA-
1 AAAAGATGCCACTGAGTCGTGGAC-TT--GGAAG
*
11825 AAAAGACGCCACTGAGTCGTGGACTTGGAAG
1 AAAAGATGCCACTGAGTCGTGGACTTGGAAG
11856 AAAAGATGCCACTGAGTCGTGGACTTGGAAG
1 AAAAGATGCCACTGAGTCGTGGACTTGGAAG
* *
11887 AAAAGATGCCATTGAGTCGTGGACTTTGAAG
1 AAAAGATGCCACTGAGTCGTGGACTTGGAAG
* * * *
11918 AAGAGATGCCACTGAATTGTGGACTTTGAAG
1 AAAAGATGCCACTGAGTCGTGGACTTGGAAG
11949 AAAAAAGATGCCACTGAGTCGTGGACTTGGAAG
1 --AAAAGATGCCACTGAGTCGTGGACTTGGAAG
11982 AAAAGATGCCACTGAGTCGTGGACTT-GAAG
1 AAAAGATGCCACTGAGTCGTGGACTTGGAAG
12012 AAAAGA
1 AAAAGA
12018 GATTTGACAA
Statistics
Matches: 368, Mismatches: 32, Indels: 34
0.85 0.07 0.08
Matches are distributed among these distances:
30 24 0.07
31 229 0.62
32 30 0.08
33 63 0.17
34 20 0.05
35 2 0.01
ACGTcount: A:0.32, C:0.15, G:0.31, T:0.22
Consensus pattern (31 bp):
AAAAGATGCCACTGAGTCGTGGACTTGGAAG
Found at i:12888 original size:14 final size:13
Alignment explanation
Indices: 12865--12904 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 13
12855 GTAATAAGTG
12865 AAAATAAAAAATT
1 AAAATAAAAAATT
*
12878 AAAATTAAAAAAAT
1 AAAA-TAAAAAATT
12892 AATAATAAAAAAT
1 AA-AATAAAAAAT
12905 GAAGGCATGG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
13 4 0.17
14 17 0.74
15 2 0.09
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.23
Consensus pattern (13 bp):
AAAATAAAAAATT
Found at i:12918 original size:13 final size:14
Alignment explanation
Indices: 12902--13001 Score: 50
Period size: 14 Copynumber: 8.2 Consensus size: 14
12892 AATAATAAAA
12902 AATGA-AGGCATGG
1 AATGATAGGCATGG
*
12915 AATGATGGGCATGG
1 AATGATAGGCATGG
*
12929 AAT-ATA---A--A
1 AATGATAGGCATGG
12937 AATGA-AGGCATGG
1 AATGATAGGCATGG
*
12950 AATGATGGGCATGG
1 AATGATAGGCATGG
*
12964 AAT-ATA---A--A
1 AATGATAGGCATGG
12972 AATGA-AGGCATGG
1 AATGATAGGCATGG
*
12985 AATGATGGGCATGG
1 AATGATAGGCATGG
12999 AAT
1 AAT
13002 AAAAAATGAA
Statistics
Matches: 63, Mismatches: 9, Indels: 29
0.62 0.09 0.29
Matches are distributed among these distances:
8 8 0.13
9 2 0.03
10 2 0.03
11 2 0.03
13 19 0.30
14 30 0.48
ACGTcount: A:0.41, C:0.06, G:0.33, T:0.20
Consensus pattern (14 bp):
AATGATAGGCATGG
Found at i:12938 original size:35 final size:34
Alignment explanation
Indices: 12895--13030 Score: 254
Period size: 35 Copynumber: 3.9 Consensus size: 34
12885 AAAAAATAAT
12895 AATAAAAAATGAAGGCATGGAATGATGGGCATGG
1 AATAAAAAATGAAGGCATGGAATGATGGGCATGG
12929 AATATAAAAATGAAGGCATGGAATGATGGGCATGG
1 AATA-AAAAATGAAGGCATGGAATGATGGGCATGG
12964 AATATAAAAATGAAGGCATGGAATGATGGGCATGG
1 AATA-AAAAATGAAGGCATGGAATGATGGGCATGG
12999 AATAAAAAATGAAGGCATGGAATGATGGGCAT
1 AATAAAAAATGAAGGCATGGAATGATGGGCAT
13031 AAAAATGAAA
Statistics
Matches: 101, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
34 32 0.32
35 69 0.68
ACGTcount: A:0.44, C:0.06, G:0.31, T:0.19
Consensus pattern (34 bp):
AATAAAAAATGAAGGCATGGAATGATGGGCATGG
Found at i:12947 original size:21 final size:21
Alignment explanation
Indices: 12922--12987 Score: 74
Period size: 21 Copynumber: 3.5 Consensus size: 21
12912 TGGAATGATG
12922 GGCATGGAATATAAAAATGAA
1 GGCATGGAATATAAAAATGAA
*
12943 GGCATGG-A-AT---GATG--
1 GGCATGGAATATAAAAATGAA
12957 GGCATGGAATATAAAAATGAA
1 GGCATGGAATATAAAAATGAA
12978 GGCATGGAAT
1 GGCATGGAAT
12988 GATGGGCATG
Statistics
Matches: 36, Mismatches: 2, Indels: 14
0.69 0.04 0.27
Matches are distributed among these distances:
14 7 0.19
15 1 0.03
16 5 0.14
19 5 0.14
20 1 0.03
21 17 0.47
ACGTcount: A:0.44, C:0.06, G:0.30, T:0.20
Consensus pattern (21 bp):
GGCATGGAATATAAAAATGAA
Found at i:13034 original size:28 final size:29
Alignment explanation
Indices: 12899--13047 Score: 129
Period size: 35 Copynumber: 4.6 Consensus size: 29
12889 AATAATAATA
12899 AAAAATGAAGGCATGGAATGATGGGCATGGAATAT
1 AAAAATGAAGGCATGGAATGATGGGC-----A-AT
12934 AAAAATGAAGGCATGGAATGATGGGCATGGAATAT
1 AAAAATGAAGGCATGGAATGATGGGC-----A-AT
12969 AAAAATGAAGGCATGGAATGATGGGCATGGAAT
1 AAAAATGAAGGCATGGAATGATGGGC----AAT
13002 AAAAAATGAAGGCATGGAATGATGGGC-AT
1 -AAAAATGAAGGCATGGAATGATGGGCAAT
*
13031 AAAAATGAAAGCATGGA
1 AAAAATGAAGGCATGGA
13048 CGAAAATGAG
Statistics
Matches: 109, Mismatches: 4, Indels: 9
0.89 0.03 0.07
Matches are distributed among these distances:
28 16 0.15
29 2 0.02
33 2 0.02
34 28 0.26
35 61 0.56
ACGTcount: A:0.45, C:0.06, G:0.31, T:0.18
Consensus pattern (29 bp):
AAAAATGAAGGCATGGAATGATGGGCAAT
Found at i:14279 original size:27 final size:25
Alignment explanation
Indices: 14245--14320 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 25
14235 ATTTTTCACA
14245 ATCGGGGATACTCCAACCCCGTTAAT
1 ATCGGGGATACTCCAACCCCGTT-AT
*
14271 CATCGGGGATACTTCAACCCCGTTAT
1 -ATCGGGGATACTCCAACCCCGTTAT
*
14297 TTCCGAGGAGATACTCCAACCCCG
1 AT-CG-GG-GATACTCCAACCCCG
14321 GCTTTATTTC
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
25 1 0.02
26 4 0.09
27 24 0.56
28 14 0.33
ACGTcount: A:0.25, C:0.33, G:0.20, T:0.22
Consensus pattern (25 bp):
ATCGGGGATACTCCAACCCCGTTAT
Found at i:14368 original size:79 final size:79
Alignment explanation
Indices: 14272--14512 Score: 410
Period size: 79 Copynumber: 3.1 Consensus size: 79
14262 CCCGTTAATC
* * *
14272 ATCGGGGATACTTCAACCCCGTTATTTCCGAGGAGATACTCCAACCCCGGCTTTATTTCTAAAAC
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAAC
14337 ATCAATTTTTCATA
66 ATCAATTTTTCATA
* * *
14351 ATCGGGGATACTCCAACCCCGTTATTTCTGAGGGGATACTCTAACCCCGGTTTTATCTCTAAAAC
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAAC
*
14416 ATCAAATTTTCATA
66 ATCAATTTTTCATA
*
14430 ATCGGGGATACTCCAATCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAAC
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAAC
14495 ATCAATTTTTCATA
66 ATCAATTTTTCATA
14509 ATCG
1 ATCG
14513 CGATAACACC
Statistics
Matches: 150, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
79 150 1.00
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (79 bp):
ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAAC
ATCAATTTTTCATA
Found at i:15638 original size:55 final size:54
Alignment explanation
Indices: 15545--16219 Score: 834
Period size: 55 Copynumber: 12.0 Consensus size: 54
15535 ACGCCTTTTT
15545 CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACG
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACC-TTCAGTCCTCAAAGAGCAGGACG
* ** *
15600 CCTCTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCTTCAAAGAGCAGGACG
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCTT-CAGTCCTCAAAGAGCAGGACG
* *
15655 CCTCTT-AAAGCCCACACAGGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACA
1 CCT-TTCAAAGCCCACACAAGTTGGTGGCACCTT-CAGTCCTCAAAGAGCAGGACG
* ** *
15710 CCTTTTTTTTTTAAAGCCCACACAAGTTGGTGGCATTTTTCAGTCCTCAAAGAGCAGGACA
1 CC------TTTCAAAGCCCACACAAGTTGGTGGCA-CCTTCAGTCCTCAAAGAGCAGGACG
* * *
15771 CCTTTCAAAGCCCACACAAGTCGGTGGCACCTTTCAATCTTCAAAGAGCAGGACG
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACC-TTCAGTCCTCAAAGAGCAGGACG
* *
15826 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACG
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACG
* * *
15880 CCTTTTAAAGCCCACACAAGTTGGTGGAACCTTCAGCCCTCAAAGAGCAGGACG
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACG
*
15934 CCTTCTCCATTCAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACT
1 -C--CT---TTCAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACG
* * *
15994 CCTTTTAAAGCCAACACAAGTTGGTGGC-GCTTCCTAGTCCTCAAAGAGCAGGACG
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCTT-C-AGTCCTCAAAGAGCAGGACG
*
16049 CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGATG
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACG
* *
16103 CCTTCTCCTTTTAAAGCCCACATAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACT
1 CCTT-T-C----AAAGCCCACACAAGTTGGTGGCACC-TTCAGTCCTCAAAGAGCAGGACG
*
16164 CCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCTAGTCCTCAAAGAGCAGGACG
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCTT-C-AGTCCTCAAAGAGCAGGACG
16219 C
1 C
16220 TCTCTCCTTT
Statistics
Matches: 545, Mismatches: 46, Indels: 58
0.84 0.07 0.09
Matches are distributed among these distances:
53 5 0.01
54 122 0.22
55 261 0.48
56 5 0.01
57 4 0.01
59 1 0.00
60 74 0.14
61 71 0.13
62 2 0.00
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.22
Consensus pattern (54 bp):
CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACG
Found at i:15753 original size:171 final size:164
Alignment explanation
Indices: 15452--17103 Score: 1521
Period size: 149 Copynumber: 10.2 Consensus size: 164
15442 CTCTTTTAGC
* *
15452 CCTTCCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGAACCTT
1 CCTTTCAGTCCTCAAAGAGCAGGACG------CCTTTTAAAGCCCACACAAGTTGGTGGCACCTT
15517 -CAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCA
60 CCAGTCCTCAAAGAGCAGGACG-------CCTTTCAAAGCCCACACAAGTTGGTGGCACC-TTCA
15581 GTCCTCAAAGAGCAGGACGCCTCTCAAAGCCCACACAAGTTGGTGGCA
117 GTCCTCAAAGAGCAGGACGCCTCTCAAAGCCCACACAAGTTGGTGGCA
* * * *
15629 -TTTTCCAGTCTTCAAAGAGCAGGACGCCTCTTAAAGCCCACACAGGTTGGTGGCACCTTCCAGT
1 CCTTT-CAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCCAGT
* * **
15693 CCTCAAAGAGCAGGACACCTTTTTTTTTTAAAGCCCACACAAGTTGGTGGCATTTTTCAGTCCTC
65 CCTCAAAGAGCAGGACGCC------TTTCAAAGCCCACACAAGTTGGTGGCA-CCTTCAGTCCTC
* * *
15758 AAAGAGCAGGACACCTTTCAAAGCCCACACAAGTCGGTGGCA
123 AAAGAGCAGGACGCCTCTCAAAGCCCACACAAGTTGGTGGCA
* * *
15800 CCTTTCAATCTTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTT-TAGTC
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCCAGTC
* * *
15864 CTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGAACCTTCAGCCCTCAAAGAGCA
66 CTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCA
15929 GGACGCCTTCTCCATTCAAAGCCCACACAAGTTGGTGGCA
131 GGACG-C--CT-C--TCAAAGCCCACACAAGTTGGTGGCA
* * *
15969 CC-TTCAGTCCTCAAAGAGCAGGACTCCTTTTAAAGCCAACACAAGTTGGTGGC-GCTTCCTAGT
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCC-AGT
16032 CCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGC
65 CCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGC
* *
16097 AGGATGCCTTCTCCTTTTAAAGCCCACATAAGTTGGTGGCA
130 AGGACGCC-TCT-C----AAAGCCCACACAAGTTGGTGGCA
*
16138 CCTTTCAGTCCTCAAAGAGCAGGACTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCTAGT
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCC-AGT
* * **
16202 CCTCAAAGAGCAGGACG-C--T-----CTCTC-C---TT--T--CACCTTTTTGTCCTCAAAGAG
65 CCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACC-TTCAGTCCTCAAAGAG
*
16251 CAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
129 CAGGACGCCTCTCAAAGCCCACACAAGTTGGTGGCA
* * *
16287 CTTTTCAGTCCTCAAAGAGCAGGACACCTTTTAAAGCCCACACAAGTTGATGGCACCTT-CAGTC
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCCAGTC
* * *
16351 CTCAAAAAGTAGGACGCTTTCTCTTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCTAGTCCTC
66 CTCAAAGAGCAGGACG----C-C-TTTCAAAGCCCACACAAGTTGGTGGCACCTT-C-AGTCCTC
* *
16415 AAAGAGCAGGACG-CTCT-------CTC-C---TT--T--CG
123 AAAGAGCAGGACGCCTCTCAAAGCCCACACAAGTTGGTGGCA
** * * * *
16441 CCTTTTTGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTT
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCCAGTC
* *
16506 CTCAAAGAGCAGGACGCCTTTTAAAGCCCAAACAAGTTGGTGGCA-CTTCCTAGTCCTCAAAGAG
66 CTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTT-C-AGTCCTCAAAGAG
* *
16570 TAGGACG-CTCT-------CTC-C---TT--T--CA
129 CAGGACGCCTCTCAAAGCCCACACAAGTTGGTGGCA
** * * * *
16590 CCTTTTTGTCCTCAAAGAGTAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGAACCTTTCAGTC
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCCAGTC
* * * *
16655 CTCAAAGAGCAGGATGCCTTTTAAAGCCCACACGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGC
66 CTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA-CCTTCAGTCCTCAAAGAGC
* *
16720 AGGACGCCTGTCAAAGCCCACAAAAGTTGGTGGCA
130 AGGACGCCTCTCAAAGCCCACACAAGTTGGTGGCA
*
16755 CCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCTAGT
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCC-AGT
* * * *
16819 CCTCAAAGAGTAGGACG-C--T-----CTCTC-C---TT--T--CACCCTTTAGTCCTCAAAGAG
65 CCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA-CCTTCAGTCCTCAAAGAG
* *
16868 CAGGACGCCTTTCAAAGCCCATACAAGTTGGTGGCA
129 CAGGACGCCTCTCAAAGCCCACACAAGTTGGTGGCA
*
16904 CCTTT-AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTT-CAGTC
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCCAGTC
* * * *
16967 CTCAAAGAGCAGGATGCTTTCTTTTTGCAAATCCCACACTAGTTGGTGGCATCTTTCAGTCCTCA
66 CTCAAAGAGCAGGACGC---C--TTT-CAAAGCCCACACAAGTTGGTGGCA-CCTTCAGTCCTCA
* * *
17032 AAGAGCATGACGCCTTTTCTTTTCAAAGACCACACGAGTTGGTGGCA
124 AAGAGCAGGACGCC---TC---TCAAAGCCCACACAAGTTGGTGGCA
*
17079 CTTTTCAGTCCTCAAAGAGCAGGAC
1 CCTTTCAGTCCTCAAAGAGCAGGAC
17104 ACACTTCTTT
Statistics
Matches: 1260, Mismatches: 113, Indels: 205
0.80 0.07 0.13
Matches are distributed among these distances:
147 18 0.01
148 66 0.05
149 320 0.25
150 8 0.01
151 5 0.00
153 3 0.00
154 60 0.05
155 41 0.03
156 3 0.00
157 6 0.00
158 4 0.00
161 7 0.01
162 10 0.01
163 23 0.02
164 33 0.03
165 74 0.06
166 6 0.00
167 6 0.00
168 51 0.04
169 151 0.12
170 118 0.09
171 156 0.12
172 24 0.02
175 26 0.02
176 21 0.02
177 20 0.02
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.24
Consensus pattern (164 bp):
CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCCAGTC
CTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCA
GGACGCCTCTCAAAGCCCACACAAGTTGGTGGCA
Found at i:16297 original size:94 final size:94
Alignment explanation
Indices: 16136--16311 Score: 291
Period size: 94 Copynumber: 1.9 Consensus size: 94
16126 AAGTTGGTGG
* *
16136 CACCTTTCAGTCCTCAAAGAGCAGGACTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAG
1 CACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTCCTAG
16201 TCCTCAAAGAGCAGGACGCTCTCTCCTTT
66 TCCTCAAAGAGCAGGACGCTCTCTCCTTT
** *
16230 CACCTTTTTGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTT-TTCA
1 CACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTCCT-A
16294 GTCCTCAAAGAGCAGGAC
65 GTCCTCAAAGAGCAGGAC
16312 ACCTTTTAAA
Statistics
Matches: 76, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
93 1 0.01
94 75 0.99
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (94 bp):
CACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTCCTAG
TCCTCAAAGAGCAGGACGCTCTCTCCTTT
Found at i:16299 original size:55 final size:54
Alignment explanation
Indices: 16239--16428 Score: 245
Period size: 55 Copynumber: 3.4 Consensus size: 54
16229 TCACCTTTTT
*
16239 GTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCA
1 GTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCAC-TTTCA
* * *
16294 GTCCTCAAAGAGCAGGACACCTTTTAAAGCCCACACAAGTTGATGGCACCTTCA
1 GTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCA
* * *
16348 GTCCTCAAAAAGTAGGACGCTTTCTCTTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTA
1 GTCCTCAAAGAGCAGGACG----C-C-TTTTAAAGCCCACACAAGTTGGTGGCACTTTC-A
16409 GTCCTCAAAGAGCAGGACGC
1 GTCCTCAAAGAGCAGGACGC
16429 TCTCTCCTTT
Statistics
Matches: 116, Mismatches: 12, Indels: 12
0.83 0.09 0.09
Matches are distributed among these distances:
54 20 0.17
55 46 0.40
57 1 0.01
58 1 0.01
59 1 0.01
60 29 0.25
61 18 0.16
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (54 bp):
GTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCA
Found at i:16390 original size:209 final size:208
Alignment explanation
Indices: 16028--17044 Score: 1188
Period size: 209 Copynumber: 4.9 Consensus size: 208
16018 TGGCGCTTCC
16028 TAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACC-TTCAGTCCTCAA
1 TAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAA
* *
16092 AGAGCAGGATGCCTTCTCCTTTTAAAGCCCACATAAGTTGGTGGCACCTTTCAGTCCTCAAAGAG
66 AGAGCAGGA------CGCCTTTTAAAGCCCACACAAGTTGGTGGCACC-TTCAGTCCTCAAAGAG
16157 CAGGA-C--TC-C-TTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGA
124 CAGGAGCTTTCTCTTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGA
16217 CGCTCTCTCCTTTCACCTTT
189 CGCTCTCTCCTTTCACCTTT
* *
16237 TTGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAA
1 TAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAA
* * * *
16302 AGAGCAGGACACCTTTTAAAGCCCACACAAGTTGATGGCACCTTCAGTCCTCAAAAAGTAGGACG
66 AGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGA-G
16367 CTTTCTCTTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACGCTCT
130 CTTTCTCTTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACGCTCT
*
16432 CTCCTTTCGCCTTT
195 CTCCTTTCACCTTT
* * *
16446 TTGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTTCTCAA
1 TAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAA
* *
16511 AGAGCAGGACGCCTTTTAAAGCCCAAACAAGTTGGTGGCA-CTTCCTAGTCCTCAAAGAGTAGGA
66 AGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTT-C-AGTCCTCAAAGAGCAGGA
* *** * * * * **
16575 CGCTCTCTCCTTTCACCTTTTTGTCCTCA-AAG--AGTAGG-AC-GCCT--T--TCAAAGCCCA-
129 -GCTTTCT-CTTT----TTAAAGCCCACACAAGTTGGT-GGCACTTCCTAGTCCTCAAAGAGCAG
* *** ** ***
16630 CAC-AAGT-TGGTGGAACCTTT
187 GACGCTCTCTCCTTTCACCTTT
* * * * * *
16650 CAGTCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACACGAGTTGGTGGCACCCTCCAGTCCTCAA
1 TAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAA
* * *
16715 AGAGCAGGACGCCTGTCAAAGCCCACAAAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGA-
66 AGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACC-TTCAGTCCTCAAAGAGCAGGAG
* *
16779 --TGC-C-TTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGTAGGACGCTCT
130 CTTTCTCTTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACGCTCT
*
16840 CTCCTTTCACCCTT
195 CTCCTTTCACCTTT
*
16854 TAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCATACAAGTTGGTGGCACCTTT-AGTCCTCAA
1 TAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAA
*
16918 AGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGATG
66 AGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGA-G
* * * * *
16983 CTTTCT-TTTTGCAAATCCCACACTAGTTGGTGGCATCTTTC-AGTCCTCAAAGAGCATGACGC
130 CTTTCTCTTTT-TAAAGCCCACACAAGTTGGTGGCA-CTTCCTAGTCCTCAAAGAGCAGGACGC
17045 CTTTTCTTTT
Statistics
Matches: 686, Mismatches: 85, Indels: 75
0.81 0.10 0.09
Matches are distributed among these distances:
193 7 0.01
194 3 0.00
195 2 0.00
196 4 0.01
197 5 0.01
198 1 0.00
199 1 0.00
200 1 0.00
201 7 0.01
202 23 0.03
203 69 0.10
204 203 0.30
205 4 0.01
206 6 0.01
207 13 0.02
208 44 0.06
209 225 0.33
210 45 0.07
211 7 0.01
212 4 0.01
213 2 0.00
214 3 0.00
215 7 0.01
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (208 bp):
TAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAA
AGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGAGC
TTTCTCTTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACGCTCTC
TCCTTTCACCTTT
Found at i:16500 original size:264 final size:270
Alignment explanation
Indices: 15453--16834 Score: 1095
Period size: 264 Copynumber: 5.1 Consensus size: 270
15443 TCTTTTAGCC
* * *
15453 CTTCC-AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGAACCTT
1 CTTCCTAGTCCTCAAAGAGCAGGACACC-TTT-C----AAAGCCCACACAAGTTGATGGCACCTT
* * * *
15517 CAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAG
60 CAGTCCTCAAAAAGCAGGACGCC-TTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCCAG
* * * *
15582 TCCTCAAAGAGCAGGACGCCTCTCAAAGCCCACACAAGTTGGTGGCATTTTCC-AGTCTTCAAAG
124 TCCTCAAAGAGCAGGACTCCT-T---A-CCCACAC-A-TT-GTCGCA-CTTCCTAGTCCTCAAAG
* * * *
15646 AGCAGGACGCCTCTTAAAGCCCACACAGGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACAC
180 AGCAGGACG-CT-TCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGC
15711 CTTTTTTTTTTAAAGCCCACACAAGTTGGTGGCA
243 C------TTTTAAAGCCCACACAAGTTGGTGGCA
** * * *
15745 -TTTTTCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTCGGTGGCACCTTTCAAT
1 CTTCCT-AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGATGGCACC-TTCAGT
* * *
15809 CTTCAAAGAGCAGGACG------CCTTTTAAAGCCCACACAAGTTGGTGGCACCTT-TAGTCCTC
64 CCTCAAAAAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTC
* * * *
15867 AAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGAACCTT-C-AGCCCTCAAAGAGCAG
129 AAAGAGCAGGACTCC--TT--A-CCCACAC-A-TT-GTCGCA-CTTCCTAGTCCTCAAAGAGCAG
*
15930 GACGCCTTCTCCATTCAAAGCCCACACAAGTTGGTGGCACC-TTCAGTCCTCAAAGAGCAGGACT
185 GACG-------C-TTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACG
* *
15994 CCTTTTAAAGCCAACACAAGTTGGTGGCG
242 CCTTTTAAAGCCCACACAAGTTGGTGGCA
* *
16023 CTTCCTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCAGTCC
1 CTTCCTAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGATGGCACCTTCAGTCC
* * * *
16088 TCAAAGAGCAGGATGCCTTCTCCTTTTAAAGCCCACATAAGTTGGTGGCACCTTTCAGTCCTCAA
66 TCAAAAAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAA
*
16153 AGAGCAGGACTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGAC
131 AGAGCAGGACTCC--TT--A-CCCACAC-A-TT-GTCGCACTTCCTAGTCCTCAAAGAGCAGGAC
* * ** *
16218 GC-T-----CTCTC-C---TT--T--CACCTTTTTGTCCTCAAAGAGCAGGACGCCTTTCAAAGC
188 GCTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTAAAGC
16269 CCACACAAGTTGGTGGCA
253 CCACACAAGTTGGTGGCA
* *
16287 CTT-TTCAGTCCTCAAAGAGCAGGACACCTTTTAAAGCCCACACAAGTTGATGGCACCTTCAGTC
1 CTTCCT-AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGATGGCACCTTCAGTC
* * *
16351 CTCAAAAAGTAGGACGCTTTCTCTTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCTAGTCCTC
65 CTCAAAAAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCC-AGTCCTC
* * * * * *
16415 AAAGAGCAGGAC-GC-T-CTCTC-C-TT-TCGC-CTT-TTTGTCCTCAAAGAGCAGGATGCCTTT
129 AAAGAGCAGGACTCCTTACCCACACATTGTCGCACTTCCTAGTCCTCAAAGAGCAGGACG-C-TT
* *
16472 CAAAGCCCACACAAGTTGGTGGCACCTTTCAGTTCTCAAAGAGCAGGACGCCTTTTAAAGCCCAA
192 CAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCAC
16537 ACAAGTTGGTGGCA
257 ACAAGTTGGTGGCA
* * * * **
16551 CTTCCTAGTCCTCAAAGAGTAGGAC-GC--T-----CTCTC-C---TT--T--CACCTTTTTGTC
1 CTTCCTAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGATGGCACC-TTCAGTC
* * * *
16600 CTCAAAGAGTAGGACGCCTT-T-C----AAAGCCCACACAAGTTGGTGGAACCTTTCAGTCCTCA
65 CTCAAAAAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCA
* *
16659 AAGAGCAGGA-TGCCTTTTAAAGCCCACACGAGTTGGTGGCACCCTCC-AGTCCTCAAAGAGCAG
130 AAGAGCAGGACT-CC--TT--A-CCCACAC-A-TT-GTCGCA-CTTCCTAGTCCTCAAAGAGCAG
* *
16722 GACGCCTGTCAAAGCCCACAAAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCCTTTT
185 GACG-CT-TCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTT
16787 AAAGCCCACACAAGTTGGTGGCA
248 AAAGCCCACACAAGTTGGTGGCA
*
16810 CTTCCTAGTCCTCAAAGAGTAGGAC
1 CTTCCTAGTCCTCAAAGAGCAGGAC
16835 GCTCTCTCCT
Statistics
Matches: 938, Mismatches: 89, Indels: 159
0.79 0.08 0.13
Matches are distributed among these distances:
243 40 0.04
244 5 0.01
247 1 0.00
248 24 0.03
249 27 0.03
250 4 0.00
251 4 0.00
252 5 0.01
255 4 0.00
256 9 0.01
257 4 0.00
258 1 0.00
259 123 0.13
260 3 0.00
261 1 0.00
262 1 0.00
263 11 0.01
264 241 0.26
265 2 0.00
267 2 0.00
270 1 0.00
271 3 0.00
276 1 0.00
277 20 0.02
278 75 0.08
279 22 0.02
280 46 0.05
281 33 0.04
282 1 0.00
283 35 0.04
284 71 0.08
285 46 0.05
286 1 0.00
287 23 0.02
288 21 0.02
291 3 0.00
292 3 0.00
293 21 0.02
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (270 bp):
CTTCCTAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGATGGCACCTTCAGTCC
TCAAAAAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAA
AGAGCAGGACTCCTTACCCACACATTGTCGCACTTCCTAGTCCTCAAAGAGCAGGACGCTTCAAA
GCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAA
GTTGGTGGCA
Found at i:16511 original size:55 final size:55
Alignment explanation
Indices: 16448--16577 Score: 190
Period size: 55 Copynumber: 2.4 Consensus size: 55
16438 TCGCCTTTTT
* * *
16448 GTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC-A
1 GTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCAAACAAGTTGGTGGCA-CTTCCTA
* *
16503 GTTCTCAAAGAGCAGGACGCCTTTTAAAGCCCAAACAAGTTGGTGGCACTTCCTA
1 GTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCAAACAAGTTGGTGGCACTTCCTA
*
16558 GTCCTCAAAGAGTAGGACGC
1 GTCCTCAAAGAGCAGGACGC
16578 TCTCTCCTTT
Statistics
Matches: 67, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
54 4 0.06
55 63 0.94
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.22
Consensus pattern (55 bp):
GTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCAAACAAGTTGGTGGCACTTCCTA
Found at i:16592 original size:94 final size:94
Alignment explanation
Indices: 16494--16668 Score: 253
Period size: 94 Copynumber: 1.9 Consensus size: 94
16484 AAGTTGGTGG
* * *
16494 CACCTTTCAGTTCTCAAAGAGCAGGACGCCTTTTAAAGCCCAAACAAGTTGGTGGCA-CTTCCTA
1 CACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCAAACAAGTTGGTGGAACCTTCC-A
*
16558 GTCCTCAAAGAGTAGGACGCTCTCTCCTTT
65 GTCCTCAAAGAGCAGGACGCTCTCTCCTTT
** * * *
16588 CACCTTTTTGTCCTCAAAGAGTAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGAACCTTTCAG
1 CACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCAAACAAGTTGGTGGAACCTTCCAG
16653 TCCTCAAAGAGCAGGA
66 TCCTCAAAGAGCAGGA
16669 TGCCTTTTAA
Statistics
Matches: 71, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
94 67 0.94
95 4 0.06
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (94 bp):
CACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCAAACAAGTTGGTGGAACCTTCCAG
TCCTCAAAGAGCAGGACGCTCTCTCCTTT
Found at i:16656 original size:55 final size:55
Alignment explanation
Indices: 16597--16836 Score: 347
Period size: 55 Copynumber: 4.4 Consensus size: 55
16587 TCACCTTTTT
* * *
16597 GTCCTCAAAGAGTAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGAACCTTTCA
1 GTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCCA
* * * *
16652 GTCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACACGAGTTGGTGGCACCCTCCA
1 GTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCCA
* * *
16707 GTCCTCAAAGAGCAGGACGCCTGTCAAAGCCCACAAAAGTTGGTGGCACCTTTCA
1 GTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCCA
* *
16762 GTCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCTA
1 GTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCC-A
*
16817 GTCCTCAAAGAGTAGGACGC
1 GTCCTCAAAGAGCAGGACGC
16837 TCTCTCCTTT
Statistics
Matches: 163, Mismatches: 21, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
54 4 0.02
55 159 0.98
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.20
Consensus pattern (55 bp):
GTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCCA
Found at i:16790 original size:110 final size:110
Alignment explanation
Indices: 16597--16836 Score: 410
Period size: 110 Copynumber: 2.2 Consensus size: 110
16587 TCACCTTTTT
* *
16597 GTCCTCAAAGAGTAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGAACCTTTCAGTCCTCAAAG
1 GTCCTCAAAGAGTAGGACGCCTGTCAAAGCCCACAAAAGTTGGTGGAACCTTTCAGTCCTCAAAG
*
16662 AGCAGGATGCCTTTTAAAGCCCACACGAGTTGGTGGCACCCTCC-A
66 AGCAGGATGCCTTTTAAAGCCCACACAAGTTGGTGGCA-CCTCCTA
* *
16707 GTCCTCAAAGAGCAGGACGCCTGTCAAAGCCCACAAAAGTTGGTGGCACCTTTCAGTCCTCAAAG
1 GTCCTCAAAGAGTAGGACGCCTGTCAAAGCCCACAAAAGTTGGTGGAACCTTTCAGTCCTCAAAG
*
16772 AGCAGGATGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTA
66 AGCAGGATGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTCCTA
16817 GTCCTCAAAGAGTAGGACGC
1 GTCCTCAAAGAGTAGGACGC
16837 TCTCTCCTTT
Statistics
Matches: 122, Mismatches: 7, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
109 4 0.03
110 118 0.97
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.20
Consensus pattern (110 bp):
GTCCTCAAAGAGTAGGACGCCTGTCAAAGCCCACAAAAGTTGGTGGAACCTTTCAGTCCTCAAAG
AGCAGGATGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTCCTA
Found at i:16913 original size:54 final size:56
Alignment explanation
Indices: 16850--17103 Score: 300
Period size: 54 Copynumber: 4.4 Consensus size: 56
16840 CTCCTTTCAC
*
16850 CCTTTAGTCCTCAAAGAGCAGGACGC-C-TTTCAAAGCCCATACAAGTTGGTGGCA
1 CCTTTAGTCCTCAAAGAGCAGGACGCTCTTTTCAAAGCCCACACAAGTTGGTGGCA
16904 CCTTTAGTCCTCAAAGAGCAGGACGC-C-TTTCAAAGCCCACACAAGTTGGTGGCA
1 CCTTTAGTCCTCAAAGAGCAGGACGCTCTTTTCAAAGCCCACACAAGTTGGTGGCA
* * * *
16958 CCTTCAGTCCTCAAAGAGCAGGATGCTTTCTTTTTGCAAATCCCACACTAGTTGGTGGCA
1 CCTTTAGTCCTCAAAGAGCAGGACGC--TC-TTTT-CAAAGCCCACACAAGTTGGTGGCA
* * * *
17018 TCTTTCAGTCCTCAAAGAGCATGACGCCTTTTCTTTTCAAAGACCACACGAGTTGGTGGCA
1 CCTTT-AGTCCTCAAAGAGCAGGACG-C---TCTTTTCAAAGCCCACACAAGTTGGTGGCA
*
17079 CTTTTCAGTCCTCAAAGAGCAGGAC
1 CCTTT-AGTCCTCAAAGAGCAGGAC
17104 ACACTTCTTT
Statistics
Matches: 176, Mismatches: 15, Indels: 11
0.87 0.07 0.05
Matches are distributed among these distances:
54 77 0.44
57 1 0.01
59 3 0.02
60 25 0.14
61 61 0.35
62 5 0.03
63 4 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (56 bp):
CCTTTAGTCCTCAAAGAGCAGGACGCTCTTTTCAAAGCCCACACAAGTTGGTGGCA
Found at i:17330 original size:40 final size:41
Alignment explanation
Indices: 17230--17333 Score: 113
Period size: 42 Copynumber: 2.5 Consensus size: 41
17220 ATGAGACGTA
**
17230 CTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTTTC
1 CTCTTTTT--CTTTGTCCTCAAGAAGCAGGACACTTT-CTCATC
* * *
17274 TTCTTTTCCTTTGTCCTCAAGGAGCAGGAC-CTATT-TCATC
1 CTCTTTTTCTTTGTCCTCAAGAAGCAGGACACT-TTCTCATC
17314 CTCTTTTTCTTTGTCCTCAA
1 CTCTTTTTCTTTGTCCTCAA
17334 AAAAGTGGGA
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
40 21 0.40
41 2 0.04
42 23 0.44
44 6 0.12
ACGTcount: A:0.16, C:0.29, G:0.12, T:0.43
Consensus pattern (41 bp):
CTCTTTTTCTTTGTCCTCAAGAAGCAGGACACTTTCTCATC
Found at i:17772 original size:6 final size:6
Alignment explanation
Indices: 17763--17790 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
17753 GTGAAAATCA
17763 AAAATT AAAATT AAAATT AAAATT AAAA
1 AAAATT AAAATT AAAATT AAAATT AAAA
17791 AAAATAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (6 bp):
AAAATT
Found at i:17802 original size:18 final size:17
Alignment explanation
Indices: 17763--17795 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
17753 GTGAAAATCA
17763 AAAATTAAAATTAAAATT
1 AAAATTAAAA-TAAAATT
17781 AAAATTAAAA-AAAAT
1 AAAATTAAAATAAAAT
17796 AATAAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
18 10 0.67
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (17 bp):
AAAATTAAAATAAAATT
Found at i:17819 original size:13 final size:14
Alignment explanation
Indices: 17803--17937 Score: 53
Period size: 14 Copynumber: 11.2 Consensus size: 14
17793 AATAATAAAA
17803 AATGA-AGGCATGG
1 AATGATAGGCATGG
*
17816 AATGATGGGCATGG
1 AATGATAGGCATGG
*
17830 AAT-ATA---A--A
1 AATGATAGGCATGG
17838 AATGA-AGGCATGG
1 AATGATAGGCATGG
*
17851 AATGATGGGCATGG
1 AATGATAGGCATGG
*
17865 AAT-ATA---A--A
1 AATGATAGGCATGG
17873 AATGA-AGGCATGG
1 AATGATAGGCATGG
*
17886 AATGATGGGCATGG
1 AATGATAGGCATGG
*
17900 AAT-ATA---A--A
1 AATGATAGGCATGG
17908 AATGA-AGGCATGG
1 AATGATAGGCATGG
*
17921 AATGATGGGCATGG
1 AATGATAGGCATGG
17935 AAT
1 AAT
17938 ATAAAAATGA
Statistics
Matches: 87, Mismatches: 13, Indels: 43
0.61 0.09 0.30
Matches are distributed among these distances:
8 12 0.14
9 3 0.03
10 3 0.03
11 3 0.03
13 26 0.30
14 40 0.46
ACGTcount: A:0.41, C:0.06, G:0.33, T:0.20
Consensus pattern (14 bp):
AATGATAGGCATGG
Found at i:17841 original size:35 final size:35
Alignment explanation
Indices: 17796--18033 Score: 441
Period size: 35 Copynumber: 6.9 Consensus size: 35
17786 TAAAAAAAAT
17796 AATA-AAAAATGAAGGCATGGAATGATGGGCATGG
1 AATATAAAAATGAAGGCATGGAATGATGGGCATGG
17830 AATATAAAAATGAAGGCATGGAATGATGGGCATGG
1 AATATAAAAATGAAGGCATGGAATGATGGGCATGG
17865 AATATAAAAATGAAGGCATGGAATGATGGGCATGG
1 AATATAAAAATGAAGGCATGGAATGATGGGCATGG
17900 AATATAAAAATGAAGGCATGGAATGATGGGCATGG
1 AATATAAAAATGAAGGCATGGAATGATGGGCATGG
17935 AATATAAAAATGAAGGCATGG-A--ATGGGCATGG
1 AATATAAAAATGAAGGCATGGAATGATGGGCATGG
17967 AATATAAAAATGAAGGCATGGAATGATGGGCATGG
1 AATATAAAAATGAAGGCATGGAATGATGGGCATGG
18002 AATA-AAAAATGAAGGCATGGAATGATGGGCAT
1 AATATAAAAATGAAGGCATGGAATGATGGGCAT
18034 AAAAATGAAA
Statistics
Matches: 200, Mismatches: 0, Indels: 8
0.96 0.00 0.04
Matches are distributed among these distances:
32 31 0.16
33 1 0.00
34 33 0.17
35 135 0.68
ACGTcount: A:0.44, C:0.06, G:0.31, T:0.19
Consensus pattern (35 bp):
AATATAAAAATGAAGGCATGGAATGATGGGCATGG
Found at i:17848 original size:21 final size:21
Alignment explanation
Indices: 17823--17958 Score: 98
Period size: 21 Copynumber: 7.5 Consensus size: 21
17813 TGGAATGATG
17823 GGCATGGAATATAAAAATGAA
1 GGCATGGAATATAAAAATGAA
*
17844 GGCATGG-A-AT---GATG--
1 GGCATGGAATATAAAAATGAA
17858 GGCATGGAATATAAAAATGAA
1 GGCATGGAATATAAAAATGAA
*
17879 GGCATGG-A-AT---GATG--
1 GGCATGGAATATAAAAATGAA
17893 GGCATGGAATATAAAAATGAA
1 GGCATGGAATATAAAAATGAA
*
17914 GGCATGG-A-AT---GATG--
1 GGCATGGAATATAAAAATGAA
17928 GGCATGGAATATAAAAATGAA
1 GGCATGGAATATAAAAATGAA
17949 GGCATGGAAT
1 GGCATGGAAT
17959 GGGCATGGAA
Statistics
Matches: 88, Mismatches: 6, Indels: 42
0.65 0.04 0.31
Matches are distributed among these distances:
14 21 0.24
15 3 0.03
16 15 0.17
19 15 0.17
20 3 0.03
21 31 0.35
ACGTcount: A:0.43, C:0.06, G:0.31, T:0.20
Consensus pattern (21 bp):
GGCATGGAATATAAAAATGAA
Found at i:19286 original size:27 final size:28
Alignment explanation
Indices: 19255--19327 Score: 98
Period size: 27 Copynumber: 2.6 Consensus size: 28
19245 TTTCACAATC
19255 GGGGATACTCCAACCCCGTTA-ATCATC-A
1 GGGGATACTCCAACCCCGTTATATC--CGA
*
19283 -GGGATACTCCAACCCCGTTATTTCCGA
1 GGGGATACTCCAACCCCGTTATATCCGA
19310 GGGGATACTCCAACCCCG
1 GGGGATACTCCAACCCCG
19328 GCTTTATTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 6
0.85 0.02 0.12
Matches are distributed among these distances:
26 1 0.02
27 21 0.51
28 19 0.46
ACGTcount: A:0.25, C:0.34, G:0.21, T:0.21
Consensus pattern (28 bp):
GGGGATACTCCAACCCCGTTATATCCGA
Found at i:19374 original size:79 final size:79
Alignment explanation
Indices: 19283--19615 Score: 567
Period size: 79 Copynumber: 4.2 Consensus size: 79
19273 TTAATCATCA
* *
19283 GGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTTTTAAAACATCA
1 GGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCA
19348 ATTTTTCATAATCG
66 ATTTTTCATAATCG
* ** * *
19362 GGGATACTCCAACCCCGTTATTTCTGAGGGGATACAGCAACCCTGGTTTTATCTCTAAAACATCA
1 GGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCA
19427 ATTTTTCATAATCG
66 ATTTTTCATAATCG
* * *
19441 GGGATACTCCAATCTCGTTATTTCCGAGGGGCTACTCCAACCCCGGTTTTATTTCTAAAACATCA
1 GGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCA
19506 ATTTTTCATAATCG
66 ATTTTTCATAATCG
*
19520 GGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCA
1 GGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCA
19585 ATTTTTCATAATCG
66 ATTTTTCATAATCG
19599 GGGATACTCCAACCCCG
1 GGGATACTCCAACCCCG
19616 ATTTTATTTT
Statistics
Matches: 235, Mismatches: 19, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
79 235 1.00
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.32
Consensus pattern (79 bp):
GGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCA
ATTTTTCATAATCG
Found at i:19610 original size:51 final size:51
Alignment explanation
Indices: 19547--19693 Score: 163
Period size: 51 Copynumber: 2.8 Consensus size: 51
19537 TTATTTTCGA
19547 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTT-CATAATC
1 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACA-CAATTTTTCCATAATC
* * * **
19598 GGGGATACTCCAACCCCGATTTTATTTTTCAGAACACCGTTTTTCCATAATC
1 GGGGATACTCCAACCCCGGTTTTATTTCT-AAAACACAATTTTTCCATAATC
* * * *
19650 GGGGATACTCTAGCCCC-GTTGTTATCTCTAAAATACTAATTTTT
1 GGGGATACTCCAACCCCGGTT-TTATTTCTAAAACAC-AATTTTT
19694 TCTCGTCGGG
Statistics
Matches: 78, Mismatches: 14, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
51 40 0.51
52 38 0.49
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.36
Consensus pattern (51 bp):
GGGGATACTCCAACCCCGGTTTTATTTCTAAAACACAATTTTTCCATAATC
Found at i:19693 original size:52 final size:50
Alignment explanation
Indices: 19547--19693 Score: 154
Period size: 52 Copynumber: 2.9 Consensus size: 50
19537 TTATTTTCGA
19547 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACA-TCAATTTTTCATAATC
1 GGGGATACTCCAACCCC-GTTTTATTTCTAAAACACT-AATTTTTCATAATC
* * **
19598 GGGGATACTCCAACCCCGATTTTATTTTTCAGAACAC-CGTTTTTCCATAATC
1 GGGGATACTCCAACCCCG-TTTTATTTCT-AAAACACTAATTTTT-CATAATC
* * * *
19650 GGGGATACTCTAGCCCCGTTGTTATCTCTAAAATACTAATTTTT
1 GGGGATACTCCAACCCCGTT-TTATTTCTAAAACACTAATTTTT
19694 TCTCGTCGGG
Statistics
Matches: 78, Mismatches: 12, Indels: 11
0.77 0.12 0.11
Matches are distributed among these distances:
50 1 0.01
51 38 0.49
52 39 0.50
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.36
Consensus pattern (50 bp):
GGGGATACTCCAACCCCGTTTTATTTCTAAAACACTAATTTTTCATAATC
Found at i:21116 original size:6 final size:6
Alignment explanation
Indices: 21101--21150 Score: 52
Period size: 6 Copynumber: 8.3 Consensus size: 6
21091 TTTATGTGTA
21101 TTTT-T TTTTGT TTTTGT TTTTGT TTTT-T AGTTTTGT TTTT-T TTTGTGT
1 TTTTGT TTTTGT TTTTGT TTTTGT TTTTGT --TTTTGT TTTTGT TTT-TGT
21149 TT
1 TT
21151 GCACTTTTGA
Statistics
Matches: 39, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
5 9 0.23
6 22 0.56
7 7 0.18
8 1 0.03
ACGTcount: A:0.02, C:0.00, G:0.14, T:0.84
Consensus pattern (6 bp):
TTTTGT
Found at i:21120 original size:12 final size:11
Alignment explanation
Indices: 21086--21150 Score: 67
Period size: 12 Copynumber: 5.3 Consensus size: 11
21076 GCTCTTTTCC
21086 TTTTTTTTATGTG
1 TTTTTTTT-T-TG
21099 TATTTTTTTTTG
1 T-TTTTTTTTTG
21111 TTTTTGTTTTTG
1 TTTTT-TTTTTG
21123 TTTTTTAGTTTTG
1 TTTTTT--TTTTG
21136 TTTTTTTTTGTG
1 TTTTTTTTT-TG
21148 TTT
1 TTT
21151 GCACTTTTGA
Statistics
Matches: 47, Mismatches: 0, Indels: 11
0.81 0.00 0.19
Matches are distributed among these distances:
11 8 0.17
12 19 0.40
13 13 0.28
14 7 0.15
ACGTcount: A:0.05, C:0.00, G:0.14, T:0.82
Consensus pattern (11 bp):
TTTTTTTTTTG
Found at i:22365 original size:13 final size:13
Alignment explanation
Indices: 22347--22374 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
22337 ATACAAAGAT
22347 CAATGTATCGATA
1 CAATGTATCGATA
22360 CAATGTATCGATA
1 CAATGTATCGATA
22373 CA
1 CA
22375 TTGAGTAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:22390 original size:33 final size:33
Alignment explanation
Indices: 22329--22394 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
22319 AAATTCCCAG
*
22329 ATGTATCGATACAAAGATCAATGTATCGATACA
1 ATGTATCGATACAAAGATCAATGAATCGATACA
**
22362 ATGTATCGATACATTGAGT-AATGAATCGATACA
1 ATGTATCGATACAAAGA-TCAATGAATCGATACA
22395 TTTCCTTGGC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 28 0.97
34 1 0.03
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.29
Consensus pattern (33 bp):
ATGTATCGATACAAAGATCAATGAATCGATACA
Found at i:22450 original size:19 final size:19
Alignment explanation
Indices: 22426--22488 Score: 66
Period size: 19 Copynumber: 3.6 Consensus size: 19
22416 AGCGATACAT
22426 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
*
22445 TGTATC-A-A-TACA--T-
1 TGTATCGATACAACACTTA
*
22458 TGTATTGATACAACACTTA
1 TGTATCGATACAACACTTA
22477 TGTATCGATACA
1 TGTATCGATACA
22489 GTTACTGTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 12
0.68 0.08 0.24
Matches are distributed among these distances:
13 5 0.15
14 2 0.06
15 1 0.03
16 6 0.18
17 1 0.03
18 2 0.06
19 17 0.50
ACGTcount: A:0.37, C:0.17, G:0.11, T:0.35
Consensus pattern (19 bp):
TGTATCGATACAACACTTA
Found at i:22461 original size:32 final size:32
Alignment explanation
Indices: 22420--22488 Score: 120
Period size: 32 Copynumber: 2.2 Consensus size: 32
22410 CTTTGTAGCG
22420 ATACATTGTATCGATACAACACTTATGTATCA
1 ATACATTGTATCGATACAACACTTATGTATCA
* *
22452 ATACATTGTATTGATACAACACTTATGTATCG
1 ATACATTGTATCGATACAACACTTATGTATCA
22484 ATACA
1 ATACA
22489 GTTACTGTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.35
Consensus pattern (32 bp):
ATACATTGTATCGATACAACACTTATGTATCA
Found at i:24677 original size:22 final size:22
Alignment explanation
Indices: 24652--24694 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
24642 TACATCATGT
*
24652 ATTTTTTACTTGAAAAACATTG
1 ATTTATTACTTGAAAAACATTG
*
24674 ATTTATTGCTTGAAAAACATT
1 ATTTATTACTTGAAAAACATT
24695 CAGACTTGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.37, C:0.09, G:0.09, T:0.44
Consensus pattern (22 bp):
ATTTATTACTTGAAAAACATTG
Found at i:27165 original size:19 final size:19
Alignment explanation
Indices: 27141--27195 Score: 74
Period size: 19 Copynumber: 2.8 Consensus size: 19
27131 ATATAGTCGA
**
27141 AATGTATCGATACAATTTT
1 AATGTATCGATACAATTGC
27160 AATGTATCGATACAAATTGC
1 AATGTATCGATAC-AATTGC
*
27180 ATTGTATCGATACAAT
1 AATGTATCGATACAAT
27196 CTAGAAAATC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
19 16 0.50
20 16 0.50
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36
Consensus pattern (19 bp):
AATGTATCGATACAATTGC
Found at i:27185 original size:20 final size:20
Alignment explanation
Indices: 27141--27194 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
27131 ATATAGTCGA
**
27141 AATGTATCGATAC-AATTTT
1 AATGTATCGATACAAATTGC
27160 AATGTATCGATACAAATTGC
1 AATGTATCGATACAAATTGC
*
27180 ATTGTATCGATACAA
1 AATGTATCGATACAA
27195 TCTAGAAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
19 13 0.42
20 18 0.58
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACAAATTGC
Found at i:27413 original size:12 final size:12
Alignment explanation
Indices: 27396--27424 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
27386 CAAATATAGG
27396 ATCAACATCAAA
1 ATCAACATCAAA
27408 ATCAACATCAAA
1 ATCAACATCAAA
27420 ATCAA
1 ATCAA
27425 TTTTCAAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.59, C:0.24, G:0.00, T:0.17
Consensus pattern (12 bp):
ATCAACATCAAA
Found at i:31115 original size:21 final size:21
Alignment explanation
Indices: 31089--31137 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
31079 ATGCAAGTTT
* *
31089 TTATTTTTCTTTGTTAATTCA
1 TTATTTTTATTAGTTAATTCA
*
31110 TTATTTTTATTAGTTAATTCT
1 TTATTTTTATTAGTTAATTCA
31131 TTATTTT
1 TTATTTT
31138 CTTCTTGCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.20, C:0.06, G:0.04, T:0.69
Consensus pattern (21 bp):
TTATTTTTATTAGTTAATTCA
Found at i:31649 original size:18 final size:18
Alignment explanation
Indices: 31626--31665 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
31616 CATAGCCATT
*
31626 TCTTCATCCGAGTCAACC
1 TCTTCATCCCAGTCAACC
31644 TCTTCATCCCAGTCAACC
1 TCTTCATCCCAGTCAACC
31662 TCTT
1 TCTT
31666 ATTCATCATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.20, C:0.40, G:0.07, T:0.33
Consensus pattern (18 bp):
TCTTCATCCCAGTCAACC
Found at i:33400 original size:13 final size:13
Alignment explanation
Indices: 33382--33438 Score: 51
Period size: 13 Copynumber: 3.8 Consensus size: 13
33372 TAAAGCAATT
33382 TGTATCGATACAA
1 TGTATCGATACAA
33395 TGTATCGATACTTAGCAA
1 TGTATCG--A--TA-CAA
33413 TTTGTATCGATACAA
1 --TGTATCGATACAA
33428 TGTATCGATAC
1 TGTATCGATAC
33439 TTAGCAATTT
Statistics
Matches: 37, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
13 18 0.49
15 4 0.11
16 2 0.05
17 2 0.05
18 4 0.11
20 7 0.19
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:33412 original size:33 final size:33
Alignment explanation
Indices: 33375--33459 Score: 170
Period size: 33 Copynumber: 2.6 Consensus size: 33
33365 ATCGATATAA
33375 AGCAATTTGTATCGATACAATGTATCGATACTT
1 AGCAATTTGTATCGATACAATGTATCGATACTT
33408 AGCAATTTGTATCGATACAATGTATCGATACTT
1 AGCAATTTGTATCGATACAATGTATCGATACTT
33441 AGCAATTTGTATCGATACA
1 AGCAATTTGTATCGATACA
33460 TCTGGATGTG
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 52 1.00
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.35
Consensus pattern (33 bp):
AGCAATTTGTATCGATACAATGTATCGATACTT
Found at i:33420 original size:20 final size:20
Alignment explanation
Indices: 33395--33458 Score: 79
Period size: 20 Copynumber: 3.5 Consensus size: 20
33385 ATCGATACAA
33395 TGTATCGATACTTAGCAATT
1 TGTATCGATACTTAGCAATT
33415 TGTATCG--A--TA-CAA--
1 TGTATCGATACTTAGCAATT
33428 TGTATCGATACTTAGCAATT
1 TGTATCGATACTTAGCAATT
33448 TGTATCGATAC
1 TGTATCGATAC
33459 ATCTGGATGT
Statistics
Matches: 37, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
13 7 0.19
15 4 0.11
16 2 0.05
17 2 0.05
18 4 0.11
20 18 0.49
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.38
Consensus pattern (20 bp):
TGTATCGATACTTAGCAATT
Found at i:34215 original size:2 final size:2
Alignment explanation
Indices: 34208--34242 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
34198 AGTAATAGAA
34208 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
34243 CATACATAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:35899 original size:167 final size:164
Alignment explanation
Indices: 35680--36163 Score: 469
Period size: 167 Copynumber: 2.9 Consensus size: 164
35670 CAAAAAATAA
* * * *
35680 AAAATAAATTGACTTTTGCAAAACTGATTTAATGAT-AGTTTAATAATAATATTAGATGAATTTT
1 AAAATAAATT-AATTTTTCAAAACTGATTTAAT-ATGAG-TAAATAATAATATTTGATGAATTTT
**
35744 AAAAATATTAAACCGAGAAAAAATTTTTCGAAAATATTTACGGAGTAGAAAACTCTATTTTTCGA
63 AAAAAT-TTAAACCGAG-AAAAATCCTTCGAAAA-ATTTACGGAGTAGAAAACTCTATTTTTCGA
* *
35809 AAATAGGAGAATTTCAAAGAAAAAAGTTC-AAAACTTATG
125 AAATAGAAGAATTTCAAAGAAAAAAGTTCAAAAACTCATG
* *
35848 AAAATAAATTAATTTTTCAAAAATAATTTAATATGAGTAAAATAATAATATTTGATGAATTTTAA
1 AAAATAAATTAATTTTTCAAAACTGATTTAATATGAGT-AAATAATAATATTTGATGAATTTTAA
* * * * * * *
35913 AAATTAAAAACCAAGAAAAATCCCCTCAAAAACATTTATGGAGTAGAAAACTCCGCA-TTTT-GG
65 AAATT-TAAACCGAGAAAAAT-CCTTCGAAAA-ATTTACGGAGTAGAAAACT-C-TATTTTTCGA
* * *
35976 AAACAGAAAAATTTC-AAG-AAAAATTTCAAAAACTCATG
125 AAATAGAAGAATTTCAAAGAAAAAAGTTCAAAAACTCATG
* * * * * * *
36014 AAAATGAATGAGTTTTTTAAAACTGATTTACTGTGAATAAATAATAATATTTGATGAATTTTAAA
1 AAAATAAATTAATTTTTCAAAACTGATTTAATATGAGTAAATAATAATATTTGATGAATTTTAAA
* * * * * * *
36079 AATTTTAAATCGATG-AAAATCCTCCGAAACAATTTACGGAGAAGAAAACTATGTATTTCAAAAA
66 AA-TTTAAACCGA-GAAAAATCCTTCGAAA-AATTTACGGAGTAGAAAACTCTATTTTTCGAAAA
36143 TAGAAGGAATTTCAAAGAAAA
128 TAGAA-GAATTTCAAAGAAAA
36164 TCATTTACTT
Statistics
Matches: 255, Mismatches: 46, Indels: 31
0.77 0.14 0.09
Matches are distributed among these distances:
163 3 0.01
164 30 0.12
165 54 0.21
166 57 0.22
167 95 0.37
168 15 0.06
169 1 0.00
ACGTcount: A:0.49, C:0.09, G:0.12, T:0.31
Consensus pattern (164 bp):
AAAATAAATTAATTTTTCAAAACTGATTTAATATGAGTAAATAATAATATTTGATGAATTTTAAA
AATTTAAACCGAGAAAAATCCTTCGAAAAATTTACGGAGTAGAAAACTCTATTTTTCGAAAATAG
AAGAATTTCAAAGAAAAAAGTTCAAAAACTCATG
Found at i:35997 original size:12 final size:12
Alignment explanation
Indices: 35980--36004 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
35970 TTTTGGAAAC
35980 AGAAAAATTTCA
1 AGAAAAATTTCA
35992 AGAAAAATTTCA
1 AGAAAAATTTCA
36004 A
1 A
36005 AAACTCATGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.08, G:0.08, T:0.24
Consensus pattern (12 bp):
AGAAAAATTTCA
Found at i:39054 original size:157 final size:155
Alignment explanation
Indices: 38781--39153 Score: 379
Period size: 157 Copynumber: 2.4 Consensus size: 155
38771 AAAATGCGCT
* * * * * *
38781 TAGGGGATACCTTCGATGTAGAAGTATCCAATACCCCTAATGGACTTAAAAAGGATTATAGACAG
1 TAGGGGATATCTTCGACGTAGAAGTACCCGATACCCCTAAAGGACTTAAAAAGGATTATAAACAG
* * * * *
38846 GATGAACCTACCCTAAATACCCATCTTCGGCATAAAAGAAGACTAGGTGACAACCTAGGACCTGA
66 GATGAACCTACCCTAAATACCCACCTTCGACATAAAAGAAGACCAGATGACAACCTAAGACCTGA
38911 CTCTAAAAAAAATTATCAAAATACCCC
131 CTCT--AAAAAATTATCAAAATACCCC
* * **
38938 TAGGGGATATTTTCGACGTAGAAGTGCCCGATACCCCTAAAGGACTTAAAAAGGATTATAAATGG
1 TAGGGGATATCTTCGACGTAGAAGTACCCGATACCCCTAAAGGACTTAAAAAGGATTATAAACAG
* * ** * * * **
39003 GATGAACCTA-TCTGAAATACTCACCTTTTACGTAAAAGTAGACCCGATGACAACCTAAGAGTTG
66 GATGAACCTACCCT-AAATACCCACCTTCGACATAAAAGAAGACCAGATGACAACCTAAGACCTG
** ** * * *
39067 GTTCTGGAAATTTATGAAAATACCTC
130 ACTCTAAAAAATTATCAAAATACCCC
* * * * * *
39093 TAGGGGATATCTTCAACGTAAAAGTACTCGATACCCTTAAAAGACTTAAAAAGGATGATAA
1 TAGGGGATATCTTCGACGTAGAAGTACCCGATACCCCTAAAGGACTTAAAAAGGATTATAA
39154 CATGTGACTT
Statistics
Matches: 176, Mismatches: 39, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
155 69 0.39
156 2 0.01
157 105 0.60
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.24
Consensus pattern (155 bp):
TAGGGGATATCTTCGACGTAGAAGTACCCGATACCCCTAAAGGACTTAAAAAGGATTATAAACAG
GATGAACCTACCCTAAATACCCACCTTCGACATAAAAGAAGACCAGATGACAACCTAAGACCTGA
CTCTAAAAAATTATCAAAATACCCC
Found at i:39573 original size:148 final size:148
Alignment explanation
Indices: 39394--39661 Score: 362
Period size: 148 Copynumber: 1.8 Consensus size: 148
39384 TCCGAAAAGT
* * * * *
39394 TTCATTTTGTGCCTTAATGGAGTACCAAAAAGACAC-AAAACGTTTTGAAAATTTTCATACCCCT
1 TTCATTTCGTACCTTAATGGAGAACCAAAAAGACACGAAAA-GTTTTAAAAATTTTCATACCCCC
* * * *
39458 ATAGATGCCCATAGGAATATTA-ACAATTCTGAGAAATT-GGGATTATAATTTTTATTTAATTTA
65 ACAGATACCCATAGGAATATTAGA-AATTCTGAAAAATTCGGG-TGATAATTTTTATTTAATTTA
39521 ATTTTTTTATTTCTCAAAAAA
128 ATTTTTTTATTTCTCAAAAAA
* *
39542 TTCATTTCGTACCTTAATGGAGAACCGAAAAGATACGAAAAGTTTTAAAAATTTTCATACCCCCA
1 TTCATTTCGTACCTTAATGGAGAACCAAAAAGACACGAAAAGTTTTAAAAATTTTCATACCCCCA
* * *
39607 CGGATACCCATGGGAATATTAGAAATTCTGAAAAATTCTGGTGATAATTTTTATT
66 CAGATACCCATAGGAATATTAGAAATTCTGAAAAATTCGGGTGATAATTTTTATT
39662 GGATGAAAAA
Statistics
Matches: 103, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
148 96 0.93
149 7 0.07
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.36
Consensus pattern (148 bp):
TTCATTTCGTACCTTAATGGAGAACCAAAAAGACACGAAAAGTTTTAAAAATTTTCATACCCCCA
CAGATACCCATAGGAATATTAGAAATTCTGAAAAATTCGGGTGATAATTTTTATTTAATTTAATT
TTTTTATTTCTCAAAAAA
Found at i:40729 original size:10 final size:10
Alignment explanation
Indices: 40710--40738 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
40700 CTCAGCTTGA
40710 TTTT-TCTTT
1 TTTTCTCTTT
40719 TTTTCTCTTT
1 TTTTCTCTTT
40729 TTTTCTCTTT
1 TTTTCTCTTT
40739 CTTCCCACTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 4 0.21
10 15 0.79
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (10 bp):
TTTTCTCTTT
Found at i:42079 original size:13 final size:13
Alignment explanation
Indices: 42061--42085 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
42051 CAATTCTTCA
42061 TGTATCGATACAT
1 TGTATCGATACAT
42074 TGTATCGATACA
1 TGTATCGATACA
42086 ATGTGCCATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:42083 original size:33 final size:33
Alignment explanation
Indices: 42041--42105 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
42031 TTTGAGTCAA
42041 TGTATCGATACAAT-T-CTTCATGTATCGATACAT
1 TGTATCGATACAATGTGC--CATGTATCGATACAT
42074 TGTATCGATACAATGTGCCATGTATCGATACA
1 TGTATCGATACAATGTGCCATGTATCGATACA
42106 AACAGTGGTA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
33 28 0.93
34 1 0.03
35 1 0.03
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.35
Consensus pattern (33 bp):
TGTATCGATACAATGTGCCATGTATCGATACAT
Found at i:42297 original size:21 final size:22
Alignment explanation
Indices: 42248--42297 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 22
42238 ATTTTTACTT
*
42248 AAAAACATTTGATTTAAAGCTC
1 AAAAACATTTGATTCAAAGCTC
*
42270 GAAAACATTTG-TTCATAA-CTC
1 AAAAACATTTGATTCA-AAGCTC
42291 AAAAACA
1 AAAAACA
42298 CTTATTGAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
21 12 0.50
22 12 0.50
ACGTcount: A:0.48, C:0.16, G:0.08, T:0.28
Consensus pattern (22 bp):
AAAAACATTTGATTCAAAGCTC
Found at i:42726 original size:166 final size:168
Alignment explanation
Indices: 42515--42938 Score: 477
Period size: 167 Copynumber: 2.5 Consensus size: 168
42505 GAAAAGGGAG
* ** *
42515 ATTTTAAAGAAAAAATAAAAAAACTCATGAAAATGAATGAATTTTTCAAAACTGATTTAATGTGA
1 ATTTCAAAGAAAAAATTCAAAAACTCATGAAAATAAATGAATTTTTCAAAACTGATTTAATGTGA
*
42580 ATTAAATAATAATATTTGATGAATTTAAAAAATTAAAAACTAAGAAAAAT-CTCCCCG-AAAAAA
66 ATTAAATAATAATATTTGATGAATTTAAAAAATTAAAAACCAAG-AAAATCCT-CCCGAAAAAAA
** ** *
42643 TTTACGGAGTAGAAAATTTTGT-TTTTCAGAAATAAGA-AA
129 TTTACGGAAAAGAAAATCCTGTAATTTCA-AAATAAGAGAA
* * * *
42682 ATTTCAAAGAAAAAATTCAAAAACCCATGAAAAT-AATGAATTTTTGAAAAATGATTTAATATGA
1 ATTTCAAAGAAAAAATTCAAAAACTCATGAAAATAAATGAATTTTTCAAAACTGATTTAATGTGA
* * *
42746 ATTAAATAATAATATTTGATGAATTTTAAAAAATTTAAACCCATGAAAATCCTCCCGAAAAAAAT
66 ATTAAATAATAATATTTGATGAA-TTTAAAAAATTAAAAACCAAGAAAATCCTCCCGAAAAAAAT
* * *
42811 TTATGGAAAAGAAAATCCTGTAATTTGAAAATAAGAGGA
130 TTACGGAAAAGAAAATCCTGTAATTTCAAAATAAGAGAA
* * * * * * *
42850 ATTCCAAA-AGAAAA-TCAATAAGTCA-AAAAATAAAATGAATTTTTCAAAACTAATTTAATGGG
1 ATTTCAAAGAAAAAATTCAAAAACTCATGAAAAT-AAATGAATTTTTCAAAACTGATTTAATGTG
* * *
42912 ATTTAAATGATAATATTTGAAGAATTT
65 AATTAAATAATAATATTTGATGAATTT
42939 TGATGCTTGA
Statistics
Matches: 217, Mismatches: 33, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
165 5 0.02
166 70 0.32
167 130 0.60
168 12 0.06
ACGTcount: A:0.51, C:0.08, G:0.11, T:0.30
Consensus pattern (168 bp):
ATTTCAAAGAAAAAATTCAAAAACTCATGAAAATAAATGAATTTTTCAAAACTGATTTAATGTGA
ATTAAATAATAATATTTGATGAATTTAAAAAATTAAAAACCAAGAAAATCCTCCCGAAAAAAATT
TACGGAAAAGAAAATCCTGTAATTTCAAAATAAGAGAA
Found at i:45590 original size:13 final size:13
Alignment explanation
Indices: 45572--45597 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
45562 ATTTTTCTGA
45572 TGTATCGATACAT
1 TGTATCGATACAT
45585 TGTATCGATACAT
1 TGTATCGATACAT
45598 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:45828 original size:23 final size:23
Alignment explanation
Indices: 45785--45828 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
45775 TATATTTTAA
*
45785 CTTAAAAATCAATTATTTTAAGC
1 CTTAAAAATCAATTATCTTAAGC
*
45808 CTTAAAAA-CATTTATACTTAA
1 CTTAAAAATCAATTAT-CTTAA
45829 CTAGAAAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.45, C:0.14, G:0.02, T:0.39
Consensus pattern (23 bp):
CTTAAAAATCAATTATCTTAAGC
Found at i:46243 original size:20 final size:22
Alignment explanation
Indices: 46218--46258 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 22
46208 TTCTTTTCTT
46218 TCCCCCTTAA-AA-ATAATTTC
1 TCCCCCTTAATAAGATAATTTC
46238 TCCCCCTTAATAAGATAATTT
1 TCCCCCTTAATAAGATAATTT
46259 TAACAAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 10 0.53
21 2 0.11
22 7 0.37
ACGTcount: A:0.34, C:0.27, G:0.02, T:0.37
Consensus pattern (22 bp):
TCCCCCTTAATAAGATAATTTC
Found at i:47988 original size:21 final size:21
Alignment explanation
Indices: 47964--48010 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
47954 TTTGAAGCTG
47964 ATTTTG-A-TGAAAAACGAAGT
1 ATTTTGAAGTGAAAAAC-AAGT
*
47984 AATTTGAAGTGAAAAACAAGT
1 ATTTTGAAGTGAAAAACAAGT
48005 ATTTTG
1 ATTTTG
48011 CAAAAGATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 5 0.22
21 10 0.43
22 8 0.35
ACGTcount: A:0.45, C:0.04, G:0.19, T:0.32
Consensus pattern (21 bp):
ATTTTGAAGTGAAAAACAAGT
Found at i:48150 original size:13 final size:13
Alignment explanation
Indices: 48132--48170 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
48122 ATAATCCCCT
*
48132 TGTATCGATACAG
1 TGTATCGATACAA
48145 TGTATCGATACAA
1 TGTATCGATACAA
48158 TGTATCGATACAA
1 TGTATCGATACAA
48171 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:54372 original size:13 final size:13
Alignment explanation
Indices: 54354--54379 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
54344 ATTTTTCTGA
54354 TGTATCGATACAT
1 TGTATCGATACAT
54367 TGTATCGATACAT
1 TGTATCGATACAT
54380 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:55085 original size:96 final size:96
Alignment explanation
Indices: 54913--55237 Score: 361
Period size: 97 Copynumber: 3.4 Consensus size: 96
54903 TTTTTTTATT
* * * *
54913 GGGGATACTCCAA-CCC-TTTTTTTGAGGGGATACTCTAATCTCAGTTTTAAATTTGTCAAGGTT
1 GGGGATACTCCAACCCCATTCTTTTGAGGGGATACTCTAACCT-AGTTTTTAATTTGTCAAGATT
* * *
54976 TAAATCTTGTTTTTGCCTAAATTGTCATCATC
65 TAAATCTTATTTTTGCCTAAATTATCATCGTC
* * *
55008 GAGGATACTCCAACCCCATTCTTTTGAGGGGATACTCTAACCTTGTTTTTAACTTGTCAAGATTT
1 GGGGATACTCCAACCCCATTCTTTTGAGGGGATACTCTAACCTAGTTTTTAATTTGTCAAGATTT
55073 AAATCTTATTTTTGCCTAAATTATCATCGTC
66 AAATCTTATTTTTGCCTAAATTATCATCGTC
** *** * ** * * *
55104 GGGGATACTTTAACCTGGTTCTTTCGAGAAGATACTCCAACCCCA-TTTTTAAATTTGTCAAGCT
1 GGGGATACTCCAACCCCATTCTTTTGAGGGGATACTCTAA-CCTAGTTTTT-AATTTGTCAAGAT
55168 TTAAATCTTATTTTTGCCTAAATTATCATCGTC
64 TTAAATCTTATTTTTGCCTAAATTATCATCGTC
* * * *
55201 GGGGATACTCTAATCTCATT-TCTCTGAGGGGATACTC
1 GGGGATACTCCAACCCCATTCT-TTTGAGGGGATACTC
55238 CAGCCCCATT
Statistics
Matches: 193, Mismatches: 32, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
95 12 0.06
96 85 0.44
97 96 0.50
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.39
Consensus pattern (96 bp):
GGGGATACTCCAACCCCATTCTTTTGAGGGGATACTCTAACCTAGTTTTTAATTTGTCAAGATTT
AAATCTTATTTTTGCCTAAATTATCATCGTC
Found at i:64214 original size:12 final size:13
Alignment explanation
Indices: 64198--64241 Score: 52
Period size: 16 Copynumber: 3.1 Consensus size: 13
64188 AATAATAATA
64198 AAAAAAGAAAAAG
1 AAAAAAGAAAAAG
64211 AAAAAATGTAAGAAAG
1 AAAAAA-G-AA-AAAG
64227 AAAAAGAGAAAAAG
1 AAAAA-AGAAAAAG
64241 A
1 A
64242 GTTTGGATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
13 6 0.22
14 6 0.22
15 4 0.15
16 10 0.37
17 1 0.04
ACGTcount: A:0.77, C:0.00, G:0.18, T:0.05
Consensus pattern (13 bp):
AAAAAAGAAAAAG
Found at i:65587 original size:30 final size:30
Alignment explanation
Indices: 65529--65713 Score: 185
Period size: 30 Copynumber: 6.1 Consensus size: 30
65519 GTACCATTTT
* * *
65529 AAAGTTCACAACTCTGTGGCACCCCTTTTCA
1 AAAGTCCACAACTCCGTGGCA-CCTTTTTCA
*
65560 AAAGTCCACAACTCCGTGGCACCCTTTTCA
1 AAAGTCCACAACTCCGTGGCACCTTTTTCA
* * *
65590 AAAGTTCATAACTCCGTGGCACTCGTTTT--
1 AAAGTCCACAACTCCGTGGCAC-CTTTTTCA
* * * **
65619 AAAGTCCACAACTTCATGGCACATTTTTTTT
1 AAAGTCCACAACTCCGTGGCAC-CTTTTTCA
* **
65650 AAAGTCCATAACTCCGTGGCACCTTTTTTT
1 AAAGTCCACAACTCCGTGGCACCTTTTTCA
*
65680 AAAGTCCACAACTCCGTGTCACCTTTTTCA
1 AAAGTCCACAACTCCGTGGCACCTTTTTCA
65710 AAAG
1 AAAG
65714 GCTACATAAG
Statistics
Matches: 131, Mismatches: 20, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
29 22 0.17
30 66 0.50
31 43 0.33
ACGTcount: A:0.27, C:0.29, G:0.13, T:0.31
Consensus pattern (30 bp):
AAAGTCCACAACTCCGTGGCACCTTTTTCA
Found at i:65833 original size:32 final size:32
Alignment explanation
Indices: 65745--66048 Score: 263
Period size: 33 Copynumber: 9.3 Consensus size: 32
65735 CCTTTCAAAG
* * *
65745 TTCAAACCCCACATAAGTCGGTGGCAA-CCTAT
1 TTCAAAGCCCACACAAGTCAGTGGCAACCCT-T
*
65777 TTCAAAAGCCTACACAAGTCAGTGGCAACCCTT
1 TTC-AAAGCCCACACAAGTCAGTGGCAACCCTT
* *
65810 TTCAAAGCCCACATAAGTTAGTGGCAA-CCTAT
1 TTCAAAGCCCACACAAGTCAGTGGCAACCCT-T
* *
65842 TTCAAAAGCCCACACAAGACAGTGGTAACCCTT
1 TTC-AAAGCCCACACAAGTCAGTGGCAACCCTT
* * *
65875 TTCAAAGCCCATACAAGTCGGTGGCAATCCTT
1 TTCAAAGCCCACACAAGTCAGTGGCAACCCTT
* ** *
65907 TTCAAAAGCCTACACAAGTTGGTGGTAACCCCTT
1 TTC-AAAGCCCACACAAGTCAGTGGCAA-CCCTT
* *** * **
65941 TTAAAAATTCACATAAGTTGGTGGCAACCCTT
1 TTCAAAGCCCACACAAGTCAGTGGCAACCCTT
* *
65973 TTCAAAACCCACATAAGTCAGTGGCAACCCTTT
1 TTCAAAGCCCACACAAGTCAGTGGCAACCC-TT
* * *
66006 TTAAAAGCCCACAAAAGTC-GATGGTAACCCTT
1 TTCAAAGCCCACACAAGTCAG-TGGCAACCCTT
*
66038 TCCAAAGCCCA
1 TTCAAAGCCCA
66049 TACGAGTTGA
Statistics
Matches: 224, Mismatches: 39, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
31 3 0.01
32 97 0.43
33 112 0.50
34 12 0.05
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.23
Consensus pattern (32 bp):
TTCAAAGCCCACACAAGTCAGTGGCAACCCTT
Found at i:65849 original size:65 final size:65
Alignment explanation
Indices: 65745--66095 Score: 345
Period size: 65 Copynumber: 5.4 Consensus size: 65
65735 CCTTTCAAAG
* *
65745 TTCAAACCCCACATAAGTCGGTGGCAA-CCTATTTCAAAAGCCTACACAAGTCAGTGGCAACCCT
1 TTCAAAGCCCACATAAGTCGGTGGCAACCCT-TTTCAAAAGCCCACACAAGTCAGTGGCAACCCT
65809 T
65 T
** * *
65810 TTCAAAGCCCACATAAGTTAGTGGCAA-CCTATTTCAAAAGCCCACACAAGACAGTGGTAACCCT
1 TTCAAAGCCCACATAAGTCGGTGGCAACCCT-TTTCAAAAGCCCACACAAGTCAGTGGCAACCCT
65874 T
65 T
* * * * ** *
65875 TTCAAAGCCCATACAAGTCGGTGGCAATCCTTTTCAAAAGCCTACACAAGTTGGTGGTAACCCCT
1 TTCAAAGCCCACATAAGTCGGTGGCAACCCTTTTCAAAAGCCCACACAAGTCAGTGGCAA-CCCT
65940 T
65 T
* *** * *
65941 TTAAAAATTCACATAAGTTGGTGGCAACCCTTTTCAAAA-CCCACATAAGTCAGTGGCAACCCTT
1 TTCAAAGCCCACATAAGTCGGTGGCAACCCTTTTCAAAAGCCCACACAAGTCAGTGGCAACCC-T
66005 T
65 T
* * * * * * * *
66006 TTAAAAGCCCACAAAAGTCGATGGTAACCC-TTTCCAAAGCCCATACGAGT-TGATGGCAACCC-
1 TTCAAAGCCCACATAAGTCGGTGGCAACCCTTTTCAAAAGCCCACACAAGTCAG-TGGCAACCCT
66068 T
65 T
* *
66069 CTCAAAAGCCAACATAAGTCGGTGGCA
1 TTC-AAAGCCCACATAAGTCGGTGGCA
66096 TCTTCTTCTA
Statistics
Matches: 235, Mismatches: 45, Indels: 13
0.80 0.15 0.04
Matches are distributed among these distances:
63 2 0.01
64 30 0.13
65 164 0.70
66 39 0.17
ACGTcount: A:0.33, C:0.28, G:0.17, T:0.23
Consensus pattern (65 bp):
TTCAAAGCCCACATAAGTCGGTGGCAACCCTTTTCAAAAGCCCACACAAGTCAGTGGCAACCCTT
Found at i:65977 original size:98 final size:98
Alignment explanation
Indices: 65752--66048 Score: 312
Period size: 98 Copynumber: 3.0 Consensus size: 98
65742 AAGTTCAAAC
*
65752 CCCACATAAGTCGGTGGCAA-CCTATTTCAAAAGCCTACACAAGTCAGTGGCAACCCTTTTC-AA
1 CCCACATAAGTCGGTGGCAACCCT-TTTC-AAAGCCCACACAAGTCAGTGGCAACCCTTTTCAAA
* * * * *
65815 AGCCCACATAAGTTAGTGGCAACCTATTTCAAAAG
64 AGCCCACAAAAGTTGGTGGTAACCCATTTCAAAAA
* * * * * * *
65850 CCCACACAAGACAGTGGTAACCCTTTTCAAAGCCCATACAAGTCGGTGGCAATCCTTTTCAAAAG
1 CCCACATAAGTCGGTGGCAACCCTTTTCAAAGCCCACACAAGTCAGTGGCAACCCTTTTCAAAAG
* * * *
65915 CCTACACAAGTTGGTGGTAACCCCTTTTAAAAA
66 CCCACAAAAGTTGGTGGTAACCCATTTCAAAAA
** * * * *
65948 TTCACATAAGTTGGTGGCAACCCTTTTCAAAACCCACATAAGTCAGTGGCAACCCTTTTTAAAAG
1 CCCACATAAGTCGGTGGCAACCCTTTTCAAAGCCCACACAAGTCAGTGGCAACCCTTTTCAAAAG
* * * *
66013 CCCACAAAAGTCGATGGTAACCC-TTTCCAAAG
66 CCCACAAAAGTTGGTGGTAACCCATTTCAAAAA
66045 CCCA
1 CCCA
66049 TACGAGTTGA
Statistics
Matches: 159, Mismatches: 38, Indels: 5
0.79 0.19 0.02
Matches are distributed among these distances:
97 36 0.23
98 120 0.75
99 3 0.02
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.23
Consensus pattern (98 bp):
CCCACATAAGTCGGTGGCAACCCTTTTCAAAGCCCACACAAGTCAGTGGCAACCCTTTTCAAAAG
CCCACAAAAGTTGGTGGTAACCCATTTCAAAAA
Found at i:66095 original size:32 final size:33
Alignment explanation
Indices: 65752--66095 Score: 308
Period size: 32 Copynumber: 10.6 Consensus size: 33
65742 AAGTTCAAAC
65752 CCCACATAAGTCGGTGGCAA-CCTATTTCAAAAG
1 CCCACATAAGTCGGTGGCAACCCT-TTTCAAAAG
* * *
65785 CCTACACAAGTCAGTGGCAACCCTTTTC-AAAG
1 CCCACATAAGTCGGTGGCAACCCTTTTCAAAAG
**
65817 CCCACATAAGTTAGTGGCAA-CCTATTTCAAAAG
1 CCCACATAAGTCGGTGGCAACCCT-TTTCAAAAG
* * * *
65850 CCCACACAAGACAGTGGTAACCCTTTTC-AAAG
1 CCCACATAAGTCGGTGGCAACCCTTTTCAAAAG
* * *
65882 CCCATACAAGTCGGTGGCAATCCTTTTCAAAAG
1 CCCACATAAGTCGGTGGCAACCCTTTTCAAAAG
* * * * *
65915 CCTACACAAGTTGGTGGTAACCCCTTTT-AAAAA
1 CCCACATAAGTCGGTGGCAA-CCCTTTTCAAAAG
** *
65948 TTCACATAAGTTGGTGGCAACCCTTTTCAAAA-
1 CCCACATAAGTCGGTGGCAACCCTTTTCAAAAG
* *
65980 CCCACATAAGTCAGTGGCAACCCTTTTTAAAAG
1 CCCACATAAGTCGGTGGCAACCCTTTTCAAAAG
* * * *
66013 CCCACAAAAGTCGATGGTAACCC-TTTCCAAAG
1 CCCACATAAGTCGGTGGCAACCCTTTTCAAAAG
* ** * * *
66045 CCCATACGAGTTGATGGCAACCC-TCTCAAAAG
1 CCCACATAAGTCGGTGGCAACCCTTTTCAAAAG
*
66077 CCAACATAAGTCGGTGGCA
1 CCCACATAAGTCGGTGGCA
66096 TCTTCTTCTA
Statistics
Matches: 253, Mismatches: 50, Indels: 17
0.79 0.16 0.05
Matches are distributed among these distances:
31 3 0.01
32 131 0.52
33 107 0.42
34 12 0.05
ACGTcount: A:0.33, C:0.28, G:0.17, T:0.23
Consensus pattern (33 bp):
CCCACATAAGTCGGTGGCAACCCTTTTCAAAAG
Found at i:66173 original size:58 final size:58
Alignment explanation
Indices: 66097--66437 Score: 438
Period size: 58 Copynumber: 5.9 Consensus size: 58
66087 TCGGTGGCAT
*
66097 CTTC-TTCT-AAGCCCAATGTCGTTAGCCTTGAATCAACACATTGGCACTTGTCAAAC
1 CTTCTTTCTCAAGCCCAATGTCGTTGGCCTTGAATCAACACATTGGCACTTGTCAAAC
* *
66153 CTTCTTTCTCAAGCCCAATGTCATTGGCCTTGAATCAATACATTGGCACTTGTCAAAC
1 CTTCTTTCTCAAGCCCAATGTCGTTGGCCTTGAATCAACACATTGGCACTTGTCAAAC
* * *
66211 CTTCTTTCTCAAGCCCAATGTCGTTGGCCTTGAATAAATATATTGGCACTTGTCAAAC
1 CTTCTTTCTCAAGCCCAATGTCGTTGGCCTTGAATCAACACATTGGCACTTGTCAAAC
* **
66269 TTTCTTTCTCAAGCCCAATGTCGTTGGCCTTGAATCAACACATTAACACTTGTCAAAC
1 CTTCTTTCTCAAGCCCAATGTCGTTGGCCTTGAATCAACACATTGGCACTTGTCAAAC
* ** * * *
66327 CTT-TTTCCTTAAGCCCAATGTTATTGGCCTTGAATTAGCAAATTGGCACTTGTCAAAC
1 CTTCTTT-CTCAAGCCCAATGTCGTTGGCCTTGAATCAACACATTGGCACTTGTCAAAC
* * * * *
66385 CTTTTCATTT-TTAAGTCCAATGTTGTTGGCCTTGAATTAGCACATTGGCACTT
1 C--TTC-TTTCTCAAGCCCAATGTCGTTGGCCTTGAATCAACACATTGGCACTT
66438 TTCTCATCTT
Statistics
Matches: 254, Mismatches: 24, Indels: 10
0.88 0.08 0.03
Matches are distributed among these distances:
56 4 0.02
57 7 0.03
58 198 0.78
60 42 0.17
62 3 0.01
ACGTcount: A:0.26, C:0.25, G:0.15, T:0.35
Consensus pattern (58 bp):
CTTCTTTCTCAAGCCCAATGTCGTTGGCCTTGAATCAACACATTGGCACTTGTCAAAC
Found at i:66469 original size:52 final size:52
Alignment explanation
Indices: 66413--66605 Score: 190
Period size: 52 Copynumber: 3.7 Consensus size: 52
66403 AATGTTGTTG
* * * * *
66413 GCCTTGAATTAGCACATTGGCACTTTTCTCATCTTAAAGTCTAATATTGCTA
1 GCCTTGAATCAGCACATTGGCACCTTTATCATCTTTAAGTCTAATATCGCTA
* * * * *
66465 GCCTTG-ATCAGCATATTGGCACCTTTATTAACTTTAAGTTTGATATCGCTA
1 GCCTTGAATCAGCACATTGGCACCTTTATCATCTTTAAGTCTAATATCGCTA
* ** * * * ** *
66516 GCCTTGAATAAGCATGTTGGTACCTTTGTCATCTTTAAGTCCAATATCATTG
1 GCCTTGAATCAGCACATTGGCACCTTTATCATCTTTAAGTCTAATATCGCTA
* *
66568 GCCTTGAATCAGCACATTGACACTTTTATCATCTTTAA
1 GCCTTGAATCAGCACATTGGCACCTTTATCATCTTTAA
66606 ATCCAGTGTC
Statistics
Matches: 111, Mismatches: 29, Indels: 2
0.78 0.20 0.01
Matches are distributed among these distances:
51 41 0.37
52 70 0.63
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (52 bp):
GCCTTGAATCAGCACATTGGCACCTTTATCATCTTTAAGTCTAATATCGCTA
Found at i:67582 original size:51 final size:52
Alignment explanation
Indices: 67475--67590 Score: 153
Period size: 51 Copynumber: 2.2 Consensus size: 52
67465 GGAAAGAAAA
* * * *
67475 TGTATCGATACATTTTGGGTTTTTGACCCAAATGTATCAATACATTTTTCAT
1 TGTATCGATACATTTCGGGTTTTTGACCCAAATGTATCAATACACTCTTCAG
* **
67527 TGTATCGATACATTTCGGG-TTTTGACCTAAATGTATTGATACACTCTTCAG
1 TGTATCGATACATTTCGGGTTTTTGACCCAAATGTATCAATACACTCTTCAG
*
67578 TGTATCAATACAT
1 TGTATCGATACAT
67591 GTAGGTAATT
Statistics
Matches: 56, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
51 38 0.68
52 18 0.32
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.41
Consensus pattern (52 bp):
TGTATCGATACATTTCGGGTTTTTGACCCAAATGTATCAATACACTCTTCAG
Found at i:70826 original size:20 final size:20
Alignment explanation
Indices: 70784--70833 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
70774 TGTTTTTCAA
*
70784 GTATCGATACAATGCAACAT
1 GTATCGATACAATGAAACAT
* **
70804 GTATCGATACAATTAAATGT
1 GTATCGATACAATGAAACAT
70824 GTATCGATAC
1 GTATCGATAC
70834 TTTTCAGGGT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (20 bp):
GTATCGATACAATGAAACAT
Found at i:71243 original size:20 final size:19
Alignment explanation
Indices: 71218--71308 Score: 87
Period size: 20 Copynumber: 4.6 Consensus size: 19
71208 TGCCACTTTC
71218 ATGTATCGATACAATTGAGT
1 ATGTATCGATACAA-TGAGT
**
71238 ATGTATCGATACAATGAAC
1 ATGTATCGATACAATGAGT
*
71257 ATGTATCGATACAAAGCA-T
1 ATGTATCGATACAATG-AGT
*
71276 GATGTATCGATACATCTG-GAT
1 -ATGTATCGATACA-ATGAG-T
71297 ATGTATCGATAC
1 ATGTATCGATAC
71309 TTTCAATGAC
Statistics
Matches: 60, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
19 18 0.30
20 40 0.67
21 2 0.03
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (19 bp):
ATGTATCGATACAATGAGT
Found at i:71281 original size:39 final size:40
Alignment explanation
Indices: 71217--71308 Score: 109
Period size: 39 Copynumber: 2.3 Consensus size: 40
71207 CTGCCACTTT
*
71217 CATGTATCGATACAATTGAGTATGTATCGATACA-ATGAA
1 CATGTATCGATACAATAGAGTATGTATCGATACATATGAA
* *
71256 CATGTATCGATACAA-AGCA-TGATGTATCGATACATCTGGA
1 CATGTATCGATACAATAG-AGT-ATGTATCGATACATATGAA
*
71296 TATGTATCGATAC
1 CATGTATCGATAC
71309 TTTCAATGAC
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
38 2 0.04
39 29 0.63
40 15 0.33
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.30
Consensus pattern (40 bp):
CATGTATCGATACAATAGAGTATGTATCGATACATATGAA
Found at i:78388 original size:15 final size:15
Alignment explanation
Indices: 78350--78396 Score: 76
Period size: 15 Copynumber: 3.1 Consensus size: 15
78340 TGAGTCAACT
*
78350 TCATCATTGTCATCA
1 TCATCATTATCATCA
78365 TCATCATTATCATCA
1 TCATCATTATCATCA
*
78380 TCATCATTATCTTCA
1 TCATCATTATCATCA
78395 TC
1 TC
78397 GTCTTTGATG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.28, C:0.28, G:0.02, T:0.43
Consensus pattern (15 bp):
TCATCATTATCATCA
Found at i:80086 original size:19 final size:19
Alignment explanation
Indices: 80041--80096 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
80031 ACTCCACTTG
*
80041 CATGTATCGATACAATTGAG
1 CATGTATCGATACAA-TGAA
*
80061 TATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
*
80080 CATGTATCGATATAATG
1 CATGTATCGATACAATG
80097 TATCGATACA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 18 0.56
20 14 0.44
ACGTcount: A:0.38, C:0.12, G:0.18, T:0.32
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:81248 original size:10 final size:10
Alignment explanation
Indices: 81233--81263 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
81223 TTTTGAAAAA
81233 TTCATTTATT
1 TTCATTTATT
81243 TTCATTTATT
1 TTCATTTATT
81253 TTCATTTATT
1 TTCATTTATT
81263 T
1 T
81264 CCTTAAAATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.19, C:0.10, G:0.00, T:0.71
Consensus pattern (10 bp):
TTCATTTATT
Found at i:81344 original size:165 final size:162
Alignment explanation
Indices: 80977--81427 Score: 486
Period size: 165 Copynumber: 2.8 Consensus size: 162
80967 TTTTTTCATT
80977 CCATAAATGTTTTCG-GGGGTTTTTTTAGTTCAAAATTTTTAATATTCATCAAATATCATCATTT
1 CCATAAATGTTTTCGAGGGGTTTTTTTAGTTCAAAATTTTTAA-ATTCATCAAATATCATCATTT
* * *
81041 AATTCATAGTAAATTAGTTTT-CAAAATTCATTTATTTTCATGAGTTTTTCATATTTTTCGTTAA
65 AATTCATATTAAATTAGTTTTGAAAAATTCATTTATTTTCATGAG-TTTTCATATTTTTCCTTAA
* * * * * * *
81105 AATTCTTTTGTTTTGAAAAATCGAGTTTTCTATT
129 AATCCTTATGTTTTGAAAAACCAAATTTCCTATC
* * * *
81139 TCATGAAGGTTTTC-ATGGGGGTTTTTCTAAGTTCAAAATTTTTGAAATTCATCAAATATCATCA
1 CCATAAATGTTTTCGA--GGGGTTTTT-TTAGTTCAAAATTTTT-AAATTCATCAAATATCATCA
*
81203 TTTAATTCATATTAAATTAGTTTTGAAAAATTCATTTATTTTCATTTA-TTTTCAT-TTATTTCC
62 TTTAATTCATATTAAATTAGTTTTGAAAAATTCATTTATTTTCA-TGAGTTTTCATATT-TTTCC
81266 TTAAAATGCCTTAT-TTTTGAAAAACCAAATTTCCTATC
125 TTAAAAT-CCTTATGTTTTGAAAAACCAAATTTCCTATC
* * ** **
81304 CCATAAATGTTTTCGAGGGGATTTTCTTTAGTTTAAAATTTTTATAATACATCTGATATTTTCAT
1 CCATAAATGTTTTCGAGGGG-TTTT-TTTAGTTCAAAATTTTTA-AATTCATCAAATATCATCAT
* * ** * *
81369 TGAACTCCCATTAAATTAGTTTTGAGAAATTCAATTTATTTT-ATGAGTTTTGA-ATTTTT
63 TTAATTCATATTAAATTAGTTTTGAAAAATTC-ATTTATTTTCATGAGTTTTCATATTTTT
81428 TTAGTATATA
Statistics
Matches: 241, Mismatches: 32, Indels: 30
0.80 0.11 0.10
Matches are distributed among these distances:
162 11 0.05
164 21 0.09
165 172 0.71
166 35 0.15
167 2 0.01
ACGTcount: A:0.31, C:0.11, G:0.10, T:0.48
Consensus pattern (162 bp):
CCATAAATGTTTTCGAGGGGTTTTTTTAGTTCAAAATTTTTAAATTCATCAAATATCATCATTTA
ATTCATATTAAATTAGTTTTGAAAAATTCATTTATTTTCATGAGTTTTCATATTTTTCCTTAAAA
TCCTTATGTTTTGAAAAACCAAATTTCCTATC
Found at i:82922 original size:6 final size:7
Alignment explanation
Indices: 82903--82928 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
82893 AATGAATTTT
82903 TTAAAAA
1 TTAAAAA
82910 TTAAAAA
1 TTAAAAA
82917 TTAAAAA
1 TTAAAAA
82924 TTAAA
1 TTAAA
82929 TAAAAATTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (7 bp):
TTAAAAA
Found at i:87126 original size:12 final size:11
Alignment explanation
Indices: 87104--87179 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
87094 AGAGAAAGAA
*
87104 GAGAGAGGAGG
1 GAGATAGGAGG
87115 GATGATAGGAGG
1 GA-GATAGGAGG
*
87127 AGAGACAGGA--
1 -GAGATAGGAGG
*
87137 GAGATAGTA--
1 GAGATAGGAGG
87146 GAGATAGGAGG
1 GAGATAGGAGG
87157 GATGATAGGAGG
1 GA-GATAGGAGG
*
87169 AGAGACAGGAG
1 -GAGATAGGAG
87180 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:87136 original size:24 final size:24
Alignment explanation
Indices: 87103--87188 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
87093 AAGAGAAAGA
*
87103 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
87127 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
87145 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
87169 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
87189 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:87155 original size:42 final size:42
Alignment explanation
Indices: 87094--87212 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
87084 TAGCCCTCAA
* *
87094 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
87136 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
87178 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
87213 GAGAGAAGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.43, C:0.03, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:95194 original size:33 final size:32
Alignment explanation
Indices: 95136--95200 Score: 78
Period size: 33 Copynumber: 2.0 Consensus size: 32
95126 TTGAAAGTAA
*
95136 TGTATCGATACAATTCAACATGTATCAATACAT
1 TGTATCGATACAATTC-ACACGTATCAATACAT
*
95169 TGTATCGATACAATATGC-CACGTATCGATACA
1 TGTATCGATACAAT-T-CACACGTATCAATACA
95201 AACAGTGGTA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
33 26 0.93
34 1 0.04
35 1 0.04
ACGTcount: A:0.37, C:0.20, G:0.12, T:0.31
Consensus pattern (32 bp):
TGTATCGATACAATTCACACGTATCAATACAT
Found at i:95269 original size:13 final size:13
Alignment explanation
Indices: 95251--95276 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
95241 ACAATTGTCC
95251 ATGTATCGATACA
1 ATGTATCGATACA
95264 ATGTATCGATACA
1 ATGTATCGATACA
95277 TAGCATAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:95875 original size:21 final size:23
Alignment explanation
Indices: 95849--95892 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
95839 GGTTCTTGTT
*
95849 AAAAAATTT-T-CCCTTTGATAA
1 AAAAAATTTCTCCCCCTTGATAA
95870 AAAAAATTTCTCCCCCTTGATAA
1 AAAAAATTTCTCCCCCTTGATAA
95893 TCGGTTAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 9 0.45
22 1 0.05
23 10 0.50
ACGTcount: A:0.41, C:0.20, G:0.05, T:0.34
Consensus pattern (23 bp):
AAAAAATTTCTCCCCCTTGATAA
Found at i:97624 original size:22 final size:21
Alignment explanation
Indices: 97589--97638 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
97579 TTTGTTGATG
*
97589 ATTTTG-A-TGAAAAATGAAGT
1 ATTTTGAAGTGAAAAAT-AAGA
97609 ATTTTGAAGTGAAAAATAAGA
1 ATTTTGAAGTGAAAAATAAGA
*
97630 AATTTGAAG
1 ATTTTGAAG
97639 AAGATTTGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 6 0.23
21 12 0.46
22 8 0.31
ACGTcount: A:0.48, C:0.00, G:0.20, T:0.32
Consensus pattern (21 bp):
ATTTTGAAGTGAAAAATAAGA
Found at i:97635 original size:21 final size:22
Alignment explanation
Indices: 97596--97638 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
97586 ATGATTTTGA
* *
97596 TGAAAAATGAAGTATTTTGAAG
1 TGAAAAATGAAGAAATTTGAAG
97618 TGAAAAAT-AAGAAATTTGAAG
1 TGAAAAATGAAGAAATTTGAAG
97639 AAGATTTGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.51, C:0.00, G:0.21, T:0.28
Consensus pattern (22 bp):
TGAAAAATGAAGAAATTTGAAG
Found at i:102310 original size:3 final size:3
Alignment explanation
Indices: 102304--102346 Score: 77
Period size: 3 Copynumber: 14.3 Consensus size: 3
102294 TCCGAGTCAC
*
102304 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CTT CAT C
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT C
102347 GTCTTTGGTG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.30, C:0.35, G:0.00, T:0.35
Consensus pattern (3 bp):
CAT
Found at i:102351 original size:9 final size:9
Alignment explanation
Indices: 102306--102351 Score: 56
Period size: 9 Copynumber: 5.1 Consensus size: 9
102296 CGAGTCACCA
*
102306 TCATCATCA
1 TCATCATCT
*
102315 TCATCATCA
1 TCATCATCT
*
102324 TCATCATCA
1 TCATCATCT
102333 TCATCATCT
1 TCATCATCT
*
102342 TCATCGTCT
1 TCATCATCT
102351 T
1 T
102352 TGGTGGTTGA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 35 1.00
ACGTcount: A:0.26, C:0.33, G:0.02, T:0.39
Consensus pattern (9 bp):
TCATCATCT
Found at i:103979 original size:13 final size:13
Alignment explanation
Indices: 103961--103985 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
103951 TAATGTGCCA
103961 TGTATCGATACAT
1 TGTATCGATACAT
103974 TGTATCGATACA
1 TGTATCGATACA
103986 ATGTGCCATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:103999 original size:20 final size:20
Alignment explanation
Indices: 103939--103999 Score: 64
Period size: 20 Copynumber: 3.4 Consensus size: 20
103929 TACAATTCAA
*
103939 CATGTATCGATATAATGTGC
1 CATGTATCGATACAATGTGC
103959 CATGTATCGATAC-A--T--
1 CATGTATCGATACAATGTGC
103974 --TGTATCGATACAATGTGC
1 CATGTATCGATACAATGTGC
103992 CATGTATC
1 CATGTATC
104000 AAAACAAATA
Statistics
Matches: 33, Mismatches: 1, Indels: 14
0.69 0.02 0.29
Matches are distributed among these distances:
13 11 0.33
14 1 0.03
16 1 0.03
17 1 0.03
19 1 0.03
20 18 0.55
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (20 bp):
CATGTATCGATACAATGTGC
Found at i:104060 original size:20 final size:20
Alignment explanation
Indices: 104035--104089 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 20
104025 CTGCCAGTTT
**
104035 CATGTATCGATACAATTGTC
1 CATGTATCGATACAATTGAA
*
104055 CATGTATCGATATAA-TGAA
1 CATGTATCGATACAATTGAA
*
104074 CACGTATCGATACAAT
1 CATGTATCGATACAAT
104090 GTATCGATAC
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
19 15 0.52
20 14 0.48
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:104921 original size:11 final size:10
Alignment explanation
Indices: 104905--104962 Score: 50
Period size: 11 Copynumber: 5.7 Consensus size: 10
104895 AATAATAATT
104905 AAAAAAATCA
1 AAAAAAATCA
104915 CAAAAAAAT-A
1 -AAAAAAATCA
104925 AAAAAAATCA
1 AAAAAAATCA
*
104935 TAAAATAAT-A
1 -AAAAAAATCA
104945 AAATAATAAT-A
1 AAA-AA-AATCA
104956 AAAAAAA
1 AAAAAAA
104963 GAAAGAAAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
9 13 0.32
10 6 0.15
11 22 0.54
ACGTcount: A:0.79, C:0.05, G:0.00, T:0.16
Consensus pattern (10 bp):
AAAAAAATCA
Found at i:104930 original size:20 final size:20
Alignment explanation
Indices: 104905--104947 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
104895 AATAATAATT
104905 AAAAAAATCACAAAAAAATA
1 AAAAAAATCACAAAAAAATA
* *
104925 AAAAAAATCATAAAATAATA
1 AAAAAAATCACAAAAAAATA
104945 AAA
1 AAA
104948 TAATAATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.79, C:0.07, G:0.00, T:0.14
Consensus pattern (20 bp):
AAAAAAATCACAAAAAAATA
Found at i:106291 original size:31 final size:31
Alignment explanation
Indices: 106244--106403 Score: 100
Period size: 31 Copynumber: 5.3 Consensus size: 31
106234 GTGGAGTACC
*
106244 TTTTC-AAAGTCAACAACTCCATGGCATCATT
1 TTTTCAAAAGTCCACAACTCCATGGCA-CATT
* * * *
106275 TTTT-AAAAGTTCACAACTTCGTGGCACCTT
1 TTTTCAAAAGTCCACAACTCCATGGCACATT
** **
106305 TTTTCAAAAGTCCACAACTCTGTGGCAC-CC
1 TTTTCAAAAGTCCACAACTCCATGGCACATT
** *
106335 TTTT--AAAGTCCACAACTCTGTGGCACCCTT
1 TTTTCAAAAGTCCACAACTCCATGGCA-CATT
* * * * *
106365 TTTT-TAAAGTCTACAACTCTATGACAC-CT
1 TTTTCAAAAGTCCACAACTCCATGGCACATT
106394 TTTTCAAAAG
1 TTTTCAAAAG
106404 CTTACAAAAG
Statistics
Matches: 106, Mismatches: 17, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
28 21 0.20
29 6 0.06
30 20 0.19
31 59 0.56
ACGTcount: A:0.29, C:0.26, G:0.11, T:0.34
Consensus pattern (31 bp):
TTTTCAAAAGTCCACAACTCCATGGCACATT
Found at i:106351 original size:28 final size:29
Alignment explanation
Indices: 106275--106403 Score: 127
Period size: 31 Copynumber: 4.3 Consensus size: 29
106265 TGGCATCATT
* *
106275 TTTTAAAAGTTCACAACT-TCGTGGCACCTT
1 TTTTAAAAGTCCACAACTCT-GTGGCACC-C
106305 TTTTCAAAAGTCCACAACTCTGTGGCACCC
1 TTTT-AAAAGTCCACAACTCTGTGGCACCC
106335 TTTT-AAAGTCCACAACTCTGTGGCACCC
1 TTTTAAAAGTCCACAACTCTGTGGCACCC
* * * * *
106363 TTTTTTTAAAGTCTACAACTCTATGACACCT
1 --TTTTAAAAGTCCACAACTCTGTGGCACCC
106394 TTTTCAAAAG
1 TTTT-AAAAG
106404 CTTACAAAAG
Statistics
Matches: 86, Mismatches: 7, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
28 24 0.28
29 4 0.05
30 16 0.19
31 41 0.48
32 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.12, T:0.34
Consensus pattern (29 bp):
TTTTAAAAGTCCACAACTCTGTGGCACCC
Found at i:106454 original size:33 final size:32
Alignment explanation
Indices: 106394--106769 Score: 260
Period size: 33 Copynumber: 11.7 Consensus size: 32
106384 TATGACACCT
** * **
106394 TTTTCAAAAGCTTACAAAAGTCAGTGGCAACC
1 TTTTCAAAAGCCCACACAAGTTGGTGGCAACC
* *
106426 TTTCTCAAAAGTCCACATAAGTTGGTGGCAACC
1 TTT-TCAAAAGCCCACACAAGTTGGTGGCAACC
* * ** *
106459 CTTTCAACA-CCCACACAAGTCAGTGGAAATCC
1 TTTTCAAAAGCCCACACAAGTTGGTGGCAA-CC
* * * * * * **
106491 CTTTCAAAGGACTACATAAGTCGGTCACAACC
1 TTTTCAAAAGCCCACACAAGTTGGTGGCAACC
** *
106523 TTTTTTAAAGCCCACACAAGTTGGTGGTAACTC
1 TTTTCAAAAGCCCACACAAGTTGGTGGCAAC-C
*
106556 TTTTCAAAAGCCCATACAAGTTGGTGGCAACC
1 TTTTCAAAAGCCCACACAAGTTGGTGGCAACC
* * * *
106588 CTTTC-AAAGCCCACATAAATTGGT-GTAACCC
1 TTTTCAAAAGCCCACACAAGTTGGTGGCAA-CC
* * * *
106619 CTTTCAAAAGCCCATAGAAGTCGGTGGCAACCC
1 TTTTCAAAAGCCCACACAAGTTGGTGGCAA-CC
* * *
106652 TTTT-TAAAGGCCATACAAGTTGGTGGCAACC
1 TTTTCAAAAGCCCACACAAGTTGGTGGCAACC
* * *
106683 TTTTTCGAAAGCCCACACAAGTCGATGGCAATCC
1 -TTTTCAAAAGCCCACACAAGTTGGTGGCAA-CC
* *
106717 TTTTC-AAAGCCCACATAAG-TAGTGGCAACC
1 TTTTCAAAAGCCCACACAAGTTGGTGGCAACC
* * *
106747 CTCTCAAAAGCCTACACAAGTTG
1 TTTTCAAAAGCCCACACAAGTTG
106770 ATCGCATCTC
Statistics
Matches: 266, Mismatches: 66, Indels: 24
0.75 0.19 0.07
Matches are distributed among these distances:
30 8 0.03
31 58 0.22
32 98 0.37
33 100 0.38
34 2 0.01
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (32 bp):
TTTTCAAAAGCCCACACAAGTTGGTGGCAACC
Found at i:106498 original size:64 final size:63
Alignment explanation
Indices: 106411--106767 Score: 252
Period size: 65 Copynumber: 5.6 Consensus size: 63
106401 AAGCTTACAA
* * * *
106411 AAGTCAGTGGCAACCTTTCTCAAAAGTCCACATAAGTTGGTGGCAACCCTTTCAACA-CCCACAC
1 AAGTCAGTGGTAACCCTT-TCAAAAGCCCACATAAGTCGGTGGCAACCCTTTCAA-AGCCCACAC
* * * * ** * *
106475 AAGTCAGTGGAAATCCCTTTCAAAGGACTACATAAGTCGGTCACAACCTTTTTTAAAGCCCACAC
1 AAGTCAGTGGTAA-CCCTTTCAAAAGCCCACATAAGTCGGTGGCAACC-CTTTCAAAGCCCACAC
** * * * * *
106540 AAGTTGGTGGTAACTCTTTTCAAAAGCCCATACAAGTTGGTGGCAACCCTTTCAAAGCCCACAT
1 AAGTCAGTGGTAAC-CCTTTCAAAAGCCCACATAAGTCGGTGGCAACCCTTTCAAAGCCCACAC
* ** * * * * *
106604 AAATTGGT-GTAACCCCTTTCAAAAGCCCATAGAAGTCGGTGGCAACCCTTTTTAAAGGCCATAC
1 AAGTCAGTGGTAA-CCCTTTCAAAAGCCCACATAAGTCGGTGGCAACCC-TTTCAAAGCCCACAC
** * * * * * * *
106668 AAGTTGGTGGCAACCTTTTTCGAAAGCCCACACAAGTCGATGGCAATCCTTTTCAAAGCCCACAT
1 AAGTCAGTGGTAACC-CTTTCAAAAGCCCACATAAGTCGGTGGCAA-CCCTTTCAAAGCCCACAC
* * * *
106733 AAGT-AGTGGCAACCCTCTCAAAAGCCTACACAAGT
1 AAGTCAGTGGTAACCCTTTCAAAAGCCCACATAAGT
106768 TGATCGCATC
Statistics
Matches: 234, Mismatches: 50, Indels: 19
0.77 0.17 0.06
Matches are distributed among these distances:
63 52 0.22
64 87 0.37
65 93 0.40
66 2 0.01
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (63 bp):
AAGTCAGTGGTAACCCTTTCAAAAGCCCACATAAGTCGGTGGCAACCCTTTCAAAGCCCACAC
Done.