Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2685
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 205725
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
File 1 of 2
Found at i:3649 original size:13 final size:13
Alignment explanation
Indices: 3631--3691 Score: 53
Period size: 13 Copynumber: 5.2 Consensus size: 13
3621 ATACAAAGAT
3631 CAATGTATCAATA
1 CAATGTATCAATA
*
3644 CAATGTATCGATA
1 CAATGTATCAATA
*
3657 C-A--T-TGAAT-
1 CAATGTATCAATA
3665 -AATGTATCAATA
1 CAATGTATCAATA
*
3677 CAATGTATCGATA
1 CAATGTATCAATA
3690 CA
1 CA
3692 TTGAATAATG
Statistics
Matches: 37, Mismatches: 5, Indels: 12
0.69 0.09 0.22
Matches are distributed among these distances:
8 1 0.03
9 3 0.08
10 2 0.05
11 4 0.11
12 1 0.03
13 26 0.70
ACGTcount: A:0.43, C:0.15, G:0.11, T:0.31
Consensus pattern (13 bp):
CAATGTATCAATA
Found at i:3655 original size:33 final size:33
Alignment explanation
Indices: 3613--3711 Score: 164
Period size: 33 Copynumber: 3.0 Consensus size: 33
3603 AAATTCCCAG
**
3613 ATGTATCGATACAAAG-ATCAATGTATCAATACA
1 ATGTATCGATACATTGAAT-AATGTATCAATACA
3646 ATGTATCGATACATTGAATAATGTATCAATACA
1 ATGTATCGATACATTGAATAATGTATCAATACA
3679 ATGTATCGATACATTGAATAATGTATCAATACA
1 ATGTATCGATACATTGAATAATGTATCAATACA
3712 TTTCCTTGGC
Statistics
Matches: 63, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
33 61 0.97
34 2 0.03
ACGTcount: A:0.43, C:0.13, G:0.12, T:0.31
Consensus pattern (33 bp):
ATGTATCGATACATTGAATAATGTATCAATACA
Found at i:3670 original size:20 final size:20
Alignment explanation
Indices: 3645--3713 Score: 71
Period size: 20 Copynumber: 3.8 Consensus size: 20
3635 GTATCAATAC
3645 AATGTATCGATACATTGAAT
1 AATGTATCGATACATTGAAT
*
3665 AATGTATC---A-A-T--AC
1 AATGTATCGATACATTGAAT
3678 AATGTATCGATACATTGAAT
1 AATGTATCGATACATTGAAT
*
3698 AATGTATCAATACATT
1 AATGTATCGATACATT
3714 TCCTTGGCAG
Statistics
Matches: 39, Mismatches: 3, Indels: 14
0.70 0.05 0.25
Matches are distributed among these distances:
13 9 0.23
15 1 0.03
16 2 0.05
17 2 0.05
18 1 0.03
20 24 0.62
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTGAAT
Found at i:6820 original size:20 final size:20
Alignment explanation
Indices: 6794--6848 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 20
6784 AAAAAGACAG
*
6794 AATGTATCGATACATTCATA
1 AATGTATCGATACATTCAAA
* * * *
6814 TATGTATTGATGCATTGAAA
1 AATGTATCGATACATTCAAA
*
6834 AATGTATCGTTACAT
1 AATGTATCGATACAT
6849 CGAGGTAAAA
Statistics
Matches: 26, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.36, C:0.11, G:0.15, T:0.38
Consensus pattern (20 bp):
AATGTATCGATACATTCAAA
Found at i:6860 original size:71 final size:71
Alignment explanation
Indices: 6744--6879 Score: 182
Period size: 71 Copynumber: 1.9 Consensus size: 71
6734 TTTTAACTAG
* * * *
6744 ATGTATTGATACATTGAAAAATGTGTTAATACATCTAGAAAAAAAGACAGAATGTATCGATACAT
1 ATGTATTGATACATTGAAAAATGTATCAATACATCGAGAAAAAAAGACAGAATGTATCGACACAT
6809 TCATAT
66 TCATAT
* ** ** *
6815 ATGTATTGATGCATTGAAAAATGTATCGTTACATCGAGGTAAAAAGATAGAATGTATCGACACAT
1 ATGTATTGATACATTGAAAAATGTATCAATACATCGAGAAAAAAAGACAGAATGTATCGACACAT
6880 ACGGGTAAAA
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
71 55 1.00
ACGTcount: A:0.43, C:0.10, G:0.17, T:0.30
Consensus pattern (71 bp):
ATGTATTGATACATTGAAAAATGTATCAATACATCGAGAAAAAAAGACAGAATGTATCGACACAT
TCATAT
Found at i:7325 original size:13 final size:13
Alignment explanation
Indices: 7307--7333 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
7297 ATATTATGCT
7307 TTGTATCGATACA
1 TTGTATCGATACA
7320 TTGTATCGATACA
1 TTGTATCGATACA
7333 T
1 T
7334 GTTCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:7363 original size:20 final size:19
Alignment explanation
Indices: 7317--7373 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
7307 TTGTATCGAT
*
7317 ACATTGTATCGATACATGT
1 ACATTGTATCGATACATGG
* *
7336 TCATTGTATAGATACATGG
1 ACATTGTATCGATACATGG
7355 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
7374 AGATTGGCAA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
19 17 0.53
20 15 0.47
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (19 bp):
ACATTGTATCGATACATGG
Found at i:7428 original size:20 final size:20
Alignment explanation
Indices: 7403--7455 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
7393 TACCACTGTT
*
7403 TGTATCGATACATGGT-ACAA
1 TGTATCGATACATGATGA-AA
*
7423 TGTATCGATACATGATGAAT
1 TGTATCGATACATGATGAAA
7443 TGTATCGATACAT
1 TGTATCGATACAT
7456 TGCTTGTAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 29 0.97
21 1 0.03
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.34
Consensus pattern (20 bp):
TGTATCGATACATGATGAAA
Found at i:10606 original size:16 final size:14
Alignment explanation
Indices: 10582--10652 Score: 65
Period size: 15 Copynumber: 4.9 Consensus size: 14
10572 TACTATGTGT
10582 AAAAAAACAAAAGAA
1 AAAAAAACAAAA-AA
*
10597 AAAGAAAAC--AATA
1 AAA-AAAACAAAAAA
10610 AAAAAAACAAAATAA
1 AAAAAAACAAAA-AA
*
10625 ACAAAAACAAAAAA
1 AAAAAAACAAAAAA
10639 AAACAAACACAAAA
1 AAA-AAA-ACAAAA
10653 TAGAAGAAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
12 5 0.11
13 4 0.09
14 8 0.17
15 18 0.39
16 11 0.24
ACGTcount: A:0.83, C:0.11, G:0.03, T:0.03
Consensus pattern (14 bp):
AAAAAAACAAAAAA
Found at i:10612 original size:14 final size:13
Alignment explanation
Indices: 10581--10647 Score: 55
Period size: 14 Copynumber: 4.9 Consensus size: 13
10571 ATACTATGTG
10581 TAAAAAAACAA-AA
1 TAAAAAAA-AACAA
*
10594 GAAAAAGAAAACAA
1 TAAAAA-AAAACAA
*
10608 TAAAAAAAACAAAA
1 TAAAAAAAA-ACAA
*
10622 TAAACAAAAACAA
1 TAAAAAAAAACAA
*
10635 AAAAAAACAAACA
1 TAAAAAA-AAACA
10648 CAAAATAGAA
Statistics
Matches: 43, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
13 18 0.42
14 25 0.58
ACGTcount: A:0.82, C:0.10, G:0.03, T:0.04
Consensus pattern (13 bp):
TAAAAAAAAACAA
Found at i:10614 original size:10 final size:9
Alignment explanation
Indices: 10582--10652 Score: 54
Period size: 9 Copynumber: 7.4 Consensus size: 9
10572 TACTATGTGT
10582 AAAAAAACA
1 AAAAAAACA
10591 AAAGAAAA-A
1 AAA-AAAACA
* *
10600 GAAAACAATA
1 -AAAAAAACA
10610 AAAAAAACA
1 AAAAAAACA
*
10619 AAATAAACA
1 AAAAAAACA
*
10628 AAAACAAAAA
1 AAAA-AAACA
10638 AAAACAAACA
1 AAAA-AAACA
10648 CAAAA
1 -AAAA
10653 TAGAAGAAAA
Statistics
Matches: 50, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
9 25 0.50
10 21 0.42
11 4 0.08
ACGTcount: A:0.83, C:0.11, G:0.03, T:0.03
Consensus pattern (9 bp):
AAAAAAACA
Found at i:10620 original size:28 final size:25
Alignment explanation
Indices: 10582--10645 Score: 83
Period size: 28 Copynumber: 2.4 Consensus size: 25
10572 TACTATGTGT
10582 AAAAAAACAAAAGAAAAAGAAAACAATA
1 AAAAAAACAAAAGAAAAA-AAAAC-A-A
* *
10610 AAAAAAACAAAATAAACAAAAACAA
1 AAAAAAACAAAAGAAAAAAAAACAA
10635 AAAAAAACAAA
1 AAAAAAACAAA
10646 CACAAAATAG
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
25 12 0.35
26 1 0.03
27 5 0.15
28 16 0.47
ACGTcount: A:0.84, C:0.09, G:0.03, T:0.03
Consensus pattern (25 bp):
AAAAAAACAAAAGAAAAAAAAACAA
Found at i:11498 original size:66 final size:61
Alignment explanation
Indices: 11366--11637 Score: 271
Period size: 61 Copynumber: 4.3 Consensus size: 61
11356 TTTATTCACT
* * * * *
11366 AGTTGGTGGCACTTTTTAGTCCTCAAGGAGCAGGACACCTTTTTCTTTTTA-AACCCACACA
1 AGTTGGTGGCAC-TTTTAGTCCTCAAAGAGTAGGACACTTTTTTCCTTTTAGAGCCCACACA
*
11427 AGTTGGTTGCAGCTTTTAGTCCTCAAAGAGTAGGACAACTTTTCTTTTCCTTTTAGAGCCCACAC
1 AGTTGGTGGCA-CTTTTAGTCCTCAAAGAGTAGGAC-AC--TT-TTTTCCTTTTAGAGCCCACAC
11492 A
61 A
* *
11493 AGTTGGTGGTACCTTTTAGTCCTCAAAGAGTAGGACA-TTTTTTCCTTTTAAAAGCCCACACA
1 AGTTGGTGGCA-CTTTTAGTCCTCAAAGAGTAGGACACTTTTTTCCTTTT-AGAGCCCACACA
** * * * *
11555 AGTTACTGGCACCTTTAGTCCTTAAAGAGTAAGACACTTTTCTTTTTCTTTT-GAAGCCCACACA
1 AGTTGGTGGCACTTTTAGTCCTCAAAGAGTAGGACAC--TT-TTTTCCTTTTAG-AGCCCACACA
*
11619 AGTTGGTGACACCTTTTAG
1 AGTTGGTGGCA-CTTTTAG
11638 GATGCCTTTT
Statistics
Matches: 176, Mismatches: 22, Indels: 22
0.80 0.10 0.10
Matches are distributed among these distances:
61 63 0.36
62 24 0.14
64 21 0.12
65 26 0.15
66 42 0.24
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (61 bp):
AGTTGGTGGCACTTTTAGTCCTCAAAGAGTAGGACACTTTTTTCCTTTTAGAGCCCACACA
Found at i:11733 original size:113 final size:112
Alignment explanation
Indices: 11532--11750 Score: 325
Period size: 113 Copynumber: 1.9 Consensus size: 112
11522 GTAGGACATT
* * *
11532 TTTTCCTTTTAAAAGCCCACACAAGTTACTGGCACCTTTAGTCCTTAAAGAGTAAGACACTTTTC
1 TTTTCCTTTTAAAAGCCCACACAAGTTACTGGCACCTTTAGACCTCAAAGAATAAGACACTTTTC
* *
11597 TTTTTCTTTTGAAGCCCACACAAGTTGGT-GACACCTTTTAGGATGCC
66 TTTTTCTTTTAAAGCCCACACAAGTTGCTAG-CACCTTTTAGGATGCC
* * *
11644 TTTTCCTTTTAAAAGCCTACACAAGTTGA-TGGCACCTTTTAGACCTCAAAGAATAGGGCACTTT
1 TTTTCCTTTTAAAAGCCCACACAAGTT-ACTGGCACC-TTTAGACCTCAAAGAATAAGACACTTT
11708 TCTTTTTCTTTTAAAGCCCACACAAGTTGCTAGCACCTTTTAG
64 TCTTTTTCTTTTAAAGCCCACACAAGTTGCTAGCACCTTTTAG
11751 CCCACAAAAA
Statistics
Matches: 96, Mismatches: 8, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
112 33 0.34
113 62 0.65
114 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.35
Consensus pattern (112 bp):
TTTTCCTTTTAAAAGCCCACACAAGTTACTGGCACCTTTAGACCTCAAAGAATAAGACACTTTTC
TTTTTCTTTTAAAGCCCACACAAGTTGCTAGCACCTTTTAGGATGCC
Found at i:11798 original size:62 final size:62
Alignment explanation
Indices: 11709--12126 Score: 446
Period size: 62 Copynumber: 6.6 Consensus size: 62
11699 GGGCACTTTT
* * * ** * *
11709 CTTTTTC-TTTTAAAGCCCACACAAGTTGCTAGCACCTTTTAGCCCACAAAAAGCAAGACAC
1 CTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCTTCAAAGAGCAAGATAC
* * * *
11770 CTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACTTTTTACTCTTCAAAGAGCAGGATTC
1 CTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCTTCAAAGAGCAAGATAC
* * *
11832 CTTTTTCTTTTTAAAGGCCACACAAGTTGGTGGCACCTTTTAGTCTTCCAAA-AGCATGATGC
1 CTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCTT-CAAAGAGCAAGATAC
* * * * *
11894 CTTTCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAATCCTCAAAGAGTAAGATG
1 C--T--TTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCTTCAAAGAGCAAGATA
11959 C
62 C
* *
11960 CTTTTTCTTTTAAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCTTCAAAGAGCAGGATA-
1 CTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCTTCAAAGAGCAAGATAC
* * * * *
12021 CTTTTTCCTCTTTAAAAGCCCACACAAGTTGGTGACACCTTTTAGTCCTCAAAGAGCAGGATGCC
1 CTTTTT-CT-TTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCTTCAAAGAGCAAGAT-AC
*
12086 TCTTTTTTTTTCTTTTTAAAAGTCCACACAAGTTGGTGGCA
1 -C----TTTTTCTTTTT-AAAGCCCACACAAGTTGGTGGCA
12127 TCTATCTACT
Statistics
Matches: 305, Mismatches: 35, Indels: 26
0.83 0.10 0.07
Matches are distributed among these distances:
61 13 0.04
62 150 0.49
63 54 0.18
64 2 0.01
65 4 0.01
66 51 0.17
68 3 0.01
69 23 0.08
70 5 0.02
ACGTcount: A:0.26, C:0.24, G:0.16, T:0.34
Consensus pattern (62 bp):
CTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCTTCAAAGAGCAAGATAC
Found at i:11920 original size:190 final size:190
Alignment explanation
Indices: 11636--12120 Score: 584
Period size: 190 Copynumber: 2.5 Consensus size: 190
11626 GACACCTTTT
* * * * * *
11636 AGGATGCC-TTTTCCTTTTAAAAGCCTACACAAGTTGATGGCACCTTTTAGACCTC-AAAGAAT-
1 AGGATTCCTTTTTCTTTTTAAAGGCC-ACACAAGTTGGTGGCACCTTTTAGTCCTCAAAAGCATG
* * *
11698 AGGGCACTTTTCTTTTTCTTTTAAAGCCCACACAAGTTGCTAGCACCTTTTAGCCCACAAAAAGC
65 A-TGCACTTTTCTTTTCCTTTTAAAGCCCACACAAGTTGCTAGCACCTTTTAACCCACAAAAAGC
* *
11763 AAGACACCTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACTTTTTACTCTTCAAAGAGC
129 AAGACACCTTTTTCTTTTAAAAGCCCACACAAGTTGGTGGCACCTTTTACTCTTCAAAGAGC
*
11825 AGGATTCCTTTTTCTTTTTAAAGGCCACACAAGTTGGTGGCACCTTTTAGTCTTCCAAAAGCATG
1 AGGATTCCTTTTTCTTTTTAAAGGCCACACAAGTTGGTGGCACCTTTTAGTCCT-CAAAAGCATG
* * * * * * *
11890 ATGC-CTTTCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAATCCTCAAAGAGTA
65 ATGCACTTTTCTTTTCCTTTTAAAGCCCACACAAGTTGCTAGCACCTTTTAACCCACAAAAAGCA
** *
11954 AGATGCCTTTTTCTTTTAAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCTTCAAAGAGC
130 AGACACCTTTTTCTTTTAAAAGCCCACACAAGTTGGTGGCACCTTTTACTCTTCAAAGAGC
* * * *
12015 AGGA-TACTTTTTCCTCTTTAAAAGCCCACACAAGTTGGTGACACCTTTTAGTCCTCAAAGAGCA
1 AGGATTCCTTTTT-CT-TTTTAAAGGCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAA-AGCA
* * * * *
12079 GGATGCCTCTTTTTTTTTCTTTTTAAAAGTCCACACAAGTTG
63 TGATG-CACTTTTCTTTTCCTTTT-AAAGCCCACACAAGTTG
12121 GTGGCATCTA
Statistics
Matches: 254, Mismatches: 32, Indels: 15
0.84 0.11 0.05
Matches are distributed among these distances:
189 39 0.15
190 133 0.52
191 51 0.20
192 2 0.01
193 13 0.05
194 16 0.06
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.34
Consensus pattern (190 bp):
AGGATTCCTTTTTCTTTTTAAAGGCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAAGCATGA
TGCACTTTTCTTTTCCTTTTAAAGCCCACACAAGTTGCTAGCACCTTTTAACCCACAAAAAGCAA
GACACCTTTTTCTTTTAAAAGCCCACACAAGTTGGTGGCACCTTTTACTCTTCAAAGAGC
Found at i:11939 original size:128 final size:124
Alignment explanation
Indices: 11644--12126 Score: 506
Period size: 128 Copynumber: 3.8 Consensus size: 124
11634 TTAGGATGCC
* * * ** *
11644 TTTTCCTTTTAAAAGCCTACACAAGTTGATGGCACCTTTTAGACCTCAAAGAATAGGGCACTTTT
1 TTTTCCTTTTAAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCA-GG-A--TTC
* * * ** * *
11709 CTTTTTC-TTTTAAAGCCCACACAAGTTGCTAGCACCTTTTAGCCCACAAAAAGCAAGACACCT
62 CTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCTTCCAAAAGCAAGA-TCCT
* * * *
11772 TTTT-CTTTTTAAAGCCCACACAAGTTGGTGGCACTTTTTACTCTTCAAAGAGCAGGATTCCTTT
1 TTTTCCTTTTAAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATTCCTTT
* *
11836 TTCTTTTTAAAGGCCACACAAGTTGGTGGCACCTTTTAGTCTTCCAAAAGCATGATGCCTTT
66 TTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCTTCCAAAAGCAAGAT-CC--T
* * * *
11898 CCTTTTCCTTTT-AAAGCCCACACAAGTTGGTGGCACCTTTTAATCCTCAAAGAGTAAGATGCCT
1 --TTTTCCTTTTAAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATTCCT
* * *
11962 TTTTCTTTTAAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCTT-CAAAGAGCAGGATACT
64 TTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCTTCCAAA-AGCAAGATCCT
*
12023 TTTTCCTCTTTAAAAGCCCACACAAGTTGGTGACACCTTTTAGTCCTCAAAGAGCAGGATGCCTC
1 TTTTCCT-TTTAAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGAT---TC
* *
12088 TTTTTTTTTCTTTTTAAAAGTCCACACAAGTTGGTGGCA
62 ---CTTTTTCTTTTT-AAAGCCCACACAAGTTGGTGGCA
12127 TCTATCTACT
Statistics
Matches: 301, Mismatches: 37, Indels: 30
0.82 0.10 0.08
Matches are distributed among these distances:
123 16 0.05
124 48 0.16
125 46 0.15
126 3 0.01
127 46 0.15
128 105 0.35
129 5 0.02
131 10 0.03
132 22 0.07
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.34
Consensus pattern (124 bp):
TTTTCCTTTTAAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATTCCTTT
TTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCTTCCAAAAGCAAGATCCT
Found at i:13952 original size:50 final size:51
Alignment explanation
Indices: 13838--13973 Score: 181
Period size: 50 Copynumber: 2.7 Consensus size: 51
13828 AAAAATGCTT
* *
13838 GAATGTATCGATACATTGAGAAATGTATGGATACATTTGGGTTAAAACCCA
1 GAATGTATCGATACAATGAGAAATGTATCGATACATTTGGGTTAAAACCCA
* *
13889 GAATGTATTGATACAATGA-AAACTGTCTCGATACATTTGGG-TAAAACCCA
1 GAATGTATCGATACAATGAGAAA-TGTATCGATACATTTGGGTTAAAACCCA
13939 GAATGTATCGATACAAT-A-AAGGATGTATCGATACA
1 GAATGTATCGATACAATGAGAA--ATGTATCGATACA
13974 AATTGTGAAA
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
49 3 0.04
50 39 0.51
51 34 0.45
ACGTcount: A:0.39, C:0.13, G:0.20, T:0.28
Consensus pattern (51 bp):
GAATGTATCGATACAATGAGAAATGTATCGATACATTTGGGTTAAAACCCA
Found at i:15175 original size:15 final size:15
Alignment explanation
Indices: 15141--15175 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
15131 AAGAAAGCAG
15141 TAAAAAAAACAAAAA
1 TAAAAAAAACAAAAA
* *
15156 CAAAAAAAACAAACA
1 TAAAAAAAACAAAAA
15171 TAAAA
1 TAAAA
15176 TAGAAAAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.83, C:0.11, G:0.00, T:0.06
Consensus pattern (15 bp):
TAAAAAAAACAAAAA
Found at i:15943 original size:62 final size:61
Alignment explanation
Indices: 15875--16034 Score: 189
Period size: 62 Copynumber: 2.6 Consensus size: 61
15865 TTGGTGGCAA
* * *
15875 CTTTTAGTCCTTAAGGAGTAGGATGC-CTTTTTCCTTTT-AAAGCCCACACAAGTTGGTAGTAC
1 CTTTTAGTCCTTAAAGAGTAGGA--CAC-TTTTCCTTTTAAAAGCCCACACAAGTTAGTAGCAC
* * * *
15937 CTTTTAGTCCTCAAAAAGTAGGACACTTTTCTTTTTAAAAAGCCCACACAAGTTAGTGGCAC
1 CTTTTAGTCCTTAAAGAGTAGGACACTTTTCCTTTT-AAAAGCCCACACAAGTTAGTAGCAC
* *
15999 CTTTTAGTCCTTAAAGAGCAGGACACTTTTCTTTTT
1 CTTTTAGTCCTTAAAGAGTAGGACACTTTTCCTTTT
16035 CTTTTGAAGC
Statistics
Matches: 85, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
60 10 0.12
61 1 0.01
62 74 0.87
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (61 bp):
CTTTTAGTCCTTAAAGAGTAGGACACTTTTCCTTTTAAAAGCCCACACAAGTTAGTAGCAC
Found at i:16099 original size:113 final size:115
Alignment explanation
Indices: 15963--16183 Score: 333
Period size: 113 Copynumber: 1.9 Consensus size: 115
15953 AGTAGGACAC
* *
15963 TTTTCTTTTTAAAAAGCCCACACAAGTTAGTGGCACCTTTTAGTCCTTAAAGAGCAGGACACTTT
1 TTTTCTTTTTAAAAAGCCCACACAAGTTAGTGGCACCTTTTAGTCCTCAAAAAGCAGGACACTTT
*
16028 TCTTTTTCTTTTGAAGCTCGCAC-AAA-TTGGTGGCACCTTTTAGGATGCCT
66 TCTTTTTCTTTTAAAGC-C-CACAAAAGTTGGTGGCACCTTTTAGGATGCCT
* * * *
16078 TTTTC-TTTT-AAAAGCCTACACAAGTTGGTGGCACCTTTTAGTCCTCAAAAAGTAGGGCACTTT
1 TTTTCTTTTTAAAAAGCCCACACAAGTTAGTGGCACCTTTTAGTCCTCAAAAAGCAGGACACTTT
16141 TCTTTTTCTTTTAAAGCCCACAAAAGTTGGTGGCACCTTTTAG
66 TCTTTTTCTTTTAAAGCCCACAAAAGTTGGTGGCACCTTTTAG
16184 TCCACAAAGA
Statistics
Matches: 97, Mismatches: 7, Indels: 6
0.88 0.06 0.05
Matches are distributed among these distances:
111 3 0.03
112 4 0.04
113 81 0.84
114 4 0.04
115 5 0.05
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.37
Consensus pattern (115 bp):
TTTTCTTTTTAAAAAGCCCACACAAGTTAGTGGCACCTTTTAGTCCTCAAAAAGCAGGACACTTT
TCTTTTTCTTTTAAAGCCCACAAAAGTTGGTGGCACCTTTTAGGATGCCT
Found at i:16246 original size:62 final size:62
Alignment explanation
Indices: 16075--16567 Score: 524
Period size: 62 Copynumber: 7.7 Consensus size: 62
16065 TTTTAGGATG
* * * * *
16075 CCTTTTTCTTTTAAAAGCCTACACAAGTTGGTGGCACCTTTTAGTCCTCAAAAAGTAGGGCA
1 CCTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACA
* * * *
16137 CTTTTCTTTTTC-TTTTAAAGCCCACAAAAGTTGGTGGCACCTTTTAGTCCACAAAGAGTAGGAA
1 C----CTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGAC
16201 A
62 A
* * * * *
16202 CTTTTTTCTTTTTAAAGCCCACACAAGTTGATGGTACCTTTTAGTCCTCAAAGAGCATGATA
1 CCTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACA
* * * *
16264 CCTTTTTCTTTTTAAAGGCCAAACAAGTTGGTGGCACCTTTTAGTCCTCCAAA-AGCACGACG
1 CCTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCT-CAAAGAGCAGGACA
* * * *
16326 CCTTTTCTTTTTCTTTTAAAGCCCACACAAATTGGTGGCACCTTTTAGTCCTCAATGAGTAGGAC
1 CC--TT-TTTCT-TTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGAC
*
16391 G
62 A
* **
16392 CCTTTTTCTTTTAAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATG
1 CCTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACA
* * * *
16454 CCTTTTCCTTTTTAAAGACCCACACAAGTTGCTGCCACCTTTTAGTCCTCAAAGAGCTGGATGC-
1 CCTTTTTCTTTTTAAAG-CCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGA--CA
16518 CTCTTTTTTTTTCTTTTTAAAAGCCCACACAAGTTGGTGGCACCTATTTA
1 C-C----TTTTTCTTTTT-AAAGCCCACACAAGTTGGTGGCACCT-TTTA
16568 CTTCCACCTT
Statistics
Matches: 365, Mismatches: 45, Indels: 34
0.82 0.10 0.08
Matches are distributed among these distances:
61 6 0.02
62 161 0.44
63 48 0.13
64 5 0.01
65 55 0.15
66 52 0.14
69 30 0.08
70 8 0.02
ACGTcount: A:0.26, C:0.24, G:0.16, T:0.34
Consensus pattern (62 bp):
CCTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACA
Found at i:16373 original size:128 final size:126
Alignment explanation
Indices: 16079--16567 Score: 508
Period size: 128 Copynumber: 3.8 Consensus size: 126
16069 AGGATGCCTT
* * * * **
16079 TTTCTTTTAAAAGCCTACACAAGTTGGTGGCACCTTTTAGTCCTCAAAAAGTAGGGCACTTTTCT
1 TTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCA-GG-A--TACCT
* * **
16144 TTTTC-TTTTAAAGCCCACAA-AAGTTGGTGGCACCTTTTAGTCCACAAAGAGTAGGAAAC-TTT
62 TTTTCTTTTTAAAGCCCA-AACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGAGCCTTTT
16206 -
126 C
* * *
16206 TTTCTTTTTAAAGCCCACACAAGTTGATGGTACCTTTTAGTCCTCAAAGAGCATGATACCTTTTT
1 TTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATACCTTTTT
* *
16271 CTTTTTAAAGGCCAAACAAGTTGGTGGCACCTTTTAGTCCTCCAAA-AGCACGACGCCTTTTC
66 CTTTTTAAAGCCCAAACAAGTTGGTGGCACCTTTTAGTCCT-CAAAGAGCAGGA-GCCTTTTC
* * * * **
16333 TTTTTCTTTTAAAGCCCACACAAATTGGTGGCACCTTTTAGTCCTCAATGAGTAGGACGCCTTTT
1 TTTCT-TTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATACCTTTT
* *
16398 TCTTTTAAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTC
65 TCTTTTTAAAGCCCAAACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGA-GCCTTTTC
* * * *
16461 ---CTTTTTAAAGACCCACACAAGTTGCTGCCACCTTTTAGTCCTCAAAGAGCTGGATGCCTCTT
1 TTTCTTTTTAAAG-CCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGAT-AC-C--
*
16523 TTTTTTTCTTTTTAAAAGCCCACACAAGTTGGTGGCACCTATTTA
61 --TTTTTCTTTTT-AAAGCCCAAACAAGTTGGTGGCACCT-TTTA
16568 CTTCCACCTT
Statistics
Matches: 306, Mismatches: 39, Indels: 28
0.82 0.10 0.08
Matches are distributed among these distances:
123 10 0.03
124 47 0.15
125 44 0.14
126 5 0.02
127 56 0.18
128 104 0.34
131 10 0.03
132 26 0.08
133 4 0.01
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.34
Consensus pattern (126 bp):
TTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATACCTTTTT
CTTTTTAAAGCCCAAACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGAGCCTTTTC
Found at i:16400 original size:190 final size:189
Alignment explanation
Indices: 16069--16567 Score: 655
Period size: 190 Copynumber: 2.6 Consensus size: 189
16059 GGCACCTTTT
* * * *
16069 AGGATGCCTTTTTC-TTTTAAAAGCCTACACAAGTTGGTGGCACCTTTTAGTCCTCAAAAAGTAG
1 AGGATACCTTTTTCTTTTTAAAGGCC-ACACAAGTTGGTGGCACCTTTTAGTCCTCCAAAAGCAG
*
16133 -GGCACTTTTCTTTTTCTTTTAAAGCCCACA-AAAGTTGGTGGCACCTTTTAGTCCACAAAGAGT
65 ACGC-CTTTTCTTTTTCTTTTAAAGCCCACACAAA-TTGGTGGCACCTTTTAGTCCACAAAGAGT
* * *
16196 AGGAAACTTTTTTCTTTTTAAAGCCCACACAAGTTGATGGTACCTTTTAGTCCTCAAAGAGC
128 AGGAAACCTTTTTCTTTTAAAAGCCCACACAAGTTGATGGCACCTTTTAGTCCTCAAAGAGC
* *
16258 ATGATACCTTTTTCTTTTTAAAGGCCAAACAAGTTGGTGGCACCTTTTAGTCCTCCAAAAGCACG
1 AGGATACCTTTTTCTTTTTAAAGGCCACACAAGTTGGTGGCACCTTTTAGTCCTCCAAAAGCA-G
* *
16323 ACGCCTTTTCTTTTTCTTTTAAAGCCCACACAAATTGGTGGCACCTTTTAGTCCTCAATGAGTAG
65 ACGCCTTTTCTTTTTCTTTTAAAGCCCACACAAATTGGTGGCACCTTTTAGTCCACAAAGAGTAG
** *
16388 GACGCCTTTTTCTTTTAAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGC
130 GAAACCTTTTTCTTTTAAAAGCCCACACAAGTTGATGGCACCTTTTAGTCCTCAAAGAGC
* * * * *
16448 AGGATGCCTTTTCCTTTTTAAAGACCCACACAAGTTGCTGCCACCTTTTAGTCCT-CAAAGAGCT
1 AGGATACCTTTTTCTTTTTAAAG-GCCACACAAGTTGGTGGCACCTTTTAGTCCTCCAAA-AGC-
* * * *
16512 GGATGCCTCTTTTTTTTTCTTTTTAAAAGCCCACACAAGTTGGTGGCACCTATTTA
63 AGACGCCT-TTTCTTTTTC-TTTT-AAAGCCCACACAAATTGGTGGCACCT-TTTA
16568 CTTCCACCTT
Statistics
Matches: 273, Mismatches: 26, Indels: 16
0.87 0.08 0.05
Matches are distributed among these distances:
189 46 0.17
190 144 0.53
191 41 0.15
192 9 0.03
193 4 0.01
194 25 0.09
195 4 0.01
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (189 bp):
AGGATACCTTTTTCTTTTTAAAGGCCACACAAGTTGGTGGCACCTTTTAGTCCTCCAAAAGCAGA
CGCCTTTTCTTTTTCTTTTAAAGCCCACACAAATTGGTGGCACCTTTTAGTCCACAAAGAGTAGG
AAACCTTTTTCTTTTAAAAGCCCACACAAGTTGATGGCACCTTTTAGTCCTCAAAGAGC
Found at i:17572 original size:50 final size:51
Alignment explanation
Indices: 17457--17577 Score: 172
Period size: 51 Copynumber: 2.4 Consensus size: 51
17447 AAAAATGCTT
* * * *
17457 GAATGTATCGATACATTGAGAAATGTATCGATATATCTGTGTTAAAACCCA
1 GAATGTATCGATACAATGAAAAATGTATCGATACATCTGTGGTAAAACCCA
** *
17508 GAATGTATTAATACAATGAAAAATGTATTGATACATCTG-GGTAAAACCCA
1 GAATGTATCGATACAATGAAAAATGTATCGATACATCTGTGGTAAAACCCA
17558 GAATGTATCGATACAATGAA
1 GAATGTATCGATACAATGAA
17578 GGTTGCATCG
Statistics
Matches: 61, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
50 28 0.46
51 33 0.54
ACGTcount: A:0.41, C:0.12, G:0.17, T:0.29
Consensus pattern (51 bp):
GAATGTATCGATACAATGAAAAATGTATCGATACATCTGTGGTAAAACCCA
Found at i:17591 original size:50 final size:51
Alignment explanation
Indices: 17457--17592 Score: 159
Period size: 50 Copynumber: 2.7 Consensus size: 51
17447 AAAAATGCTT
* * *
17457 GAATGTATCGATACATTG-AGAAATGTATCGATATATCTGTGTTAAAACCCA
1 GAATGTATCGATACAATGAAG-AATGTATCGATACATCTGTGGTAAAACCCA
** * *
17508 GAATGTATTAATACAATGAAAAATGTATTGATACATCTG-GGTAAAACCCA
1 GAATGTATCGATACAATGAAGAATGTATCGATACATCTGTGGTAAAACCCA
** *
17558 GAATGTATCGATACAATGAAGGTTGCATCGATACA
1 GAATGTATCGATACAATGAAGAATGTATCGATACA
17593 ATTTGTGAAA
Statistics
Matches: 70, Mismatches: 14, Indels: 3
0.80 0.16 0.03
Matches are distributed among these distances:
50 38 0.54
51 31 0.44
52 1 0.01
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.29
Consensus pattern (51 bp):
GAATGTATCGATACAATGAAGAATGTATCGATACATCTGTGGTAAAACCCA
Found at i:18767 original size:15 final size:14
Alignment explanation
Indices: 18737--18805 Score: 70
Period size: 14 Copynumber: 4.8 Consensus size: 14
18727 TACGTGTAAA
18737 AAAACAAAAGAAAAAG
1 AAAAC-AAA-AAAAAG
18753 AAAACAATAAAAAAG
1 AAAACAA-AAAAAAG
*
18768 AAAA-AAATAAACA-
1 AAAACAAA-AAAAAG
18781 AAAACAAAAAAAAG
1 AAAACAAAAAAAAG
*
18795 AACACAAAAAA
1 AAAACAAAAAA
18806 GAAAAAAAGG
Statistics
Matches: 46, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
13 9 0.20
14 19 0.41
15 12 0.26
16 6 0.13
ACGTcount: A:0.83, C:0.09, G:0.06, T:0.03
Consensus pattern (14 bp):
AAAACAAAAAAAAG
Found at i:18772 original size:27 final size:26
Alignment explanation
Indices: 18735--18810 Score: 82
Period size: 26 Copynumber: 2.8 Consensus size: 26
18725 ACTACGTGTA
* *
18735 AAAAAACAAAAGAAAAAGAAAACAAT
1 AAAAAAGAAAAAAAAAAGAAAACAAT
*
18761 AAAAAAGAAAAAAATAAACAAAAACAA-
1 AAAAAAGAAAAAAA-AAA-GAAAACAAT
*
18788 AAAAAAGAACACAAAAAAGAAAA
1 AAAAAAGAA-AAAAAAAAGAAAA
18811 AAAGGAAAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
26 16 0.38
27 15 0.36
28 11 0.26
ACGTcount: A:0.83, C:0.08, G:0.07, T:0.03
Consensus pattern (26 bp):
AAAAAAGAAAAAAAAAAGAAAACAAT
Found at i:18798 original size:18 final size:18
Alignment explanation
Indices: 18734--18814 Score: 67
Period size: 19 Copynumber: 4.3 Consensus size: 18
18724 TACTACGTGT
18734 AAAAA-AACAAAAGAAAAA
1 AAAAAGAACAAAA-AAAAA
* * *
18752 GAAAACAATAAAAAAGAAA
1 AAAAAGAACAAAAAA-AAA
*
18771 AAAATA-AACAAAAACAAA
1 AAAA-AGAACAAAAAAAAA
18789 AAAAAGAACACAAAAAAGAA
1 AAAAAGAACA-AAAAAA-AA
18809 AAAAAG
1 AAAAAG
18815 GAAAAAATAG
Statistics
Matches: 51, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
17 1 0.02
18 17 0.33
19 24 0.47
20 9 0.18
ACGTcount: A:0.83, C:0.07, G:0.07, T:0.02
Consensus pattern (18 bp):
AAAAAGAACAAAAAAAAA
Found at i:19622 original size:66 final size:62
Alignment explanation
Indices: 19489--19761 Score: 282
Period size: 66 Copynumber: 4.3 Consensus size: 62
19479 TTTATTCACT
* * *
19489 AGTTGGTGGCACATTTTAGTCCTCAAGGAATAGGACACCTTTTTT--TTTTAAAGCCCACACA
1 AGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGACA-CTTTTTTCCTTTTAAAGCCCACACA
* *
19550 AGTTGGTGACACCTTTTAGTCCTTAAAGAGTAGGACACCTTTCCTTTTCCTTTTAAAGCCCACAC
1 AGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGACA-C-TT--TTTTCCTTTTAAAGCCCACAC
19615 A
62 A
* * * * *
19616 AATTGGTGGCATCTTTTAGTCCTCAAAGAGTAGGGCAC-TTTTACCGTTTAAAAGCCCACACA
1 AGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGACACTTTTTTCC-TTTTAAAGCCCACACA
* * * * * * * *
19678 ATTTGGTGGCACCTTTTAGTCCTCGAAGAGCAAGACAGTTTTCTTTTTCTTTTGAAGCCCAAACA
1 AGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGACA--CTT-TTTTCCTTTTAAAGCCCACACA
19743 AGTTGGTGGCACCTTTTAG
1 AGTTGGTGGCACCTTTTAG
19762 GATGCCTTTT
Statistics
Matches: 177, Mismatches: 25, Indels: 16
0.81 0.11 0.07
Matches are distributed among these distances:
61 39 0.22
62 48 0.27
63 1 0.01
64 4 0.02
65 33 0.19
66 52 0.29
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.33
Consensus pattern (62 bp):
AGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGACACTTTTTTCCTTTTAAAGCCCACACA
Found at i:19736 original size:127 final size:124
Alignment explanation
Indices: 19489--20248 Score: 490
Period size: 127 Copynumber: 6.1 Consensus size: 124
19479 TTTATTCACT
* ** *
19489 AGTTGGTGGCACATTTTAGTCCTCAAGGAATAGGACACCTTTTTTTTTTAAAGCCCACACAAGTT
1 AGTTGGTGGCACATTTTAGTCCTCAAAG-ATA-GACACCTTTTCGTTTAAAAGCCCACACAAGTT
* * * *
19554 GGTGACACCTTTTAGTCCTTAAAGAGTAGGACACCTTTCCTTTTCCTTTTAAAGCCCACACA
64 GGTGACACCTTTTAGTCCTCAAAGAGTAAGACA-CTTTTCTTTTTCTTTTAAAGCCCACACA
* *
19616 AATTGGTGGCATC-TTTTAGTCCTCAAAGAGTAGGGCA-CTTTTACCGTTTAAAAGCCCACACAA
1 AGTTGGTGGCA-CATTTTAGTCCTCAAAGA-TA-GACACCTTTT--CGTTTAAAAGCCCACACAA
* * * * * * *
19679 TTTGGTGGCACCTTTTAGTCCTCGAAGAGCAAGACAGTTTTCTTTTTCTTTTGAAGCCCAAACA
61 GTTGGTGACACCTTTTAGTCCTCAAAGAGTAAGACACTTTTCTTTTTCTTTTAAAGCCCACACA
* * *
19743 AGTTGGTGGCACCTTTTAG--------GAT-G---CCTTTTCGTTTTAAAAGCCTACAAAAGTTG
1 AGTTGGTGGCACATTTTAGTCCTCAAAGATAGACACCTTTTCG-TTTAAAAGCCCACACAAGTTG
* * * * *
19796 GTGGCACGTTTTAGTCCTCAAAGAGTAAGGCACTTTTCTTTTTCCTTTAAAGTCCACACA
65 GTGACACCTTTTAGTCCTCAAAGAGTAAGACACTTTTCTTTTTCTTTTAAAGCCCACACA
* * * * *
19856 AGTTGGTGGCACTTTTTAGTCCACAAAGATCTAGACACCTTTTTCTTTTTAAAGCCCACACTAGT
1 AGTTGGTGGCACATTTTAGTCCTCAAAGA--TAGACACC-TTTTCGTTTAAAAGCCCACACAAGT
* * * ** * *
19921 TGGTGACACCTTTTAGTCCTAAAAGAATAGGATGC-TTT-TTTCT-TTTTAAAGCCCACATA
63 TGGTGACACCTTTTAGTCCTCAAAGAGTAAGACACTTTTCTTTTTCTTTTAAAGCCCACACA
* ** * * * * * *
19980 AGTTGATGGCATGTTTTAGTCCTTAAAACACAGGATGC-CTTTCTTTTTCTTTTTAAAGCCTACA
1 AGTTGGTGGCACATTTTAGTCC-TCAAAGATA-GA--CAC---C-TTTTCGTTTAAAAGCCCACA
** * * * *
20044 CAAGTTGGTGGTACCTTTCAGTCCTTAAA-ATGTAGGACGC----CTTTTTCTTTTAAAAGCCCA
58 CAAGTTGGTGACACCTTTTAGTCCTCAAAGA-GTAAGACACTTTTCTTTTTCTTTT-AAAGCCCA
20104 CACA
121 CACA
* * * * * * *
20108 A-ATGGTGACACCTTTTAGTCCTCAAAGAGCAGGACACCTTTTCCTTTTTAAAAGCCCGCAGAAG
1 AGTTGGTGGCACATTTTAGTCCTCAAAGA-TA-GACACCTTTT-C-GTTTAAAAGCCCACACAAG
* * * *
20172 TTTGTG-GACCTTTTAGTCCTCAAAGAGCAAGATGCCTCTTTTTCTTTTTCCTTTTAAATGCCCA
62 TTGGTGACACCTTTTAGTCCTCAAAGAGTAAGA---CAC-TTTTCTTTTT-CTTTTAAA-GCCCA
20236 CACA
121 CACA
20240 AGTTGGTGG
1 AGTTGGTGG
20249 TACCTATCTA
Statistics
Matches: 499, Mismatches: 85, Indels: 92
0.74 0.13 0.14
Matches are distributed among these distances:
112 2 0.00
113 87 0.17
114 5 0.01
116 1 0.00
118 1 0.00
119 2 0.00
121 2 0.00
122 4 0.01
123 23 0.05
124 56 0.11
125 10 0.02
126 23 0.05
127 138 0.28
128 116 0.23
131 9 0.02
132 15 0.03
133 5 0.01
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.34
Consensus pattern (124 bp):
AGTTGGTGGCACATTTTAGTCCTCAAAGATAGACACCTTTTCGTTTAAAAGCCCACACAAGTTGG
TGACACCTTTTAGTCCTCAAAGAGTAAGACACTTTTCTTTTTCTTTTAAAGCCCACACA
Found at i:19860 original size:113 final size:113
Alignment explanation
Indices: 19662--19874 Score: 309
Period size: 113 Copynumber: 1.9 Consensus size: 113
19652 ACTTTTACCG
* * * *
19662 TTTAAAAGCCCACACAATTTGGTGGCACCTTTTAGTCCTCGAAGAGCAAGACAGTTTTCTTTTTC
1 TTTAAAAGCCCACAAAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAAGACACTTTTCTTTTTC
* *
19727 TTTTGAAGCCCAAACAAGTTGGTGGCACCTTTTAGGATGCCTTTTCGT
66 CTTTAAAGCCCAAACAAGTTGGTGGCACCTTTTAGGATGCCTTTTCGT
* * * *
19775 TTTAAAAGCCTACAAAAGTTGGTGGCACGTTTTAGTCCTCAAAGAGTAAGGCACTTTTCTTTTTC
1 TTTAAAAGCCCACAAAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAAGACACTTTTCTTTTTC
* * *
19840 CTTTAAAGTCCACACAAGTTGGTGGCACTTTTTAG
66 CTTTAAAGCCCAAACAAGTTGGTGGCACCTTTTAG
19875 TCCACAAAGA
Statistics
Matches: 87, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
113 87 1.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (113 bp):
TTTAAAAGCCCACAAAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAAGACACTTTTCTTTTTC
CTTTAAAGCCCAAACAAGTTGGTGGCACCTTTTAGGATGCCTTTTCGT
Found at i:19913 original size:175 final size:171
Alignment explanation
Indices: 19592--19936 Score: 403
Period size: 175 Copynumber: 2.0 Consensus size: 171
19582 GGACACCTTT
*
19592 CCTTTTCCTTTTAAAGCCCACACAAATTGGTGGCATCTTTTAGTCCTCAAAGAGTAGGGCACTTT
1 CCTTTTCCTTTTAAAGCCCACACAAATTGGTGGCATCTTTTAGTCCTCAAAGAGTAAGGCACTTT
* * * * *
19657 TACCGTTTAAAAGCCCACACAATTTGGTGGCACCTTTTAGTCCTCGAAGAGCAAGACAGTTTTCT
66 TACCCTTTAAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCACAAAGAGCAAGACA---TCCT
* *
19722 TTTTCTTTTGAAGCCCAAACAAGTTGGTGGCACCTTTTAGGATG
128 TTTTCTTTTAAAGCCCAAACAAGTTGGTGACACCTTTTAGGATG
* *
19766 CCTTTTCGTTTTAAAAGCCTACA-AAAGTTGGTGGCA-CGTTTTAGTCCTCAAAGAGTAAGGCAC
1 CCTTTTCCTTTT-AAAGCCCACACAAA-TTGGTGGCATC-TTTTAGTCCTCAAAGAGTAAGGCAC
* * * *
19829 TTTT-CTTTTTCCTTT-AAAGTCCACACAAGTTGGTGGCACTTTTTAGTCCACAAAGATCTAGAC
63 TTTTAC-----CCTTTAAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCACAAAGAGCAAGAC
* *
19892 A-CCTTTTTCTTTTTAAAGCCCACACTAGTTGGTGACACCTTTTAG
123 ATCCTTTTTC-TTTTAAAGCCCAAACAAGTTGGTGACACCTTTTAG
19937 TCCTAAAAGA
Statistics
Matches: 146, Mismatches: 16, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
174 23 0.16
175 77 0.53
178 42 0.29
179 4 0.03
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.34
Consensus pattern (171 bp):
CCTTTTCCTTTTAAAGCCCACACAAATTGGTGGCATCTTTTAGTCCTCAAAGAGTAAGGCACTTT
TACCCTTTAAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCACAAAGAGCAAGACATCCTTTT
TCTTTTAAAGCCCAAACAAGTTGGTGACACCTTTTAGGATG
Found at i:20049 original size:66 final size:64
Alignment explanation
Indices: 19760--20220 Score: 312
Period size: 62 Copynumber: 7.3 Consensus size: 64
19750 GGCACCTTTT
* * * * * *
19760 AGGATGC-C-TTTTCGTTTTAAAAGCCTACAAAAGTTGGTGGCACGTTTTAGTCCTCAAAGAGTA
1 AGGATGCTCTTTTTC-TTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTTAAA-AGAA
19823 -
64 C
** * * *
19823 AGGCACTTTTCTTTTTC-CTTTAAAGTCCACACAAGTTGGTGGCACTTTTTAGTCC--ACAAAGA
1 AGG-A-TGCTCTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTTA-AAAGA
*
19885 TC
63 AC
** * * *
19887 TA-GACAC-CTTTTTCTTTTTAAAGCCCACACTAGTTGGTGACACCTTTTAGTCC-TAAAAGAAT
1 -AGGATGCTCTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTTAAAAGAAC
* * ** *
19949 AGGATGCT-TTTTTCTTTTTAAAGCCCACATAAGTTGATGGCATGTTTTAGTCCTTAAAA-CAC
1 AGGATGCTCTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTTAAAAGAAC
* * *
20011 AGGATGCCTTTCTTTTTCTTTTTAAAGCCTACACAAGTTGGTGGTACCTTTCAGTCCTTAAAATG
1 AGGATG-C--TCTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTTAAAA-G
*
20076 --T
62 AAC
* * * * * *
20077 AGGACGC-CTTTTTCTTTTAAAAGCCCACACAA-ATGGTGACACCTTTTAGTCC-TCAAAGAGC
1 AGGATGCTCTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTTAAAAGAAC
** * * * * * *
20138 AGGACAC-CTTTTCCTTTTTAAAAGCCCGCAGAAGTTTGTGG-ACCTTTTAGTCC-TCAAAGAGC
1 AGGATGCTCTTTTTCTTTTT-AAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTTAAAAGAAC
*
20200 AAGATGCCTCTTTTTCTTTTT
1 AGGATG-CTCTTTTTCTTTTT
20221 CCTTTTAAAT
Statistics
Matches: 315, Mismatches: 59, Indels: 47
0.75 0.14 0.11
Matches are distributed among these distances:
59 1 0.00
60 4 0.01
61 40 0.13
62 145 0.46
63 19 0.06
64 15 0.05
65 36 0.11
66 50 0.16
67 5 0.02
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (64 bp):
AGGATGCTCTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTTAAAAGAAC
Found at i:20124 original size:189 final size:191
Alignment explanation
Indices: 19766--20253 Score: 498
Period size: 189 Copynumber: 2.6 Consensus size: 191
19756 TTTTAGGATG
* * * * * *
19766 CCTTTT-CGTTTTAAAAGCCTACAAAAGTTGGTGGCACGTTTTAGTCCTCAAAGAGTAAG--G-C
1 CCTTTTCCTTTTTAAAAGCCCACAGAAGTTTGTGG-ACCTTTTAGTCCTCAAAGAGCAAGATGCC
* * * * *
19827 ACTTTTCTTTTTCCTTTAAAGTCCACACAAGTTGGTGGCACTTTTTAGTCCACAAAGATCTAGAC
65 TCTTTTCTTTTTCTTTTAAAG-CCACACAAGTTGGTGGTACCTTTCAGTCCACAAAGATCTAGAC
* ** * **
19892 ACCTTTTTCTTTTTAAAGCCCACACTAGTTGGTGACACCTTTTAGTCCTAAAAGAATAGGATG
129 ACCTTTTTCTTTTAAAAGCCCACACTAAATGGTGACACCTTTTAGTCCTAAAAGAACAGGACA
* * * ** *
19955 CTTTTTTCTTTTT-AAAGCCCACATAAG-TTGATGGCATGTTTTAGTCCTTAAA-A-CACAGGAT
1 CCTTTTCCTTTTTAAAAGCCCACAGAAGTTTG-TGG-ACCTTTTAGTCCTCAAAGAGCA-A-GAT
** *
20016 G-C-C-TTTCTTTTTCTTTTTAAAGCCTACACAAGTTGGTGGTACCTTTCAGTCCTTAAA-ATGT
62 GCCTCTTTTCTTTTTC-TTTTAAAGCC-ACACAAGTTGGTGGTACCTTTCAGTCCACAAAGATCT
* * *
20077 AGGACGCCTTTTTCTTTTAAAAGCCCACAC-AAATGGTGACACCTTTTAGTCCTCAAAGAGCAGG
125 A-GACACCTTTTTCTTTTAAAAGCCCACACTAAATGGTGACACCTTTTAGTCCTAAAAGAACAGG
20141 ACA
189 ACA
*
20144 CCTTTTCCTTTTTAAAAGCCCGCAGAAGTTTGTGGACCTTTTAGTCCTCAAAGAGCAAGATGCCT
1 CCTTTTCCTTTTTAAAAGCCCACAGAAGTTTGTGGACCTTTTAGTCCTCAAAGAGCAAGATGCCT
20209 CTTTTTCTTTTTCCTTTTAAATGCCCACACAAGTTGGTGGTACCT
66 C-TTTTCTTTTT-CTTTTAAA-G-CCACACAAGTTGGTGGTACCT
20254 ATCTACTTCA
Statistics
Matches: 248, Mismatches: 31, Indels: 35
0.79 0.10 0.11
Matches are distributed among these distances:
187 1 0.00
188 4 0.02
189 112 0.45
190 84 0.34
191 8 0.03
193 16 0.06
194 21 0.08
195 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.35
Consensus pattern (191 bp):
CCTTTTCCTTTTTAAAAGCCCACAGAAGTTTGTGGACCTTTTAGTCCTCAAAGAGCAAGATGCCT
CTTTTCTTTTTCTTTTAAAGCCACACAAGTTGGTGGTACCTTTCAGTCCACAAAGATCTAGACAC
CTTTTTCTTTTAAAAGCCCACACTAAATGGTGACACCTTTTAGTCCTAAAAGAACAGGACA
Found at i:21745 original size:51 final size:51
Alignment explanation
Indices: 21678--21796 Score: 168
Period size: 51 Copynumber: 2.3 Consensus size: 51
21668 TTTGCAAAGA
*
21678 AAATGTATCGATACATTTTTCACTATATCGATACAATCTAGG-TTTTGACCC
1 AAATGTATCGATACATTATTCACTATATCGATACAATCTAGGTTTTTGA-CC
* * *
21729 AAATGTATCGATACATTATTCATTGTATCGATACATTCTAGGTTTTTGACC
1 AAATGTATCGATACATTATTCACTATATCGATACAATCTAGGTTTTTGACC
*
21780 AAATTGCATCGATACAT
1 AAA-TGTATCGATACAT
21797 GCCAGCTATT
Statistics
Matches: 61, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
51 43 0.70
52 18 0.30
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.38
Consensus pattern (51 bp):
AAATGTATCGATACATTATTCACTATATCGATACAATCTAGGTTTTTGACC
Found at i:24270 original size:79 final size:79
Alignment explanation
Indices: 24156--24692 Score: 536
Period size: 79 Copynumber: 6.8 Consensus size: 79
24146 TTACTTCTAC
* * * *
24156 AATATTGAATTTTTCATC-AAGGGGATACTCGAACCCCATTATTTCTGAGGGGATACTCCAACCC
1 AATATTAAAATTTTCATCTCAGGGG-TACTCCAACCCCATTATTTCTGAGGGGATACTCCAACCC
24220 TATTTTTATTTTTGA
65 TATTTTTATTTTTGA
* * * *
24235 AATATCAAAATTTTCATCTTAGGGGTACTCCAA-CCCATTAGTTT-TGAAGGGATGCTCCAACCC
1 AATATTAAAATTTTCATCTCAGGGGTACTCCAACCCCATTA-TTTCTGAGGGGATACTCCAACCC
* **
24298 CATTTTTATTTTCAA
65 TATTTTTATTTTTGA
* *
24313 AATATTAAAATTTTCATCTC-GGGGATACTCTAACCCCATTATTT-TCAAGGGGATACTCCAACC
1 AATATTAAAATTTTCATCTCAGGGG-TACTCCAACCCCATTATTTCT-GAGGGGATACTCCAACC
*
24376 CTATTTTTATTTTAGA
64 CTATTTTTATTTTTGA
* * * * * *
24392 AATATTAAAATTTTCATCTCAGGGGTACTCCAACTCCGTTATTTTTGAAGGGATACTCTAACCTT
1 AATATTAAAATTTTCATCTCAGGGGTACTCCAACCCCATTATTTCTGAGGGGATACTCCAACC-C
* * *
24457 TTTTTTTTTATTTTCA
65 TATTTTTAT-TTTTGA
* * * * * *
24473 AAGCATTAAATTTTTCATCTC-GGGGATACTTCAACCGCATTATTTCTAAGGGGTTACTCCAACC
1 AA-TATTAAAATTTTCATCTCAGGGG-TACTCCAACCCCATTATTTCTGAGGGGATACTCCAA-C
* *
24537 CCT-TTTTTATTTCTAA
63 CCTATTTTTATTTTTGA
* * * ** * *
24553 AATGTTAAATTTTTCATCTCAGGGATACTCCAACCCCGCTATTTTTGAGGGGATACTCCAACCCC
1 AATATTAAAATTTTCATCTCAGGGGTACTCCAACCCCATTATTTCTGAGGGGATACTCCAACCCT
24618 ATTTTTATTTTTGA
66 ATTTTTATTTTTGA
* * * *
24632 AATATTACAATTTTCATCATCA-GGGTACTCCAATCCC-GTA-TTCAGAGGGGATACTCCAACC
1 AATATTAAAATTTTCATC-TCAGGGGTACTCCAACCCCATTATTTCTGAGGGGATACTCCAACC
24693 TTGTTTCTTT
Statistics
Matches: 377, Mismatches: 66, Indels: 32
0.79 0.14 0.07
Matches are distributed among these distances:
77 23 0.06
78 70 0.19
79 193 0.51
80 29 0.08
81 16 0.04
82 44 0.12
83 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.13, T:0.38
Consensus pattern (79 bp):
AATATTAAAATTTTCATCTCAGGGGTACTCCAACCCCATTATTTCTGAGGGGATACTCCAACCCT
ATTTTTATTTTTGA
Found at i:24546 original size:161 final size:157
Alignment explanation
Indices: 24163--24692 Score: 610
Period size: 161 Copynumber: 3.4 Consensus size: 157
24153 TACAATATTG
** *
24163 AATTTTTCATCAAGGGGATACTCGAACCCCATTATTTCTGAGGGGATACTCCAACCCTATTTTTA
1 AATTTTTCATCTCGGGGATACTCGAACCCCATTATTTCTAAGGGGATACTCCAACCCTATTTTTA
* * * * * *
24228 TTTTTGAAATATCAAAATTTTCATCTTAGGGGTACTCCAACCCATTAGTTTTGAAGGGATGCTCC
66 TTTTAGAAATATTAAAATTTTCATCTCAGGGGTACTCCAACCCGTTATTTTTGAAGGGATACTCC
*
24293 AACCCCATTTTTATTTTCAAAATATTA
131 AACCCCATTTTTATTTTCAAAACATTA
* *
24320 AAATTTTCATCTCGGGGATACTCTAACCCCATTATTT-TCAAGGGGATACTCCAACCCTATTTTT
1 AATTTTTCATCTCGGGGATACTCGAACCCCATTATTTCT-AAGGGGATACTCCAACCCTATTTTT
24384 ATTTTAGAAATATTAAAATTTTCATCTCAGGGGTACTCCAACTCCGTTATTTTTGAAGGGATACT
65 ATTTTAGAAATATTAAAATTTTCATCTCAGGGGTACTCCAAC-CCGTTATTTTTGAAGGGATACT
* *** *
24449 CTAACCTTTTTTTTTTTATTTTCAAAGCATTA
129 CCAACC---CCATTTTTATTTTCAAAACATTA
* *
24481 AATTTTTCATCTCGGGGATACTTC-AACCGCATTATTTCTAAGGGGTTACTCCAACCCCT-TTTT
1 AATTTTTCATCTCGGGGATAC-TCGAACCCCATTATTTCTAAGGGGATACTCCAA-CCCTATTTT
* * * * *
24544 TATTTCTA-AAATGTTAAATTTTTCATCTCAGGGATACTCCAACCCCGCTATTTTTGAGGGGATA
64 TATTT-TAGAAATATTAAAATTTTCATCTCAGGGGTACTCCAA-CCCGTTATTTTTGAAGGGATA
** *
24608 CTCCAACCCCATTTTTATTTTTGAAATATTA
127 CTCCAACCCCATTTTTATTTTCAAAACATTA
* * * *
24639 CAA-TTTTCATCATCAGGG-TACTCCAATCCC-GTA-TTC-AGAGGGGATACTCCAACC
1 -AATTTTTCATC-TCGGGGATACTCGAACCCCATTATTTCTA-AGGGGATACTCCAACC
24693 TTGTTTCTTT
Statistics
Matches: 321, Mismatches: 38, Indels: 30
0.83 0.10 0.08
Matches are distributed among these distances:
155 3 0.01
156 17 0.05
157 100 0.31
158 55 0.17
159 7 0.02
161 129 0.40
162 10 0.03
ACGTcount: A:0.28, C:0.22, G:0.13, T:0.38
Consensus pattern (157 bp):
AATTTTTCATCTCGGGGATACTCGAACCCCATTATTTCTAAGGGGATACTCCAACCCTATTTTTA
TTTTAGAAATATTAAAATTTTCATCTCAGGGGTACTCCAACCCGTTATTTTTGAAGGGATACTCC
AACCCCATTTTTATTTTCAAAACATTA
Found at i:28546 original size:146 final size:146
Alignment explanation
Indices: 28263--28559 Score: 341
Period size: 146 Copynumber: 2.0 Consensus size: 146
28253 TACGTGACAT
** * * * *
28263 TGATGCTTTGGTTTTGTAAGAAAAACTTTTCTTTTCTCTATTTTTCTTCGAATCAAAGTTCATCC
1 TGATGCTTTGGTTTCATAAGAAAAACTTTTCTTCTCTCCATTTTGCTTAGAATCAAAGTTCATCC
* * * * * * * *
28328 TTCAAATAAGACAAACTTGGATTCTGATAATAATCTCCATCCTTTTCATGACTGGGCACCATAAA
66 CTCAAATAAAACAAACATAGATTCTGATAAGAATCTCCATCCTTTTCATGACTAGGCAACAAAAA
* *
28393 CATATTCTCCTTATTA
131 AACATTCTCCTTATTA
** **
28409 TGATGCTTTGGTTTCATAAGAAAAGTTTTTC-TCTCTACCATTTTGCTTAGAATTGAAGTTCATC
1 TGATGCTTTGGTTTCATAAGAAAAACTTTTCTTCTCT-CCATTTTGCTTAGAATCAAAGTTCATC
* *
28473 CCTCAAATAAAACAAACATAGATTCTCGA-AAGAATCTCCAT-TTTGTTCATGATTAGGCAACAA
65 CCTCAAATAAAACAAACATAGATTCT-GATAAGAATCTCCATCCTT-TTCATGACTAGGCAACAA
28536 AAAAACATTCTCCTTATTA
128 AAAAACATTCTCCTTATTA
28555 -GATGC
1 TGATGC
28560 ATGATATTGA
Statistics
Matches: 126, Mismatches: 22, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
145 11 0.09
146 113 0.90
147 2 0.02
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.38
Consensus pattern (146 bp):
TGATGCTTTGGTTTCATAAGAAAAACTTTTCTTCTCTCCATTTTGCTTAGAATCAAAGTTCATCC
CTCAAATAAAACAAACATAGATTCTGATAAGAATCTCCATCCTTTTCATGACTAGGCAACAAAAA
AACATTCTCCTTATTA
Found at i:29470 original size:158 final size:160
Alignment explanation
Indices: 29294--29603 Score: 336
Period size: 159 Copynumber: 1.9 Consensus size: 160
29284 GATTTTGGTA
* * * * * * **
29294 GTAATCTCGATTCTTTTTTGTGATTGGGGAACATAATCACATTCTATTGATTAGGATACATGATA
1 GTAATCTCGATTCTTTTTTGAGATTAGGGAACAAAAACACATTCTACTCATTAGGATACACAATA
** * * * *
29359 TTAATGCTTTGGCTTCACAATAAAAGC-TTTCTTTCCACTATTTTCATTAGAATTAAAGTTCATC
66 TTAATGCTTAAGCTTCACAAGAAAAGCTTTTCTTTCCACCATTTTCATCAGAATCAAAGTTCATC
29423 CTTAAAATGAGACAAACATGGACTGTCATT
131 CTTAAAATGAGACAAACATGGACTGTCATT
** * ** * *
29453 GTAATCTTTATTC-TTTTTGAGATTAGGTAACAAAAACATGTTCTCCTCTTTAGGATACACAATA
1 GTAATCTCGATTCTTTTTTGAGATTAGGGAACAAAAACACATTCTACTCATTAGGATACACAATA
* ** * **
29517 TTGATGCTTAAGCTTTGCAAGAAAAGCTTTTCTTTCCACCATTTTCATCAGAGTCAAAGTTTGTC
66 TTAATGCTTAAGCTTCACAAGAAAAGCTTTTCTTTCCACCATTTTCATCAGAATCAAAGTTCATC
* * *
29582 TTTCAAATGAGATAAACATGGA
131 CTTAAAATGAGACAAACATGGA
29604 TTCTAGAAAT
Statistics
Matches: 120, Mismatches: 30, Indels: 2
0.79 0.20 0.01
Matches are distributed among these distances:
158 59 0.49
159 61 0.51
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.38
Consensus pattern (160 bp):
GTAATCTCGATTCTTTTTTGAGATTAGGGAACAAAAACACATTCTACTCATTAGGATACACAATA
TTAATGCTTAAGCTTCACAAGAAAAGCTTTTCTTTCCACCATTTTCATCAGAATCAAAGTTCATC
CTTAAAATGAGACAAACATGGACTGTCATT
Found at i:33797 original size:76 final size:76
Alignment explanation
Indices: 33689--33873 Score: 234
Period size: 76 Copynumber: 2.4 Consensus size: 76
33679 TATATCAAAA
*
33689 TTTTATTCAC-AGGGATACTCCAACCCCACTCTTC-AAAATTGATCTAGATTTAAACTCCT-TCT
1 TTTTATTCACGA-GGATACTCCAACCCCACTCTTCAAAAATT-ATCAAGATTTAAACTCCTCT-T
33751 TTGTCAAAATTATT
63 TTGTCAAAATTATT
* * **
33765 TTTTATTCACGAGGATACTCCAACCCCGCTCTTCAAAAATTTTCAAGATTTGGACTCCTCTTTTG
1 TTTTATTCACGAGGATACTCCAACCCCACTCTTCAAAAATTATCAAGATTTAAACTCCTCTTTTG
33830 TCAAAATTATT
66 TCAAAATTATT
* * * *
33841 TGTTATCCATGAGGATACTCCAACTCCA-TCTTC
1 TTTTATTCACGAGGATACTCCAACCCCACTCTTC
33874 TGAGTGGATA
Statistics
Matches: 96, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
75 5 0.05
76 83 0.86
77 8 0.08
ACGTcount: A:0.28, C:0.25, G:0.10, T:0.37
Consensus pattern (76 bp):
TTTTATTCACGAGGATACTCCAACCCCACTCTTCAAAAATTATCAAGATTTAAACTCCTCTTTTG
TCAAAATTATT
Found at i:37929 original size:52 final size:52
Alignment explanation
Indices: 37851--37981 Score: 208
Period size: 52 Copynumber: 2.5 Consensus size: 52
37841 CCCGAAATAT
* * *
37851 GAAAAGTTGCCTGCAGGTATCGATACATTTAATAGTGTATCGATACATCTGG
1 GAAAATTTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGG
* *
37903 GAAAATTTGCCTGCATGTCTCGATACATTTTATAATGTATCGATACATCTGG
1 GAAAATTTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGG
*
37955 GCAAATTTGCCTGCATGTATCGATACA
1 GAAAATTTGCCTGCATGTATCGATACA
37982 AAGATCAGTG
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 72 1.00
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.33
Consensus pattern (52 bp):
GAAAATTTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGG
Found at i:37994 original size:52 final size:51
Alignment explanation
Indices: 37851--38001 Score: 196
Period size: 52 Copynumber: 2.9 Consensus size: 51
37841 CCCGAAATAT
* *
37851 GAAAAGTTGCCTGCAGGTATCGATACATTTAATAGTGTATCGATACATCTGG
1 GAAAATTTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGG
* * *
37903 GAAAATTTGCCTGCATGTCTCGATACATTTTATAATGTATCGATACATCTGG
1 GAAAATTTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGG
* *
37955 GCAAATTTGCCTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 GAAAATTTGCCTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
38002 ATGTATCGAT
Statistics
Matches: 87, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
51 2 0.02
52 85 0.98
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (51 bp):
GAAAATTTGCCTGCATGTATCGATACATTAATAGTGTATCGATACATCTGG
Found at i:38008 original size:13 final size:13
Alignment explanation
Indices: 37990--38014 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37980 CAAAGATCAG
37990 TGTATCGATACAA
1 TGTATCGATACAA
38003 TGTATCGATACA
1 TGTATCGATACA
38015 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:38095 original size:13 final size:13
Alignment explanation
Indices: 38077--38101 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
38067 CAAAAAAATA
38077 TGTATCGATACAT
1 TGTATCGATACAT
38090 TGTATCGATACA
1 TGTATCGATACA
38102 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:38112 original size:33 final size:33
Alignment explanation
Indices: 38055--38121 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
38045 AGTAGCTTAA
*
38055 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCAATAC
* ***
38088 ATTGTATCGATACAACACTTTATGTATCAATAC
1 ATTGTATCGATACAAAAAAATATGTATCAATAC
38121 A
1 A
38122 AATCGTTGAA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.42, C:0.15, G:0.10, T:0.33
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCAATAC
Found at i:39044 original size:52 final size:49
Alignment explanation
Indices: 38967--39260 Score: 306
Period size: 52 Copynumber: 6.1 Consensus size: 49
38957 CTTAGGAATG
** *
38967 TTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGAC
1 TTAAAGATGAAGACGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
39016 TTAAAGATGACAAAGACGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
1 TTAAAGATG---AAGACGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* *
39068 TTAAAGATGACAAAGGCGCCAATATGCTGATTCAAGGCCAGCAATATTGGAC
1 TTAAAGATG---AAGACGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* * * * *
39120 TT-AA-A-G--G-TGCCAATGTGCTGATTCAAGGCCAGTGACATTAGAC
1 TTAAAGATGAAGACGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
*
39163 TTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
1 TTAAAGATGAAGACGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
** * * *
39212 TT---G--G-AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGAC
1 TTAAAGATGAAGACGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
39255 TTAAAG
1 TTAAAG
39261 GAAGATGCCA
Statistics
Matches: 214, Mismatches: 19, Indels: 27
0.82 0.07 0.10
Matches are distributed among these distances:
43 69 0.32
44 4 0.02
45 1 0.00
46 3 0.01
48 1 0.00
49 44 0.21
50 1 0.00
51 2 0.01
52 89 0.42
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.24
Consensus pattern (49 bp):
TTAAAGATGAAGACGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
Found at i:39140 original size:43 final size:43
Alignment explanation
Indices: 39079--39261 Score: 213
Period size: 43 Copynumber: 4.1 Consensus size: 43
39069 TAAAGATGAC
* * *
39079 AAAGGCGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTT
* * *
39122 AAAGGTGCCAATGTGCTGATTCAAGGCCAGTGACATTAGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTT
*
39165 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 -AA-A-G--G-TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTT
** * *
39214 GGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTT
39257 AAAGG
1 AAAGG
39262 AAGATGCCAC
Statistics
Matches: 117, Mismatches: 17, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
43 75 0.64
44 3 0.03
45 1 0.01
46 2 0.02
47 1 0.01
48 1 0.01
49 34 0.29
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (43 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTT
Found at i:39213 original size:92 final size:92
Alignment explanation
Indices: 39033--39270 Score: 338
Period size: 92 Copynumber: 2.6 Consensus size: 92
39023 TGACAAAGAC
* * * **
39033 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGCGCCAATATGCTGA
1 GCCAATGTGCTGATTCAAGGCCAGTGACATTGGACTTAAAGATG---AAGATGCCAATATGCTGA
39098 TTCAAGGCCAGCAATATTGGACTTAAAGGT
63 TTCAAGGCCAGCAATATTGGACTTAAAGGT
*
39128 GCCAATGTGCTGATTCAAGGCCAGTGACATTAGACTTAAAGATGAAGATGCCAATATGCTGATTC
1 GCCAATGTGCTGATTCAAGGCCAGTGACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTC
* **
39193 AAGGCCAGCGATATTGGACTTGGAGGT
66 AAGGCCAGCAATATTGGACTTAAAGGT
39220 GCCAATGTGCTGATTCAAGGCCAGCT-ACATTGGACTTAAAG--GAAGATGCCA
1 GCCAATGTGCTGATTCAAGGCCAG-TGACATTGGACTTAAAGATGAAGATGCCA
39271 CCAACTTGTG
Statistics
Matches: 132, Mismatches: 10, Indels: 7
0.89 0.07 0.05
Matches are distributed among these distances:
90 10 0.08
92 81 0.61
93 1 0.01
95 40 0.30
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.24
Consensus pattern (92 bp):
GCCAATGTGCTGATTCAAGGCCAGTGACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTC
AAGGCCAGCAATATTGGACTTAAAGGT
Found at i:39377 original size:32 final size:32
Alignment explanation
Indices: 39266--39419 Score: 202
Period size: 32 Copynumber: 4.7 Consensus size: 32
39256 TAAAGGAAGA
* * *
39266 TGCCACCAACTTGTGTGGGCTTTTGAAGAAGGT
1 TGCCACCGACTTGTGTGGGCTTTAG-AGAGGGT
*
39299 TGCCACCGACTTGTGTGGGCTTTAGAAAGGGGAT
1 TGCCACCGACTTGTGTGGGCTTTAGAGA-GGG-T
*
39333 TGCCACCAACTTGTGTGGGCTTTAGAGAGGGT
1 TGCCACCGACTTGTGTGGGCTTTAGAGAGGGT
*
39365 TGCCATCGACTTGTGTGGGCTTT-GAGAAGGGT
1 TGCCACCGACTTGTGTGGGCTTTAGAG-AGGGT
*
39397 TGCCACAGACTTGTGTGGGCTTT
1 TGCCACCGACTTGTGTGGGCTTT
39420 GGGAAGGAGA
Statistics
Matches: 108, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
31 3 0.03
32 50 0.46
33 28 0.26
34 27 0.25
ACGTcount: A:0.18, C:0.18, G:0.34, T:0.30
Consensus pattern (32 bp):
TGCCACCGACTTGTGTGGGCTTTAGAGAGGGT
Found at i:39395 original size:66 final size:65
Alignment explanation
Indices: 39266--39419 Score: 224
Period size: 66 Copynumber: 2.4 Consensus size: 65
39256 TAAAGGAAGA
*
39266 TGCCACCAACTTGTGTGGGCTTTTGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTAGAAAGGGG
1 TGCCACCAACTTGTGTGGGCTTTAGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTAGAAA-GGG
39331 AT
65 -T
* *
39333 TGCCACCAACTTGTGTGGGCTTTAG-AGAGGGTTGCCATCGACTTGTGTGGGCTTT-GAGAAGGG
1 TGCCACCAACTTGTGTGGGCTTTAGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTAGA-AAGGG
39396 T
65 T
39397 TGCCA-CAGACTTGTGTGGGCTTT
1 TGCCACCA-ACTTGTGTGGGCTTT
39420 GGGAAGGAGA
Statistics
Matches: 82, Mismatches: 3, Indels: 7
0.89 0.03 0.08
Matches are distributed among these distances:
63 2 0.02
64 21 0.26
65 5 0.06
66 30 0.37
67 24 0.29
ACGTcount: A:0.18, C:0.18, G:0.34, T:0.30
Consensus pattern (65 bp):
TGCCACCAACTTGTGTGGGCTTTAGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTAGAAAGGGT
Found at i:39472 original size:31 final size:31
Alignment explanation
Indices: 39434--40103 Score: 566
Period size: 31 Copynumber: 20.7 Consensus size: 31
39424 AGGAGAAAGA
*
39434 TGCCACGGAGTTTTGGACTTTGAAAAGAAGG
1 TGCCACGGAGTTGTGGACTTTGAAAAGAAGG
*
39465 TGCCACGGAGTTGTGGACTTTGAAAAAAAGG
1 TGCCACGGAGTTGTGGACTTTGAAAAGAAGG
* *
39496 TGCCATGGAGTCGTGGAC-TT-AAAAG--GG
1 TGCCACGGAGTTGTGGACTTTGAAAAGAAGG
* *
39523 TACCACGGAATTGTGGACTTTGAAAAGAAGG
1 TGCCACGGAGTTGTGGACTTTGAAAAGAAGG
*
39554 TGCCATGGAGTTGTGGACTTTGAAAAGAAGG
1 TGCCACGGAGTTGTGGACTTTGAAAAGAAGG
* * ** *
39585 TGGCACGGAGTCGTGGACTTAAAAGGAACAAGG
1 TGCCACGGAGTTGTGGACTTTGAA--AAGAAGG
*
39618 TGCCACCGAGTTGTGGACTTTGAAAAGAAGG
1 TGCCACGGAGTTGTGGACTTTGAAAAGAAGG
39649 TGCCACGGAGTTGTGGACTTTGAAAAGAAGG
1 TGCCACGGAGTTGTGGACTTTGAAAAGAAGG
*
39680 TGCCACGGAGTCGTGGACTTTGAAAAGAAGG
1 TGCCACGGAGTTGTGGACTTTGAAAAGAAGG
* ** *
39711 TGCCACGGAGTCGTGGACTTAAAAGGAACAAGG
1 TGCCACGGAGTTGTGGACTTTGAA--AAGAAGG
* * *
39744 TGCCACCGAGTTGTGGGC-TT-AAATG--GG
1 TGCCACGGAGTTGTGGACTTTGAAAAGAAGG
* * *
39771 TGCCACAGAGTTGTGGACTTAGAAGGAAAAAGAG
1 TGCCACGGAGTTGTGGACTTTGAA--AAGAAG-G
* * *
39805 TGCCACGGAGTTGTGGGCTTTAAAAAGGACAAAGA
1 TGCCACGGAGTTGTGGACTTTGAAAA-G---AAGG
*
39840 TGCCACAGAGTTGTGGACTTTGAAAAGAAGGAAAAAAG
1 TGCCACGGAGTTGTGGACTTTGAAAAGAA-G------G
* *
39878 ATGCCACAGAGTTGTGGGCTTTGAAAAGAAGG
1 -TGCCACGGAGTTGTGGACTTTGAAAAGAAGG
*
39910 TGCCACGGAATTGTGGACTTTGAAAAGAAGGAAAAAAG
1 TGCCACGGAGTTGTGGACTTTGAAAAGAA-G------G
** *
39948 ATGCCATAGAGTTGTGGGCTTTGAAAAGAAGGAAAAAAG
1 -TGCCACGGAGTTGTGGACTTTGAAAAGAA-G------G
** *
39987 ATGCCATAGAGTTGTGGGCTTTGAAAAGAAGG
1 -TGCCACGGAGTTGTGGACTTTGAAAAGAAGG
*
40019 TGCCACGGAATTGTGGACTTTGAAAAGAAGG
1 TGCCACGGAGTTGTGGACTTTGAAAAGAAGG
* **
40050 TGCCACGGAGTTGTGGGCTTTGAAGAA-AAAA
1 TGCCACGGAGTTGTGGACTTTGAA-AAGAAGG
* *
40081 TGCCACTGAGTCGTGGACTTTGA
1 TGCCACGGAGTTGTGGACTTTGA
40104 GACAAAATGC
Statistics
Matches: 534, Mismatches: 69, Indels: 72
0.79 0.10 0.11
Matches are distributed among these distances:
27 34 0.06
28 3 0.01
29 12 0.02
30 2 0.00
31 284 0.53
32 9 0.02
33 47 0.09
34 22 0.04
35 23 0.04
36 3 0.01
38 3 0.01
39 92 0.17
ACGTcount: A:0.32, C:0.13, G:0.33, T:0.21
Consensus pattern (31 bp):
TGCCACGGAGTTGTGGACTTTGAAAAGAAGG
Found at i:39668 original size:95 final size:93
Alignment explanation
Indices: 39429--40100 Score: 510
Period size: 109 Copynumber: 6.9 Consensus size: 93
39419 TGGGAAGGAG
* * *
39429 AAAGATGCCACGGAGTTTTGGACTTTGAAAAGAAGGTGCCACGGAGTTGTGGACTTTGAAAAAAA
1 AAAGGTGCCACGGAGTTGTGGACTTTGAAAAGAAGGTGCCACGGAGTTGTGGACTTTGAAAAGAA
*
39494 GGTGCCATGGAGTCGTGGACTTAAAAG-
66 GGTGCCACGGAGTCGTGGACTTAAAAGA
* * *
39521 ---GGTACCACGGAATTGTGGACTTTGAAAAGAAGGTGCCATGGAGTTGTGGACTTTGAAAAGAA
1 AAAGGTGCCACGGAGTTGTGGACTTTGAAAAGAAGGTGCCACGGAGTTGTGGACTTTGAAAAGAA
*
39583 GGTGGCACGGAGTCGTGGACTTAAAAGGA
66 GGTGCCACGGAGTCGTGGACTTAAAA-GA
*
39612 ACAAGGTGCCACCGAGTTGTGGACTTTGAAAAGAAGGTGCCACGGAGTTGTGGACTTTGAAAAGA
1 A-AAGGTGCCACGGAGTTGTGGACTTTGAAAAGAAGGTGCCACGGAGTTGTGGACTTTGAAAAGA
39677 AGGTGCCACGGAGTCGTGGACTTTGAAAAG-
65 AGGTGCCACGGAGTCGTGGAC-TT-AAAAGA
* ** * * * *
39707 -AAGGTGCCACGGAGTCGTGGACTTAAAAGGAACAAGGTGCCACCGAGTTGTGGGC-TT-AAATG
1 AAAGGTGCCACGGAGTTGTGGACTTTGAA--AAGAAGGTGCCACGGAGTTGTGGACTTTGAAAAG
* * *
39769 --GGTGCCACAGAGTTGTGGACTTAGAAGGAA
64 AAGGTGCCACGGAGTCGTGGACTTA-AAAG-A
* * * *
39799 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGGACAAAGATGCCACAGAGTTGTGGACTTTGAA
1 AAAG-GTGCCACGGAGTTGTGGACTTTGAAAA-G---AAGGTGCCACGGAGTTGTGGACTTTGAA
* * *
39864 AAGAAGGAAAAAAGATGCCACAGAGTTGTGGGCTTTGAAAAG-
61 AAGAA-G------G-TGCCACGGAGTCGTGGAC-TT-AAAAGA
* ** *
39906 -AAGGTGCCACGGAATTGTGGACTTTGAAAAGAAGGAAAAAAGATGCCATAGAGTTGTGGGCTTT
1 AAAGGTGCCACGGAGTTGTGGACTTTGAAAAGAA-G------G-TGCCACGGAGTTGTGGACTTT
** * *
39970 GAAAAGAAGGAAAAAAGATGCCATAGAGTTGTGGGCTTTGAAAAG-
58 GAAAAGAA-G------G-TGCCACGGAGTCGTGGAC-TT-AAAAGA
* *
40015 -AAGGTGCCACGGAATTGTGGACTTTGAAAAGAAGGTGCCACGGAGTTGTGGGCTTTGAAGAA-A
1 AAAGGTGCCACGGAGTTGTGGACTTTGAAAAGAAGGTGCCACGGAGTTGTGGACTTTGAA-AAGA
** *
40078 AAATGCCACTGAGTCGTGGACTT
65 AGGTGCCACGGAGTCGTGGACTT
40101 TGAGACAAAA
Statistics
Matches: 489, Mismatches: 49, Indels: 84
0.79 0.08 0.14
Matches are distributed among these distances:
89 81 0.17
90 6 0.01
91 18 0.04
92 4 0.01
93 45 0.09
94 24 0.05
95 99 0.20
96 22 0.04
97 6 0.01
98 4 0.01
101 27 0.06
102 4 0.01
104 1 0.00
105 24 0.05
106 3 0.01
107 1 0.00
108 18 0.04
109 101 0.21
110 1 0.00
ACGTcount: A:0.33, C:0.13, G:0.33, T:0.21
Consensus pattern (93 bp):
AAAGGTGCCACGGAGTTGTGGACTTTGAAAAGAAGGTGCCACGGAGTTGTGGACTTTGAAAAGAA
GGTGCCACGGAGTCGTGGACTTAAAAGA
Found at i:39690 original size:126 final size:123
Alignment explanation
Indices: 39434--39940 Score: 565
Period size: 126 Copynumber: 4.0 Consensus size: 123
39424 AGGAGAAAGA
* * *
39434 TGCCACGGAGTTTTGGACTTTGAAAAGAAGGTGCCACGGAGTTGTGGACTTTGAAA--AA-AAGG
1 TGCCACGGAGTTGTGGACTTTGAAAAGAAGGTGCCACGGAGTCGTGGACTTTAAAAGGAACAAGG
** * *
39496 TGCCATGGAGTCGTGGACTTAAAAGGGTACCACGGAATTGTGGACTTTGAAAAGAAGG
66 TGCCACCGAGTTGTGGACTTAAAAGGGTGCCACGGAATTGTGGACTTTGAAAAGAAGG
* *
39554 TGCCATGGAGTTGTGGACTTTGAAAAGAAGGTGGCACGGAGTCGTGGAC-TTAAAAGGAACAAGG
1 TGCCACGGAGTTGTGGACTTTGAAAAGAAGGTGCCACGGAGTCGTGGACTTTAAAAGGAACAAGG
*
39618 TGCCACCGAGTTGTGGACTTTGAAAAGAAGGTGCCACGGAGTTGTGGACTTTGAAAAGAAGG
66 TGCCACCGAGTTGTGGAC-TT-AAAAG--GGTGCCACGGAATTGTGGACTTTGAAAAGAAGG
*
39680 TGCCACGGAGTCGTGGACTTTGAAAAGAAGGTGCCACGGAGTCGTGGAC-TTAAAAGGAACAAGG
1 TGCCACGGAGTTGTGGACTTTGAAAAGAAGGTGCCACGGAGTCGTGGACTTTAAAAGGAACAAGG
* * * * * *
39744 TGCCACCGAGTTGTGGGCTTAAATGGGTGCCACAGAGTTGTGGACTTAGAAGGAAAAAGAG
66 TGCCACCGAGTTGTGGACTTAAAAGGGTGCCACGGAATTGTGGACTTTGAA--AAGAAG-G
* * * * *
39805 TGCCACGGAGTTGTGGGCTTTAAAAAGGACAAAGATGCCACAGAGTTGTGGACTTTGAAAAGAAG
1 TGCCACGGAGTTGTGGACTTTGAAAA-G---AAGGTGCCACGGAGTCGTGGACTTT---AA-AAG
* * * *
39870 GAAAAAAGATGCCACAGAGTTGTGGGCTTTGAAAAGAAGGTGCCACGGAATTGTGGACTTTGAAA
58 G-AACAAGGTGCCACCGAGTTGTGGAC-TT-AAAAG--GGTGCCACGGAATTGTGGACTTTGAAA
39935 AGAAGG
118 AGAAGG
39941 AAAAAAGATG
Statistics
Matches: 331, Mismatches: 32, Indels: 32
0.84 0.08 0.08
Matches are distributed among these distances:
119 5 0.02
120 45 0.14
121 2 0.01
122 43 0.13
123 2 0.01
124 14 0.04
125 26 0.08
126 110 0.33
129 19 0.06
130 2 0.01
133 2 0.01
134 4 0.01
135 22 0.07
136 3 0.01
137 9 0.03
139 23 0.07
ACGTcount: A:0.32, C:0.14, G:0.33, T:0.21
Consensus pattern (123 bp):
TGCCACGGAGTTGTGGACTTTGAAAAGAAGGTGCCACGGAGTCGTGGACTTTAAAAGGAACAAGG
TGCCACCGAGTTGTGGACTTAAAAGGGTGCCACGGAATTGTGGACTTTGAAAAGAAGG
Found at i:39887 original size:39 final size:38
Alignment explanation
Indices: 39791--40018 Score: 278
Period size: 39 Copynumber: 6.2 Consensus size: 38
39781 TTGTGGACTT
*
39791 AGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT--AA
1 AGAAGGAAAAAGA-TGCCACAGAGTTGTGGGCTTTGAAA
* *
39828 A-AAGGACAAAGATGCCACAGAGTTGTGGACTTTGAAA
1 AGAAGGAAAAAGATGCCACAGAGTTGTGGGCTTTGAAA
39865 AGAAGGAAAAAAGATGCCACAGAGTTGTGGGCTTTGAAA
1 AGAAGG-AAAAAGATGCCACAGAGTTGTGGGCTTTGAAA
* * *
39904 AGAA-G-----G-TGCCACGGAATTGTGGACTTTGAAA
1 AGAAGGAAAAAGATGCCACAGAGTTGTGGGCTTTGAAA
*
39935 AGAAGGAAAAAAGATGCCATAGAGTTGTGGGCTTTGAAA
1 AGAAGG-AAAAAGATGCCACAGAGTTGTGGGCTTTGAAA
*
39974 AGAAGGAAAAAAGATGCCATAGAGTTGTGGGCTTTGAAA
1 AGAAGG-AAAAAGATGCCACAGAGTTGTGGGCTTTGAAA
40013 AGAAGG
1 AGAAGG
40019 TGCCACGGAA
Statistics
Matches: 167, Mismatches: 12, Indels: 22
0.83 0.06 0.11
Matches are distributed among these distances:
31 26 0.16
32 2 0.01
35 19 0.11
36 10 0.06
37 4 0.02
38 6 0.04
39 100 0.60
ACGTcount: A:0.39, C:0.10, G:0.32, T:0.19
Consensus pattern (38 bp):
AGAAGGAAAAAGATGCCACAGAGTTGTGGGCTTTGAAA
Found at i:40113 original size:30 final size:30
Alignment explanation
Indices: 40031--40139 Score: 121
Period size: 31 Copynumber: 3.5 Consensus size: 30
40021 CCACGGAATT
* * *
40031 GTGGACTTTGA-AAAGAAGGTGCCACGGAGTT
1 GTGGACTTTGAGAAA-AA-ATGCCACTGAGTC
*
40062 GTGGGCTTTGAAGAAAAAATGCCACTGAGTC
1 GTGGACTTTG-AGAAAAAATGCCACTGAGTC
*
40093 GTGGACTTTGAGACAAAATGCCACTGAGTC
1 GTGGACTTTGAGAAAAAATGCCACTGAGTC
*
40123 ATGGACTTTGAAGAAAA
1 GTGGACTTTG-AGAAAA
40140 GGTATTTGAA
Statistics
Matches: 67, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
30 28 0.42
31 33 0.49
32 3 0.04
33 3 0.04
ACGTcount: A:0.33, C:0.15, G:0.29, T:0.23
Consensus pattern (30 bp):
GTGGACTTTGAGAAAAAATGCCACTGAGTC
Found at i:41106 original size:16 final size:15
Alignment explanation
Indices: 41085--41143 Score: 57
Period size: 17 Copynumber: 3.7 Consensus size: 15
41075 GGTTTTTCCC
41085 TTTTTTTTTG-TTTG
1 TTTTTTTTTGTTTTG
*
41099 TGTTTTTTTTGTTTTTT
1 T-TTTTTTTTG-TTTTG
41116 TTTTCTTTCTTGTTTTG
1 TTTT-TTT-TTGTTTTG
41133 TTTCTTTTTTG
1 TTT-TTTTTTG
41144 GAAAAGAACA
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
14 1 0.03
15 9 0.24
16 6 0.16
17 17 0.46
18 4 0.11
ACGTcount: A:0.00, C:0.05, G:0.12, T:0.83
Consensus pattern (15 bp):
TTTTTTTTTGTTTTG
Found at i:41114 original size:26 final size:27
Alignment explanation
Indices: 41085--41142 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
41075 GGTTTTTCCC
* * *
41085 TTTTTTTTTGTTT-GTGTTTTTTTTGT
1 TTTTTTTTTCTTTCGTGTTTTGTTTCT
*
41111 TTTTTTTTTCTTTCTTGTTTTGTTTCT
1 TTTTTTTTTCTTTCGTGTTTTGTTTCT
41138 TTTTT
1 TTTTT
41143 GGAAAAGAAC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 12 0.44
27 15 0.56
ACGTcount: A:0.00, C:0.05, G:0.10, T:0.84
Consensus pattern (27 bp):
TTTTTTTTTCTTTCGTGTTTTGTTTCT
Found at i:48365 original size:13 final size:13
Alignment explanation
Indices: 48347--48371 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
48337 CAAAGATCAG
48347 TGTATCGATACAA
1 TGTATCGATACAA
48360 TGTATCGATACA
1 TGTATCGATACA
48372 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:48384 original size:21 final size:21
Alignment explanation
Indices: 48358--48402 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
48348 GTATCGATAC
48358 AATGTATCGATACATTTGAGT
1 AATGTATCGATACATTTGAGT
48379 AATGTATCGATACATTTGAGT
1 AATGTATCGATACATTTGAGT
48400 AAT
1 AAT
48403 ATTCGTCCCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.38
Consensus pattern (21 bp):
AATGTATCGATACATTTGAGT
Found at i:51850 original size:13 final size:13
Alignment explanation
Indices: 51832--51857 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
51822 TACAGCAAGT
51832 ATGTATCGATACA
1 ATGTATCGATACA
51845 ATGTATCGATACA
1 ATGTATCGATACA
51858 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:54091 original size:21 final size:21
Alignment explanation
Indices: 54058--54102 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
54048 TTGCAAGTTG
*
54058 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
54080 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
54100 AAA
1 AAA
54103 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:55926 original size:15 final size:15
Alignment explanation
Indices: 55906--55936 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
55896 TAAAAATGTC
*
55906 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
55921 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
55936 C
1 C
55937 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:62462 original size:17 final size:18
Alignment explanation
Indices: 62440--62489 Score: 59
Period size: 17 Copynumber: 2.8 Consensus size: 18
62430 ATAAAGCACT
62440 AAGAAAAA-AACAAAAAA
1 AAGAAAAAGAACAAAAAA
* *
62457 ATGAAAAATAA-AAAAAA
1 AAGAAAAAGAACAAAAAA
62474 AAGAGAAAAGAACAAA
1 AAGA-AAAAGAACAAA
62490 GGTAAGATCA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 16 0.59
18 8 0.30
19 3 0.11
ACGTcount: A:0.82, C:0.04, G:0.10, T:0.04
Consensus pattern (18 bp):
AAGAAAAAGAACAAAAAA
Found at i:64766 original size:103 final size:103
Alignment explanation
Indices: 64606--64819 Score: 288
Period size: 103 Copynumber: 2.1 Consensus size: 103
64596 TATCAAAATT
* * * * *
64606 TTATTCACAGGGATACTCCAACCTCAACCTTTTAAGGGGATACTCCAACCTTGCTCTTCAAAATT
1 TTATCCACAGGGATAATCCAACCTCAACCTTTTAAGGGGATACTCCAACCCTACTCTTAAAAATT
* *
64671 TATCT-AGTTTTGAACTCTTCTTTTGTTAAAATTATTTG
66 TAT-TAAGATTTGAACTCTTCTTTTGTTAAAATTATATG
* ** * *
64709 TTATCCACAGGGATAATCTAACCTTGACTTTTTGAA-GGGATACTCTAACCCTACTCTTAAAAAT
1 TTATCCACAGGGATAATCCAACCTCAACCTTTT-AAGGGGATACTCCAACCCTACTCTTAAAAAT
64773 TTATTAAGATTTGAACTCTTCTTTTGTTAAAATTATATG
65 TTATTAAGATTTGAACTCTTCTTTTGTTAAAATTATATG
64812 TTATCCAC
1 TTATCCAC
64820 GAGGATACTG
Statistics
Matches: 97, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
102 1 0.01
103 94 0.97
104 2 0.02
ACGTcount: A:0.29, C:0.20, G:0.11, T:0.40
Consensus pattern (103 bp):
TTATCCACAGGGATAATCCAACCTCAACCTTTTAAGGGGATACTCCAACCCTACTCTTAAAAATT
TATTAAGATTTGAACTCTTCTTTTGTTAAAATTATATG
Found at i:66980 original size:68 final size:68
Alignment explanation
Indices: 66871--67029 Score: 291
Period size: 68 Copynumber: 2.3 Consensus size: 68
66861 GGCCTAAAAT
*
66871 CTATAAAGCCCTAACTAAACAAGAACTCTCTTATCCGATAAGGAAAAATCTATCCTAAACACAAG
1 CTATAGAGCCCTAACTAAACAAGAACTCTCTTATCCGATAAGGAAAAATCTATCCTAAACACAAG
66936 AAC
66 AAC
*
66939 CTATAGAGCCCTAACTAAATAAGAACTCTCTTATCCGATAAGGAAAAATCTATCCTAAACACAAG
1 CTATAGAGCCCTAACTAAACAAGAACTCTCTTATCCGATAAGGAAAAATCTATCCTAAACACAAG
67004 AAC
66 AAC
*
67007 CTATAGAGTCCTAACTAAACAAG
1 CTATAGAGCCCTAACTAAACAAG
67030 GACATAAAAT
Statistics
Matches: 87, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
68 87 1.00
ACGTcount: A:0.45, C:0.24, G:0.10, T:0.21
Consensus pattern (68 bp):
CTATAGAGCCCTAACTAAACAAGAACTCTCTTATCCGATAAGGAAAAATCTATCCTAAACACAAG
AAC
Found at i:74873 original size:155 final size:155
Alignment explanation
Indices: 74504--74915 Score: 413
Period size: 156 Copynumber: 2.6 Consensus size: 155
74494 GGTAACTCTA
* * * * * **
74504 AAAGACATAAAAAGGTTATAGCTAGGATGAACCTATCCTAAATACCCACCTTCGGTATAAAAGCA
1 AAAGACTTAAAAAGGTAAAAGATAGGATGAACCTATCCTAAATACCCACTTTCGACATAAAAGCA
* * *
74569 GACCTAGTGACAACGTAGGACTCGGTTCTAGAAAATTACGAAAATGCCTATATGGATGCACCTTC
66 AACC-AGTGACAACCTAGGACTTGGTTCTAGAAAATTACGAAAATGCCTATATGGATGCACCTTC
* * *
74634 AACATGAAAGTTTCCCGATAACCCTC
130 AACATAAAAGTTGCCCGAGAACCCTC
* * * ** *
74660 AAAGACTTAAAAAGGTTACAGCTAGGACAAACCTATCCTAAATACCCA-TCTTCAACATAAAAGC
1 AAAGACTTAAAAAGGTAAAAGATAGGATGAACCTATCCTAAATACCCACT-TTCGACATAAAAGC
* * * *
74724 AAACACGGTGACAACCTAGGACTTGGTT-TTGAAAAATTACGAAAATGCCTTTA-GGA-GATACC
65 AAAC-CAGTGACAACCTAGGACTTGGTTCTAG-AAAATTACGAAAATGCCTATATGGATG-CACC
* * * * *
74786 TTCAACGTAAAAG-TGCCTG-GCACCTTT
127 TTCAACATAAAAGTTGCCCGAGAACCCTC
*
74813 AAAGGACTTAAAAAGGTAAAATGATGGGATGAACCTATCCTAAATACCCACTTTCGACATAAAAG
1 AAA-GACTTAAAAAGGTAAAA-GATAGGATGAACCTATCCTAAATACCCACTTTCGACATAAAAG
* * * *
74878 CGGATCCAGTGACAACCTAGGACTTAGTTCTAAAAAAT
64 C-AAACCAGTGACAACCTAGGACTTGGTTCTAGAAAAT
74916 AAAAATGCCC
Statistics
Matches: 211, Mismatches: 36, Indels: 19
0.79 0.14 0.07
Matches are distributed among these distances:
153 7 0.03
154 20 0.09
155 82 0.39
156 101 0.48
157 1 0.00
ACGTcount: A:0.39, C:0.21, G:0.17, T:0.23
Consensus pattern (155 bp):
AAAGACTTAAAAAGGTAAAAGATAGGATGAACCTATCCTAAATACCCACTTTCGACATAAAAGCA
AACCAGTGACAACCTAGGACTTGGTTCTAGAAAATTACGAAAATGCCTATATGGATGCACCTTCA
ACATAAAAGTTGCCCGAGAACCCTC
Found at i:75071 original size:15 final size:16
Alignment explanation
Indices: 75051--75084 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
75041 ATAAGAAAAT
75051 AATATT-AAATCTCGG
1 AATATTAAAATCTCGG
75066 AATATTAGAAATCTCGG
1 AATATTA-AAATCTCGG
75083 AA
1 AA
75085 AACGAAGTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.35
17 11 0.65
ACGTcount: A:0.44, C:0.12, G:0.15, T:0.29
Consensus pattern (16 bp):
AATATTAAAATCTCGG
Found at i:76147 original size:19 final size:19
Alignment explanation
Indices: 76123--76167 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
76113 AATCCTACTA
*
76123 TTTTTTCTTGTTTTTTCTC
1 TTTTTTCTTCTTTTTTCTC
*
76142 TTTTTTTTTCTTTTTTCTC
1 TTTTTTCTTCTTTTTTCTC
76161 TCTTTTT
1 T-TTTTT
76168 TTGGATACGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 18 0.78
20 5 0.22
ACGTcount: A:0.00, C:0.16, G:0.02, T:0.82
Consensus pattern (19 bp):
TTTTTTCTTCTTTTTTCTC
Found at i:76149 original size:21 final size:21
Alignment explanation
Indices: 76123--76169 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
76113 AATCCTACTA
*
76123 TTTTTTCTTGTTTTTTCTCTTT
1 TTTTTTCTT-TTTTCTCTCTTT
76145 TTTTTTCTTTTTTCTCTCTTT
1 TTTTTTCTTTTTTCTCTCTTT
76166 TTTT
1 TTTT
76170 GGATACGTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 15 0.62
22 9 0.38
ACGTcount: A:0.00, C:0.15, G:0.02, T:0.83
Consensus pattern (21 bp):
TTTTTTCTTTTTTCTCTCTTT
Found at i:76168 original size:19 final size:19
Alignment explanation
Indices: 76133--76169 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
76123 TTTTTTCTTG
*
76133 TTTTTTCTCTTTTTTTTTC
1 TTTTTTCTCTCTTTTTTTC
76152 TTTTTTCTCTCTTTTTTT
1 TTTTTTCTCTCTTTTTTT
76170 GGATACGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (19 bp):
TTTTTTCTCTCTTTTTTTC
Found at i:77055 original size:163 final size:162
Alignment explanation
Indices: 76661--77444 Score: 727
Period size: 167 Copynumber: 4.8 Consensus size: 162
76651 AAAACTTATG
* * * *
76661 AAAATAAATTAATTTTT--AAACTAATTTAATATAAATTAAATGATGATATTTGATGAATTTTAA
1 AAAATGAATGAATTTTTGAAAACTAATTTAATATAAATTAAATAATAATATTTGATGAATTTTAA
* * * * * * * *
76724 AAATTAAAAAATAAGAAAAATCC-CTTCGAAAACATTTATGGAGAAGAAAACTTCGTATTTCAGA
66 AAATTAGAAACTAAGAAAAATCCTC-TCGAAAAAAATTATGGAGTAGAAAACTCCGTATTTTAAA
* * * *
76788 AATATGGGAATTTC---AAGAA--AAAAAT--GA
130 AATA-GAGAGTTTCAAAAAAAATGAAAAATCATA
* ** * * *
76815 AAAATGAATGAATTTTTGAGAACTGGTTTAATATGAACTAAATCATAATATTTGATGAATTTTAA
1 AAAATGAATGAATTTTTGAAAACTAATTTAATATAAATTAAATAATAATATTTGATGAATTTTAA
* * *
76880 AAATTAGAAACTAAGAAAAATCCTCTCGAAAACATTTAT-GAGGTAGAAAACTCCGTATTTCAAA
66 AAATTAGAAACTAAGAAAAATCCTCTCGAAAAAAATTATGGA-GTAGAAAACTCCGTATTTTAAA
76944 AATAGCAGAGTTTCAAAAAAAATGAAAAATCATA
130 AATAG-AGAGTTTCAAAAAAAATGAAAAATCATA
** * * * *
76978 AAAATGGCTGAATTTTTTAAAAATAATTTAATATGAATTAAATAATAATATTTTATGAATTTTAA
1 AAAATGAATGAATTTTTGAAAACTAATTTAATATAAATTAAATAATAATATTTGATGAATTTTAA
* * * *
77043 AAATTAGAAACTAAGAAAAATCCT-TCCGAAAATAATTACGGAGTAGAAAACTCAGTATTTTGAA
66 AAATTAGAAACTAAGAAAAATCCTCT-CGAAAAAAATTATGGAGTAGAAAACTCCGTATTTTAAA
* *
77107 AATAGGTGAGTTTCAAGAAAAAAAATAAAAAACTCATA
130 AATA-GAGAGTTTC---AAAAAAAATGAAAAA-TCATA
* * * *
77145 AAAATGAATGAATTTTTGAAAACTAATTTAATATAAATTAAAGAATAATATTTTATAAATTTAAA
1 AAAATGAATGAATTTTTGAAAACTAATTTAATATAAATTAAATAATAATATTTGATGAATTTTAA
* * * * * *
77210 AAATTA-AAACCATGAAAAATCCCCTCGAAAAAAAATTACGGAGTAGAAAATTTCGTATTTTAAA
66 AAATTAGAAACTAAGAAAAATCCTCTCG-AAAAAAATTATGGAGTAGAAAACTCCGTATTTTAAA
* * * * *
77274 AATAAGAGATTTTTAAGGAAAAAATTGAAATATTTATG
130 AAT-AGAGAGTTTCAA--AAAAAA-TGAAA-AATCATA
* * * * *
77312 AAAATAAATGAATTTTTGAAAAATGATTTAACATAAATTAAATAATAATATTTGATGAAATTTAA
1 AAAATGAATGAATTTTTGAAAACTAATTTAATATAAATTAAATAATAATATTTGATGAATTTTAA
* * * * * *
77377 AAATTTTG-GATTAATG-AAAATCCTC-CCAAAAAAATTATGAAGTAGAAAACTCCGTATTTTGA
66 AAA-TTAGAAACTAA-GAAAAATCCTCTCGAAAAAAATTATGGAGTAGAAAACTCCGTATTTTAA
77439 AAATAG
129 AAATAG
77445 GAGGAATTTA
Statistics
Matches: 521, Mismatches: 80, Indels: 47
0.80 0.12 0.07
Matches are distributed among these distances:
154 15 0.03
155 3 0.01
156 103 0.20
157 1 0.00
159 4 0.01
161 6 0.01
162 1 0.00
163 120 0.23
164 5 0.01
165 2 0.00
166 70 0.13
167 176 0.34
168 14 0.03
169 1 0.00
ACGTcount: A:0.50, C:0.07, G:0.11, T:0.32
Consensus pattern (162 bp):
AAAATGAATGAATTTTTGAAAACTAATTTAATATAAATTAAATAATAATATTTGATGAATTTTAA
AAATTAGAAACTAAGAAAAATCCTCTCGAAAAAAATTATGGAGTAGAAAACTCCGTATTTTAAAA
ATAGAGAGTTTCAAAAAAAATGAAAAATCATA
Found at i:86648 original size:16 final size:16
Alignment explanation
Indices: 86627--86660 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
86617 GCCTTCTTGA
86627 TTTCATCTTCAAGAAT
1 TTTCATCTTCAAGAAT
86643 TTTCATCTTCAAGAAT
1 TTTCATCTTCAAGAAT
86659 TT
1 TT
86661 GTTGAACCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.29, C:0.18, G:0.06, T:0.47
Consensus pattern (16 bp):
TTTCATCTTCAAGAAT
Found at i:86715 original size:3 final size:3
Alignment explanation
Indices: 86707--86740 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
86697 CGAGTCAGCT
*
86707 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCT TCA T
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA T
86741 TATCTTTGAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.29, C:0.32, G:0.00, T:0.38
Consensus pattern (3 bp):
TCA
Found at i:88353 original size:13 final size:13
Alignment explanation
Indices: 88335--88362 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
88325 AATTTTTGCT
88335 ATGTATCGATACA
1 ATGTATCGATACA
88348 ATGTATCGATACA
1 ATGTATCGATACA
88361 AT
1 AT
88363 ATCCTATGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:88487 original size:33 final size:33
Alignment explanation
Indices: 88450--88527 Score: 120
Period size: 33 Copynumber: 2.4 Consensus size: 33
88440 TACCAAGATC
*
88450 ATGTATCGATACAGTGCATCGATACAAAACAAT
1 ATGTATCGATACAATGCATCGATACAAAACAAT
* **
88483 ATGTATCGATACAATGTATCGATACAAAGTAAT
1 ATGTATCGATACAATGCATCGATACAAAACAAT
88516 ATGTATCGATAC
1 ATGTATCGATAC
88528 TTCTGGGCTT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.28
Consensus pattern (33 bp):
ATGTATCGATACAATGCATCGATACAAAACAAT
Found at i:88501 original size:13 final size:13
Alignment explanation
Indices: 88483--88509 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
88473 ACAAAACAAT
88483 ATGTATCGATACA
1 ATGTATCGATACA
88496 ATGTATCGATACA
1 ATGTATCGATACA
88509 A
1 A
88510 AGTAATATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:94695 original size:404 final size:404
Alignment explanation
Indices: 94172--94970 Score: 1535
Period size: 404 Copynumber: 2.0 Consensus size: 404
94162 ACTACCACAT
*
94172 CCAAGGCTATAATAATGCATGATGTTCTTAAAAGGGTCATGGAAGCATGAAAAGCTCACTAAAAT
1 CCAAGGCTATAATAATGCATGATGTTCTTAAAAGGGTCATGGAAACATGAAAAGCTCACTAAAAT
94237 GATGAGAATAACAAAATCAGCAAGTGAAAGTGAAAAGATGAAAAAATATACCAACAAGATAGAAA
66 GATGAGAATAACAAAATCAGCAAGTGAAAGTGAAAAGATGAAAAAATATACCAACAAGATAGAAA
*
94302 TCCGATTTGTTGGTTTGAACAAGTAATGTAACTTGTTTAACACCTTTGTGTGGCTGAAAACAAGT
131 TCCAATTTGTTGGTTTGAACAAGTAATGTAACTTGTTTAACACCTTTGTGTGGCTGAAAACAAGT
94367 TGGAAAATGATGAAAAAGTGGATGTTTAGGTTATAATATGGGTAGAGATGGATTGGAGTTGTGTA
196 TGGAAAATGATGAAAAAGTGGATGTTTAGGTTATAATATGGGTAGAGATGGATTGGAGTTGTGTA
* *
94432 GTGACCAAGGAGGAAGTGTTTGGAGGTATTTCCATTGGGAGCTATAGGGAGCTACGGGAATGGAC
261 GTGACCAAGGAGGAAGTGTTTGGAGGTATTTCCATTAGGAGCTATAGGGAGCTACGGGAATAGAC
94497 TTTTGTTGAGTTTTTGTGTTGATGTTTTGCTAAGATATGGATGGTAATGAGGCTAGAAAATGTGT
326 TTTTGTTGAGTTTTTGTGTTGATGTTTTGCTAAGATATGGATGGTAATGAGGCTAGAAAATGTGT
94562 TGAAGTGCTCTAAC
391 TGAAGTGCTCTAAC
*
94576 CCAAGGCTATAATAATGCATGATGTTCTTAAAAGGGTCATGGAAACATGAAAAGCTCACTAAACT
1 CCAAGGCTATAATAATGCATGATGTTCTTAAAAGGGTCATGGAAACATGAAAAGCTCACTAAAAT
* *
94641 GATGAGAATAACAAAATCAGCAAGTGAAAGTGAAAAGATTAGAAAATATACCAACAAGATAGAAA
66 GATGAGAATAACAAAATCAGCAAGTGAAAGTGAAAAGATGAAAAAATATACCAACAAGATAGAAA
94706 TCCAATTTGTTGGTTTGAACAAGTAATGTAACTTGTTTAACACCTTTGTGTGGCTGAAAACAAGT
131 TCCAATTTGTTGGTTTGAACAAGTAATGTAACTTGTTTAACACCTTTGTGTGGCTGAAAACAAGT
94771 TGGAAAATGATGAAAAAGTGGATGTTTAGGTTATAATATGGGTAGAGATGGATTGGAGTTGTGTA
196 TGGAAAATGATGAAAAAGTGGATGTTTAGGTTATAATATGGGTAGAGATGGATTGGAGTTGTGTA
94836 GTGACCAAGGAGGAAGTGTTTGGAGGTATTTCCATTAGGAGCTATAGGGAGCTACGGGAATAGAC
261 GTGACCAAGGAGGAAGTGTTTGGAGGTATTTCCATTAGGAGCTATAGGGAGCTACGGGAATAGAC
94901 TTTTGTTGAGTTTTTGTGTTGATGTTTTGCTAAGATATGGATGGTAATGAGGCTAGAAAATGTGT
326 TTTTGTTGAGTTTTTGTGTTGATGTTTTGCTAAGATATGGATGGTAATGAGGCTAGAAAATGTGT
94966 TGAAG
391 TGAAG
94971 AAAGGGATCC
Statistics
Matches: 388, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
404 388 1.00
ACGTcount: A:0.35, C:0.09, G:0.26, T:0.29
Consensus pattern (404 bp):
CCAAGGCTATAATAATGCATGATGTTCTTAAAAGGGTCATGGAAACATGAAAAGCTCACTAAAAT
GATGAGAATAACAAAATCAGCAAGTGAAAGTGAAAAGATGAAAAAATATACCAACAAGATAGAAA
TCCAATTTGTTGGTTTGAACAAGTAATGTAACTTGTTTAACACCTTTGTGTGGCTGAAAACAAGT
TGGAAAATGATGAAAAAGTGGATGTTTAGGTTATAATATGGGTAGAGATGGATTGGAGTTGTGTA
GTGACCAAGGAGGAAGTGTTTGGAGGTATTTCCATTAGGAGCTATAGGGAGCTACGGGAATAGAC
TTTTGTTGAGTTTTTGTGTTGATGTTTTGCTAAGATATGGATGGTAATGAGGCTAGAAAATGTGT
TGAAGTGCTCTAAC
Found at i:95424 original size:20 final size:20
Alignment explanation
Indices: 95399--95472 Score: 75
Period size: 20 Copynumber: 3.9 Consensus size: 20
95389 GTAAAAAGAT
95399 AGAATGTATCGATACATTGA
1 AGAATGTATCGATACATTGA
*
95419 AGAATGTATCGAT--ATTCA
1 AGAATGTATCGATACATTGA
* *
95437 TGCATGTGAT--ATACATTGA
1 AGAATGT-ATCGATACATTGA
*
95456 AAAATGTATCGATACAT
1 AGAATGTATCGATACAT
95473 CTGGGTAAAA
Statistics
Matches: 42, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
17 2 0.05
18 11 0.26
19 10 0.24
20 19 0.45
ACGTcount: A:0.39, C:0.11, G:0.18, T:0.32
Consensus pattern (20 bp):
AGAATGTATCGATACATTGA
Found at i:96421 original size:32 final size:32
Alignment explanation
Indices: 96377--96443 Score: 98
Period size: 32 Copynumber: 2.1 Consensus size: 32
96367 TTTTTTTTAA
*
96377 AAAAAAGGTGCCACTAACTTGTGTGGCCTTTG
1 AAAAAAGGTGCCACCAACTTGTGTGGCCTTTG
* * *
96409 AAAAAAGTTGCCACCGACTTGTGTGGGCTTTG
1 AAAAAAGGTGCCACCAACTTGTGTGGCCTTTG
96441 AAA
1 AAA
96444 GGGTGTCACC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (32 bp):
AAAAAAGGTGCCACCAACTTGTGTGGCCTTTG
Found at i:96468 original size:28 final size:28
Alignment explanation
Indices: 96383--96725 Score: 384
Period size: 28 Copynumber: 11.9 Consensus size: 28
96373 TTAAAAAAAA
* *
96383 GGTGCCACTAACTTGTGTGGCCTTTGAAAAAA
1 GGTGCCACTGACTTGTG-GG-CTTTG--AAAG
* *
96415 GTTGCCACCGACTTGTGTGGGCTTTGAAAG
1 GGTGCCACTGAC-T-TGTGGGCTTTGAAAG
* * *
96445 GGTGTCACCGACTTATGGGCTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
96473 GGTATGCCACTGACTTGTGGGCTTTGAAAG
1 GG--TGCCACTGACTTGTGGGCTTTGAAAG
96503 GGTGCCACTGACTTGTGGGCTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
* *
96531 GGTGCAACTGAATTGTGGGCTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
96559 GGTGCCACT-AGCTTGTGGGCTTTGAAAG
1 GGTGCCACTGA-CTTGTGGGCTTTGAAAG
** *
96587 AATGCCACTGACTTGTGGTCTTTTG-AAG
1 GGTGCCACTGACTTGTGGGC-TTTGAAAG
*
96615 AGATGCCACTGACTTGTGGGCTTTGAAAG
1 -GGTGCCACTGACTTGTGGGCTTTGAAAG
* * * *
96644 GATGCCACTCATTTGTGGGATTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
*
96672 GGTGCCACTGACTTGTGGGCTTTGAAAT
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
* * *
96700 GATGCCATTGACCTGTGGGCTTTGAA
1 GGTGCCACTGACTTGTGGGCTTTGAA
96726 GAGATGAACA
Statistics
Matches: 272, Mismatches: 30, Indels: 22
0.84 0.09 0.07
Matches are distributed among these distances:
27 1 0.00
28 185 0.68
29 27 0.10
30 38 0.14
32 14 0.05
33 3 0.01
34 4 0.01
ACGTcount: A:0.21, C:0.17, G:0.31, T:0.30
Consensus pattern (28 bp):
GGTGCCACTGACTTGTGGGCTTTGAAAG
Found at i:97992 original size:1 final size:1
Alignment explanation
Indices: 97986--98064 Score: 59
Period size: 1 Copynumber: 79.0 Consensus size: 1
97976 ATCTAGACCC
* * * * ** ** * *
97986 TTTTTTTGTTTGTTTGTTTGTTTTTTTTTTTTTTTTGCTTTTGGTTTTTCTTTTTTTTGTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
*
98051 TGTTTTTTTTTTTT
1 TTTTTTTTTTTTTT
98065 GCACGAAGGA
Statistics
Matches: 59, Mismatches: 19, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
1 59 1.00
ACGTcount: A:0.00, C:0.03, G:0.11, T:0.86
Consensus pattern (1 bp):
T
Found at i:112103 original size:20 final size:20
Alignment explanation
Indices: 112043--112113 Score: 79
Period size: 20 Copynumber: 3.5 Consensus size: 20
112033 AGACATAACA
* *
112043 TATCGATACATTGAAGAATG
1 TATCGATACATTAAAAAATG
* * * *
112063 TATTGATACATTCATACATG
1 TATCGATACATTAAAAAATG
*
112083 TATCGATACACTAAAAAATG
1 TATCGATACATTAAAAAATG
112103 TATCGATACAT
1 TATCGATACAT
112114 CCGGGTAAAA
Statistics
Matches: 40, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.41, C:0.14, G:0.13, T:0.32
Consensus pattern (20 bp):
TATCGATACATTAAAAAATG
Found at i:117444 original size:52 final size:51
Alignment explanation
Indices: 117336--117756 Score: 267
Period size: 52 Copynumber: 8.1 Consensus size: 51
117326 ATGTAGATTT
* * * * * **
117336 AAGGCCTGCGATACTAGAATTAAAGATGACACAA-GTGTCAATGTGCTGATTT
1 AAGGCCAGCGACATTAGACTTAAAGATGA-A-AAGGTGCCAATGTGCTGATCC
* * * *
117388 AAGGCCAGCGACATTGGACTTAAAGATGGAAAATGTGCCAATATGCTAATCC
1 AAGGCCAGCGACATTAGACTTAAAGAT-GAAAAGGTGCCAATGTGCTGATCC
* * * * ** * ** ** *
117440 AAGGCCAGTGACATTTG-TTTGAAGGGCCGCAAAGGCCCCAATACGCTGATCT
1 AAGGCCAGCGACATTAGACTT-AA-AGATGAAAAGGTGCCAATGTGCTGATCC
* * * * *
117492 AAGGCCAGCGACATTAGAGTTAAGGATGGCAAAGGCGCCAATGTGCTTATCC
1 AAGGCCAGCGACATTAGACTTAAAGAT-GAAAAGGTGCCAATGTGCTGATCC
* * * * ** *
117544 AAAGCCAACGACATTAGACATAAAGATG-TAAGGATGCTTATGTGCTGATTC
1 AAGGCCAGCGACATTAGACTTAAAGATGAAAAGG-TGCCAATGTGCTGATCC
* ** * *
117595 ATGGCCAGCGACATT-GGTTTCAGAGATGACAAAGGTGCCAATATGCTGATCC
1 AAGGCCAGCGACATTAGACTT-AAAGATGA-AAAGGTGCCAATGTGCTGATCC
* * * * * *
117647 AAGGCTAGCAACATTAGACTTAAAGATGATAAGGGTGCC-ATGTACTAATTC
1 AAGGCCAGCGACATTAGACTTAAAGATGA-AAAGGTGCCAATGTGCTGATCC
* * *
117698 ATGGCTAGCGACATTAGACTTAAAGATGACAAAGTTGCCAATGTGCTGATCC
1 AAGGCCAGCGACATTAGACTTAAAGATGA-AAAGGTGCCAATGTGCTGATCC
117750 AAGGCCA
1 AAGGCCA
117757 ACAACTTTGA
Statistics
Matches: 279, Mismatches: 78, Indels: 24
0.73 0.20 0.06
Matches are distributed among these distances:
50 6 0.02
51 79 0.28
52 182 0.65
53 12 0.04
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.23
Consensus pattern (51 bp):
AAGGCCAGCGACATTAGACTTAAAGATGAAAAGGTGCCAATGTGCTGATCC
Found at i:117628 original size:103 final size:102
Alignment explanation
Indices: 117494--117761 Score: 308
Period size: 103 Copynumber: 2.6 Consensus size: 102
117484 GCTGATCTAA
* * * * *
117494 GGCCAGCGACATTAGAGTTA-AGGATGGCAAAGGCGCCAATGTGCTTATCCAAAGCCAACGACAT
1 GGCCAGCGACATTAG-GTTAGA-GATGACAAAGGTGCCAATGTGCTGATCCAAGGCCAACAACAT
* * *
117558 TAGACATAAAGATG-TAAGGATGCTTATGTGCTGATTCAT
64 TAGACATAAAGATGATAAGGATGC-CATGTACTAATTCAT
* * *
117597 GGCCAGCGACATT-GGTTTCAGAGATGACAAAGGTGCCAATATGCTGATCCAAGGCTAGCAACAT
1 GGCCAGCGACATTAGG-TT-AGAGATGACAAAGGTGCCAATGTGCTGATCCAAGGCCAACAACAT
* *
117661 TAGACTTAAAGATGATAAGGGTGCCATGTACTAATTCAT
64 TAGACATAAAGATGATAAGGATGCCATGTACTAATTCAT
* * * *
117700 GGCTAGCGACATTAGACTTAAAGATGACAAAGTTGCCAATGTGCTGATCCAAGGCCAACAAC
1 GGCCAGCGACATTAG-GTTAGAGATGACAAAGGTGCCAATGTGCTGATCCAAGGCCAACAAC
117762 TTTGAGCTTG
Statistics
Matches: 139, Mismatches: 20, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
101 1 0.01
102 3 0.02
103 123 0.88
104 12 0.09
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.23
Consensus pattern (102 bp):
GGCCAGCGACATTAGGTTAGAGATGACAAAGGTGCCAATGTGCTGATCCAAGGCCAACAACATTA
GACATAAAGATGATAAGGATGCCATGTACTAATTCAT
Found at i:118047 original size:31 final size:31
Alignment explanation
Indices: 117967--118185 Score: 147
Period size: 31 Copynumber: 7.4 Consensus size: 31
117957 GGCTTTTGCG
* * * *
117967 TGCCACTAGCTCATGCGGGCTTTGAGAAAGGA
1 TGCCACCAACTCATGTGGGCTTTGA-AAAGGT
* * *
117999 TGCCACCATCTCGTGTGGACTTTGAAAAGGT
1 TGCCACCAACTCATGTGGGCTTTGAAAAGGT
*
118030 TGCTACCAACTCATGTGGGCTTTGAAAAGGT
1 TGCCACCAACTCATGTGGGCTTTGAAAAGGT
* *
118061 TACCACCAACTCATAT-GG---T---AA---
1 TGCCACCAACTCATGTGGGCTTTGAAAAGGT
* * * * * *
118082 TGCCACTAGCTCGTATAGGCTTTGAAGAGGT
1 TGCCACCAACTCATGTGGGCTTTGAAAAGGT
*
118113 TAG-CACCAACTCATGTAGGCTTTGAAGAA-GT
1 T-GCCACCAACTCATGTGGGCTTTGAA-AAGGT
* * *
118144 TGCCATCAATTCGTGTGGGCTTTGAAAAGGT
1 TGCCACCAACTCATGTGGGCTTTGAAAAGGT
118175 TGCCACCAACT
1 TGCCACCAACT
118186 TAAAAGAGGT
Statistics
Matches: 144, Mismatches: 29, Indels: 29
0.71 0.14 0.14
Matches are distributed among these distances:
21 12 0.08
22 2 0.01
24 2 0.01
25 1 0.01
27 1 0.01
28 1 0.01
30 5 0.03
31 98 0.68
32 22 0.15
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.27
Consensus pattern (31 bp):
TGCCACCAACTCATGTGGGCTTTGAAAAGGT
Found at i:118318 original size:29 final size:29
Alignment explanation
Indices: 118276--118332 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
118266 CTAAATTATG
* * *
118276 TGGACTTTGGAAAGGGTGCTACTGACTTT
1 TGGACTTTGAAAAGGATGCCACTGACTTT
118305 TGGACTTTGAAAAGGATGCCACTGACTT
1 TGGACTTTGAAAAGGATGCCACTGACTT
118333 GTGTGGTTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.32
Consensus pattern (29 bp):
TGGACTTTGAAAAGGATGCCACTGACTTT
Found at i:122693 original size:20 final size:21
Alignment explanation
Indices: 122668--122720 Score: 74
Period size: 20 Copynumber: 2.6 Consensus size: 21
122658 GTTACAAGCA
*
122668 ATGTATCGATACATT-T-CAT
1 ATGTATCGATACATTGTACCT
122687 CATGTATCGATACATTGTACCT
1 -ATGTATCGATACATTGTACCT
122709 ATGTATCGATAC
1 ATGTATCGATAC
122721 GAACAGTGGT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
20 15 0.50
21 13 0.43
22 2 0.07
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (21 bp):
ATGTATCGATACATTGTACCT
Found at i:122795 original size:19 final size:19
Alignment explanation
Indices: 122751--122806 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
122741 TTGCCAATCT
* **
122751 CATGTATTGATACAATTGTC
1 CATGTATCGATACAA-TGAA
122771 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
122790 CATGTATCGATACAATG
1 CATGTATCGATACAATG
122807 TATCGATACA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 19 0.58
20 14 0.42
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:122809 original size:13 final size:13
Alignment explanation
Indices: 122791--122817 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
122781 TACAATGAAC
122791 ATGTATCGATACA
1 ATGTATCGATACA
122804 ATGTATCGATACA
1 ATGTATCGATACA
122817 A
1 A
122818 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:123373 original size:26 final size:24
Alignment explanation
Indices: 123344--123393 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 24
123334 GATATCAAAG
*
123344 TTTTCATTTTTCTCACCCTTTATAAA
1 TTTTCATTTTGCTC-CCC-TTATAAA
*
123370 TTTTCGTTTTGCTCCCCTTATAAA
1 TTTTCATTTTGCTCCCCTTATAAA
123394 AAATTTCTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.20, C:0.24, G:0.04, T:0.52
Consensus pattern (24 bp):
TTTTCATTTTGCTCCCCTTATAAA
Found at i:123400 original size:26 final size:26
Alignment explanation
Indices: 123345--123400 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
123335 ATATCAAAGT
* * *
123345 TTTCATTTTTCTCACCCTTTATAAAT
1 TTTCATTTTGCTCACCCTTTAAAAAA
*
123371 TTTCGTTTTGCTC-CCCTTATAAAAAA
1 TTTCATTTTGCTCACCCTT-TAAAAAA
123397 TTTC
1 TTTC
123401 TCATGCTTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.23, C:0.23, G:0.04, T:0.50
Consensus pattern (26 bp):
TTTCATTTTGCTCACCCTTTAAAAAA
Found at i:123427 original size:18 final size:18
Alignment explanation
Indices: 123390--123429 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
123380 GCTCCCCTTA
**
123390 TAAAAAATTTCTCATGCT
1 TAAAAAATTTCTCACCCT
*
123408 TAAAAAATTTCTCCCCCT
1 TAAAAAATTTCTCACCCT
123426 TAAA
1 TAAA
123430 CGGTTATCTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.40, C:0.23, G:0.03, T:0.35
Consensus pattern (18 bp):
TAAAAAATTTCTCACCCT
Found at i:125519 original size:29 final size:30
Alignment explanation
Indices: 125462--125525 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 30
125452 AAAAAAGCAT
*
125462 AATTCATTCACACAACATAATAAACATCAA
1 AATTCATTCACACAACATAACAAACATCAA
*
125492 AATTCATTCA-ACAACAAAGCACAAATCATCAA
1 AATTCATTCACACAACATA--ACAAA-CATCAA
125524 AA
1 AA
125526 ATCACAATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 7 0.24
30 10 0.34
31 4 0.14
32 8 0.28
ACGTcount: A:0.55, C:0.23, G:0.02, T:0.20
Consensus pattern (30 bp):
AATTCATTCACACAACATAACAAACATCAA
Found at i:127422 original size:16 final size:16
Alignment explanation
Indices: 127397--127429 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
127387 TGTTCATCAA
127397 CTTCTTTTGGA-GCTT
1 CTTCTTTTGGATGCTT
127412 CTTCATTTTGGATGCTT
1 CTTC-TTTTGGATGCTT
127429 C
1 C
127430 CATCTTGCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.25
16 7 0.44
17 5 0.31
ACGTcount: A:0.09, C:0.21, G:0.18, T:0.52
Consensus pattern (16 bp):
CTTCTTTTGGATGCTT
Found at i:133370 original size:18 final size:17
Alignment explanation
Indices: 133322--133380 Score: 59
Period size: 16 Copynumber: 3.4 Consensus size: 17
133312 ATCTAGCTTG
133322 TTTTTCCTTATTTTCTCTC
1 TTTTT-CTT-TTTTCTCTC
*
133341 TATTTCTTTTCTT-TCT-
1 TTTTTCTTTT-TTCTCTC
*
133357 TCTTTCTTTTTTCTCTC
1 TTTTTCTTTTTTCTCTC
133374 TTTTTCT
1 TTTTTCT
133381 CCCTATTTGC
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
15 2 0.06
16 12 0.35
17 11 0.32
18 5 0.15
19 4 0.12
ACGTcount: A:0.03, C:0.24, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTTTCTTTTTTCTCTC
Found at i:135419 original size:85 final size:85
Alignment explanation
Indices: 135268--135633 Score: 337
Period size: 85 Copynumber: 4.3 Consensus size: 85
135258 TTAAACCAAC
* * * * * *
135268 AAGTCAACAAAAGAT-AAAAGATTT-TCTCGAGACTAAGCTGATAAGTAAACAAGAGATGAGAGA
1 AAGTCAACAAAGGATAAAAAGATTTACCTAG-GACTAAGCTGACAAGTAAACAAGGGATGAAAGA
135331 GTTGATCAGGATTAAACTGAT
65 GTTGATCAGGATTAAACTGAT
* * ** *
135352 AAGTCAACAAAGGATAAAAGGATTTACCTAGGACTAAGCCGACCGGTAAATAAGGGATGAAAGAG
1 AAGTCAACAAAGGATAAAAAGATTTACCTAGGACTAAGCTGACAAGTAAACAAGGGATGAAAGAG
* *
135417 TTGACCAAGATTAAACTGAT
66 TTGATCAGGATTAAACTGAT
* * * * * *
135437 AAGTCAACAAAGGTTAAAAAGATTTA-CTCAGAACGAGGCTAACAACTAAACAAGGGATGAAAGA
1 AAGTCAACAAAGGATAAAAAGATTTACCT-AGGACTAAGCTGACAAGTAAACAAGGGATGAAAGA
* * * *
135501 ATTGATAAGGATTGAACCGAT
65 GTTGATCAGGATTAAACTGAT
* * ** * * *
135522 AAGTCAACAAAGGATAAAAAGATTTACCCAAGACTAAGCTGGTAGGTAAACAAAGGAT-AAAAAG
1 AAGTCAACAAAGGATAAAAAGATTTACCTAGGACTAAGCTGACAAGTAAACAAGGGATGAAAGAG
* * * * *
135586 TTTGAT-TGAGACTGAACAGAC
66 -TTGATCAG-GATTAAACTGAT
*
135607 AAGTCAACAAAGGATAAAAGGATTTAC
1 AAGTCAACAAAGGATAAAAAGATTTAC
135634 TCGAGACTAA
Statistics
Matches: 227, Mismatches: 49, Indels: 11
0.79 0.17 0.04
Matches are distributed among these distances:
84 21 0.09
85 202 0.89
86 4 0.02
ACGTcount: A:0.46, C:0.13, G:0.22, T:0.20
Consensus pattern (85 bp):
AAGTCAACAAAGGATAAAAAGATTTACCTAGGACTAAGCTGACAAGTAAACAAGGGATGAAAGAG
TTGATCAGGATTAAACTGAT
Found at i:135641 original size:85 final size:84
Alignment explanation
Indices: 135261--135698 Score: 334
Period size: 85 Copynumber: 5.2 Consensus size: 84
135251 ACCGAGGTTA
* * *
135261 AACCAACAAGTCAACAAAAGAT-AAAAGATTTTCTCGAGACTAAGCTGATAAGTAAAC-AAGAGA
1 AACCGACAAGTCAACAAAGGATAAAAAGATTTACTCGAGACTAAGCTGATAAGTAAACAAAG-GA
* * * *
135324 TGAGAGAGTTGATCAGGATTA
65 TGAAAAAGTTGAT-AAGATTG
* * * * * *** * *
135345 AACTGATAAGTCAACAAAGGATAAAAGGATTTAC-CTAGGACTAAGCCGACCGGTAAATAAGGGA
1 AACCGACAAGTCAACAAAGGATAAAAAGATTTACTCGA-GACTAAGCTGATAAGTAAACAAAGGA
* * *
135409 TGAAAGAGTTGACCAAGATTA
65 TGAAAAAGTTGA-TAAGATTG
* * * * * * * * *
135430 AACTGATAAGTCAACAAAGGTTAAAAAGATTTACTC-AGAACGAGGCTAACAACTAAACAAGGGA
1 AACCGACAAGTCAACAAAGGATAAAAAGATTTACTCGAG-ACTAAGCTGATAAGTAAACAAAGGA
135494 TGAAAGAA-TTGATAAGGATTG
65 TGAAA-AAGTTGATAA-GATTG
* * * * *
135515 AACCGATAAGTCAACAAAGGATAAAAAGATTTACCCAAGACTAAGCTGGTAGGTAAACAAAGGAT
1 AACCGACAAGTCAACAAAGGATAAAAAGATTTACTCGAGACTAAGCTGATAAGTAAACAAAGGAT
* *
135580 -AAAAAGTTTGATTGAGACTG
66 GAAAAAG-TTGA-TAAGATTG
* * *
135600 AACAGACAAGTCAACAAAGGATAAAAGGATTTACTCGAGACTAAG-TCGATATGTAAACAAAGGA
1 AACCGACAAGTCAACAAAGGATAAAAAGATTTACTCGAGACTAAGCT-GATAAGTAAACAAAGGA
* * *
135664 -AAAAAAGTTTGACCAAGAATG
65 TGAAAAAG-TTGA-TAAGATTG
135685 AACCGACAAGTCAA
1 AACCGACAAGTCAA
135699 TTAATTAAAA
Statistics
Matches: 286, Mismatches: 54, Indels: 27
0.78 0.15 0.07
Matches are distributed among these distances:
83 2 0.01
84 27 0.09
85 249 0.87
86 8 0.03
ACGTcount: A:0.47, C:0.13, G:0.21, T:0.19
Consensus pattern (84 bp):
AACCGACAAGTCAACAAAGGATAAAAAGATTTACTCGAGACTAAGCTGATAAGTAAACAAAGGAT
GAAAAAGTTGATAAGATTG
Found at i:135659 original size:43 final size:43
Alignment explanation
Indices: 135519--135670 Score: 141
Period size: 43 Copynumber: 3.6 Consensus size: 43
135509 GGATTGAACC
* * * *
135519 GATAAGTCAACAAAGGATAAAAAGATTTACCCAAGACTAAGCT
1 GATAAGTAAACAAAGGATAAAAAGATTTACTCGAGACTAAGCA
* * *
135562 GGTAGGTAAACAAAGGATAAAAAG-TTTGA-TTGAGACTGAA-CA
1 GATAAGTAAACAAAGGATAAAAAGATTT-ACTCGAGACT-AAGCA
* * *
135604 GACAAGTCAACAAAGGATAAAAGGATTTACTCGAGACTAAGTC-
1 GATAAGTAAACAAAGGATAAAAAGATTTACTCGAGACTAAG-CA
* *
135647 GATATGTAAACAAAGGAAAAAAAG
1 GATAAGTAAACAAAGGATAAAAAG
135671 TTTGACCAAG
Statistics
Matches: 85, Mismatches: 18, Indels: 12
0.74 0.16 0.10
Matches are distributed among these distances:
42 31 0.36
43 53 0.62
44 1 0.01
ACGTcount: A:0.49, C:0.12, G:0.21, T:0.18
Consensus pattern (43 bp):
GATAAGTAAACAAAGGATAAAAAGATTTACTCGAGACTAAGCA
Found at i:135659 original size:170 final size:169
Alignment explanation
Indices: 135182--135659 Score: 439
Period size: 170 Copynumber: 2.8 Consensus size: 169
135172 ACCAAACAGT
* * * * * * *
135182 TAAGTCAACAAAGGATGAAAAAG-GTTACCTGAA-ACTAAGGCGATAGGTAGATAAAGGAT-ACG
1 TAAGTCAACAAAGGAT-AAAAAGATTTACC-CAAGACTAAGCCGACAGGTAAACAAAGGATGA-A
* * ** * *
135244 AAGGTTGACCGAGGTTAAACCA-ACAAGTCAACAAAAGATAAAAGATTTTCTCGAGACTAAGCTG
63 AAAGTTGACCAAGACTAAA-CAGACAAGTCAACAAAGGATAAAAGATTTACTCGAGACTAAGCTG
* * * *
135308 ATAAGTAAACAAGAGATGAGAGAGTTGATCAGGATTAAACTGA
127 ATAAGTAAACAAGAGATGAAAGAATTGATAAGGATTAAACCGA
* * * * * * *
135351 TAAGTCAACAAAGGATAAAAGGATTTACCTAGGACTAAGCCGACCGGTAAATAAGGGATGAAAGA
1 TAAGTCAACAAAGGATAAAAAGATTTACCCAAGACTAAGCCGACAGGTAAACAAAGGATGAAAAA
* * * * * * * *
135416 GTTGACCAAGATTAAACTGATAAGTCAACAAAGGTTAAAAAGATTTACTC-AGAACGAGGCTAAC
66 GTTGACCAAGACTAAACAGACAAGTCAACAAAGGAT-AAAAGATTTACTCGAG-ACTAAGCTGAT
* * *
135480 AACTAAACAAGGGATGAAAGAATTGATAAGGATTGAACCGA
129 AAGTAAACAAGAGATGAAAGAATTGATAAGGATTAAACCGA
* **
135521 TAAGTCAACAAAGGATAAAAAGATTTACCCAAGACTAAGCTGGTAGGTAAACAAAGGAT-AAAAA
1 TAAGTCAACAAAGGATAAAAAGATTTACCCAAGACTAAGCCGACAGGTAAACAAAGGATGAAAAA
*** *
135585 GTTTGATTGAGACTGAACAGACAAGTCAACAAAGGATAAAAGGATTTACTCGAGACTAAG-TCGA
66 G-TTGACCAAGACTAAACAGACAAGTCAACAAAGGATAAAA-GATTTACTCGAGACTAAGCT-GA
*
135649 TATGTAAACAA
128 TAAGTAAACAA
135660 AGGAAAAAAA
Statistics
Matches: 245, Mismatches: 54, Indels: 19
0.77 0.17 0.06
Matches are distributed among these distances:
168 7 0.03
169 83 0.34
170 153 0.62
171 2 0.01
ACGTcount: A:0.45, C:0.13, G:0.22, T:0.19
Consensus pattern (169 bp):
TAAGTCAACAAAGGATAAAAAGATTTACCCAAGACTAAGCCGACAGGTAAACAAAGGATGAAAAA
GTTGACCAAGACTAAACAGACAAGTCAACAAAGGATAAAAGATTTACTCGAGACTAAGCTGATAA
GTAAACAAGAGATGAAAGAATTGATAAGGATTAAACCGA
Found at i:135791 original size:80 final size:81
Alignment explanation
Indices: 135692--135859 Score: 214
Period size: 80 Copynumber: 2.1 Consensus size: 81
135682 ATGAACCGAC
* * * *
135692 AAGTCAATTAATTAAAAGGTTGGCCAGGGCAAAACTGATAAAGCCAACGGGTTAGAAGGGTT-AC
1 AAGTCAACTAATTAAAAGGTTGGCCAAGGCAAAACTGATAAAGCCAACAGATTAGAAGGGTTGAC
* *
135756 CTAGG-GAGAAATGATA
66 CAAGGTGA-AAACGATA
** **
135772 AAGTCAACTAATTGGAAGGTTGGCCAAGGTGAAACTGATAAAGCCAACAGATTAGAAGGGTTGAC
1 AAGTCAACTAATTAAAAGGTTGGCCAAGGCAAAACTGATAAAGCCAACAGATTAGAAGGGTTGAC
*
135837 CAAGGTGAAACCGATA
66 CAAGGTGAAAACGATA
135853 AAGTCAA
1 AAGTCAA
135860 ATAAGAATGA
Statistics
Matches: 75, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
80 54 0.72
81 19 0.25
82 2 0.03
ACGTcount: A:0.40, C:0.14, G:0.27, T:0.19
Consensus pattern (81 bp):
AAGTCAACTAATTAAAAGGTTGGCCAAGGCAAAACTGATAAAGCCAACAGATTAGAAGGGTTGAC
CAAGGTGAAAACGATA
Found at i:135843 original size:41 final size:41
Alignment explanation
Indices: 135723--135855 Score: 148
Period size: 40 Copynumber: 3.3 Consensus size: 41
135713 GGCCAGGGCA
* * *
135723 AAACTGATAAAGCCAACGGGTTAGAAGGGTT-ACCTAGG-G
1 AAACTGATAAAGCCAACAGATTAGAAGGGTTGACCAAGGTG
* * * *
135762 AGAAATGATAAAGTCAACTA-ATTGGAA-GGTTGGCCAAGGTG
1 A-AACTGATAAAGCCAAC-AGATTAGAAGGGTTGACCAAGGTG
135803 AAACTGATAAAGCCAACAGATTAGAAGGGTTGACCAAGGTG
1 AAACTGATAAAGCCAACAGATTAGAAGGGTTGACCAAGGTG
*
135844 AAACCGATAAAG
1 AAACTGATAAAG
135856 TCAAATAAGA
Statistics
Matches: 76, Mismatches: 12, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
39 6 0.08
40 44 0.58
41 26 0.34
ACGTcount: A:0.41, C:0.14, G:0.28, T:0.18
Consensus pattern (41 bp):
AAACTGATAAAGCCAACAGATTAGAAGGGTTGACCAAGGTG
Found at i:135918 original size:46 final size:46
Alignment explanation
Indices: 135858--136119 Score: 181
Period size: 46 Copynumber: 5.7 Consensus size: 46
135848 CGATAAAGTC
* **
135858 AAATAAGAATGAAAAATGTTTGACCAGGGTGGTAATCGATACAACT
1 AAATGAGAATGAAAAGGGTTTGACCAGGGTGGTAATCGATACAACT
* * * * * **
135904 AAATGAGAACGAAAAGGGTTTGACTAGGGTGATGATCGATCCAGTT
1 AAATGAGAATGAAAAGGGTTTGACCAGGGTGGTAATCGATACAACT
* * * * * *
135950 AAATGAGGATGAAAAGGGTTTGACCAAGGTGGTAACCAATA-TAGT
1 AAATGAGAATGAAAAGGGTTTGACCAGGGTGGTAATCGATACAACT
* * * * * * *
135995 CAAATAAGGATGAAAAGGGTTTGACTAGGATGGTAATTGATA-TAGT
1 -AAATGAGAATGAAAAGGGTTTGACCAGGGTGGTAATCGATACAACT
** * * *
136041 AAAACCCAAAATGAAAAGGGTTTGACTAGGGTGGTAACCGATAC-ACT
1 -AAA-TGAGAATGAAAAGGGTTTGACCAGGGTGGTAATCGATACAACT
**
136088 CAAACAAGAATGCAAAA-GGTTTGACCAGGGTG
1 -AAATGAGAATG-AAAAGGGTTTGACCAGGGTG
136120 ATAACTAATA
Statistics
Matches: 170, Mismatches: 42, Indels: 8
0.77 0.19 0.04
Matches are distributed among these distances:
45 1 0.01
46 129 0.76
47 40 0.24
ACGTcount: A:0.40, C:0.11, G:0.27, T:0.23
Consensus pattern (46 bp):
AAATGAGAATGAAAAGGGTTTGACCAGGGTGGTAATCGATACAACT
Found at i:136131 original size:46 final size:45
Alignment explanation
Indices: 135827--136150 Score: 141
Period size: 46 Copynumber: 7.1 Consensus size: 45
135817 AACAGATTAG
* * * * * *
135827 AAGGGTTGACCAAGGTGA-AACCGATAAAGTCAAATAAGAATGAAA
1 AAGGTTTGACCAGGGTGATAACCAATACACTCAAACAAGAATG-AA
* * * * ** *
135872 AATGTTTGACCAGGGTGGTAATCGATACAACT-AAATGAGAACGAA
1 AAGGTTTGACCAGGGTGATAACCAATAC-ACTCAAACAAGAATGAA
* * * * * * * ** *
135917 AAGGGTTTGACTAGGGTGATGATCGATCCAGTTAAATGAGGATGAA
1 AA-GGTTTGACCAGGGTGATAACCAATACACTCAAACAAGAATGAA
* * * * * *
135963 AAGGGTTTGACCAAGGTGGTAACCAATATAGTCAAATAAGGATGAA
1 AA-GGTTTGACCAGGGTGATAACCAATACACTCAAACAAGAATGAA
* * * *** * * *
136009 AAGGGTTTGACTAGGATGGTAATTGATATAGTAAAACCCAA-AATGAA
1 AA-GGTTTGACCAGGGTGATAACCAATACACTCAAA--CAAGAATGAA
* * *
136056 AAGGGTTTGACTAGGGTGGTAACCGATACACTCAAACAAGAATGCAA
1 AA-GGTTTGACCAGGGTGATAACCAATACACTCAAACAAGAATG-AA
* * * *
136103 AAGGTTTGACCAGGGTGATAACTAATACAGTCAAATAAGGATGAA
1 AAGGTTTGACCAGGGTGATAACCAATACACTCAAACAAGAATGAA
136148 AAG
1 AAG
136151 AATTTGTTTG
Statistics
Matches: 222, Mismatches: 49, Indels: 16
0.77 0.17 0.06
Matches are distributed among these distances:
45 28 0.13
46 151 0.68
47 41 0.18
48 2 0.01
ACGTcount: A:0.41, C:0.11, G:0.26, T:0.22
Consensus pattern (45 bp):
AAGGTTTGACCAGGGTGATAACCAATACACTCAAACAAGAATGAA
Found at i:140217 original size:52 final size:51
Alignment explanation
Indices: 140160--140299 Score: 174
Period size: 51 Copynumber: 2.7 Consensus size: 51
140150 TATTACTTGT
*
140160 ATGTATCAACACAAT-AAAGAATGTATCAATACTTTTAGGTCAAAAACCTAGA
1 ATGTATCAATACAATGAAA-AATGTATCAATACTTTTAGGT-AAAAACCTAGA
* * * * *
140212 ATGTATCGATAGAATGAAAAATGTATCGATACATTTAGGTTAAAACCTAGA
1 ATGTATCAATACAATGAAAAATGTATCAATACTTTTAGGTAAAAACCTAGA
* *
140263 ATGTATCCATATAATGAAAAATGTATCAATACATTTT
1 ATGTATCAATACAATGAAAAATGTATCAATAC-TTTT
140300 CTTTCCTGAA
Statistics
Matches: 76, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
51 39 0.51
52 34 0.45
53 3 0.04
ACGTcount: A:0.44, C:0.12, G:0.13, T:0.31
Consensus pattern (51 bp):
ATGTATCAATACAATGAAAAATGTATCAATACTTTTAGGTAAAAACCTAGA
Found at i:140279 original size:51 final size:52
Alignment explanation
Indices: 140179--140298 Score: 188
Period size: 51 Copynumber: 2.3 Consensus size: 52
140169 CACAATAAAG
* *
140179 AATGTATCAATACTTTTAGGTCAAAAACCTAGAATGTATCGATAGAATGAAA
1 AATGTATCAATACATTTAGGTCAAAAACCTAGAATGTATCCATAGAATGAAA
* * *
140231 AATGTATCGATACATTTAGGT-TAAAACCTAGAATGTATCCATATAATGAAA
1 AATGTATCAATACATTTAGGTCAAAAACCTAGAATGTATCCATAGAATGAAA
140282 AATGTATCAATACATTT
1 AATGTATCAATACATTT
140299 TCTTTCCTGA
Statistics
Matches: 62, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
51 43 0.69
52 19 0.31
ACGTcount: A:0.43, C:0.12, G:0.13, T:0.32
Consensus pattern (52 bp):
AATGTATCAATACATTTAGGTCAAAAACCTAGAATGTATCCATAGAATGAAA
Found at i:140983 original size:91 final size:88
Alignment explanation
Indices: 140766--141067 Score: 363
Period size: 90 Copynumber: 3.3 Consensus size: 88
140756 AACCAAGCTT
* * *
140766 TATGATGCATTGATACCATCTAGTGGTTGAGGAAA-AAGGATATGATTAGGAATATGTAGTTAGG
1 TATGATGCA-TCATACCATCTAGTGGTT-AAGAAAGAA-GATATGATT-GGAAAATGTAGTTAGG
* *
140830 ATATACTTGCCCTAGAGATCTTGGATTTA
62 ATATCCTTGCCC-GGAGATCTTGGA-TTA
* * *
140859 TATGATGCATCAGTACCATCTAGTGGTTGAGAAAGAAGATATGATTGGCAAAATGCAGTTGGGAT
1 TATGATGCATCA-TACCATCTAGTGGTTAAGAAAGAAGATATGATTGG-AAAATGTAGTTAGGAT
140924 ATCCTTGCCACGGAGATCTTGGATTA
64 ATCCTTGCC-CGGAGATCTTGGATTA
* * *
140950 TATGATGCATCATTACCATCTAGTGGTTAAGAAAGAGGATATGATTGGGAAATGTGGTTAGGATA
1 TATGATGCATCA-TACCATCTAGTGGTTAAGAAAGAAGATATGATTGGAAAATGTAGTTAGGATA
* *
141015 TCCTTGCCCCGAAGATCTTAGATTA
65 TCCTTG-CCCGGAGATCTTGGATTA
*
141040 TATGATGCATCAATACTATCTAGTGGTT
1 TATGATGCATC-ATACCATCTAGTGGTT
141068 GATGAAAAGG
Statistics
Matches: 185, Mismatches: 18, Indels: 15
0.85 0.08 0.07
Matches are distributed among these distances:
90 58 0.31
91 53 0.29
92 47 0.25
93 27 0.15
ACGTcount: A:0.31, C:0.13, G:0.25, T:0.32
Consensus pattern (88 bp):
TATGATGCATCATACCATCTAGTGGTTAAGAAAGAAGATATGATTGGAAAATGTAGTTAGGATAT
CCTTGCCCGGAGATCTTGGATTA
Found at i:141061 original size:90 final size:91
Alignment explanation
Indices: 140766--141096 Score: 409
Period size: 91 Copynumber: 3.6 Consensus size: 91
140756 AACCAAGCTT
** * * *
140766 TATGATGCATTGATACCATCTAGTGGTTGAGGAAAAAGGATATGATTAGGAATATGTAGTTAGGA
1 TATGATGCATCAATACCATCTAGTGGTTGAAGAAAGAGGATATGATTGGGAA-ATGTAGTTAGGA
* *
140831 TATACTTG-CCCTAGAGATCTTGGATTTA
65 TATCCTTGCCCCGA-AGATCTTGGA-TTA
* * * * *
140859 TATGATGCATCAGTACCATCTAGTGGTTG-AGAAAGAAGATATGATTGGCAAAATGCAGTTGGGA
1 TATGATGCATCAATACCATCTAGTGGTTGAAGAAAGAGGATATGATTGG-GAAATGTAGTTAGGA
* *
140923 TATCCTTGCCACGGAGATCTTGGATTA
65 TATCCTTGCCCCGAAGATCTTGGATTA
* *
140950 TATGATGCATCATTACCATCTAGTGGTT-AAGAAAGAGGATATGATTGGGAAATGTGGTTAGGAT
1 TATGATGCATCAATACCATCTAGTGGTTGAAGAAAGAGGATATGATTGGGAAATGTAGTTAGGAT
*
141014 ATCCTTGCCCCGAAGATCTTAGATTA
66 ATCCTTGCCCCGAAGATCTTGGATTA
* * *
141040 TATGATGCATCAATACTATCTAGTGGTTGATGAAA-AGGGATATGATTGGGGAATGTA
1 TATGATGCATCAATACCATCTAGTGGTTGAAGAAAGA-GGATATGATTGGGAAATGTA
141097 TGGTCAGTGC
Statistics
Matches: 205, Mismatches: 28, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
90 62 0.30
91 71 0.35
92 42 0.20
93 30 0.15
ACGTcount: A:0.32, C:0.11, G:0.26, T:0.31
Consensus pattern (91 bp):
TATGATGCATCAATACCATCTAGTGGTTGAAGAAAGAGGATATGATTGGGAAATGTAGTTAGGAT
ATCCTTGCCCCGAAGATCTTGGATTA
Found at i:151072 original size:13 final size:13
Alignment explanation
Indices: 151054--151078 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
151044 ACATTTGGTC
151054 ATGTATCGATACA
1 ATGTATCGATACA
151067 ATGTATCGATAC
1 ATGTATCGATAC
151079 TTCTTGTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:151095 original size:32 final size:33
Alignment explanation
Indices: 151032--151099 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
151022 CGTTACAAGC
151032 CAATGTATCGATACATTTGGTCATGTATCGATA
1 CAATGTATCGATACATTTGGTCATGTATCGATA
*
151065 CAATGTATCGATAC-TTCTTGT-ATGTATCGATA
1 CAATGTATCGATACATT-TGGTCATGTATCGATA
151097 CAA
1 CAA
151100 ACAGTTAAGG
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
32 16 0.48
33 17 0.52
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37
Consensus pattern (33 bp):
CAATGTATCGATACATTTGGTCATGTATCGATA
Found at i:151186 original size:13 final size:13
Alignment explanation
Indices: 151168--151192 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
151158 TACAATGGTC
151168 ATGTATCGATACA
1 ATGTATCGATACA
151181 ATGTATCGATAC
1 ATGTATCGATAC
151193 TGTGCATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:158667 original size:3 final size:3
Alignment explanation
Indices: 158619--158650 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
158609 TTAGGAAATC
158619 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
158651 TAGGATAGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:161500 original size:9 final size:9
Alignment explanation
Indices: 161483--161536 Score: 51
Period size: 9 Copynumber: 6.3 Consensus size: 9
161473 TAGAAGGAGC
161483 ATAGGAGAG
1 ATAGGAGAG
*
161492 ATAGTAGAG
1 ATAGGAGAG
*
161501 ATAGGAGGG
1 ATAGGAGAG
*
161510 AT--GATAG
1 ATAGGAGAG
161517 A-AGGAGAG
1 ATAGGAGAG
*
161525 ATAGGAAAG
1 ATAGGAGAG
161534 ATA
1 ATA
161537 ATAGAGATAT
Statistics
Matches: 35, Mismatches: 7, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
7 4 0.11
8 5 0.14
9 26 0.74
ACGTcount: A:0.46, C:0.00, G:0.39, T:0.15
Consensus pattern (9 bp):
ATAGGAGAG
Found at i:161504 original size:41 final size:42
Alignment explanation
Indices: 161447--161555 Score: 157
Period size: 41 Copynumber: 2.6 Consensus size: 42
161437 TAGCCCTCAA
* *
161447 AGAGAAAGAAGAGATAGGAGGGATGATAGAAGGAG-CATAGG
1 AGAGATAGTAGAGATAGGAGGGATGATAGAAGGAGACATAGG
*
161488 AGAGATAGTAGAGATAGGAGGGATGATAGAAGGAGAGATAGG
1 AGAGATAGTAGAGATAGGAGGGATGATAGAAGGAGACATAGG
* * *
161530 AAAGATAATAGAGATATGAGGGATGA
1 AGAGATAGTAGAGATAGGAGGGATGA
161556 CAAGAGGAGG
Statistics
Matches: 61, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
41 33 0.54
42 28 0.46
ACGTcount: A:0.46, C:0.01, G:0.39, T:0.14
Consensus pattern (42 bp):
AGAGATAGTAGAGATAGGAGGGATGATAGAAGGAGACATAGG
Found at i:161564 original size:42 final size:41
Alignment explanation
Indices: 161456--161555 Score: 155
Period size: 42 Copynumber: 2.4 Consensus size: 41
161446 AAGAGAAAGA
* *
161456 AGAGATAGGAGGGATGATAGAAGGAGCATAGGAGAGATAGT
1 AGAGATAGGAGGGATGATAGAAGGAGCATAGGAAAGATAAT
*
161497 AGAGATAGGAGGGATGATAGAAGGAGAGATAGGAAAGATAAT
1 AGAGATAGGAGGGATGATAGAAGGAG-CATAGGAAAGATAAT
*
161539 AGAGATATGAGGGATGA
1 AGAGATAGGAGGGATGA
161556 CAAGAGGAGG
Statistics
Matches: 54, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
41 26 0.48
42 28 0.52
ACGTcount: A:0.44, C:0.01, G:0.40, T:0.15
Consensus pattern (41 bp):
AGAGATAGGAGGGATGATAGAAGGAGCATAGGAAAGATAAT
Found at i:161577 original size:42 final size:41
Alignment explanation
Indices: 161456--161577 Score: 124
Period size: 42 Copynumber: 2.9 Consensus size: 41
161446 AAGAGAAAGA
* * * *
161456 AGAGATAGGAGGGATGATAGAAGGAGCATAGGAG-AGATAGT
1 AGAGATAGGAGGGATGATAG-AGGAGGAGAGAAGAAGATAAT
161497 AGAGATAGGAGGGATGATAGA--AGGAGAGATAGGAAAGATAAT
1 AGAGATAGGAGGGATGATAGAGGAGGAGAGA-A-G-AAGATAAT
* *
161539 AGAGATATGAGGGATGACAAGAGGAGGAGAGAAGAAGAT
1 AGAGATAGGAGGGATGA-TAGAGGAGGAGAGAAGAAGAT
161578 GGAAGAGTGA
Statistics
Matches: 68, Mismatches: 6, Indels: 13
0.78 0.07 0.15
Matches are distributed among these distances:
38 5 0.07
39 1 0.01
40 2 0.03
41 20 0.29
42 27 0.40
43 4 0.06
44 1 0.01
45 8 0.12
ACGTcount: A:0.45, C:0.02, G:0.40, T:0.13
Consensus pattern (41 bp):
AGAGATAGGAGGGATGATAGAGGAGGAGAGAAGAAGATAAT
Found at i:167300 original size:159 final size:157
Alignment explanation
Indices: 167115--167662 Score: 462
Period size: 157 Copynumber: 3.4 Consensus size: 157
167105 TTTTAAATCG
* * * *
167115 AGAAAAATCCCCCTGAAAACATTTACGAAGTAGAAAACTCGATTTTTTGGAAATAGGAAAATTTT
1 AGAAAAATCCCCC-GAAAAAATTTACGAAGTAGAAAACTCG-TATTTTGAAAATAGGAAAATTTC
* *
167180 AAGGAAAAAATGAAAAACTCAT-AAACATGAGTGAA-TTTTTGAAAACTGATTTAATATGAAAT-
64 AAGGAAAAAATGAAAAACTCATCAAA-ATGAATGAATTTTTTCAAAA---A-TTAATATGAAATA
*
167242 A-AACAATA-ATAAATTTTAAAAATTAAAAACTA
124 ATAACAATATATAAATTTTAAAAATTAAAAACCA
* * *
167274 AGAAAAATCTACCCGAAAAAATTTACGAAGTAGAAAAATTCGTATTTTGAAAATAGGGAAATTTC
1 AGAAAAATC-CCCCGAAAAAATTTACGAAGTAG-AAAACTCGTATTTTGAAAATAGGAAAATTTC
167339 AA-GATAAAAATGAAAAACTCATCAAAATGAATGAATTTTTTTCAAAAATTAATATGAAATAAAT
64 AAGGA-AAAAATGAAAAACTCATCAAAATGAATGAA-TTTTTTCAAAAATTAATATGAAAT-AAT
*
167403 AATAATATTTGATAAATTTTAAAAATTAAAAACCA
126 AACAATA--T-ATAAATTTTAAAAATTAAAAACCA
* * * *
167438 AGAAAAATCCCCTCAAAAAAATTTA-TAGAGTAGAAAACTTTGTATTTTGAAAATAGGAGAATTT
1 AGAAAAATCCCC-CGAAAAAATTTACGA-AGTAGAAAAC-TCGTATTTTGAAAATAGGAAAATTT
* * * *
167502 CAA-G-------GAAAAACTCATGAAAATGAAT-ATTTTTTTGAAAACAAAGTTAATATGAATTA
63 CAAGGAAAAAATGAAAAACTCATCAAAATGAATGAATTTTTT--CAA-AAA-TTAATATGAAAT-
* * * *
167558 AATAATAGTATTTGATAATTTTAAAAATTAAAAACTA
123 AATAACAATATAT-A-AATTTTAAAAATTAAAAACCA
* * * * * * *
167595 AGAAAAATCCCCCCGAAAACATTTACGGAGAAAAAAATCTCGTAATTTGAAAATTGAAAGAATTT
1 AGAAAAAT-CCCCCGAAAAAATTTACGAAGTAGAAAA-CTCGTATTTTGAAAATAGGAA-AATTT
167660 CAA
63 CAA
167663 AAGAAAATCA
Statistics
Matches: 327, Mismatches: 36, Indels: 53
0.79 0.09 0.13
Matches are distributed among these distances:
154 6 0.02
155 2 0.01
156 24 0.07
157 75 0.23
158 37 0.11
159 74 0.23
160 19 0.06
161 9 0.03
163 7 0.02
164 74 0.23
ACGTcount: A:0.51, C:0.09, G:0.11, T:0.29
Consensus pattern (157 bp):
AGAAAAATCCCCCGAAAAAATTTACGAAGTAGAAAACTCGTATTTTGAAAATAGGAAAATTTCAA
GGAAAAAATGAAAAACTCATCAAAATGAATGAATTTTTTCAAAAATTAATATGAAATAATAACAA
TATATAAATTTTAAAAATTAAAAACCA
Found at i:167644 original size:157 final size:156
Alignment explanation
Indices: 167250--167669 Score: 465
Period size: 164 Copynumber: 2.6 Consensus size: 156
167240 ATAAACAATA
** * *
167250 ATAAATTTTAAAAATTAAAAACTAAGAAAAATCTACCCGAAAAAATTTACGAAGTAGAAAAAT-T
1 ATAAATTTTAAAAATTAAAAACTAAGAAAAATCCCCCCGAAAAAATTTACGGAG-AAAAAAATCT
167314 CGTATTTTGAAAATAGG-GAAATTTCAAGATAAAAATGAAAAACTCATCAAAATGAATGAATTTT
65 CGTATTTTGAAAATAGGAG-AATTTCAAG------A-GAAAAACTCATCAAAATGAAT-AATTTT
*
167378 TTTCAAAAATTAATATGAAATAAATAATAATATTTG
121 TTTAAAAAATTAATATGAAATAAATAATAATATTTG
* * * ** * *
167414 ATAAATTTTAAAAATTAAAAACCAAGAAAAATCCCCTCAAAAAAATTTATAGAGTAGAAAA-CTT
1 ATAAATTTTAAAAATTAAAAACTAAGAAAAATCCCCCCGAAAAAATTTACGGAGAAAAAAATC-T
* *
167478 TGTATTTTGAAAATAGGAGAATTTCAAG-GAAAAACTCATGAAAATGAAT-ATTTTTTTGAAAAC
65 CGTATTTTGAAAATAGGAGAATTTCAAGAGAAAAACTCATCAAAATGAATAATTTTTTT--AAA-
* *
167541 AAAGTTAATATGAATTAAATAATAGTATTTG
127 AAA-TTAATATGAAATAAATAATAATATTTG
*
167572 AT-AATTTTAAAAATTAAAAACTAAGAAAAATCCCCCCGAAAACATTTACGGAGAAAAAAATCTC
1 ATAAATTTTAAAAATTAAAAACTAAGAAAAATCCCCCCGAAAAAATTTACGGAGAAAAAAATCTC
* * * *
167636 GTAATTTGAAAATTGAAAGAATTTCAAAAGAAAA
66 GTATTTTGAAAATAG-GAGAATTTCAAGAGAAAA
167670 TCAATAACCC
Statistics
Matches: 217, Mismatches: 29, Indels: 25
0.80 0.11 0.09
Matches are distributed among these distances:
154 8 0.04
156 22 0.10
157 67 0.31
158 38 0.18
159 5 0.02
163 4 0.02
164 72 0.33
165 1 0.00
ACGTcount: A:0.52, C:0.09, G:0.10, T:0.29
Consensus pattern (156 bp):
ATAAATTTTAAAAATTAAAAACTAAGAAAAATCCCCCCGAAAAAATTTACGGAGAAAAAAATCTC
GTATTTTGAAAATAGGAGAATTTCAAGAGAAAAACTCATCAAAATGAATAATTTTTTTAAAAAAT
TAATATGAAATAAATAATAATATTTG
Found at i:168912 original size:83 final size:84
Alignment explanation
Indices: 168696--169338 Score: 380
Period size: 83 Copynumber: 7.6 Consensus size: 84
168686 ACCAAAAAAG
* * * *
168696 GTAAGGGGTTTACC-GAGGACAAAGCCAACATGTAAACAAGGAGATGAAGGTTGACCGAGGACTG
1 GTAAGGGGTTTACCAG-GGACTAAGCCAACAGGTAAACAA-AAGATGAAGGTTGACCAAGGACTG
* *
168760 AGTTGACAGGTCACCATAGGT
64 AGCTGATAGGTCACCATAGGT
* * *
168781 GTAAGGGATTTACCAGGGACTAAGCCAACAGGTAAATGAAAA-ATGAAGGTTGACCAAAGACTGA
1 GTAAGGGGTTTACCAGGGACTAAGCCAACAGGTAAA-CAAAAGATGAAGGTTGACCAAGGACTGA
*
168845 GCTGATAGGTCACCAAAGG-
65 GCTGATAGGTCACCATAGGT
* * * * * *
168864 ATAAGGGGTTTACTAGGGACTGAGTCGACAGGTAAACAAAAGAAGAAGGTTGACCAAGGACTGAG
1 GTAAGGGGTTTACCAGGGACTAAGCCAACAGGTAAACAAAAGATGAAGGTTGACCAAGGACTGAG
*
168929 CTCATAGGTCACCATAGGT
66 CTGATAGGTCACCATAGGT
** * * * * * ** *
168948 GTAAGGGGTTTA-TTGGGTCTAAACCGATAGGTAAACAAATGATGAA-GTTGA-CTGGAGACTAA
1 GTAAGGGGTTTACCAGGGACTAAGCCAACAGGTAAACAAAAGATGAAGGTTGACCAAG-GACTGA
* * *
169010 ACTAATAGGTCACCATAGGG
65 GCTGATAGGTCACCATAGGT
** * ** *** * * * * *
169030 GTAATGGTGCCTT-CCAAGGACTGGGTTGACAGATAAACAATGAGATGGAGGTT-AACTAGAGAC
1 GTAA-GG-GGTTTACCAGGGACTAAGCCAACAGGTAAACAA-AAGATGAAGGTTGACCAAG-GAC
* * * *
169093 TAAGCTAACAGGTCACCATAAAG-
62 TGAGCTGATAGGTCACCAT-AGGT
* * * * * * * *
169116 GTAATGGGTTTACTAGTGACTAAGGCAATAGGTAAACAATGAGATGAAGGTTAACC-AGAGACTA
1 GTAAGGGGTTTACCAGGGACTAAGCCAACAGGTAAACAA-AAGATGAAGGTTGACCAAG-GACTG
* *
169180 AGCTAATAGGTCACCATAGGG
64 AGCTGATAGGTCACCATAGGT
* * * * * * *
169201 GTAATGGTGTCTACC-GAGGACTAAGCC--GATGTAAACAATGAGATAAAGGTTGACCAAAGACT
1 GTAA-GGGGTTTACCAG-GGACTAAGCCAACAGGTAAACAA-AAGATGAAGGTTGACCAAGGACT
* *
169263 GAGCTGACAGCTCACCATAGG-
63 GAGCTGATAGGTCACCATAGGT
* * * * * *
169284 GTAATGGTGTCTACC-GAGGACTGAGCCGACAAGTAAACAAAAAGATAAAGGTTGA
1 GTAA-GGGGTTTACCAG-GGACTAAGCCAACAGGTAAAC-AAAAGATGAAGGTTGA
169339 TTGGAGATTA
Statistics
Matches: 445, Mismatches: 92, Indels: 42
0.77 0.16 0.07
Matches are distributed among these distances:
81 2 0.00
82 35 0.08
83 121 0.27
84 115 0.26
85 118 0.27
86 52 0.12
87 2 0.00
ACGTcount: A:0.37, C:0.15, G:0.28, T:0.20
Consensus pattern (84 bp):
GTAAGGGGTTTACCAGGGACTAAGCCAACAGGTAAACAAAAGATGAAGGTTGACCAAGGACTGAG
CTGATAGGTCACCATAGGT
Found at i:169322 original size:169 final size:171
Alignment explanation
Indices: 169002--169323 Score: 373
Period size: 169 Copynumber: 1.9 Consensus size: 171
168992 AAGTTGACTG
* ** **
169002 GAGACTAAACTAATAGGTCACCATAGGGGTAATGGTGCCTTCCAAGGACTGGGTTGACAGATAAA
1 GAGACTAAACTAATAGGTCACCATAGGGGTAATGGTGCCTACCAAGGACTAAGCCGACAGATAAA
** * * * * *
169067 CAATGAGATGGAGGTTAACTAGAGACTAAGCTAACAGGTCACCATAAAGGTAATGGGTTTACTAG
66 CAATGAGATAAAGGTTAACCAAAGACTAAGCTAACAGCTCACCATAAAGGTAATGGGTCTACGAG
* * *
169132 TGACTAAGGCAATAGGTAAACAATGAGATGAAGGTTAACCA
131 TGACTAAGCCAACAAGTAAACAATGAGATGAAGGTTAACCA
* * * *
169173 GAGACTAAGCTAATAGGTCACCATAGGGGTAATGGTGTCTACCGAGGACTAAGCCGA-TG-TAAA
1 GAGACTAAACTAATAGGTCACCATAGGGGTAATGGTGCCTACCAAGGACTAAGCCGACAGATAAA
* * * *
169236 CAATGAGATAAAGGTTGACCAAAGACTGAGCTGACAGCTCACCAT-AGGGTAATGGTGTCTACCG
66 CAATGAGATAAAGGTTAACCAAAGACTAAGCTAACAGCTCACCATAAAGGTAATGG-GTCTA-CG
* *
169300 AG-GACTGAGCCGACAAGTAAACAA
129 AGTGACTAAGCCAACAAGTAAACAA
169324 AAAGATAAAG
Statistics
Matches: 124, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
168 9 0.07
169 62 0.50
170 4 0.03
171 49 0.40
ACGTcount: A:0.36, C:0.17, G:0.27, T:0.20
Consensus pattern (171 bp):
GAGACTAAACTAATAGGTCACCATAGGGGTAATGGTGCCTACCAAGGACTAAGCCGACAGATAAA
CAATGAGATAAAGGTTAACCAAAGACTAAGCTAACAGCTCACCATAAAGGTAATGGGTCTACGAG
TGACTAAGCCAACAAGTAAACAATGAGATGAAGGTTAACCA
Done.