Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold269
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1389591
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 499 characters in sequence are not A, C, G, or T
File 5 of 7
Found at i:706403 original size:14 final size:14
Alignment explanation
Indices: 706384--706419 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
706374 ACCATGAGCC
706384 GAACCATTTTCCAT
1 GAACCATTTTCCAT
*
706398 GAACCATTTTTCAT
1 GAACCATTTTCCAT
706412 GAACCATT
1 GAACCATT
706420 CACCAAGAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.31, C:0.25, G:0.08, T:0.36
Consensus pattern (14 bp):
GAACCATTTTCCAT
Found at i:706867 original size:31 final size:31
Alignment explanation
Indices: 706832--707863 Score: 1016
Period size: 31 Copynumber: 32.7 Consensus size: 31
706822 TCTCTCTTCC
*
706832 CAAAGTCCATGACTCAGTGGCATCTTTTCTT
1 CAAAGTCCACGACTCAGTGGCATCTTTTCTT
*
706863 CAAAGTCCACGACTCAGTGGCAATTTTTTCTT
1 CAAAGTCCACGACTCAGTGGC-ATCTTTTCTT
*
706895 CAAAGTCCACGACTCAGTGGCAATCTCTTC-T
1 CAAAGTCCACGACTCAGTGGC-ATCTTTTCTT
* * * *
706926 CAAAGTTCATGACTCAGTGGCATCTCTTAC-C
1 CAAAGTCCACGACTCAGTGGCATCT-TTTCTT
*
706957 CAAAGTCCATGACTCAGTGGCATCTTTTCTT
1 CAAAGTCCACGACTCAGTGGCATCTTTTCTT
* *
706988 CAAAGTCCATGACTCAGTGGCAATCTCTTC-T
1 CAAAGTCCACGACTCAGTGGC-ATCTTTTCTT
* * * *
707019 CAAAATCCATGACTCAGTGGCATCTCTTC-C
1 CAAAGTCCACGACTCAGTGGCATCTTTTCTT
* *
707049 CAAAGTTCACGACTAAGTGGCATCTTTTCTT
1 CAAAGTCCACGACTCAGTGGCATCTTTTCTT
* * * *
707080 CAAATTCCACGACTTAATGGCAATCTCTTC-T
1 CAAAGTCCACGACTCAGTGGC-ATCTTTTCTT
* *
707111 CAAAGTCCACGACTCAGTGTCATCTCTTTC-C
1 CAAAGTCCACGACTCAGTGGCATCT-TTTCTT
* *
707142 CAAAGTCCACGACTTACTGGCATCTTTTCTT
1 CAAAGTCCACGACTCAGTGGCATCTTTTCTT
* *
707173 CAAAGTCCGCGACTCAGTGGCAATCTCTTC-T
1 CAAAGTCCACGACTCAGTGGC-ATCTTTTCTT
* * *
707204 CAAAGTCCACGACTTAGTGGCATCTCTTC-C
1 CAAAGTCCACGACTCAGTGGCATCTTTTCTT
* * *
707234 CAAAGTCTATGACTCAATGGCATCTTTTCTT
1 CAAAGTCCACGACTCAGTGGCATCTTTTCTT
* * *
707265 CAAAGTTCATGACTCAATGGCAATCTTTTCTT
1 CAAAGTCCACGACTCAGTGGC-ATCTTTTCTT
*
707297 CAAAGTCCACGACTCAGTGGCAATCTCTT-TT
1 CAAAGTCCACGACTCAGTGGC-ATCTTTTCTT
* * *
707328 CAAACTCCATGACTTAGTGGCATCTCTTTC--
1 CAAAGTCCACGACTCAGTGGCATCT-TTTCTT
* * *
707358 CTAAGTCCATGATTCAGTGGCATCCTTTTCTT
1 CAAAGTCCACGACTCAGTGGCAT-CTTTTCTT
* * *
707390 CCAAGTCCACGACTTAATGGCATCTTTTTTCTT
1 CAAAGTCCACGACTCAGTGGCATC--TTTTCTT
*
707423 TAAAGTCCACGACTCAGTGGCATCTTTTCTT
1 CAAAGTCCACGACTCAGTGGCATCTTTTCTT
707454 CAAAGTCCACGACTCAGTGGCAATCTTTTCTT
1 CAAAGTCCACGACTCAGTGGC-ATCTTTTCTT
* *
707486 CAAAGTCCACGACTCAGTGGAAATCTCTTC-T
1 CAAAGTCCACGACTCAGTGG-CATCTTTTCTT
*
707517 CAAAGTCCAAGACTCAGTGGCATCTCTTTC--
1 CAAAGTCCACGACTCAGTGGCATCT-TTTCTT
* *
707547 CTAAGTCCAAGACTCAGTGGCATCCTTTTCTT
1 CAAAGTCCACGACTCAGTGGCAT-CTTTTCTT
*
707579 CTAAGTCCACGACTCAGTGGCATCTTTTTTTCTT
1 CAAAGTCCACGACTCAGTGGCATC---TTTTCTT
* *
707613 CAAAGTCTACGACTCAATGGCATCTTTTCTT
1 CAAAGTCCACGACTCAGTGGCATCTTTTCTT
* * *
707644 CAAAGTCCACGACTCAATAGCATCTTTTTTT
1 CAAAGTCCACGACTCAGTGGCATCTTTTCTT
*
707675 CAAAGTCCACGACTCAGTGGCAATCTCTTC-T
1 CAAAGTCCACGACTCAGTGGC-ATCTTTTCTT
* *
707706 CCAAGTCCACAACTCAGTGGCATCTTTTTCTT
1 CAAAGTCCACGACTCAGTGGCATC-TTTTCTT
** *
707738 CCCAAAGTCCACGACTTTGTGGCACTTTTTTCTTTT
1 --CAAAGTCCACGACTCAGTGGCA-TCTTTTC--TT
*
707774 CATAGTCCACGACTTC-GTGGCATCTTTTTCTT
1 CAAAGTCCACGAC-TCAGTGGCATC-TTTTCTT
* * * *
707806 CCCAAAGTCCATGACTCTGTGGCACCTTTTTATTTT
1 --CAAAGTCCACGACTCAGTGGCA--TCTTT-TCTT
* *
707842 CAAAGTCCACAACTCTGTGGCA
1 CAAAGTCCACGACTCAGTGGCA
707864 CCCTTTTAAG
Statistics
Matches: 851, Mismatches: 107, Indels: 83
0.82 0.10 0.08
Matches are distributed among these distances:
30 139 0.16
31 381 0.45
32 179 0.21
33 30 0.04
34 111 0.13
35 5 0.01
36 6 0.01
ACGTcount: A:0.24, C:0.28, G:0.15, T:0.33
Consensus pattern (31 bp):
CAAAGTCCACGACTCAGTGGCATCTTTTCTT
Found at i:707864 original size:34 final size:32
Alignment explanation
Indices: 707708--708255 Score: 420
Period size: 34 Copynumber: 16.8 Consensus size: 32
707698 TCTCTTCTCC
* * **
707708 AAGTCCACAACTCAGTGGCATCTTTTTCTTCCCA
1 AAGTCCACAACTCCGTGGCACCTTTTTCTT--TT
* ** *
707742 AAGTCCACGACTTTGTGGCACTTTTTTCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTT
* * * **
707774 CATAGTCCACGACTTCGTGGCATCTTTTTCTTCCCA
1 -A-AGTCCACAACTCCGTGGCACCTTTTTCTT--TT
** * *
707810 AAGTCCATGACTCTGTGGCACCTTTTTATTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTT
*
707842 CAAAGTCCACAACTCTGTGGCACC-----CTTTT
1 --AAGTCCACAACTCCGTGGCACCTTTTTCTTTT
707871 AAGTCCACAACTCCGTGGCACCCTTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCA-CCTTTTTC-TTTT
* * *
707905 AAAGCCCACAACACCGTAGCACCTTTTTCTTTTT
1 -AAGTCCACAACTCCGTGGCACCTTTTTC-TTTT
* *
707939 ACAGCCCACAACTCCATGGCACTCTTTTTCCTTTT
1 A-AGTCCACAACTCCGTGGCAC-CTTTTT-CTTTT
707974 AAGTCCACAACTCCGTGGCA-C--TTT-TTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTT
*
708002 -AGTCCACAACTCCGTGGCATCTTTTTCCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTT-CTTTT
* *
708034 AAGTCCACAACTCCATGGCACCTTGTTCCTTTT
1 AAGTCCACAACTCCGTGGCACCTT-TTTCTTTT
* *
708067 AAGCCCACAACTCCGTGGCA-CTATTTCTTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTC-TTTT
* * *
708099 AAGTCCACAAGTCCATGGCATCTTTTTCCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTT-CTTTT
* *
708132 AAGTCCACAACTCCGCGTCACC-TTTTCTTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTC-TTTT
* *
708164 AAGTCCACGACTCCGTGGCAACC-TTTCCTATTT
1 AAGTCCACAACTCCGTGGC-ACCTTTTTCT-TTT
* * * *
708197 AAGCCCACACCTCCGTGGCATTCCTTTTACTTAT
1 AAGTCCACAACTCCGTGGCA--CCTTTTTCTTTT
**
708231 AAGTCCACAACTCTATGGCACCTTT
1 AAGTCCACAACTCCGTGGCACCTTT
708256 AAGTCCAATA
Statistics
Matches: 421, Mismatches: 60, Indels: 68
0.77 0.11 0.12
Matches are distributed among these distances:
27 38 0.09
28 7 0.02
29 4 0.01
30 6 0.01
31 4 0.01
32 59 0.14
33 99 0.24
34 169 0.40
35 34 0.08
36 1 0.00
ACGTcount: A:0.21, C:0.31, G:0.12, T:0.36
Consensus pattern (32 bp):
AAGTCCACAACTCCGTGGCACCTTTTTCTTTT
Found at i:707878 original size:27 final size:27
Alignment explanation
Indices: 707844--707897 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
707834 TTTATTTTCA
*
707844 AAGTCCACAACTCTGTGGCACCCTTTT
1 AAGTCCACAACTCCGTGGCACCCTTTT
707871 AAGTCCACAACTCCGTGGCACCCTTTT
1 AAGTCCACAACTCCGTGGCACCCTTTT
707898 TCTTTTTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.22, C:0.35, G:0.15, T:0.28
Consensus pattern (27 bp):
AAGTCCACAACTCCGTGGCACCCTTTT
Found at i:707899 original size:130 final size:127
Alignment explanation
Indices: 707742--708189 Score: 325
Period size: 130 Copynumber: 3.4 Consensus size: 127
707732 TTTCTTCCCA
* ** * * ** * *
707742 AAGTCCACGACTTTGTGGCACTTTTTTCTTTTCATAGTCCACGACTTCGTGGCATCTTTTTCTTC
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTT-A-AGTCCACAACACCGTAGCACCTTTTTCTTC
* ** ** *
707807 CCAAAGTCCATGACTCTGTGGCAC-CTTTTT-ATTTTCAAAGTCCACAACTCTGTGGCACCCTTT
64 CCAAAGCCCACAACTCCATGGCACTCTTTTTCATTTT--AAGTCCACAACTCCGTGGCACCCTTT
707870 T
127 T
*
707871 AAGTCCACAACTCCGTGGCACCCTTTTTCTTTTTAAAGCCCACAACACCGTAGCACCTTTTTCTT
1 AAGTCCACAACTCCGTGGCA-CCTTTTTC-TTTT-AAGTCCACAACACCGTAGCACCTTTTTCTT
*** * * **
707936 TTTACAGCCCACAACTCCATGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACTTTTTT
63 CCCAAAGCCCACAACTCCATGGCACTCTTTTTCATTTTAAGTCCACAACTCCGTGGCACCCTTTT
* * * * * *
708001 TAGTCCACAACTCCGTGGCATCTTTTTCCTTTTAAGTCCACAACTCCATGGCACCTTGTTCCTT-
1 AAGTCCACAACTCCGTGGCACCTTTTT-CTTTTAAGTCCACAACACCGTAGCACCTT-TTTCTTC
** * * * * *
708065 -TTAAGCCCACAACTCCGTGGCA--CTATTTCTTTTTAAGTCCACAAGTCCATGGCATCTTTTTC
64 CCAAAGCCCACAACTCCATGGCACTCTTTTTCATTTTAAGTCCACAACTCCGTGGCA-C-----C
708127 CTTTT
123 CTTTT
* * * * *
708132 AAGTCCACAACTCCGCGTCACC-TTTTCTTTTTAAGTCCACGACTCCGTGGCAACCTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTC-TTTTAAGTCCACAACACCGTAGC-ACCTTT
708190 CCTATTTAAG
Statistics
Matches: 259, Mismatches: 46, Indels: 27
0.78 0.14 0.08
Matches are distributed among these distances:
125 28 0.11
126 1 0.00
127 19 0.07
128 20 0.08
129 33 0.13
130 116 0.45
131 38 0.15
132 4 0.02
ACGTcount: A:0.20, C:0.31, G:0.13, T:0.36
Consensus pattern (127 bp):
AAGTCCACAACTCCGTGGCACCTTTTTCTTTTAAGTCCACAACACCGTAGCACCTTTTTCTTCCC
AAAGCCCACAACTCCATGGCACTCTTTTTCATTTTAAGTCCACAACTCCGTGGCACCCTTTT
Found at i:707997 original size:25 final size:26
Alignment explanation
Indices: 707969--708026 Score: 89
Period size: 27 Copynumber: 2.2 Consensus size: 26
707959 ACTCTTTTTC
707969 CTTTTAAGTCCACAACTCCGTGGCACT
1 CTTTTAAGTCCACAACTCCGTGGCA-T
* *
707996 TTTTTTAGTCCACAACTCCGTGGCAT
1 CTTTTAAGTCCACAACTCCGTGGCAT
708022 CTTTT
1 CTTTT
708027 TCCTTTTAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 5 0.18
27 23 0.82
ACGTcount: A:0.19, C:0.29, G:0.14, T:0.38
Consensus pattern (26 bp):
CTTTTAAGTCCACAACTCCGTGGCAT
Found at i:708005 original size:27 final size:30
Alignment explanation
Indices: 707407--708243 Score: 313
Period size: 34 Copynumber: 25.9 Consensus size: 30
707397 CACGACTTAA
* *
707407 TGGCATCTTTTTTCTTTAAAGTCCACGACTCAG
1 TGGCATC-TTTTT-TTT-AAGTCCACAACTCCG
** * *
707440 TGGCATCTTTTCTTCAAAGTCCACGACTCAG
1 TGGCATCTTTT-TTTTAAGTCCACAACTCCG
** * *
707471 TGGCAATCTTTTCTTCAAAGTCCACGACTCAG
1 TGGC-ATCTTTT-TTTTAAGTCCACAACTCCG
* * * ** *
707503 TGGAAATCTCTTCTCAAAGTCCA-AGACTCAG
1 TGG-CATCTTTTTTTTAAGTCCACA-ACTCCG
* ** *
707534 TGGCATCTCTTTCCTAAGTCCA-AGACTCAG
1 TGGCATCTTTTTTTTAAGTCCACA-ACTCCG
* * *
707564 TGGCATCCTTTTCTTCTAAGTCCACGACTCAG
1 TGGCAT-CTTTT-TTTTAAGTCCACAACTCCG
* * **
707596 TGGCATCTTTTTTTCTTCAAAGTCTACGACTCAA
1 TGGCATC-TTTTTT-TT--AAGTCCACAACTCCG
** * **
707630 TGGCATCTTTTCTTCAAAGTCCACGACTCAA
1 TGGCATCTTTT-TTTTAAGTCCACAACTCCG
* * * *
707661 TAGCATCTTTTTTTCAAAGTCCACGACTCAG
1 TGGCATCTTTTTTT-TAAGTCCACAACTCCG
* * ** *
707692 TGGCAATCTCTTCTCCAAGTCCACAACTCAG
1 TGGC-ATCTTTTTTTTAAGTCCACAACTCCG
* * **
707723 TGGCATCTTTTTCTTCCCAAAGTCCACGACTTTG
1 TGGCATCTTTTT-TT---TAAGTCCACAACTCCG
* * *
707757 TGGCACTTTTTTCTTTTCATAGTCCACGACTTCG
1 TGGCA-TCTTTT-TTTT-A-AGTCCACAACTCCG
* ** *
707791 TGGCATCTTTTTCTTCCCAAAGTCCATGACTCTG
1 TGGCATCTTTTT-TT---TAAGTCCACAACTCCG
* *
707825 TGGCACCTTTTTATTTTCAAAGTCCACAACTCTG
1 TGGCATC-TTTT-TTTT--AAGTCCACAACTCCG
**
707859 TGGCA-C--CCTTTTAAGTCCACAACTCCG
1 TGGCATCTTTTTTTTAAGTCCACAACTCCG
* * *
707886 TGGCACCCTTTTTCTTTTTAAAGCCCACAACACCG
1 TGGCA---TCTTT-TTTTT-AAGTCCACAACTCCG
* * * *
707921 TAGCACCTTTTTCTTTTTACAGCCCACAACTCCA
1 TGGCA--TCTTT-TTTTTA-AGTCCACAACTCCG
707955 TGGCACTCTTTTTCCTTTTAAGTCCACAACTCCG
1 TGGCA-TC-TTTT--TTTTAAGTCCACAACTCCG
707989 TGGCA-C-TTTTTTT-AGTCCACAACTCCG
1 TGGCATCTTTTTTTTAAGTCCACAACTCCG
*
708016 TGGCATCTTTTTCCTTTTAAGTCCACAACTCCA
1 TGGCATC-TTTT--TTTTAAGTCCACAACTCCG
* *
708049 TGGCACCTTGTTCCTTTTAAGCCCACAACTCCG
1 TGGCATCTT-TT--TTTTAAGTCCACAACTCCG
* * *
708082 TGGCACTATTTCTTTTTAAGTCCACAAGTCCA
1 TGGCA-TCTTT-TTTTTAAGTCCACAACTCCG
708114 TGGCATCTTTTTCCTTTTAAGTCCACAACTCCG
1 TGGCATC-TTTT--TTTTAAGTCCACAACTCCG
* * * *
708147 CGTCACCTTTTCTTTTTAAGTCCACGACTCCG
1 TGGCATC-TTT-TTTTTAAGTCCACAACTCCG
* * * *
708179 TGGCAACCTTTCCTATTTAAGCCCACACCTCCG
1 TGGC-ATCTTT--TTTTTAAGTCCACAACTCCG
*
708212 TGGCATTCCTTTTACTTATAAGTCCACAACTC
1 TGGCA-T-CTTTT--TTTTAAGTCCACAACTC
708244 TATGGCACCT
Statistics
Matches: 654, Mismatches: 89, Indels: 121
0.76 0.10 0.14
Matches are distributed among these distances:
27 38 0.06
28 5 0.01
29 4 0.01
30 43 0.07
31 108 0.17
32 132 0.20
33 120 0.18
34 166 0.25
35 36 0.06
36 2 0.00
ACGTcount: A:0.22, C:0.30, G:0.13, T:0.35
Consensus pattern (30 bp):
TGGCATCTTTTTTTTAAGTCCACAACTCCG
Found at i:708107 original size:65 final size:65
Alignment explanation
Indices: 707819--708255 Score: 407
Period size: 65 Copynumber: 6.8 Consensus size: 65
707809 AAAGTCCATG
* * * ** *
707819 ACTCTGTGGCACCTTTTTATTTTCAAAGTCCACAACTCTGTGGCA-C----CCTTTTAAGTCCAC
1 ACTCCGTGGCACCTTTTTCTTTT-TAAGTCCACAACTCCATGGCACCTTTTCCTTTTAAGCCCAC
707879 A
65 A
* * * * *
707880 ACTCCGTGGCACCCTTTTTCTTTTTAAAGCCCACAACACCGTAGCACCTTTTTCTTTTTACAGCC
1 ACTCCGTGGCA-CCTTTTTCTTTTT-AAGTCCACAACTCCATGGCACC-TTTTCCTTTTA-AGCC
707945 CACA
62 CACA
* * * *
707949 ACTCCATGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCA-C-TTT--TTTT-AGTCCAC
1 ACTCCGTGGCAC-CTTTTTCTTTTTAAGTCCACAACTCCATGGCACCTTTTCCTTTTAAGCCCAC
708009 A
65 A
* *
708010 ACTCCGTGGCATCTTTTTCCTTTTAAGTCCACAACTCCATGGCACCTTGTTCCTTTTAAGCCCAC
1 ACTCCGTGGCACCTTTTTCTTTTTAAGTCCACAACTCCATGGCACCTT-TTCCTTTTAAGCCCAC
708075 A
65 A
* * * *
708076 ACTCCGTGGCA-CTATTTCTTTTTAAGTCCACAAGTCCATGGCATCTTTTTCCTTTTAAGTCCAC
1 ACTCCGTGGCACCTTTTTCTTTTTAAGTCCACAACTCCATGGCA-CCTTTTCCTTTTAAGCCCAC
708140 A
65 A
* * * *
708141 ACTCCGCGTCACC-TTTTCTTTTTAAGTCCACGACTCCGTGGCAACC-TTTCCTATTTAAGCCCA
1 ACTCCGTGGCACCTTTTTCTTTTTAAGTCCACAACTCCATGGC-ACCTTTTCCT-TTTAAGCCCA
708204 CA
64 CA
* * * *
708206 CCTCCGTGGCATTCCTTTTAC-TTATAAGTCCACAACTCTATGGCACCTTT
1 ACTCCGTGGCA--CCTTTTTCTTTTTAAGTCCACAACTCCATGGCACCTTT
708256 AAGTCCAATA
Statistics
Matches: 312, Mismatches: 40, Indels: 42
0.79 0.10 0.11
Matches are distributed among these distances:
60 31 0.10
61 28 0.09
62 28 0.09
63 7 0.02
64 6 0.02
65 106 0.34
66 26 0.08
67 24 0.08
68 28 0.09
69 28 0.09
ACGTcount: A:0.21, C:0.32, G:0.12, T:0.35
Consensus pattern (65 bp):
ACTCCGTGGCACCTTTTTCTTTTTAAGTCCACAACTCCATGGCACCTTTTCCTTTTAAGCCCACA
Found at i:708294 original size:43 final size:43
Alignment explanation
Indices: 708246--708473 Score: 212
Period size: 43 Copynumber: 5.1 Consensus size: 43
708236 CACAACTCTA
* * *
708246 TGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATTAGCATAT
1 TGGCACCTTTAAGACCAATATCGCTGGCCTTGAATCAGCACAT
*
708289 TGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACAT
1 TGGCA-C----CTTTAAGACCAATATCGCTGGCCTTGAATCAGCACAT
* * *
708337 TGGCA-C---AAGTCCAATATCGTTGGCCTTGAATCAGCATAT
1 TGGCACCTTTAAGACCAATATCGCTGGCCTTGAATCAGCACAT
* * * * *
708376 TGACACTTTTATCTTTAGGACCAATGTTGCTAGCCTTGAATCAGCACAT
1 TGGCAC------CTTTAAGACCAATATCGCTGGCCTTGAATCAGCACAT
*
708425 TGGCACCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACAT
1 TGGCACCTTTAAGACCAATATCGCTGGCCTTGAATCAGCACAT
708468 TGGCAC
1 TGGCAC
708474 AAGCCTAATA
Statistics
Matches: 150, Mismatches: 20, Indels: 30
0.75 0.10 0.15
Matches are distributed among these distances:
39 33 0.22
42 1 0.01
43 45 0.30
44 1 0.01
46 1 0.01
48 38 0.25
49 31 0.21
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (43 bp):
TGGCACCTTTAAGACCAATATCGCTGGCCTTGAATCAGCACAT
Found at i:708362 original size:39 final size:40
Alignment explanation
Indices: 708303--708513 Score: 176
Period size: 39 Copynumber: 5.0 Consensus size: 40
708293 ACCTTGTCTT
708303 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC
* * * * *
708343 -AAGTCCAATATCGTTGGCCTTGAATCAGCATATTGACAC
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC
* *
708382 TTTTATCTTTAGGACCAATGTTGCTAGCCTTGAATCAGCACATTGGCACC
1 ---TA-----A-GACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-C
708432 TTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC
1 --TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC
* * * * *
708474 -AAG-CCTAATATCGCTGGCCTTAAATTAGCATATTAGCAC
1 TAAGACC-AATGTCGCTGGCCTTGAATCAGCACATTGGCAC
708513 T
1 T
708514 TCCATCTTTA
Statistics
Matches: 139, Mismatches: 19, Indels: 26
0.76 0.10 0.14
Matches are distributed among these distances:
38 2 0.01
39 65 0.47
42 1 0.01
43 35 0.25
44 1 0.01
48 1 0.01
49 33 0.24
50 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (40 bp):
TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC
Found at i:708425 original size:88 final size:89
Alignment explanation
Indices: 708246--708469 Score: 290
Period size: 88 Copynumber: 2.5 Consensus size: 89
708236 CACAACTCTA
* * *
708246 TGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATTAGCATATTGGCACCTTGTCTTTAAGACCA
1 TGGCACC--TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGACACCTTATCTTTAAGACCA
*
708311 ATGTCGCTGGCCTTGAATCAGCACAT
64 ATGTCGCTAGCCTTGAATCAGCACAT
* * *
708337 TGGCA-C-AAGTCCAATATCGTTGGCCTTGAATCAGCATATTGACACTTTTATCTTTAGGACCAA
1 TGGCACCTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGACAC-CTTATCTTTAAGACCAA
*
708400 TGTTGCTAGCCTTGAATCAGCACAT
65 TGTCGCTAGCCTTGAATCAGCACAT
* * *
708425 TGGCACCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTG
1 TGGCACC--TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTG
708470 GCACAAGCCT
Statistics
Matches: 116, Mismatches: 12, Indels: 9
0.85 0.09 0.07
Matches are distributed among these distances:
87 36 0.31
88 42 0.36
89 1 0.01
90 1 0.01
91 5 0.04
92 31 0.27
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (89 bp):
TGGCACCTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGACACCTTATCTTTAAGACCAAT
GTCGCTAGCCTTGAATCAGCACAT
Found at i:708492 original size:131 final size:131
Alignment explanation
Indices: 708300--708564 Score: 381
Period size: 131 Copynumber: 2.0 Consensus size: 131
708290 GGCACCTTGT
* *
708300 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACAAGTCCAATATCGTTGGCCTTG
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACAAGTCCAATATCGCTGGCCTTA
** ** *
708365 AATCAGCATATT-GACACTTTTATCTTTAGGACCAATGTTGCTAGCCTTGAATCAGCACATTGGC
66 AATCAGCATATTAG-CACTTCCATCTTTAAAACCAATGTTGCTAGCCTGGAATCAGCACATTGGC
708429 AC
130 AC
708431 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACAAG-CCTAATATCGCTGGCCTT
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACAAGTCC-AATATCGCTGGCCTT
* * * * * *
708495 AAATTAGCATATTAGCACTTCCATCTTTAAAATCGATGTTGTTGGCCTGGAATCATCACATTGGC
65 AAATCAGCATATTAGCACTTCCATCTTTAAAACCAATGTTGCTAGCCTGGAATCAGCACATTGGC
708560 AC
130 AC
708562 CTT
1 CTT
708565 AACCATCTTT
Statistics
Matches: 119, Mismatches: 13, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
130 2 0.02
131 116 0.97
132 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (131 bp):
CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACAAGTCCAATATCGCTGGCCTTA
AATCAGCATATTAGCACTTCCATCTTTAAAACCAATGTTGCTAGCCTGGAATCAGCACATTGGCA
C
Found at i:709344 original size:15 final size:15
Alignment explanation
Indices: 709324--709353 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
709314 AATTCATGAC
709324 TTTTTAGAATATCAT
1 TTTTTAGAATATCAT
709339 TTTTTAGAATATCAT
1 TTTTTAGAATATCAT
709354 GACTTTTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.53
Consensus pattern (15 bp):
TTTTTAGAATATCAT
Found at i:709579 original size:13 final size:13
Alignment explanation
Indices: 709561--709586 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
709551 ACATAAGTGT
709561 TGTATCGATACAA
1 TGTATCGATACAA
709574 TGTATCGATACAA
1 TGTATCGATACAA
709587 AGTTGCCCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:709653 original size:13 final size:13
Alignment explanation
Indices: 709635--709659 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
709625 CTACTCAATG
709635 TATCGATACATTA
1 TATCGATACATTA
709648 TATCGATACATT
1 TATCGATACATT
709660 GATCTTTGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.08, T:0.40
Consensus pattern (13 bp):
TATCGATACATTA
Found at i:714193 original size:96 final size:97
Alignment explanation
Indices: 714087--714298 Score: 257
Period size: 96 Copynumber: 2.2 Consensus size: 97
714077 TTAGAGGAAC
*** * * * * *
714087 GGGGTTGGAGTATCTTTGACGATGATAATT-TGAACAAAAATAAGATTTAAACCTGGATAATTTT
1 GGGGTTGGAGTATCCCCGACGATGACAATTCAG-ACAAAAATAAAATTTAAACCTGGACAAGTTT
*
714151 AAAAA-GGGGTTAGAATATCCCTTCGAAAGAAT
65 AAAAATGGGGTTAGAATATCCCCTCGAAAGAAT
* * * *
714183 GGGGTTGGAGTATCCCCGATGATGACAATTCAGACAAAAATAAAATTTAAATCTTGACGAGTTTA
1 GGGGTTGGAGTATCCCCGACGATGACAATTCAGACAAAAATAAAATTTAAACCTGGACAAGTTTA
* * *
714248 AAAATGGGGTTGGAGTATCCCCTCGGAAGAAT
66 AAAATGGGGTTAGAATATCCCCTCGAAAGAAT
714280 GGGGTTGGAGTATCCCCGA
1 GGGGTTGGAGTATCCCCGA
714299 TAGAATTTTG
Statistics
Matches: 98, Mismatches: 16, Indels: 3
0.84 0.14 0.03
Matches are distributed among these distances:
96 55 0.56
97 43 0.44
ACGTcount: A:0.35, C:0.13, G:0.25, T:0.27
Consensus pattern (97 bp):
GGGGTTGGAGTATCCCCGACGATGACAATTCAGACAAAAATAAAATTTAAACCTGGACAAGTTTA
AAAATGGGGTTAGAATATCCCCTCGAAAGAAT
Found at i:714292 original size:97 final size:96
Alignment explanation
Indices: 714120--714299 Score: 261
Period size: 97 Copynumber: 1.9 Consensus size: 96
714110 GATAATTTGA
* * * *
714120 ACAAAAATAAGATTTAAACCTGGATAATTTTAAAAAGGGGTTAGAATATCCCTTCGAAAGAATGG
1 ACAAAAATAAAATTTAAACCTGGACAAGTTTAAAAAGGGGTTAGAATATCCCCTCGAAAGAATGG
714185 GGTTGGAGTATCCCCGATGATGACAATTCAG
66 GGTTGGAGTATCCCCGATGATGACAATTCAG
* * * * * *
714216 ACAAAAATAAAATTTAAATCTTGACGAGTTTAAAAATGGGGTTGGAGTATCCCCTCGGAAGAATG
1 ACAAAAATAAAATTTAAACCTGGACAAGTTTAAAAA-GGGGTTAGAATATCCCCTCGAAAGAATG
714281 GGGTTGGAGTATCCCCGAT
65 GGGTTGGAGTATCCCCGAT
714300 AGAATTTTGA
Statistics
Matches: 73, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
96 30 0.41
97 43 0.59
ACGTcount: A:0.37, C:0.14, G:0.23, T:0.26
Consensus pattern (96 bp):
ACAAAAATAAAATTTAAACCTGGACAAGTTTAAAAAGGGGTTAGAATATCCCCTCGAAAGAATGG
GGTTGGAGTATCCCCGATGATGACAATTCAG
Found at i:716661 original size:19 final size:20
Alignment explanation
Indices: 716637--716689 Score: 81
Period size: 19 Copynumber: 2.7 Consensus size: 20
716627 CTTTGTATAA
*
716637 TGTATCGATACATGTTC-AC
1 TGTATCGATACATGTACAAC
*
716656 TGTATCGATACATGTACAAT
1 TGTATCGATACATGTACAAC
716676 TGTATCGATACATG
1 TGTATCGATACATG
716690 AAACTAGCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 16 0.52
20 15 0.48
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (20 bp):
TGTATCGATACATGTACAAC
Found at i:718356 original size:3 final size:3
Alignment explanation
Indices: 718341--718373 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
718331 AACCATCAAA
*
718341 GAT GAT GAA GAT GAT GAT GAT GAT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
718374 AATGGTGACT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.36, C:0.00, G:0.33, T:0.30
Consensus pattern (3 bp):
GAT
Found at i:722869 original size:13 final size:13
Alignment explanation
Indices: 722851--722889 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
722841 ACAATATTTT
722851 TTGTATCAATACA
1 TTGTATCAATACA
* *
722864 TTGTATCGATATA
1 TTGTATCAATACA
*
722877 TTGTTTCAATACA
1 TTGTATCAATACA
722890 AGGATTACTA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.33, C:0.13, G:0.10, T:0.44
Consensus pattern (13 bp):
TTGTATCAATACA
Found at i:726674 original size:32 final size:32
Alignment explanation
Indices: 726629--726706 Score: 120
Period size: 32 Copynumber: 2.4 Consensus size: 32
726619 TACAGTGAAG
*
726629 AATGTATCGATACATTCAGATTAGAAACCCAT
1 AATGTATCGATACATTCAGATTAAAAACCCAT
* **
726661 AATGTATCAATACATTTGGATTAAAAACCCAT
1 AATGTATCGATACATTCAGATTAAAAACCCAT
726693 AATGTATCGATACA
1 AATGTATCGATACA
726707 ATAAAGAATG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 41 1.00
ACGTcount: A:0.42, C:0.17, G:0.12, T:0.29
Consensus pattern (32 bp):
AATGTATCGATACATTCAGATTAAAAACCCAT
Found at i:726717 original size:52 final size:51
Alignment explanation
Indices: 726661--726780 Score: 186
Period size: 52 Copynumber: 2.3 Consensus size: 51
726651 AGAAACCCAT
* ** *
726661 AATGTATCAATACATTTGGATTAAAAACCCATAATGTATCGATACAATAAA
1 AATGTATCGATACATTTACATTAAAAACCCAGAATGTATCGATACAATAAA
*
726712 GAATGTATCGATACATTTACATTAAAAATCCAGAATGTATCGATACAATAAA
1 -AATGTATCGATACATTTACATTAAAAACCCAGAATGTATCGATACAATAAA
726764 AATGTATCGATACATTT
1 AATGTATCGATACATTT
726781 TCTTTCCAGA
Statistics
Matches: 63, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
51 17 0.27
52 46 0.73
ACGTcount: A:0.45, C:0.13, G:0.11, T:0.31
Consensus pattern (51 bp):
AATGTATCGATACATTTACATTAAAAACCCAGAATGTATCGATACAATAAA
Found at i:726718 original size:84 final size:83
Alignment explanation
Indices: 726576--726758 Score: 249
Period size: 84 Copynumber: 2.2 Consensus size: 83
726566 GATACATTGA
* * * *
726576 AGAATGTATCAATACATTTGGGTCAAAACCCAGAATGTATTGATACAGTGAAGAATGTATCGATA
1 AGAATGTATCAATACATTTGGGTAAAAACCCAGAATGTATCGATACAATAAAGAATGTATCGATA
* *
726641 CATTCAGATTAGAAACCC
66 CATTCACATTAAAAACCC
* * *
726659 ATAATGTATCAATACATTTGGATTAAAAACCCATAATGTATCGATACAATAAAGAATGTATCGAT
1 AGAATGTATCAATACATTTGG-GTAAAAACCCAGAATGTATCGATACAATAAAGAATGTATCGAT
* *
726724 ACATTTACATTAAAAATCC
65 ACATTCACATTAAAAACCC
*
726743 AGAATGTATCGATACA
1 AGAATGTATCAATACA
726759 ATAAAAATGT
Statistics
Matches: 86, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
83 20 0.23
84 66 0.77
ACGTcount: A:0.43, C:0.15, G:0.14, T:0.28
Consensus pattern (83 bp):
AGAATGTATCAATACATTTGGGTAAAAACCCAGAATGTATCGATACAATAAAGAATGTATCGATA
CATTCACATTAAAAACCC
Found at i:726847 original size:20 final size:20
Alignment explanation
Indices: 726818--726864 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
726808 ACAAGGTCCA
*
726818 GTATCAATACAGTCACTTAT
1 GTATCGATACAGTCACTTAT
*
726838 GTATCGATACATTCACTTAT
1 GTATCGATACAGTCACTTAT
726858 GTATCGA
1 GTATCGA
726865 GACATTAACT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (20 bp):
GTATCGATACAGTCACTTAT
Found at i:726869 original size:20 final size:20
Alignment explanation
Indices: 726830--726875 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
726820 ATCAATACAG
*
726830 TCACTTATGTATCGATACAT
1 TCACTTATGTATCGAGACAT
726850 TCACTTATGTATCGAGACAT
1 TCACTTATGTATCGAGACAT
*
726870 TAACTT
1 TCACTT
726876 GTTGTATCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.30, C:0.20, G:0.11, T:0.39
Consensus pattern (20 bp):
TCACTTATGTATCGAGACAT
Found at i:728645 original size:80 final size:77
Alignment explanation
Indices: 728561--728867 Score: 255
Period size: 80 Copynumber: 3.9 Consensus size: 77
728551 ATCCCCTCGA
* * * *
728561 AGATAGTGGGATTGGAGTCTCTTTAGAGATGAAAAAATTGATGTTTTGGAAGTAAAGAGAGGGTT
1 AGATAGTGGG-TTGAAGTATCCTTAGAGAT-AAAAAATTAATGTTTTGGAAGTAAA-AGAGGGTT
* *
728626 GGAGTATCCCCTAAG
63 GGAGTATCTCCTTAG
* * * *
728641 AGATAGTAGGGTTGAAGTATCCTTAAAGGTAAAAAATTCAATGTTTTGGAAATAAAAGTGGGCTT
1 AGATAGT-GGGTTGAAGTATCCTTAGAGATAAAAAATT-AATGTTTTGGAAGTAAAAGAGGG-TT
*
728706 GGAGTATCTTCTTAG
63 GGAGTATCTCCTTAG
* * * * * * *
728721 AGATAATGGGGCTGCAGTATCCCTGGAGATAAAAAATTCATTGTTTTGGAAGTAAAAATAGGGTT
1 AGATAGT-GGGTTGAAGTATCCTTAGAGATAAAAAATT-AATGTTTTGGAAGT-AAAAGAGGGTT
728786 GGAGTATCTCCTTAG
63 GGAGTATCTCCTTAG
* * * * *
728801 AGATAGTGAGGCT-AGAGTATGCTCAAAGATAAAAAATT--TG-TTTGGACA-TAAAAATAGGGT
1 AGATAGTG-GGTTGA-AGTATCCTTAGAGATAAAAAATTAATGTTTTGGA-AGT-AAAAGAGGGT
728861 TGGAGTA
62 TGGAGTA
728868 CCTTTTCAGA
Statistics
Matches: 189, Mismatches: 31, Indels: 18
0.79 0.13 0.08
Matches are distributed among these distances:
76 25 0.13
77 3 0.02
79 14 0.07
80 137 0.72
81 10 0.05
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.30
Consensus pattern (77 bp):
AGATAGTGGGTTGAAGTATCCTTAGAGATAAAAAATTAATGTTTTGGAAGTAAAAGAGGGTTGGA
GTATCTCCTTAG
Found at i:730511 original size:97 final size:97
Alignment explanation
Indices: 730358--730583 Score: 262
Period size: 97 Copynumber: 2.3 Consensus size: 97
730348 ACAAGGTTGG
* * * * * * *
730358 AGTATCCCCTCGGAGGAATAGGGTTGGAGTATCACTAATGATGATGATTTGAGCAAAAATAAGAT
1 AGTATCCCCTCAGAGGAATGGGGTTGGAATATCACTAACGATCATAATTTGAGCAAAAATAAAAT
*
730423 TTAAATTTTGA-GAAGTTTAAAAGCGAGGTTAA
66 TTAAATCTTGACG-AGTTTAAAAGCGAGGTTAA
*
730455 AGTATCCCCTCAGAGGAATGGGGTTGGAATATC-CTCGACGATCATAATTT-AGGCAAAAATAAA
1 AGTATCCCCTCAGAGGAATGGGGTTGGAATATCACT-AACGATCATAATTTGA-GCAAAAATAAA
* *
730518 ATTTAAATCTTGACGAGTTTAAAAGCGGGGTTAG
64 ATTTAAATCTTGACGAGTTTAAAAGCGAGGTTAA
* * *
730552 AGTATCCCCT-TGGGAGAATGGGGTTAGAATAT
1 AGTATCCCCTCAGAG-GAATGGGGTTGGAATAT
730584 TCCTAATGGA
Statistics
Matches: 111, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
96 5 0.05
97 105 0.95
98 1 0.01
ACGTcount: A:0.35, C:0.12, G:0.25, T:0.28
Consensus pattern (97 bp):
AGTATCCCCTCAGAGGAATGGGGTTGGAATATCACTAACGATCATAATTTGAGCAAAAATAAAAT
TTAAATCTTGACGAGTTTAAAAGCGAGGTTAA
Found at i:733753 original size:20 final size:20
Alignment explanation
Indices: 733728--733812 Score: 71
Period size: 20 Copynumber: 3.7 Consensus size: 20
733718 TTTTACCCAG
733728 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
733748 ATGTATCGATACATTCTATTTTTATACTTA
1 ATGTATCGAT--A--C-A-TTTT-T-C--A
733778 GATGTATCGATACATTTTTCA
1 -ATGTATCGATACATTTTTCA
733799 ATGTATCGATACAT
1 ATGTATCGATACAT
733813 CTAGTTAACT
Statistics
Matches: 54, Mismatches: 0, Indels: 22
0.71 0.00 0.29
Matches are distributed among these distances:
20 24 0.44
21 1 0.02
22 1 0.02
23 1 0.02
24 2 0.04
25 5 0.09
26 5 0.09
27 2 0.04
28 1 0.02
29 1 0.02
30 1 0.02
31 10 0.19
ACGTcount: A:0.31, C:0.14, G:0.11, T:0.45
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:733764 original size:51 final size:51
Alignment explanation
Indices: 733704--733812 Score: 191
Period size: 51 Copynumber: 2.1 Consensus size: 51
733694 TACATGCATT
*
733704 GATACATTCTATTTTTTTACCCAGATGTATCGATACATTTTTCAATGTATC
1 GATACATTCTATTTTTATACCCAGATGTATCGATACATTTTTCAATGTATC
**
733755 GATACATTCTATTTTTATACTTAGATGTATCGATACATTTTTCAATGTATC
1 GATACATTCTATTTTTATACCCAGATGTATCGATACATTTTTCAATGTATC
733806 GATACAT
1 GATACAT
733813 CTAGTTAACT
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 55 1.00
ACGTcount: A:0.29, C:0.16, G:0.10, T:0.45
Consensus pattern (51 bp):
GATACATTCTATTTTTATACCCAGATGTATCGATACATTTTTCAATGTATC
Found at i:737755 original size:79 final size:79
Alignment explanation
Indices: 737670--738333 Score: 735
Period size: 79 Copynumber: 8.4 Consensus size: 79
737660 GAGCATCCTT
* * ** **
737670 GAGATGAAAAATTTAATATTTTTGAAATAAAAATAGGGTTGGAGTATCCCCTCAGAAATAATGGG
1 GAGATGAAAAATTTAATATTTTGGAGATAAAAGCAGGGTTGGAGTATCCCCTCAGAAATAACAGG
** *
737735 GTTCAAGCATCCCC
66 GTTGGAGTATCCCC
** * *** **
737749 GAGATGAAAAATTTAATATTTTTTAAATAAAAATGGGGTTGGAGTATCCCCTCCA-AAATAATGG
1 GAGATGAAAAATTTAATATTTTGGAGATAAAAGCAGGGTTGGAGTATCCCCT-CAGAAATAACAG
* *
737813 GGTTGGAGTGTCCCT
65 GGTTGGAGTATCCCC
* *
737828 GAGATGAAAAATTTAATATTTTGGAGATAAAAACTA-GGTTGGAGTATCCCCTCAAAAATAACAG
1 GAGATGAAAAATTTAATATTTTGGAGATAAAAGC-AGGGTTGGAGTATCCCCTCAGAAATAACAG
*
737892 GGTTGGAG-AGTCCTC
65 GGTTGGAGTA-TCCCC
** * * *
737907 GAGATGAAAAATTTAATATTTTGGATTTAAAAGCGGGGTTGGAGTATCCCCACAAAAATAAC-GT
1 GAGATGAAAAATTTAATATTTTGGAGATAAAAGCAGGGTTGGAGTATCCCCTCAGAAATAACAG-
* * * **
737971 GGTTAGAATGTCCTT
65 GGTTGGAGTATCCCC
* * * *
737986 TAGATGAAAAATTTAATATTTTAGAGATAAAAGCAAGGTTGGAGTATCCCCTTAGAAATAACAGG
1 GAGATGAAAAATTTAATATTTTGGAGATAAAAGCAGGGTTGGAGTATCCCCTCAGAAATAACAGG
*
738051 ATTGGAGTATCCCC
66 GTTGGAGTATCCCC
* * * *
738065 GAGATGAAACATTTAATATTTTAGAGATAAAAGCAAGGTTGGAGTATCCCCTTAGAAATAACAGG
1 GAGATGAAAAATTTAATATTTTGGAGATAAAAGCAGGGTTGGAGTATCCCCTCAGAAATAACAGG
*
738130 ATTGGAGTATCCCC
66 GTTGGAGTATCCCC
*
738144 GAGATGAAACATTTAATATTTTGGAGATAAAAGCAGGGTTGGAGTATCCCCTCAGAAATAACAGG
1 GAGATGAAAAATTTAATATTTTGGAGATAAAAGCAGGGTTGGAGTATCCCCTCAGAAATAACAGG
* *
738209 ATTGGAGTATCCAC
66 GTTGGAGTATCCCC
* * * * **
738223 GAGATGAAACATTTAATATTTTGGAGATAAAAGCGGGGTTAGAGTATCCCCTCAAAAATAGTAGG
1 GAGATGAAAAATTTAATATTTTGGAGATAAAAGCAGGGTTGGAGTATCCCCTCAGAAATAACAGG
* * *
738288 GTTGGAATGTCCAC
66 GTTGGAGTATCCCC
* * *
738302 GAGATGAAGAAA-ATCATATTTTGGAAATAAAA
1 GAGATGAA-AAATTTAATATTTTGGAGATAAAA
738334 ACATCGATGA
Statistics
Matches: 517, Mismatches: 59, Indels: 18
0.87 0.10 0.03
Matches are distributed among these distances:
78 3 0.01
79 509 0.98
80 5 0.01
ACGTcount: A:0.38, C:0.12, G:0.22, T:0.28
Consensus pattern (79 bp):
GAGATGAAAAATTTAATATTTTGGAGATAAAAGCAGGGTTGGAGTATCCCCTCAGAAATAACAGG
GTTGGAGTATCCCC
Found at i:740555 original size:51 final size:51
Alignment explanation
Indices: 740463--740599 Score: 175
Period size: 51 Copynumber: 2.7 Consensus size: 51
740453 AAAAATGCCT
* * * * * *
740463 GAATGTATCGATACATTGAGAAATATATCGATATATGTAGGTTAAAACCTA
1 GAATGTATCGATACAATGAAAAATGTATCGATACATCTAGGTTAAAACCCA
* * *
740514 GAATATATTGATACAATGAAAAATGTATCGATACATCTAGGTTGAAACCCA
1 GAATGTATCGATACAATGAAAAATGTATCGATACATCTAGGTTAAAACCCA
* *
740565 AAATGTATCGATACAATGAAAAATGTATTGATACA
1 GAATGTATCGATACAATGAAAAATGTATCGATACA
740600 AATAGTAAAT
Statistics
Matches: 73, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
51 73 1.00
ACGTcount: A:0.44, C:0.11, G:0.16, T:0.29
Consensus pattern (51 bp):
GAATGTATCGATACAATGAAAAATGTATCGATACATCTAGGTTAAAACCCA
Found at i:740589 original size:20 final size:20
Alignment explanation
Indices: 740564--740620 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 20
740554 GTTGAAACCC
740564 AAAATGTATCGATACAAT-G
1 AAAATGTATCGATACAATAG
*
740583 AAAAATGTATTGATACAAATAG
1 -AAAATGTATCGATAC-AATAG
*
740605 TAAATGTATCGATACA
1 AAAATGTATCGATACA
740621 TTTACTTATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
20 15 0.47
21 16 0.50
22 1 0.03
ACGTcount: A:0.49, C:0.09, G:0.14, T:0.28
Consensus pattern (20 bp):
AAAATGTATCGATACAATAG
Found at i:743073 original size:21 final size:21
Alignment explanation
Indices: 743049--743089 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
743039 AGCCATTAAT
743049 CTTTATGAAAA-TAACCTTTGC
1 CTTT-TGAAAATTAACCTTTGC
*
743070 CTTTTGAAAATTAAGCTTTG
1 CTTTTGAAAATTAACCTTTG
743090 AAACTTGTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.32, C:0.15, G:0.12, T:0.41
Consensus pattern (21 bp):
CTTTTGAAAATTAACCTTTGC
Found at i:754701 original size:22 final size:22
Alignment explanation
Indices: 754676--754739 Score: 78
Period size: 22 Copynumber: 2.9 Consensus size: 22
754666 GGCGTCCTCC
*
754676 ACAAAAAAA-AAAGAACAAACAA
1 ACAAAAAAACAAA-AAAAAACAA
754698 ACAAAAAAACAAAAAAAAACAA
1 ACAAAAAAACAAAAAAAAACAA
754720 ACAAAAGCAAA-AAAAAAAAA
1 ACAAAA--AAACAAAAAAAAA
754740 GGTCTGGATG
Statistics
Matches: 38, Mismatches: 1, Indels: 5
0.86 0.02 0.11
Matches are distributed among these distances:
22 23 0.61
23 12 0.32
24 3 0.08
ACGTcount: A:0.84, C:0.12, G:0.03, T:0.00
Consensus pattern (22 bp):
ACAAAAAAACAAAAAAAAACAA
Found at i:754718 original size:26 final size:28
Alignment explanation
Indices: 754678--754739 Score: 94
Period size: 27 Copynumber: 2.3 Consensus size: 28
754668 CGTCCTCCAC
754678 AAAAAAAAAAGAACAAAC-AAA-CAAAA
1 AAAAAAAAAAGAACAAACAAAAGCAAAA
754704 AAACAAAAAAA-AACAAACAAAAGCAAAA
1 AAA-AAAAAAAGAACAAACAAAAGCAAAA
754732 AAAAAAAA
1 AAAAAAAA
754740 GGTCTGGATG
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
26 10 0.30
27 15 0.45
28 8 0.24
ACGTcount: A:0.85, C:0.11, G:0.03, T:0.00
Consensus pattern (28 bp):
AAAAAAAAAAGAACAAACAAAAGCAAAA
Found at i:756251 original size:28 final size:28
Alignment explanation
Indices: 756169--756243 Score: 132
Period size: 28 Copynumber: 2.7 Consensus size: 28
756159 CATTCCTCAC
756169 CCTTCAAAAGCCCACAAGTCAGTGGCAA
1 CCTTCAAAAGCCCACAAGTCAGTGGCAA
* *
756197 CCTTAAAAAGCCCACAGGTCAGTGGCAA
1 CCTTCAAAAGCCCACAAGTCAGTGGCAA
756225 CCTTCAAAAGCCCACAAGT
1 CCTTCAAAAGCCCACAAGT
756244 TTGTGGCATT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.36, C:0.32, G:0.17, T:0.15
Consensus pattern (28 bp):
CCTTCAAAAGCCCACAAGTCAGTGGCAA
Found at i:756310 original size:60 final size:60
Alignment explanation
Indices: 756246--756479 Score: 267
Period size: 60 Copynumber: 3.8 Consensus size: 60
756236 CCACAAGTTT
* *
756246 GTGGCATTTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCC
1 GTGGCACTTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCATAACTCC
* *
756306 GTGGCACCTTGTTT-CTTTTCAAAG-CCTACAACTCCGTGGCACTCATTTTCCTTTTAAGCCCAT
1 GTGGCA-CTTTTTTCCTTTT--AAGTCC-ACAACTCCGTGGCA--C-----CCTTTTAAGTCCAT
756369 AACTCC
55 AACTCC
756375 GTGGCACTTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCATAACTCC
1 GTGGCACTTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCATAACTCC
* * ** *
756435 GTGGCAC-CTTTTCTTTTTAAGTCCATGACTCTGTGGCACCCTTTT
1 GTGGCACTTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTT
756480 CCCTTTCAAG
Statistics
Matches: 150, Mismatches: 11, Indels: 27
0.80 0.06 0.14
Matches are distributed among these distances:
59 33 0.22
60 37 0.25
61 7 0.05
62 17 0.11
64 1 0.01
65 1 0.01
67 17 0.11
68 8 0.05
69 29 0.19
ACGTcount: A:0.19, C:0.31, G:0.14, T:0.36
Consensus pattern (60 bp):
GTGGCACTTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCATAACTCC
Found at i:756337 original size:35 final size:31
Alignment explanation
Indices: 756254--756542 Score: 186
Period size: 34 Copynumber: 9.0 Consensus size: 31
756244 TTGTGGCATT
756254 TTTTTCCTTTTAAGTCCACAACTCCGTGGCACC
1 TTTTT-CTTTTAAG-CCACAACTCCGTGGCACC
756287 -----CTTTTAAGTCCACAACTCCGTGGCACC
1 TTTTTCTTTTAAG-CCACAACTCCGTGGCACC
756314 TTGTTTCTTTTCAAAGCCTACAACTCCGTGGCACTC
1 TT-TTTCTTTT--AAGCC-ACAACTCCGTGGCAC-C
* * *
756350 ATTTTCCTTTTAAGCCCATAACTCCGTGGCACT
1 -TTTTTCTTTTAAG-CCACAACTCCGTGGCACC
756383 TTTTTCCTTTTAAGTCCACAACTCCGTGGCACC
1 TTTTT-CTTTTAAG-CCACAACTCCGTGGCACC
*
756416 -----CTTTTAAGTCCATAACTCCGTGGCACC
1 TTTTTCTTTTAAG-CCACAACTCCGTGGCACC
** *
756443 -TTTTCTTTTTAAGTCCATGACTCTGTGGCACCC
1 TTTTTC-TTTTAAG-CCACAACTCCGTGGCA-CC
* * *
756476 TTTTCCCTTTCAAGCCCACACCTCCGTGGCATCAC
1 TTTT-TCTTTTAAG-CCACAACTCCGTGGCA-C-C
* * * *
756511 TTTTTCCTGTAAGCCTACAAGTCGGTGGCACC
1 TTTTTCTTTTAAGCC-ACAACTCCGTGGCACC
756543 CCTTTCAAAA
Statistics
Matches: 208, Mismatches: 25, Indels: 47
0.74 0.09 0.17
Matches are distributed among these distances:
27 53 0.25
31 1 0.00
32 27 0.13
33 34 0.16
34 57 0.27
35 26 0.12
36 8 0.04
37 2 0.01
ACGTcount: A:0.19, C:0.33, G:0.14, T:0.34
Consensus pattern (31 bp):
TTTTTCTTTTAAGCCACAACTCCGTGGCACC
Found at i:756373 original size:34 final size:32
Alignment explanation
Indices: 756255--756506 Score: 238
Period size: 27 Copynumber: 7.9 Consensus size: 32
756245 TGTGGCATTT
756255 TTTTCCTTTTAAGTCCACAACTCCGTGGCA-C
1 TTTTCCTTTTAAGTCCACAACTCCGTGGCACC
756286 ----CCTTTTAAGTCCACAACTCCGTGGCACC
1 TTTTCCTTTTAAGTCCACAACTCCGTGGCACC
*
756314 TTGTTTCTTTTCAAAG-CCTACAACTCCGTGGCACTC
1 TT-TTCCTTTT--AAGTCC-ACAACTCCGTGGCAC-C
* * *
756350 ATTTTCCTTTTAAGCCCATAACTCCGTGGCACTT
1 -TTTTCCTTTTAAGTCCACAACTCCGTGGCAC-C
756384 TTTTCCTTTTAAGTCCACAACTCCGTGGCA-C
1 TTTTCCTTTTAAGTCCACAACTCCGTGGCACC
*
756415 ----CCTTTTAAGTCCATAACTCCGTGGCACC
1 TTTTCCTTTTAAGTCCACAACTCCGTGGCACC
* ** *
756443 TTTTCTTTTTAAGTCCATGACTCTGTGGCACCC
1 TTTTCCTTTTAAGTCCACAACTCCGTGGCA-CC
* * *
756476 TTTTCCCTTTCAAGCCCACACCTCCGTGGCA
1 TTTT-CCTTTTAAGTCCACAACTCCGTGGCA
756507 TCACTTTTTC
Statistics
Matches: 184, Mismatches: 18, Indels: 35
0.78 0.08 0.15
Matches are distributed among these distances:
27 51 0.28
28 2 0.01
32 23 0.12
33 39 0.21
34 39 0.21
35 20 0.11
36 8 0.04
37 2 0.01
ACGTcount: A:0.19, C:0.33, G:0.13, T:0.34
Consensus pattern (32 bp):
TTTTCCTTTTAAGTCCACAACTCCGTGGCACC
Found at i:756476 original size:59 final size:60
Alignment explanation
Indices: 756355--756479 Score: 189
Period size: 59 Copynumber: 2.1 Consensus size: 60
756345 CACTCATTTT
*
756355 CCTTTTAAGCCCATAACTCCGTGGCACTTTTTTCCTTTTAAGTCCACAACTCCGTGGCAC
1 CCTTTTAAGCCCATAACTCCGTGGCACTCTTTTCCTTTTAAGTCCACAACTCCGTGGCAC
* * ** *
756415 CCTTTTAAGTCCATAACTCCGTGGCAC-CTTTTCTTTTTAAGTCCATGACTCTGTGGCAC
1 CCTTTTAAGCCCATAACTCCGTGGCACTCTTTTCCTTTTAAGTCCACAACTCCGTGGCAC
756474 CCTTTT
1 CCTTTT
756480 CCCTTTCAAG
Statistics
Matches: 59, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
59 33 0.56
60 26 0.44
ACGTcount: A:0.18, C:0.31, G:0.14, T:0.37
Consensus pattern (60 bp):
CCTTTTAAGCCCATAACTCCGTGGCACTCTTTTCCTTTTAAGTCCACAACTCCGTGGCAC
Found at i:756515 original size:129 final size:129
Alignment explanation
Indices: 756232--756506 Score: 380
Period size: 129 Copynumber: 2.2 Consensus size: 129
756222 CAACCTTCAA
* ** *
756232 AAGCCCACAAGTTTGTGGCATTTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTC
1 AAGCCCACAACTCCGTGGCACTTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTC
*
756297 CACAACTCCGTGGCACCTTGTTTCTTTTCAAAGCCTACAACTCCGTGGCACTCATTTTCCTTTT
66 CACAACTCCGTGGCACCTTGTTTCTTTTCAAAGCCTACAACTCCGTGGCACTCATTTTCCTTTC
*
756361 AAGCCCATAACTCCGTGGCACTTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTC
1 AAGCCCACAACTCCGTGGCACTTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTC
* * ** * *
756426 CATAACTCCGTGGCACC-T-TTTCTTTT-TAAGTCC-ATGACTCTGTGGCAC-CCTTTTCCCTTT
66 CACAACTCCGTGGCACCTTGTTTCTTTTCAAAG-CCTACAACTCCGTGGCACTCATTTT-CCTTT
756486 C
129 C
*
756487 AAGCCCACACCTCCGTGGCA
1 AAGCCCACAACTCCGTGGCA
756507 TCACTTTTTC
Statistics
Matches: 130, Mismatches: 14, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
125 5 0.04
126 38 0.29
127 10 0.08
128 1 0.01
129 76 0.58
ACGTcount: A:0.20, C:0.32, G:0.14, T:0.34
Consensus pattern (129 bp):
AAGCCCACAACTCCGTGGCACTTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTC
CACAACTCCGTGGCACCTTGTTTCTTTTCAAAGCCTACAACTCCGTGGCACTCATTTTCCTTTC
Found at i:756561 original size:30 final size:28
Alignment explanation
Indices: 756521--756616 Score: 79
Period size: 28 Copynumber: 3.3 Consensus size: 28
756511 TTTTTCCTGT
*
756521 AAGCCTACAAGTCGGTGGCACCCCTTTCAA
1 AAGCCCACAAGT-GGTGGCA-CCCTTTCAA
*
756551 AAGCCCACAAGTGAGTGGCA-ACTTTCAA
1 AAGCCCACAAGTG-GTGGCACCCTTTCAA
* * * *
756579 AAGCACAAAAGTTGAT-GCAACCCTTTAAA
1 AAGCCCACAAG-TGGTGGC-ACCCTTTCAA
756608 AAGCCCACA
1 AAGCCCACA
756617 CAAGTTGGTG
Statistics
Matches: 53, Mismatches: 9, Indels: 9
0.75 0.13 0.13
Matches are distributed among these distances:
27 2 0.04
28 18 0.34
29 16 0.30
30 17 0.32
ACGTcount: A:0.36, C:0.28, G:0.18, T:0.18
Consensus pattern (28 bp):
AAGCCCACAAGTGGTGGCACCCTTTCAA
Found at i:756715 original size:49 final size:49
Alignment explanation
Indices: 756638--757150 Score: 304
Period size: 49 Copynumber: 10.8 Consensus size: 49
756628 CATCTTCTTC
* * * * *
756638 TAAGTCCAATATCGCTAGCCTTGAATCAGCATATTAGTACCTTTAACTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAACTT
* * *
756687 TAAGACCAATGTCACTGGCCTTGAATCAG--TA----CA---TTAGC-A
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAACTT
* * * * *
756726 CAAGCCCAATATCGTTGGCCATGAATCAGCATATTGGCACCTTGT--CTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTT-TAACTT
756774 TAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGG---C----AC--
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAACTT
* * * * *
756814 -AAG-CTCAAT-TCACTAGCCTTGAATCAGCATATGGGCACCTTCATCTTT
1 TAAGAC-CAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAAC-TT
* * *
756862 TAA-ACCGATGTCGTTGGCCTTGAATCAGCACATTGGCACC-TTAACCATTTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAA-C---TT
* ** * * * *
756913 TAAGTCCAATGTCGCTAACCTTGAATCAGCACATTGGCATCTTCATCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAACTT
* ** * * * *
756962 TAAGTCCGGTATCGCTAGCCTTGAATCAGCATATTGGCACCGTTATCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAACTT
* * *
757011 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAACTT
* * * ** *
757060 TAAGTCCGATATCATTGGCCTTGAATCAGCATATTGGCATCTTTAACATT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAAC-TT
* * * ** *
757110 CCTAAGCCCAACGTCACTGGCCTTGTCTCAGCACATTGGCA
1 --TAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCA
757151 TTCTTCTTCA
Statistics
Matches: 358, Mismatches: 72, Indels: 65
0.72 0.15 0.13
Matches are distributed among these distances:
38 24 0.07
39 30 0.08
40 4 0.01
41 3 0.01
42 1 0.00
43 1 0.00
45 4 0.01
47 3 0.01
48 38 0.11
49 177 0.49
50 2 0.01
51 6 0.02
52 63 0.18
53 2 0.01
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (49 bp):
TAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAACTT
Found at i:756799 original size:87 final size:86
Alignment explanation
Indices: 756643--756900 Score: 322
Period size: 87 Copynumber: 3.0 Consensus size: 86
756633 TCTTCTAAGT
* * *
756643 CCAATATCGCTAGCCTTGAATCAGCATATTAGTACCTTTAACTTTAAGACCAATGTCACTGGCCT
1 CCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTT--CTTTAAGACCAATGTCGCTGGCCT
* *
756708 TGAATCAGTACATTAGCACAAGC
64 TGAATCAGCACATTGGCACAAGC
* * *
756731 CCAATATCGTTGGCCATGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTT
1 CCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTT-TCTTTAAGACCAATGTCGCTGGCCTT
*
756796 GAATCAGCATATTGGCACAAGC
65 GAATCAGCACATTGGCACAAGC
* * * * *
756818 TCAAT-TCACTAGCCTTGAATCAGCATATGGGCACCTTCATCTTTTAA-ACCGATGTCGTTGGCC
1 CCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTT--TC-TTTAAGACCAATGTCGCTGGCC
756881 TTGAATCAGCACATTGGCAC
63 TTGAATCAGCACATTGGCAC
756901 CTTAACCATT
Statistics
Matches: 148, Mismatches: 19, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
86 27 0.18
87 82 0.55
88 38 0.26
89 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.29
Consensus pattern (86 bp):
CCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTCTTTAAGACCAATGTCGCTGGCCTTG
AATCAGCACATTGGCACAAGC
Found at i:757133 original size:150 final size:148
Alignment explanation
Indices: 756823--757150 Score: 365
Period size: 150 Copynumber: 2.2 Consensus size: 148
756813 CAAGCTCAAT
* * *
756823 TCACTAGCCTTGAATCAGCATATGGGCACCTTCATCTTTTAAACCGATGTCGTTGGCCTTGAATC
1 TCACTAGCCTTGAATCAGCATATTGGCACCTTCATCTTTTAAACCAATGTCGCTGGCCTTGAATC
* * *
756888 AGCACATTGGCACCTTAACCATTTTTAAGTCCAATGTCGCTAACCTTGAATCAGCACATTGGCAT
66 AGCACATTGGCACCTT-A-CATCTTTAAGTCCAATATCACTAACCTTGAATCAGCACATTGGCAT
* * ***
756953 CTTCATCTTTAAGTCCGGTA
129 CTTCAACTTTAAGCCCAACA
*
756973 TCGCTAGCCTTGAATCAGCATATTGGCACCGTT-ATC-TTTAAGACCAATGTCGCTGGCCTTGAA
1 TCACTAGCCTTGAATCAGCATATTGGCACC-TTCATCTTTTAA-ACCAATGTCGCTGGCCTTGAA
* * ** *
757036 TCAGCACATTGGCACCTT-CATCTTTAAGTCCGATATCATTGGCCTTGAATCAGCATATTGGCAT
64 TCAGCACATTGGCACCTTACATCTTTAAGTCCAATATCACTAACCTTGAATCAGCACATTGGCAT
* *
757100 CTTTAACATTCCTAAGCCCAACG
129 CTTCAAC-TT--TAAGCCCAACA
* ** *
757123 TCACTGGCCTTGTCTCAGCACATTGGCA
1 TCACTAGCCTTGAATCAGCATATTGGCA
757151 TTCTTCTTCA
Statistics
Matches: 149, Mismatches: 24, Indels: 10
0.81 0.13 0.05
Matches are distributed among these distances:
147 43 0.29
148 2 0.01
149 5 0.03
150 97 0.65
151 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.31
Consensus pattern (148 bp):
TCACTAGCCTTGAATCAGCATATTGGCACCTTCATCTTTTAAACCAATGTCGCTGGCCTTGAATC
AGCACATTGGCACCTTACATCTTTAAGTCCAATATCACTAACCTTGAATCAGCACATTGGCATCT
TCAACTTTAAGCCCAACA
Found at i:757577 original size:13 final size:13
Alignment explanation
Indices: 757559--757584 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
757549 ACACCAAAGT
757559 ATGTATCGATACA
1 ATGTATCGATACA
757572 ATGTATCGATACA
1 ATGTATCGATACA
757585 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:757582 original size:33 final size:33
Alignment explanation
Indices: 757540--757604 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
757530 TAGCCAAACT
* *
757540 TGTATCGATACAC-CAAAGTATGTATCGATACAA
1 TGTATCGATACACAAAAAAT-TGTATCGATACAA
757573 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
757605 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 25 0.86
34 4 0.14
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:759190 original size:20 final size:20
Alignment explanation
Indices: 759165--759219 Score: 101
Period size: 20 Copynumber: 2.8 Consensus size: 20
759155 TTTTGACCTA
759165 AATGTATCGATACATTCTTC
1 AATGTATCGATACATTCTTC
*
759185 AATGTATCAATACATTCTTC
1 AATGTATCGATACATTCTTC
759205 AATGTATCGATACAT
1 AATGTATCGATACAT
759220 GTAGGCAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.35, C:0.18, G:0.09, T:0.38
Consensus pattern (20 bp):
AATGTATCGATACATTCTTC
Found at i:763230 original size:9 final size:10
Alignment explanation
Indices: 763206--763231 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
763196 CTAGAAAACG
763206 ATTTTTTCAT
1 ATTTTTTCAT
763216 ATTTTTTCAT
1 ATTTTTTCAT
763226 ATTTTT
1 ATTTTT
763232 AAATCGACCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.19, C:0.08, G:0.00, T:0.73
Consensus pattern (10 bp):
ATTTTTTCAT
Found at i:766138 original size:157 final size:154
Alignment explanation
Indices: 765840--766503 Score: 670
Period size: 157 Copynumber: 4.2 Consensus size: 154
765830 NNTCTCTTAC
* *
765840 TGGCATC-TTTCTTC-AAGTCCGCGACTCAGTGGCAATCTCTTCTCAAAGTCCACGA-TTAGTGG
1 TGGCATCTTTTCTTCAAAGTCCACGACTCAGTGGC-ATCTCTTCTCAAAGTCCACGACTCAGTGG
* * * * *
765902 CATCTCTTCCCAAGTCTATGACTCAATGGCATC---TT-TTCCAAAGTTCATGACTCAATGGCAA
65 CATCTCTTCCCAAGTCCACGACTCAATGGCATCTTTTTCTTCCAAAGTCCACGACTCAGTGGC-A
765963 TCTTTTCTTCAAAGTCCACGACTCAG
129 TCTTTTCTTCAAAGTCCACGACTCAG
* * * * * * *
765989 TGGCAATCTCTT-TTCAAACTCCATGACTTAGTGGCATCTCTT-TCCTAAGTCCATGATTCAGTG
1 TGGC-ATCTTTTCTTCAAAGTCCACGACTCAGTGGCATCTCTTCT-CAAAGTCCACGACTCAGTG
* * *
766052 GCATCCTTTTCTTCCAAGTCCACGACTTAATGGCATCTTTTTTCTT-TAAAGTCCACGACTCAGT
64 GCAT-CTCTTC--CCAAGTCCACGACTCAATGGCATC-TTTTTCTTCCAAAGTCCACGACTCAGT
766116 GGCATCTTTTCTTCAAAGTCCACGACTCAG
125 GGCATCTTTTCTTCAAAGTCCACGACTCAG
* *
766146 TGGCAATCTTTTCTTCAAAGTCCACGACTCAGTGGAAATCTCTTCTCAAAGTCCAAGACTCAGTG
1 TGGC-ATCTTTTCTTCAAAGTCCACGACTCAGTGG-CATCTCTTCTCAAAGTCCACGACTCAGTG
* * * * *
766211 GCATCTCTTTCCTAAGTCCAAGACTCAGTGGCATCCTTTTCTT-CTAAGTCCACGACTCAGT-GC
64 GCATCTC-TTCCCAAGTCCACGACTCAATGGCATCTTTTTCTTCCAAAGTCCACGACTCAGTGGC
* *
766274 ATCTTTTTTTCTTCAAAGTCTACGACTCAA
128 ATC---TTTTCTTCAAAGTCCACGACTCAG
* * * *
766304 TGGCATCTTTTCTTCAAAGTCCACGACTCAATAGCATCTTTTTTTCAAAGTCCACGACTCAGTGG
1 TGGCATCTTTTCTTCAAAGTCCACGACTCAGTGGCATC-TCTTCTCAAAGTCCACGACTCAGTGG
* * **
766369 CAATCTCTTCTCCAAGTCCACAACTCAGTGGCATCTTTTTCTTCCCAAAGTCCACGACTTTGTGG
65 C-ATCTCTTC-CCAAGTCCACGACTCAATGGCATCTTTTTCTT-CCAAAGTCCACGACTCAGTGG
* *
766434 CACTTTTTTCTTTTCATAGTCCACGACTTC-G
127 CA-TCTTTTC--TTCAAAGTCCACGAC-TCAG
* *
766465 TGGCATCTTTTTCTTCCCAAAGTCCATGACTCTGTGGCA
1 TGGCATC-TTTTCTT--CAAAGTCCACGACTCAGTGGCA
766504 CCTTTTTATT
Statistics
Matches: 427, Mismatches: 55, Indels: 51
0.80 0.10 0.10
Matches are distributed among these distances:
149 5 0.01
150 23 0.05
151 26 0.06
152 5 0.01
154 21 0.05
155 5 0.01
156 26 0.06
157 113 0.26
158 99 0.23
159 37 0.09
160 16 0.04
161 23 0.05
162 10 0.02
164 18 0.04
ACGTcount: A:0.23, C:0.28, G:0.15, T:0.34
Consensus pattern (154 bp):
TGGCATCTTTTCTTCAAAGTCCACGACTCAGTGGCATCTCTTCTCAAAGTCCACGACTCAGTGGC
ATCTCTTCCCAAGTCCACGACTCAATGGCATCTTTTTCTTCCAAAGTCCACGACTCAGTGGCATC
TTTTCTTCAAAGTCCACGACTCAG
Found at i:766157 original size:189 final size:189
Alignment explanation
Indices: 765921--766409 Score: 745
Period size: 189 Copynumber: 2.6 Consensus size: 189
765911 CCAAGTCTAT
* *
765921 GACTCAATGGCATCTTTTC--CAAAGTTCATGACTCAATGGCAATCTTTTCTTCAAAGTCCACGA
1 GACTCAATGGCATCTTTTCTTCAAAGTCCACGACTCAATGGCAATCTTTTCTTCAAAGTCCACGA
* * * * * *
765984 CTCAGTGGCAATCTCTTTTCAAACTCCATGACTTAGTGGCATCTCTTTCCTAAGTCCATGATTCA
66 CTCAGTGGCAATCTCTTCTCAAAGTCCAAGACTCAGTGGCATCTCTTTCCTAAGTCCAAGACTCA
* *
766049 GTGGCATCCTTTTCTTCCAAGTCCACGACTTAATGGCATC-TTTTTTCTTTAAAGTCCAC
131 GTGGCATCCTTTTCTTCCAAGTCCACGACTCAAT-GCATCTTTTTTTCTTCAAAGTCCAC
* *
766108 GACTCAGTGGCATCTTTTCTTCAAAGTCCACGACTCAGTGGCAATCTTTTCTTCAAAGTCCACGA
1 GACTCAATGGCATCTTTTCTTCAAAGTCCACGACTCAATGGCAATCTTTTCTTCAAAGTCCACGA
*
766173 CTCAGTGGAAATCTCTTCTCAAAGTCCAAGACTCAGTGGCATCTCTTTCCTAAGTCCAAGACTCA
66 CTCAGTGGCAATCTCTTCTCAAAGTCCAAGACTCAGTGGCATCTCTTTCCTAAGTCCAAGACTCA
* * *
766238 GTGGCATCCTTTTCTTCTAAGTCCACGACTCAGTGCATCTTTTTTTCTTCAAAGTCTAC
131 GTGGCATCCTTTTCTTCCAAGTCCACGACTCAATGCATCTTTTTTTCTTCAAAGTCCAC
* *
766297 GACTCAATGGCATCTTTTCTTCAAAGTCCACGACTCAATAGC-ATCTTTTTTTCAAAGTCCACGA
1 GACTCAATGGCATCTTTTCTTCAAAGTCCACGACTCAATGGCAATCTTTTCTTCAAAGTCCACGA
* *
766361 CTCAGTGGCAATCTCTTCTCCAAGTCCACA-ACTCAGTGGCATCTTTTTC
66 CTCAGTGGCAATCTCTTCTCAAAGTCCA-AGACTCAGTGGCATCTCTTTC
766410 TTCCCAAAGT
Statistics
Matches: 275, Mismatches: 23, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
187 18 0.07
188 70 0.25
189 187 0.68
ACGTcount: A:0.24, C:0.28, G:0.14, T:0.34
Consensus pattern (189 bp):
GACTCAATGGCATCTTTTCTTCAAAGTCCACGACTCAATGGCAATCTTTTCTTCAAAGTCCACGA
CTCAGTGGCAATCTCTTCTCAAAGTCCAAGACTCAGTGGCATCTCTTTCCTAAGTCCAAGACTCA
GTGGCATCCTTTTCTTCCAAGTCCACGACTCAATGCATCTTTTTTTCTTCAAAGTCCAC
Found at i:766420 original size:34 final size:32
Alignment explanation
Indices: 765840--766537 Score: 583
Period size: 31 Copynumber: 22.2 Consensus size: 32
765830 NNTCTCTTAC
*
765840 TGGCATC--TTTCTTC-AAGTCCGCGACTCAG
1 TGGCATCTTTTTCTTCAAAGTCCACGACTCAG
* *
765869 TGGCAATC-TCTTC-TCAAAGTCCACGA-TTAG
1 TGGC-ATCTTTTTCTTCAAAGTCCACGACTCAG
* * * * *
765899 TGGCATC-TCTTC--CCAAGTCTATGACTCAA
1 TGGCATCTTTTTCTTCAAAGTCCACGACTCAG
* * *
765928 TGGCATC-TTTTC--CAAAGTTCATGACTCAA
1 TGGCATCTTTTTCTTCAAAGTCCACGACTCAG
765957 TGGCAATC-TTTTCTTCAAAGTCCACGACTCAG
1 TGGC-ATCTTTTTCTTCAAAGTCCACGACTCAG
* * * *
765989 TGGCAATC-TCTT-TTCAAACTCCATGACTTAG
1 TGGC-ATCTTTTTCTTCAAAGTCCACGACTCAG
* * * *
766020 TGGCATCTCTTTC--CTAAGTCCATGATTCAG
1 TGGCATCTTTTTCTTCAAAGTCCACGACTCAG
* * * *
766050 TGGCATCCTTTTCTTCCAAGTCCACGACTTAA
1 TGGCATCTTTTTCTTCAAAGTCCACGACTCAG
*
766082 TGGCATCTTTTTTCTTTAAAGTCCACGACTCAG
1 TGGCATC-TTTTTCTTCAAAGTCCACGACTCAG
766115 TGGCATC-TTTTCTTCAAAGTCCACGACTCAG
1 TGGCATCTTTTTCTTCAAAGTCCACGACTCAG
766146 TGGCAATC-TTTTCTTCAAAGTCCACGACTCAG
1 TGGC-ATCTTTTTCTTCAAAGTCCACGACTCAG
* * *
766178 TGGAAATC-TCTTC-TCAAAGTCCAAGACTCAG
1 TGG-CATCTTTTTCTTCAAAGTCCACGACTCAG
* * *
766209 TGGCATCTCTTTC--CTAAGTCCAAGACTCAG
1 TGGCATCTTTTTCTTCAAAGTCCACGACTCAG
* *
766239 TGGCATCCTTTTCTTCTAAGTCCACGACTCAG
1 TGGCATCTTTTTCTTCAAAGTCCACGACTCAG
* *
766271 T-GCATCTTTTTTTCTTCAAAGTCTACGACTCAA
1 TGGCATC--TTTTTCTTCAAAGTCCACGACTCAG
*
766304 TGGCATC-TTTTCTTCAAAGTCCACGACTCAA
1 TGGCATCTTTTTCTTCAAAGTCCACGACTCAG
*
766335 TAGCATCTTTTT-TTCAAAGTCCACGACTCAG
1 TGGCATCTTTTTCTTCAAAGTCCACGACTCAG
* * *
766366 TGGCAATC-TCTTC-TCCAAGTCCACAACTCAG
1 TGGC-ATCTTTTTCTTCAAAGTCCACGACTCAG
**
766397 TGGCATCTTTTTCTTCCCAAAGTCCACGACTTTG
1 TGGCATCTTTTTCTT--CAAAGTCCACGACTCAG
*
766431 TGGCA-CTTTTTTCTTTTCATAGTCCACGACTTC-G
1 TGGCATC-TTTTTC--TTCAAAGTCCACGAC-TCAG
* *
766465 TGGCATCTTTTTCTTCCCAAAGTCCATGACTCTG
1 TGGCATCTTTTTCTT--CAAAGTCCACGACTCAG
* * * *
766499 TGGCACCTTTTTATTTTCAAAGTCCACAACTCTG
1 TGGCATC-TTTT-TCTTCAAAGTCCACGACTCAG
766533 TGGCA
1 TGGCA
766538 CCCTTTTAAG
Statistics
Matches: 560, Mismatches: 72, Indels: 69
0.80 0.10 0.10
Matches are distributed among these distances:
28 9 0.02
29 43 0.08
30 80 0.14
31 166 0.30
32 108 0.19
33 52 0.09
34 91 0.16
35 6 0.01
36 5 0.01
ACGTcount: A:0.23, C:0.28, G:0.15, T:0.34
Consensus pattern (32 bp):
TGGCATCTTTTTCTTCAAAGTCCACGACTCAG
Found at i:766538 original size:34 final size:32
Alignment explanation
Indices: 766382--766929 Score: 420
Period size: 34 Copynumber: 16.8 Consensus size: 32
766372 TCTCTTCTCC
* * **
766382 AAGTCCACAACTCAGTGGCATCTTTTTCTTCCCA
1 AAGTCCACAACTCCGTGGCACCTTTTTCTT--TT
* ** *
766416 AAGTCCACGACTTTGTGGCACTTTTTTCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTT
* * * **
766448 CATAGTCCACGACTTCGTGGCATCTTTTTCTTCCCA
1 -A-AGTCCACAACTCCGTGGCACCTTTTTCTT--TT
** * *
766484 AAGTCCATGACTCTGTGGCACCTTTTTATTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTT
*
766516 CAAAGTCCACAACTCTGTGGCACC-----CTTTT
1 --AAGTCCACAACTCCGTGGCACCTTTTTCTTTT
766545 AAGTCCACAACTCCGTGGCACCCTTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCA-CCTTTTTC-TTTT
* * *
766579 AAAGCCCACAACACCGTAGCACCTTTTTCTTTTT
1 -AAGTCCACAACTCCGTGGCACCTTTTTC-TTTT
* *
766613 ACAGCCCACAACTCCATGGCACTCTTTTTCCTTTT
1 A-AGTCCACAACTCCGTGGCAC-CTTTTT-CTTTT
766648 AAGTCCACAACTCCGTGGCA-C--TTT-TTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTT
*
766676 -AGTCCACAACTCCGTGGCATCTTTTTCCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTT-CTTTT
* *
766708 AAGTCCACAACTCCATGGCACCTTGTTCCTTTT
1 AAGTCCACAACTCCGTGGCACCTT-TTTCTTTT
* *
766741 AAGCCCACAACTCCGTGGCA-CTATTTCTTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTC-TTTT
* * *
766773 AAGTCCACAAGTCCATGGCATCTTTTTCCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTT-CTTTT
* *
766806 AAGTCCACAACTCCGCGTCACC-TTTTCTTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTC-TTTT
* *
766838 AAGTCCACGACTCCGTGGCAACC-TTTCCTATTT
1 AAGTCCACAACTCCGTGGC-ACCTTTTTCT-TTT
* * * *
766871 AAGCCCACACCTCCGTGGCATTCCTTTTACTTAT
1 AAGTCCACAACTCCGTGGCA--CCTTTTTCTTTT
**
766905 AAGTCCACAACTCTATGGCACCTTT
1 AAGTCCACAACTCCGTGGCACCTTT
766930 AAGTCCAATA
Statistics
Matches: 421, Mismatches: 60, Indels: 68
0.77 0.11 0.12
Matches are distributed among these distances:
27 38 0.09
28 7 0.02
29 4 0.01
30 6 0.01
31 4 0.01
32 59 0.14
33 99 0.24
34 169 0.40
35 34 0.08
36 1 0.00
ACGTcount: A:0.21, C:0.31, G:0.12, T:0.36
Consensus pattern (32 bp):
AAGTCCACAACTCCGTGGCACCTTTTTCTTTT
Found at i:766552 original size:27 final size:27
Alignment explanation
Indices: 766518--766571 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
766508 TTTATTTTCA
*
766518 AAGTCCACAACTCTGTGGCACCCTTTT
1 AAGTCCACAACTCCGTGGCACCCTTTT
766545 AAGTCCACAACTCCGTGGCACCCTTTT
1 AAGTCCACAACTCCGTGGCACCCTTTT
766572 TCTTTTTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.22, C:0.35, G:0.15, T:0.28
Consensus pattern (27 bp):
AAGTCCACAACTCCGTGGCACCCTTTT
Found at i:766573 original size:130 final size:127
Alignment explanation
Indices: 766416--766863 Score: 325
Period size: 130 Copynumber: 3.4 Consensus size: 127
766406 TTTCTTCCCA
* ** * * ** * *
766416 AAGTCCACGACTTTGTGGCACTTTTTTCTTTTCATAGTCCACGACTTCGTGGCATCTTTTTCTTC
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTT-A-AGTCCACAACACCGTAGCACCTTTTTCTTC
* ** ** *
766481 CCAAAGTCCATGACTCTGTGGCAC-CTTTTT-ATTTTCAAAGTCCACAACTCTGTGGCACCCTTT
64 CCAAAGCCCACAACTCCATGGCACTCTTTTTCATTTT--AAGTCCACAACTCCGTGGCACCCTTT
766544 T
127 T
*
766545 AAGTCCACAACTCCGTGGCACCCTTTTTCTTTTTAAAGCCCACAACACCGTAGCACCTTTTTCTT
1 AAGTCCACAACTCCGTGGCA-CCTTTTTC-TTTT-AAGTCCACAACACCGTAGCACCTTTTTCTT
*** * * **
766610 TTTACAGCCCACAACTCCATGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACTTTTTT
63 CCCAAAGCCCACAACTCCATGGCACTCTTTTTCATTTTAAGTCCACAACTCCGTGGCACCCTTTT
* * * * * *
766675 TAGTCCACAACTCCGTGGCATCTTTTTCCTTTTAAGTCCACAACTCCATGGCACCTTGTTCCTT-
1 AAGTCCACAACTCCGTGGCACCTTTTT-CTTTTAAGTCCACAACACCGTAGCACCTT-TTTCTTC
** * * * * *
766739 -TTAAGCCCACAACTCCGTGGCA--CTATTTCTTTTTAAGTCCACAAGTCCATGGCATCTTTTTC
64 CCAAAGCCCACAACTCCATGGCACTCTTTTTCATTTTAAGTCCACAACTCCGTGGCA-C-----C
766801 CTTTT
123 CTTTT
* * * * *
766806 AAGTCCACAACTCCGCGTCACC-TTTTCTTTTTAAGTCCACGACTCCGTGGCAACCTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTC-TTTTAAGTCCACAACACCGTAGC-ACCTTT
766864 CCTATTTAAG
Statistics
Matches: 259, Mismatches: 46, Indels: 27
0.78 0.14 0.08
Matches are distributed among these distances:
125 28 0.11
126 1 0.00
127 19 0.07
128 20 0.08
129 33 0.13
130 116 0.45
131 38 0.15
132 4 0.02
ACGTcount: A:0.20, C:0.31, G:0.13, T:0.36
Consensus pattern (127 bp):
AAGTCCACAACTCCGTGGCACCTTTTTCTTTTAAGTCCACAACACCGTAGCACCTTTTTCTTCCC
AAAGCCCACAACTCCATGGCACTCTTTTTCATTTTAAGTCCACAACTCCGTGGCACCCTTTT
Found at i:766671 original size:25 final size:26
Alignment explanation
Indices: 766643--766700 Score: 89
Period size: 27 Copynumber: 2.2 Consensus size: 26
766633 ACTCTTTTTC
766643 CTTTTAAGTCCACAACTCCGTGGCACT
1 CTTTTAAGTCCACAACTCCGTGGCA-T
* *
766670 TTTTTTAGTCCACAACTCCGTGGCAT
1 CTTTTAAGTCCACAACTCCGTGGCAT
766696 CTTTT
1 CTTTT
766701 TCCTTTTAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 5 0.18
27 23 0.82
ACGTcount: A:0.19, C:0.29, G:0.14, T:0.38
Consensus pattern (26 bp):
CTTTTAAGTCCACAACTCCGTGGCAT
Found at i:766679 original size:27 final size:30
Alignment explanation
Indices: 766082--766917 Score: 304
Period size: 34 Copynumber: 25.9 Consensus size: 30
766072 CACGACTTAA
* *
766082 TGGCATCTTTTTTCTTTAAAGTCCACGACTCAG
1 TGGCATC-TTTTT-TTT-AAGTCCACAACTCCG
** * *
766115 TGGCATCTTTTCTTCAAAGTCCACGACTCAG
1 TGGCATCTTTT-TTTTAAGTCCACAACTCCG
** * *
766146 TGGCAATCTTTTCTTCAAAGTCCACGACTCAG
1 TGGC-ATCTTTT-TTTTAAGTCCACAACTCCG
* * * ** *
766178 TGGAAATCTCTTCTCAAAGTCCA-AGACTCAG
1 TGG-CATCTTTTTTTTAAGTCCACA-ACTCCG
* ** *
766209 TGGCATCTCTTTCCTAAGTCCA-AGACTCAG
1 TGGCATCTTTTTTTTAAGTCCACA-ACTCCG
* * *
766239 TGGCATCCTTTTCTTCTAAGTCCACGACTCAG
1 TGGCAT-CTTTT-TTTTAAGTCCACAACTCCG
* * **
766271 T-GCATCTTTTTTTCTTCAAAGTCTACGACTCAA
1 TGGCATC-TTTTTT-TT--AAGTCCACAACTCCG
** * **
766304 TGGCATCTTTTCTTCAAAGTCCACGACTCAA
1 TGGCATCTTTT-TTTTAAGTCCACAACTCCG
* * * *
766335 TAGCATCTTTTTTTCAAAGTCCACGACTCAG
1 TGGCATCTTTTTTT-TAAGTCCACAACTCCG
* * ** *
766366 TGGCAATCTCTTCTCCAAGTCCACAACTCAG
1 TGGC-ATCTTTTTTTTAAGTCCACAACTCCG
* * **
766397 TGGCATCTTTTTCTTCCCAAAGTCCACGACTTTG
1 TGGCATCTTTTT-TT---TAAGTCCACAACTCCG
* * *
766431 TGGCACTTTTTTCTTTTCATAGTCCACGACTTCG
1 TGGCA-TCTTTT-TTTT-A-AGTCCACAACTCCG
* ** *
766465 TGGCATCTTTTTCTTCCCAAAGTCCATGACTCTG
1 TGGCATCTTTTT-TT---TAAGTCCACAACTCCG
* *
766499 TGGCACCTTTTTATTTTCAAAGTCCACAACTCTG
1 TGGCATC-TTTT-TTTT--AAGTCCACAACTCCG
**
766533 TGGCA-C--CCTTTTAAGTCCACAACTCCG
1 TGGCATCTTTTTTTTAAGTCCACAACTCCG
* * *
766560 TGGCACCCTTTTTCTTTTTAAAGCCCACAACACCG
1 TGGCA---TCTTT-TTTTT-AAGTCCACAACTCCG
* * * *
766595 TAGCACCTTTTTCTTTTTACAGCCCACAACTCCA
1 TGGCA--TCTTT-TTTTTA-AGTCCACAACTCCG
766629 TGGCACTCTTTTTCCTTTTAAGTCCACAACTCCG
1 TGGCA-TC-TTTT--TTTTAAGTCCACAACTCCG
766663 TGGCA-C-TTTTTTT-AGTCCACAACTCCG
1 TGGCATCTTTTTTTTAAGTCCACAACTCCG
*
766690 TGGCATCTTTTTCCTTTTAAGTCCACAACTCCA
1 TGGCATC-TTTT--TTTTAAGTCCACAACTCCG
* *
766723 TGGCACCTTGTTCCTTTTAAGCCCACAACTCCG
1 TGGCATCTT-TT--TTTTAAGTCCACAACTCCG
* * *
766756 TGGCACTATTTCTTTTTAAGTCCACAAGTCCA
1 TGGCA-TCTTT-TTTTTAAGTCCACAACTCCG
766788 TGGCATCTTTTTCCTTTTAAGTCCACAACTCCG
1 TGGCATC-TTTT--TTTTAAGTCCACAACTCCG
* * * *
766821 CGTCACCTTTTCTTTTTAAGTCCACGACTCCG
1 TGGCATC-TTT-TTTTTAAGTCCACAACTCCG
* * * *
766853 TGGCAACCTTTCCTATTTAAGCCCACACCTCCG
1 TGGC-ATCTTT--TTTTTAAGTCCACAACTCCG
*
766886 TGGCATTCCTTTTACTTATAAGTCCACAACTC
1 TGGCA-T-CTTTT--TTTTAAGTCCACAACTC
766918 TATGGCACCT
Statistics
Matches: 652, Mismatches: 89, Indels: 123
0.75 0.10 0.14
Matches are distributed among these distances:
27 38 0.06
28 5 0.01
29 4 0.01
30 46 0.07
31 114 0.17
32 122 0.19
33 134 0.21
34 151 0.23
35 36 0.06
36 2 0.00
ACGTcount: A:0.22, C:0.30, G:0.13, T:0.35
Consensus pattern (30 bp):
TGGCATCTTTTTTTTAAGTCCACAACTCCG
Found at i:766781 original size:65 final size:65
Alignment explanation
Indices: 766493--766929 Score: 407
Period size: 65 Copynumber: 6.8 Consensus size: 65
766483 AAAGTCCATG
* * * ** *
766493 ACTCTGTGGCACCTTTTTATTTTCAAAGTCCACAACTCTGTGGCA-C----CCTTTTAAGTCCAC
1 ACTCCGTGGCACCTTTTTCTTTT-TAAGTCCACAACTCCATGGCACCTTTTCCTTTTAAGCCCAC
766553 A
65 A
* * * * *
766554 ACTCCGTGGCACCCTTTTTCTTTTTAAAGCCCACAACACCGTAGCACCTTTTTCTTTTTACAGCC
1 ACTCCGTGGCA-CCTTTTTCTTTTT-AAGTCCACAACTCCATGGCACC-TTTTCCTTTTA-AGCC
766619 CACA
62 CACA
* * * *
766623 ACTCCATGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCA-C-TTT--TTTT-AGTCCAC
1 ACTCCGTGGCAC-CTTTTTCTTTTTAAGTCCACAACTCCATGGCACCTTTTCCTTTTAAGCCCAC
766683 A
65 A
* *
766684 ACTCCGTGGCATCTTTTTCCTTTTAAGTCCACAACTCCATGGCACCTTGTTCCTTTTAAGCCCAC
1 ACTCCGTGGCACCTTTTTCTTTTTAAGTCCACAACTCCATGGCACCTT-TTCCTTTTAAGCCCAC
766749 A
65 A
* * * *
766750 ACTCCGTGGCA-CTATTTCTTTTTAAGTCCACAAGTCCATGGCATCTTTTTCCTTTTAAGTCCAC
1 ACTCCGTGGCACCTTTTTCTTTTTAAGTCCACAACTCCATGGCA-CCTTTTCCTTTTAAGCCCAC
766814 A
65 A
* * * *
766815 ACTCCGCGTCACC-TTTTCTTTTTAAGTCCACGACTCCGTGGCAACC-TTTCCTATTTAAGCCCA
1 ACTCCGTGGCACCTTTTTCTTTTTAAGTCCACAACTCCATGGC-ACCTTTTCCT-TTTAAGCCCA
766878 CA
64 CA
* * * *
766880 CCTCCGTGGCATTCCTTTTAC-TTATAAGTCCACAACTCTATGGCACCTTT
1 ACTCCGTGGCA--CCTTTTTCTTTTTAAGTCCACAACTCCATGGCACCTTT
766930 AAGTCCAATA
Statistics
Matches: 312, Mismatches: 40, Indels: 42
0.79 0.10 0.11
Matches are distributed among these distances:
60 31 0.10
61 28 0.09
62 28 0.09
63 7 0.02
64 6 0.02
65 106 0.34
66 26 0.08
67 24 0.08
68 28 0.09
69 28 0.09
ACGTcount: A:0.21, C:0.32, G:0.12, T:0.35
Consensus pattern (65 bp):
ACTCCGTGGCACCTTTTTCTTTTTAAGTCCACAACTCCATGGCACCTTTTCCTTTTAAGCCCACA
Found at i:767027 original size:87 final size:88
Alignment explanation
Indices: 766920--767145 Score: 294
Period size: 87 Copynumber: 2.5 Consensus size: 88
766910 CACAACTCTA
* *
766920 TGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATTAGCATATTGGCACCTTGTCTTTAAGACCA
1 TGGCACC--TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTATCTTTAAGA-CA
*
766985 ATGTCGCTGGCCTTGAATCAGCACAT
63 ATGTCGCTAGCCTTGAATCAGCACAT
* * * *
767011 TGGCA-C-AAGTCCAATATCGTTGGCCTTGAATCAGCATATTGACACTTTATCTTTAGGACAATG
1 TGGCACCTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTATCTTTAAGACAATG
*
767074 TTGCTAGCCTTGAATCAGCACAT
66 TCGCTAGCCTTGAATCAGCACAT
* * *
767097 TGGCACCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC
1 TGGCACC--TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAC
767146 AAGCCTAATA
Statistics
Matches: 118, Mismatches: 13, Indels: 9
0.84 0.09 0.06
Matches are distributed among these distances:
86 31 0.26
87 47 0.40
90 35 0.30
91 5 0.04
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.30
Consensus pattern (88 bp):
TGGCACCTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTATCTTTAAGACAATG
TCGCTAGCCTTGAATCAGCACAT
Found at i:767036 original size:39 final size:39
Alignment explanation
Indices: 766977--767185 Score: 161
Period size: 39 Copynumber: 5.0 Consensus size: 39
766967 ACCTTGTCTT
766977 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC
1 TAAG-CCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC
* * * *
767017 -AAGTCCAATATCGTTGGCCTTGAATCAGCATATTGACAC
1 TAAG-CCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC
* * *
767056 TTTATCTTTAGGACAATGTTGCTAGCCTTGAATCAGCACATTGGCACC
1 --TA-----A-GCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-C
767104 TTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC
1 --TAAG-CCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC
* * * * *
767146 -AAGCCTAATATCGCTGGCCTTAAATTAGCATATTAGCAC
1 TAAGCC-AATGTCGCTGGCCTTGAATCAGCACATTGGCAC
767185 T
1 T
767186 TCCATCTTTA
Statistics
Matches: 136, Mismatches: 20, Indels: 26
0.75 0.11 0.14
Matches are distributed among these distances:
38 2 0.01
39 65 0.48
42 3 0.02
43 32 0.24
47 28 0.21
48 6 0.04
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.28
Consensus pattern (39 bp):
TAAGCCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC
Found at i:767156 original size:129 final size:131
Alignment explanation
Indices: 766974--767236 Score: 381
Period size: 129 Copynumber: 2.0 Consensus size: 131
766964 GGCACCTTGT
* *
766974 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACAAGTCCAATATCGTTGGCCTTG
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACAAGTCCAATATCGCTGGCCTTA
* ** *
767039 AATCAGCATATT-GACACTT-TATCTTTAGGA-CAATGTTGCTAGCCTTGAATCAGCACATTGGC
66 AATCAGCATATTAG-CACTTCCATCTTTAAAATCAATGTTGCTAGCCTGGAATCAGCACATTGGC
767101 AC
130 AC
767103 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACAAG-CCTAATATCGCTGGCCTT
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACAAGTCC-AATATCGCTGGCCTT
* * * * *
767167 AAATTAGCATATTAGCACTTCCATCTTTAAAATCGATGTTGTTGGCCTGGAATCATCACATTGGC
65 AAATCAGCATATTAGCACTTCCATCTTTAAAATCAATGTTGCTAGCCTGGAATCAGCACATTGGC
767232 AC
130 AC
767234 CTT
1 CTT
767237 AACCATCTTT
Statistics
Matches: 119, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
128 2 0.02
129 76 0.64
130 9 0.08
131 32 0.27
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (131 bp):
CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACAAGTCCAATATCGCTGGCCTTA
AATCAGCATATTAGCACTTCCATCTTTAAAATCAATGTTGCTAGCCTGGAATCAGCACATTGGCA
C
Found at i:768010 original size:14 final size:14
Alignment explanation
Indices: 767991--768019 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
767981 AATTCATGAC
767991 TTTTTAGAATATCA
1 TTTTTAGAATATCA
768005 TTTTTAGAATATCA
1 TTTTTAGAATATCA
768019 T
1 T
768020 GACTTTTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.07, G:0.07, T:0.52
Consensus pattern (14 bp):
TTTTTAGAATATCA
Found at i:772864 original size:96 final size:97
Alignment explanation
Indices: 772780--772956 Score: 248
Period size: 97 Copynumber: 1.8 Consensus size: 97
772770 AATTTGAACG
* * * *
772780 AAAATAAGATTTAAACCTGGATAATTTTAA-AAAGGGGTTAGAATATCCCTTCGAAAGAATGGGG
1 AAAATAAAATTTAAACCTGGACAAGTTTAACAAAGGGGTTAGAATATCCCCTCGAAAGAATGGGG
772844 TTGGAGTATCCCCGATGATGACAATTCAGACA
66 TTGGAGTATCCCCGATGATGACAATTCAGACA
* * * * * * *
772876 AAAATAAAATTTAAATCTTGACGAGTTTAACAATGGGGTTGGAGTATCCCCTCGGAAGAATGGGG
1 AAAATAAAATTTAAACCTGGACAAGTTTAACAAAGGGGTTAGAATATCCCCTCGAAAGAATGGGG
772941 TTGGAGTATCCCCGAT
66 TTGGAGTATCCCCGAT
772957 AGAATTTTGA
Statistics
Matches: 69, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
96 24 0.35
97 45 0.65
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.27
Consensus pattern (97 bp):
AAAATAAAATTTAAACCTGGACAAGTTTAACAAAGGGGTTAGAATATCCCCTCGAAAGAATGGGG
TTGGAGTATCCCCGATGATGACAATTCAGACA
Found at i:775360 original size:20 final size:19
Alignment explanation
Indices: 775309--775368 Score: 84
Period size: 19 Copynumber: 3.1 Consensus size: 19
775299 CATTATGCTT
*
775309 TGTATATTGTATCGATACA
1 TGTACATTGTATCGATACA
* *
775328 TGTTCACTGTATCGATACA
1 TGTACATTGTATCGATACA
775347 TGTACAATTGTATCGATACA
1 TGTAC-ATTGTATCGATACA
775367 TG
1 TG
775369 AAACTAGCAA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
19 20 0.57
20 15 0.43
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.38
Consensus pattern (19 bp):
TGTACATTGTATCGATACA
Found at i:777034 original size:3 final size:3
Alignment explanation
Indices: 777019--777055 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
777009 AACAATCAAA
*
777019 GAT GAT GAA GAT GAT GAT GAT GAT GAT GAT GAT GAT G
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G
777056 GTGACTCGGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.35, C:0.00, G:0.35, T:0.30
Consensus pattern (3 bp):
GAT
Found at i:781560 original size:13 final size:13
Alignment explanation
Indices: 781542--781580 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
781532 ACAATATTTT
781542 TTGTATCAATACA
1 TTGTATCAATACA
* *
781555 TTGTATCGATATA
1 TTGTATCAATACA
*
781568 TTGTTTCAATACA
1 TTGTATCAATACA
781581 AGGATTACTA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.33, C:0.13, G:0.10, T:0.44
Consensus pattern (13 bp):
TTGTATCAATACA
Found at i:785365 original size:32 final size:32
Alignment explanation
Indices: 785320--785397 Score: 129
Period size: 32 Copynumber: 2.4 Consensus size: 32
785310 TACAGTGAAG
*
785320 AATGTATCGATACATTTAGATTAGAAACCCAT
1 AATGTATCGATACATTTAGATTAAAAACCCAT
* *
785352 AATGTATCAATACATTTGGATTAAAAACCCAT
1 AATGTATCGATACATTTAGATTAAAAACCCAT
785384 AATGTATCGATACA
1 AATGTATCGATACA
785398 ATAAAGAATG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 42 1.00
ACGTcount: A:0.42, C:0.15, G:0.12, T:0.31
Consensus pattern (32 bp):
AATGTATCGATACATTTAGATTAAAAACCCAT
Found at i:785396 original size:84 final size:83
Alignment explanation
Indices: 785267--785449 Score: 258
Period size: 84 Copynumber: 2.2 Consensus size: 83
785257 GATACATTGA
* * * *
785267 AGAATGTATCAATACATTTGGGTCAAAACCCAGAATGTATTGATACAGTGAAGAATGTATCGATA
1 AGAATGTATCAATACATTTGGGTAAAAACCCAGAATGTATCGATACAATAAAGAATGTATCGATA
* *
785332 CATTTAGATTAGAAACCC
66 CATTTACATTAAAAACCC
* * *
785350 ATAATGTATCAATACATTTGGATTAAAAACCCATAATGTATCGATACAATAAAGAATGTATCGAT
1 AGAATGTATCAATACATTTGG-GTAAAAACCCAGAATGTATCGATACAATAAAGAATGTATCGAT
*
785415 ACATTTACATTAAAAATCC
65 ACATTTACATTAAAAACCC
*
785434 AGAATGTATCGATACA
1 AGAATGTATCAATACA
785450 ATAAAAATGT
Statistics
Matches: 87, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
83 20 0.23
84 67 0.77
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (83 bp):
AGAATGTATCAATACATTTGGGTAAAAACCCAGAATGTATCGATACAATAAAGAATGTATCGATA
CATTTACATTAAAAACCC
Found at i:785408 original size:52 final size:51
Alignment explanation
Indices: 785352--785471 Score: 186
Period size: 52 Copynumber: 2.3 Consensus size: 51
785342 AGAAACCCAT
* ** *
785352 AATGTATCAATACATTTGGATTAAAAACCCATAATGTATCGATACAATAAA
1 AATGTATCGATACATTTACATTAAAAACCCAGAATGTATCGATACAATAAA
*
785403 GAATGTATCGATACATTTACATTAAAAATCCAGAATGTATCGATACAATAAA
1 -AATGTATCGATACATTTACATTAAAAACCCAGAATGTATCGATACAATAAA
785455 AATGTATCGATACATTT
1 AATGTATCGATACATTT
785472 TCTTTCCAGA
Statistics
Matches: 63, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
51 17 0.27
52 46 0.73
ACGTcount: A:0.45, C:0.13, G:0.11, T:0.31
Consensus pattern (51 bp):
AATGTATCGATACATTTACATTAAAAACCCAGAATGTATCGATACAATAAA
Found at i:785538 original size:20 final size:20
Alignment explanation
Indices: 785509--785580 Score: 90
Period size: 20 Copynumber: 3.5 Consensus size: 20
785499 ACAAGGTCCA
* *
785509 GTATCAATACAGTCACTTAT
1 GTATCGATACATTCACTTAT
785529 GTATCGATACATTCACTTAT
1 GTATCGATACATTCACTTAT
* * *
785549 GTATCGAGACATTAACTTGTT
1 GTATCGATACATTCACTT-AT
785570 GTATCGATACA
1 GTATCGATACA
785581 AATTATAGAA
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
20 34 0.76
21 11 0.24
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (20 bp):
GTATCGATACATTCACTTAT
Found at i:787334 original size:80 final size:77
Alignment explanation
Indices: 787250--787556 Score: 273
Period size: 80 Copynumber: 3.9 Consensus size: 77
787240 ATCCCCTCGA
* * * *
787250 AGATAGTGGGATTGGAGTCTCTTTAGAGATGAAAAAATTGATGTTTTGGAAGTAAAGAGAGGGTT
1 AGATAGTGGG-TTGAAGTATCCTTAGAGAT-AAAAAATTAATGTTTTGGAAGTAAA-AGAGGGTT
* *
787315 GGAGTATCCCCTAAG
63 GGAGTATCTCCTTAG
* * *
787330 AGATAGTAGGGTTGAAGTATCCTTAAAGATAAAAAATTTAATGTTTTGGAAATAAAAGTGGGCTT
1 AGATAGT-GGGTTGAAGTATCCTTAGAGATAAAAAA-TTAATGTTTTGGAAGTAAAAGAGGG-TT
*
787395 GGAGTATCTTCTTAG
63 GGAGTATCTCCTTAG
* * * * * *
787410 AGATAATGGGGCTGCAGTATCCCTGGAGATAAAAAATTCAATGTTTTGGAAGTAAAAATAGGGTT
1 AGATAGT-GGGTTGAAGTATCCTTAGAGATAAAAAATT-AATGTTTTGGAAGT-AAAAGAGGGTT
787475 GGAGTATCTCCTTAG
63 GGAGTATCTCCTTAG
* * * * *
787490 AGATAGTGAGGCT-AGAGTATGCTCAAAGATAAAAAATT--TG-TTTGGACA-TAAAAATAGGGT
1 AGATAGTG-GGTTGA-AGTATCCTTAGAGATAAAAAATTAATGTTTTGGA-AGT-AAAAGAGGGT
787550 TGGAGTA
62 TGGAGTA
787557 CCTTTTCAGA
Statistics
Matches: 191, Mismatches: 28, Indels: 20
0.80 0.12 0.08
Matches are distributed among these distances:
76 25 0.13
77 3 0.02
79 14 0.07
80 139 0.73
81 10 0.05
ACGTcount: A:0.36, C:0.08, G:0.27, T:0.30
Consensus pattern (77 bp):
AGATAGTGGGTTGAAGTATCCTTAGAGATAAAAAATTAATGTTTTGGAAGTAAAAGAGGGTTGGA
GTATCTCCTTAG
Found at i:789185 original size:97 final size:97
Alignment explanation
Indices: 789047--789250 Score: 252
Period size: 97 Copynumber: 2.1 Consensus size: 97
789037 ACAAGGTTGG
* * * * *
789047 AGTATCCCCTCGGAGGAATAGGGCTGGAGTATCACTAACGATGATGATTT-GAGCAAAAATAAGA
1 AGTATCCCCTCAGAGGAATAGGGCTGGAATATCACTAACGATCATAATTTAG-GCAAAAATAAAA
* *
789111 TTTAAATTTTGA-GAAGTTTAAAAGTGAGGTTAA
65 TTTAAATCTTGATG-AGTTTAAAAGCGAGGTTAA
* * *
789144 AGTATCCCCTCAGAGGAATGGGGTTGGAATATC-CTCGACGATCATAATTTAGGCAAAAATAAAA
1 AGTATCCCCTCAGAGGAATAGGGCTGGAATATCACT-AACGATCATAATTTAGGCAAAAATAAAA
* *
789208 TTTAAATCTTGATGAGTTTAAAAGCGGGGTTAG
65 TTTAAATCTTGATGAGTTTAAAAGCGAGGTTAA
789241 AGTATCCCCT
1 AGTATCCCCT
789251 TGGGAGAATA
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
96 2 0.02
97 88 0.96
98 2 0.02
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (97 bp):
AGTATCCCCTCAGAGGAATAGGGCTGGAATATCACTAACGATCATAATTTAGGCAAAAATAAAAT
TTAAATCTTGATGAGTTTAAAAGCGAGGTTAA
Found at i:792445 original size:20 final size:20
Alignment explanation
Indices: 792420--792504 Score: 71
Period size: 20 Copynumber: 3.7 Consensus size: 20
792410 TTTTACCCAG
792420 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
792440 ATGTATCGATACATTCTATTTTTATACTTA
1 ATGTATCGAT--A--C-A-TTTT-T-C--A
792470 GATGTATCGATACATTTTTCA
1 -ATGTATCGATACATTTTTCA
792491 ATGTATCGATACAT
1 ATGTATCGATACAT
792505 CTAGTTAACT
Statistics
Matches: 54, Mismatches: 0, Indels: 22
0.71 0.00 0.29
Matches are distributed among these distances:
20 24 0.44
21 1 0.02
22 1 0.02
23 1 0.02
24 2 0.04
25 5 0.09
26 5 0.09
27 2 0.04
28 1 0.02
29 1 0.02
30 1 0.02
31 10 0.19
ACGTcount: A:0.31, C:0.14, G:0.11, T:0.45
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:792456 original size:51 final size:51
Alignment explanation
Indices: 792396--792504 Score: 191
Period size: 51 Copynumber: 2.1 Consensus size: 51
792386 TACATGCATT
*
792396 GATACATTCTATTTTTTTACCCAGATGTATCGATACATTTTTCAATGTATC
1 GATACATTCTATTTTTATACCCAGATGTATCGATACATTTTTCAATGTATC
**
792447 GATACATTCTATTTTTATACTTAGATGTATCGATACATTTTTCAATGTATC
1 GATACATTCTATTTTTATACCCAGATGTATCGATACATTTTTCAATGTATC
792498 GATACAT
1 GATACAT
792505 CTAGTTAACT
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 55 1.00
ACGTcount: A:0.29, C:0.16, G:0.10, T:0.45
Consensus pattern (51 bp):
GATACATTCTATTTTTATACCCAGATGTATCGATACATTTTTCAATGTATC
Found at i:796447 original size:79 final size:79
Alignment explanation
Indices: 796362--796946 Score: 636
Period size: 79 Copynumber: 7.4 Consensus size: 79
796352 GAGCATCCTT
* * ** * **
796362 GAGATGAAAAATTTAATATTTTTGAAATAAAAATGGGGTTGGAGTATCCCCTCAGAAATAATGGG
1 GAGATGAAAAATTTAATATTTTGGAGATAAAAGCGGGGTTGGAGTATCCCCTCAAAAATAACAGG
* *
796427 GTTGAAGCATCCCC
66 GTTGGAGTATCCCC
* ** * * * **
796441 GAGATGAAAATTTTAATATTTTTTAAATAAAAACGGGGTTAGAGTATCCCCTCAAAAATAATGGG
1 GAGATGAAAAATTTAATATTTTGGAGATAAAAGCGGGGTTGGAGTATCCCCTCAAAAATAACAGG
* *
796506 GTTGGAGTGTCCCT
66 GTTGGAGTATCCCC
* ** *
796520 GAGATGAAAAATTTAATATTTTGGAGATAAAAACTAGGTTGGAGTATCCCCTAAAAAATAACAGG
1 GAGATGAAAAATTTAATATTTTGGAGATAAAAGCGGGGTTGGAGTATCCCCTCAAAAATAACAGG
*
796585 GTTGGAG-AGTCCTC
66 GTTGGAGTA-TCCCC
* *
796599 GAGATGAAAAATTTAATATTTTGGATATAAAAGCGGGGTTGGAGTATCCCCACAAAAATAAC-GT
1 GAGATGAAAAATTTAATATTTTGGAGATAAAAGCGGGGTTGGAGTATCCCCTCAAAAATAACAG-
* * * **
796663 GGTTAGAATGTCCTT
65 GGTTGGAGTATCCCC
* * ** * *
796678 TAGATGAAAAATTTAATATTTTAGAGATAAAAGCAAGGTTGGAGTATCCCCTTAGAAATAACAGG
1 GAGATGAAAAATTTAATATTTTGGAGATAAAAGCGGGGTTGGAGTATCCCCTCAAAAATAACAGG
*
796743 ATTGGAGTATCCCC
66 GTTGGAGTATCCCC
* *
796757 GAGATGAAACATTTAATATTTTGGAGATAAAAGCGGGGTTGGAGTATCCCCTCAGAAATAACAGG
1 GAGATGAAAAATTTAATATTTTGGAGATAAAAGCGGGGTTGGAGTATCCCCTCAAAAATAACAGG
* *
796822 ATTGGAGTATCCAC
66 GTTGGAGTATCCCC
* * * **
796836 GAGATGAAACATTTAATATTTTGGAGATAAAAGTGGGGTTAGAGTATCCCCTCAAAAATAGTAGG
1 GAGATGAAAAATTTAATATTTTGGAGATAAAAGCGGGGTTGGAGTATCCCCTCAAAAATAACAGG
* * *
796901 GTTGGAATGTCCAC
66 GTTGGAGTATCCCC
* * * *
796915 GAAATGAAGAAA-ATCATATTTTGGAAATAAAA
1 GAGATGAA-AAATTTAATATTTTGGAGATAAAA
796947 ACATCGATGA
Statistics
Matches: 435, Mismatches: 66, Indels: 10
0.85 0.13 0.02
Matches are distributed among these distances:
78 1 0.00
79 431 0.99
80 3 0.01
ACGTcount: A:0.38, C:0.12, G:0.23, T:0.28
Consensus pattern (79 bp):
GAGATGAAAAATTTAATATTTTGGAGATAAAAGCGGGGTTGGAGTATCCCCTCAAAAATAACAGG
GTTGGAGTATCCCC
Found at i:799007 original size:51 final size:51
Alignment explanation
Indices: 798915--799056 Score: 176
Period size: 51 Copynumber: 2.8 Consensus size: 51
798905 AAAAATGCCT
* * * * *
798915 GAATGTATCGATACATTGAGAAATATATCGATATATATAGGTTAAAACCTA
1 GAATGTATCGATACAATGAAAAATGTATCGATACATATAGGTTAAAACCCA
* * * *
798966 GAATATATTGATACAATGAAAAATGTATCGATACATCTAGGTTGAAACCCA
1 GAATGTATCGATACAATGAAAAATGTATCGATACATATAGGTTAAAACCCA
* * *
799017 AAATGTATCGATACAATGAAAAATGTATTGATACAAATAG
1 GAATGTATCGATACAATGAAAAATGTATCGATACATATAG
799057 TAAATGTATC
Statistics
Matches: 76, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
51 76 1.00
ACGTcount: A:0.45, C:0.11, G:0.15, T:0.29
Consensus pattern (51 bp):
GAATGTATCGATACAATGAAAAATGTATCGATACATATAGGTTAAAACCCA
Found at i:799041 original size:20 final size:20
Alignment explanation
Indices: 799016--799072 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 20
799006 GTTGAAACCC
799016 AAAATGTATCGATACAAT-G
1 AAAATGTATCGATACAATAG
*
799035 AAAAATGTATTGATACAAATAG
1 -AAAATGTATCGATAC-AATAG
*
799057 TAAATGTATCGATACA
1 AAAATGTATCGATACA
799073 TTTACTTATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
20 15 0.47
21 16 0.50
22 1 0.03
ACGTcount: A:0.49, C:0.09, G:0.14, T:0.28
Consensus pattern (20 bp):
AAAATGTATCGATACAATAG
Found at i:801542 original size:21 final size:21
Alignment explanation
Indices: 801503--801543 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
801493 AGCCATTAAT
801503 CTTTATGAAAATAACCTTTGC
1 CTTTATGAAAATAACCTTTGC
*
801524 CTTT-TGAAAATTAAGCTTTG
1 CTTTATGAAAA-TAACCTTTG
801544 AAACTTGTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.32, C:0.15, G:0.12, T:0.41
Consensus pattern (21 bp):
CTTTATGAAAATAACCTTTGC
Found at i:801789 original size:21 final size:20
Alignment explanation
Indices: 801740--801797 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
801730 AAAAAACACA
* *
801740 AAATGTATCGATACATTGAT
1 AAATGTATCGATACAATCAT
* *
801760 AACTGTATCGATACAATCCT
1 AAATGTATCGATACAATCAT
*
801780 AGAATGTATCGATGCAAT
1 A-AATGTATCGATACAAT
801798 TACTTGAGTA
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
20 17 0.55
21 14 0.45
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.31
Consensus pattern (20 bp):
AAATGTATCGATACAATCAT
Found at i:813429 original size:22 final size:21
Alignment explanation
Indices: 813389--813450 Score: 79
Period size: 22 Copynumber: 2.9 Consensus size: 21
813379 GGCGTCCTCC
* *
813389 ACAAAAAAAAAGAACAAACAA
1 ACAAAAAAAAAAAAAAAACAA
813410 ACAAAAAAACAAAAAAAAACAA
1 ACAAAAAAA-AAAAAAAAACAA
*
813432 ACAAAAGCAAAAAAAAAAA
1 ACAAAA-AAAAAAAAAAAA
813451 GGGTCTGGAT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
21 9 0.25
22 25 0.69
23 2 0.06
ACGTcount: A:0.84, C:0.13, G:0.03, T:0.00
Consensus pattern (21 bp):
ACAAAAAAAAAAAAAAAACAA
Found at i:813430 original size:26 final size:28
Alignment explanation
Indices: 813391--813450 Score: 90
Period size: 27 Copynumber: 2.2 Consensus size: 28
813381 CGTCCTCCAC
813391 AAAAAAAAAGAACAAAC-AAA-CAAAAA
1 AAAAAAAAAGAACAAACAAAAGCAAAAA
813417 AACAAAAAAA-AACAAACAAAAGCAAAAA
1 AA-AAAAAAAGAACAAACAAAAGCAAAAA
813445 AAAAAA
1 AAAAAA
813451 GGGTCTGGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
26 9 0.29
27 14 0.45
28 8 0.26
ACGTcount: A:0.85, C:0.12, G:0.03, T:0.00
Consensus pattern (28 bp):
AAAAAAAAAGAACAAACAAAAGCAAAAA
Found at i:814922 original size:28 final size:28
Alignment explanation
Indices: 814882--814964 Score: 139
Period size: 28 Copynumber: 3.0 Consensus size: 28
814872 CATTCCTCAC
814882 CCTTCAAAAGCCCACAAGTCAGTGGCAA
1 CCTTCAAAAGCCCACAAGTCAGTGGCAA
*
814910 CCTTCAAAAGCCCACAGGTCAGTGGCAA
1 CCTTCAAAAGCCCACAAGTCAGTGGCAA
* *
814938 CCTTCAAAAGCCCACAACTCTGTGGCA
1 CCTTCAAAAGCCCACAAGTCAGTGGCA
814965 TTTTTTTCCT
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 51 1.00
ACGTcount: A:0.33, C:0.34, G:0.18, T:0.16
Consensus pattern (28 bp):
CCTTCAAAAGCCCACAAGTCAGTGGCAA
Found at i:814996 original size:33 final size:33
Alignment explanation
Indices: 814949--815118 Score: 158
Period size: 33 Copynumber: 5.2 Consensus size: 33
814939 CTTCAAAAGC
*
814949 CCACAAC-TCTGTGGCATTTTTTTCCTTTTAAGT
1 CCACAACTTC-GTGGCACTTTTTTCCTTTTAAGT
814982 CCACAACTTCGTGGCAC------CCTTTTAAGT
1 CCACAACTTCGTGGCACTTTTTTCCTTTTAAGT
* * *
815009 CCACAACTCCGTGGCACCTTGTTTCTTTTTAAAG-
1 CCACAACTTCGTGGCA-CTTTTTTCCTTTT-AAGT
* ** *
815043 CCTACAACTCCGTGGCACTCAATTTCCTTTTAAGC
1 CC-ACAACTTCGTGGCACT-TTTTTCCTTTTAAGT
*
815078 CCATAACTTCGTGGCACTTTTTTCCTTTTAAGT
1 CCACAACTTCGTGGCACTTTTTTCCTTTTAAGT
815111 CCACAACT
1 CCACAACT
815119 CCATGGAACC
Statistics
Matches: 113, Mismatches: 12, Indels: 24
0.76 0.08 0.16
Matches are distributed among these distances:
27 25 0.22
28 1 0.01
33 32 0.28
34 28 0.25
35 27 0.24
ACGTcount: A:0.21, C:0.30, G:0.12, T:0.36
Consensus pattern (33 bp):
CCACAACTTCGTGGCACTTTTTTCCTTTTAAGT
Found at i:815010 original size:27 final size:27
Alignment explanation
Indices: 814972--815159 Score: 101
Period size: 27 Copynumber: 6.2 Consensus size: 27
814962 GCATTTTTTT
*
814972 CCTTTTAAGTCCACAACTTCGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
814999 CCTTTTAAGTCCACAACTCCGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
815026 CTTGTTTCTTTTTAAAG-CCTACAACTCCGTGGCACTC
1 C------C-TTTT-AAGTCC-ACAACTCCGTGGCA--C
* * *
815063 AATTTCCTTTTAAGCCCATAACTTCGTGGCAC
1 -----CCTTTTAAGTCCACAACTCCGTGGCAC
* *
815095 TTTTTTCCTTTTAAGTCCACAACTCCATGGAAC
1 ------CCTTTTAAGTCCACAACTCCGTGGCAC
*
815128 CCTTTTAAGTCCATAACTCCGTGGCA-
1 CCTTTTAAGTCCACAACTCCGTGGCAC
815154 CCTTTT
1 CCTTTT
815160 CTTTTTAAGT
Statistics
Matches: 130, Mismatches: 13, Indels: 37
0.72 0.07 0.21
Matches are distributed among these distances:
26 6 0.05
27 50 0.38
32 1 0.01
33 26 0.20
34 21 0.16
35 23 0.18
36 1 0.01
37 1 0.01
42 1 0.01
ACGTcount: A:0.22, C:0.31, G:0.13, T:0.35
Consensus pattern (27 bp):
CCTTTTAAGTCCACAACTCCGTGGCAC
Found at i:815023 original size:60 final size:60
Alignment explanation
Indices: 814949--815192 Score: 231
Period size: 60 Copynumber: 3.9 Consensus size: 60
814939 CTTCAAAAGC
* * *
814949 CCACAACTCTGTGGCATTTTTTTCCTTTTAAGTCCACAACTTCGTGGCACCCTTTTAAGT
1 CCACAACTCCGTGGCACTTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGT
* *
815009 CCACAACTCCGTGGCACCTTGTTTCTTTTTAAAG-CCTACAACTCCGTGGCACTCAATTTCCTTT
1 CCACAACTCCGTGGCA-CTTTTTTCCTTTT-AAGTCC-ACAACTCCGTGGCA--C-----CCTTT
*
815073 TAAGC
56 TAAGT
* * * *
815078 CCATAACTTCGTGGCACTTTTTTCCTTTTAAGTCCACAACTCCATGGAACCCTTTTAAGT
1 CCACAACTCCGTGGCACTTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGT
* * * ** * *
815138 CCATAACTCCGTGGCAC-CTTTTCTTTTTAAGTCCATGACTCTGTGGTACCCTTTT
1 CCACAACTCCGTGGCACTTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTT
815193 CCCTTTCAAG
Statistics
Matches: 152, Mismatches: 21, Indels: 23
0.78 0.11 0.12
Matches are distributed among these distances:
59 31 0.20
60 40 0.26
61 12 0.08
62 16 0.11
64 1 0.01
65 1 0.01
67 15 0.10
68 13 0.09
69 23 0.15
ACGTcount: A:0.20, C:0.30, G:0.13, T:0.37
Consensus pattern (60 bp):
CCACAACTCCGTGGCACTTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGT
Found at i:815074 original size:35 final size:34
Alignment explanation
Indices: 814999--815219 Score: 144
Period size: 34 Copynumber: 6.8 Consensus size: 34
814989 TTCGTGGCAC
*
814999 CCTTTTAAGTCCACAACTCCGTGGCAC-CTTGTTT
1 CCTTTTAAGTCCACAACTCCGTGGCACTC-TATTT
* *
815033 CTTTTTAAAG-CCTACAACTCCGTGGCACTCAATTT
1 CCTTTT-AAGTCC-ACAACTCCGTGGCACTCTATTT
* * * *
815068 CCTTTTAAGCCCATAACTTCGTGGCACT-TTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCACTCTATTT
* *
815101 CCTTTTAAGTCCACAACTCCATGG-A----A--C
1 CCTTTTAAGTCCACAACTCCGTGGCACTCTATTT
*
815128 CCTTTTAAGTCCATAACTCCGTGGCAC-CT-TTT
1 CCTTTTAAGTCCACAACTCCGTGGCACTCTATTT
* ** * * *
815160 CTTTTTAAGTCCATGACTCTGTGGTACCCT-TTT
1 CCTTTTAAGTCCACAACTCCGTGGCACTCTATTT
* * *
815193 CCCTTTCAAGCCCACACCTCCGTGGCA
1 -CCTTTTAAGTCCACAACTCCGTGGCA
815220 TCACTTTTTC
Statistics
Matches: 146, Mismatches: 29, Indels: 24
0.73 0.15 0.12
Matches are distributed among these distances:
27 22 0.15
28 1 0.01
32 24 0.16
33 28 0.19
34 42 0.29
35 28 0.19
36 1 0.01
ACGTcount: A:0.20, C:0.32, G:0.13, T:0.35
Consensus pattern (34 bp):
CCTTTTAAGTCCACAACTCCGTGGCACTCTATTT
Found at i:815091 original size:34 final size:34
Alignment explanation
Indices: 814999--815254 Score: 133
Period size: 34 Copynumber: 7.8 Consensus size: 34
814989 TTCGTGGCAC
* *
814999 CCTTTTAAGTCCACAACTCCGTGGCAC-CTTGTTT
1 CCTTTTAAGCCCACAACTCCGTGGCACTC-TATTT
* * *
815033 CTTTTTAAAGCCTACAACTCCGTGGCACTCAATTT
1 CCTTTT-AAGCCCACAACTCCGTGGCACTCTATTT
* * *
815068 CCTTTTAAGCCCATAACTTCGTGGCACT-TTTTT
1 CCTTTTAAGCCCACAACTCCGTGGCACTCTATTT
* * *
815101 CCTTTTAAGTCCACAACTCCATGG-A----A--C
1 CCTTTTAAGCCCACAACTCCGTGGCACTCTATTT
* *
815128 CCTTTTAAGTCCATAACTCCGTGGCAC-CT-TTT
1 CCTTTTAAGCCCACAACTCCGTGGCACTCTATTT
* * ** * * *
815160 CTTTTTAAGTCCATGACTCTGTGGTACCCT-TTT
1 CCTTTTAAGCCCACAACTCCGTGGCACTCTATTT
* * * *
815193 CCCTTTCAAGCCCACACCTCCGTGGCATCACTTTTT
1 -CCTTTTAAGCCCACAACTCCGTGGCA-CTCTATTT
* * * *
815229 CC-TGTAAGCCTACAAGTCGGTGGCAC
1 CCTTTTAAGCCCACAACTCCGTGGCAC
815255 CCCTTTCAAA
Statistics
Matches: 171, Mismatches: 39, Indels: 25
0.73 0.17 0.11
Matches are distributed among these distances:
27 22 0.13
28 1 0.01
32 24 0.14
33 29 0.17
34 59 0.35
35 32 0.19
36 4 0.02
ACGTcount: A:0.20, C:0.31, G:0.14, T:0.34
Consensus pattern (34 bp):
CCTTTTAAGCCCACAACTCCGTGGCACTCTATTT
Found at i:815225 original size:129 final size:132
Alignment explanation
Indices: 814945--815228 Score: 338
Period size: 129 Copynumber: 2.2 Consensus size: 132
814935 CAACCTTCAA
* * * *
814945 AAGCCCACAACTCTGTGGCAT---TTTTTTCCTTTTAAGTCCACAACTTCGTGGCACCCTTTTAA
1 AAGCCCACAACTCCGTGGCATCACTTTTTTCCTTTTAAGTCCACAACTCCATGGAACCCTTTTAA
815007 GTCCACAACTCCGTGGCACCTTGTTTCTTTTTAAAGCCTACAACTCCGTGGCACTCAATTTCCTT
66 GTCCACAACTCCGTGGCACCTTGTTTCTTTTTAAAGCCTACAACTCCGTGGCACTCAATTTCCTT
*
815072 TT
131 TC
* *
815074 AAGCCCATAACTTCGTGG---CACTTTTTTCCTTTTAAGTCCACAACTCCATGGAACCCTTTTAA
1 AAGCCCACAACTCCGTGGCATCACTTTTTTCCTTTTAAGTCCACAACTCCATGGAACCCTTTTAA
* ** * * **
815136 GTCCATAACTCCGTGGCACC-T-TTTCTTTTT-AAGTCC-ATGACTCTGTGGTAC-CCTTTTCCC
66 GTCCACAACTCCGTGGCACCTTGTTTCTTTTTAAAG-CCTACAACTCCGTGGCACTCAATTT-CC
815196 TTTC
129 TTTC
*
815200 AAGCCCACACCTCCGTGGCATCACTTTTT
1 AAGCCCACAACTCCGTGGCATCACTTTTT
815229 CCTGTAAGCC
Statistics
Matches: 130, Mismatches: 17, Indels: 16
0.80 0.10 0.10
Matches are distributed among these distances:
125 4 0.03
126 34 0.26
127 11 0.08
128 1 0.01
129 80 0.62
ACGTcount: A:0.20, C:0.31, G:0.13, T:0.36
Consensus pattern (132 bp):
AAGCCCACAACTCCGTGGCATCACTTTTTTCCTTTTAAGTCCACAACTCCATGGAACCCTTTTAA
GTCCACAACTCCGTGGCACCTTGTTTCTTTTTAAAGCCTACAACTCCGTGGCACTCAATTTCCTT
TC
Found at i:815274 original size:30 final size:28
Alignment explanation
Indices: 815234--815329 Score: 79
Period size: 28 Copynumber: 3.3 Consensus size: 28
815224 TTTTTCCTGT
*
815234 AAGCCTACAAGTCGGTGGCACCCCTTTCAA
1 AAGCCCACAAGT-GGTGGCA-CCCTTTCAA
*
815264 AAGCCCACAAGTGAGTGGCA-ACTTTCAA
1 AAGCCCACAAGTG-GTGGCACCCTTTCAA
* * * *
815292 AAGCACAAAAGTTGAT-GCAACCCTTTAAA
1 AAGCCCACAAG-TGGTGGC-ACCCTTTCAA
815321 AAGCCCACA
1 AAGCCCACA
815330 CAAGTTTGTG
Statistics
Matches: 53, Mismatches: 9, Indels: 9
0.75 0.13 0.13
Matches are distributed among these distances:
27 2 0.04
28 18 0.34
29 16 0.30
30 17 0.32
ACGTcount: A:0.36, C:0.28, G:0.18, T:0.18
Consensus pattern (28 bp):
AAGCCCACAAGTGGTGGCACCCTTTCAA
Found at i:815421 original size:49 final size:49
Alignment explanation
Indices: 815346--815863 Score: 330
Period size: 49 Copynumber: 10.9 Consensus size: 49
815336 TGTGGCATCT
* * * * * *
815346 TCTTCTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTAGTACCTTTA
1 TCTT-TAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTCA
*
815396 TCTTTAAGACCAATGTCACTGGCCTTGAATCAG--TA----CA--TT-A
1 TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTCA
* ** * * * * * *
815436 GC-ACAAGCCCAATATCGTTGGCCATGAATCAGCATATTGGCAGCTT-T
1 TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTCA
*
815483 TCTTTAAGACCAATGCCGCTGGCCTTGAATCAGCATATTGG------CA
1 TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTCA
* *
815526 -C---AAG-CTCAAT-TCGCTAGCCTTGAATCAGCATATGGGCACCTTCA
1 TCTTTAAGAC-CAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTCA
* * *
815570 TCTTTTAA-ACCGATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTAACCA
1 TC-TTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTT---CA
* * ** * *
815622 TTTTTAAGTCCAATGTCGCTAACCTTGAATCAGCACATTGGCATCTTCA
1 TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTCA
* ** * * *
815671 TCTTTAAGTCCGGTATTGCTAGCCTTGAATCAGCATATTGGCACCGTT-A
1 TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACC-TTCA
*
815720 TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCA
1 TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTCA
* * * ** * * *
815769 TCTTTAAGTCCGATATCATTGGCCTTGAATCAGGATATTGGCATCTTTA
1 TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTCA
* * * ** *
815818 ACATTCCTAAGCCCAATGTCACTGGCCTTGTCTCAGCACATTGGCA
1 TC-TT--TAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCA
815864 TTCTTCTTCA
Statistics
Matches: 364, Mismatches: 71, Indels: 64
0.73 0.14 0.13
Matches are distributed among these distances:
38 24 0.07
39 30 0.08
40 2 0.01
41 4 0.01
42 1 0.00
43 1 0.00
44 2 0.01
45 3 0.01
47 5 0.01
48 36 0.10
49 176 0.48
50 8 0.02
51 5 0.01
52 67 0.18
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (49 bp):
TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTCA
Found at i:815508 original size:87 final size:87
Alignment explanation
Indices: 815356--815613 Score: 331
Period size: 87 Copynumber: 3.0 Consensus size: 87
815346 TCTTCTAAGT
* * *
815356 CCAATATCGCTAGCCTTGAATCAGCATATTAGTACCTTTATCTTTAAGACCAATGTCACTGGCCT
1 CCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTT-TCTTTAAGACCAATGTCGCTGGCCT
* *
815421 TGAATCAGTACATTAGCACAAGC
65 TGAATCAGCACATTGGCACAAGC
* * * * *
815444 CCAATATCGTTGGCCATGAATCAGCATATTGGCAGCTTTTCTTTAAGACCAATGCCGCTGGCCTT
1 CCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTTCTTTAAGACCAATGTCGCTGGCCTT
*
815509 GAATCAGCATATTGGCACAAGC
66 GAATCAGCACATTGGCACAAGC
* * * * *
815531 TCAAT-TCGCTAGCCTTGAATCAGCATATGGGCACCTTCATCTTTTAA-ACCGATGTCGTTGGCC
1 CCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTT-TTC-TTTAAGACCAATGTCGCTGGCC
815594 TTGAATCAGCACATTGGCAC
64 TTGAATCAGCACATTGGCAC
815614 CTTAACCATT
Statistics
Matches: 146, Mismatches: 22, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
86 27 0.18
87 81 0.55
88 38 0.26
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (87 bp):
CCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTTCTTTAAGACCAATGTCGCTGGCCTT
GAATCAGCACATTGGCACAAGC
Found at i:815846 original size:150 final size:148
Alignment explanation
Indices: 815539--815863 Score: 350
Period size: 150 Copynumber: 2.2 Consensus size: 148
815529 GCTCAATTCG
* * *
815539 CTAGCCTTGAATCAGCATATGGGCACCTTCATCTTTTAAACCGATGTCGTTGGCCTTGAATCAGC
1 CTAGCCTTGAATCAGCATATTGGCACCTTCATCTTTTAAACCAATGTCGCTGGCCTTGAATCAGC
* * *
815604 ACATTGGCACCTTAACCATTTTTAAGTCCAATGTCGCTAACCTTGAATCAGCACATTGGCATCTT
66 ACATTGGCACCTT-A-CATCTTTAAGTCCAATATCACTAACCTTGAATCAGCACATTGGCATCTT
* * ** **
815669 CATCTTTAAGTCCGGTATTG
129 CAACTTTAAGCCCAATATCA
815689 CTAGCCTTGAATCAGCATATTGGCACCGTT-ATC-TTTAAGACCAATGTCGCTGGCCTTGAATCA
1 CTAGCCTTGAATCAGCATATTGGCACC-TTCATCTTTTAA-ACCAATGTCGCTGGCCTTGAATCA
* * ** * *
815752 GCACATTGGCACCTT-CATCTTTAAGTCCGATATCATTGGCCTTGAATCAGGATATTGGCATCTT
64 GCACATTGGCACCTTACATCTTTAAGTCCAATATCACTAACCTTGAATCAGCACATTGGCATCTT
* *
815816 TAACATTCCTAAGCCCAATGTCA
129 CAAC-TT--TAAGCCCAATATCA
* ** *
815839 CTGGCCTTGTCTCAGCACATTGGCA
1 CTAGCCTTGAATCAGCATATTGGCA
815864 TTCTTCTTCA
Statistics
Matches: 146, Mismatches: 24, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
147 42 0.29
148 2 0.01
149 5 0.03
150 95 0.65
151 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.32
Consensus pattern (148 bp):
CTAGCCTTGAATCAGCATATTGGCACCTTCATCTTTTAAACCAATGTCGCTGGCCTTGAATCAGC
ACATTGGCACCTTACATCTTTAAGTCCAATATCACTAACCTTGAATCAGCACATTGGCATCTTCA
ACTTTAAGCCCAATATCA
Found at i:816289 original size:13 final size:13
Alignment explanation
Indices: 816271--816296 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
816261 ACACCAAAGT
816271 ATGTATCGATACA
1 ATGTATCGATACA
816284 ATGTATCGATACA
1 ATGTATCGATACA
816297 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:816294 original size:33 final size:33
Alignment explanation
Indices: 816252--816316 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
816242 TAGCCAAACT
* *
816252 TGTATCGATACAC-CAAAGTATGTATCGATACAA
1 TGTATCGATACACAAAAAAT-TGTATCGATACAA
816285 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
816317 CAAAAAATTG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 25 0.86
34 4 0.14
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:816310 original size:20 final size:20
Alignment explanation
Indices: 816285--816336 Score: 104
Period size: 20 Copynumber: 2.6 Consensus size: 20
816275 ATCGATACAA
816285 TGTATCGATACACAAAAAAT
1 TGTATCGATACACAAAAAAT
816305 TGTATCGATACACAAAAAAT
1 TGTATCGATACACAAAAAAT
816325 TGTATCGATACA
1 TGTATCGATACA
816337 TTGGCTTGTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.46, C:0.15, G:0.12, T:0.27
Consensus pattern (20 bp):
TGTATCGATACACAAAAAAT
Found at i:822670 original size:20 final size:20
Alignment explanation
Indices: 822627--822672 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
822617 AAATCTTTTG
822627 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
822648 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
822668 CAAAA
1 CAAAA
822673 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:826641 original size:20 final size:20
Alignment explanation
Indices: 826616--826670 Score: 101
Period size: 20 Copynumber: 2.8 Consensus size: 20
826606 TTTTGACCTA
826616 AATGTATCGATACATTCTTC
1 AATGTATCGATACATTCTTC
*
826636 AATGTATCAATACATTCTTC
1 AATGTATCGATACATTCTTC
826656 AATGTATCGATACAT
1 AATGTATCGATACAT
826671 GTAGGCAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.35, C:0.18, G:0.09, T:0.38
Consensus pattern (20 bp):
AATGTATCGATACATTCTTC
Found at i:830654 original size:11 final size:11
Alignment explanation
Indices: 830638--830663 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
830628 TGGAAAACGA
830638 TTTTTTCATAT
1 TTTTTTCATAT
830649 TTTTTTCATAT
1 TTTTTTCATAT
830660 TTTT
1 TTTT
830664 AAATCGACCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.15, C:0.08, G:0.00, T:0.77
Consensus pattern (11 bp):
TTTTTTCATAT
Found at i:841982 original size:21 final size:21
Alignment explanation
Indices: 841955--842011 Score: 89
Period size: 21 Copynumber: 2.7 Consensus size: 21
841945 GGCGTTCTCC
841955 ACAAAAAAA-AAAGAACAAACAA
1 ACAAAAAAACAAA-AA-AAACAA
841977 ACAAAAAAACAAAAAAAACAA
1 ACAAAAAAACAAAAAAAACAA
841998 ACAAAAAAACAAAA
1 ACAAAAAAACAAAA
842012 GCAAAAAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
21 20 0.59
22 11 0.32
23 3 0.09
ACGTcount: A:0.84, C:0.14, G:0.02, T:0.00
Consensus pattern (21 bp):
ACAAAAAAACAAAAAAAACAA
Found at i:841990 original size:29 final size:27
Alignment explanation
Indices: 841958--842023 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
841948 GTTCTCCACA
841958 AAAAAAAAAGAACAAACAAACAAAAAAAC
1 AAAAAAAAAGAACAAA-AAA-AAAAAAAC
* *
841987 AAAAAAAACA-AACAAAAAAACAAAAGC
1 AAAAAAAA-AGAACAAAAAAAAAAAAAC
842014 AAAAAAAAAG
1 AAAAAAAAAG
842024 GGGTTCGGAT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
26 1 0.03
27 14 0.42
28 3 0.09
29 14 0.42
30 1 0.03
ACGTcount: A:0.83, C:0.12, G:0.05, T:0.00
Consensus pattern (27 bp):
AAAAAAAAAGAACAAAAAAAAAAAAAC
Found at i:842011 original size:8 final size:8
Alignment explanation
Indices: 841957--842020 Score: 60
Period size: 8 Copynumber: 7.8 Consensus size: 8
841947 CGTTCTCCAC
841957 AAAAAA-A
1 AAAAAACA
*
841964 AAAGAACA
1 AAAAAACA
*
841972 AACAAACA
1 AAAAAACA
841980 AAAAAACAA
1 AAAAAAC-A
841989 AAAAAACA
1 AAAAAACA
841997 AACAAAA-A
1 AA-AAAACA
842005 AACAAAAGCA
1 AA-AAAA-CA
842015 AAAAAA
1 AAAAAA
842021 AAGGGGTTCG
Statistics
Matches: 48, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
7 5 0.10
8 24 0.50
9 16 0.33
10 3 0.06
ACGTcount: A:0.84, C:0.12, G:0.03, T:0.00
Consensus pattern (8 bp):
AAAAAACA
Found at i:843286 original size:28 final size:28
Alignment explanation
Indices: 843235--843367 Score: 169
Period size: 28 Copynumber: 4.7 Consensus size: 28
843225 CATTCCTCAC
*
843235 CCTTCAAAAGCCCACAAGTTAGTGGCAA
1 CCTTCAAAAGCCCACAAGTCAGTGGCAA
** * *
843263 CCTTCAAAAGCTTACAGGTCAGTGGCAT
1 CCTTCAAAAGCCCACAAGTCAGTGGCAA
* *
843291 CTTTTTC-AAAGCCCACAAGTTAGTGGCAA
1 C--CTTCAAAAGCCCACAAGTCAGTGGCAA
*
843320 CCTTCAAAAGCCCACAAGTCAGAGGCAA
1 CCTTCAAAAGCCCACAAGTCAGTGGCAA
843348 CCTTCAAAAGCCCACAAGTC
1 CCTTCAAAAGCCCACAAGTC
843368 CATGGTATCT
Statistics
Matches: 88, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
27 3 0.03
28 64 0.73
29 18 0.20
30 3 0.03
ACGTcount: A:0.34, C:0.29, G:0.17, T:0.20
Consensus pattern (28 bp):
CCTTCAAAAGCCCACAAGTCAGTGGCAA
Found at i:843415 original size:27 final size:27
Alignment explanation
Indices: 843382--843603 Score: 111
Period size: 27 Copynumber: 7.2 Consensus size: 27
843372 GTATCTTTTT
843382 CCTTTTAAGTCCACAACTCCGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
*
843409 CCTTTTAACTCCACAACTCCGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
*
843436 CTTTTTTCTTTTCAAAGCCCACAACTCCGTGGCACAC
1 C------CTTTT--AAGTCCACAACTCCGTGG--CAC
* *
843473 TTTTCCTTTTAAGCCCACAACTCTGTGGCACTC
1 ----CCTTTTAAGTCCACAACTCCGTGGCA--C
* *
843506 TTTTTTCCTTTTAAGTCCATAACTCTGTGGCAC
1 ------CCTTTTAAGTCCACAACTCCGTGGCAC
*
843539 CCTTTTAAGTCCACAACTTCGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
** *
843566 CTTTTCTTTTTAAGTCCATGACTCTGTGGCAC
1 C----C-TTTTAAGTCCACAACTCCGTGGCAC
843598 CCTTTT
1 CCTTTT
843604 GCCTTTTAAG
Statistics
Matches: 159, Mismatches: 13, Indels: 46
0.73 0.06 0.21
Matches are distributed among these distances:
27 56 0.35
28 1 0.01
31 3 0.02
32 22 0.14
33 24 0.15
35 49 0.31
37 3 0.02
41 1 0.01
ACGTcount: A:0.19, C:0.32, G:0.13, T:0.36
Consensus pattern (27 bp):
CCTTTTAAGTCCACAACTCCGTGGCAC
Found at i:843458 original size:35 final size:34
Alignment explanation
Indices: 843410--843654 Score: 174
Period size: 35 Copynumber: 7.4 Consensus size: 34
843400 CCGTGGCACC
843410 CTTTTAA-CTCCACAACTCCGTGGCAC-CTTTTTT
1 CTTTTAAGC-CCACAACTCCGTGGCACACTTTTTT
*
843443 CTTTTCAAAGCCCACAACTCCGTGGCACAC-TTTTC
1 CTTTT--AAGCCCACAACTCCGTGGCACACTTTTTT
* *
843478 CTTTTAAGCCCACAACTCTGTGGCACTCTTTTTT
1 CTTTTAAGCCCACAACTCCGTGGCACACTTTTTT
* * *
843512 CCTTTTAAGTCCATAACTCTGTGGCAC-C------
1 -CTTTTAAGCCCACAACTCCGTGGCACACTTTTTT
* * *
843540 CTTTTAAGTCCACAACTTCGTGGCAC-CTTTTCT
1 CTTTTAAGCCCACAACTCCGTGGCACACTTTTTT
* ** * * **
843573 -TTTTAAGTCCATGACTCTGTGGCACCCTTTTGC
1 CTTTTAAGCCCACAACTCCGTGGCACACTTTTTT
* *
843606 CTTTTAAGCCCACACCTCCGTGGCATC-CCTTTTT
1 CTTTTAAGCCCACAACTCCGTGGCA-CACTTTTTT
* *
843640 CCTGTAAGCCCACAA
1 CTTTTAAGCCCACAA
843655 GTCGATGGCA
Statistics
Matches: 171, Mismatches: 26, Indels: 29
0.76 0.12 0.13
Matches are distributed among these distances:
27 24 0.14
32 21 0.12
33 31 0.18
34 40 0.23
35 53 0.31
36 2 0.01
ACGTcount: A:0.19, C:0.33, G:0.13, T:0.35
Consensus pattern (34 bp):
CTTTTAAGCCCACAACTCCGTGGCACACTTTTTT
Found at i:843491 original size:68 final size:66
Alignment explanation
Indices: 843355--843640 Score: 249
Period size: 62 Copynumber: 4.4 Consensus size: 66
843345 CAACCTTCAA
* * * * * * *
843355 AAGCCCACAAGTCCATGGTATCTTTTTCCTTTTAAGTCCACAACTCCGTGG--CAC----CCTTT
1 AAGCCCACAACTCCGTGGCACCTTTTTTCTTTTAAGTCCATAACTCTGTGGCACACTTTTCCTTT
843414 T
66 T
* * *
843415 AA-CTCCACAACTCCGTGGCACCTTTTTTCTTTTCAAAGCCCACAACTCCGTGGCACACTTTTCC
1 AAGC-CCACAACTCCGTGGCACCTTTTTTCTTTT--AAGTCCATAACTCTGTGGCACACTTTTCC
843479 TTTT
63 TTTT
*
843483 AAGCCCACAACTCTGTGGCACTCTTTTTTCCTTTTAAGTCCATAACTCTGTGG--CAC----CCT
1 AAGCCCACAACTCCGTGGCAC-CTTTTTT-CTTTTAAGTCCATAACTCTGTGGCACACTTTTCCT
843542 TTT
64 TTT
* * * * *
843545 AAGTCCACAACTTCGTGGCACCTTTTCT-TTTTAAGTCCATGACTCTGTGGCACCCTTTTGCCTT
1 AAGCCCACAACTCCGTGGCACCTTTTTTCTTTTAAGTCCATAACTCTGTGGCACACTTTT-CCTT
843609 TT
65 TT
* *
843611 AAGCCCACACCTCCGTGGCATCCCTTTTTC
1 AAGCCCACAACTCCGTGGCA-CCTTTTTTC
843641 CTGTAAGCCC
Statistics
Matches: 184, Mismatches: 21, Indels: 34
0.77 0.09 0.14
Matches are distributed among these distances:
59 22 0.12
60 26 0.14
61 8 0.04
62 41 0.22
64 3 0.02
66 26 0.14
67 6 0.03
68 39 0.21
69 8 0.04
70 5 0.03
ACGTcount: A:0.19, C:0.33, G:0.13, T:0.35
Consensus pattern (66 bp):
AAGCCCACAACTCCGTGGCACCTTTTTTCTTTTAAGTCCATAACTCTGTGGCACACTTTTCCTTT
T
Found at i:843603 original size:94 final size:95
Alignment explanation
Indices: 843454--843638 Score: 248
Period size: 94 Copynumber: 2.0 Consensus size: 95
843444 TTTTCAAAGC
* *
843454 CCACAACTCCGTGGCACACTTTTCCTTTTAAGCCCACAACTCTGTGGCACTCTTTTTTCCTTTTA
1 CCACAACTCCGTGGCACACTTTTCCTTTTAAGCCCACAACTCTGTGGCAC-CCTTTTGCCTTTTA
* * *
843519 AGTCCATAACTCTGTGGCA-CCCTTTTAAGT
65 AGCCCACAACTCCGTGGCATCCCTTTTAAGT
* * * **
843549 CCACAACTTCGTGGCAC-CTTTTCTTTTTAAGTCCATGACTCTGTGGCACCCTTTTGCCTTTTAA
1 CCACAACTCCGTGGCACACTTTTCCTTTTAAGCCCACAACTCTGTGGCACCCTTTTGCCTTTTAA
*
843613 GCCCACACCTCCGTGGCATCCCTTTT
66 GCCCACAACTCCGTGGCATCCCTTTT
843639 TCCTGTAAGC
Statistics
Matches: 78, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
93 27 0.35
94 35 0.45
95 16 0.21
ACGTcount: A:0.18, C:0.33, G:0.14, T:0.36
Consensus pattern (95 bp):
CCACAACTCCGTGGCACACTTTTCCTTTTAAGCCCACAACTCTGTGGCACCCTTTTGCCTTTTAA
GCCCACAACTCCGTGGCATCCCTTTTAAGT
Found at i:843629 original size:34 final size:32
Alignment explanation
Indices: 843378--843653 Score: 159
Period size: 35 Copynumber: 8.6 Consensus size: 32
843368 CATGGTATCT
*
843378 TTTTCCTTTTAAGTCCACAACTCCGTGGCA--C
1 TTTTCCTTTTAAGCCCAC-ACTCCGTGGCACCC
*
843409 ----CCTTTTAA-CTCCACAACTCCGTGGCACCT
1 TTTTCCTTTTAAGC-CCAC-ACTCCGTGGCACCC
* *
843438 TTTTTCTTTTCAAAGCCCACAACTCCGTGGCACAC
1 TTTTCCTTTT--AAGCCCAC-ACTCCGTGGCACCC
* *
843473 TTTTCCTTTTAAGCCCACAACTCTGTGGCACTCTT
1 TTTTCCTTTTAAGCCCAC-ACTCCGTGGCAC-C-C
* * *
843508 TTTTCCTTTTAAGTCCATAACTCTGTGGCA--C
1 TTTTCCTTTTAAGCCCA-CACTCCGTGGCACCC
* *
843539 ----CCTTTTAAGTCCACAACTTCGTGGCA-CC
1 TTTTCCTTTTAAGCCCAC-ACTCCGTGGCACCC
* * * *
843567 TTTTCTTTTTAAGTCCATGACTCTGTGGCACCC
1 TTTTCCTTTTAAGCCCA-CACTCCGTGGCACCC
843600 TTTTGCCTTTTAAGCCCACACCTCCGTGGCATCCC
1 TTTT-CCTTTTAAGCCCACA-CTCCGTGGCA-CCC
*
843635 TTTTTCC-TGTAAGCCCACA
1 -TTTTCCTTTTAAGCCCACA
843654 AGTCGATGGC
Statistics
Matches: 196, Mismatches: 24, Indels: 47
0.73 0.09 0.18
Matches are distributed among these distances:
27 46 0.23
28 1 0.01
32 21 0.11
33 32 0.16
34 31 0.16
35 60 0.31
36 5 0.03
ACGTcount: A:0.19, C:0.33, G:0.13, T:0.35
Consensus pattern (32 bp):
TTTTCCTTTTAAGCCCACACTCCGTGGCACCC
Found at i:843671 original size:34 final size:34
Alignment explanation
Indices: 843539--843667 Score: 95
Period size: 34 Copynumber: 3.9 Consensus size: 34
843529 TCTGTGGCAC
* * *
843539 CCTTTTAAGTCCACAACTTCGTGGCA-CCTTTT-
1 CCTTGTAAGCCCACAACTCCGTGGCACCCTTTTG
* * * ** *
843571 CTTTTTAAGTCCATGACTCTGTGGCACCCTTTTG
1 CCTTGTAAGCCCACAACTCCGTGGCACCCTTTTG
* * *
843605 CCTTTTAAGCCCACACCTCCGTGGCATCCCTTTTT
1 CCTTGTAAGCCCACAACTCCGTGGCA-CCCTTTTG
*
843640 CC-TGTAAGCCCACAAGT-CGATGGCACCC
1 CCTTGTAAGCCCACAACTCCG-TGGCACCC
843668 CTTTCAAAAG
Statistics
Matches: 78, Mismatches: 15, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
32 21 0.27
33 11 0.14
34 37 0.47
35 9 0.12
ACGTcount: A:0.18, C:0.34, G:0.16, T:0.33
Consensus pattern (34 bp):
CCTTGTAAGCCCACAACTCCGTGGCACCCTTTTG
Found at i:843885 original size:39 final size:39
Alignment explanation
Indices: 843824--843975 Score: 160
Period size: 39 Copynumber: 3.7 Consensus size: 39
843814 ACAAATGTCA
* *
843824 CTGGCCTTGAATCAGTACATTGGCACAAGCCCAATATCG
1 CTGGCCTTGAATCAGCATATTGGCACAAGCCCAATATCG
* *
843863 CTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCG
1 CTGGCCTTGAATCAGCATATTGGCA------C---AAGCCCAATATCG
* *
843911 TTGGCCTTGAATCAGCATATTGTCACAAGCCCAATATCG
1 CTGGCCTTGAATCAGCATATTGGCACAAGCCCAATATCG
*
843950 CTGGCCTTGAATCAGCATATGGGCAC
1 CTGGCCTTGAATCAGCATATTGGCAC
843976 CTTCATCTTT
Statistics
Matches: 93, Mismatches: 11, Indels: 18
0.76 0.09 0.15
Matches are distributed among these distances:
39 57 0.61
42 1 0.01
45 1 0.01
48 34 0.37
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (39 bp):
CTGGCCTTGAATCAGCATATTGGCACAAGCCCAATATCG
Found at i:843938 original size:87 final size:86
Alignment explanation
Indices: 843766--844024 Score: 365
Period size: 87 Copynumber: 3.0 Consensus size: 86
843756 TCTTCTAAGT
* * * **
843766 CCAATATCGTTGACCTTGAATCAGCATATTGGCACCTTTAACTTTAAGACAAATGTCACTGGCCT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTT--CTTTAAGACCAATGTCGTTGGCCT
*
843831 TGAATCAGTACATTGGCACAAGC
64 TGAATCAGCACATTGGCACAAGC
843854 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGTTGGCCTT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-TCTTTAAGACCAATGTCGTTGGCCTT
* *
843919 GAATCAGCATATTGTCACAAGC
65 GAATCAGCACATTGGCACAAGC
* * *
843941 CCAATATCGCTGGCCTTGAATCAGCATATGGGCACCTTCATCTTTAAGACCGATGTCGTTGACCT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT--TCTTTAAGACCAATGTCGTTGGCCT
*
844006 TGAATCAGCACATGGGCAC
64 TGAATCAGCACATTGGCAC
844025 CTTAACCATT
Statistics
Matches: 154, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
87 78 0.51
88 75 0.49
89 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.28
Consensus pattern (86 bp):
CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTCTTTAAGACCAATGTCGTTGGCCTTG
AATCAGCACATTGGCACAAGC
Found at i:844026 original size:49 final size:49
Alignment explanation
Indices: 843951--844220 Score: 292
Period size: 49 Copynumber: 5.4 Consensus size: 49
843941 CCAATATCGC
* * *
843951 TGGCCTTGAATCAGCATATGGGCACCTTCATCTTTAAGACCGATGTCGT
1 TGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCGATGTCGT
* * * * *
844000 TGACCTTGAATCAGCACATGGGCACCTTAACCATTTTTAAGTCCAATGTCGC
1 TGGCCTTGAATCAGCACATTGGCACCTT---CATCTTTAAGTCCGATGTCGT
* * * * *
844052 TGGCCTTGAATCAGCACATTGCCATCTTCATCTTTAAGTCTGGTATCGT
1 TGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCGATGTCGT
* * * *
844101 TGGCCTTGAATCAACATATTGGCACCGTT-ATCTTTAAGAT-CAATGTCGC
1 TGGCCTTGAATCAGCACATTGGCACC-TTCATCTTTAAG-TCCGATGTCGT
* * *
844150 TGGCCTTGAATCAGCACATTGGCACCTTCATCTTTGAGTCTGATATCGT
1 TGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCGATGTCGT
*
844199 TGGCCTTGAATCAGCATATTGG
1 TGGCCTTGAATCAGCACATTGG
844221 AATCTTTAGC
Statistics
Matches: 181, Mismatches: 33, Indels: 14
0.79 0.14 0.06
Matches are distributed among these distances:
48 3 0.02
49 134 0.74
50 3 0.02
52 41 0.23
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.33
Consensus pattern (49 bp):
TGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCGATGTCGT
Found at i:844125 original size:101 final size:99
Alignment explanation
Indices: 843941--844274 Score: 386
Period size: 101 Copynumber: 3.3 Consensus size: 99
843931 TGTCACAAGC
* * * * * * *
843941 CCAATATCGCTGGCCTTGAATCAGCATATGGGCACCTTCATCTTTAAGACCGATGTCGTTGACCT
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCTGATATCGTTGGCCT
* *
844006 TGAATCAGCACATGGGCACCTTAACCATTTTTAAGT
66 TGAATCAGCATATTGGCACCTT-A-CATTTTTAAGT
* * *
844042 CCAATGTCGCTGGCCTTGAATCAGCACATTGCCATCTTCATCTTTAAGTCTGGTATCGTTGGCCT
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCTGATATCGTTGGCCT
* *
844107 TGAATCAACATATTGGCACCGTT--ATCTTTAAGAT
66 TGAATCAGCATATTGGCACC-TTACATTTTTAAG-T
*
844141 -CAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTGAGTCTGATATCGTTGGCCT
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCTGATATCGTTGGCCT
* * ** *
844205 TGAATCAGCATATTGGAATCTTTAGCATTCCTAAGC
66 TGAATCAGCATATTGGCA-CCTTA-CATTTTTAAGT
** *
844241 CCAATGTCGCTGGCCTTGTCTCAGTACATTGGCA
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
844275 TTCTTCTTCA
Statistics
Matches: 198, Mismatches: 28, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
98 86 0.43
99 2 0.01
101 108 0.55
102 2 0.01
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.32
Consensus pattern (99 bp):
CCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCTGATATCGTTGGCCT
TGAATCAGCATATTGGCACCTTACATTTTTAAGT
Found at i:847245 original size:19 final size:19
Alignment explanation
Indices: 847221--847283 Score: 75
Period size: 19 Copynumber: 3.6 Consensus size: 19
847211 AAACAGTAAA
847221 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGTGT
847240 TGTATCGATAC--AA----
1 TGTATCGATACATAAGTGT
*
847253 TGTATTGATACATAAGTGT
1 TGTATCGATACATAAGTGT
847272 TGTATCGATACA
1 TGTATCGATACA
847284 ATGTATCGCT
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
13 10 0.28
15 2 0.06
17 2 0.06
19 22 0.61
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (19 bp):
TGTATCGATACATAAGTGT
Found at i:847263 original size:32 final size:32
Alignment explanation
Indices: 847219--847291 Score: 137
Period size: 32 Copynumber: 2.3 Consensus size: 32
847209 ACAAACAGTA
847219 AATGTATCGATACATAAGTGTTGTATCGATAC
1 AATGTATCGATACATAAGTGTTGTATCGATAC
*
847251 AATGTATTGATACATAAGTGTTGTATCGATAC
1 AATGTATCGATACATAAGTGTTGTATCGATAC
847283 AATGTATCG
1 AATGTATCG
847292 CTACGAAGCT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 39 1.00
ACGTcount: A:0.34, C:0.11, G:0.19, T:0.36
Consensus pattern (32 bp):
AATGTATCGATACATAAGTGTTGTATCGATAC
Found at i:847338 original size:20 final size:20
Alignment explanation
Indices: 847313--847369 Score: 80
Period size: 20 Copynumber: 2.9 Consensus size: 20
847303 CTACCAAGGA
847313 AATGTATCGATACATT-ATTC
1 AATGTATCGATACATTGA-TC
847333 AATGTATCGATACATTGATC
1 AATGTATCGATACATTGATC
**
847353 TTTGTATCGATACATTG
1 AATGTATCGATACATTG
847370 GGGAATTTTG
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
20 33 0.97
21 1 0.03
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.40
Consensus pattern (20 bp):
AATGTATCGATACATTGATC
Found at i:850111 original size:13 final size:13
Alignment explanation
Indices: 850093--850117 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
850083 ACACACTTTG
850093 TGTATCGATACAT
1 TGTATCGATACAT
850106 TGTATCGATACA
1 TGTATCGATACA
850118 CGTTTAAAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:850150 original size:20 final size:20
Alignment explanation
Indices: 850103--850155 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
850093 TGTATCGATA
*
850103 CATTGTATCGATACACGTTT
1 CATTGTATCGATACACGTTG
* ** *
850123 AAAAGTATCGATACATGTTG
1 CATTGTATCGATACACGTTG
850143 CATTGTATCGATA
1 CATTGTATCGATA
850156 TATGAAAAAG
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Consensus pattern (20 bp):
CATTGTATCGATACACGTTG
Found at i:850216 original size:137 final size:136
Alignment explanation
Indices: 849970--850275 Score: 497
Period size: 137 Copynumber: 2.2 Consensus size: 136
849960 ACCCTTAAAA
*
849970 GTATCGATACACAATTCAAAGTATCGATACATGTTGCAATGTATCGATACATGAAAAAGATGTAT
1 GTATCGATACAC-ATTAAAAGTATCGATACATGTTGCAATGTATCGATACATGAAAAAGATGTAT
*** *
850035 CGATACATGTCATTGGGATTTCTTGGCAGTAGCCAAACTTGTATCGATACACACTTTGTGTATCG
65 CGATACATGTCATTGGGATTTCTTGGCAGTAGCCAAACTTGTATCGATACACAAAGTATGTATCG
850100 ATACATT
130 ATACATT
* * *
850107 GTATCGATACACGTTTAAAAGTATCGATACATGTTGCATTGTATCGATATATGAAAAAGATGTAT
1 GTATCGATACAC-ATTAAAAGTATCGATACATGTTGCAATGTATCGATACATGAAAAAGATGTAT
850172 CGATACATGTCATTGGGATTTCTTGGCAGTAGCCAAACTTGTATCGATACACAAAGTATGTATCG
65 CGATACATGTCATTGGGATTTCTTGGCAGTAGCCAAACTTGTATCGATACACAAAGTATGTATCG
850237 ATACATT
130 ATACATT
850244 GTATCGATACACCA-TAAAATGTATCGATACAT
1 GTATCGATACA-CATTAAAA-GTATCGATACAT
850276 TGGCTTGCAA
Statistics
Matches: 157, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
136 5 0.03
137 151 0.96
138 1 0.01
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (136 bp):
GTATCGATACACATTAAAAGTATCGATACATGTTGCAATGTATCGATACATGAAAAAGATGTATC
GATACATGTCATTGGGATTTCTTGGCAGTAGCCAAACTTGTATCGATACACAAAGTATGTATCGA
TACATT
Found at i:850248 original size:13 final size:13
Alignment explanation
Indices: 850230--850254 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
850220 ACACAAAGTA
850230 TGTATCGATACAT
1 TGTATCGATACAT
850243 TGTATCGATACA
1 TGTATCGATACA
850255 CCATAAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:850251 original size:32 final size:33
Alignment explanation
Indices: 850210--850277 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
850200 GTAGCCAAAC
*
850210 TTGTATCGATACA-CA-AAGTATGTATCGATACA
1 TTGTATCGATACACCATAA-AATGTATCGATACA
850242 TTGTATCGATACACCATAAAATGTATCGATACA
1 TTGTATCGATACACCATAAAATGTATCGATACA
850275 TTG
1 TTG
850278 GCTTGCAACG
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
32 13 0.39
33 18 0.55
34 2 0.06
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (33 bp):
TTGTATCGATACACCATAAAATGTATCGATACA
Done.