Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold269
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1389591
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 499 characters in sequence are not A, C, G, or T
File 6 of 7
Found at i:851719 original size:21 final size:20
Alignment explanation
Indices: 851687--851725 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
851677 GCGACAATAA
* *
851687 AAAATTTCTTCCTCTTTTCT
1 AAAATATCTTCCCCTTTTCT
851707 AAAATATCTTTCCCCTTTT
1 AAAATATC-TTCCCCTTTT
851726 TTGTGTCCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.23, C:0.26, G:0.00, T:0.51
Consensus pattern (20 bp):
AAAATATCTTCCCCTTTTCT
Found at i:851801 original size:20 final size:18
Alignment explanation
Indices: 851760--851815 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 18
851750 TAAAACAAAC
*
851760 AATTTCTCCCCCTTATTCA
1 AATTTCTTCCCCTT-TTCA
851779 AATTTCTTCCCCTTTTCTAA
1 AATTTCTTCCCCTTTTC--A
*
851799 AATATCTCTCCCCTTTT
1 AATTTCT-TCCCCTTTT
851816 TTTTGTTTCT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
18 3 0.09
19 13 0.41
20 7 0.22
21 9 0.28
ACGTcount: A:0.20, C:0.34, G:0.00, T:0.46
Consensus pattern (18 bp):
AATTTCTTCCCCTTTTCA
Found at i:851856 original size:92 final size:90
Alignment explanation
Indices: 851688--851884 Score: 313
Period size: 92 Copynumber: 2.2 Consensus size: 90
851678 CGACAATAAA
* *
851688 AAATTTCTTCCTCTTTTCTAAAATATCTTTCCCCTTTTTTGTGTCCAAAATAATCTCTTTTATAA
1 AAATTTCTTCCCCTTTTCTAAAATATCTCTCCCCTTTTTTGTGTCCAAAATAATCTCTTTTATAA
851753 AACAAACAATTTCTCCCCCTTATTC
66 AACAAACAATTTCTCCCCCTTATTC
* *
851778 AAATTTCTTCCCCTTTTCTAAAATATCTCTCCCCTTTTTTTTGTTTCTAAAATAATCTCTTTTAT
1 AAATTTCTTCCCCTTTTCTAAAATATCTCTCCCC--TTTTTTGTGTCCAAAATAATCTCTTTTAT
* *
851843 AAAACAAATAATTTCTCCCTCTTATTC
64 AAAACAAACAATTTCTCCCCCTTATTC
*
851870 AAATTTCTCCCCCTT
1 AAATTTCTTCCCCTT
851885 ATAATTTATT
Statistics
Matches: 98, Mismatches: 7, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
90 32 0.33
92 66 0.67
ACGTcount: A:0.27, C:0.26, G:0.02, T:0.46
Consensus pattern (90 bp):
AAATTTCTTCCCCTTTTCTAAAATATCTCTCCCCTTTTTTGTGTCCAAAATAATCTCTTTTATAA
AACAAACAATTTCTCCCCCTTATTC
Found at i:858241 original size:52 final size:52
Alignment explanation
Indices: 858163--858266 Score: 181
Period size: 52 Copynumber: 2.0 Consensus size: 52
858153 AATTTGCCTG
* *
858163 CATTTCATGGTGTATCAATACATCTGGGCAAATTTACCTGTATGTATCGATA
1 CATTTCATAGTGTATCAATACATCTGGGCAAATTTACCTGCATGTATCGATA
*
858215 CATTTCATAGTGTATCGATACATCTGGGCAAATTTACCTGCATGTATCGATA
1 CATTTCATAGTGTATCAATACATCTGGGCAAATTTACCTGCATGTATCGATA
858267 GAATGTATCG
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.36
Consensus pattern (52 bp):
CATTTCATAGTGTATCAATACATCTGGGCAAATTTACCTGCATGTATCGATA
Found at i:860786 original size:13 final size:13
Alignment explanation
Indices: 860768--860804 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
860758 ATAGTGCCGT
860768 TGTATCGATACAA
1 TGTATCGATACAA
*
860781 TGTATCGATACAG
1 TGTATCGATACAA
860794 TGTATCGATAC
1 TGTATCGATAC
860805 TAAGATCCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:864112 original size:673 final size:673
Alignment explanation
Indices: 862117--866805 Score: 8571
Period size: 673 Copynumber: 7.0 Consensus size: 673
862107 GGATTCATTA
862117 GTAGCACCAAAAATAATATCATCAACATATACTTGTACTATTAAAATATCTTTTTCTTCTGATTT
1 GTAGCACCAAAAATAATATCATCAACATATACTTGTACTATTAAAATATCTTTTTCTTCTGATTT
862182 AATGAAAAAAGTTTTGTCAACATTTCCTCTGTTAAAGCCTTTTTCAATT-AAAACTTTGAAAGTC
66 AATGAAAAAAGTTTTGTCAACATTTCCTCTGTTAAAGCCTTTTTCAATTAAAAACTTTGAAAGTC
*
862246 TATCATACTAAGCTCGAGGAGCTTGTTTTAGACTATACAAGGCCTTTAAAAGTTTAAAAACATGA
131 TATCATACTAAGCTCGAGGAGCTTGTTTTAGACCATACAAGGCCTTTAAAAGTTTAAAAACATGA
862311 TTTGGAAATAGAGGATTTTCAAAGCTGGGAGGTTGTTCAACATAAACCTCTTCATTTATAAAACC
196 TTTGGAAATAGAGGATTTTCAAAGCTGGGAGGTTGTTCAACATAAACCTCTTCATTTATAAAACC
*
862376 ATTTAAAATGCACATTTGACATCCATTAGATATAATTTGAAATCATAAAAGCAAGCAAAGGCTAG
261 ATTTAAAATGCACATTTGACATCCATTTGATATAATTTGAAATCATAAAAGCAAGCAAAGGCTAG
*
862441 TAAAATCTTTATGGCTTCTAACCTAGCTACGGGAGCGTAGGTTTCGTCATAGTCAATACCTTCCT
326 TAAAATCCTTATGGCTTCTAACCTAGCTACGGGAGCGTAGGTTTCGTCATAGTCAATACCTTCCT
*
862506 CTTAACTATAACCTTTATCTACTAACCTAGCTTTGTTTCTTACTACTATTCCATCTTCATCTAAT
391 CTTAACTATAACCTTTAGCTACTAACCTAGCTTTGTTTCTTACTACTATTCCATCTTCATCTAAT
*
862571 TTATTTTTAAACACCCATTTAGTCCCTATTATTGGATGATCACTAAGTCTTTTTACTAAATACCA
456 TTATTTCTAAACACCCATTTAGTCCCTATTATTGGATGATCACTAAGTCTTTTTACTAAATACCA
*
862636 TACCTTACTTCTCTCAAATTGATTTAATTTTTCTTGCATAGCCATAATCCAATTTTCATCTTGTA
521 TACCTTACTTCTCTCAAATTGATTTAATTCTTCTTGCATAGCCATAATCCAATTTTCATCTTGTA
* *
862701 CAGCCTTATCAATACTTTTAGGCTCTATTTAAGAGAGAAAAGCTACACAGTCGCAAGTATTTCTA
586 CGGCCTTATCAATACTTTTAGGCTCTACTTAAGAGAGAAAAGCTACACAGTCGCAAGTATTTCTA
* *
862766 AGACAAGAGCTAAAGCCTGTTTT
651 AGAGAAGACCTAAAGCCTGTTTT
*
862789 ATAGCACCAAAAATAATATCATCAACATATACTTGTACTATTAAAATATCTTTTTCTTCTGATTT
1 GTAGCACCAAAAATAATATCATCAACATATACTTGTACTATTAAAATATCTTTTTCTTCTGATTT
862854 AATGAAAAAAGTTTTGTCAACATTTCCTCTGTTAAAGCCTTTTTCAATTAAAAACTTTGAAAGTC
66 AATGAAAAAAGTTTTGTCAACATTTCCTCTGTTAAAGCCTTTTTCAATTAAAAACTTTGAAAGTC
*
862919 TATCATACTAAGCTCGAGGAGCTTGTTTTAGACCATTCAAGGCCTTTAAAAGTTTAAAAACATGA
131 TATCATACTAAGCTCGAGGAGCTTGTTTTAGACCATACAAGGCCTTTAAAAGTTTAAAAACATGA
*
862984 TTTGGAAATAGAGGATTTTCAAAGCTGGGAGGTTGTTCAACATAAACCTTTTCATTTATAAAACC
196 TTTGGAAATAGAGGATTTTCAAAGCTGGGAGGTTGTTCAACATAAACCTCTTCATTTATAAAACC
*
863049 ATTTAAAATGCACATTTGACATCTATTTGATATAATTTG-AATCATAAAAGCAAGCAAAGGCTAG
261 ATTTAAAATGCACATTTGACATCCATTTGATATAATTTGAAATCATAAAAGCAAGCAAAGGCTAG
* **
863113 AAAAATCCTTATGGCTTCTAACCTAGCTATAGGAGCGTAGGTTTCGTCATAGTCAATACCTTCCT
326 TAAAATCCTTATGGCTTCTAACCTAGCTACGGGAGCGTAGGTTTCGTCATAGTCAATACCTTCCT
863178 CTTAACTATAACCTTTAGCTACTAACCTAGCTTTGTTTCTTACTACTATTCCATCTTCATCTAAT
391 CTTAACTATAACCTTTAGCTACTAACCTAGCTTTGTTTCTTACTACTATTCCATCTTCATCTAAT
863243 TTATTTCTAAACACCCATTTAGTCCCTATTATTGGATGATCACTAAGTCTTTTTACTAAATACCA
456 TTATTTCTAAACACCCATTTAGTCCCTATTATTGGATGATCACTAAGTCTTTTTACTAAATACCA
* *
863308 TACCTTACATCTCTCAAATTGATTTAATTCTTCTTGCATAGCCATAATCCAATTTTTATCTTGTA
521 TACCTTACTTCTCTCAAATTGATTTAATTCTTCTTGCATAGCCATAATCCAATTTTCATCTTGTA
*
863373 CGGCCTTATCAATACTTTTAGGCTCTATTTAAGAGAGAAAAGCTACACAGTCGCAAGTATTTCTA
586 CGGCCTTATCAATACTTTTAGGCTCTACTTAAGAGAGAAAAGCTACACAGTCGCAAGTATTTCTA
*
863438 AGAGAAGACCTAAAACCTGTTTT
651 AGAGAAGACCTAAAGCCTGTTTT
863461 GTAGCACCAAAAATAATATCATCAACATATACTTGTACTATTAAAATATCTTTTTCTTCTGATTT
1 GTAGCACCAAAAATAATATCATCAACATATACTTGTACTATTAAAATATCTTTTTCTTCTGATTT
* *
863526 AATGAAAAAAGTTTTGTCAACATTTCCTCTGTTAAAGCCCTTTTCAATTAAAAACATTGAAAGTC
66 AATGAAAAAAGTTTTGTCAACATTTCCTCTGTTAAAGCCTTTTTCAATTAAAAACTTTGAAAGTC
863591 TATCATACTAAGCTCGAGGAGCTTGTTTTAGACCATACAAGGCCTTTAAAAGTTTAAAAACATGA
131 TATCATACTAAGCTCGAGGAGCTTGTTTTAGACCATACAAGGCCTTTAAAAGTTTAAAAACATGA
* * *
863656 TTTGGAAATAGAGGATTTTCAAAGCTAGGAGGTTGTTTAACATAAACCTCTTCATTAATAAAACC
196 TTTGGAAATAGAGGATTTTCAAAGCTGGGAGGTTGTTCAACATAAACCTCTTCATTTATAAAACC
*
863721 ATTTAAAATGCACATTTGACATCCATTTGAGA-ATATTTGAAATCATAAAAGCAAGCAAAGGCTA
261 ATTTAAAATGCACATTTGACATCCATTTGATATA-ATTTGAAATCATAAAAGCAAGCAAAGGCTA
863785 GTAAAATCCTTATGGCTTCTAACCTAGCTACGGGAGCGTAGGTTTCGTCATAGTCAATACCTTCC
325 GTAAAATCCTTATGGCTTCTAACCTAGCTACGGGAGCGTAGGTTTCGTCATAGTCAATACCTTCC
*
863850 TCTTAACTATAACCTTTAGCTACTAACCTAGCTTTGTTTCTTACTACTATTACATCTTCATCTAA
390 TCTTAACTATAACCTTTAGCTACTAACCTAGCTTTGTTTCTTACTACTATTCCATCTTCATCTAA
* *
863915 TTTATTTCTAAACACCCATTTAGTCCCTATTATTGGATGATTACTAAGTCTTTATACTAAATACC
455 TTTATTTCTAAACACCCATTTAGTCCCTATTATTGGATGATCACTAAGTCTTTTTACTAAATACC
863980 ATACCTTACTTCTCTCAAATTGATTTAATTCTTCTTGCATAGCCATAATCCAATTTTCATCTTGT
520 ATACCTTACTTCTCTCAAATTGATTTAATTCTTCTTGCATAGCCATAATCCAATTTTCATCTTGT
*
864045 ACGGCCTTATCAATACTTTTAGGCACTACTTAAGAGAGAAAAGCTACACAGTCGCAAGTATTTCT
585 ACGGCCTTATCAATACTTTTAGGCTCTACTTAAGAGAGAAAAGCTACACAGTCGCAAGTATTTCT
* *
864110 AAGAGAAGACCTAAAGCCTATGTT
650 AAGAGAAGACCTAAAGCCTGTTTT
* * *
864134 GTAGCACCAAGAATAATATCATCAACATATACTTGTACTATTAAACTATATTTTTCTTCTGATTT
1 GTAGCACCAAAAATAATATCATCAACATATACTTGTACTATTAAAATATCTTTTTCTTCTGATTT
*
864199 AATGAAAAAAGTTTTGTCAACATTTCTTCTGTTAAAGCCTTTTTCAATTAAAAACTTTGAAAGTC
66 AATGAAAAAAGTTTTGTCAACATTTCCTCTGTTAAAGCCTTTTTCAATTAAAAACTTTGAAAGTC
864264 TATCATACTAAGCTCGAGGAGCTTGTTTTAGACCATACAAGGCCTTTAAAAGTTTAAAAACATGA
131 TATCATACTAAGCTCGAGGAGCTTGTTTTAGACCATACAAGGCCTTTAAAAGTTTAAAAACATGA
* *
864329 TTTGGAAATAGAGGATTTTCAAAGCTGGGAGGTTGGTCAACATAAACCTCTTCAGTTATAAAACC
196 TTTGGAAATAGAGGATTTTCAAAGCTGGGAGGTTGTTCAACATAAACCTCTTCATTTATAAAACC
* *
864394 ATTTAAAATGCACTTTTGACATCCATTTGATATAATTTGAAATCATAAAAGCAAGCAAGGGCTAG
261 ATTTAAAATGCACATTTGACATCCATTTGATATAATTTGAAATCATAAAAGCAAGCAAAGGCTAG
* *
864459 TAAAATCCTTATGGCTTCTAACCTAGCTACGGGAGCATAGGTTTTGTCATAGTCAATACCTTCCT
326 TAAAATCCTTATGGCTTCTAACCTAGCTACGGGAGCGTAGGTTTCGTCATAGTCAATACCTTCCT
864524 CTTAACTATAACCTTTAGCTACTAACCTAGCTTTGTTTCTTACTACTATTCCATCTTCATCTAAT
391 CTTAACTATAACCTTTAGCTACTAACCTAGCTTTGTTTCTTACTACTATTCCATCTTCATCTAAT
*
864589 TTATTTCTAAACACCCATTTAGTCCCTATTATTGGATGATCACTAAATCTTTTTACTAAATACCA
456 TTATTTCTAAACACCCATTTAGTCCCTATTATTGGATGATCACTAAGTCTTTTTACTAAATACCA
864654 TACCTTACTTCTCTCAAATTGATTTAATTCTTCTTGCATAGCCATAATCCAATTTTCATCTTGTA
521 TACCTTACTTCTCTCAAATTGATTTAATTCTTCTTGCATAGCCATAATCCAATTTTCATCTTGTA
* *
864719 CGGCCTTATCAATACTTTTAGGCTCTACTTAAGGGAGAAAAGCTACACAGTCGCTAGTATTTCTA
586 CGGCCTTATCAATACTTTTAGGCTCTACTTAAGAGAGAAAAGCTACACAGTCGCAAGTATTTCTA
864784 AGAGAAGACCTAAAGCCTGTTTT
651 AGAGAAGACCTAAAGCCTGTTTT
*
864807 GTAGCAACAAAAATAATATCATCAACATATACTTGTACTATTAAAATATCTTTTTCTTCTGATTT
1 GTAGCACCAAAAATAATATCATCAACATATACTTGTACTATTAAAATATCTTTTTCTTCTGATTT
* *
864872 AAAGAAAAAAGTTTTGTCAACATTTCCTTTGTTAAAGCCTTTTTCAATTAAAAACTTTGAAAGTC
66 AATGAAAAAAGTTTTGTCAACATTTCCTCTGTTAAAGCCTTTTTCAATTAAAAACTTTGAAAGTC
* * *
864937 TATCATGCTAAGCTCGAGGAGCTTGTTTTAGACCATACAAGGCCTTCAAAAGTTTAACAACATGA
131 TATCATACTAAGCTCGAGGAGCTTGTTTTAGACCATACAAGGCCTTTAAAAGTTTAAAAACATGA
* *
865002 TTTGGAAATAGAGGATTTTCAAAGCTGGGAGGTTGGTCAACATAAACCTCTTCAGTTATAAAACC
196 TTTGGAAATAGAGGATTTTCAAAGCTGGGAGGTTGTTCAACATAAACCTCTTCATTTATAAAACC
* *
865067 ATTTAAAATGCACTTTTGACATCCATTTGATATAATTTGAAATCATAAAAGCAAGCAAGGGCTAG
261 ATTTAAAATGCACATTTGACATCCATTTGATATAATTTGAAATCATAAAAGCAAGCAAAGGCTAG
* *
865132 TAAAATCCTTATGGCTTCTAACCTAGCTACGGGAGCATAGGTTTTGTCATAGTCAATACCTTCCT
326 TAAAATCCTTATGGCTTCTAACCTAGCTACGGGAGCGTAGGTTTCGTCATAGTCAATACCTTCCT
865197 CTTAACTATAACCTTTAGCTACTAACCTAGCTTTGTTTCTTACTACTATTCCATCTTCATCTAAT
391 CTTAACTATAACCTTTAGCTACTAACCTAGCTTTGTTTCTTACTACTATTCCATCTTCATCTAAT
*
865262 ATATTTCTAAACACCCATTTAGTCCCTATTATTGGATGATCACTAAGTCTTTTTACTAAATACCA
456 TTATTTCTAAACACCCATTTAGTCCCTATTATTGGATGATCACTAAGTCTTTTTACTAAATACCA
865327 TACCTTACTTCTCTCAAATTGATTTAATTCTTCTTGCATAGCCATAATCCAATTTTCATCTTGTA
521 TACCTTACTTCTCTCAAATTGATTTAATTCTTCTTGCATAGCCATAATCCAATTTTCATCTTGTA
* *
865392 CGGCCTTATCAATACTTTTAGGCTCTACTTAAGGGAGAAAAGCTACACAGTCGCTAGTATTTCTA
586 CGGCCTTATCAATACTTTTAGGCTCTACTTAAGAGAGAAAAGCTACACAGTCGCAAGTATTTCTA
865457 AGAGAAGACCTAAAGCCTGTTTT
651 AGAGAAGACCTAAAGCCTGTTTT
* *
865480 GTAGCAACAAAAATAATATGATCAACATATACTTGTACTATTAAAATATCTTTTTCTTCTGATTT
1 GTAGCACCAAAAATAATATCATCAACATATACTTGTACTATTAAAATATCTTTTTCTTCTGATTT
* *
865545 AAAGAAAAAAGTTTTGTCAACATTTCCTCTGTTAAAGCCTTTTTCAATTAAAAACATTGAAAGTC
66 AATGAAAAAAGTTTTGTCAACATTTCCTCTGTTAAAGCCTTTTTCAATTAAAAACTTTGAAAGTC
* *
865610 TATCATACTAAGCTCAAGGAGCTTGTTTTATACCATACAAGGCCTTTAAAAGTTTAAAAACATGA
131 TATCATACTAAGCTCGAGGAGCTTGTTTTAGACCATACAAGGCCTTTAAAAGTTTAAAAACATGA
*
865675 TTTGGAAATAGAGGATTTTCAAAGCTGGGA-G--GTTCAACATAAACCTCTTCATTAATAAAACC
196 TTTGGAAATAGAGGATTTTCAAAGCTGGGAGGTTGTTCAACATAAACCTCTTCATTTATAAAACC
*
865737 ATTTAAAATGCACATTTGACATCCATTTGATGTAATTTGAAATCATAAAAGCAAGCAAAGGCTAG
261 ATTTAAAATGCACATTTGACATCCATTTGATATAATTTGAAATCATAAAAGCAAGCAAAGGCTAG
* * * * *
865802 TAGAATCCTTATGGCTTCTGACCTAGCTACGGGAGCCTAGGTTTAGTCATAGTCAATAACTTCCT
326 TAAAATCCTTATGGCTTCTAACCTAGCTACGGGAGCGTAGGTTTCGTCATAGTCAATACCTTCCT
865867 CTTAACTATAACCTTTAGCTACTAACCTAGCTTTGTTTCTTACTACTATTCCATCTTCATCTAAT
391 CTTAACTATAACCTTTAGCTACTAACCTAGCTTTGTTTCTTACTACTATTCCATCTTCATCTAAT
*
865932 TTATTTCTAAACACCCATTTAGTCCCTATTATTGGATGATCACTAAGTCTTTTTACTAAATGCCA
456 TTATTTCTAAACACCCATTTAGTCCCTATTATTGGATGATCACTAAGTCTTTTTACTAAATACCA
*
865997 TACCTTACTTCTCTCAAAATGATTTAATTCTTCTTGCATAGCCATAATCCAATTTTCATCTTGTA
521 TACCTTACTTCTCTCAAATTGATTTAATTCTTCTTGCATAGCCATAATCCAATTTTCATCTTGTA
866062 CGGCCTTATCAATACTTTTAGGCTCTACTTAAGAGAGAAAAGCTACACAGTCGCAAGTATTTCTA
586 CGGCCTTATCAATACTTTTAGGCTCTACTTAAGAGAGAAAAGCTACACAGTCGCAAGTATTTCTA
*
866127 AGAGAAGACCTAAAACCTGTTTT
651 AGAGAAGACCTAAAGCCTGTTTT
*
866150 GTAGCACCAAAAATAATATCATCAACATATACTTGTACTATTAAAATATCTTTTGCTTCTGATTT
1 GTAGCACCAAAAATAATATCATCAACATATACTTGTACTATTAAAATATCTTTTTCTTCTGATTT
866215 AATGAAAAAAGTTTTGTCAACATTTCCTCTGTTAAAGCCTTTTTCAATTAAAAACTTTGAAAGTC
66 AATGAAAAAAGTTTTGTCAACATTTCCTCTGTTAAAGCCTTTTTCAATTAAAAACTTTGAAAGTC
866280 TATCATACTAAGCTCGAGGAGCTTGTTTTAGACCATACAAGGCCTTTAAAAGTTTAAAAACATGA
131 TATCATACTAAGCTCGAGGAGCTTGTTTTAGACCATACAAGGCCTTTAAAAGTTTAAAAACATGA
866345 TTTGGAAATAGAGGATTTTCAAAGCTGGGAGGTTGTTCAACATAAACCTCTTCATTTATAAAACC
196 TTTGGAAATAGAGGATTTTCAAAGCTGGGAGGTTGTTCAACATAAACCTCTTCATTTATAAAACC
*
866410 ATTTAAAATGCACTTTTGACATCCATTTGATATAATTTGAAATCATAAAAGCAAGCAAAGGCTAG
261 ATTTAAAATGCACATTTGACATCCATTTGATATAATTTGAAATCATAAAAGCAAGCAAAGGCTAG
*
866475 TAAAATCCTTATGGCTTCTAACCTAGCTACGGGAGCGTAGGTTTTGTCATAGTCAATACCTTCCT
326 TAAAATCCTTATGGCTTCTAACCTAGCTACGGGAGCGTAGGTTTCGTCATAGTCAATACCTTCCT
866540 CTTAACTATAACCTTTAGCTACTAACCTAGCTTTGTTTCTTACTACTATTCCATCTTCATCTAAT
391 CTTAACTATAACCTTTAGCTACTAACCTAGCTTTGTTTCTTACTACTATTCCATCTTCATCTAAT
* *
866605 TTATTTCTAAACACCCATTTAGTCCCCATTATTGGATGATCACTTAGTCTTTTTACTAAATACCA
456 TTATTTCTAAACACCCATTTAGTCCCTATTATTGGATGATCACTAAGTCTTTTTACTAAATACCA
*
866670 TACCTTACTTCTCTCAAATTGATTTAATTCTTCTTGCATAGCAATAATCCAATTTTCATCTTGTA
521 TACCTTACTTCTCTCAAATTGATTTAATTCTTCTTGCATAGCCATAATCCAATTTTCATCTTGTA
*
866735 CGGCCTTATCAATACTTTTAGGCTCTATTTAAGAGAGAAAAGCTACACAGTCGCAAGTATTTCTA
586 CGGCCTTATCAATACTTTTAGGCTCTACTTAAGAGAGAAAAGCTACACAGTCGCAAGTATTTCTA
866800 AGAGAA
651 AGAGAA
866806 TCCTAGTTCT
Statistics
Matches: 3885, Mismatches: 125, Indels: 13
0.97 0.03 0.00
Matches are distributed among these distances:
670 645 0.17
671 2 0.00
672 761 0.20
673 2476 0.64
674 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.35
Consensus pattern (673 bp):
GTAGCACCAAAAATAATATCATCAACATATACTTGTACTATTAAAATATCTTTTTCTTCTGATTT
AATGAAAAAAGTTTTGTCAACATTTCCTCTGTTAAAGCCTTTTTCAATTAAAAACTTTGAAAGTC
TATCATACTAAGCTCGAGGAGCTTGTTTTAGACCATACAAGGCCTTTAAAAGTTTAAAAACATGA
TTTGGAAATAGAGGATTTTCAAAGCTGGGAGGTTGTTCAACATAAACCTCTTCATTTATAAAACC
ATTTAAAATGCACATTTGACATCCATTTGATATAATTTGAAATCATAAAAGCAAGCAAAGGCTAG
TAAAATCCTTATGGCTTCTAACCTAGCTACGGGAGCGTAGGTTTCGTCATAGTCAATACCTTCCT
CTTAACTATAACCTTTAGCTACTAACCTAGCTTTGTTTCTTACTACTATTCCATCTTCATCTAAT
TTATTTCTAAACACCCATTTAGTCCCTATTATTGGATGATCACTAAGTCTTTTTACTAAATACCA
TACCTTACTTCTCTCAAATTGATTTAATTCTTCTTGCATAGCCATAATCCAATTTTCATCTTGTA
CGGCCTTATCAATACTTTTAGGCTCTACTTAAGAGAGAAAAGCTACACAGTCGCAAGTATTTCTA
AGAGAAGACCTAAAGCCTGTTTT
Found at i:868927 original size:15 final size:14
Alignment explanation
Indices: 868905--868936 Score: 55
Period size: 15 Copynumber: 2.2 Consensus size: 14
868895 GTTCGATAAT
868905 TTTCTTTTCAAGAA
1 TTTCTTTTCAAGAA
868919 TTTCATTTTCAAGAA
1 TTTC-TTTTCAAGAA
868934 TTT
1 TTT
868937 TTTATTTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.28, C:0.12, G:0.06, T:0.53
Consensus pattern (14 bp):
TTTCTTTTCAAGAA
Found at i:875796 original size:475 final size:474
Alignment explanation
Indices: 874163--883432 Score: 10013
Period size: 475 Copynumber: 19.7 Consensus size: 474
874153 GCCTCGAATG
* * ** * * * *
874163 GATGAGTTTGTTTTGCATGGACATCTAGTCCTTGCCCTATTTTCCTTCAAATCAAAATTAATCCA
1 GATGA-TTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCC
* * * * * *
874228 TTAAATATGTCAAGCTTCGTTTCTCATAACAGTCTCCATTCCTTTCAAGATTAGGAACCAAGAAC
65 TTAAATATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAAC
** * *
874293 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTTTCCAGAAAAGGTTTTCCTTCCA
130 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCA
* * * * * * *
874358 CCGTTTTTTATGGAATCCAAG-TTGTTTCTTAAATAATACAAACGTGAATACTCATACTAATCCC
195 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCC
* * ** * * *
874422 CATTCCTTTT-AGGATAAGGAATGATAACCATAGTCTTCTCTTAAGGATACAC-ATTACTGATGC
260 CATT-CTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGA-TATTGATGC
* * * *
874485 TCTGGTTTCGCCAGAAAGGCTTTCTTCTCACCAATTTTTGTAAAGTCTAAGTCCGTGCCTCAAAT
323 TTTGGTTTCGCAAGAAAGGCTTTCTTC-CACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAT
* * * * * *
874550 GAGACAAACAAGGATTTTAGTAAGGATCTTTATTCATTTTGTGATTGGGCACTACAAACACATTC
387 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* *
874615 TCCTCAATAGGATAAACGATATT
452 TCCTCATTAGGATAAATGATATT
* * * *
874638 GATGATTTTCTTTTGCGTGGAAATCTTTTATTTGCTCTATTTT--TTGCAAAATCAAAATTCATG
1 GATGATTTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTT--AAAATCAAAATTCATC
* * * *
874701 CCTTAAATATGACAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCAAGATGGGGAACCAACA
63 CCTTAAATATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGA
* * *
874766 ACACATTCCCTTCATTAGGATAC-TGACATTGATGCTATGGTGTCGTAGGAAAAGGTGTTT-TTT
128 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGT-TTTCTTT
* * *
874829 CCACCATTTTTGATAGAATCAAAGTTTGTCTGTTAAATAAGTC-AACATGAATAGTCATACTAAT
192 CCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAAT
* * *
874893 CCCCATTCCTTTCAAGATTAGGCACCATAAACATAGTCTTCTCGTAAGGATACACGATATTGATG
257 CCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATG
*
874958 CTTTGGGTTT-GCAAGAAAGCCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTC-A
322 CTTT-GGTTTCGCAAGAAAGGCTTTCTT-CCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAA
** * *
875021 ATGAGACAAACATGGATTCTAGTAATGATCTTCAGCCATTTTGTG-TTAGGCACTAAAAACATAT
385 ATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
* * * *
875085 TCTCTTCTTTATGATAAATGACATT
450 TCTCCTCATTAGGATAAATGATATT
* * * * * * *
875110 GATGATTTTTTTTTGCAAGGAAATCTTTTCTTCGCCATACTTTCCTTAAAGTCAAAATTCAACTC
1 GATGA-TTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCC
* * *
875175 TTAAATATGACAAGCATCGATTCTCG-AAGCTGTCTCCATTCTTTTCAAGGTTAGGAACCAAGAA
65 TTAAATATGACAAGCATCGATTCTCGTAA-CAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAA
* * *
875239 CACATTCCCTTCATTAGGATATAGGACACTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCC
129 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCC
* *
875304 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGATAAACATGAATAGTCAAACTAATCC
194 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCC
* * * *
875369 CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTGTCATAGGGATACACAATATTGACGCT
259 CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCT
* * * * * *
875434 TTTGTTTTGTAAGAAAGGCTTTCTTCCAACTAATTTTTGTAAAGTCTAAGTTCGTGCTTCAAATG
324 TTGGTTTCGCAAGAAAGGCTTTCTTCC-ACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATG
* * * * *
875499 AGACAAACATGTATTCTAGTAATGGTCTTCATTCATTCTGTGATTAGGCACCATGAACACATTCT
388 AGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT
* **
875564 CCTCATTAGGGTAAAACATATT
453 CCTCATTAGGATAAATGATATT
* ** * * * *
875586 AATGATTTTTTTTGTGTGGAAATATTTTCTTTTCCCTATTTTCCATAAAATCAAAGTTCATCCCT
1 GATGATTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCT
* * * * * * * ** * *
875651 TAAATAAGGCAATCATTC-ATTCTTGCAACAGTCTCCATTTTTTTAAAGATTCAGAACTAAAAAC
66 TAAATATGACAAGCA-TCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAAC
* * * * * * * * *
875715 ACATTACCATCATTAGGATATATGATATTGACGCTTTTGTGTCGCAAGGAAAGCTTTTCTTTCGA
130 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCA
* * * * *
875780 ACGTTTTTGGTAGAATCAAGGTTTGTTTCTTAAATAAGACAAATATGAATAGTCATACTAATCCC
195 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCC
* * *
875845 CATTCTTTTTAGGATTAGGCATCATAAACATAGTCTTCTCATAAGGATACAAGATATTGATGCTT
260 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTT
*
875910 TGGTTTCGCAAGAAAGGCTTCCTTCACACCAATTTTTGTAAAGT-TGAAGTTCGA-GCCTCAAAT
325 TGGTTTCGCAAGAAAGGCTTTCTTC-CACCAATTTTTGTAAAGTCT-AAGTTC-ATGCCTCAAAT
* *
875973 AAGA-AAACATGGATTCTAG---TG-TCTTCATTTATTTTGTGATTAGGCACTATAAACAC-TAT
387 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT-T
*
876032 CTCCTTATTAGGATAAATGATATT
451 CTCCTCATTAGGATAAATGATATT
* *
876056 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTGTTTTCCTTAAAATAAAAATTCATCCC
1 GATGATTTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCC
* * * * * * * *
876121 TTAAGTATGATAAGCGTCGGTTCTCATAACAGTATCCATTGTTTCCAAGATTGGGAACCAAGAAC
65 TTAAATATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAAC
* * * * *
876186 ACATTCCCTTCATTAGGATATATGACTTTGATGCTTTGGTATCGCAAAAAAAAGGTTTTCATTCC
130 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGC-AAGAAAAGGTTTTCTTTCC
* * * *
876251 ACCGTTTTTGATGGAATCAGAGTTTGTCTCTTAAATATGACAAACATGAATATTCATACTAATCC
194 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCC
* * * *
876316 CCTTTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTTATAAGGATACATGATATTGATGCT
259 CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCT
* * * * *
876381 TTGGTTTCACAAGAAAGGCTTTCTTTTCACCAATTTTCGTAATGTCTAAGTTCATGCCTCAAAAG
324 TTGGTTTCGCAAGAAAGGCTTTC-TTCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATG
* * * * * * * *
876446 AGACAACCATGGATTCTAGTAACGATCTTCTTTCGTTTTGTAATTAGGCACGATAAATAGATTCT
388 AGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT
*
876511 CATCATTAGGATAAATGATATT
453 CCTCATTAGGATAAATGATATT
* * * *
876533 GATGATTTTTTTT-CATAGAAATCTTTCCTTTGCCCAATTTTCCTTAAAATCAAAATTCATCCCA
1 GATGATTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCT
* * * * * *
876597 TAAATATGACAAGTATCGATTCTTGAAACAGTCTCCATTCTTCTCAAGATTAGGAACCAAAAACA
66 TAAATATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAACA
* * *** *
876662 C-TCTCCCTTCATTAGGATACATAACATTTATGCTTTGGTGTTATAAGAAAAGCTTTTCTTTCCA
131 CAT-TCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCA
* * * *
876726 CCATTTTTTATAGAATCAAAGTTTGTCTGTTAAATAAGACAAACATGAATAGTCAAACTAATCCC
195 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCC
* ** ** * * * *
876791 TATTCTTTTCAATATTAGGCATGATAAACATAGTCTTCGCATAAGGTTACACGATATTAACGCTT
260 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTT
* * * * ** * *
876856 TGGTTTCACAAGAAAGGCTTTCTTCCCACCACTATTCGTAAAGTCTAACATCGTGCCTCAAAAGA
325 TGGTTTCGCAAGAAAGGCTTTCTT-CCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGA
* * * ** * *
876921 GACAAACATGGAATCTAGTAATAATATTTTTTACTTATTTTGTGATTAGGCACCATAAAGACATT
389 GACAAACATGGATTCTAGTAATGATCTTCATT-C--ATTTTGTGATTAGGCACTATAAACACATT
*
876986 CTCCTCATTATGATAAATGATATT
451 CTCCTCATTAGGATAAATGATATT
* * *
877010 GACGATTTTATTTAT-CATGGAAATCATTT-TTTGCCCTATTTTCCTTAAAA--AAAATTCAACC
1 GATGATTTT-TTT-TGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCC
* ** * * * *
877071 CTAAAATATGACAAGCATCGATTCTCGTAATTGTCTCTATTCTTTTCAAAATTGGGGACCAGGAA
64 CTTAAATATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAA
* * * * * * *
877136 CACATTCCCTTTAGTAGGATATATGACATTGATCCTTTGGTGTCACAAGAAAAGGTTTTCATTAC
129 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCC
* * * *
877201 ACTGTTTTTGATACAATCAAAGTTTGT-TACTCAAATAAGACAAACATGAATAGTTATACTAATC
194 ACCGTTTTTGATAGAATCAAAGTTTGTCT-CTTAAATAAGACAAACATGAATAGTCATACTAATC
* * * * *
877265 CCTATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCTTTAA-GATATACGATATTGATC
258 CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTC-ATAAGGATACACGATATTGATG
** * * * ** * *
877329 CTTTGGTTTTTCGAGAAAGGCTTTCTTCCCACCAATTTTTATAAAGTCTAAATTTGTGCGTCAAG
322 CTTTGGTTTCGCAAGAAAGGCTTTCTT-CCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAA
* * *
877394 TGAGACAAACATGGATTCTAGGAATGATATTCATTCATTTTGTGATTAGGCACCATAAACACATT
386 TGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
* *
877459 CTCCTAATTAGGATAAATGATACT
451 CTCCTCATTAGGATAAATGATATT
** * *
877483 GATGATTTTCTTTTGGTTGGAAA-----TCTTTGCCCTATTTTCCTTGAAATCAAAGTTCATCCC
1 GATGATTTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCC
* * * * *
877543 ATAAAAAAGACAAGCATCTATTCTCGTAACAGTCTCCGTTCTTTTCAAGATT-GG------G-A-
65 TTAAATATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAAC
* ** * * * ** * *
877599 AC-TTTCCTTTGTTAGGAAACTTGACATTGATGCTTTAGTGTCATAAGAAATGGTTTTCTTTCCC
130 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCA
* * * * * *
877663 CCGCTTTTGAT--AATCAAAGTTTGTCTCTTAAATAAAAAAAATATCAATAGTCAAAGC-AATCC
195 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATA-CTAATCC
* * * ** *
877725 CCATTCTTTTCAGGACTAGGCACCTTAAACATAGTTTTCTCATAAGGATACACGATATTGACACA
259 CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCT
* * * * * * *
877790 TTGATTTCGCAAAAAAGGCTTTTTTCCCACTAAATTTTGTAAAATCTATGTTCATGCCTCAAATG
324 TTGGTTTCGCAAGAAAGGCTTTCTT-CCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATG
* **
877855 AGACAAACATGGATAT-TGGTAACT-ATCTTTTTTCATTTTGTGATTAGGCAC--T------A--
388 AGACAAACATGGAT-TCTAGTAA-TGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
* *
877908 ----T-A--AGGACAAATGATATC
451 CTCCTCATTAGGATAAATGATATT
* * * * * *
877925 GATGGTTTTCATTTGCATGAAAATCTTTTCTTTGCCTTATTTTCTTTAAAATCAAAGTTCATCCC
1 GATGATTTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCC
* * * *
877990 TTAAATCA-GGCAAGCATTC-ATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAAA
65 TTAAAT-ATGACAAGCA-TCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGA
* ** *
878053 ACACATTCCCTTCATTATGATACATGACATTGATTTTTTGGTGTCACAAGAAAAGGTTTTCTTTC
128 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTC
* * *
878118 CATCGTTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATAGTCAAACTAATC
193 CACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATC
* * * * * * * *
878183 CCAATTCTTTTCAGGATTAGGCACCGTAAAAATAGTCTTCTCGTGA-GATACATGATATTAACGC
258 CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGC
* ** * * * *
878247 TTTGGTTTCGCAAGAAAGGCTTTCCTCCAACCAATTTTTGTAAAACCTAGGTTCCTACCTCAGAT
323 TTTGGTTTCGCAAGAAAGGCTTTCTTCC-ACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAT
* * * *
878312 GGGATAAACATGGA---T--T--T--TCTT--TT-ATTTTGTGATTAGGCATTATAATCACATTC
387 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* *
878365 TCCCCATTAGGATAAATGGTATT
452 TCCTCATTAGGATAAATGATATT
* * * * *
878388 GATGATTTCTTTAGCATGGAAACCTTTTCTTTGCCCTATTTTCCTTAAAATGAAAATTCAGCCCT
1 GATGATTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCT
* * * * *
878453 TAAATATGACATGCATCGATTCTCGTAATAGCCTCCATTTTTTTCAAGATTCGGAACCAAGAACA
66 TAAATATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAACA
** * * *
878518 CATTCCCTTCATTAGGATACATGACATTGATGCTTTGGCATCTCAAGGAAAGGTTTTCTTTCCAA
131 CATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCAC
* * * ** * *
878583 CATTTTTGATAAAATCAAAATTTGTCTCTTAAATGTGACAAACAAGAATAGTCATACCAATCCCC
196 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCC
* * *
878648 ATTCTTTTCAGGATTAGGCGCCATAAACATTGCCTTCTCATAAGGATACACGATATTGATGCTTT
261 ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTT
* * * *
878713 GGTTTTGCAAGAAAGGCTTTCTCTCCACCAATTTTTGTCATGTCTAAGTTTATGCCTCAAATGAG
326 GGTTTCGCAAGAAAGGCTTTCT-TCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAG
* * *
878778 ACAAACATGGATTCTAGTAATGATCTTGACTCTTTTTGTGATTAGGCACTATAAACACATTCTCC
390 ACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC
*
878843 TCATTACGATAAATGATATT
455 TCATTAGGATAAATGATATT
* * **
878863 GATGATTTTTTTTTGCATGTAAATCTTTTCTTTGCCCTACTTTCCTTTAAAAGAAAAATTCATCC
1 GATGA-TTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCC-TTAAAATCAAAATTCATCC
*
878928 CTTAAATATGACAAGCATCGA-T-TC-T--C-GT-T--A--C--TTCAAGATTAGGAACCAAGAA
64 CTTAAATATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAA
* * * * * *
878980 CATATTCCCTTTATTAGAAGAATACATGGCATTGATGCTTCGATGTCGCATGAAAAGGTTTTCTT
129 CACATTCCCTTCATTAG--G-ATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTT
* * * * *
879045 TCCGCTGTTTTTGATAGAATCAAAGTTTGACTCTTAAATAAGACGAACATGAATAGCCATACTAA
191 TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAA
* * * * *
879110 ACCCCATTCTTTTCAGAATTAGGCACCATAAACATAGTCTTCTCAAAAGGATACACAATATTTAT
256 TCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGAT
* * ** * *
879175 GCTTTAGTTTCACAAGAAAGGCTTTCTTCCTACCAACATTTGTAAAGTCTAAGTTCATGCTTTAA
321 GCTTTGGTTTCGCAAGAAAGGCTTTCTTCC-ACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAA
* * *
879240 ATGAGGCAAACATGGA-T-TACGTAATGATCTTCAATT-ATTTTGTGATTAGGCATTATAATCAC
385 ATGAGACAAACATGGATTCTA-GTAATGATCTTC-ATTCATTTTGTGATTAGGCACTATAAACAC
* *
879302 ATTCTCCCCATTAGGATAAATGGTATT
448 ATTCTCCTCATTAGGATAAATGATATT
* * * * *
879329 GATGATTTCTTTAGCATGGAAACCTTTTCATTGCCCTATTTTCCTTAAAATGAAAATTCATCCCT
1 GATGATTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCT
* * * * *
879394 TAAATATGACATGCATCGATTCTCGTAATAGTCTCCATTTTTTTCAAGATTCGAAACCAAGAACA
66 TAAATATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAACA
** * * *
879459 CATTCCCTTCATTAGGATACATGACATTGATGCTTTGGCATCTCAAGGAAAGGTTTTCTTTCCAA
131 CATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCAC
* * * * ** * *
879524 CATTTTTGATAAAATGAAAATTTGTCTCTTAAATGTGACAAACAAGAATAGTCATACCAATCCCC
196 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCC
* * *
879589 ATTCTTTTCAGGATTAGGCGCCATAAACATTGCCTTCTCATAAGGATACACGATATTGATGCTTT
261 ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTT
* * * *
879654 GGTTTTGCAAGAAAGGCTTTCTCTCCACCAATTTTTGTCATGTCTAAGTTTATGCCTCAAATGAG
326 GGTTTCGCAAGAAAGGCTTTCT-TCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAG
* * *
879719 ACAAACATGGATTCTAGTAATGATCTTGACTCTTTTTGTGATTAGGCACTATAAACACATTCTCC
390 ACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC
*
879784 TCATTACGATAAATGATATT
455 TCATTAGGATAAATGATATT
* * **
879804 GATGATTTTTTTTTGCATGTAAATCTTTTCTTTGCCCTACTTTCCTTTAAAAGAAAAATTCATCC
1 GATGA-TTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCC-TTAAAATCAAAATTCATCC
*
879869 CTTAAATATGACAAGCATCGA-T-TC-T--C-GT-T--A--C--TTCAAGATTAGGAACCAAGAA
64 CTTAAATATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAA
* * * * * *
879921 CATATTCCCTTTATTAGAAGAATACATGGCATTGATGCTTCGATGTCGCATGAAAAGGTTTTCTT
129 CACATTCCCTTCATTAG--G-ATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTT
*** * * * *
879986 TTTGCTGTTTTTGATAGAATCAAAGTTTGACTCTTAAATAAGACGAACATGAATAGCCATACTAA
191 TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAA
* * *
880051 ACCCCATTCTTTTCAGAATTAGGCACCATAAACATAGTCTTCTCAAAAGGATACACGATATTGAT
256 TCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGAT
* * ** * *
880116 GCTTTAGTTTCACAAGAAAGGCTTTCTTCCCACCAACATTTGTAAAGTCTAAGTTCATGCTTTAA
321 GCTTTGGTTTCGCAAGAAAGGCTTTCTT-CCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAA
* * *
880181 ATGAGGCAAACATGG-----A-T--T-ATCTTCAATT-ATTTTGTGATTAGGCATTATAATCACA
385 ATGAGACAAACATGGATTCTAGTAATGATCTTC-ATTCATTTTGTGATTAGGCACTATAAACACA
* *
880236 TTCTCCCCATTAGGATAAATGGTATT
449 TTCTCCTCATTAGGATAAATGATATT
* * * *
880262 GATGATTTCTTTAGCATGGAAACCTTTTCTTTGCCCTATTTTCCTTAAAATGAAAATTCATCCCT
1 GATGATTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCT
* * *
880327 TAAATATGACATGCATCGATTCTCGTAACAGTCTCCATTTTTTTCAAGATTCGGAACCAAGAACA
66 TAAATATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAACA
** * * *
880392 CATTCCCTTCATTAGGATACATGACATTGATGCTTTGGCATCTCAAGGAAAGGTTTTCTTTCCAA
131 CATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCAC
* * * ** * *
880457 CATTTTTGATAAAATCAAAATTTGTCTCTTAAATGTGACAAACAAGAATAGTCATACCAATCCCC
196 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCC
* * * *
880522 ATTCTTTTTAGGATTAGGCGCCATAAACATTGCCTTCTCATAAGGATACACGATATTGATGCTTT
261 ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTT
* * * * *
880587 GGTTTTGCAAGAAAGGCTTTCTTTCCACCAATTTTTGTCATGTCTAAGTTTATGCCTCAAATGAA
326 GGTTTCGCAAGAAAGGCTTTC-TTCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAG
* * * *
880652 ACAAACATGGATTCTAGTAATGATCTTGACTCTTTTTGTGATTAGGCACTATAAAAACATTCTCC
390 ACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC
*
880717 TCATTACGATAAATGATATT
455 TCATTAGGATAAATGATATT
* ** *
880737 GATGATTTTTTTTTCTTGCATGTAAATCTTTTCTTTGCCCTCCTTTCCTTTAAAATAAAAATTCA
1 GATGA---TTTTTT-TTGCATGGAAATCTTTTCTTTGCCCTATTTTCC-TTAAAATCAAAATTCA
*
880802 TCCCTTAAATATGACAAGCATCGA-T-TC-T--C-GT-T--A--C--TTCAAGATTAGGAACCAA
61 TCCCTTAAATATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAA
* * * * * * *
880854 GAACATATTCCCTTTATTAGAAGAATACATGGCATTGATGATTCGATGTCGCATGAAAAGGTTTT
126 GAACACATTCCCTTCATTAG--G-ATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTT
* * * *
880919 CTTTCCGCTGTTTTTGATAGAATCAAAGTTTGACTCTTAAATAAGACAAACATGAATAGCCATAC
188 CTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATAC
* * *
880984 TAAACCCCATTCTTTTCAGAATTAGGCACCATAAACATAGTCTTCTCAAAAGGATACACGATATT
253 TAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATT
* * ** *
881049 GATGCTTTAGTTTCACAAGAAAGGCTTTCTTCCCACCAACATTTGTAAAGTCTAAGTTCATGCTT
318 GATGCTTTGGTTTCGCAAGAAAGGCTTTCTT-CCACCAATTTTTGTAAAGTCTAAGTTCATGCCT
* * * *
881114 TAAATGAGGCAAACATGGA-T-TACGTAATGATCGTCAATT-ATTTTGTGATTAGGCACTATAAG
382 CAAATGAGACAAACATGGATTCTA-GTAATGATCTTC-ATTCATTTTGTGATTAGGCACTATAAA
** *
881176 CACATTCTTTTCATTAGGATAAATGATTTT
445 CACATTCTCCTCATTAGGATAAATGATATT
* * * * * * *
881206 GATGATTTTCTTTTGCTTGGAAATATATCCTTTACCCTATTTCCCTTAAAATCGAAATTCATCCC
1 GATGATTTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCC
* * * * *
881271 TTAAATATGATAAGCATCGATTCTCGTAATAGTCTCTATTTTTTTCAAGATTGGGAACTAAGAAC
65 TTAAATATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAAC
* * * * *
881336 ATATTCCCTTCATTAAGATACATGACATTGATGCTTTGGTATCTCAAGAAAAAGTTTTCTTTCCA
130 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCA
* * * * * * *
881401 CCCTTTTTAATAGAATCAAAATTTGTCTCCTAAATATGACAAACAAGAATAGTCATACTAATTCC
195 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCC
* * * *
881466 CATTCTTTTCAGGATTAGTCACTATAAATATAGTCTTCTCATAAGGATACACAATATTGATGCTT
260 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTT
* * * * *
881531 TGGTTTCGCAAGAAAGGCTTTCTTTCCACCAATTTTTGGTCATGTCTAAGTTCGTTCCTGAAATG
325 TGGTTTCGCAAGAAAGGCTTTC-TTCCACCAATTTTT-GTAAAGTCTAAGTTCATGCCTCAAATG
* *
881596 AGACAAATATGGATTCTAGTAATGATCTTCACTCATTTTGTGATTAGGCACTATAAACACATTCT
388 AGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT
*
881661 CCCCATTAGGATAAATGATATT
453 CCTCATTAGGATAAATGATATT
* * * * * * *
881683 GATGATTTGTTTTGAATGGAAATCTTTACTTTGCCCTATTTTCATCAAAATCAATATTCA-CACA
1 GATGATTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATC-CC
* * * * * *
881747 TTAACTATGACAAGCATTGATTCCCATAACAGTCTCCATTCTTTTAAAGATTGTGAACCAAGAAC
65 TTAAATATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAAC
* * * * * * *
881812 ACATTTCCTTCATTAGGATACAAGACATTCATGCTTTGATATCG-TAGTAAAAGCTTTTCTTTCC
130 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAG-AAAAGGTTTTCTTTCC
* *
881876 A-CGATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA-ATGAATAGTCATACTAGTC
194 ACCG-TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATC
** * *
881939 CCTTTTCTTTTCAAGATTAGGCAGCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGC
258 CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGC
* * * *
882004 TTTGGCTTCGCAAGAAAGGCTTTCTTCCACC-ATTATTTGTAAAGTCTAAGTTCGTGGCTCAAAA
323 TTTGGTTTCGCAAGAAAGGCTTTCTTCCACCAATT-TTTGTAAAGTCTAAGTTCATGCCTCAAAT
* * * ** * * *
882068 GAGACAAACATGGAATATAATAATGATCTTTTTTTATTTTGTGATTAGGCACCATAAACTCATTC
387 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* *
882133 GCCTTATTAGGATAAATGATATT
452 TCCTCATTAGGATAAATGATATT
* * * * * * * * *
882156 AACGATTTTATTTAGCATGGAAATCATTTCTTTACTCAATTTTCCTTAAAAT-AACAATTTACCC
1 GATGATTTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA-AATTCATCC
* * * * ** *
882220 CTAAAATATAACAAGCATTGATTCTCATATTA-TCTCCATTCTTTTCAATATTGGGAACCAAGAA
64 CTTAAATATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAA
* * *
882284 CACATTCCCTTCATTAGGATACATGACATTGATCCTTTGGTGTTGCAAGAAAAGGTTTTCTTTGC
129 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCC
* *
882349 ACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATTCTAATCC
194 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCC
* ** * * *
882414 CTATTCTTTTCAATATTAGGCACCATAAACATAGTCTTTTCATTAA-GATATATG--ATTGATGC
259 CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGATATTGATGC
* * * *
882476 TTTGGTTTCGCAAGAAGGGCTTTTTTCCCACCAA-TTTTGTAAAGTCTAAGTTCGTGCCTTAAAT
323 TTTGGTTTCGCAAGAAAGGCTTTCTT-CCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAT
* * * * * *
882540 GAGACAAACATTGATTCTAGGAATGGTCTTCATTCATTTTGTGATTATGCACCATAAACATATTC
387 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* *
882605 TCCT-AGTTAGGATAAATAATACT
452 TCCTCA-TTAGGATAAATGATATT
* * * * * *
882628 GATGATTTTCTTTTGGATGTAAATCTTTT-TTTTCCCTATTTTCCTCAAAATCACAGTTCATCCC
1 GATGATTTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCC
* * ** * ** * * * *
882692 ATAAAAAAAACAAGCATCTATTCTCACAACAGCCTACATT-TTCTTCAAGATTGGGATCTAAGAA
65 TTAAATATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTT-TTCAAGATTGGGAACCAAGAA
* * * ** *
882756 CACATTCTCTTCGTTAGGATACTTGACATTGATGCTTTGGTGTCATAAGAAATGGTTTTCTTTCC
129 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCC
* * * *
882821 -CTCGTTTTTGATAGAATCAAAGTTTATGTCTTAAATAA-AAAAACATGAATAGTCAAAGC-AAT
194 AC-CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATA-CTAAT
* * * *
882883 CCCCATTCTTTTCAGGATTAAGCACCTTAAACATAGTATTCTCATAAGGATACACTATATTGA--
257 CCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATG
* * * * ** *
882946 CATATTGGTTTCACAAGAAAGGCTTTCTTCTCACTAATTTTTATAAAATCTAAGTTTTTACCTCA
322 C-T-TTGGTTTCGCAAGAAAGGCTTTCTTC-CACCAATTTTTGTAAAGTCTAAGTTCATGCCTCA
* * * *
883011 AATGAGACAAACATGGATTTTGGTAA-GTATCTTCTTTCATTTTGTGTTTAGGCACTATAAACAC
384 AATGAGACAAACATGGATTCTAGTAATG-ATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
* * *
883075 ATTCTCCTTATTAGCATAAATGATTTT
448 ATTCTCCTCATTAGGATAAATGATATT
* * * * * * *
883102 GATGGTTTTCATTTGCATGAAAAGCTTCTCTTTGCCCTATTCTCCTTAAAATCAAAGTTCATCCC
1 GATGATTTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCC
* * *** * * *
883167 TTAAAAAAGGTGAGCATTC-ATTCTCGTAACAATCTCCACTCTTTTCAAGATTGGGAACTAA-AA
65 TTAAATATGACAAGCA-TCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAA
* * *
883230 CCACATTCCCTTCATTAGGATACATGACATTGACT-TTTTGGGGTTGCAAGAAAAGGTTTTCTTT
129 -CACATTCCCTTCATTAGGATACATGACATTGA-TGCTTTGGTGTCGCAAGAAAAGGTTTTCTTT
* * * *
883294 CCACCATTTCTT-ATAGAATTAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCAAAATAA
192 CCACCGTTT-TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAA
** * * ** *
883358 TCCCCATTCTTTTCAGGATTACACACCATAAAAATAGTTTTCTTGTAAGGATACCCGATATTGAT
256 TCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGAT
883423 GCTTTGGTTT
321 GCTTTGGTTT
883433 TCTCGTAAGA
Statistics
Matches: 7314, Mismatches: 1245, Indels: 471
0.81 0.14 0.05
Matches are distributed among these distances:
442 30 0.00
444 1 0.00
445 1 0.00
446 16 0.00
447 78 0.01
448 6 0.00
449 4 0.00
450 1 0.00
451 1 0.00
453 1 0.00
454 1 0.00
455 2 0.00
456 39 0.01
457 97 0.01
458 140 0.02
459 268 0.04
460 4 0.00
461 64 0.01
462 251 0.03
463 98 0.01
464 110 0.02
465 74 0.01
466 311 0.04
467 467 0.06
468 7 0.00
469 121 0.02
470 286 0.04
471 307 0.04
472 617 0.08
473 479 0.07
474 999 0.14
475 1264 0.17
476 727 0.10
477 295 0.04
478 68 0.01
479 41 0.01
480 38 0.01
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (474 bp):
GATGATTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCT
TAAATATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAACA
CATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCAC
CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCC
ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTT
GGTTTCGCAAGAAAGGCTTTCTTCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGA
CAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCT
CATTAGGATAAATGATATT
Found at i:884930 original size:14 final size:14
Alignment explanation
Indices: 884911--884938 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
884901 GTGTTTATAG
884911 TGCCTAATCACAAA
1 TGCCTAATCACAAA
884925 TGCCTAATCACAAA
1 TGCCTAATCACAAA
884939 ATGATTAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.29, G:0.07, T:0.21
Consensus pattern (14 bp):
TGCCTAATCACAAA
Found at i:886414 original size:476 final size:475
Alignment explanation
Indices: 885178--895112 Score: 10561
Period size: 475 Copynumber: 20.9 Consensus size: 475
885168 GTGGAATTGT
* * * * **
885178 TTTTAAGGAAAATAGAACAAAGAATAGATTTTCAAGCAAAAGAAAATCATTAATATCATTTTTTG
1 TTTTAAGGAAAATAGAGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTTTCC
* * * * *
885243 TAATGAGCAGAATTTGTTTA-AGTGCCTAATCACAGAACGAATGAAGATCATTACTAGAACCCAT
66 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* *
885307 GTTTGTCTTATTT-ATGGCACGAACTTAGACTTTTACAAAAATTGGTGAGAAGAAAGCCTTTCTT
131 GTTTGTCTCATTTGA-GGCACGAACTTAGAC-TTTACAAAAATTGGTGGGAAGAAAGCCTTTCTT
* ** * * * * *
885371 GTGAAACCAAAGTGTCAATATCGTGTATCCTTTTTGATAAGATTATGTTTATGGAGCCTTATCCT
194 GCGAAACCAAAGCATCAATATCGTGTATCC-TTATGAGAAGACTATGTTTATGGTGCCTAATCCT
* * * * * **
885436 GAAAAGATTGGGACTTAGTAGGACTATTCATGGTTGTCTTATTTATGAGATAAACTTTGATAATA
258 GAAAAGAATGGGA-TTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
** * *
885501 TCAAAAACGGTGGAAAGAATTGCTTTTCTTGCGACACCAAAGCGTCAATGTCATGTATCCTAATA
322 TCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG
* * * * * *
885566 AAGGGAATGTGGTCTTGGTTCCCAATCTTGAAAAAAATGGAAATTATTATGAGAAACGATGCTTG
387 AAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTG
* *
885631 CCATATTTAAGGGATGAATATTGA
452 TCATATTTAAGGGATGAATTTTGA
* * * *
885655 TGTTAA-GAAAAGTAGGGCAATA-AAAAGATTTTCATGCAAAAGAAAATCATTAATATCATTTAT
1 TTTTAAGGAAAA-TAGAGCAA-AGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTTT
* * * *
885718 CATAATGAGGAGAATGTGTTTATAGTGTCTAATCACAAAATGACTGAAAATCATTACTAGAATCC
64 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* * * * *
885783 ATGTTTCTCTTATTTGAGGCACGAACTTAGACTTTACAAAATTTGGTGGGAAAAAAGCCTTTCGT
129 ATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTT
* ** * ** * * * *
885848 ACGAAACCAAAGTGTTAATATTATGTATCCTTTTGAGAAGACTATGCTCATGGTGCCTAATCTTG
194 GCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTG
* * * * *
885913 AAAAAAATGTGGATTAGTCTGACTATTCATTTTTGTCTTATTTAAGAGACAAACTTTAATTCTGT
259 AAAAGAATG-GGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * * * *
885978 TAAAAAAGGTGGGAAGAAAAGCTTTTATTGCGATACCAAAGCATCAATGTCATGTATCCTAATGA
323 CAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGA
* * * * * * *
886043 A-TGAATGTGTTCTTCGTTCCCAATCTTAAAAAGAATAGAGACTGTTATGATAATCAATGCTTTT
388 AGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGT
* * *
886107 CCTATTTAAGGAATGAATTTTGT
453 CATATTTAAGGGATGAATTTTGA
* * * *
886130 TTTTAAGGAAAATACAGCAAAGAATAGATTTGT-AGGCAAAAAAAAATCATCAATATCATTTTTC
1 TTTTAAGGAAAATAGAGCAAAGAAAAGATTT-TCATGCAAAAGAAAATCATCAATATCATTTTTC
* * * * * *
886194 CTAATCAAGAGAATATGTTTA-AGTGCATAATCACAAAACGAATGAAGATCATTACTAGAACCCA
65 CTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
* ** * * *
886258 TGTTTATCTTGTTTGAGGCACGAACTTAGACTTTTATAGAAATTAGTGGGAAGAAAGCCTTTCTT
130 TGTTTGTCTCATTTGAGGCACGAACTTAGAC-TTTACAAAAATTGGTGGGAAGAAAGCCTTTCTT
* * * * * * *
886323 GCAAAACCAAAGCATCAATATCATGTATCATTTTTGATAAGATTATGTTTATGGAGCCTAATCCT
194 GCGAAACCAAAGCATCAATATCGTGTATC-CTTATGAGAAGACTATGTTTATGGTGCCTAATCCT
* * * **
886388 GAAAAGAATAGGGATTAGTATGACTATTCATGGTTGTCTTATTTATGAGATAAACTTTGATAATA
258 GAAAAGAAT-GGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
* * * * * * *
886453 TCAAAAACAGTGCAAAGAAATGGTTTTCTTGCGACACCAAAGCGTCAATGTCATGTATCGTAATA
322 TCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG
* * * * *
886518 AAGCGAATGTGGTCTTGGTTCCCAATCTTGAAAAAAAAAATGGAGATTGTTATGAGAAACGATGC
387 AAGGGAATGTGTTCTTGGTTCCCAATCTTG---AAAAGAATGGAGACTGTTATGAGAATCGATGC
* *
886583 TTGCCATATTTAAGGGATTAATTTTGA
449 TTGTCATATTTAAGGGATGAATTTTGA
* * * * *
886610 TTTTGAGGAAAGTAGGGCAAAGAAAAGATTTTCATG-AAAAAAAAATCATTAATATCATTTATT-
1 TTTTAAGGAAAATAGAGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTT-TTC
* * * * *
886673 GTAATGAGGAGTATATGTTTATAGTGCCTAATCACAAAATGACTGAAGATCATTACTTGAATCCA
65 CTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
* * * * * * *
886738 TGTTTCTTTCATTTGAGGCATGAACTTAGACTTTACCAAATTTGGTGGGAAGAAAGCGTTTCATG
130 TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTG
* ** * * * *
886803 TGAAACCAAAGTGTCAATATCATGTATCCTT-TCGAGAGGACTATGTTCATGGTGCCTAATCCTA
195 CGAAACCAAAGCATCAATATCGTGTATCCTTAT-GAGAAGACTATGTTTATGGTGCCTAATCCTG
* * * * *
886867 AAAAAAATGTGGATTAGTCTAACTATTCATTTTTGTCTTATTTAAGAGACAAACTTTAATTCTAT
259 AAAAGAATG-GGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * * *
886932 CTAAAACGGTGGAAAGAAAAGGTTTT-TTAGCGATACCAAAGCATCAACGTCATGTATCCTAATG
323 CAAAAACGGTGGAAAGAAAAGCTTTTCTT-GCGACACCAAAGCATCAATGTCATGTATCCTAATG
* * ** * *
886996 AAGGGAATGTGTTCTTGGTTCCTAGTCTTGAAAAGGGTGGAGACTGTTTTGAGAATTGATGCTTG
387 AAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTG
* *
887061 TCCTATTTAAGGGATGAATTTTGT
452 TCATATTTAAGGGATGAATTTTGA
* * * * *
887085 TTTTATGGAAAATAGAGCAAGGAACAGATTTCCAGGCAAAAGAAAATCATCAATATCATTTTTCC
1 TTTTAAGGAAAATAGAGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTTTCC
** * *
887150 TAAAAAGGAGAATTTGTTTA-AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAA
66 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* * * * * * *
887214 GTTTATCTCATTTG-GGACACGAACTTAGACTTTATAGAAATTAGTGAGAAGAAAACATTTCTTG
131 GTTTGTCTCATTTGAGG-CACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTG
* * * * * *
887278 -GAAAACTAAAACATCAATATCGTGTATCCTTTTGAGAAGACTGTGTTCATGGTGCCTAATCTTG
195 CG-AAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTG
* * * * * * * *
887342 AAAAAAATGTAGATTAGTGTGACTATTTATTTTTATCTTATTTAAGAGATAAACTTTGATTCTAC
259 AAAAGAATG-GGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * * * *
887407 CAAAAACGGTTGAAAGAAAAGCTTTTATTGCGATACCAAAGCATCAATGTCAAGTATCCTAACGA
323 CAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGA
* * * * *
887472 AGGGAATGTGTTCTTGGTTCCTAATCTTGAAAAGAATGGAGACTATTATGAGAATTGATGGTTAT
388 AGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGT
* * *
887537 CATATTTAACGAATGAATGTTGA
453 CATATTTAAGGGATGAATTTTGA
* * *
887560 TTTTAAGGAAAATAGAGCAAAGAATAGATTTCCAGGCAAAAGAAAATCATCAATATCA-TTTTCC
1 TTTTAAGGAAAATAGAGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTTTCC
* * ** * *
887624 CAATGAGGAGAATTTGTTTA-AGTGCCTAATCACAAAACAAATGAAGATCATTACTAGAACCCTT
66 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
*
887688 GTTTGTCTTATTTGAGGCACGAACTTAGACTTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTG
131 GTTTGTCTCATTTGAGGCACGAACTTAGAC-TTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTG
* * * * *
887753 CAAAACCAAAGCATCAATATCGTGTATCCTTTTTGAGAAGACTATGTTCATGGTTCCTAATCTTG
195 CGAAACCAAAGCATCAATATCGTGTATCC-TTATGAGAAGACTATGTTTATGGTGCCTAATCCTG
* *
887818 AAAAGAATGGGGATTAGTATGACTATTCATTTTTGTCTTATGTAAGAGACAAACTTTGATTCTAT
259 AAAAGAAT-GGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * * * *
887883 CAAAAACGATTGAAAGAAAAGCTTTTTTTGTGATACCAAAGCATCAATGTCATGTATCCTAATGA
323 CAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGA
* * *
887948 AGAGAACGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGTTTGT
388 AGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGT
* *
888013 CATATTTTAGGGATAAATTTTGA
453 CATATTTAAGGGATGAATTTTGA
* * * * * * *
888036 TTTTTAGGAAAATAAAGCAAAGAATAGATTTCCAAGGAAAAGAAAATCGTCAATATCATTTTTCC
1 TTTTAAGGAAAATAGAGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTTTCC
* *
888101 TAATGAGGAGAATTTGTTTA-AGTGCCTAATCACAAAATGAATGAAGATCATTACTTGAA-CTCA
66 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC-CA
* * * *
888164 TGTTTGTCTCATTTAAGGCACGAACTTGGACTTTTCAAAAATTGGCGGGAAGAAAGCCTTTCTTG
130 TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTG
* * * * * *
888229 CAAAACCAAAACGTCAATATCGTGTATCCTTATGA-AATAACTATATTTATGGTGCCTAATCCTA
195 CGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAA-GACTATGTTTATGGTGCCTAATCCTG
* * * * *
888293 AAAAGAATAGGATTAGTATGACTATTCAAGTTTGTCATATTTAAGAGACAAGCTTTGATTGTATC
259 AAAAGAATGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
* * * * * *
888358 AAAAACAGTGGAAAGAAAAGCTTCTATTGCGATACCAAAGCATCAATGGCATGTATCCTATTGAA
324 AAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAA
** * * *
888423 GGGAATGTGTTCTTTCTTCGCAATCTTGAAAAGAATGGAAACTATTATGAGAATCGATGCTTGTC
389 GGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGTC
*
888488 ATATTTAAAGGATGAATTTTGA
454 ATATTTAAGGGATGAATTTTGA
* ** * * **
888510 TTTTAAGGAAAATAGAGCAAAGAATAGATTACCAAGCAAAAGAAAATCAACAATATCATTTACCC
1 TTTTAAGGAAAATAGAGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTTTCC
* * * * *
888575 TAATGAGGAGATTGTGTTTGTAGTGCCTAATCACAAAAAGAACGAAGATCATTACTAGAATCGAT
66 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* * * * * * *
888640 GTTTGTCTCCTTTAAGGCACAAACTTAGACTTTATAAAAATTGGCGGGAAGAAAGCCTTTTTTAC
131 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGC
* * * * * * *
888705 GAAACCAAAGCATCAATTTCATCTATCCTAATGAGATGACTATATTTATGGTGTCTAATCCTGAA
196 GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
* * * ** * *
888770 AATAATGGGGATTAGTATTACTATTCAAGTTTGTCTTATTTTGGAGACAAACTTTGACTCTATCC
261 AAGAAT-GGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
* * * * *** * *
888835 AAAATGGTAGAAAGAAAACCCTTTCTAAT-CTTGA--AAAGAATCAATGTCATGTATCCTAATAA
325 AAAACGGTGGAAAGAAAAGCTTTTCT--TGCGACACCAAAGCATCAATGTCATGTATCCTAATGA
* *
888897 AGGGAAT-TCGTTCTTGGTTCCCAATCTTGAAAGGAATGGAGACTGTTACGAGAATCGATGCTTG
388 AGGGAATGT-GTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTG
* * * *
888961 TCAAATTTAAGCGAAGAATTTTAA
452 TCATATTTAAGGGATGAATTTTGA
* * * * * *
888985 TTTTAAGAAAAATAGCGCAAAGAAAAGATTTTCATGCATAAGAAAATCTTAAATAT-TTTTTATC
1 TTTTAAGGAAAATAGAGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTT-TC
* * * * *
889049 CTAATGAGGAGATTGTGTTTATAGTGCCTAATCGCAAAACGAATGAAGATCTTTACTAGAATCAA
65 CTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
* * * * * ** * *
889114 TGTTTGTCGCATTTGAGGAATGGAA-TTAAACTTTACCAAAATTGG-CCGAAAAGAAGGCTTTCT
130 TGTTTGTCTCATTTGAGGCA-CGAACTTAGACTTTACAAAAATTGGTGGGAAGA-AAGCCTTTCT
* * * * * * * *
889177 TGTGAAACCAAAGCATTAATATCATGTATCCTAATGGGAAGATTATATTTATGGTGCCTAATCCA
193 TGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT
* * * *
889242 GAAAAGAATAGGGATTAGTATGAATATTTATGTTTGTCTTATTTAAGAGATAAACTTTGATTATA
258 GAAAAGAAT-GGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
* * * * *
889307 TCAAAAATGGTGGAAAGAAATGCTTTTCATGCAACACCAAAGCGTCAATGTCATGTATCCTAATG
322 TCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG
* * * * *
889372 AAGCGAATGTGTTCTTGGTTCCCAATCTAGAAAAAAATGGAGATTTTTATGAGAATCGATGCTTG
387 AAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTG
889437 TCATATTTAAGGGATGAATTTTGA
452 TCATATTTAAGGGATGAATTTTGA
* * * * * * * *
889461 TTTTAGGGAAAGTAGGGCATAGAAAAGATTTTCATGGAAAAAAAAATCATCAATATCATTTATCG
1 TTTTAAGGAAAATAGAGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTTTCC
* * *
889526 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGATTGAAGATCTTTACTAGAATCGAT
66 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* * * * * * * *
889591 GTTTGTCTCATTTCAAGCAGGAACTTAGACATTACAAAATTTGGTGGGAACAAAGCCTTTCATGT
131 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGC
* * * * * * *
889656 GAAACCAAAGCGTCAATATTGTGTATTCTTTTGAGAAGACTATGTTCACGGTGCCTAGTCCTGAA
196 GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
* * * * * * * *
889721 AAAAAGGTGGATTAGTTTGACTATTTATTTTTGTCTTATTTAAGAGATAAAATTTGATTCTTTCA
261 AAGAATG-GGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
* * * * * * *
889786 AAAACAGTTGAAAGAAAAGCTTTTATTGCTATACCAAAGCATCGATGTCTTGTATCCTAATGAAG
325 AAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAG
*
889851 TGG-ATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCAATGCTTGTC
390 -GGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGTC
889915 ATATTTAAGGGATGAATTTTGA
454 ATATTTAAGGGATGAATTTTGA
* * * * *
889937 TTTT-AGGAAAAATAGAGTAAAGAATAGATTTCCAAGCAAAAGAAAATTATCAATATCATTTTTC
1 TTTTAAGG-AAAATAGAGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTTTC
* *
890001 CTAATGAGGAGAATGTGTTTA-AGTGCCTAATTACAAAATGAATGAAGATCATTCCTAGAATCCA
65 CTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
* * * *
890065 TGTTTTTCTCACTTAAGGCACGAACTTAGACTTTATC-GAAATTGGTGGGAAGAAAGCCTTTCTT
130 TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA-CAAAAATTGGTGGGAAGAAAGCCTTTCTT
* * * * *
890129 GTGAAATCGAAGCGTCAATATCGTGTATCCTTATGAGAAGACTTTGTTTATGGTGCCTAAT-CTG
194 GCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT-
* * *
890193 GAAAAAAATGGGGATTAGTATGACTATTCAAGTTTGTCTTAGTTT-AGAGACAAACTTTGTTTCT
258 GAAAAGAAT-GGGATTAGTATGACTATTCATGTTTGTCTTA-TTTAAGAGACAAACTTTGATTCT
* * * * * *
890257 TTCAAAAACGATGGAAAGAAAACCATTTCTTGCGACACCAAAGCATTAATGTCATGTATCCTAAC
321 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
* * *
890322 AAAGGGAATTTGTTCTTGGTTCCCAA-CTTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCT
386 GAAGGGAATGTGTTCTTGGTTCCCAATC-TTGAAAAGAATGGAGACTGTTATGAGAATCGATGCT
* * *
890386 TATCAAATTTAAGGGAAGAATTTTGA
450 TGTCATATTTAAGGGATGAATTTTGA
* * * * *
890412 TTTTATGGAAAAT--CGCATAATGAAAAAATTTTCATGCAAAAGAAAATCATTAATAT-TTTTTA
1 TTTTAAGGAAAATAGAGCA-AA-GAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTT-
* * * * *
890474 TCCTAATGAGGAGAATGTTTTTATAGTACCTAATCACAAAACGAATAAAGATCTTTACTAGAAT-
63 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
* * * * * * * * * *
890538 CAGTGTTTGTCGCATTTAAAGCATGAAATTAGACTTTACCAAAATTGATGGGAAAAAAACGTTTC
128 CA-TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTC
* * * ** * *
890603 TTGTGAAACCAAAGCATCAATATCATGTATCCTAACAAGAAAAATAT-TTCTATGGTGCCTAATC
192 TTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTT-TATGGTGCCTAATC
* * * *
890667 TTGAAAATAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTC
256 CTGAAAAGAAT-GGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
* * * *
890732 TATCAAAAATGGTTGAAAGAAAAGCCTTTCTTGCGACACCAAAGCATCAATGTCATGTAAACCTA
320 TATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGT-ATCCTA
* * * * *
890797 ATGAAGGGAATGTGTTTTTGGTTCCTAATCTTGGAAAGAATGGAGACTGTTATGAGAGTCAATGC
384 ATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGC
* * ** *
890862 TTGCCTTATTTAAGGGAAAAACTTTGA
449 TTGTCATATTTAAGGGATGAATTTTGA
* * * * * *
890889 TTTTGAGGAAAATA-AGGCAAAGAAAATATTTTTCTTGCAAAAGAAAACCATCAATCTCATTTAT
1 TTTTAAGGAAAATAGA-GCAAAGAAAAGA-TTTTCATGCAAAAGAAAATCATCAATATCATTTTT
* * *
890953 CCTAATGAGGAGAATTTGTTTA-AGTGCCTAATCACAAAATGAATGAAGATCATCACTAGAATCT
64 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* * *
891017 ATGTTTGTTTTATTTG-GGTCACGAACTTAGACTTTACAAAAATTAGTGGGAATG-AAGCCTTTC
129 ATGTTTGTCTCATTTGAGG-CACGAACTTAGACTTTACAAAAATTGGTGGGAA-GAAAGCCTTTC
* * * * ** * *
891080 TTGTGAAACCACAGCGTCAGTATTTTGTATCCTTATGAGAAGACTGTGTTCATGGTGCCTAATCC
192 TTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCC
* * * *
891145 TG-AAA-AATGTGGACTAGTATGACTATTCATTTTTATCTTATTTAAGAGACAAACTTTAATTCT
257 TGAAAAGAATG-GGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* * * * * *
891208 ATAAAAAATGGTTGAAGGAAAAGCTTTTATTGCGATACCAAAGCATCAATGTCATGTATCCTAAT
321 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
* * * * * *
891273 GAAGAGAATGTGTTATCGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATAAGAATCAATGTTT
386 GAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTT
891338 GTCATATTTAAGGGATGAATTTTGA
451 GTCATATTTAAGGGATGAATTTTGA
** * * * *
891363 TTTTATCGAAAATAGAGCAAAGAATAGA-TTTC-TAG-GAAA-AAAATCGTCAATGTCATTTATT
1 TTTTAAGGAAAATAGAGCAAAGAAAAGATTTTCAT-GCAAAAGAAAATCATCAATATCATTT-TT
* *
891424 -CTAATGAGGAGAATGTCTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAAAATCC
64 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* * * * * * * *
891488 ATGTTAGTCTCATTTGAGGCATGAATTTAGACATTGCAATAATTGGTTGAAAGAAAGCCTTTCTT
129 ATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTT
* ***
891553 GC-AATGCCAAAGCATCAATAGAATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT
194 GCGAA-ACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT
* * * *
891617 AAAAAGAATGGGGATTAGTATGACTATTGATGTTTCTCTTATTTAAGAGACAAAACTTTTATTCT
258 GAAAAGAAT-GGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGAC-AAACTTTGATTCT
*
891682 ATCAAAAACGGT-GAAAGGAAAAGCTTTTCTTGCGGCACCAAAGCATCAATGTCATGTAT-CTAA
321 ATCAAAAACGGTGGAAA-GAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT-A
** * ** *
891745 ATGGTGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAAACTGTTCCGAGAATCGACGC
384 ATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGC
* *
891810 TTGCCATATTTAAGAGATGAATTTTGA
449 TTGTCATATTTAAGGGATGAATTTTGA
* * * * * *
891837 TTTTAAGAAAAATAGGGCAAAGAAAAGATTTTCATGAAAAAGAAAACCGTCAATGTCATTTATT-
1 TTTTAAGGAAAATAGAGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTT-TTC
* * * * * * ** *
891901 CTAATGAGGAGAATTTATTTATGGT-TCTAACCACAAAAAGAACAAAGATCATTTCTAGAATCCA
65 CTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
* * * *
891965 TGTTTGTCTCGTTTAAGGCACAAACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTG
130 TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTG
* * * * * * **
892030 TGAAATCAAAGCATCAATATCTTCTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATTTTG-
195 CGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGA
* * *
892094 AAAGCAATGGGCATTAGTGTGACTATTCGTGTTTGT-TGTATTTAAGAGACAAACTCTGATTCTA
260 AAAG-AATGGG-ATTAGTATGACTATTCATGTTTGTCT-TATTTAAGAGACAAACTTTGATTCTA
* * * *
892158 T-AAGAAATGGTGGAAAGAAAA-CATTTTCTT-----A-CGAAGCATCAATGTCGTGTATCATAA
322 TCAA-AAACGGTGGAAAGAAAAGC-TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAA
** * ** * ** ** *
892215 TGAAGGGAATGTAATCTTGTTTCCCAAAATTAAAAAGAATTAAGA-TAGTTACAAGAATCAATGC
385 TGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACT-GTTATGAGAATCGATGC
* * ** **
892279 TTGTCTTTTTTAAGGGATGAACATCAA
449 TTGTCATATTTAAGGGATGAATTTTGA
* ** * * * *
892306 TTTTATGGAAAACGGGGCAAAGAAAAGATTTTCATGCAAAA-AAAACCATCAATTTCATTTATCC
1 TTTTAAGGAAAATAGAGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTTTCC
** * * * * * *
892370 TAAAAAGAAGAATGCGTTTATAGTACCTAATCACAAAATGAATAAAGATAAATACTAGAATCCAT
66 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* * * ** *
892435 GTCTGTCTCATTTCAGGCACGAACTTACACTTTACAAAAATTGGTTTGAAGAAAGCCATTCTTGC
131 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGC
* * ** * * * *
892500 AAAACCAAAGCATTAATATCGTCAATCCTAAAGAGAAGACTATGTTTA-CGTGCCTAATCCTAAA
196 GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
* ** * ** * * * *
892564 AAGAATGGGGATTACTATGACTATTTGTGTCTACCTTATTTGAGTGACAAATTTTGACTCTAT-A
261 AAGAAT-GGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
** * * * *
892628 AAAATTAGTGGAAAGAAAACCTTCTCTT-CTGACCCCATAGCA-CTAATGTCATGTATCCTAATG
325 AAAA-CGGTGGAAAGAAAAGCTTTTCTTGC-GACACCAAAGCATC-AATGTCATGTATCCTAATG
* * * * * *
892691 AAGGGAAGGTTTTCTTGATTGCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTA
387 AAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTG
* * * ** *
892756 CCCT-TTTTAGTGGATGAAAGTTAA
452 TCATATTTAAG-GGATGAATTTTGA
* * *
892780 TTTTAAGAAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCC
1 TTTTAAGGAAAATAGAGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTTTCC
* * *
892845 TAAGGAGGAGAATGTGGTTACTA-TGCC-ATATCACAAAATGAATGAAGATCGTTACTAGAATCC
66 TAATGAGGAGAATGTGTTTA-TAGTGCCTA-ATCACAAAATGAATGAAGATCATTACTAGAATCC
* ** * * *
892908 ATGATTGTCTCATTT-ATGGCATAAACTTAGGCTTTACAAAAATTAGCGGGAAGAAAGCCTTTCT
129 ATGTTTGTCTCATTTGA-GGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCT
* *
892972 TGTGAAACCAAAGCATCAATATCGTGCATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT
193 TGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT
** * * *
893037 GAAAAGAATGGGATTAGTGCGACTATTCATGTTTGTATTATTTAAAAGGCAAACTTTGATTCTAT
258 GAAAAGAATGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * * * * *
893102 CAAAAACGATGGAAAGAAAAGCTATTCTTGTGACTCCAAAGCATCAATGCCATGTATCCAAATGA
323 CAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGA
* * * * * * * *
893167 TGGGAATGTGTTCTTAGTTTCTAGTCCTGAAAAAAATGGAGACTGTTAGGAGCAAT-GATGCTTG
388 AGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAG-AATCGATGCTTG
* *
893231 TCATTTTTAAGGGATGAACTTTGA
452 TCATATTTAAGGGATGAATTTTGA
* * * * *
893255 TTTTAAGGAAAATA-AGGCAAAAAAAAGATTTTCATGCAAAAAAAAAATCATCAGTATCACTTAT
1 TTTTAAGGAAAATAGA-GCAAAGAAAAGATTTTCATGC-AAAAGAAAATCATCAATATCATTTTT
* *
893319 CCTAATGAGGAGAATGTGTTTATAGTGCCTAGTCACAAAATGAATGAAGATCATTACTAGAATCA
64 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* * * *
893384 ATGTTTATCTCATTTGAGACACAAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCAT
129 ATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTT
* * * ** * * * *
893449 GTGAAACCCAAGCATCAATATCGTCTATCCCAACGAGAAGACTATGTTTACGGCGCCTTATCCT-
194 GCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTG
* * * ****
893513 AAATAAAATATGGATTAGTATGACTATTTATGTTCAAATTATTTAAGAGACAAACTTTGACTT-T
259 AAA-AGAAT-GGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA-TTCT
* * * * * *
893577 ATTAAAAATGGTGGAAAGAAAAGCTTTTCCTACGACACCAAAGCATCAATGTTATGTA-ACTAAA
321 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT-AA
* * * * * * * *
893641 TTATGGGAATGCGTTCTTGGTTCCCAATCTTGAAAAGAATAGAGATTGTT-TCGACAATTGACGC
385 TGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTAT-GAGAATCGATGC
* *
893705 TTGTCATATTTAAGAGATGAAATTTGA
449 TTGTCATATTTAAGGGATGAATTTTGA
* * * * *
893732 TTTTAAGGAAAATAGGGGAAAGAAAAGATTTTCATGCAAAAGAACACCATCAATATCATTTATCC
1 TTTTAAGGAAAATAGAGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTTTCC
* * * * * *
893797 TAA-GAAGGAGAATGTGTTTACAGTGCCTAGTCACAAAATGAATTAAAATCATTTCTAGACTCCA
66 TAATG-AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
* * * * * * * *
893861 TGTTTGTCTCATTTGAGGTACGAATTTAGGCATTGCAATAATTGGTTGAAAGTAAA-CCTTTCTT
130 TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAG-AAAGCCTTTCTT
** * ** ** * * *
893925 GCGATGCCAAAACATTTATATAATGTATCCTTACGTGAAGACTACGTTTATGGTGCCTAATCCTG
194 GCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTG
*
893990 AAAAGAATAGGGATTAGTATGACTATTCATGTTTCTCTTATTTAAGAGACAAAACTTTGATTCTA
259 AAAAGAAT-GGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGAC-AAACTTTGATTCTA
* * * * * *
894055 TGAAAAATGGTGGAAAGAAAAGCTTTTCCTACGACAGCAAAGCATCCATGTCATGTAT-CTAAAT
322 TCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT-AAT
*** * * * * *
894119 CTTGGGTATGTGTTCTTCGTTCCCAATCTTGAAAAAAATGGAGACTATT-TCAAGAATCGATGCT
386 GAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTAT-GAGAATCGATGCT
* *
894183 AGTCATATTT-AGAAGATGAATTTTGA
450 TGTCATATTTAAG-GGATGAATTTTGA
* * * * * * *
894209 TCTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATACAAAACAAAACCATTAATATCATTTATCC
1 TTTTAAGGAAAATAGAGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTTTCC
* * * * * * *
894274 TAATGAGAAGAATTTATTTATAGTACCTAATCACAAAATGAGTAAAGATCAATACTAGAATCCAT
66 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* * **
894339 GTTTGTCTCATTTCAGGCACGAACTTACACTTTACAAAAATTGGTTTGAAGAAAGCCTTTCTTGC
131 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGC
* ** * * * *
894404 AAAACCAAAG-AGTCAATATCGTCAATCCTAAAGAGAAGACTATGTTTA-CGTGCCTAATCTTGA
196 GAAACCAAAGCA-TCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGA
* * ** * * *
894467 AAAGAATGGGGATTACTATAACTATTTGTGTTTGCCTTATTTAAGTGACAAACTTTGACTCTAT-
260 AAAGAAT-GGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
* * * * *
894531 AAAAATCGGTGGAAAGAAAAACTTTTCTTGTGACCCCATAGCATTAATGTCATGTATCCTAATGA
324 AAAAA-CGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGA
* * ** * * * **
894596 AGAGAAGGTGTTCTTGGTAGCCAATCTTGAAAGGAATGGAGACTGTTACGAGAATCGATGCCTAC
388 AGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGT
* * *
894661 CTTTTTTAAGGGATGAAATTTGA
453 CATATTTAAGGGATGAATTTTGA
* * *** *
894684 TTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTTGTATCATTTAT-C
1 TTTTAAGGAAAATAGAGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTTTCC
* * * *
894748 T-ATAGAGGAGAATGTGTTTACTA-TGTCGAATCACAAAATGAGTGAAGATCGTTACTAGAATCC
66 TAAT-GAGGAGAATGTGTTTA-TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* * * ***
894811 ATGATTGTCTCATTT-ATGGCACGAACTTAGGCTTTACAAAAATTAGCAAGAAGAAAGCCTTTCT
129 ATGTTTGTCTCATTTGA-GGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCT
* * *
894875 TGCCAATCCAAAGCATCAATATCGTGCATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT
193 TGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT
* * * *
894940 GAAAAGAATGGGATT-GTGTGACTATTCATGTTTGTATTATTTAAAAGGCAAACTTTGATTCTAT
258 GAAAAGAATGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * * * * * *
895004 CAAAAACGATGGAAAGAAAAGCTGTTCATGCAACCCCAAAGCATCAATGTCATGTATCCAAATTA
323 CAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGA
* * * * *
895069 TGGGAATGTGTTCTTAGTTCCTAGTCCTGAAAAGAATGGAGACT
388 AGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACT
895113 ATTGCGCGCA
Statistics
Matches: 7910, Mismatches: 1382, Indels: 336
0.82 0.14 0.03
Matches are distributed among these distances:
467 4 0.00
468 110 0.01
469 263 0.03
470 40 0.01
471 144 0.02
472 10 0.00
473 177 0.02
474 994 0.13
475 2357 0.30
476 2225 0.28
477 1067 0.13
478 279 0.04
479 99 0.01
480 141 0.02
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (475 bp):
TTTTAAGGAAAATAGAGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTTTCC
TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGC
GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
AAGAATGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA
AAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGG
GAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGTCAT
ATTTAAGGGATGAATTTTGA
Found at i:887966 original size:951 final size:949
Alignment explanation
Indices: 885178--895115 Score: 10632
Period size: 951 Copynumber: 10.5 Consensus size: 949
885168 GTGGAATTGT
* * * * **
885178 TTTTAAGGAAAATAGAACAAAGAATAGATTTTCAAGCAAAAGAAAATCATTAATATCATTTTTTG
1 TTTTAAGGAAAATAGAGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTTTCC
* * * *
885243 TAATGAGCAGAATTTGTTTAAGTGCCTAATCACAGAACGAATGAAGATCATTACTAGAACCCATG
66 TAATGAGGAGAATTTGTTTAAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * *
885308 TTTGTCTTATTTATGGCACGAACTTAGACTTTTACAAAAATTGGTGAGAAGAAAGCCTTTCTTGT
131 TTTGTCTCATTT-GGGCACGAACTTAGAC-TTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGT
** * * * * *
885373 GAAACCAAAGTGTCAATATCGTGTATCCTTTTTGATAAGATTATGTTTATGGAGCCTTATCCTGA
194 GAAACCAAAGCATCAATATCGTGTATCC-TTATGAGAAGACTATGTTTATGGTGCCTAATCCTGA
* * * * * **
885438 AAAGATTGGGACTTAGTAGGACTATTCATGGTTGTCTTATTTATGAGATAAACTTTGATAATATC
258 AAAGAATGGGA-TTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
** * * *
885503 AAAAACGGTGGAAAGAATTGCTTTTCTTGCGACACCAAAGCGTCAATGTCATGTATCCTAATAAA
322 AAAAACGGTGGAAAGAAAAGCTTTTATTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAA
* * * * * *
885568 GGGAATGTGGTCTTGGTTCCCAATCTTGAAAAAAATGGAAATTATTATGAGAAACGATGCTTGCC
387 GGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTC
* *
885633 ATATTTAAGGGATGAATATTGATGTTAA-GAAAAGTAGGGCAATA-AAAAGATTTTCATGCAAAA
452 ATATTTAAGGGATGAATTTTGATTTTAAGGAAAA-TAGGGCAA-AGAAAAGATTTTCATGCAAAA
* * *
885696 GAAAATCATTAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTGTCTAATCACAAAATGA
515 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * * * *
885761 CTGAAAATCATTACTAGAATCCATGTTTCTCTTATTTGAGGCACGAACTTAGACTTTACAAAATT
580 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
* * * ** * * **
885826 TGGTGGGAAAAAAGCCTTTCGTACGAAACCAAAGTGTTAATATTATGTATCCTTTTGAGAAGACT
645 TGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACT
* * * * * *
885891 ATGCTCATGGTGCCTAATCTTGAAAAAAATGTGGATTAGTCTGACTATTCATTTTTGTCTTATTT
710 ATGTTCATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTT
* * * * * * *
885956 AAGAGACAAACTTTAATTCTGTTAAAAAAGGTGGGAAGAAAAGCTTTTATTGCGATACCAAAGCA
775 AAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* * * *
886021 TCAATGTCATGTATCCTAATGAA-TGAATGTGTTCTTCGTTCCCAATCTTAAAAAGAATAGAGAC
840 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGAC
* * * * *
886085 TGTTATGATAATCAATGCTTTTCCTATTTAAGGAATGAATTTTGT
905 TGTTATGAGAATCGATGCTTGTCCTATTTAAGGGATGAATTTTGA
* * * *
886130 TTTTAAGGAAAATACAGCAAAGAATAGATTTGT-AGGCAAAAAAAAATCATCAATATCATTTTTC
1 TTTTAAGGAAAATAGAGCAAAGAAAAGATTT-TCATGCAAAAGAAAATCATCAATATCATTTTTC
* * * * * *
886194 CTAATCAAGAGAATATGTTTAAGTGCATAATCACAAAACGAATGAAGATCATTACTAGAACCCAT
65 CTAATGAGGAGAATTTGTTTAAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* ** * * *
886259 GTTTATCTTGTTTGAGGCACGAACTTAGACTTTTATAGAAATTAGTGGGAAGAAAGCCTTTCTTG
130 GTTTGTCTCATTTG-GGCACGAACTTAGAC-TTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTG
** * * * * * *
886324 CAAAACCAAAGCATCAATATCATGTATCATTTTTGATAAGATTATGTTTATGGAGCCTAATCCTG
193 TGAAACCAAAGCATCAATATCGTGTATC-CTTATGAGAAGACTATGTTTATGGTGCCTAATCCTG
* * * **
886389 AAAAGAATAGGGATTAGTATGACTATTCATGGTTGTCTTATTTATGAGATAAACTTTGATAATAT
257 AAAAGAAT-GGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * * * * * * *
886454 CAAAAACAGTGCAAAGAAATGGTTTTCTTGCGACACCAAAGCGTCAATGTCATGTATCGTAATAA
321 CAAAAACGGTGGAAAGAAAAGCTTTTATTGCGACACCAAAGCATCAATGTCATGTATCCTAATGA
* * * * * *
886519 AGCGAATGTGGTCTTGGTTCCCAATCTTGAAAAAAAAAATGGAGATTGTTATGAGAAACGATGCT
386 AGGGAATGTGTTCTTGGTTCCCAATCTTG---AAAAGAATGGAGACTATTATGAGAATCGATGCT
* * * *
886584 TGCCATATTTAAGGGATTAATTTTGATTTTGAGGAAAGTAGGGCAAAGAAAAGATTTTCATG-AA
448 TGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAA
* * ** * *
886648 AAAAAAATCATTAATATCATTTATTGTAATGAGGAGTATATGTTTATAGTGCCTAATCACAAAAT
513 AAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAT
* * * * * *
886713 GACTGAAGATCATTACTTGAATCCATGTTTCTTTCATTTGAGGCATGAACTTAGACTTTACCAAA
578 GAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAA
* * * * ** * *
886778 TTTGGTGGGAAGAAAGCGTTTCATGTGAAACCAAAGTGTCAATATCATGTATCCT-TTCGAGAGG
643 ATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAAT-GAGAAG
* * * * * *
886842 ACTATGTTCATGGTGCCTAATCCTAAAAAAAATGTGGATTAGTCTAACTATTCATTTTTGTCTTA
707 ACTATGTTCATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTA
* * * *
886907 TTTAAGAGACAAACTTTAATTCTATCTAAAACGGTGGAAAGAAAAGGTTTT-TTAGCGATACCAA
772 TTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTT-GCGACACCAA
* * * **
886971 AGCATCAACGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCTAGTCTTGAAAAGGGTGG
836 AGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGG
* * *
887036 AGACTGTTTTGAGAATTGATGCTTGTCCTATTTAAGGGATGAATTTTGT
901 AGACTGTTATGAGAATCGATGCTTGTCCTATTTAAGGGATGAATTTTGA
* * * * *
887085 TTTTATGGAAAATAGAGCAAGGAACAGATTTCCAGGCAAAAGAAAATCATCAATATCATTTTTCC
1 TTTTAAGGAAAATAGAGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTTTCC
** *
887150 TAAAAAGGAGAATTTGTTTAAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAG
66 TAATGAGGAGAATTTGTTTAAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * * * * * *
887215 TTTATCTCATTTGGGACACGAACTTAGACTTTATAGAAATTAGTGAGAAGAAAACATTTCTTG-G
131 TTTGTCTCATTTGGG-CACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTG
* * * * * *
887279 AAAACTAAAACATCAATATCGTGTATCCTTTTGAGAAGACTGTGTTCATGGTGCCTAATCTTGAA
195 -AAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
* * * * * * * *
887344 AAAAATGTAGATTAGTGTGACTATTTATTTTTATCTTATTTAAGAGATAAACTTTGATTCTACCA
259 AAGAATG-GGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
* * * *
887409 AAAACGGTTGAAAGAAAAGCTTTTATTGCGATACCAAAGCATCAATGTCAAGTATCCTAACGAAG
323 AAAACGGTGGAAAGAAAAGCTTTTATTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAG
* * * *
887474 GGAATGTGTTCTTGGTTCCTAATCTTGAAAAGAATGGAGACTATTATGAGAATTGATGGTTATCA
388 GGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCA
* * * * * * *
887539 TATTTAACGAATGAATGTTGATTTTAAGGAAAATAGAGCAAAGAATAGATTTCCAGGCAAAAGAA
453 TATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAA
* * **
887604 AATCATCAATATCATTT-TCCCAATGAGGAGAATTTGTTTA-AGTGCCTAATCACAAAACAAATG
518 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* * *
887667 AAGATCATTACTAGAACCCTTGTTTGTCTTATTTGAGGCACGAACTTAGACTTTTACAAAAATTG
583 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAC-TTTACAAAAATTG
* * **
887732 GTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTTTTGAGAAGACTA
647 GTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCC-TAATGAGAAGACTA
* * * *
887797 TGTTCATGGTTCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCATTTTTGTCTTATGTA
711 TGTTCATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTA
* * * * *
887862 AGAGACAAACTTTGATTCTATCAAAAACGATTGAAAGAAAAGCTTTTTTTGTGATACCAAAGCAT
776 AGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
* *
887927 CAATGTCATGTATCCTAATGAAGAGAACGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACT
841 CAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACT
* * * *
887992 GTTATGAGAATCGATGTTTGTCATATTTTAGGGATAAATTTTGA
906 GTTATGAGAATCGATGCTTGTCCTATTTAAGGGATGAATTTTGA
* * * * * * *
888036 TTTTTAGGAAAATAAAGCAAAGAATAGATTTCCAAGGAAAAGAAAATCGTCAATATCATTTTTCC
1 TTTTAAGGAAAATAGAGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTTTCC
*
888101 TAATGAGGAGAATTTGTTTAAGTGCCTAATCACAAAATGAATGAAGATCATTACTTGAA-CTCAT
66 TAATGAGGAGAATTTGTTTAAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC-CAT
* * * * *
888165 GTTTGTCTCATTTAAGGCACGAACTTGGACTTTTCAAAAATTGGCGGGAAGAAAGCCTTTCTTGC
130 GTTTGTCTCATTT-GGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGT
* * * * * *
888230 AAAACCAAAACGTCAATATCGTGTATCCTTATGA-AATAACTATATTTATGGTGCCTAATCCTAA
194 GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAA-GACTATGTTTATGGTGCCTAATCCTGA
* * * * *
888294 AAAGAATAGGATTAGTATGACTATTCAAGTTTGTCATATTTAAGAGACAAGCTTTGATTGTATCA
258 AAAGAATGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
* * * * *
888359 AAAACAGTGGAAAGAAAAGCTTCTATTGCGATACCAAAGCATCAATGGCATGTATCCTATTGAAG
323 AAAACGGTGGAAAGAAAAGCTTTTATTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAG
** * *
888424 GGAATGTGTTCTTTCTTCGCAATCTTGAAAAGAATGGAAACTATTATGAGAATCGATGCTTGTCA
388 GGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCA
* * * ** *
888489 TATTTAAAGGATGAATTTTGATTTTAAGGAAAATAGAGCAAAGAATAGATTACCAAGCAAAAGAA
453 TATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAA
* * * * * *
888554 AATCAACAATATCATTTACCCTAATGAGGAGATTGTGTTTGTAGTGCCTAATCACAAAAAGAACG
518 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* * * * *
888619 AAGATCATTACTAGAATCGATGTTTGTCTCCTTTAAGGCACAAACTTAGACTTTATAAAAATTGG
583 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
* * * * * * *
888684 CGGGAAGAAAGCCTTTTTTACGAAACCAAAGCATCAATTTCATCTATCCTAATGAGATGACTATA
648 TGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATG
* * * * * **
888749 TTTATGGTGTCTAATCCTGAAAATAATGGGGATTAGTATTACTATTCAAGTTTGTCTTATTTTGG
713 TTCATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
* * * * * * *** *
888814 AGACAAACTTTGACTCTATCCAAAATGGTAGAAAGAAAACCCTTTCTAAT-CTTGA--AAAGAAT
778 AGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCT--TGCGACACCAAAGCAT
* *
888876 CAATGTCATGTATCCTAATAAAGGGAAT-TCGTTCTTGGTTCCCAATCTTGAAAGGAATGGAGAC
841 CAATGTCATGTATCCTAATGAAGGGAATGT-GTTCTTGGTTCCCAATCTTGAAAAGAATGGAGAC
* ** * * *
888940 TGTTACGAGAATCGATGCTTGTCAAATTTAAGCGAAGAATTTTAA
905 TGTTATGAGAATCGATGCTTGTCCTATTTAAGGGATGAATTTTGA
* * * * * *
888985 TTTTAAGAAAAATAGCGCAAAGAAAAGATTTTCATGCATAAGAAAATCTTAAATAT-TTTTTATC
1 TTTTAAGGAAAATAGAGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTT-TC
* * * *
889049 CTAATGAGGAG-ATTGTGTTTATAGTGCCTAATCGCAAAACGAATGAAGATCTTTACTAGAATCA
65 CTAATGAGGAGAATT-TGTTTA-AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* * * * * ** * *
889113 ATGTTTGTCGCATTTGAGGAATGGAA-TTAAACTTTACCAAAATTGG-CCGAAAAGAAGGCTTTC
128 ATGTTTGTCTCATTTG-GGCA-CGAACTTAGACTTTACAAAAATTGGTGGGAAGA-AAGCCTTTC
* * * * * *
889176 TTGTGAAACCAAAGCATTAATATCATGTATCCTAATGGGAAGATTATATTTATGGTGCCTAATCC
190 TTGTGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCC
* * * * *
889241 AGAAAAGAATAGGGATTAGTATGAATATTTATGTTTGTCTTATTTAAGAGATAAACTTTGATTAT
255 TGAAAAGAAT-GGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* * * *
889306 ATCAAAAATGGTGGAAAGAAATGCTTTTCA-TGCAACACCAAAGCGTCAATGTCATGTATCCTAA
319 ATCAAAAACGGTGGAAAGAAAAGCTTTT-ATTGCGACACCAAAGCATCAATGTCATGTATCCTAA
* * * * *
889370 TGAAGCGAATGTGTTCTTGGTTCCCAATCTAGAAAAAAATGGAGATTTTTATGAGAATCGATGCT
383 TGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGCT
* * * *
889435 TGTCATATTTAAGGGATGAATTTTGATTTTAGGGAAAGTAGGGCATAGAAAAGATTTTCATGGAA
448 TGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAA
* *
889500 AAAAAAATCATCAATATCATTTATCGTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAT
513 AAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAT
* * * * * * *
889565 GATTGAAGATCTTTACTAGAATCGATGTTTGTCTCATTTCAAGCAGGAACTTAGACATTACAAAA
578 GAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAA
* * * * * ** * **
889630 TTTGGTGGGAACAAAGCCTTTCATGTGAAACCAAAGCGTCAATATTGTGTATTCTTTTGAGAAGA
643 ATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGA
* * * * * *
889695 CTATGTTCACGGTGCCTAGTCCTGAAAA-AAAGGTGGATTAGTTTGACTATTTATTTTTGTCTTA
708 CTATGTTCATGGTGCCTAATCCTGAAAAGAATGG-GGATTAGTATGACTATTCATGTTTGTCTTA
* * * * * * * *
889759 TTTAAGAGATAAAATTTGATTCTTTCAAAAACAGTTGAAAGAAAAGCTTTTATTGCTATACCAAA
772 TTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
* *
889824 GCATCGATGTCTTGTATCCTAATGAAGTGG-ATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGG
837 GCATCAATGTCATGTATCCTAATGAAG-GGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGG
* *
889888 AGACTGTTATGAGAATCAATGCTTGTCATATTTAAGGGATGAATTTTGA
901 AGACTGTTATGAGAATCGATGCTTGTCCTATTTAAGGGATGAATTTTGA
* * * * *
889937 TTTT-AGGAAAAATAGAGTAAAGAATAGATTTCCAAGCAAAAGAAAATTATCAATATCATTTTTC
1 TTTTAAGG-AAAATAGAGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTTTC
* * *
890001 CTAATGAGGAGAATGTGTTTAAGTGCCTAATTACAAAATGAATGAAGATCATTCCTAGAATCCAT
65 CTAATGAGGAGAATTTGTTTAAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* ** *
890066 GTTTTTCTCACTTAAGGCACGAACTTAGACTTTATC-GAAATTGGTGGGAAGAAAGCCTTTCTTG
130 GTTTGTCTCA-TTTGGGCACGAACTTAGACTTTA-CAAAAATTGGTGGGAAGAAAGCCTTTCTTG
* * * *
890130 TGAAATCGAAGCGTCAATATCGTGTATCCTTATGAGAAGACTTTGTTTATGGTGCCTAAT-CTGG
193 TGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT-G
* * * *
890194 AAAAAAATGGGGATTAGTATGACTATTCAAGTTTGTCTTAGTTT-AGAGACAAACTTTGTTTCTT
257 AAAAGAAT-GGGATTAGTATGACTATTCATGTTTGTCTTA-TTTAAGAGACAAACTTTGATTCTA
* * * * * **
890258 TCAAAAACGATGGAAAGAAAACCATTTCTTGCGACACCAAAGCATTAATGTCATGTATCCTAACA
320 TCAAAAACGGTGGAAAGAAAAGCTTTTATTGCGACACCAAAGCATCAATGTCATGTATCCTAATG
* * *
890323 AAGGGAATTTGTTCTTGGTTCCCAA-CTTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTT
385 AAGGGAATGTGTTCTTGGTTCCCAATC-TTGAAAAGAATGGAGACTATTATGAGAATCGATGCTT
* * * * * *
890387 ATCAAATTTAAGGGAAGAATTTTGATTTTATGGAAAAT--CGCATAATGAAAAAATTTTCATGCA
449 GTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCA-AA-GAAAAGATTTTCATGCA
* ** * *
890450 AAAGAAAATCATTAATATTTTTTATCCTAATGAGGAGAATGTTTTTATAGTACCTAATCACAAAA
512 AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAA
* * * * * * * * *
890515 CGAATAAAGATCTTTACTAGAAT-CAGTGTTTGTCGCATTTAAAGCATGAAATTAGACTTTACCA
577 TGAATGAAGATCATTACTAGAATCCA-TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAA
* * * * * **
890579 AAATTGATGGGAAAAAAACGTTTCTTGTGAAACCAAAGCATCAATATCATGTATCCTAACAAGAA
641 AAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAA
* * * * * *
890644 AAATAT-TTCTATGGTGCCTAATCTTGAAAATAATAGGGATTAGTATGAGTATTCATGTTTGTCT
706 GACTATGTTC-ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCT
* * * *
890708 TATTTAAGAGATAAACTTTGATTCTATCAAAAATGGTTGAAAGAAAAGCCTTTCTTGCGACACCA
770 TATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCA
* * * *
890773 AAGCATCAATGTCATGTAAACCTAATGAAGGGAATGTGTTTTTGGTTCCTAATCTTGGAAAGAAT
835 AAGCATCAATGTCATGT-ATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAAT
* * ** *
890838 GGAGACTGTTATGAGAGTCAATGCTTG-CCTTATTTAAGGGAAAAACTTTGA
899 GGAGACTGTTATGAGAATCGATGCTTGTCC-TATTTAAGGGATGAATTTTGA
* * * * * *
890889 TTTTGAGGAAAATA-AGGCAAAGAAAATATTTTTCTTGCAAAAGAAAACCATCAATCTCATTTAT
1 TTTTAAGGAAAATAGA-GCAAAGAAAAGA-TTTTCATGCAAAAGAAAATCATCAATATCATTTTT
* *
890953 CCTAATGAGGAGAATTTGTTTAAGTGCCTAATCACAAAATGAATGAAGATCATCACTAGAATCTA
64 CCTAATGAGGAGAATTTGTTTAAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
* * *
891018 TGTTTGTTTTATTTGGGTCACGAACTTAGACTTTACAAAAATTAGTGGGAATG-AAGCCTTTCTT
129 TGTTTGTCTCATTTGGG-CACGAACTTAGACTTTACAAAAATTGGTGGGAA-GAAAGCCTTTCTT
* * * ** * *
891082 GTGAAACCACAGCGTCAGTATTTTGTATCCTTATGAGAAGACTGTGTTCATGGTGCCTAATCCTG
192 GTGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTG
* * * *
891147 -AAA-AATGTGGACTAGTATGACTATTCATTTTTATCTTATTTAAGAGACAAACTTTAATTCTAT
257 AAAAGAATG-GGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * * * *
891210 AAAAAATGGTTGAAGGAAAAGCTTTTATTGCGATACCAAAGCATCAATGTCATGTATCCTAATGA
321 CAAAAACGGTGGAAAGAAAAGCTTTTATTGCGACACCAAAGCATCAATGTCATGTATCCTAATGA
* * * * * * *
891275 AGAGAATGTGTTATCGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATAAGAATCAATGTTTGT
386 AGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGT
** * * *
891340 CATATTTAAGGGATGAATTTTGATTTTATCGAAAATAGAGCAAAGAATAGA-TTTC-TAG-GAAA
451 CATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCAT-GCAAAA
* * * *
891402 -AAAATCGTCAATGTCATTTATTCTAATGAGGAGAATGTCTTTATAGTGCCTAATCACAAAATGA
515 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * * * * * *
891466 ATGAAGATCATTACTAAAATCCATGTTAGTCTCATTTGAGGCATGAATTTAGACATTGCAATAAT
580 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
* * * ** *
891531 TGGTTGAAAGAAAGCCTTTCTTGC-AATGCCAAAGCATCAATAGAATGTATCCTTATGAGAAGAC
645 TGGTGGGAAGAAAGCCTTTCTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAATGAGAAGAC
* * * *
891595 TATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTGATGTTTCTCTTATT
709 TATGTTCATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATT
* *
891660 TAAGAGACAAAACTTTTATTCTATCAAAAACGGT-GAAAGGAAAAGCTTTTCTTGCGGCACCAAA
774 TAAGAGAC-AAACTTTGATTCTATCAAAAACGGTGGAAA-GAAAAGCTTTTCTTGCGACACCAAA
**
891724 GCATCAATGTCATGTAT-CTAAATGGTGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGG
837 GCATCAATGTCATGTATCCT-AATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGG
* ** * *
891788 AAACTGTTCCGAGAATCGACGCTTG-CCATATTTAAGAGATGAATTTTGA
901 AGACTGTTATGAGAATCGATGCTTGTCC-TATTTAAGGGATGAATTTTGA
* * * * * *
891837 TTTTAAGAAAAATAGGGCAAAGAAAAGATTTTCATGAAAAAGAAAACCGTCAATGTCATTTATT-
1 TTTTAAGGAAAATAGAGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTT-TTC
* * * * * ** *
891901 CTAATGAGGAGAATTTATTTATG-GTTCTAACCACAAAAAGAACAAAGATCATTTCTAGAATCCA
65 CTAATGAGGAGAATTTGTTTAAGTG-CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
* * * *
891965 TGTTTGTCTCGTTTAAGGCACAAACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTG
129 TGTTTGTCTCATTT-GGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTG
* * * * * **
892030 TGAAATCAAAGCATCAATATCTTCTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATTTTG-
193 TGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGA
* * *
892094 AAAGCAATGGGCATTAGTGTGACTATTCGTGTTTGT-TGTATTTAAGAGACAAACTCTGATTCTA
258 AAAG-AATGGG-ATTAGTATGACTATTCATGTTTGTCT-TATTTAAGAGACAAACTTTGATTCTA
* * * * *
892158 T-AAGAAATGGTGGAAAGAAAA-CATTTTCTT-----A-CGAAGCATCAATGTCGTGTATCATAA
320 TCAA-AAACGGTGGAAAGAAAAGC-TTTTATTGCGACACCAAAGCATCAATGTCATGTATCCTAA
** * ** * ** ** *
892215 TGAAGGGAATGTAATCTTGTTTCCCAAAATTAAAAAGAATTAAGA-TAGTTACAAGAATCAATGC
383 TGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTA-TTATGAGAATCGATGC
* * ** ** * **
892279 TTGTCTTTTTTAAGGGATGAACATCAATTTTATGGAAAACGGGGCAAAGAAAAGATTTTCATGCA
447 TTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCA
* * ** * * *
892344 AAA-AAAACCATCAATTTCATTTATCCTAAAAAGAAGAATGCGTTTATAGTACCTAATCACAAAA
512 AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAA
* * * * * *
892408 TGAATAAAGATAAATACTAGAATCCATGTCTGTCTCATTTCAGGCACGAACTTACACTTTACAAA
577 TGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAA
** * * * * ** *
892473 AATTGGTTTGAAGAAAGCCATTCTTGCAAAACCAAAGCATTAATATCGTCAATCCTAAAGAGAAG
642 AATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAG
* * * * ** * **
892538 ACTATGTTTA-CGTGCCTAATCCTAAAAAGAATGGGGATTACTATGACTATTTGTGTCTACCTTA
707 ACTATGTTCATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTA
* * * * ** * * *
892602 TTTGAGTGACAAATTTTGACTCTAT-AAAAATTAGTGGAAAGAAAACCTTCTCTT-CTGACCCCA
772 TTTAAGAGACAAACTTTGATTCTATCAAAAA-CGGTGGAAAGAAAAGCTTTTCTTGC-GACACCA
* * * * *
892665 TAGCA-CTAATGTCATGTATCCTAATGAAGGGAAGGTTTTCTTGATTGCCAATCTTGAAAAGAAT
835 AAGCATC-AATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAAT
* ** * ** *
892729 GGAGACTATTATGAGAATCGATGCTTACCCT-TTTTAGTGGATGAAAGTTAA
899 GGAGACTGTTATGAGAATCGATGCTTGTCCTATTTAAG-GGATGAATTTTGA
* * *
892780 TTTTAAGAAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCC
1 TTTTAAGGAAAATAGAGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTTTCC
* * * *
892845 TAAGGAGGAGAATGTGGTTACTA-TGCC-ATATCACAAAATGAATGAAGATCGTTACTAGAATCC
66 TAATGAGGAGAATTTGTTTA--AGTGCCTA-ATCACAAAATGAATGAAGATCATTACTAGAATCC
* * ** * * *
892908 ATGATTGTCTCATTTATGGCATAAACTTAGGCTTTACAAAAATTAGCGGGAAGAAAGCCTTTCTT
128 ATGTTTGTCTCATTT-GGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTT
*
892973 GTGAAACCAAAGCATCAATATCGTGCATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTG
192 GTGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTG
** * * *
893038 AAAAGAATGGGATTAGTGCGACTATTCATGTTTGTATTATTTAAAAGGCAAACTTTGATTCTATC
257 AAAAGAATGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
* * * * * * * *
893103 AAAAACGATGGAAAGAAAAGCTATTCTTGTGACTCCAAAGCATCAATGCCATGTATCCAAATGAT
322 AAAAACGGTGGAAAGAAAAGCTTTTATTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAA
* * * * * * * *
893168 GGGAATGTGTTCTTAGTTTCTAGTCCTGAAAAAAATGGAGACTGTTAGGAGCAAT-GATGCTTGT
387 GGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTATGAG-AATCGATGCTTGT
* * * *
893232 CATTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAAAAAAGATTTTCATGCAAAAA
451 CATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGC-AAAA
* * * *
893297 AAAAATCATCAGTATCACTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAGTCACAAAATGA
515 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * * *
893362 ATGAAGATCATTACTAGAATCAATGTTTATCTCATTTGAGACACAAACTTAGACTTTACAAAAAT
580 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
* * * * * * *
893427 TGGTGGGAAGAAAGCCTTTCATGTGAAACCCAAGCATCAATATCGTCTATCCCAACGAGAAGACT
645 TGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACT
* * * * * ** * ****
893492 ATGTTTACGGCGCCTTATCCT-AAATAAAATATGGATTAGTATGACTATTTATGTTCAAATTATT
710 ATGTTCATGGTGCCTAATCCTGAAA-AGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATT
* * * *
893556 TAAGAGACAAACTTTGACTT-TATTAAAAATGGTGGAAAGAAAAGCTTTTCCTACGACACCAAAG
774 TAAGAGACAAACTTTGA-TTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
* * * * * *
893620 CATCAATGTTATGTA-ACTAAATTATGGGAATGCGTTCTTGGTTCCCAATCTTGAAAAGAATAGA
838 CATCAATGTCATGTATCCT-AATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGA
* * * * * * *
893684 GATTGTT-TCGACAATTGACGCTTGTCATATTTAAGAGATGAAATTTGA
902 GACTGTTAT-GAGAATCGATGCTTGTCCTATTTAAGGGATGAATTTTGA
* * * * *
893732 TTTTAAGGAAAATAGGGGAAAGAAAAGATTTTCATGCAAAAGAACACCATCAATATCATTTATCC
1 TTTTAAGGAAAATAGAGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTTTCC
* * * * * *
893797 TAA-GAAGGAGAATGTGTTTACAGTGCCTAGTCACAAAATGAATTAAAATCATTTCTAGACTCCA
66 TAATG-AGGAGAATTTGTTTA-AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
* * * * * * * *
893861 TGTTTGTCTCATTTGAGGTACGAATTTAGGCATTGCAATAATTGGTTGAAAGTAAA-CCTTTCTT
129 TGTTTGTCTCATTTG-GGCACGAACTTAGACTTTACAAAAATTGGTGGGAAG-AAAGCCTTTCTT
* ** * ** ** * * *
893925 GCGATGCCAAAACATTTATATAATGTATCCTTACGTGAAGACTACGTTTATGGTGCCTAATCCTG
192 GTGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTG
*
893990 AAAAGAATAGGGATTAGTATGACTATTCATGTTTCTCTTATTTAAGAGACAAAACTTTGATTCTA
257 AAAAGAAT-GGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGAC-AAACTTTGATTCTA
* * ** * * *
894055 TGAAAAATGGTGGAAAGAAAAGCTTTTCCTACGACAGCAAAGCATCCATGTCATGTAT-CTAAAT
320 TCAAAAACGGTGGAAAGAAAAGCTTTTATTGCGACACCAAAGCATCAATGTCATGTATCCT-AAT
*** * * * *
894119 CTTGGGTATGTGTTCTTCGTTCCCAATCTTGAAAAAAATGGAGACTATT-TCAAGAATCGATGCT
384 GAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTAT-GAGAATCGATGCT
* * * *
894183 AGTCATATTT-AGAAGATGAATTTTGATCTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATACA
448 TGTCATATTTAAG-GGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCA
* * * * * * *
894247 AAACAAAACCATTAATATCATTTATCCTAATGAGAAGAATTTATTTATAGTACCTAATCACAAAA
512 AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAA
* * * * *
894312 TGAGTAAAGATCAATACTAGAATCCATGTTTGTCTCATTTCAGGCACGAACTTACACTTTACAAA
577 TGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAA
** * * ** *
894377 AATTGGTTTGAAGAAAGCCTTTCTTGCAAAACCAAAG-AGTCAATATCGTCAATCCTAAAGAGAA
642 AATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCA-TCAATATCATGTATCCTAATGAGAA
* * * * * ** *
894441 GACTATGTTTA-CGTGCCTAATCTTGAAAAGAATGGGGATTACTATAACTATTTGTGTTTGCCTT
706 GACTATGTTCATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTT
* * * * *
894505 ATTTAAGTGACAAACTTTGACTCTAT-AAAAATCGGTGGAAAGAAAAACTTTTCTTGTGACCCCA
771 ATTTAAGAGACAAACTTTGATTCTATCAAAAA-CGGTGGAAAGAAAAGCTTTTCTTGCGACACCA
* * * * ** *
894569 TAGCATTAATGTCATGTATCCTAATGAAGAGAAGGTGTTCTTGGTAGCCAATCTTGAAAGGAATG
835 AAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATG
* * * * *
894634 GAGACTGTTACGAGAATCGATGCCT-ACCTTTTTTAAGGGATGAAATTTGA
900 GAGACTGTTATGAGAATCGATGCTTGTCC-TATTTAAGGGATGAATTTTGA
* * *** *
894684 TTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTTGTATCATTTAT-C
1 TTTTAAGGAAAATAGAGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTTTCC
* * * * *
894748 T-ATAGAGGAGAATGTGTTTACTA-TGTCGAATCACAAAATGAGTGAAGATCGTTACTAGAATCC
66 TAAT-GAGGAGAATTTGTTTA--AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* * * * ***
894811 ATGATTGTCTCATTTATGGCACGAACTTAGGCTTTACAAAAATTAGCAAGAAGAAAGCCTTTCTT
128 ATGTTTGTCTCATTT-GGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTT
** * *
894876 GCCAATCCAAAGCATCAATATCGTGCATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTG
192 GTGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTG
* * * *
894941 AAAAGAATGGGATT-GTGTGACTATTCATGTTTGTATTATTTAAAAGGCAAACTTTGATTCTATC
257 AAAAGAATGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
* * * * * *
895005 AAAAACGATGGAAAGAAAAGCTGTTCA-TGCAACCCCAAAGCATCAATGTCATGTATCCAAATTA
322 AAAAACGGTGGAAAGAAAAGCT-TTTATTGCGACACCAAAGCATCAATGTCATGTATCCTAATGA
* * * * *
895069 TGGGAATGTGTTCTTAGTTCCTAGTCCTGAAAAGAATGGAGACTATT
386 AGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTATT
895116 GCGCGCACTG
Statistics
Matches: 7554, Mismatches: 1272, Indels: 324
0.83 0.14 0.04
Matches are distributed among these distances:
942 14 0.00
943 371 0.05
944 222 0.03
945 172 0.02
946 4 0.00
947 193 0.03
948 437 0.06
949 522 0.07
950 674 0.09
951 2154 0.29
952 1343 0.18
953 613 0.08
954 539 0.07
955 292 0.04
956 4 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (949 bp):
TTTTAAGGAAAATAGAGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTTTCC
TAATGAGGAGAATTTGTTTAAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
TTTGTCTCATTTGGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGA
AACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA
GAATGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAA
ACGGTGGAAAGAAAAGCTTTTATTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGA
ATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCATAT
TTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAAT
CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
GAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTC
ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGA
CAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG
TCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTAT
GAGAATCGATGCTTGTCCTATTTAAGGGATGAATTTTGA
Found at i:898414 original size:475 final size:475
Alignment explanation
Indices: 895139--903019 Score: 8266
Period size: 475 Copynumber: 16.6 Consensus size: 475
895129 CTTGTCATTT
* * * * * * *
895139 AATGAATTAAAATCATTTCTAGACTCTATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCA
1 AATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
* * ** * * ** * *
895204 ATAATTGGTTGAAAGTAAA-CCTTTCTTGCGACGCCAAAACATCTATATAATGTTTCCTTATGAG
66 AAAATTGGTTGGAAG-AAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTATCCTTATGAG
* * * * * *
895268 AAGACAATGTTTATGGTGCCAAATCCTAAAAAGAATAGGGATTAGTATGACTCTTCATGTTTCTC
130 AAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTC
* * * *
895333 TTATTTAAGAGACAAAACTTTAATTCTATGAAAAACGGTGGAAAGAAAAGCTTTTC-TGACGAGA
195 TTATTTAAGAGAC-AAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTG-CGA-C
* * * * * ** *
895397 CCAAAGCATCAATGCCATGTATCTAAATGTTGGGTACGTGTTCTTCATTCCCAATCTTGAAAAGA
257 CCAAAGCATCAATGTCATGTATCCAAATGATGGGAATGTGTTCTTGGTTTCCAATCTTGAAAAGA
* * * * **
895462 ATAGAGACTATTCCGAGAATCGATGCTAGTCATATTTAAAAGATGAATTTTGATTTTAAGGAAAA
322 ATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAA
* * * *
895527 TA-GGCAAAGAAATGATTTTCATACAAAAGAAAACCATCAATATCATTTATCTTAA-GTAGGAGA
387 TAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATG-AGGAGA
* *
895590 ATGTGTTTGTAGTACCTAATCACAA
451 ATGTGTTTATAGTGCCTAATCACAA
* * * * * * *
895615 AATGAGTAAAGATCAATACTAGAATTCATGTTTGTCTCATTTCAGGCATGAACTTACACTTTACA
1 AATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
* * * * *
895680 AAAATTGGATT-GAAGAAAGCCTTTCTTGCAAAACCAAAGCGTCAATATCGTCAATCCTAAAGAG
66 AAAATTGG-TTGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTATCCTTATGAG
** * * ** * * *
895744 AAGACTATGTTTATCATGTCTAATCTTGAAAAGAATGGGGATTACAATGACTTTTCGTGTTTGCC
130 AAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTC
** * * * *
895809 TTATTTAATTGACAAACTTTGACTCTAT-AAAAATTGGTGGAAAGAAAACCTTTTCTTGTGACCT
195 TTATTTAAGAGACAAACTTTGATTCTATCAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCGACCC
* *** * *
895873 AATAGCATCAATGTCATGTATCCCAATGAAAAGAAGGTGTTCTT-GTTTGCCAATCTTGAAAGGA
259 AA-AGCATCAATGTCATGTATCCAAATGATGGGAATGTGTTCTTGGTTT-CCAATCTTGAAAAGA
* * * * * *
895937 ATGGAGACTATTACAAGAATCGATGCCTGTCTTTTTTAAGGGATGAAATTTGATTTTAAGGAAAA
322 ATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAA
* * *** * *
896002 TAGTGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTTGTATCATTTATCCTTATCAGGAGAA
387 TAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
*
896067 TGTGTTTATAGTG-CTAAATCACAT
452 TGTGTTTATAGTGCCT-AATCACAA
* * * *
896091 AATGAATGAAGATCGTTACTAGAATCCATGTTTGCCTCAATTGAGGCACGAACTTAGGCTTTACA
1 AATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
* * * * * * * *
896156 AAAATTAGTGGGACA-AAAGCCTTTCATACGAAACCAAAG-GTCAACATCATGTATCCTTATGAG
66 AAAATTGGTTGGA-AGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTATCCTTATGAG
* * * * * * * *
896219 AAGACCATGTTTAGGGTGCCTAATCCTGAAAACAAT-GGTATTAGTGTGACTATTGATATTTGTA
130 AAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTC
* * * *
896283 TTAATTAAAAGGCAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTGTTCTTGCGACCCC
195 TTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGA-CCC
* ** * * *
896348 AAAGCATCAATGTCAAGTATCCAAATGATGGGAATGT-TTCTTACTTCCCAGTCTTGAACAGAAT
259 AAAGCATCAATGTCATGTATCCAAATGATGGGAATGTGTTCTTGGTTTCCAATCTTGAAAAGAAT
* * *
896412 GGAGACTGTTAGGAGCAA-CGATGCTTGTCAT-TTCTAAGGGATGAACTTTGATTTTAAGCAAAA
324 GGAGACTGTTACGAG-AATCGATGCTTGTCATATT-TAAGGGATGAATTTTGATTTTAAGGAAAA
* * * * * * *
896475 TAGGGCAAAAAAAAGATTTCCACGCAAAA-AAAATCATTAGTATCACTTATCCTAATGAGCAGAA
387 TAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
*
896539 TGTTTTTATAGTGCCTAATCACAA
452 TGTGTTTATAGTGCCTAATCACAA
* * *
896563 AATGAATGAAAATCATTACTAGAATCCATGTTTGTCTCATTTGAGCCACGAACATAGACTTTACA
1 AATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
*** * * *
896628 AAAATTGGTAAAAAGAAAGCCTTTCATGTGAAACCAAAGCATCAATATCGTCTATCCTAATGAGA
66 AAAATTGGTTGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTATCCTTATGAGA
* * * ** *
896693 AGACTATATTTATGGTGCCTAATTCTGAATAA-AATGTGGATTAGTATGACTATTTGTGTTTGAC
131 AGACTATGTTTATGGTGCCTAATCCTGAA-AAGAATGGGGATTAGTATGACTATTCATGTTTGTC
* *** * * *
896757 TTATTTAAGAGACAAACTTTGACTCTATCAAAGGCGGTGGAAAGAAATGCTATTCTTGCAACACC
195 TTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAC-CC
* * ** * *
896822 AAAGCATCAATGTCATGTATCTAAATTATGGGAATGCATTCTTGGTTCCCAATCTTAAAAAGAAT
259 AAAGCATCAATGTCATGTATCCAAATGATGGGAATGTGTTCTTGGTTTCCAATCTTGAAAAGAAT
* * * * *
896887 AGG-GATTGTTTCGAGAATCGACT-CTTGTCATATTTAAGAGATGAATTCTGATTTTATGGAAAA
324 -GGAGACTGTTACGAGAATCGA-TGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAA
* * **
896950 TAGAGG-AAAGAAAAGATTTTCATGCAAAAGAAAACCATCGATATCATTTATCCTAACAAGGAGA
387 TAG-GGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
897014 ATGTGTTTATAGTGCCTAATCACAA
451 ATGTGTTTATAGTGCCTAATCACAA
* * * * *
897039 AATGAATGAAGATCATTACTAGACTCCATGTTTATCTCATTTGAGGCACGAATTTAGGCTTTGCA
1 AATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
* * * * * *
897104 ATAATTGGTTGAAAGTAAGCCTTTCTTGC-AATGCCAAAACATCAATATAACG--TATCCATATG
66 AAAATTGGTTGGAAGAAAGCCTTTCTTGCGAA-ACCAAAGCATCAATAT--CGTCTATCCTTATG
** * * *
897166 AGAAGACTACATTTATGGAGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTC
128 AGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTG
* * * * * *
897231 TCTTTTTTAAGAGACCAAACTGTGATTCTATTAAAAATAGTGGCATGAAAAGCTTTTCTTGCGAC
193 TCTTATTTAAGAGA-CAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAC
* * * * * *
897296 ACCAAAGCATCAATGTCATGTATCTAAATGTTGGGAATGTGTTCTTGGTTCCCAATATAGAAAAT
257 -CCAAAGCATCAATGTCATGTATCCAAATGATGGGAATGTGTTCTTGGTTTCCAATCTTGAAAAG
* * * * * *
897361 AATGGA-AGCTGTTATGAGAATCAAAGCTCT-CCATATTTAAGGGAAGAATTTTGATTTCAAGGA
321 AATGGAGA-CTGTTACGAGAATCGATGCT-TGTCATATTTAAGGGATGAATTTTGATTTTAAGGA
* * * * * **
897424 AGATAGGGCAAACAAAAGATTTCCATGCAAAAGAAAAACATGAATATTGTTTATCCTAATGAGGA
384 AAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGA
*
897489 GCATGTGTTTATAGTGCCTAATCACAA
449 GAATGTGTTTATAGTGCCTAATCACAA
* * * ** *
897516 AATGAATGAACATCATTACTAGAATCTATGCTTGTCTCATTTGAGGCACGAGTTTAGACTTTGCA
1 AATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
* * * * * ** ** * ** * *
897581 ATAATTGGTTGAAAGTAA-CTTTTTCCTATGATGCCAAAGCATCAACATAATGTATTCTTATGAG
66 AAAATTGGTTGGAAGAAAGC-CTTTCTTGCGAAACCAAAGCATCAATATCGTCTATCCTTATGAG
* * *
897645 AAGACT-TGTTTATGGTGCCTAACCCTGAAAAGATTGGGGATTAGTATGACTATTCATGTTTCTC
130 AAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTC
*
897709 TTATTTAAGAGATAAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGTC-ACA
195 TTATTTAAGAGA-CAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTG-CGAC-
* * * ** *
897773 CAAAAGCATCAATGTCATGTATCTAAATGTTACGTATGTGTTCTTGG-TTCTCAATCTTGAAAAG
257 CCAAAGCATCAATGTCATGTATCCAAATGATGGGAATGTGTTCTTGGTTTC-CAATCTTGAAAAG
* * * * ** * *
897837 AATGGAGACTATTCCAAGAATCGATGCTTGCCATATTTAAGAAATGAATTTTTATTTTAAGTAAA
321 AATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAA
* * * * *
897902 ATAAGGCAAAGAAAAGATTTTCAAGCAAAAGAAAACCATCAATATTATTTATCCTAATGAGGAGG
386 ATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* *
897967 ATTTGTTTATAGTACCTAATCACAA
451 ATGTGTTTATAGTGCCTAATCACAA
* * * * * * *
897992 AATCAATAAAGATCGTTACTAGAATCCATGTTTATCTCATTTGAGGTACGAACTTACATTTTACA
1 AATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
* * ** * *
898057 AAAATTAGTTGGAAGAAAGCCTTTCTTGTGAAATGAAAACATCAATATCTTCTATCC-TACTGAG
66 AAAATTGGTTGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTATCCTTA-TGAG
* * * * * *
898121 AAGACTATGTTTATAGTGCCTAAGT-TTGAGAACAATGGTGATTAGTATGACTATTCGTGTTTGT
130 AAGACTATGTTTATGGTGCCTAA-TCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGT
* * * * *
898185 CCTATTTAAGAGACAAACTTTGATTCTAT-AAAAATAGTGGAAAAAAAACCTTTTCTTGCAACCC
194 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACCC
* ** * * * * *
898249 TATAGCATCAATGTCATGTATCTTAATGAAGGGAAGGTGTTCTTGGATGCCAATCATGAAAAGAA
259 -AAAGCATCAATGTCATGTATCCAAATGATGGGAATGTGTTCTTGGTTTCCAATCTTGAAAAGAA
* * * * * * *
898314 TGGAGACTGTTATGAGAATCGATGCTTGCCTTTTTTAGGGGATGAAATTTGATTTTATGGAAAAT
323 TGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAAT
* * * *
898379 AGGACAAAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCACTTATCCTAATGAGGAGAAT
388 AGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
*
898444 GTGTTTATAGTACCTAATCACAA
453 GTGTTTATAGTGCCTAATCACAA
* * * * * *
898467 AATGAATAAAGATCAATACTAGAATCCATGTTTGTCTCATTTCAGGCATGAAGTTACACTTTACA
1 AATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
* * * * *
898532 AAAATTGGTTTGAAGAAAGCCTTTCTTGCAAAACTAAAGCATCAATATCATCAATCC-TATTGAG
66 AAAATTGGTTGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTATCCTTA-TGAG
* * * ** *
898596 AACACTATGTTTATGGTGCCTAATCTTGAAAAGAAT-GAGATTAGTATGACTATTTTTGTTTGCC
130 AAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTC
* * * *
898660 TTATTTAAGTA-ACAAACTTTGACTCTAT-AAAAATCGGTGGAAAGAAAACCGTTTCTTGTGACC
195 TTATTTAAG-AGACAAACTTTGATTCTATCAAAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGA-C
** * * * * *
898723 CCGTAGCATCAATGTCATGTATCCTAGTGGA-GGGAAGGTGTTCCTGGTTTCCAATCTTGACAAG
257 CCAAAGCATCAATGTCATGTATCCAAAT-GATGGGAATGTGTTCTTGGTTTCCAATCTTGAAAAG
* * * * * * *
898787 AATGGAGATTGTTACGAGAATCAATGTTTGTCTTTTTTAGGGGATGAAATTTGATTTTAAGGAAA
321 AATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAA
* * * *
898852 ATAGGGCAAAGAAAAAATTTTCATGCAAAAGAAAATCGTTAGTATCATTTATCCTAATGAGGAGA
386 ATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* * * *
898917 TTGCGTTTACAATGCCTAATCACAA
451 ATGTGTTTATAGTGCCTAATCACAA
* * * * *
898942 AATGAATGAAGATCGTT-CTAGAATCCATGTTAGTCTCTTTTGAGACACGAACTTAGGCTTTACA
1 AATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
* *** * *
899006 AAAATTAGCAAGAAGAAAGCCTTTCTTGCGAAACCAAAGCGTCAATATCGTGTATCCTTATGAGA
66 AAAATTGGTTGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTATCCTTATGAGA
* * * *
899071 AGACCATGTTTATGGTGCCTAATCCT-AAATAAAATGTGGATTAGCATGACTATTCATGTTTGAT
131 AGACTATGTTTATGGTGCCTAATCCTGAAA-AGAATGGGGATTAGTATGACTATTCATGTTTG-T
* * * * * ** * * *
899135 -GTATATAAGAGATAAATTTTGACTT-TATCAAGAACAGTGGATAG-AAAGCCTCTTATTGCGAC
194 CTTATTTAAGAGACAAACTTTGA-TTCTATCAAAAATGGTGGAAAGAAAAG-CTTTTCTTGCGAC
* * ** * * * *
899197 ACCACAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTCTTAG-TTCATAATTTTGAAAG
257 -CCAAAGCATCAATGTCATGTATCCAAATGATGGGAATGTGTTCTTGGTTTC-CAATCTTGAAAA
* *
899261 GAATGGAGACGGTTACGAGAATAGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAA
320 GAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAA
* * *
899326 AATAGGACAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATGATTTATCC--------A-
385 AATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG
899382 AA------TA-A--G-----------
450 AATGTGTTTATAGTGCCTAATCACAA
* * *
899388 -AGGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTATACTTTATA
1 AATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
* * * *
899452 AAAATTGGTGGGAAGAAAGCTTTTCTTGTGAAACCAAAGCATCAATATCGTGTATCCTTATGAGA
66 AAAATTGGTTGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTATCCTTATGAGA
* * *
899517 AGACTATGTTTATGGTGCCTAAT-CTCATAAAGAATGGGGATTAGTAAGACTATTCATTTTTGTC
131 AGACTATGTTTATGGTGCCTAATCCTGA-AAAGAATGGGGATTAGTATGACTATTCATGTTTGTC
* *
899581 TTATTT-AGTAGATAAACTTTGATTCTAT-AAAAATGGTAGAAAGAAAAGCTTTTCTTGCGACAC
195 TTATTTAAG-AGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAC-C
* * * * * * *
899644 CAACGCATCAATGTCACGTATCCAAATGATGGGAACGTGTTCTTAGTTCCCAATCTAGAAAATAA
258 CAAAGCATCAATGTCATGTATCCAAATGATGGGAATGTGTTCTTGGTTTCCAATCTTGAAAAGAA
* * * * * * * *
899709 TGGTGGCTATTACAAGAATCGAAGCTTGTCATATTTAAGGGCTGAATTTTGATTTCAAGGAAGAT
323 TGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAAT
* * *
899774 AGGGCAAACAAAAGATTTTCATGCAAAAGAAAATCATGAATATCATTTATCCTAAAGAGGAGAAT
388 AGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
*
899839 GTGTTTATAGTGCGTAATCACAA
453 GTGTTTATAGTGCCTAATCACAA
* * * * *
899862 AATGAATGAAGATCAATACTAGGATCCATGTTTGTCTCATTTGAGGCACGAACTTGGGCTTTAAA
1 AATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
* * * * * *
899927 AAAATTAG-CGAGAAAAAAGCCTTTCTTGCGAAACCAAATCGTCAATATCGTGCT-TCCTTATAA
66 AAAATTGGTTG-GAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGT-CTATCCTTATGA
* * * *
899990 GAAGACTATGCTTATGGTGCCTAATCCTAAAAAGAAT-GGGATTAGTGTGACCATTCATGTTTGT
129 GAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGT
* * * * * *
900054 ATTATTTAAGAGATAAACTTTGATTTTATCAAAAATGGTAGAAAGAAAAGCTGTTCTTGCAACCC
194 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGA-CC
* * * *
900119 CAAAACATTAATGTCATGTATCCAAATGATGGG-ATCGTGTTCTTAG-TTCCTAGTCTTGAAAAG
258 CAAAGCATCAATGTCATGTATCCAAATGATGGGAAT-GTGTTCTTGGTTTCC-AATCTTGAAAAG
* *
900182 AATGGAGACTGTTACGAGCAAT-GATGCTTGTCATTTTTAAGGGATGAACTTTGATTTTAAGGAA
321 AATGGAGACTGTTACGAG-AATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAA
* * * * *
900246 AATAGGGCAAAGAAAATATTTCCATGCAAAA-AAAATAATCAATATCACTTGTCCTAATGAGGAG
385 AATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG
900310 AATGTGTTTATAGTGCCTAATCACAA
450 AATGTGTTTATAGTGCCTAATCACAA
* *
900336 AATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAGGCATGAACTTAGACTTTACA
1 AATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
* * * *
900401 AAAATTGGTGGGAAGAAAGCCTTTCATGTGAAACCAAAGCATCAATATCGTCTATCCTAATGAGA
66 AAAATTGGTTGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTATCCTTATGAGA
* * * * *
900466 AGACTATGTTTGTGGTGCCTAATCCT-AAAGAAAATGTGGATTAGTATGACTATTTATGTTTGAC
131 AGACTATGTTTATGGTGCCTAATCCTGAAA-AGAATGGGGATTAGTATGACTATTCATGTTTGTC
* * * * *
900530 TTACTAAAGAGACAAACTTTGACTCTATC-AAAACGGTGGAAAGCAAAGCTTTTCTTGCGACACC
195 TTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAC-CC
* * ** *
900594 AAAGCATCAATGTCATGTATCTAAATTATGGGAATACGTTCTTGGTTCCCAATCTTGAAAAGAAT
259 AAAGCATCAATGTCATGTATCCAAATGATGGGAATGTGTTCTTGGTTTCCAATCTTGAAAAGAAT
* * * * * * * * *
900659 AGACATTGTTCCAAGAATTGACGCTTGTCATATTTAAGAGATGAAATTTGATTTTAAGGAAAATA
324 GGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAAT-
* * * *
900724 AGGG-AAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATAGCACTTATCCTAACGAGGAGAAT
388 AGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* *
900788 GTGTTTATAGTCCCTAGTCACAA
453 GTGTTTATAGTGCCTAATCACAA
* * * * * * *
900811 AATGAATGAATATCATTTCTAGACTCCATGTTTGTCTCATTTGAGGCATGAATTTAGGCTTTGCA
1 AATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
* * * * ** ** *
900876 ATAATTGGTCGAAAGTAAGCCTTTCTTGCGATGCCAAA-CATCAATATAATTTATCCTTATGAGA
66 AAAATTGGTTGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTATCCTTATGAGA
* * * *
900940 AGACTATGTTTATGGTACCTAATCTTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTCTCT
131 AGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCT
*
901005 TATTTAAGAGACAAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCATTTCTTGCGACACC
196 TATTTAAGAGAC-AAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAC-CC
* * * * * *
901070 AAAGCATCAATGTCATGTATCTAAATGTTGGGTATGTGTTCTTCGTTTCTAATC-TCAAAAGGAA
259 AAAGCATCAATGTCATGTATCCAAATGATGGGAATGTGTTCTTGGTTTCCAATCTTGAAAA-GAA
* * * * **
901134 TGGATACTATTTCGAGAATCGATGCTTATCATATTTAAAAGATGAATTTTGATTTTAAGGAAAAT
323 TGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAAT
* * *
901199 AGGGCAAA-AAGGAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGATAA
388 AGGGCAAAGAA-AAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
* *
901263 TGTGTTTATTGTACCTAATCACAA
452 TGTGTTTATAGTGCCTAATCACAA
* * * * ** * * *
901287 AATGAATAAAGATCAATACTAGAATCCATGTTTTTCTTATTCCACGCATGAACTTACACTTTACA
1 AATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
* * * * **
901352 AAAAATGGTTTGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGT-TAATCCTAAAAAG
66 AAAATTGGTTGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTCT-ATCCTTATGAG
* * * * *
901416 AAGACTATGTTTATCGTGCCTAATCCTGAAAACAATGGGGATTACTATGACTATTCGTGTTTGCC
130 AAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTC
* * * * * *
901481 TAATTTAAGTGACAAACTTTGACTCTAT-AAAAATCAGTGGAAA-AAAACCTTTTCTTGTGACCT
195 TTATTTAAGAGACAAACTTTGATTCTATCAAAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGACC-
* * * * * * * * * *
901544 CATAGCATTAATATCATGTATCCTAATGAAGGGAAGGTGTTCATAGTTGCCAATCTTGAAAGGAA
258 CAAAGCATCAATGTCATGTATCCAAATGATGGGAATGTGTTCTTGGTTTCCAATCTTGAAAAGAA
* * * * * *
901609 TGGAGACTATTATGAGAATCGATG-TCTGTCTTTTTTAAGGGATAAAATTTGATTTTAAGGAAAA
323 TGGAGACTGTTACGAGAATCGATGCT-TGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAA
* * * *
901673 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAGTATCATTTATCCTAAAGAGGAGAA
387 TAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
*
901738 TGTGTTTACAGTG-CTAAATCACAA
452 TGTGTTTATAGTGCCT-AATCACAA
* * * *
901762 AATGAATGAAGATCGTTACTAGAATCCATGTTTGTCTCAATTGAGGCACGAACCTAGGCTTTACA
1 AATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
* ** * *
901827 AAAATTAGCGGGAAGAAAGCCTTTCTTGCGAAACCAAAG-GTCAATATCGTGTATCCTTATGAGA
66 AAAATTGGTTGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTATCCTTATGAGA
* **
901891 AGACTATGTTTATGGTGCCTAACCCTGAAAAGAATGGGGATTAGTACAACTATTCATGTTTGTCT
131 AGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCT
* * * *
901956 TGTTTAGGAGACAAACTTTGGTTCTATAAAAAATTGGTGGAAAGAAAAGCTTTTCTTGCGAGCCC
196 TATTTAAGAGACAAACTTTGATTCTATCAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCGA-CCC
* * *
902021 AAAGCATCAATGTCATGTATCCAAATGATGGGATTGTGTTCTTAG-TTCCTAGTCTTGAAAAGAA
259 AAAGCATCAATGTCATGTATCCAAATGATGGGAATGTGTTCTTGGTTTCC-AATCTTGAAAAGAA
* * * *
902085 TGGAGATTGTTACGAGCAAT-GATGCTTGTCATTTTTAAGGGATGAACTTTGATTTTAAGCAAAA
323 TGGAGACTGTTACGAG-AATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAA
* * * * * *
902149 TAGGGCAAAGAAAAGATTTCCACGCAAAAAAAAAATCATCAGTATCACTTT-TCCTAATAAGCAG
387 TAGGGCAAAGAAAAGATTTTCATGC-AAAAGAAAATCATCAATATCA-TTTATCCTAATGAGGAG
* *
902213 AATGTGTTTATACTGCCTAATCA-AGG
450 AATGTGTTTATAGTGCCTAATCACA-A
* *
902239 AA-GAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTCACA
1 AATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
* * ** *
902303 AAAATTGGTAGGAAGAAAGCCTTTCATGCGAAACCAAAGCATCAATATCGTCTATCCAAATAAGA
66 AAAATTGGTTGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTATCCTTATGAGA
* * * * *
902368 AGACTATGTTTACGGTGCCTAATTCTGAATAA-AATGTGGATTAGTATGACTATTTAT-TTTAGA
131 AGACTATGTTTATGGTGCCTAATCCTGAA-AAGAATGGGGATTAGTATGACTATTCATGTTT-GT
* * * * * * * * *
902431 CTTATTTAAGATACAAACTTTGACTCCATCAAAAACGATGAAAAGAAGAGCGTTTCTTGGGACAC
194 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAC-C
* * * * * *
902496 AAAAGTATCAATGCCATGTATCTAAATTATGGGAATGCAG-TCTTGG-TTCCTAATCTTGAAAAG
258 CAAAGCATCAATGTCATGTATCCAAATGATGGGAATG-TGTTCTTGGTTTCC-AATCTTGAAAAG
* * * * * * *
902559 AATAGAGATTGTTTCGAGAATCGATGCTTGTCATATCTGAGAGATGAATTTTGATTTTAAGAAAA
321 AATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAA
* * * * * * * *
902624 ATAAGGCAAAGAAAATATTTTCATGCAAAAGAAAACCATCGATACCTTTTATCCCAATAAGGAGA
386 ATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* *
902689 ATATGTTTATAGTACCTAATCACAA
451 ATGTGTTTATAGTGCCTAATCACAA
* * * * * ** *
902714 AATGAATGAAAATCATTACTAGAGTCCATGTTTGCCTCATTTGAGGCACAAATTTATTCTTTGCA
1 AATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
* * ** * * ** *
902779 ATAATTGGTTGAAAGAAAGCCTTTCTTGCGATGCCAAAACACCAATATATTGTATCCTTATGAGA
66 AAAATTGGTTGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTATCCTTATGAGA
* * * *
902844 TGCCTATGTTTATGGTGCCTAATCCTGAAAAAAATGGGGATTAGTATGACTATTCATGTTTTTCT
131 AGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCT
* * ** * *
902909 TATTTAAAAGATAAAACTTTGATGATATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACATC
196 TATTTAAGAGA-CAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAC-CC
* *
902974 AAAGCATCAATGTCATGTAT-CAAATGATGGGTATATGTTCTTGGTT
259 AAAGCATCAATGTCATGTATCCAAATGATGGGAATGTGTTCTTGGTT
903020 CTTGAAAGCT
Statistics
Matches: 6160, Mismatches: 1078, Indels: 333
0.81 0.14 0.04
Matches are distributed among these distances:
445 195 0.03
446 174 0.03
447 2 0.00
453 1 0.00
454 2 0.00
457 1 0.00
459 1 0.00
460 4 0.00
461 1 0.00
463 1 0.00
466 1 0.00
467 1 0.00
471 1 0.00
472 140 0.02
473 158 0.03
474 982 0.16
475 1946 0.32
476 1845 0.30
477 693 0.11
478 11 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (475 bp):
AATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
AAAATTGGTTGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTATCCTTATGAGA
AGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCT
TATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACCCAA
AGCATCAATGTCATGTATCCAAATGATGGGAATGTGTTCTTGGTTTCCAATCTTGAAAAGAATGG
AGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGG
GCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG
TTTATAGTGCCTAATCACAA
Found at i:903813 original size:70 final size:70
Alignment explanation
Indices: 903700--903874 Score: 316
Period size: 70 Copynumber: 2.5 Consensus size: 70
903690 TTCCCGTGTG
903700 AATGTATCGATACAATTTTTGATTATCGATACATATTTGAAAATATAGCCGTTTCTAGCCGTTAC
1 AATGTATCGATACAATTTTTGATTATCGATACATATTTGAAAATATAGCCGTTTCTAGCCGTTAC
903765 AAGCC
66 AAGCC
*
903770 AATGTATCGACACAATTTTTGATTATCGATACATATTTGAAAATATAGCCGTTTCTAGCCGTTAC
1 AATGTATCGATACAATTTTTGATTATCGATACATATTTGAAAATATAGCCGTTTCTAGCCGTTAC
903835 AAGCC
66 AAGCC
903840 AATGTATCGATACAACTTTTTG-TGTATCGATACAT
1 AATGTATCGATACAA-TTTTTGAT-TATCGATACAT
903875 TGTATCGATA
Statistics
Matches: 101, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
70 84 0.83
71 17 0.17
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (70 bp):
AATGTATCGATACAATTTTTGATTATCGATACATATTTGAAAATATAGCCGTTTCTAGCCGTTAC
AAGCC
Found at i:903880 original size:13 final size:13
Alignment explanation
Indices: 903862--903887 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
903852 CAACTTTTTG
903862 TGTATCGATACAT
1 TGTATCGATACAT
903875 TGTATCGATACAT
1 TGTATCGATACAT
903888 ACTTTGGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:903884 original size:33 final size:33
Alignment explanation
Indices: 903842--903906 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
903832 TACAAGCCAA
*
903842 TGTATCGATACA-ACTTTTTGTGTATCGATACAT
1 TGTATCGATACATAC-TTTGGTGTATCGATACAT
903875 TGTATCGATACATACTTTGGTGTATCGATACA
1 TGTATCGATACATACTTTGGTGTATCGATACA
903907 AGTTTGGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 28 0.93
34 2 0.07
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATACTTTGGTGTATCGATACAT
Found at i:904011 original size:20 final size:20
Alignment explanation
Indices: 903959--904013 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
903949 CATATTTTTG
*
903959 ATGTATCGATACATTGCAAC
1 ATGTATCGATACTTTGCAAC
903979 ATGTATCGATACTTTG-AAC
1 ATGTATCGATACTTTGCAAC
*
903998 TGTGTATCGATACTTT
1 -ATGTATCGATACTTT
904014 TAAGGGTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
19 3 0.09
20 29 0.91
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.38
Consensus pattern (20 bp):
ATGTATCGATACTTTGCAAC
Found at i:906485 original size:13 final size:13
Alignment explanation
Indices: 906467--906505 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
906457 ATAATCCCCC
*
906467 TGTATCGATACAG
1 TGTATCGATACAA
906480 TGTATCGATACAA
1 TGTATCGATACAA
906493 TGTATCGATACAA
1 TGTATCGATACAA
906506 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:912709 original size:19 final size:19
Alignment explanation
Indices: 912652--912710 Score: 82
Period size: 20 Copynumber: 3.0 Consensus size: 19
912642 TACAAGCCAA
*
912652 TGTATCGATACAACTTTTTG
1 TGTATCGATACAAC-TTTGG
912672 TGTATCGATACATACTTTGG
1 TGTATCGATACA-ACTTTGG
*
912692 TGTATCGATACAAGTTTGG
1 TGTATCGATACAACTTTGG
912711 CTACTGCCAA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
19 6 0.17
20 28 0.78
21 2 0.06
ACGTcount: A:0.25, C:0.14, G:0.20, T:0.41
Consensus pattern (19 bp):
TGTATCGATACAACTTTGG
Found at i:914740 original size:477 final size:476
Alignment explanation
Indices: 913079--915397 Score: 3229
Period size: 476 Copynumber: 4.9 Consensus size: 476
913069 GATCCTAATA
* * * *
913079 GTTCCTAATCTTGAAAAGAATGGGGACTGTTTCGAGAGTTGATGCTTGTCATATTTAAGAGATGA
1 GTTCCCAATCTTGAAAAGAATGGAGACTGTTTCGAGAATCGATGCTTGTCATATTTAAGAGATGA
*
913144 ATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG-TTTTCCAAGCAAAA-AAGAACCATCAATAT
66 ATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTT-CATGCAAAAGAA-AACCATCAATAT
* *
913207 CA-TT-T-----TGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAAT
129 CATTTATCCCAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAAATCATTACT
* *
913265 AGAATCCATGTTTGTCTCGTTTGAGGCACGAATTTAGAT-TTTACAATAATTGGTTGAAAGAAAG
194 AGAATCCATGTTTGTCTCATTTGAGGCACGAATTTAG-TCTTTGCAATAATTGGTTGAAAGAAAG
* * * * *
913329 CCTTTCTTGCAATGCCAAAACATCAACATATTGTATCCTTATGAGAAAACTATGTTTATGGTACC
258 CCTTTCTTGCGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCC
* * * *
913394 TAATCATGAAAAGAATGGGGATTATTATGACTATTCATGGTTCTCTTATTTAAGAGACAAACTTT
323 TAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTCTTTTATTTAAGAGACAAACTTT
* * * * *
913459 GATTATTTCAAAAACGGTGGAAAGATAAGCTTTTCTTGCGACACCAAAGCGTAAATGTCAGGTAT
388 GATTATATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
*
913524 CTAAAT-ATTGGGTATGTGTTCTTC
453 CTAAATGA-TGGGTATGTGTTCTTG
*
913548 GTTCCCAATCTTGAAAAGAATGGAGACTG-TTCTGAGAAACGATGCTTGTCATATTTAAGAGATG
1 GTTCCCAATCTTGAAAAGAATGGAGACTGTTTC-GAGAATCGATGCTTGTCATATTTAAGAGATG
* * * *
913612 AATTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTTAATGCAGAAGAAAACCATCAATATC
65 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATC
* * *
913677 TTTTATCCCAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAAATGATTACTA
130 ATTTATCCCAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAAATCATTACTA
* * * * * *
913742 GAGTCCATGTTTGCCTCATTTGAGGCGCAAATTTATTCTTTGCAATAATTGGTTCAAAGAAAGCC
195 GAATCCATGTTTGTCTCATTTGAGGCACGAATTTAGTCTTTGCAATAATTGGTTGAAAGAAAGCC
* * * *
913807 TTTCTTGTGATGCCTAAACACCAATATATTGTATCCTTATAAGATGACTATGTTTATGGTGCCTA
260 TTTCTTGCGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTA
* * * * * *
913872 TTCTTGAAAAGAATGGGGATTAGTATAACTATTCACGTTT-TTCTTATTTAAAAGATGAAACTTT
325 ATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTCTT-TTATTTAAGAGA-CAAACTTT
* * * *
913936 GATTATATCAAAAATGGTGGAAAAAAAAGCTTTTCTTGCGACACCAAAGCATTAATGTTATGTAT
388 GATTATATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
*
914001 C-GAATGATGGGTATGTGTTCTTG
453 CTAAATGATGGGTATGTGTTCTTG
* * * * *
914024 GTACCTAATCTTGAAAAGAATGGAGACTGTTTCGGGAATCGGTGCTTGTCATATTTAAGGGATGA
1 GTTCCCAATCTTGAAAAGAATGGAGACTGTTTCGAGAATCGATGCTTGTCATATTTAAGAGATGA
* * *
914089 ATTTTGAATTTAAGGAAAATAGGGCAAACAAAAGATTTT-AGTGCAAAAGAAAACCATTAATATC
66 ATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCA-TGCAAAAGAAAACCATCAATATC
* * * *
914153 ATTTATCCTAATGAGGAGAATGTGTTCATAGTGCCTAATCAAAAAATGAATGAAAGTCATTACTA
130 ATTTATCCCAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAAATCATTACTA
* * * *
914218 GAATCCATGTTGGTCTCACTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGTC
195 GAATCCATGTTTGTCTCATTTGAGGCACGAATTTAGTCTTTGCAATAATTGGTTGAAAGAAAGCC
* **
914283 TTTCTTGCGATGCCAAAACACCAATATGTTGTGGCCTTATGAGAAGACTATGTTTATGGTGCCTA
260 TTTCTTGCGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTA
** * * *
914348 ATCCAAAAAAGAATGTGGATTAGTATGACTATTCATATTTCTTTTATTTAAGAGACAAAACTCTG
325 ATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTCTTTTATTTAAGAGAC-AAACTTTG
*
914413 ATTATATCAAAAACGGTGGAAAGAAAAGCTTTGCTTGCGACACCAAAGCATCAATGTCATGTATC
389 ATTATATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* *
914478 TAAAT-ATTTGGTATGTGTTCTAG
454 TAAATGA-TGGGTATGTGTTCTTG
* *
914501 GTTCCCAATCTTGAAAAGAATGGAGACTGCTTT-GAGAAACGATGCTTGTCATATTTAAGAGATT
1 GTTCCCAATCTTGAAAAGAATGGAGACTG-TTTCGAGAATCGATGCTTGTCATATTTAAGAGATG
* * *
914565 AAATTTGATTTTAAGAAAAATACGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATC
65 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATC
* * *
914630 TTTTATCCCAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAAATCACTACTA
130 ATTTATCCCAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAAATCATTACTA
* * * *
914695 GAGTCCATGTTTGCCTCATTTGAGGTACGAATTTATTCTTTGCAATAATTGGTTGAAAGAAAGCC
195 GAATCCATGTTTGTCTCATTTGAGGCACGAATTTAGTCTTTGCAATAATTGGTTGAAAGAAAGCC
* * * *
914760 CTTCTTGCGATGCCAAAAGACCAATATATTGTATCCTTATGAGACGACTATGTTAATGGTGCCTA
260 TTTCTTGCGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTA
* * * *
914825 AACCTGAAAAGAATGGGGATTAGTATGACTATTCAAGTTTCTCTTATTTATGAGACAAAACTTTG
325 ATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTCTTTTATTTAAGAGAC-AAACTTTG
* * *
914890 ATCATATCAAAAACGGTGGAAAGAAATGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATA
389 ATTATATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
**
914955 TAAATGATGGAAATGTGTTCTTG
454 TAAATGATGGGTATGTGTTCTTG
* * * *
914978 GTTCCCAATCTTTAAAAGAATGGAGACTATTTCGAGAATTGAAGCTT-TCATATTTAAGAGATGA
1 GTTCCCAATCTTGAAAAGAATGGAGACTGTTTCGAGAATCGATGCTTGTCATATTTAAGAGATGA
*
915042 ATTTTGATTTTAAGGAAAATAGGGTAAAGAAAAG-TTTTCCATGCAAAA-AAAACCATCAATATC
66 ATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTT-CATGCAAAAGAAAACCATCAATATC
* * * *
915105 ATTTATCCTAGTGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTA
130 ATTTATCCCAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAAATCATTACTA
* * * *
915170 GAATCCAAGTTTGTCTTATTTGAGGCACGAATTTAGTCTCTACAATAATTGGTTGAAAGAAAGCC
195 GAATCCATGTTTGTCTCATTTGAGGCACGAATTTAGTCTTTGCAATAATTGGTTGAAAGAAAGCC
* * * * *
915235 TTTCATGCGATGCCAAAACATCAATATAATGTATCCTTAGGAGAAGACTATGTTTATGGTACCTA
260 TTTCTTGCGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTA
* * *
915300 ATCCTGAAATGAATGGGGATTATTATGACTATTCATGCTTCTTTTATTTAAGAGACAAACTTTGA
325 ATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTCTTTTATTTAAGAGACAAACTTTGA
* *
915365 TTATTTCAAAAACGGTGGAAAGAAAAGATTTTC
390 TTATATCAAAAACGGTGGAAAGAAAAGCTTTTC
915398 ATGCAAAAGA
Statistics
Matches: 1622, Mismatches: 203, Indels: 45
0.87 0.11 0.02
Matches are distributed among these distances:
468 3 0.00
469 107 0.07
470 8 0.00
471 1 0.00
474 38 0.02
475 242 0.15
476 675 0.42
477 543 0.33
478 5 0.00
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (476 bp):
GTTCCCAATCTTGAAAAGAATGGAGACTGTTTCGAGAATCGATGCTTGTCATATTTAAGAGATGA
ATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCA
TTTATCCCAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAAATCATTACTAG
AATCCATGTTTGTCTCATTTGAGGCACGAATTTAGTCTTTGCAATAATTGGTTGAAAGAAAGCCT
TTCTTGCGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAA
TCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTCTTTTATTTAAGAGACAAACTTTGAT
TATATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTA
AATGATGGGTATGTGTTCTTG
Found at i:915031 original size:953 final size:949
Alignment explanation
Indices: 913079--915391 Score: 3550
Period size: 953 Copynumber: 2.4 Consensus size: 949
913069 GATCCTAATA
* *
913079 GTTCCTAATCTTGAAAAGAATGGGGACTGTTTCGAGAGTTGATGCTTGTCATATTTAAGAGATGA
1 GTTCCTAATCTTGAAAAGAATGGAGACTGTTTCGAGAATTGATGCTTGTCATATTTAAGAGATGA
*
913144 ATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGTTTTCCAAGCAAAAAAGAACCATCAATATCA
66 ATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGTTTT-CATGCAAAAAA-AACCATCAATATCA
913209 --T-T--T-TGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAATAGA
129 TTTATCCTATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAATAGA
* *
913268 ATCCATGTTTGTCTCGTTTGAGGCACGAATTTAGATTTTACAATAATTGGTTGAAAGAAAGCCTT
194 ATCCATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTACAATAATTGGTTGAAAGAAAGCCTT
* * *
913333 TCTTGCAATGCCAAAACATCAACATATTGTATCCTTATGAGAAAACTATGTTTATGGTACCTAAT
259 TCTTGCGATGCCAAAACATCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTACCTAAT
* *
913398 -CATGAAAAGAATGGGGATTATTATGACTATTCATGGTTCTCTTATTTAAGAGACAAACTTTGAT
324 CCA-GAAAAGAATGGGGATTATTATGACTATTCATGCTTCTTTTATTTAAGAGACAAACTTTGAT
* * *
913462 TATTTCAAAAACGGTGGAAAGATAAGCTTTTCTTGCGACACCAAAGCGTAAATGTCAGGTATCTA
388 TATTTCAAAAACGGTGGAAAGAAAAGCTTTGCTTGCGACACCAAAGCATAAATGTCAGGTATCTA
*
913527 AATATTGGGTATGTGTTCTTCGTTCCCAATCTTGAAAAGAATGGAGACTGTTCTGAGAAACGATG
453 AATATTGGGTATGTGTTCTACGTTCCCAATCTTGAAAAGAATGGAGACTGTTCTGAGAAACGATG
*
913592 CTTGTCATATTTAAGAGATGAATTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTTAATGC
518 CTTGTCATATTTAAGAGATGAAATTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTTAATGC
*
913657 AGAAGAAAACCATCAATATCTTTTATCCCAATGAGGAGAATATGTTTATAGTGCCTAATCACAAA
583 AAAAGAAAACCATCAATATCTTTTATCCCAATGAGGAGAATATGTTTATAGTGCCTAATCACAAA
* * *
913722 ATGAATGAAAATGATTACTAGAGTCCATGTTTGCCTCATTTGAGGCGCAAATTTATTCTTTGCAA
648 ATGAATGAAAATCACTACTAGAGTCCATGTTTGCCTCATTTGAGGCACAAATTTATTCTTTGCAA
* * * *
913787 TAATTGGTTCAAAGAAAGCCTTTCTTGTGATGCCTAAACACCAATATATTGTATCCTTATAAGAT
713 TAATTGGTTCAAAGAAAGCCCTTCTTGCGATGCCAAAACACCAATATATTGTATCCTTATAAGAC
* ** * * *
913852 GACTATGTTTATGGTGCCTATTCTTGAAAAGAATGGGGATTAGTATAACTATTCACGTTTTTCTT
778 GACTATGTTAATGGTGCCTAAACCTGAAAAGAATGGGGATTAGTATAACTATTCAAGTTTCTCTT
** * *
913917 ATTTAAAAGATGAAACTTTGATTATATCAAAAATGGTGGAAAAAAAAGCTTTTCTTGCGACACCA
843 ATTTAAAAGACAAAACTTTGATCATATCAAAAACGGTGGAAAAAAAAGCTTTTCTTGCGACACCA
* * * **
913982 AAGCATTAATGTTATGTATCGAATGATGGGTATGTGTTCTTG
908 AAGCATCAATGTCATGTATCAAATGATGGAAATGTGTTCTTG
* * * * *
914024 GTACCTAATCTTGAAAAGAATGGAGACTGTTTCGGGAATCGGTGCTTGTCATATTTAAGGGATGA
1 GTTCCTAATCTTGAAAAGAATGGAGACTGTTTCGAGAATTGATGCTTGTCATATTTAAGAGATGA
* * *
914089 ATTTTGAATTTAAGGAAAATAGGGCAAACAAAAGATTTT-AGTGCAAAAGAAAACCATTAATATC
66 ATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG-TTTTCA-TGCAAAA-AAAACCATCAATATC
* * *
914153 ATTTATCCTAATGAGGAGAATGTGTTCATAGTGCCTAATCAAAAAATGAATGAA-AGTCATTACT
128 ATTTATCCT-ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGA-TCATTAAT
* * * *
914217 AGAATCCATGTTGGTCTCACTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGT
191 AGAATCCATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTACAATAATTGGTTGAAAGAAAGC
* * ** *
914282 CTTTCTTGCGATGCCAAAACACCAATATGTTGTGGCCTTATGAGAAGACTATGTTTATGGTGCCT
256 CTTTCTTGCGATGCCAAAACATCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTACCT
* * * ** *
914347 AATCCAAAAAAGAATGTGGATTAGTATGACTATTCATATTTCTTTTATTTAAGAGACAAAACTCT
321 AATCCAGAAAAGAATGGGGATTATTATGACTATTCATGCTTCTTTTATTTAAGAGAC-AAACTTT
* * *
914412 GATTATATCAAAAACGGTGGAAAGAAAAGCTTTGCTTGCGACACCAAAGCATCAATGTCATGTAT
385 GATTATTTCAAAAACGGTGGAAAGAAAAGCTTTGCTTGCGACACCAAAGCATAAATGTCAGGTAT
* *
914477 CTAAATATTTGGTATGTGTTCTAGGTTCCCAATCTTGAAAAGAATGGAGACTGCTT-TGAGAAAC
450 CTAAATATTGGGTATGTGTTCTACGTTCCCAATCTTGAAAAGAATGGAGACTG-TTCTGAGAAAC
* * *
914541 GATGCTTGTCATATTTAAGAGATTAAATTTGATTTTAAGAAAAATACGGCAAAGAAAAGATTTTC
514 GATGCTTGTCATATTTAAGAGATGAAATTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTTA
914606 ATGCAAAAGAAAACCATCAATATCTTTTATCCCAATGAGGAGAATATGTTTATAGTGCCTAATCA
579 ATGCAAAAGAAAACCATCAATATCTTTTATCCCAATGAGGAGAATATGTTTATAGTGCCTAATCA
* *
914671 CAAAATGAATGAAAATCACTACTAGAGTCCATGTTTGCCTCATTTGAGGTACGAATTTATTCTTT
644 CAAAATGAATGAAAATCACTACTAGAGTCCATGTTTGCCTCATTTGAGGCACAAATTTATTCTTT
* * *
914736 GCAATAATTGGTTGAAAGAAAGCCCTTCTTGCGATGCCAAAAGACCAATATATTGTATCCTTATG
709 GCAATAATTGGTTCAAAGAAAGCCCTTCTTGCGATGCCAAAACACCAATATATTGTATCCTTATA
*
914801 AGACGACTATGTTAATGGTGCCTAAACCTGAAAAGAATGGGGATTAGTATGACTATTCAAGTTTC
774 AGACGACTATGTTAATGGTGCCTAAACCTGAAAAGAATGGGGATTAGTATAACTATTCAAGTTTC
** * *
914866 TCTTATTTATGAGACAAAACTTTGATCATATCAAAAACGGTGGAAAGAAATGCTTTTCTTGCGAC
839 TCTTATTTAAAAGACAAAACTTTGATCATATCAAAAACGGTGGAAAAAAAAGCTTTTCTTGCGAC
*
914931 ACCAAAGCATCAATGTCATGTATATAAATGATGGAAATGTGTTCTTG
904 ACCAAAGCATCAATGTCATGTAT-CAAATGATGGAAATGTGTTCTTG
* * * *
914978 GTTCCCAATCTTTAAAAGAATGGAGACTATTTCGAGAATTGAAGCTT-TCATATTTAAGAGATGA
1 GTTCCTAATCTTGAAAAGAATGGAGACTGTTTCGAGAATTGATGCTTGTCATATTTAAGAGATGA
*
915042 ATTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGTTTTCCATGCAAAAAAAACCATCAATATCAT
66 ATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGTTTT-CATGCAAAAAAAACCATCAATATCAT
*
915107 TTATCCTAGTGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGA
130 TTATCCTA-TGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAATAGA
* * * *
915172 ATCCAAGTTTGTCTTATTTGAGGCACGAATTTAGTCTCTACAATAATTGGTTGAAAGAAAGCCTT
194 ATCCATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTACAATAATTGGTTGAAAGAAAGCCTT
* * *
915237 TCATGCGATGCCAAAACATCAATATAATGTATCCTTAGGAGAAGACTATGTTTATGGTACCTAAT
259 TCTTGCGATGCCAAAACATCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTACCTAAT
* *
915302 CCTGAAATGAATGGGGATTATTATGACTATTCATGCTTCTTTTATTTAAGAGACAAACTTTGATT
324 CCAGAAAAGAATGGGGATTATTATGACTATTCATGCTTCTTTTATTTAAGAGACAAACTTTGATT
915367 ATTTCAAAAACGGTGGAAAGAAAAG
389 ATTTCAAAAACGGTGGAAAGAAAAG
915392 ATTTTCATGC
Statistics
Matches: 1226, Mismatches: 123, Indels: 32
0.89 0.09 0.02
Matches are distributed among these distances:
944 1 0.00
945 109 0.09
946 6 0.00
947 1 0.00
948 1 0.00
950 1 0.00
951 36 0.03
952 451 0.37
953 559 0.46
954 61 0.05
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (949 bp):
GTTCCTAATCTTGAAAAGAATGGAGACTGTTTCGAGAATTGATGCTTGTCATATTTAAGAGATGA
ATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGTTTTCATGCAAAAAAAACCATCAATATCATT
TATCCTATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAATAGAAT
CCATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTACAATAATTGGTTGAAAGAAAGCCTTTC
TTGCGATGCCAAAACATCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTACCTAATCC
AGAAAAGAATGGGGATTATTATGACTATTCATGCTTCTTTTATTTAAGAGACAAACTTTGATTAT
TTCAAAAACGGTGGAAAGAAAAGCTTTGCTTGCGACACCAAAGCATAAATGTCAGGTATCTAAAT
ATTGGGTATGTGTTCTACGTTCCCAATCTTGAAAAGAATGGAGACTGTTCTGAGAAACGATGCTT
GTCATATTTAAGAGATGAAATTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTTAATGCAAA
AGAAAACCATCAATATCTTTTATCCCAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATG
AATGAAAATCACTACTAGAGTCCATGTTTGCCTCATTTGAGGCACAAATTTATTCTTTGCAATAA
TTGGTTCAAAGAAAGCCCTTCTTGCGATGCCAAAACACCAATATATTGTATCCTTATAAGACGAC
TATGTTAATGGTGCCTAAACCTGAAAAGAATGGGGATTAGTATAACTATTCAAGTTTCTCTTATT
TAAAAGACAAAACTTTGATCATATCAAAAACGGTGGAAAAAAAAGCTTTTCTTGCGACACCAAAG
CATCAATGTCATGTATCAAATGATGGAAATGTGTTCTTG
Found at i:915300 original size:158 final size:157
Alignment explanation
Indices: 915090--915619 Score: 412
Period size: 158 Copynumber: 3.4 Consensus size: 157
915080 CCATGCAAAA
* * * *
915090 AAAACCATCAATATCATTTATCC-TAGTGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
1 AAAACCATCAATATAATGTATCCTTAG-GAGAAGAATATGTTTATAGTGCCTAATCACAAAATGA
* * *
915154 ATGAAGATCATTAGTAGAATCCAAGTTTGTCTTATTTGAGGCACGAATTTAGTCTCTACAATAAT
65 ATGAAGATCATTA-TAGAATCCATGTTTGTCTTATTTGAGGCACAAATTTATTCT-TACAATAAT
915219 TGGTTGAAAGAAAGCCTTTCATGCGATGCC
128 TGGTTGAAAGAAAGCCTTTCATGCGATGCC
* * * *
915249 AAAA-CATCAATATAATGTATCCTTAGGAGAAGACTATGTTTATGGTACCTAATC-CTGAAATGA
1 AAAACCATCAATATAATGTATCCTTAGGAGAAGAATATGTTTATAGTGCCTAATCAC-AAAATGA
** * * * * * * * *
915312 ATGGGGATTATTAT-GACTATTCATGCTTCTTTTATTTAAGAG-ACAAACTTTGATTATTTCAA-
65 ATGAAGATCATTATAGA--ATCCATGTTTGTCTTATTTGAG-GCACAAA-TTT-ATTCTTACAAT
** * ** * *
915374 AAACGGTGGAAAGAAAAGATTTTCATGCAAAAG--
125 AATTGGTTGAAAG-AAAGCCTTTCATGC-GATGCC
** * ** * *
915407 AAAACCATCAATATCTTTTATCCCAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAA
1 AAAACCATCAATATAATGTATCCTTAGGAGAAGAATATGTTTATAGTGCCTAATCACAAAATGAA
* * * * * * *
915472 TGAAAATCGTTACTAGAGTCCATGTTTGCCTCATTTGAGGCGCAAATTTATTCTTTGCAATAATT
66 TGAAGATCATTA-TAGAATCCATGTTTGTCTTATTTGAGGCACAAATTTATTC-TTACAATAATT
* *
915537 GGTTCAAAGAAAGCCTTTCTTGCGATGCC
129 GGTTGAAAGAAAGCCTTTCATGCGATGCC
* * * ** * * *
915566 TAAA-CACCAATATATTGTATCCTTATAAGATGACTATGTTTATGGTGCCTAATC
1 AAAACCATCAATATAATGTATCCTTAGGAGAAGAATATGTTTATAGTGCCTAATC
915620 TTGAAAAGAA
Statistics
Matches: 278, Mismatches: 75, Indels: 37
0.71 0.19 0.09
Matches are distributed among these distances:
156 2 0.01
157 7 0.03
158 149 0.54
159 111 0.40
160 7 0.03
161 2 0.01
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (157 bp):
AAAACCATCAATATAATGTATCCTTAGGAGAAGAATATGTTTATAGTGCCTAATCACAAAATGAA
TGAAGATCATTATAGAATCCATGTTTGTCTTATTTGAGGCACAAATTTATTCTTACAATAATTGG
TTGAAAGAAAGCCTTTCATGCGATGCC
Found at i:915429 original size:317 final size:317
Alignment explanation
Indices: 915067--915708 Score: 930
Period size: 317 Copynumber: 2.0 Consensus size: 317
915057 AAAATAGGGT
* * *
915067 AAAGAAAAGTTTTCCATGCAAAAAAAACCATCAATATCATTTATCCTAGTGAGGAGAATGTGTTT
1 AAAGAAAAGTTTTCCATGCAAAAAAAACCATCAATATCATTTATCCCAATGAGGAGAATATGTTT
* * * *
915132 ATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAATCCAAGTTTGTCTTATTTGAGGCA
66 ATAGTGCCTAATCACAAAATGAATGAAAATCATTACTAGAATCCAAGTTTGCCTCATTTGAGGCA
* * *
915197 CGAATTTAGTCTCTACAATAATTGGTTGAAAGAAAGCCTTTCATGCGATGCCAAAACATCAATAT
131 CAAATTTAGTCTCTACAATAATTGGTTCAAAGAAAGCCTTTCATGCGATGCCAAAACACCAATAT
* * *
915262 AATGTATCCTTAGGAGAAGACTATGTTTATGGTACCTAATCCTGAAATGAATGGGGATTATTATG
196 AATGTATCCTTAGAAGAAGACTATGTTTATGGTACCTAATCCTGAAAAGAATGGGGATTAGTATG
* * *
915327 ACTATTCATGCTTCTT-TTATTTAAGAGA-CAAACTTTGATTATTTCAAAAACGGTGG
261 ACTATTCACG-TTCTTCTTATTTAAAAGATCAAACTTTGATTATATCAAAAACGGTGG
*
915383 AAAGAAAAGATTTT-CATGCAAAAGAAAACCATCAATATCTTTTATCCCAATGAGGAGAATATGT
1 AAAGAAAAG-TTTTCCATGCAAAA-AAAACCATCAATATCATTTATCCCAATGAGGAGAATATGT
* * *
915447 TTATAGTGCCTAATCACAAAATGAATGAAAATCGTTACTAGAGTCCATGTTTGCCTCATTTGAGG
64 TTATAGTGCCTAATCACAAAATGAATGAAAATCATTACTAGAATCCAAGTTTGCCTCATTTGAGG
* * * * * *
915512 CGCAAATTTATTCTTTGCAATAATTGGTTCAAAGAAAGCCTTTCTTGCGATGCCTAAACACCAAT
129 CACAAATTTAGTCTCTACAATAATTGGTTCAAAGAAAGCCTTTCATGCGATGCCAAAACACCAAT
* * * * *
915577 ATATTGTATCCTTATAAGATGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTA
194 ATAATGTATCCTTAGAAGAAGACTATGTTTATGGTACCTAATCCTGAAAAGAATGGGGATTAGTA
* *
915642 TGACTATTCACGTTTTTCTTATTTAAAAGATGAAACTTTGATTATATCAAAAACGGTGG
259 TGACTATTCACGTTCTTCTTATTTAAAAGATCAAACTTTGATTATATCAAAAACGGTGG
*
915701 AAATAAAA
1 AAAGAAAA
915709 AGCTTTTCTT
Statistics
Matches: 288, Mismatches: 34, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
316 22 0.08
317 233 0.81
318 33 0.11
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33
Consensus pattern (317 bp):
AAAGAAAAGTTTTCCATGCAAAAAAAACCATCAATATCATTTATCCCAATGAGGAGAATATGTTT
ATAGTGCCTAATCACAAAATGAATGAAAATCATTACTAGAATCCAAGTTTGCCTCATTTGAGGCA
CAAATTTAGTCTCTACAATAATTGGTTCAAAGAAAGCCTTTCATGCGATGCCAAAACACCAATAT
AATGTATCCTTAGAAGAAGACTATGTTTATGGTACCTAATCCTGAAAAGAATGGGGATTAGTATG
ACTATTCACGTTCTTCTTATTTAAAAGATCAAACTTTGATTATATCAAAAACGGTGG
Found at i:915546 original size:159 final size:156
Alignment explanation
Indices: 915067--915548 Score: 415
Period size: 159 Copynumber: 3.0 Consensus size: 156
915057 AAAATAGGGT
* *
915067 AAAGAAAAGTTTTCCATGCAAAA-AAAACCATCAATATCATTTATCCTAGTGAGGAGAATGTGTT
1 AAAGAAAAGTTTT-CATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATATGTT
* *
915131 TATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAATCCAAGTTTGTCTTATTTGAGGC
65 TATAGTGCCTAATCACAAAATGAATGAAGATCATTA-TAGAATCCATGTTTGCCTTATTTGAGGC
* * *
915196 ACGAATTTAGTCTCTACAATAATTGGTTG
129 ACAAATTTATTCT-TTCAATAATTGGTTG
* * * * * * * * *
915225 AAAG-AAAGCCTTTCATGC-GATGCCAAAA-CATCAATATAATGTATCCTTAGGAGAAGACTATG
1 AAAGAAAAG-TTTTCATGCAAAAG--AAAACCATCAATATCATTTATCCTAATGAGGAGAATATG
* * * ** * * * *
915287 TTTATGGTACCTAATC-CTGAAATGAATGGGGATTATTAT-GACTATTCATGCTT-CTTTTATTT
63 TTTATAGTGCCTAATCAC-AAAATGAATGAAGATCATTATAGA--ATCCATGTTTGC-CTTATTT
* * ** *
915349 AAGAG-ACAAACTTTGATTATTTCAA-AAACGGTGG
124 GAG-GCACAAA-TTT-ATTCTTTCAATAATTGGTTG
* *
915383 AAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCTTTTATCCCAATGAGGAGAATATGTT
1 AAAGAAAAG-TTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATATGTT
* * * *
915448 TATAGTGCCTAATCACAAAATGAATGAAAATCGTTACTAGAGTCCATGTTTGCCTCATTTGAGGC
65 TATAGTGCCTAATCACAAAATGAATGAAGATCATTA-TAGAATCCATGTTTGCCTTATTTGAGGC
* *
915513 GCAAATTTATTCTTTGCAATAATTGGTTC
129 ACAAATTTATTCTTT-CAATAATTGGTTG
915542 AAAGAAA
1 AAAGAAA
915549 GCCTTTCTTG
Statistics
Matches: 241, Mismatches: 62, Indels: 41
0.70 0.18 0.12
Matches are distributed among these distances:
156 3 0.01
157 17 0.07
158 103 0.43
159 108 0.45
160 8 0.03
161 2 0.01
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.32
Consensus pattern (156 bp):
AAAGAAAAGTTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATATGTTT
ATAGTGCCTAATCACAAAATGAATGAAGATCATTATAGAATCCATGTTTGCCTTATTTGAGGCAC
AAATTTATTCTTTCAATAATTGGTTG
Found at i:916329 original size:33 final size:33
Alignment explanation
Indices: 916268--916332 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
916258 TAGCCAAACT
* * *
916268 TGTATCGATACACCAAAGTATGTTTCGATACAA
1 TGTATCGATACACAAAAATATGTATCGATACAA
916301 TGTATCGATACACAAAAA-ATTGTATCGATACA
1 TGTATCGATACACAAAAATA-TGTATCGATACA
916333 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 1 0.04
33 27 0.96
ACGTcount: A:0.40, C:0.17, G:0.14, T:0.29
Consensus pattern (33 bp):
TGTATCGATACACAAAAATATGTATCGATACAA
Found at i:922474 original size:13 final size:13
Alignment explanation
Indices: 922456--922520 Score: 85
Period size: 13 Copynumber: 5.0 Consensus size: 13
922446 ACATTTTTCT
*
922456 TTGTATTGATACA
1 TTGTATCGATACA
922469 TTGTATCGATACA
1 TTGTATCGATACA
* *
922482 CTATATCGATACA
1 TTGTATCGATACA
*
922495 TTGTATCAATACA
1 TTGTATCGATACA
*
922508 CTGTATCGATACA
1 TTGTATCGATACA
922521 GGGGGATTAT
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 44 1.00
ACGTcount: A:0.34, C:0.17, G:0.12, T:0.37
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:922499 original size:26 final size:26
Alignment explanation
Indices: 922463--922520 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
922453 TCTTTGTATT
*
922463 GATACATTGTATCGATACACTATATC
1 GATACATTGTATCAATACACTATATC
*
922489 GATACATTGTATCAATACACTGTATC
1 GATACATTGTATCAATACACTATATC
922515 GATACA
1 GATACA
922521 GGGGGATTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.19, G:0.12, T:0.33
Consensus pattern (26 bp):
GATACATTGTATCAATACACTATATC
Found at i:922684 original size:21 final size:21
Alignment explanation
Indices: 922638--922684 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
922628 AAATCTGTTG
922638 CAAAA-TACTTGTTTTTCACTT
1 CAAAACTACTTGTTTTTCAC-T
922659 C-AAACTACTTCGTTTTTCA-T
1 CAAAACTACTT-GTTTTTCACT
922679 CAAAAC
1 CAAAAC
922685 CATCATCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
20 5 0.22
21 10 0.43
22 8 0.35
ACGTcount: A:0.32, C:0.23, G:0.04, T:0.40
Consensus pattern (21 bp):
CAAAACTACTTGTTTTTCACT
Found at i:925104 original size:13 final size:13
Alignment explanation
Indices: 925086--925111 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
925076 ACACCAAAGT
925086 ATGTATCGATACA
1 ATGTATCGATACA
925099 ATGTATCGATACA
1 ATGTATCGATACA
925112 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:925109 original size:33 final size:33
Alignment explanation
Indices: 925067--925129 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
925057 TAGCCAAACT
* *
925067 TGTATCGATACAC-CAAAGTATGTATCGATACAA
1 TGTATCGATACACAAAAAAT-TGTATCGATACAA
925100 TGTATCGATACACAAAAAATTGTATCGATA
1 TGTATCGATACACAAAAAATTGTATCGATA
925130 AATTGGCTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
33 23 0.85
34 4 0.15
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.29
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:926616 original size:52 final size:52
Alignment explanation
Indices: 926541--926686 Score: 213
Period size: 52 Copynumber: 2.8 Consensus size: 52
926531 AATATGAAAT
*
926541 TTTGCCTGCATGTATCAATACATTTATTAGTGTATCGATACATCTGGGCAAA
1 TTTGCCTGCATGTATCGATACATTTATTAGTGTATCGATACATCTGGGCAAA
* *
926593 TTTGCCTTCATGTATCGATACATTT-TATAGTGTATCGATACATCTGGGTAAA
1 TTTGCCTGCATGTATCGATACATTTAT-TAGTGTATCGATACATCTGGGCAAA
*** *
926645 TTTGCCTGCATGTATCGATACAAAGATCAGTGTATCGATACA
1 TTTGCCTGCATGTATCGATACATTTATTAGTGTATCGATACA
926687 GTTGAGTAAT
Statistics
Matches: 84, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
51 1 0.01
52 82 0.98
53 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (52 bp):
TTTGCCTGCATGTATCGATACATTTATTAGTGTATCGATACATCTGGGCAAA
Found at i:927314 original size:52 final size:52
Alignment explanation
Indices: 927212--927381 Score: 162
Period size: 52 Copynumber: 3.2 Consensus size: 52
927202 GATATTGGGT
* * * * *
927212 TTAAAGATGAGAAAAAGGATGTCAATGTGCTGATTCACGGTCAGCGACATTAGAC
1 TTAAAGATGAG-AAAA--ATGCCAATGTGCTGATTCAAGGTCAACAACATTGGAC
* **
927267 TTGAAGATGAGAAAAATGCCAATGTGCTGATTCAAGGTCAACAACATTGGGTT
1 TTAAAGATGAGAAAAATGCCAATGTGCTGATTCAAGGTCAACAACATT-GGAC
** * * * *
927320 TTAAAGATGATG-AAGGTGCCAATATGCTGATTCAATGCCAACAATATTGGAC
1 TTAAAGATGA-GAAAAATGCCAATGTGCTGATTCAAGGTCAACAACATTGGAC
927372 TTAAAGATGA
1 TTAAAGATGA
927382 AGATGAGAAA
Statistics
Matches: 96, Mismatches: 17, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
52 41 0.43
53 40 0.42
54 5 0.05
55 10 0.10
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.26
Consensus pattern (52 bp):
TTAAAGATGAGAAAAATGCCAATGTGCTGATTCAAGGTCAACAACATTGGAC
Found at i:927418 original size:67 final size:68
Alignment explanation
Indices: 927322--927448 Score: 177
Period size: 67 Copynumber: 1.9 Consensus size: 68
927312 ATTGGGTTTT
* *
927322 AAAGATGATGAAGGTGCCAATATGCTGATTCAAT-GCCAACAATATTGGACTTAAAGATGAAGAT
1 AAAGATGATAAAGATGCCAATATGCTGATTC-ATGGCCAACAATATTGGACTTAAAGATGAAGAT
927386 GAGA
65 GAGA
* ** *
927390 AAAG-TGATAAAGATGCCAATATGTTGATTCATGGCCAATGATATTGGGCTTAAAGATGA
1 AAAGATGATAAAGATGCCAATATGCTGATTCATGGCCAACAATATTGGACTTAAAGATGA
927449 GAAAAAGGAT
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
66 2 0.04
67 46 0.88
68 4 0.08
ACGTcount: A:0.39, C:0.11, G:0.24, T:0.26
Consensus pattern (68 bp):
AAAGATGATAAAGATGCCAATATGCTGATTCATGGCCAACAATATTGGACTTAAAGATGAAGATG
AGA
Found at i:927566 original size:43 final size:43
Alignment explanation
Indices: 927505--927643 Score: 188
Period size: 43 Copynumber: 3.1 Consensus size: 43
927495 TAAAGATGGA
927505 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* * *
927548 AAAGGTGCCAATGTGCTGATTCAAGGCCAACTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
*
927591 AAAGAAGAAGGTGCCAATATGCTGATTCAAAGCCAGCTATATTGGACTT
1 -----A-AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
927640 AAAG
1 AAAG
927644 AAGAAGATGC
Statistics
Matches: 83, Mismatches: 7, Indels: 12
0.81 0.07 0.12
Matches are distributed among these distances:
43 43 0.52
44 1 0.01
48 1 0.01
49 38 0.46
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (43 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
Found at i:927631 original size:92 final size:94
Alignment explanation
Indices: 927452--927643 Score: 298
Period size: 92 Copynumber: 2.0 Consensus size: 94
927442 AAGATGAGAA
* *
927452 AAAGGATGTCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCAAT
1 AAAGGATGCCAATATGCTGATTCAAGGCCAACTACATTGAACTTAAAGA--GAAAAGGTGCCAAT
*
927517 ATGCTGATTCAAGGCCAGCTATATTGGACTT
64 ATGCTGATTCAAAGCCAGCTATATTGGACTT
* * *
927548 AAAGG-TGCCAATGTGCTGATTCAAGGCCAACTACATTGGACTTAAAGA-AGAAGGTGCCAATAT
1 AAAGGATGCCAATATGCTGATTCAAGGCCAACTACATTGAACTTAAAGAGAAAAGGTGCCAATAT
927611 GCTGATTCAAAGCCAGCTATATTGGACTT
66 GCTGATTCAAAGCCAGCTATATTGGACTT
927640 AAAG
1 AAAG
927644 AAGAAGATGC
Statistics
Matches: 90, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
92 46 0.51
95 39 0.43
96 5 0.06
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (94 bp):
AAAGGATGCCAATATGCTGATTCAAGGCCAACTACATTGAACTTAAAGAGAAAAGGTGCCAATAT
GCTGATTCAAAGCCAGCTATATTGGACTT
Found at i:927635 original size:49 final size:49
Alignment explanation
Indices: 927461--927655 Score: 249
Period size: 49 Copynumber: 4.0 Consensus size: 49
927451 AAAAGGATGT
* *
927461 CAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA---AGAAGGTGC
*
927513 CAATATGCTGATTCAAGGCCAGCTATATTGGACTT-----A-AAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGC
* *
927556 CAATGTGCTGATTCAAGGCCAACTACATTGGACTTAAAGAAGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGC
* * *
927605 CAATATGCTGATTCAAAGCCAGCTATATTGGACTTAAAGAAGAAGATGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGC
927654 CA
1 CA
927656 CCAACTTCTG
Statistics
Matches: 127, Mismatches: 10, Indels: 15
0.84 0.07 0.10
Matches are distributed among these distances:
43 39 0.31
44 1 0.01
48 1 0.01
49 53 0.42
52 33 0.26
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.24
Consensus pattern (49 bp):
CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGC
Found at i:927738 original size:58 final size:59
Alignment explanation
Indices: 927664--927966 Score: 361
Period size: 58 Copynumber: 5.2 Consensus size: 59
927654 CACCAACTTC
*
927664 TGTGGGCTTTTG--AAGGTTGCCATTGACTTGTGGGCTTTGGAAAAGGGTGCCACTGACT
1 TGTGGGC-TTTGAAAAGGTTGCCATTGACTTGTGGGCTTTGGAAAAGGATGCCACTGACT
* * * * *
927722 TGTGGGCTTT-TAAAGGTTGCCATTGACTTGTGGGCTTTAGGAGAAGGGTGGCACTGATT
1 TGTGGGCTTTGAAAAGGTTGCCATTGACTTGTGGGCTTT-GGAAAAGGATGCCACTGACT
* *
927781 TGTGGGCTTTGAAAAAGAG-TGCCATTGACTTGTGGGCTTTGG--GAGGTTGCCACTGACT
1 TGTGGGCTTTG-AAAAG-GTTGCCATTGACTTGTGGGCTTTGGAAAAGGATGCCACTGACT
* * * *
927839 TGTGGGCTTTGGGAAAAGGGTGCCACTGATTTGTGGGCTTT-GAAAAAGATGCCACTGACT
1 TGTGGGCTTT--GAAAAGGTTGCCATTGACTTGTGGGCTTTGGAAAAGGATGCCACTGACT
* * *
927899 TGTGGACTTTGAAAAAGATGCCATTGACTTGTGGGCTTT-GAAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAAGGTTGCCATTGACTTGTGGGCTTTGGAAAAGGATGCCACTGACT
927957 TGTGGGCTTT
1 TGTGGGCTTT
927967 TGAAGGGTGA
Statistics
Matches: 214, Mismatches: 20, Indels: 22
0.84 0.08 0.09
Matches are distributed among these distances:
57 3 0.01
58 109 0.51
59 51 0.24
60 25 0.12
61 25 0.12
62 1 0.00
ACGTcount: A:0.20, C:0.15, G:0.33, T:0.32
Consensus pattern (59 bp):
TGTGGGCTTTGAAAAGGTTGCCATTGACTTGTGGGCTTTGGAAAAGGATGCCACTGACT
Found at i:927787 original size:89 final size:88
Alignment explanation
Indices: 927664--927966 Score: 362
Period size: 89 Copynumber: 3.5 Consensus size: 88
927654 CACCAACTTC
* * * *
927664 TGTGGGCTTTTG--AAGGTTGCCATTGACTTGTGGGCTTTGGAAAAGGGTGCCACTGACTTGTGG
1 TGTGGGCTTTGGAAAAGGGTGCCACTGATTTGTGGGCTTTGGAAAAGGGTGCCACTGACTTGTGG
*
927727 GCTTTTAAAGGTTGCCATTGACT
66 GCTTTAAAAGGTTGCCATTGACT
* * * * *
927750 TGTGGGCTTTAGGAGAAGGGTGGCACTGATTTGTGGGCTTTGAAAAAGAGTGCCATTGACTTGTG
1 TGTGGGCTTT-GGAAAAGGGTGCCACTGATTTGTGGGCTTTGGAAAAGGGTGCCACTGACTTGTG
*** *
927815 GGCTTTGGGAGGTTGCCACTGACT
65 GGCTTTAAAAGGTTGCCATTGACT
* *
927839 TGTGGGCTTTGGGAAAAGGGTGCCACTGATTTGTGGGCTTT-GAAAAAGATGCCACTGACTTGTG
1 TGTGGGCTTT-GGAAAAGGGTGCCACTGATTTGTGGGCTTTGGAAAAGGGTGCCACTGACTTGTG
* * *
927903 GACTTTGAAAAAGATGCCATTGACT
65 GGCTTT-AAAAGGTTGCCATTGACT
* *
927928 TGTGGGCTTT-GAAAAGGATGCCACTGACTTGTGGGCTTT
1 TGTGGGCTTTGGAAAAGGGTGCCACTGATTTGTGGGCTTT
927967 TGAAGGGTGA
Statistics
Matches: 184, Mismatches: 29, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
86 10 0.05
87 28 0.15
88 23 0.12
89 123 0.67
ACGTcount: A:0.20, C:0.15, G:0.33, T:0.32
Consensus pattern (88 bp):
TGTGGGCTTTGGAAAAGGGTGCCACTGATTTGTGGGCTTTGGAAAAGGGTGCCACTGACTTGTGG
GCTTTAAAAGGTTGCCATTGACT
Found at i:927893 original size:29 final size:29
Alignment explanation
Indices: 927664--927966 Score: 326
Period size: 29 Copynumber: 10.3 Consensus size: 29
927654 CACCAACTTC
* *
927664 TGTGGGCTTTTG--AAGGTTGCCATTGACT
1 TGTGGGC-TTTGAAAAGGATGCCACTGACT
*
927692 TGTGGGCTTTGGAAAAGGGTGCCACTGACT
1 TGTGGGCTTT-GAAAAGGATGCCACTGACT
* * *
927722 TGTGGGCTTT-TAAAGGTTGCCATTGACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* * * *
927750 TGTGGGCTTTAGGAGAAGGGTGGCACTGATT
1 TGTGGGCTTT--GAAAAGGATGCCACTGACT
* *
927781 TGTGGGCTTTGAAAAAGAGTGCCATTGACT
1 TGTGGGCTTTGAAAAGGA-TGCCACTGACT
** *
927811 TGTGGGCTTTG-GGAGGTTGCCACTGACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* *
927839 TGTGGGCTTTGGGAAAAGGGTGCCACTGATT
1 TGTGGGCTTT--GAAAAGGATGCCACTGACT
*
927870 TGTGGGCTTTGAAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* * *
927899 TGTGGACTTTGAAAAAGATGCCATTGACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
927928 TGTGGGCTTTGAAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
927957 TGTGGGCTTT
1 TGTGGGCTTT
927967 TGAAGGGTGA
Statistics
Matches: 231, Mismatches: 34, Indels: 19
0.81 0.12 0.07
Matches are distributed among these distances:
27 3 0.01
28 53 0.23
29 86 0.37
30 44 0.19
31 45 0.19
ACGTcount: A:0.20, C:0.15, G:0.33, T:0.32
Consensus pattern (29 bp):
TGTGGGCTTTGAAAAGGATGCCACTGACT
Found at i:929433 original size:21 final size:20
Alignment explanation
Indices: 929408--929482 Score: 71
Period size: 22 Copynumber: 3.5 Consensus size: 20
929398 ATTCGGACCC
*
929408 TTTTTGTTGTTGTTGTTTTT
1 TTTTTTTTGTTGTTGTTTTT
*
929428 TTTTTTGTTTTTGTTTGTTTTT
1 TTTTTT-TTGTTG-TTGTTTTT
*
929450 TTCTTCTTTCGTT-TTGTTTGTT
1 TT-TT-TTTTGTTGTTGTTT-TT
929472 TTTTTTTTGTT
1 TTTTTTTTGTT
929483 TTTTTTAGAG
Statistics
Matches: 45, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
20 11 0.24
21 13 0.29
22 14 0.31
23 5 0.11
24 2 0.04
ACGTcount: A:0.00, C:0.04, G:0.15, T:0.81
Consensus pattern (20 bp):
TTTTTTTTGTTGTTGTTTTT
Found at i:929451 original size:25 final size:25
Alignment explanation
Indices: 929408--929488 Score: 85
Period size: 25 Copynumber: 3.2 Consensus size: 25
929398 ATTCGGACCC
*
929408 TTTTTGTTGTTGTTGTTTTTTTTTTTG
1 TTTTTG-T-TTGTTTTTTTTTTTTTTG
* *
929435 TTTTTGTTTGTTTTTTTCTTCTTTCG
1 TTTTTGTTTGTTTTTTT-TTTTTTTG
*
929461 -TTTTGTTTGTTTTTTTTTTGTTT-
1 TTTTTGTTTGTTTTTTTTTTTTTTG
929484 TTTTT
1 TTTTT
929489 AGAGGATGCC
Statistics
Matches: 46, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
24 8 0.17
25 25 0.54
26 7 0.15
27 6 0.13
ACGTcount: A:0.00, C:0.04, G:0.14, T:0.83
Consensus pattern (25 bp):
TTTTTGTTTGTTTTTTTTTTTTTTG
Found at i:929485 original size:21 final size:21
Alignment explanation
Indices: 929408--929485 Score: 86
Period size: 21 Copynumber: 3.5 Consensus size: 21
929398 ATTCGGACCC
*
929408 TTTTTGTTGTTG-TTGTTTTTT
1 TTTTTGTTTTTGTTTG-TTTTT
929429 TTTTTGTTTTTGTTTGTTTTT
1 TTTTTGTTTTTGTTTGTTTTT
*
929450 TTCTTCTTTCGTTTTGTTTGTTTTT
1 TT-TT-TGT--TTTTGTTTGTTTTT
929475 TTTTTGTTTTT
1 TTTTTGTTTTT
929486 TTTAGAGGAT
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
21 22 0.45
22 5 0.10
23 4 0.08
24 2 0.04
25 16 0.33
ACGTcount: A:0.00, C:0.04, G:0.14, T:0.82
Consensus pattern (21 bp):
TTTTTGTTTTTGTTTGTTTTT
Found at i:938407 original size:52 final size:52
Alignment explanation
Indices: 938332--938457 Score: 234
Period size: 52 Copynumber: 2.4 Consensus size: 52
938322 AATATGAAAT
938332 TTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAA
1 TTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAA
*
938384 TTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGCAAA
1 TTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAA
*
938436 TTAGCCTGCATGTATCGATACA
1 TTTGCCTGCATGTATCGATACA
938458 AAGATCAGTG
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 72 1.00
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (52 bp):
TTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAA
Found at i:938468 original size:52 final size:51
Alignment explanation
Indices: 938335--938477 Score: 216
Period size: 52 Copynumber: 2.7 Consensus size: 51
938325 ATGAAATTTT
*
938335 GCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTT
1 GCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTA
*
938387 GCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGCAAATTA
1 GCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTA
*
938439 GCCTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 GCCTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
938478 GTTGAGTAAT
Statistics
Matches: 85, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
51 2 0.02
52 83 0.98
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (51 bp):
GCCTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAATTA
Found at i:938529 original size:33 final size:33
Alignment explanation
Indices: 938487--938576 Score: 162
Period size: 33 Copynumber: 2.7 Consensus size: 33
938477 AGTTGAGTAA
*
938487 TGTATCGATACATTTTTTCGTAGTAGCTTAAAT
1 TGTATCGATACATTTTTTGGTAGTAGCTTAAAT
*
938520 TGTATCGATACATTTTTTGGCAGTAGCTTAAAT
1 TGTATCGATACATTTTTTGGTAGTAGCTTAAAT
938553 TGTATCGATACATTTTTTGGTAGT
1 TGTATCGATACATTTTTTGGTAGT
938577 CCCCACACAC
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 54 1.00
ACGTcount: A:0.26, C:0.11, G:0.18, T:0.46
Consensus pattern (33 bp):
TGTATCGATACATTTTTTGGTAGTAGCTTAAAT
Found at i:940246 original size:476 final size:476
Alignment explanation
Indices: 938664--942943 Score: 6097
Period size: 476 Copynumber: 9.0 Consensus size: 476
938654 TACAGTTTCT
* * * * *
938664 AATCTTGAAAAGAATGGAGATTGTTTCGGGAATCGATACTTGTCATATTCAAGAGATGAATTTTG
1 AATCTTGAAAAGAATGGAGACTGTTTTGAGAATCGATGCTTGTCATATTTAAGAGATGAATTTTG
* * *
938729 ATTTTAAGGAAAATAGGGCAAACAAAAGATTTT-AGTGCTAAAGAAAACCATTAATATCATTTAT
66 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCA-TGCAAAAGAAAACCATCAATATCATTTAT
* * *
938793 CCTAATGAGGAGAATGTGCTCATAGTGCCTAATCAAAAAATGAATGAAGGTCA-TTACTAGAATC
130 CCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTTA-TAGAATC
* *
938857 CATGTTGGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGTCTTTCT
194 CATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTTCT
*
938922 TGCGATGCCAAAACACCAATATATTGT-GCGCTTATGAGAAGACTATGTTTATGGTGCCTAATCC
259 TGCGATGCCAAAACACCAATATATTGTATC-CTTATGAGAAGACTATGTTTATGGTGCCTAATCC
* * * *
938986 AAAAAACAATGCGGATTAGTATGACTATTCATATTTCTCTTATTTAAGAGACAAAACTTTGATTA
323 TAAAAAGAATGGGGATTAGTATGACTATTCATGTTTCTCTTATTTAAGAGA-AAAACTTTGATTA
* * *
939051 TATTAAAAACGGTGGAAGGAAAAGCTTTGCTTGCGACACCAAAGCATCAATGTCATGTATCTAAA
387 TATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTAAA
* ** *
939116 TGATGGAAATATGTTCTTGGTTCCC
452 TAATGGGTATGTGTTCTTGGTTCCC
* * * * *
939141 AATCTTTAAAAGAATGGAGATTGTTTCGAGAATTGATGCTT-TCATATTTAAGAGATGAATTTTT
1 AATCTTGAAAAGAATGGAGACTGTTTTGAGAATCGATGCTTGTCATATTTAAGAGATGAATTTTG
*
939205 ATTTTAAGGAAAATAGGGAAAAGAAAAG-TTTTCCATGCAAAA-AAAACCATCAATATCATTTAT
66 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTT-CATGCAAAAGAAAACCATCAATATCATTTAT
* * * * *
939268 CCTAATGAGGAGAATGTGTTTATACTGCCTAATTACAAAATGAATGAATATCATTAATAGAATCC
130 CCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTTATAGAATCC
* * *
939333 AAGTTTGTCTCATTTGAGGCATGAATTTAGACTTTACAATAATTGGTTGAAAGAAAGCCTTTCTT
195 ATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTTCTT
* * * *
939398 GCGACGCCAAAACATCAATATAATGTATCCTTATGAGAAGACTATGTTTATGGTACCTAATCCTA
260 GCGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTA
* ** * * * *
939463 AAAAGAATGGGGATTATTATGACTATTCATGCATCTCTTATTTAAAAGACAAGCTTTGATTATTT
325 AAAAGAATGGGGATTAGTATGACTATTCATGTTTCTCTTATTTAAGAGAAAAACTTTGATTATAT
* * *
939528 AAAAAACGGTGGAAAG-AAAGCTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCTAAATAT
390 CAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTAAATAA
939592 TGGGTATGTGTTCTTGGTTCCC
455 TGGGTATGTGTTCTTGGTTCCC
* * *
939614 AATCTTGAAAAGAATGGAGACTGTTCTGAGAAACGATGCTTGTCATATTTAAGAGATGAATTTCG
1 AATCTTGAAAAGAATGGAGACTGTTTTGAGAATCGATGCTTGTCATATTTAAGAGATGAATTTTG
** * *
939679 ATTTTAACAAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCTTTTATC
66 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATC
* * * * * *
939744 CCAATGAGGAGAATATGGTTATAGTGCCTAATCACAAAATGAATGAAAATCATTTATGGAGTCCA
131 CTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTTATAGAATCCA
* * **
939809 TGTTTGCCTCGTTTGAGGCACGAATTTATTCTTTGCAATAATTGGTTGAAAGAAAGCCTTTCTTG
196 TGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTTCTTG
* * * *
939874 CGATGCCTAAACACCAATATATTGTATCCTTATGAGATGACTATGTTTATGGTGCCTAATCTTGA
261 CGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAA
* * *
939939 AAAGAATGGGGATTAGTATGGCTATTCATGTTTTTCTTATTTAAAAGATAAAACTTTGATTATAT
326 AAAGAATGGGGATTAGTATGACTATTCATGTTTCTCTTATTTAAGAGA-AAAACTTTGATTATAT
940004 CAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC-AAATAA
390 CAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTAAATAA
* * *
940068 TGTGTATGTGTCCTTGGTTCCT
455 TGGGTATGTGTTCTTGGTTCCC
*
940090 AATCTTGAAAAGAAAGGAGACTGTTTT-AGGAATCGATGCTTGTCATATTTAAGAGATGAATTTT
1 AATCTTGAAAAGAATGGAGACTGTTTTGA-GAATCGATGCTTGTCATATTTAAGAGATGAATTTT
*
940154 GATTTTAAGGAAAATAGGGCAAAGAAAAGATTTT-AGTGCAAAAGAAAACCATTAATATCATTTA
65 GATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCA-TGCAAAAGAAAACCATCAATATCATTTA
* * * * **
940218 TCCTAATGAGAAGAATGTGCTCATAGTGCCTAGTCAAAAAATGAATGAAGGCCA-TTACTAGAAT
129 TCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTTA-TAGAAT
* * *
940282 CCATGTTGGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGCTTGAAAGAAAGTCTTTC
193 CCATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTTC
* ** *
940347 TTGCGATGCCATAACACCAATATATTGTGCCCTTATGAGAAGACTATGTTTACGGTGCCTAATCC
258 TTGCGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCC
* * * * *
940412 AAAAAAGAATGTGGATTAGTATAACTATTCTTATTTCTCTTATTTAAGAGACAAAACTTTGATTA
323 TAAAAAGAATGGGGATTAGTATGACTATTCATGTTTCTCTTATTTAAGAGA-AAAACTTTGATTA
* * ** * *
940477 AATCAAAAATGGTGGATGGAAAAGCTTTCCTTGCGACACCAAAGCTTCAATGTCATGTATCTAAA
387 TATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTAAA
* **
940542 TGATGGAAATGTGTTCTTGGTTCCC
452 TAATGGGTATGTGTTCTTGGTTCCC
* *
940567 AATCTTTAAAAGAATGGAGACTGTTTCGAGAAT-GCATGCTT-TCATATTTAAGAGATGAATTTT
1 AATCTTGAAAAGAATGGAGACTGTTTTGAGAATCG-ATGCTTGTCATATTTAAGAGATGAATTTT
* * * *
940630 TATTTTAAGGAAAATAGTGAAAAGAAAAG-TTTTCCATGCAAAAAAAAACCATCAATATCATTTA
65 GATTTTAAGGAAAATAGGGCAAAGAAAAGATTTT-CATGCAAAAGAAAACCATCAATATCATTTA
* *
940694 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAATAGAATC
129 TCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTTATAGAATC
* *
940759 CATGTTTGTCTCATTTGAGGCATGAATTTAGACTTTACAATAATTGGTTGAAAGAAAGCCTTTCT
194 CATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTTCT
* * * *
940824 TGCGACGCCAAAACATCAATATAATGTATCCTTATGAGAAGACTATGTTTATGGTACCTAATCCT
259 TGCGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT
* * * *
940889 AAAAAGAATGGGGATTATTATGACTATTCATGCTTCTCTTATTTAAGAGACAAACTTTGATTATT
324 AAAAAGAATGGGGATTAGTATGACTATTCATGTTTCTCTTATTTAAGAGAAAAACTTTGATTATA
*
940954 TCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCTAAATA
389 TCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTAAATA
*
941019 TTGGGTATGTGTTCTTGGTTCCC
454 ATGGGTATGTGTTCTTGGTTCCC
* * * *
941042 ATTCTTGAAAAGAATGGAGACTATCTTGAGAAACGATGCTTGTCATATTTAAGAGATGAATTTTG
1 AATCTTGAAAAGAATGGAGACTGTTTTGAGAATCGATGCTTGTCATATTTAAGAGATGAATTTTG
** * *
941107 ATTTTAACAAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCTTTTATC
66 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATC
* * * * * *
941172 CCAATGAGGAGAATATGGTTATAGTGCCTAATCACAAAATGAATGAAAATCATTTATGGAGTCCA
131 CTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTTATAGAATCCA
* * **
941237 TGTTTGCCTCGTTTGAGGCACGAATTTATTCTTTGCAATAATTGGTTGAAAGAAAGCCTTTCTTG
196 TGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTTCTTG
* * * *
941302 CGATGCCTAAACACCAATATATTGTATCCTTATGAGATGACTATGTTTATGGTGCCTAATCTTGA
261 CGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAA
* * *
941367 AAAGAATGGGGATTAGTATGGCTATTCATGTTTTTCTTATTTAAAAGATAAAACTTTGATTATAT
326 AAAGAATGGGGATTAGTATGACTATTCATGTTTCTCTTATTTAAGAGA-AAAACTTTGATTATAT
941432 CAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC-AAATAA
390 CAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTAAATAA
* * *
941496 TGTGTATGTGTCCTTGGTTCCT
455 TGGGTATGTGTTCTTGGTTCCC
*
941518 AATCTTGAAAAGAAAGGAGACTGTTTT-AGGAATCGATGCTTGTCATATTTAAGAGATGAATTTT
1 AATCTTGAAAAGAATGGAGACTGTTTTGA-GAATCGATGCTTGTCATATTTAAGAGATGAATTTT
*
941582 GATTTTAAGGAAAATAGGGCAAAGAAAAGATTTT-AGTGCAAAAGAAAACCATTAATATCATTTA
65 GATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCA-TGCAAAAGAAAACCATCAATATCATTTA
* * * * **
941646 TCCTAATGAGAAGAATGTGCTCATAGTGCCTAGTCAAAAAATGAATGAAGGCCA-TTACTAGAAT
129 TCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTTA-TAGAAT
* * *
941710 CCATGTTGGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGCTTGAAAGAAAGTCTTTC
193 CCATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTTC
* ** *
941775 TTGCGATGCCATAACACCAATATATTGTGCCCTTATGAGAAGACTATGTTTACGGTGCCTAATCC
258 TTGCGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCC
* * * * *
941840 AAAAAAGAATGTGGATTAGTATAACTATTCTTATTTCTCTTATTTAAGAGACAAAACTTTGATTA
323 TAAAAAGAATGGGGATTAGTATGACTATTCATGTTTCTCTTATTTAAGAGA-AAAACTTTGATTA
* ** * *
941905 AATCAAAAACGGTGGATGGAAAAGCTTTCCTTGCGACACCAAAGCTTCAATGTCATGTATCTAAA
387 TATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTAAA
* **
941970 TGATGGAAATGTGTTCTTGGTTCCC
452 TAATGGGTATGTGTTCTTGGTTCCC
* *
941995 AATCTTTAAAAGAATGGAGACTGTTTCGAGAAT-GCATGCTT-TCATATTTAAGAGATGAATTTT
1 AATCTTGAAAAGAATGGAGACTGTTTTGAGAATCG-ATGCTTGTCATATTTAAGAGATGAATTTT
* * *
942058 TATTTTAAGGAAAATAGTGAAAAGAAAAG-TTTTCCATGCAAAA-AAAACCATCAATATCATTTA
65 GATTTTAAGGAAAATAGGGCAAAGAAAAGATTTT-CATGCAAAAGAAAACCATCAATATCATTTA
* *
942121 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAATAGAATC
129 TCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTTATAGAATC
* *
942186 CATGTTTGTCTCATTTGAGGCATGAATTTAGACTTTACAATAATTGGTTGAAAGAAAGCCTTTCT
194 CATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTTCT
* * * *
942251 TGCGACGCCAAAACATCAATATAATGTATCCTTATGAGAAGACTATGTTTATGGTACCTAATCCT
259 TGCGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT
* * * *
942316 AAAAAGAATGGGGATTATTATGACTATTCATGCTTCTCTTATTTAAGAGACAAACTTTGATTATT
324 AAAAAGAATGGGGATTAGTATGACTATTCATGTTTCTCTTATTTAAGAGAAAAACTTTGATTATA
*
942381 TCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCTAAATA
389 TCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTAAATA
*
942446 TTGGGTATGTGTTCTTGGTTCCC
454 ATGGGTATGTGTTCTTGGTTCCC
* * * *
942469 ATTCTTGAAAAGAATGGAGACTATCTTGAGAAACGATGCTTGTCATATTTAAGAGATGAATTTTG
1 AATCTTGAAAAGAATGGAGACTGTTTTGAGAATCGATGCTTGTCATATTTAAGAGATGAATTTTG
** * *
942534 ATTTTAACAAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCTTTTATC
66 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATC
* ** * * * * *
942599 CCAATGAGGAGAACATGGTTATAGTGCCTAATCACAAAATGAATGAAAATCATTTCTGGAGTCCA
131 CTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTTATAGAATCCA
* **
942664 TGTTTGCCTCATTTGAGGCACGAATTTATTCTTTGCAATAATTGGTTGAAAGAAAGCCTTTCTTG
196 TGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTTCTTG
* * * * *
942729 CGATGCCTAAACACCAATATATTGTATCTTTATGAGATGACTATGTTTATGGTGCCTAATCTTGA
261 CGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAA
* * *
942794 AAAGAATGGGGATTAGTATTG-CTATTCATGTTTTTCTTATTTAAAAGATAAAACTTTGATGATA
326 AAAGAATGGGGATTAGTA-TGACTATTCATGTTTCTCTTATTTAAGAGA-AAAACTTTGATTATA
* *
942858 TCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACATCAAAGCATCAATGTCATGTATC-AAATG
389 TCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTAAATA
*
942922 ATGGGTATATGTTCTTGGTTCC
454 ATGGGTATGTGTTCTTGGTTCC
942944 TGAAAGCTTA
Statistics
Matches: 3362, Mismatches: 404, Indels: 75
0.88 0.11 0.02
Matches are distributed among these distances:
473 98 0.03
474 205 0.06
475 905 0.27
476 1812 0.54
477 340 0.10
478 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.33
Consensus pattern (476 bp):
AATCTTGAAAAGAATGGAGACTGTTTTGAGAATCGATGCTTGTCATATTTAAGAGATGAATTTTG
ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATC
CTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTTATAGAATCCA
TGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTTCTTG
CGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAA
AAAGAATGGGGATTAGTATGACTATTCATGTTTCTCTTATTTAAGAGAAAAACTTTGATTATATC
AAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTAAATAAT
GGGTATGTGTTCTTGGTTCCC
Found at i:940898 original size:158 final size:157
Alignment explanation
Indices: 938772--942802 Score: 763
Period size: 158 Copynumber: 25.4 Consensus size: 157
938762 AGTGCTAAAG
* * * * * * * *
938772 AAAACCATTAATATCATTTATCCTAATGAGGAGAATGTGCTCATAGTGCCTAAT-CAAAAAATGA
1 AAAA-CATCAATATCATGTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCCTAAAAA-GA
* * * * *
938836 ATGAAGGTCATTACTAGAATCCATGTTGGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAAT
64 ATGGAGATCATTA-TAGAATCCATGTTTGTCTCATTTGAGGCATGAATTTAGACTTTACAA-AAT
* *
938901 TGGTTGAAAG-AAAGTCTTTCTTGCGATGCC
127 TGGTTGAAAGAAAAGCCTTTCTTGCGACGCC
* * * * * *
938931 AAAACACCAATAT-ATTGT-GCGCTTATGAGAAGACTATGTTTATGGTGCCTAATCCAAAAAACA
1 AAAACATCAATATCA-TGTATC-CTAATGAGAAGAATATGTTTATGGTGCCTAATCCTAAAAAGA
* * * * * * * *
938994 ATGCG-GATTAGTAT-GACTATTCATATTTCTCTTATTTAAGAGACA-AAACTTT-GA-TTATAT
64 ATG-GAGATCATTATAGA--ATCCATGTTTGTCTCATTT--GAGGCATGAA-TTTAGACTT-TA-
* ** * * *
939054 TAAAAACGGTGGAAGGAAAAG-CTTTGCTTGCGACACC
121 CAAAATTGGTTGAAAGAAAAGCCTTT-CTTGCGACGCC
* * * * * * *
939091 AAAGCATCAATGTCATGTAT-CTAAATGATGGA-AATATGTTCT-TGGTTCCCAATCTTTAAAAG
1 AAAACATCAATATCATGTATCCT-AATGA-GAAGAATATGTT-TATGGTGCCTAATCCTAAAAAG
** ** * * ** * *
939153 AATGGAGATTGTT-TCGAGAATTGATGCTT-TCAT-ATTTAAGAG-ATGAATTTTTATTTTAAGG
63 AATGGAGATCATTAT--AGAATCCATGTTTGTC-TCATTTGAG-GCATGAATTTAGACTTT-A-C
* * * ***
939214 AAAATAGG--GAAAAGAAAAG-TTTTCCATGC-A-AAA
122 AAAATTGGTTG-AAAGAAAAGCCTTT-CTTGCGACGCC
* * * **
939247 AAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATACTGCCTAAT--TACAAAATG
1 AAAA-CATCAATATCATGTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCCTA-AAAA-G
* * *
939310 AATGAATATCATTAATAGAATCCAAGTTTGTCTCATTTGAGGCATGAATTTAGACTTTACAATAA
63 AATGGAGATCATT-ATAGAATCCATGTTTGTCTCATTTGAGGCATGAATTTAGACTTTACAA-AA
939375 TTGGTTGAAAG-AAAGCCTTTCTTGCGACGCC
126 TTGGTTGAAAGAAAAGCCTTTCTTGCGACGCC
* * * *
939406 AAAACATCAATATAATGTATCCTTATGAGAAGACTATGTTTATGGTACCTAATCCTAAAAAGAAT
1 AAAACATCAATATCATGTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCCTAAAAAGAAT
* * * ** * * * * * * *
939471 GGGGATTATTAT-GACTATTCATGCATCTCTTATTTAAAAGACAAG-CTTT-GATTATTTA-AAA
66 GGAGATCATTATAGA--ATCCATGTTTGTCTCATTT--GAGGCATGAATTTAGA--CTTTACAAA
** * * *
939532 AACGGTGGAAAG-AAAGCTTTTCTTGCGACACC
125 ATTGGTTGAAAGAAAAGCCTTTCTTGCGACGCC
* * * * * * * * *
939564 AAAGCATCAATTTCATGTAT-CTAAAT-ATTG-GGTATGTGTTCT-TGGTTCCCAATCTTGAAAA
1 AAAACATCAATATCATGTATCCT-AATGA--GAAGAATATGTT-TATGGTGCCTAATCCTAAAAA
* * * * * * * *
939625 GAATGGAGA-CTGTTCTGAGAAACGATGCTTGTCAT-ATTTAAGAG-ATGAATTTCGATTTTAAC
62 GAATGGAGATC-ATTAT-AGAATCCATGTTTGTC-TCATTTGAG-GCATGAATTTAGACTTT-AC
* * ** * * *
939687 AAAAATAAGG--CAAAGAAAAGATTTTCATGCAAAAG--
122 -AAAAT-TGGTTGAAAGAAAAGCCTTTCTTGC-GACGCC
* * * * * * *
939722 AAAACCATCAATATCTTTTATCCCAATGAGGAGAATATGGTTATAGTGCCTAATCAC-AAAATGA
1 AAAA-CATCAATATCATGTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATC-CTAAAAAGA
* * * * * * * ** *
939786 ATGAAAATCATTTATGGAGTCCATGTTTGCCTCGTTTGAGGCACGAATTTATTCTTTGCAATAAT
64 ATGGAGATCA-TTATAGAATCCATGTTTGTCTCATTTGAGGCATGAATTTAGACTTTACAA-AAT
*
939851 TGGTTGAAAG-AAAGCCTTTCTTGCGATGCC
127 TGGTTGAAAGAAAAGCCTTTCTTGCGACGCC
* * * * * * *
939881 TAAACACCAATAT-ATTGTATCCTTATGAGATGACTATGTTTATGGTGCCTAATCTTGAAAAGAA
1 AAAACATCAATATCA-TGTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCCTAAAAAGAA
* * * * * * * * * * *
939945 TGGGGATTAGTATGGCTATTCATGTTTTTCTTATTTAAAAG-ATAAAACTTT-GA-TTATATCAA
65 TGGAGATCATTATAG-AATCCATGTTTGTCTCATTT-GAGGCAT-GAA-TTTAGACTT-TA-CAA
** * * *
940007 AAACGGTGGAAAGAAAAGCTTTTCTTGCGACACC
124 AATTGGTTGAAAGAAAAGCCTTTCTTGCGACGCC
* * * * ** * * *
940041 AAAGCATCAATGTCATGTAT-CAAAT-A-ATGTGTATGTGTCCT-TGGTTCCTAATCTTGAAAAG
1 AAAACATCAATATCATGTATCCTAATGAGAAGAATATGT-T--TATGGTGCCTAATCCTAAAAAG
* * * * * * * * *
940102 AAAGGAGA-CTGTTTTAGGAATCGATGCTTGTCAT-ATTTAAGAG-ATGAATTTTGATTTTAAGG
63 AATGGAGATC-ATTATA-GAATCCATGTTTGTC-TCATTTGAG-GCATGAATTTAGACTTT-A-C
* ** ** * *
940164 AAAATAGG--GCAAAGAAAAGATTTTAGTGCAAAAG--
122 AAAATTGGTTG-AAAGAAAAGCCTTTCTTGC-GACGCC
* * * * * * * *
940198 AAAACCATTAATATCATTTATCCTAATGAGAAGAATGTGCTCATAGTGCCTAGT-CAAAAAATGA
1 AAAA-CATCAATATCATGTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCCTAAAAA-GA
* ** * * *
940262 ATGAAGGCCATTACTAGAATCCATGTTGGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAAT
64 ATGGAGATCATTA-TAGAATCCATGTTTGTCTCATTTGAGGCATGAATTTAGACTTTACAA-AAT
* * *
940327 TGCTTGAAAG-AAAGTCTTTCTTGCGATGCC
127 TGGTTGAAAGAAAAGCCTTTCTTGCGACGCC
* * ** * * * *
940357 ATAACACCAATAT-ATTGTGCCCTTATGAGAAGACTATGTTTACGGTGCCTAATCCAAAAAAGAA
1 AAAACATCAATATCA-TGTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCCTAAAAAGAA
* * * * * * * * * *
940421 TGTG-GATTAGTATA-ACTATTCTTATTTCTCTTATTTAAGAGACA-AAACTTT-GA-TTAAATC
65 TG-GAGATCATTATAGA--ATCCATGTTTGTCTCATTT--GAGGCATGAA-TTTAGACTT-TA-C
* * ** *
940481 AAAAATGGTGGATGGAAAAG-CTTTCCTTGCGACACC
122 AAAATTGGTTGAAAGAAAAGCCTTT-CTTGCGACGCC
* * * * * * * * *
940517 AAAGCTTCAATGTCATGTAT-CTAAATGATGGA-AATGTGTTCT-TGGTTCCCAATCTTTAAAAG
1 AAAACATCAATATCATGTATCCT-AATGA-GAAGAATATGTT-TATGGTGCCTAATCCTAAAAAG
** ** * * * ** *
940579 AATGGAGACTGTTTCGAGAATGCATGCTT-TCAT-ATTTAAGAG-ATGAATTTTTATTTTA-AGG
63 AATGGAGA-TCATTATAGAATCCATGTTTGTC-TCATTTGAG-GCATGAATTTAGACTTTACA--
* * * * ****
940640 AAAATAG-TGAAAAGAAAAG-TTTTCCATGC-AAAAA
123 AAATTGGTTG-AAAGAAAAGCCTTT-CTTGCGACGCC
* * * * *
940674 AAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC-AAAATGA
1 AAAA-CATCAATATCATGTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATC-CTAAAAAGA
*
940738 ATGAAGATCATTAATAGAATCCATGTTTGTCTCATTTGAGGCATGAATTTAGACTTTACAATAAT
64 ATGGAGATCATT-ATAGAATCCATGTTTGTCTCATTTGAGGCATGAATTTAGACTTTACAA-AAT
940803 TGGTTGAAAG-AAAGCCTTTCTTGCGACGCC
127 TGGTTGAAAGAAAAGCCTTTCTTGCGACGCC
* * * *
940833 AAAACATCAATATAATGTATCCTTATGAGAAGACTATGTTTATGGTACCTAATCCTAAAAAGAAT
1 AAAACATCAATATCATGTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCCTAAAAAGAAT
* * * * * * * * *
940898 GGGGATTATTAT-GACTATTCATGCTTCTCTTATTTAAGAGACA--AACTTT-GATTATTTCAAA
66 GGAGATCATTATAGA--ATCCATGTTTGTCTCATTT--GAGGCATGAA-TTTAGACT-TTACAAA
** * * * *
940959 AACGGTGGAAAGAAAAGCTTTTCTTGCAACACC
125 ATTGGTTGAAAGAAAAGCCTTTCTTGCGACGCC
* * * * * * * * * *
940992 AAAGCATCAATGTCATGTAT-CTAAAT-ATTG-GGTATGTGTTCT-TGGTTCCCATTCTTGAAAA
1 AAAACATCAATATCATGTATCCT-AATGA--GAAGAATATGTT-TATGGTGCCTAATCCTAAAAA
* * * * * *
941053 GAATGGAGA-CTATCT-TGAGAAACGATGCTTGTCAT-ATTTAAGAG-ATGAATTTTGATTTTAA
62 GAATGGAGATC-AT-TAT-AGAATCCATGTTTGTC-TCATTTGAG-GCATGAATTTAGACTTT-A
* * ** * * *
941114 CAAAAATAAGG--CAAAGAAAAGATTTTCATGCAAAAG--
121 C-AAAAT-TGGTTGAAAGAAAAGCCTTTCTTGC-GACGCC
* * * * * * *
941150 AAAACCATCAATATCTTTTATCCCAATGAGGAGAATATGGTTATAGTGCCTAATCAC-AAAATGA
1 AAAA-CATCAATATCATGTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATC-CTAAAAAGA
* * * * * * * ** *
941214 ATGAAAATCATTTATGGAGTCCATGTTTGCCTCGTTTGAGGCACGAATTTATTCTTTGCAATAAT
64 ATGGAGATCA-TTATAGAATCCATGTTTGTCTCATTTGAGGCATGAATTTAGACTTTACAA-AAT
*
941279 TGGTTGAAAG-AAAGCCTTTCTTGCGATGCC
127 TGGTTGAAAGAAAAGCCTTTCTTGCGACGCC
* * * * * * *
941309 TAAACACCAATAT-ATTGTATCCTTATGAGATGACTATGTTTATGGTGCCTAATCTTGAAAAGAA
1 AAAACATCAATATCA-TGTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCCTAAAAAGAA
* * * * * * * * * * *
941373 TGGGGATTAGTATGGCTATTCATGTTTTTCTTATTTAAAAG-ATAAAACTTT-GA-TTATATCAA
65 TGGAGATCATTATAG-AATCCATGTTTGTCTCATTT-GAGGCAT-GAA-TTTAGACTT-TA-CAA
** * * *
941435 AAACGGTGGAAAGAAAAGCTTTTCTTGCGACACC
124 AATTGGTTGAAAGAAAAGCCTTTCTTGCGACGCC
* * * * ** * * *
941469 AAAGCATCAATGTCATGTAT-CAAAT-A-ATGTGTATGTGTCCT-TGGTTCCTAATCTTGAAAAG
1 AAAACATCAATATCATGTATCCTAATGAGAAGAATATGT-T--TATGGTGCCTAATCCTAAAAAG
* * * * * * * * *
941530 AAAGGAGA-CTGTTTTAGGAATCGATGCTTGTCAT-ATTTAAGAG-ATGAATTTTGATTTTAAGG
63 AATGGAGATC-ATTATA-GAATCCATGTTTGTC-TCATTTGAG-GCATGAATTTAGACTTT-A-C
* ** ** * *
941592 AAAATAGG--GCAAAGAAAAGATTTTAGTGCAAAAG--
122 AAAATTGGTTG-AAAGAAAAGCCTTTCTTGC-GACGCC
* * * * * * * *
941626 AAAACCATTAATATCATTTATCCTAATGAGAAGAATGTGCTCATAGTGCCTAGT-CAAAAAATGA
1 AAAA-CATCAATATCATGTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCCTAAAAA-GA
* ** * * *
941690 ATGAAGGCCATTACTAGAATCCATGTTGGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAAT
64 ATGGAGATCATTA-TAGAATCCATGTTTGTCTCATTTGAGGCATGAATTTAGACTTTACAA-AAT
* * *
941755 TGCTTGAAAG-AAAGTCTTTCTTGCGATGCC
127 TGGTTGAAAGAAAAGCCTTTCTTGCGACGCC
* * ** * * * *
941785 ATAACACCAATAT-ATTGTGCCCTTATGAGAAGACTATGTTTACGGTGCCTAATCCAAAAAAGAA
1 AAAACATCAATATCA-TGTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCCTAAAAAGAA
* * * * * * * * * *
941849 TGTG-GATTAGTATA-ACTATTCTTATTTCTCTTATTTAAGAGACA-AAACTTT-GA-TTAAATC
65 TG-GAGATCATTATAGA--ATCCATGTTTGTCTCATTT--GAGGCATGAA-TTTAGACTT-TA-C
** * ** *
941909 AAAAACGGTGGATGGAAAAG-CTTTCCTTGCGACACC
122 AAAATTGGTTGAAAGAAAAGCCTTT-CTTGCGACGCC
* * * * * * * * *
941945 AAAGCTTCAATGTCATGTAT-CTAAATGATGGA-AATGTGTTCT-TGGTTCCCAATCTTTAAAAG
1 AAAACATCAATATCATGTATCCT-AATGA-GAAGAATATGTT-TATGGTGCCTAATCCTAAAAAG
** ** * * * ** *
942007 AATGGAGACTGTTTCGAGAATGCATGCTT-TCAT-ATTTAAGAG-ATGAATTTTTATTTTA-AGG
63 AATGGAGA-TCATTATAGAATCCATGTTTGTC-TCATTTGAG-GCATGAATTTAGACTTTACA--
* * * * ***
942068 AAAATAG-TGAAAAGAAAAG-TTTTCCATGC-A-AAA
123 AAATTGGTTG-AAAGAAAAGCCTTT-CTTGCGACGCC
* * * * *
942101 AAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC-AAAATGA
1 AAAA-CATCAATATCATGTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATC-CTAAAAAGA
*
942165 ATGAAGATCATTAATAGAATCCATGTTTGTCTCATTTGAGGCATGAATTTAGACTTTACAATAAT
64 ATGGAGATCATT-ATAGAATCCATGTTTGTCTCATTTGAGGCATGAATTTAGACTTTACAA-AAT
942230 TGGTTGAAAG-AAAGCCTTTCTTGCGACGCC
127 TGGTTGAAAGAAAAGCCTTTCTTGCGACGCC
* * * *
942260 AAAACATCAATATAATGTATCCTTATGAGAAGACTATGTTTATGGTACCTAATCCTAAAAAGAAT
1 AAAACATCAATATCATGTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCCTAAAAAGAAT
* * * * * * * * *
942325 GGGGATTATTAT-GACTATTCATGCTTCTCTTATTTAAGAGACA--AACTTT-GATTATTTCAAA
66 GGAGATCATTATAGA--ATCCATGTTTGTCTCATTT--GAGGCATGAA-TTTAGACT-TTACAAA
** * * * *
942386 AACGGTGGAAAGAAAAGCTTTTCTTGCAACACC
125 ATTGGTTGAAAGAAAAGCCTTTCTTGCGACGCC
* * * * * * * * * *
942419 AAAGCATCAATGTCATGTAT-CTAAAT-ATTG-GGTATGTGTTCT-TGGTTCCCATTCTTGAAAA
1 AAAACATCAATATCATGTATCCT-AATGA--GAAGAATATGTT-TATGGTGCCTAATCCTAAAAA
* * * * * *
942480 GAATGGAGA-CTATCT-TGAGAAACGATGCTTGTCAT-ATTTAAGAG-ATGAATTTTGATTTTAA
62 GAATGGAGATC-AT-TAT-AGAATCCATGTTTGTC-TCATTTGAG-GCATGAATTTAGACTTT-A
* * ** * * *
942541 CAAAAATAAGG--CAAAGAAAAGATTTTCATGCAAAAG--
121 C-AAAAT-TGGTTGAAAGAAAAGCCTTTCTTGC-GACGCC
* * * * * * * *
942577 AAAACCATCAATATCTTTTATCCCAATGAGGAGAACATGGTTATAGTGCCTAATCAC-AAAATGA
1 AAAA-CATCAATATCATGTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATC-CTAAAAAGA
* * * * * * * ** *
942641 ATGAAAATCATTTCTGGAGTCCATGTTTGCCTCATTTGAGGCACGAATTTATTCTTTGCAATAAT
64 ATGGAGATCA-TTATAGAATCCATGTTTGTCTCATTTGAGGCATGAATTTAGACTTTACAA-AAT
*
942706 TGGTTGAAAG-AAAGCCTTTCTTGCGATGCC
127 TGGTTGAAAGAAAAGCCTTTCTTGCGACGCC
* * * * * * * *
942736 TAAACACCAATAT-ATTGTATCTTTATGAGATGACTATGTTTATGGTGCCTAATCTTGAAAAGAA
1 AAAACATCAATATCA-TGTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCCTAAAAAGAA
942800 TGG
65 TGG
942803 GGATTAGTAT
Statistics
Matches: 2717, Mismatches: 828, Indels: 655
0.65 0.20 0.16
Matches are distributed among these distances:
155 1 0.00
156 45 0.02
157 267 0.10
158 1087 0.40
159 896 0.33
160 379 0.14
161 38 0.01
162 4 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (157 bp):
AAAACATCAATATCATGTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCCTAAAAAGAAT
GGAGATCATTATAGAATCCATGTTTGTCTCATTTGAGGCATGAATTTAGACTTTACAAAATTGGT
TGAAAGAAAAGCCTTTCTTGCGACGCC
Found at i:943956 original size:476 final size:477
Alignment explanation
Indices: 943058--945361 Score: 3197
Period size: 476 Copynumber: 4.8 Consensus size: 477
943048 TTAGGGAAGG
* * *
943058 AAAACTTTGATTATATCAAAAACGGTGGAAAGGAAAGT-TTTTCTTACAACACCAAAGCATCAAT
1 AAAACTTTGATTATATCAAAAACGGTGG-AAGGAAAATCTTTTCTTGCGACACCAAAGCATCAAT
* *
943122 GTCATGTATC-AAATAATGGGTATGTGTCCTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTT
65 GTCATGTATCTAAATAATGGGTATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTT
*
943186 C-AGGAATCGATGCTTGTCATATTTAAGAGATGAATCTTGATTTTAAGGAAAATAGGGCAAAGAA
130 CGA-GAATCGATGCTTGTCATATTTAAGAGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAA
*
943250 AAGATTTT-AGTGCAAAAGAAAACCATTAATATCATTTATCCTAATGA-GAAGAATGTGCTCATA
194 AAGATTTTCA-TGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAA-AATGTGCTCATA
* * * * * *
943313 ATGCCTAATCAGAAAATGAATGAAGGTCATTACTAGAATCAATGTTGGTCTCATTTTAGGCATGG
257 GTGCCTAATCAAAAAATGAATGAAGGTCATTACTAGAATCCATGTTGGTCTCATTTGAGGCACGA
* * *
943378 ATTTAGACTTTGCAATAATTGGTTGAAAGAATGTCTTTCTTGCAATGCCATAACACCAATATATT
322 ATTTAGACTTTGCAATAATTGGTTGAAAGAAAGTCTTTCTTGCGATGCCAAAACACCAATATATT
* * * *
943443 GTGCCCTTATGAGAAGACTATCTTTATGGTGCCTAATCCAAAAAAGCATGTGGATTAGTATGACT
387 GTACCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCAAAAAAGAATGGGGATTAGTATGACT
943508 ATTCATATTTCTCTTATTTAAGAGAC
452 ATTCATATTTCTCTTATTTAAGAGAC
* * *
943534 AAAACTTTGATTATATCGAAAACGGTGGAAGGAAAATCTCTGCTTGCGACACCAAAGCATCAATG
1 AAAACTTTGATTATATCAAAAACGGTGGAAGGAAAATCTTTTCTTGCGACACCAAAGCATCAATG
* ** *
943599 TCATGTATCTAAATGATGGAAATGTGTTCTTGGTTCCCAATCTTTAAAAGAATGGAGACTGTTTC
66 TCATGTATCTAAATAATGGGTATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTTC
* * *
943664 GAGAATTGATGCTT-TCATATTTAAGAGATGAATTTTTATTTTAAGGAAAATAGGGAAAAGAAAA
131 GAGAATCGATGCTTGTCATATTTAAGAGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
* * * * * *
943728 G-TTTTCCAAGCAAAAAAAAACGATCAATATCATTTATCGTAATGAGGAAAATGTGTTTATAGTG
196 GATTTT-CATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAAAATGTGCTCATAGTG
* * * * * * *
943792 CCTAATCACAAAATGAATGAAGATCATTAATAGAATCCATGTTTGTCTCATTTGCGTCATGAATT
260 CCTAATCAAAAAATGAATGAAGGTCATTACTAGAATCCATGTTGGTCTCATTTGAGGCACGAATT
* * * * * *
943857 TAGACTTTACAATAACTGGTTGAAAGAAAGCCTTTCTTGCGACGCCAAAACATCAATATAATGTA
325 TAGACTTTGCAATAATTGGTTGAAAGAAAGTCTTTCTTGCGATGCCAAAACACCAATATATTGTA
* * * *
943922 TCCTTATGAGAAGACTATGTTTATGGTACCTAATCCTAAAAAGAATGGGGATTATTATGACTATT
390 CCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCAAAAAAGAATGGGGATTAGTATGACTATT
*
943987 CATGCTTT-TCTTATTTAAGAGAC
455 CAT-ATTTCTCTTATTTAAGAGAC
* * * *
944010 -AAACTTTGATTATTTCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATG
1 AAAACTTTGATTATATCAAAAACGGTGGAAGGAAAATCTTTTCTTGCGACACCAAAGCATCAATG
* * * *
944074 TCATGTATCTAAATATTGGGTATGTGTTCTTGGTTCCCATTCTTGAAAAGAATGGAGACT-ATCC
66 TCATGTATCTAAATAATGGGTATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTTC
* * * **
944138 TGAGAAACGATGCTTGTCATATTTAAGAGATGAATTTTGATTTTAAAGAAAATAAGATAAAGAAA
131 -GAGAATCGATGCTTGTCATATTTAAGAGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAA
* * * * * * *
944203 AGATTTTCATGCAAAAGAAAACCATCAATATCTTTTATCCCAATGAGGAGAATATGGTTATGGTG
195 AGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAAAATGTGCTCATAGTG
* ** * * * *
944268 CCTAATCACAAAATGAATGAAAATCATTTCTAGAGTCCATGTTTGCCTCATTTGAGGCACGAATT
260 CCTAATCAAAAAATGAATGAAGGTCATTACTAGAATCCATGTTGGTCTCATTTGAGGCACGAATT
** * *
944333 TATTCTTTGCAATAATTGGTTGAAAGAAAGCCTTTCTTGCGATGCCTAAACACCAATATATTGTA
325 TAGACTTTGCAATAATTGGTTGAAAGAAAGTCTTTCTTGCGATGCCAAAACACCAATATATTGTA
* * * * * *
944398 TCCTTATGAGATGACTTTGTTTATGGTCCCTAATCCTAAAAAGAATGGCGATTAGTATGACTATT
390 CCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCAAAAAAGAATGGGGATTAGTATGACTATT
* * * *
944463 CATGTTTTTCTTATTTAAAAGAT
455 CATATTTCTCTTATTTAAGAGAC
*
944486 AAAACTTTGATTATATCAAAAACGGTGGAAAGGAAAGT-TTTTCTTGCGACACCAAAGCATCAAT
1 AAAACTTTGATTATATCAAAAACGGTGG-AAGGAAAATCTTTTCTTGCGACACCAAAGCATCAAT
* * *
944550 GTTATGTATC-AAATAATGGGTATGTGTCCTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTT
65 GTCATGTATCTAAATAATGGGTATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTT
* * *
944614 C-AGGAATCGATACTTGTCATTTTTAAGAGATGAATCTTGATTTTAAGGAAAATAGGGCAAAGAA
130 CGA-GAATCGATGCTTGTCATATTTAAGAGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAA
*
944678 AAGATTTT-AGTGCAAAAGAAAACCATTAATATCATTTATCCTAATGA-GAAGAATGTGCTCATA
194 AAGATTTTCA-TGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAA-AATGTGCTCATA
* * *
944741 GTGCCTAATCAAAAAATGAATAAAGGTCATTACTAGAATCCATGTTGGTCTCATTCGAGGCACAA
257 GTGCCTAATCAAAAAATGAATGAAGGTCATTACTAGAATCCATGTTGGTCTCATTTGAGGCACGA
* *
944806 ATTTAGACATTGCAATAATAGGTTGAAAGAAAGTCTTTCTTGCGATGCCAAAACACCAATATATT
322 ATTTAGACTTTGCAATAATTGGTTGAAAGAAAGTCTTTCTTGCGATGCCAAAACACCAATATATT
* * *
944871 GTGCCATTACGAGAAGACTATGTTTATGGTGCCTAATCCAAAAAAGAATGGGGATTAGTATGACT
387 GTACCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCAAAAAAGAATGGGGATTAGTATGACT
944936 ATTCATATTTCTCTTATTTAAGAGAC
452 ATTCATATTTCTCTTATTTAAGAGAC
* * * * * *
944962 AAAACTTTGATTATATAAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACGAAAACATCAATG
1 AAAACTTTGATTATATCAAAAACGGTGGAAGGAAAATCTTTTCTTGCGACACCAAAGCATCAATG
* ** * **
945027 TCATGTATCTAAATGATGGAAATGTGTTCTTGGTTCCCGATCTTTTAAAGAATGGAGACTGTTTC
66 TCATGTATCTAAATAATGGGTATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTTC
**
945092 GAGAATTAATGCTT-TCATATTTAAGAGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
131 GAGAATCGATGCTTGTCATATTTAAGAGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
* *
945156 G-TTTTCCACG-AAAA-AAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGCTCATAGTG
196 GATTTT-CATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAAAATGTGCTCATAGTG
*
945218 CCTAATCAAAAAATGAATGAAGGTCATTACTAGAATCCATGTTGGTCTCATTTGAGGCACAAATT
260 CCTAATCAAAAAATGAATGAAGGTCATTACTAGAATCCATGTTGGTCTCATTTGAGGCACGAATT
*
945283 TAGACTTTGCAATAATTGGTTGAAAGAAAGTCTTTCTTGCGATGCCAAAACACCAATATATTGTG
325 TAGACTTTGCAATAATTGGTTGAAAGAAAGTCTTTCTTGCGATGCCAAAACACCAATATATTGTA
*
945348 CCCTTATGAAAAGA
390 CCCTTATGAGAAGA
945362 ATGGAGACTG
Statistics
Matches: 1610, Mismatches: 195, Indels: 48
0.87 0.11 0.03
Matches are distributed among these distances:
474 182 0.11
475 158 0.10
476 1072 0.67
477 190 0.12
478 8 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (477 bp):
AAAACTTTGATTATATCAAAAACGGTGGAAGGAAAATCTTTTCTTGCGACACCAAAGCATCAATG
TCATGTATCTAAATAATGGGTATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTTC
GAGAATCGATGCTTGTCATATTTAAGAGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
GATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAAAATGTGCTCATAGTGC
CTAATCAAAAAATGAATGAAGGTCATTACTAGAATCCATGTTGGTCTCATTTGAGGCACGAATTT
AGACTTTGCAATAATTGGTTGAAAGAAAGTCTTTCTTGCGATGCCAAAACACCAATATATTGTAC
CCTTATGAGAAGACTATGTTTATGGTGCCTAATCCAAAAAAGAATGGGGATTAGTATGACTATTC
ATATTTCTCTTATTTAAGAGAC
Found at i:947252 original size:950 final size:949
Alignment explanation
Indices: 945354--954559 Score: 9494
Period size: 950 Copynumber: 9.7 Consensus size: 949
945344 TGTGCCCTTA
** * * *
945354 TGAAAAGAATGGAGACTGTTTTGAGAAACGATGCTTGTCATATTTAAGAGTTGAATTTTGATTTT
1 TGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTT
* * * * * * *
945419 AAGAAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCTTCAATATCTTTTATCCCAAT
66 AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
* * * *
945484 GAGGAGAATATGTTTATAGTGCCTAATAACAAAATGAATGAAA-ATCGTTACTAGAGTCCATGTT
131 GAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT-AAAGATCATTACTAGAATCCATGTT
* * * * ** * * * *
945548 CGCCTAATTTGAGGCACGAATTTATTCTTTGCAATAATTGGTTGAAAGAAAGCCTTTCTTGCGAT
195 TGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTTGGAAGAAAGCCTTTCTTGC-AA
* * * * ** * *
945613 GCTAAAACACCAATATATTGTATCCTTATGAGATGACTATGTTTATGGTGCCTAATCTTGAAAAG
259 ACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAG
* *
945678 AATGGGGATTAGTATGACTATTCATGTTTCTCTTATTTAAGAGACAAAACTTTGATTATATCAAA
324 AATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGAC-AAACTTTGATTCTATCAAA
*** * * * * *
945743 AACGGTGGAAAGAAAAGCTTTTCTTGCGTCACCAAAGCATCAATGTCTTGTAT-CTAGGTGATGG
388 AATAATGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTA-ATGAAGG
*
945807 GAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTCCGAGAATCGATGCTTGTCAT
452 GAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCAT
** * * * *
945872 ATTTAAAAGTTGAATTTTGATTTTAAAGAAAATAGGGCAAAGAAAAGATTTTCATACAAAAGAAA
517 ATTTAATGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* * * * * *
945937 ACCATCAATATCATTTATCCTAATGTGGAGAATTTGTTTATAGTACCTAATCACAAAACGAATAA
582 ATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
* * * * * * * * *
946002 AGATCATTCCTAGAATCCCTGTTCGTCTCATTTGAGGCATGGACTTATACTTTACAATAGTTGGT
647 AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTAGT
* * * * * * * * *
946067 GGGAAGAAAGCTTTTGTTGCGAAATCAAAGCATCAATATCTTCTATCCTAATAAGAAGACTATGT
712 AGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGT
* *** * * * *
946132 TTATGGTG-CTAAT-TTTGAAAACTGTGGGGATTAGTACGACAATTCGTGTTTGTCCTATTTAAG
777 TTATGGTGCCTAATCCTT-AAAAGAAT-GGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
* * *
946195 AGACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAACCTTGTTTTGCGACACCATAGCATCA
840 AGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTT-TTTTGCGACACCAAAGCATCA
* * * *** * * *
946260 ACGT-ATGTGT-CTAACGAAATGAGTGTGTTCTTGTTTCCCAATCT
904 ATGTCATGTATCCTAATGATGGGAATATGTTCTTGGTTCCCAATCT
* * ** * * * * **
946304 TAAAAACAATTAAGACAGTTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACATTGATTTT
1 TGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTT
** * * *
946369 GTGGAAAA-AGGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATACCATTTATCCTAA
66 AAGGAAAATA-GGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAA
* * * * * *
946433 TGAGAAGAAAGTGTTTATAGTACCTAATCAGAAAATGAATAAAGATCAATACTAAAATCCATGTT
130 TGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATGTT
* * * * *
946498 TGCCTCATTTCAGGCATGAACTTACACTTTACAAAAATTGGTTTGAAGAAAGCCTTTCTTGCAAA
195 TGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTTGGAAGAAAGCCTTTCTTGCAAA
** * * * * ** *
946563 GCCAAAGCATCAATATCGTCAATCCTAATAAAAAAACTATGTTTATCATGTCTAATCCTGAAAAG
260 -CCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAG
* * * * *
946628 AATGGGGATTAGTATGACTATTCGTGTTTGCCTTATTTAAGTGACAAACTTTGACTCTATAAAAA
324 AATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAA
* * * * * * * *
946693 ATAATGCAAAGTAAACCTTTTCTTGTGACCCCATAGCATCAGTGTCATGGATCTTAATGAAGGGA
389 ATAATGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGA
* * * * * * *
946758 AGGTGTTCTTGGTTGCCAATCTTGAAAAGAATGGGGACTGTTACGGGAATCGGTGCTTGTCTTTT
454 ATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATAT
* *
946823 TTAGA-GGATGAAATTTGATTTTGAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
519 TTA-ATGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
*** *
946887 TCATTGGTATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCTTAATCACAAAATGAATGAA
583 TCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAA
* * *
946952 GATCGTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGCCTTTACAAAAATTAGCA
648 GATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTAGTA
* * *
947017 GGAAAAAAACCATTCTTGCGAAACCAAAGCATCAACATCGTGTATCCTTATGAGAAGACTATGTT
713 GGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTT
* *
947082 TATGGTGCCTAATCCTTAAAAGAATGCGGATTAGTATGGCTATTCATGTTTGTATTATTTAAGAG
778 TATGGTGCCTAATCCTTAAAAGAATG-GGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAG
* * *
947147 GCAAACTTTCATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTTTTCGACACCAAA-CATCAATG
842 ACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTTTGCGACACCAAAGCATCAATG
* * *
947211 TCGTGCATGCTAATGATGGGAATATGTTCTTGGTTCCCAATCT
907 TCATGTATCCTAATGATGGGAATATGTTCTTGGTTCCCAATCT
* *
947254 TAAAAAGAATAGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTT
1 TGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTT
* * * * *
947319 CAGGAAAATAGGGTAAAGAAAAGATTTTCATGAAAAAGAAAATCATCAATATCATTTATCCTATT
66 AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
* * * *
947384 GAGAAGAATGTGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCGTTACTAGAATCCATGTTT
131 GAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATGTTT
* * * * * * * *
947449 GTCTCATTTGAGGCCCGAACTTAAATTTTACAAAAAATAGTGGGAAGAAAGACTTTCCTGCGAAA
196 GTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTTGGAAGAAAGCCTTTCTTGC-AAA
* * * *
947514 CCAAAGCCTCAATATCGTGTATCCTTATGAGTAGACTATGTTTATGGTACCTAATCCTGAATAGA
260 CCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGA
** * * * *
947579 ATTTGGATTAGTATGGCTATTCATCTTTGTATTATTTAAGAGATAAACTTTGATTCTATCAAAAA
325 ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
* * * * * * **
947644 CAGA-GGAAAGAAAACCTTTTCGTGAGACAACAAAGCATCAATGTCGTGTAACC-AAACAATGGG
390 TA-ATGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAA-GGG
* * ** * *
947707 AATGTGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGATTGTTTTGAGGATCGATGTTTGTCATA
453 AATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATA
* * *
947772 TTCAA-GCGACGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAA
518 TTTAATG-GATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* * * *
947836 ATCATCAATGTCGTTTATCCTAGA-AAGGAGAATGTGTTTATAGCGCCTAA-CAACAAAATGAAT
582 ATCATCAATATCATTTATCCTA-ATGAGGAGAATGTGTTTATAGTGCCTAATC-ACAAAATGAAT
* * * * * * *
947899 GAAAATTATTGCTAGAATCCATGTTTGTCTCATTTTAGGCACAAACTTATACTGT-CGAAAAATT
645 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC-AAAAATT
* * * ** * * ** ** *
947963 GGTGGGAAGAAAGTTTTTCTTGTGAAACAAAAGTGTCAATATTATGTATCCTTATAAGAAGACTA
709 AGTAGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTA
* * ** * * *
948028 TATTTGTGGTGCCTAATCCGGAAAAGAATAGGA-TAGTATGACTATTTATGTTTGTCTTATTTTA
774 TGTTTATGGTGCCTAATCCTTAAAAGAATGGGATTAGTATGACTATTCATGTTTGTCTTATTTAA
** * ** * **
948092 GAGACAAAGATTGATTCTATAAAAAATAATGTAAAGAAAAGCATTCCTTGCGACACCAAAGCATC
839 GAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGC-TTTTTTGCGACACCAAAGCATC
** * * *
948157 AATAACATGTATCCAAATGATGGGAATGTGTACTTGGTTCCCAATCT
903 AATGTCATGTATCCTAATGATGGGAATATGTTCTTGGTTCCCAATCT
* * * * * *
948204 AGAAAAGAATGGAGGCTGTTACGAGAATCGAAGCTTGCCATATTTAAGGGATGAAGTTTGATTTC
1 TGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTT
* * * * *
948269 AAGGAAGATAGGGCAATGAAAAGATTTCCATGCAAAAAAAAATCATGAATACCATTTATCCTAAT
66 AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
* * *
948334 GAGAAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATAATTACTAGAATCCATGTTT
131 GAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATGTTT
** * * * * * * **
948399 GTCTCATTTGAGGCATAAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTTTTTACGATG
196 GTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTTGGAAGAAAGCCTTTCTTGC-AAA
** * * *
948464 CCAAAGCATCAATATAATGTATCCTTATGAGAAGACTATGCTTATGGTGCCTAATCATGAAAAAA
260 CCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGA
* * * * * *
948529 AT-AGGATTAGTATGACCATTCACGCTTGTCTTATTTAAGAGATAAAACTTTGATTCTAATGAAA
325 ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGA-CAAACTTTGATTCT-AT--CA
* * * * * *
948593 AAAATAATGGAAAGAGAAGCTTTTCTGGTGACACCAAAGCATCAATGTCGTGTATCCTAATGATG
386 AAAATAATGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAG
* ** * * * * * **
948658 GGATTCAGTTCTTAGTTCCTAATCTTGAAAACAATGGACACTGTTACGAG-ATCGATCCTTGTTT
451 GGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCA
* * * *
948722 TAATTAATGGATGAATTTTGATTTTATGGAAAATAAGGCAAAGGAAAGATTTCCATGCAAAAGAA
516 TATTTAATGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAA
* * * * * * *
948787 AATCATGACTATCATTTATCCTATTAAGGATAATGTGTTTGTAG-GCCTAATCACAAAATGATTG
581 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* * * * * * *
948851 AAGATCCTTACTAGAATTCGTGTTTGTCTTATTTGAGGCACAAACTTAGATTTTACAAAAAATAG
646 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTAG
* ** * * *
948916 -CGAGAGGAAAGCCTTTCCTGCGAAACCAAAACGTCAATATCGTGTATCCTTATGAGAAGACTAT
711 TAG-GAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTAT
* * * * * * * *
948980 GTTTATGGTACTTACTCCTGAATAGAATGTGGATTAGTATGGCTATTCATCTTTGTATTATTTAA
775 GTTTATGGTGCCTAATCCTTAAAAGAATG-GGATTAGTATGACTATTCATGTTTGTCTTATTTAA
** * * * *
949045 GAGACAAACTTTGATTCTATCAAAAACAGAGGAGATAAAACCTTTTCTTGCGACACCAAAGCATC
839 GAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTT-TTGCGACACCAAAGCATC
* * * * * * *
949110 AATGCCGTGTATCCAAATAATGGGAATGTGTTCTTGGTTCCTAATCC
903 AATGTCATGTATCCTAATGATGGGAATATGTTCTTGGTTCCCAATCT
* ** * * *
949157 TGAAAAGAATGGAGATTGTTTTGAGAATCGATGTTTGTCATATTCAAGGGGTGAATTTTGATTTT
1 TGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTT
* * * *
949222 AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAAAAAAATCATCAATGTCGTTTATCCTAG
66 AAGGAAAATAGGGCAAAGAAAAGATTTCCATGC-AAAAGAAAATCATCAATATCATTTATCCTAA
* * *
949287 TGAGGAGAATGTGTTTATAGCGCCTAA-CAACAAAATGAATGAAA-ATTATTGCTAGAATCCATG
130 TGAGGAGAATGTGTTTATAGTGCCTAATC-ACAAAATGAAT-AAAGATCATTACTAGAATCCATG
* * * * ** * *
949350 TTTGTCTCATTTTAGGCACGAACTTATAGTTTAGAAGTATTGGTGGGAAGAAAGCTTTTCTTGCT
193 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTTGGAAGAAAGCCTTTCTTGC-
* * * * *
949415 AAACAAAAAGCTTCAATGTCGTGTATCATTATGAGAAGACTATGTTTATAGTGCCTAATCCT-AA
257 AAAC-CAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
* * * * *
949479 AAGGAAT-GGGATTAGTATGACTATTCGTGTTTGTCTTATTTTAGAGACAAACATTAATCCTAT-
321 AA-GAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
* * ** *
949542 -AAAA-AACGGTAAGAAGAAAACCTTTCCTTGCGGGACCAAAGCATCAATGTCATGTATCCAAAT
385 AAAAATAATGG--A-AAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
* * * * * * * * *
949605 GATGGGAATATGTACTTAGTTCCCAATCTAGAAAAGAATGGAGGCTGTTACGAGAATCAAAGATT
447 GAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTT
* * * * *
949670 GCCATATTTAAGGGATGAATTTTGATTTCAAGGAAGATAGGGGAAAGAAAAGATTTCCATGCAAA
512 GTCATATTTAATGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAA
* * * *
949735 AGAAAATCATGAATATCATTTATCCTAATGAGGAAAATGTATTTATAATGCCTAATCACAAAATG
577 AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
* * * * * * *
949800 AATGAAGATCATTACTCGACTCCATGTTTATCTCATTTGAGGCATGAATTTAGACTTTGCAACAA
642 AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA
* * * * ** **
949865 TTGGT-TGAAAGAAAGCCTTTTTTACGATGCCAAAGCATCAATATAATGTATCCTTATGAGAAGA
707 TTAGTAGGAAA-AAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGA
* * * * *
949929 CTATGCTTATGGTGCCTAATCCTGAAAAGAATAGGATTAGTATGACTATTCACGCTTGTCTTATT
771 CTATGTTTATGGTGCCTAATCCTTAAAAGAATGGGATTAGTATGACTATTCATGTTTGTCTTATT
* * * * *
949994 TAAAAGATCAAACTTTGATTCTATCAAAAATAGTGGAAAGAGAAGCTTTTCTAGTGACACCAAAG
836 TAAGAGA-CAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTT-TTGCGACACCAAAG
* * *
950059 CATCAATGTCGTGTATCCTAATGATGGGATTCA-GTTCTTAG-TCCCTAATCT
899 CATCAATGTCATGTATCCTAATGATGGGAAT-ATGTTCTTGGTTCCC-AATCT
* * * *
950110 TGAAAACAATGGAGACTGTTACGAG-ATCGATGCTTGTCTTAATTAATGGATGAATTTTGATTTT
1 TGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTT
* * * * * * *
950174 ATGGAAATTAAGGCAAAGGAAAGATTTCCATGCAAAAGAAAATCATGAATAGCATTTATCCTATT
66 AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
* * * * * **
950239 AAGGATAATGTGTTTGTAG-GCCTAATCACAAAATGATTAAAGATCCTTACTAGAATCTGTGTTT
131 GAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATGTTT
* * * * * * * *
950303 GTCTTATTTGAGGCACAAACTTAGAGTTTACAAAAAATAG-CGAGAGGAAAGCCTTTCCTGCGAA
196 GTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTTG-GAAGAAAGCCTTTCTTGC-AA
* * * * * *
950367 ACCAAAACGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTACTTACTCCTGAATAG
259 ACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAG
* * * *
950432 AATGTGGATTAGTATGGCTATTCATCTTTGTATTATTTAAGAGACAAACTTTGATTCTATCAAAA
324 AATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAA
* * * * * *
950497 ACAGTGGAGATAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCAAAT-AATGGG
389 ATAATGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAA-GGG
* * ** * *
950561 AATGTGTTCTTGGTTCCCAATCCTGAAAAGAATGGAGATTGTTTTGAGAATCAATGTTTGTCATA
453 AATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATA
* * * *
950626 TTGAAGGGGTGAATTTTGATTTTAAGGAAAAAAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
518 TTTAATGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
* * * * * * *
950691 TCATCAATGTCGTTTATCCTAGTAAGGAGAAAGTGCTTATAGCGCCTAA-CAACAAAATGAATGA
583 TCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC-ACAAAATGAATGA
* * * * * * * *
950755 AAATTATTGCTAGAATCCATGTTTGTCTCATTAT-AGGCATGAACTTATAGTTT--AGAACTTA-
647 AGATCATTACTAGAATCCATGTTTGTCTCATT-TGAGGCACGAACTTAGACTTTACAAAAATTAG
* * *
950816 T--------AG----T-TT-AGAAA--AAAGCTTCAATATCGTGTATCATTATGAGAAGACTATG
711 TAGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATG
* * *
950865 TTTATAGTGCCTAATCC-TAAAAGGAATGGGATTAGTATGACTATTCGTGTTTGTCTTATTTTAG
776 TTTATGGTGCCTAATCCTTAAAA-GAATGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
* * * * * * * * *
950929 AGACAAACATTAATTCTATAAAAAACGGT-AAGAAGAAAACCTTTCCTTACGAGACCAAAGCATC
840 AGACAAACTTTGATTCTATCAAAAATGGTGGA-AAGAAAAGCTTT-TTTGCGACACCAAAGCATC
* *
950993 AATGTCATGTATCCAAATGATGGGAATATGTACTTGGTTCCCAATCT
903 AATGTCATGTATCCTAATGATGGGAATATGTTCTTGGTTCCCAATCT
* * ** * * * * *
951040 AGAAAAGAATGGAGGCTGTTACGAGAATTAAAGATTGCCATATTTAAGAGATGAATTTTGATTTC
1 TGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTT
* * *
951105 AAGGAAGATAGGGCAAAGAAAAGATTTCCTTGCAAAAGAAAATCATGAATATCATTTATCCTAAT
66 AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
* *
951170 GAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCGTTACTAGAATCCATGTTT
131 GAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATGTTT
* * * * * * * * * **
951235 GCCTCATTTGAGGCACAAATTTGGACTTTCCAATAATTGGTTGAAAGAAAACCTTTCTTACGATG
196 GTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTTGGAAGAAAGCCTTTCTTGC-AAA
** * * *
951300 CCAAAGCATCAATATAATGTATCCTTATGAAAAGACTATGCTTATGGTGCCTAATACTGAAAAGA
260 CCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGA
* * *
951365 AT-AGGATTAGTATGACTATTCATGCTTGTCTTATTTAAGAGACAAAGCCTTGATTCTATCAAAA
325 ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAA-CTTTGATTCTATCAAAA
* * * * * *** *
951429 ATGATGGAAAGAGAAGCTTTTTTTGTGACACCAAAGCATCAATGTTGCGTATCCTAATGATGGGA
389 ATAATGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGA
* ** * * * * *
951494 TTCAGTTCTTAGTTCCTAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGTCTTAA
454 ATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATAT
*
951559 TTAATGGATGAATTTTGATTTTAAGGAAAATAAGGG-AAAGAAAATATTTCCATGCAAAAGAAAA
519 TTAATGGATGAATTTTGATTTTAAGGAAAAT-AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
* * * * * *
951623 TCATGAATATCATTTATCCTATTAAGGATAATGTGTTTGTAG-GCCTAATCACAAAATGCAT-AT
583 TCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA-
* * * ** * *
951686 AGACCTTTACTAGAATCCATGTTTGTTTCATTTGAGGCACGATTTTAGACTTTATAAAAATTGGT
647 AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTAGT
* * * *
951751 AGGAAAAAAGCCTTTCATGCGAAACCAAAGCTTCAATATCGTCTATCCTAATGAGAAGACTATGT
712 AGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGT
** * *
951816 TTATGGCACCTAAT-C-TAGAACGGAATGTGGATTAGTATGACTATTCATGTTT-ACTTATTTAA
777 TTATGGTGCCTAATCCTTA-AA-AGAATG-GGATTAGTATGACTATTCATGTTTGTCTTATTTAA
* * * * * * *
951878 GAGATAAACTTTGACTCTATCAAAAACGGTGGAAAGAAAACCTCTTCTTGTGAAACCAAAGCATC
839 GAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCT-TTTTTGCGACACCAAAGCATC
* * *** *
951943 GATGTAATGTATCCTAATGAAAAGAATATGTTCTTGGTTCACAATCT
903 AATGTCATGTATCCTAATGATGGGAATATGTTCTTGGTTCCCAATCT
* **
951990 TGAAAGGAATGGAGACTACTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTT
1 TGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTT
* * * * * *
952055 CAA-GAAAATAGAGTAAAGAATAGAGTTCCATG-AAAAAAAAATCATCAATATCATTTATCCTAT
66 -AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAA
* * * * * *
952118 TGAGGAGAATATGCTTATAGTGCCTATTCACAAAATGAGTGAAGATCATTACTAGAATCTATGTT
130 TGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATGTT
* * * * *
952183 TGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAAATAGTAGGAAGAAAGCCTTTCCTAAGC-
195 TGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTTGGAAGAAAGCCTTT-CT-TGCA
* * ** * *
952247 AACCAAAGCGTCAATATCGTGTATACTTATGAGAAGACTATGTTTATCATACCTAATTCTGAAAA
258 AACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA
* * * * * *
952312 GAATGAGGATTAGTATAACTATTCATCTTTG-CGTTATTTAAGAAATAAACTTTAATTCTATCAA
323 GAATGGGGATTAGTATGACTATTCATGTTTGTC-TTATTTAAGAGACAAACTTTGATTCTATCAA
** * * * *
952376 AAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCAAATGATGG
387 AAATAATGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGG
* * *
952441 GAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGGCTGTT-TGAAGAATCGGA-GCTTTTC
452 GAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACG-AGAATC-GATGCTTGTC
*
952504 ATATTTAATGGATGAATTTTGATTTTAAGG---A-A--G-ATAG----G-------T-C-AAAGA
515 ATATTTAATGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
* * * * *
952549 AAATCATGAATATCATTTA-CCTATTGAGAAGAACGTGTTTATAGTACCTAATCACAAAATGAAT
580 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * * * * * *
952613 GAAGATCTTTACTAGAATCCATGTTTGTCTCTTTTGAGGCATGAATTTA-ATATTTGCAATAATT
645 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA-CTTTACAAAAATT
* * * * ** * *
952677 GGT-TGAAAGAAAGCCTTTCTTGCGAAGCCAAAGCACCAATATAATGTATCGTTATGAGATGACT
709 AGTAGGAAA-AAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACT
* *
952741 ATGTTTATGGTGCCTAAT-CTTGAAAAGAATGGGATTAGTATGACTGTTCGTGTTTGTCTTATTT
773 ATGTTTATGGTGCCTAATCCTT-AAAAGAATGGGATTAGTATGACTATTCATGTTTGTCTTATTT
* * ** *
952805 AAGAGACAAACTTTGATTCTATC-AAAATAGTGGAAAGAAAAGCTTTTCTT-AGACATTAAAGCT
837 AAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTT-TTGCGACACCAAAGCA
* ** **
952868 TTAATGTCATGTATCCTAATGAAT-GGAACCTGTTCTTGGTTCATAATCT
901 TCAATGTCATGTATCCTAATG-ATGGGAATATGTTCTTGGTTCCCAATCT
* * * * *** * * *
952917 TGAAAAGAATGGAGACTATTATGAGGAA-AGATACCAATTATATTTAAAGGATGAACTTTGATTT
1 TGAAAAGAATGGAGACTGTTACGA-GAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTT
* * * * * * *
952981 TAAGGAAAATAAGGCTAAGAAAAGTTTTCCATGCCAAAA-AAAATCTTTAGTATTATTTATCCTA
65 TAAGGAAAATAGGGCAAAGAAAAGATTTCCATG-CAAAAGAAAATCATCAATATCATTTATCCTA
* * ** *
953045 ATGAGGAGAATGTGTTTATTA-TGCCTAATTACAAAATGAATAACGATGTTTACTAGAATACATG
129 ATGAGGAGAATGTGTTTA-TAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATG
* * *
953109 TTTTTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTCGGAAGAAAGCCTTTCATCTG
193 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTTGGAAGAAAGCCTTTC-T-TG
* * * * * * * *
953174 -AAACCAAAGCATTAATATCATTTATCCTAATGTGAAAACTATATTTATGGTGCCTAATCTTGAA
256 CAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTG-A
* * * * *
953238 AAAAAATGGGGATTACTATGACTATTTCATATTTGTCTTATTTAATAGACAAAGTTTGATTCTA-
320 AAAGAATGGGGATTAGTATGACTA-TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * * * * **
953302 CAAAAAATGATGGAATGAAAATCTTTTCTTGTGACACCATAGCATCAACATCATGTATCCTAATG
384 C-AAAAATAATGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG
**
953367 AAGGGAAAATGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGA-TAGTTACGAGAATCGATGCTT
448 AAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACT-GTTACGAGAATCGATGCTT
* * * * * * * *
953431 GCCTTTTTTAA-GAGATGAATTTTGATTTTAAGGAAACTAAGGTAAAGAAAAGATTTTCATGTAA
512 GTCATATTTAATG-GATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAA
* * *
953495 AATAAAATCATCAATATCGTTTATCCTAATGTGGAGAATGTGTTTATAGTGCCTAATCACAAAAT
576 AAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAT
* *
953560 GAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAC-AAGCTTAGACTGTATAAA
641 GAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAA-CTTAGACTTTACAAA
* * * * *
953624 AA-TAGGTGGGAAGAAAGCCTTTCTTGTGGAACCAAAGCGTCAATATCGTGTATCCTTATGAGAA
705 AATTA-GTAGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAA
* * * *
953688 GACTATGTTTATCGTGCCTAATTCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGCCTT
769 GACTATGTTTATGGTGCCTAATCCTTAAAAGAAT-GGGATTAGTATGACTATTCATGTTTGTCTT
* * * *
953753 ATTTGAGAGACAAAACTTTAATTCTATCAAAAACGGTGGAGAGAAAAGCTTTTGTTGCGACACCA
833 ATTTAAGAGAC-AAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTT-TTGCGACACCA
* *
953818 AAGCATCAATGTCTTGTAT-CTAAATGATGGGAATGTGTTCTTGGTTCCCAATCT
896 AAGCATCAATGTCATGTATCCT-AATGATGGGAATATGTTCTTGGTTCCCAATCT
* * *
953872 TGAAAAGAATGGAGACTGTTCCGAGAATCGATGCTTGTCATATTTGAGAGATGAATTTTGATTTT
1 TGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTT
* * * *
953937 AAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAAG
66 AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
* *
954002 GAGGAGAATTTGTTTATAGTACCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATGTTT
131 GAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATGTTT
* * * * *
954067 GTCTCATTTGAAGCACGAATTTACACTTTACAAAAATTGGCTAGAAGAAAGCCTTTCTTGCGAAA
196 GTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTTGGAAGAAAGCCTTTCTTGC-AAA
* * * * * ** ** * *
954132 CCAAACCATCAATCTCTTCTATCCTAATGAGAAGACTATGTTTATGGTGGGTAATTTTCAAAACA
260 CCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGA
** * *
954197 ATGGGGATTAGTATGACTATTCGGGTTTGTCTTATTTAAGAGAGAAACTTTGATTCTATGAAAAA
325 ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
* * * * * * * *
954262 TAGTGGAAAAAAAACATTTTCTTGCGACACCATAGCATCAATGTCATATATCATAATGAAAGGAT
390 TAATGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAA
* * * ** *
954327 TGTGTTCTTGTTTCCCACTC-TCAAAAGGAATTAAGACTGTTACAAGAATCGATGCTTGTC----
455 TGTGTTCTTGGTTCCCAATCTTGAAAA-GAATGGAGACTGTTACGAGAATCGATGCTTGTCATAT
* ** * * * * *
954387 TTAAGGGATGAACATTAATTTTTCA-GAAAATAAGGTAAAGAAAAGATTTTCATGCAAAAGAAAA
519 TTAATGGATGAATTTTGA-TTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
* * * * * *
954451 CCATCAATATCCTTTATCGTAATGAGGAGAAAGTGTTTATAGTACCTAATCACAAAATGAATAAA
583 TCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAA
** * *
954516 GATCAAAACTAGAATCTATGTTTGTCTCATTTGAGGCACAAACT
648 GATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACT
954560 ATTGAAGAGA
Statistics
Matches: 6801, Mismatches: 1283, Indels: 345
0.81 0.15 0.04
Matches are distributed among these distances:
926 2 0.00
927 122 0.02
928 243 0.04
929 224 0.03
930 277 0.04
931 292 0.04
932 350 0.05
933 13 0.00
934 4 0.00
935 1 0.00
936 1 0.00
937 3 0.00
939 2 0.00
941 1 0.00
942 6 0.00
944 1 0.00
946 2 0.00
947 2 0.00
948 83 0.01
949 972 0.14
950 2079 0.31
951 469 0.07
952 363 0.05
953 695 0.10
954 209 0.03
955 385 0.06
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (949 bp):
TGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTT
AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
GAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATGTTT
GTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTTGGAAGAAAGCCTTTCTTGCAAAC
CAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAA
TGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAT
AATGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAT
GTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTT
AATGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCA
TCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGAT
CATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTAGTAGGA
AAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTAT
GGTGCCTAATCCTTAAAAGAATGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAA
ACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTTTGCGACACCAAAGCATCAATGTCAT
GTATCCTAATGATGGGAATATGTTCTTGGTTCCCAATCT
Found at i:950812 original size:14 final size:14
Alignment explanation
Indices: 950795--950825 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
950785 TTATAGGCAT
950795 GAACTTATAGTTTA
1 GAACTTATAGTTTA
950809 GAACTTATAGTTTA
1 GAACTTATAGTTTA
950823 GAA
1 GAA
950826 AAAAGCTTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.39, C:0.06, G:0.16, T:0.39
Consensus pattern (14 bp):
GAACTTATAGTTTA
Found at i:956015 original size:286 final size:286
Alignment explanation
Indices: 955503--956072 Score: 786
Period size: 286 Copynumber: 2.0 Consensus size: 286
955493 TGTCTCTTAA
* * *
955503 ATAAGACAAACACTAATAGTCATACTAATCTCTATTCTTTTCAGGATTAAGCACTATAAACATAG
1 ATAAGACAAACACTAATAGTCATACTAATCCCAATTCTTTTCAGGATTAAGCACCATAAACATAG
* * * *
955568 TCTTCTTATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTCTTCCTACTAAT
66 TCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTCTTCCCACAAAA
* * ** * *
955633 TTTTGTAAAGTCTAAGTTTGTGCCTTATATGAGACAAACATGGATTCTAGTAAGGATCTTCATTC
131 TTTTGTAAAGTATAAGTTCGTGCCCCAAATGAGACAAACATGGATTCTAGCAAGGATCTTCATTC
* * * *
955698 GTTTTGTGATTAGGCACTACAGACACATTCTCCTCAATAGGATAAATAATATTGATGATTTTCTT
196 ATTTTGTGATTAGGCACCACAAACACATTCTCCTCAATAGGATAAATAATATTGATGATGTTCTT
*
955763 TTGCAT-GAAAATCTTTTTTTTGCCCT
261 TTGCATAG-AAATCTTTTCTTTGCCCT
* * *
955789 ATAAGACAAATA-TGAATAGTTATACTAATCCCAATTCTTTTCAGGATTAGGCACCATAAACATA
1 ATAAGACAAACACT-AATAGTCATACTAATCCCAATTCTTTTCAGGATTAAGCACCATAAACATA
* * * *
955853 GTCTTGTCATAAGGATAGACGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAA
65 GTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTCTTCCCA-CAA
* *
955918 AATTTT-TAAAGTATAAGTTCGTGCCCCAAATGAGACAAATATGGATTCTAGCAATGATCTTCAT
129 AATTTTGTAAAGTATAAGTTCGTGCCCCAAATGAGACAAACATGGATTCTAGCAAGGATCTTCAT
* * * * * * *
955982 TCATTTTTTTATTAGGCTCCATAAACACATTCTCCTCATTAGGATAAATGATATTGGTGATGTTC
194 TCATTTTGTGATTAGGCACCACAAACACATTCTCCTCAATAGGATAAATAATATTGATGATGTTC
956047 TTTTGCATAGAAATCTTTTCTTTGCC
259 TTTTGCATAGAAATCTTTTCTTTGCC
956073 TATTTTCCTT
Statistics
Matches: 247, Mismatches: 34, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
285 1 0.00
286 238 0.96
287 8 0.03
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37
Consensus pattern (286 bp):
ATAAGACAAACACTAATAGTCATACTAATCCCAATTCTTTTCAGGATTAAGCACCATAAACATAG
TCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTCTTCCCACAAAA
TTTTGTAAAGTATAAGTTCGTGCCCCAAATGAGACAAACATGGATTCTAGCAAGGATCTTCATTC
ATTTTGTGATTAGGCACCACAAACACATTCTCCTCAATAGGATAAATAATATTGATGATGTTCTT
TTGCATAGAAATCTTTTCTTTGCCCT
Found at i:957831 original size:475 final size:476
Alignment explanation
Indices: 956730--991771 Score: 22536
Period size: 476 Copynumber: 73.1 Consensus size: 476
956720 CAAAGTTTGT
* * * * *
956730 CTAATCCCCATACTTTTCAGGATTAGCCACCATAAACATAGTCTTCTCATTAGGATAGATGATAT
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
* * *
956795 TGATGTTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAAATTTTGTAACA-TCTAAGTTCGTGC
66 TGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAA-AGTCTAAGTTCATGC
* * * **
956859 CTCAAATGAGACAAACATGGATTCTAGTAAAGATCCTT-ATTCATTTTATGATTAGGCATTGCAA
130 CTCAAATGAGACAAACATGGATTCTAGTAATGAT-CTTCATTCATTTTGTGATTAGGCACTATAA
* * * * * * * * * *
956923 ACTCATTCTCCTTAATATGATAAATGACATTCATGATTTTTTTTTTTTTGCATAGAAACCTCTTC
194 ACACATTCTCCTCATTAGGATAAATGATATTGATGA----TTTTCTTTTGCATGGAAATCTTTTC
* * * * * *
956988 TTCGCCCCATTTTCCTTAAAATAAAAATTCATCCTTTAAATATGACAAGCATTGTTTCTCGTAAC
255 TTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAAC
* * * * *
957053 GGTCTCCATTCTTTTCACGATTGGGAACTAAGAACACATTCCCTTCATTAAGATACATGACATTG
320 AGTCTCCATTCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTG
* * * * ** * **
957118 ATGATTTGGTGTCGCTAGAAAAGCCTTTATTTCCACCATTTTTAATAGAATCAAAGTTTGTCTAA
385 ATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCT
* * *
957183 AAAATAAGACAAACATTAATACTCATA
450 TAAATAAGACAAACATGAATAGTCATA
* * * * * ** *
957210 CAAATCTCCACTCTTTTCAGGATTAGGCACCATGAACATAGTCATCTCATTAA-GATTGATGATA
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGATA
* * * * * *
957274 TTGATGCATTGGTTTGC-TAGGAAAGGCTTTCTT-CTACCAATTTTTGTAAAGTATAAGTTCGTG
65 TTGATGCTTTGGTTT-CACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATG
* * *
957337 CTTCAAATGAGATAAACATGGATTCTAGTAA-GTATCCTT-ATTCATTTTGTGATTAGGCACTAC
129 CCTCAAATGAGACAAACATGGATTCTAGTAATG-AT-CTTCATTCATTTTGTGATTAGGCACTAT
* * *
957400 AAACACATTCTCCTTAATAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTT
192 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
* * * * *
957465 TACCCTATTTTCCTTAAAATTAAAATTCATCCCTTAAATATGACAAGCATCGTTTCTCATAAAAG
257 TGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAG
* * * * * * *
957530 TCTCCATTCCTTTCAGGATT-GGAACCAAGAACACACTCCTTTCCTTAGGATACAAGATATTAAT
322 TCTCCATTCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGAT
* ** * * * *
957594 GCTTTGGAGTCGCAAGAAAAGCTTTTCTTTCCTTTGCTTTTAATATAATCAAAGTTTGTCTCGTA
387 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTA
* *
957659 AAAAACACAAACATGAATAGTCATA
452 AATAAGACAAACATGAATAGTCATA
* * *
957684 CTAATCCCCATTATTTTCAGGATTAGGCACCCTAAACATAGTCTTCTTATAAGGATACACGATAT
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
* * * *
957749 TGACGCTTTGGTTTCATAAGAAAAGCTTTCTTCACACCAATTTTTGTAAAGTGC-AAGTTCATGC
66 TGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGT-CTAAGTTCATGC
* * *
957813 CTTAAATGAGACAAACATGGATTCTAGTAAGGA---TC-TTCATTTTGTGATTAGGCACTATAGA
130 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * ** *
957874 CACATTCTCCACAATAGGATAAATGATATAAATGATTTTCTTTTGCATGAAAATCTTTTCTTTGC
195 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
* * *
957939 CCTATTTTCTTTAAAATTAAAATTCATCCCTTAAATATGACAAGCAT-TATT-TCCTGTAACAGT
260 CCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCT-C-GTAACAGT
* ** * * *
958002 CTCCCTTTTTTTGACA-ATT-GGAACCAAGAACACATTCCCTTCCTTAGGATGCATGACATTGAT
323 CTCCATTCCTTTCA-AGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGAT
* * ** * * * **
958065 GCTATGGTGTCACAAG-AAAGCTTTTCTTTCCACCATTTGTGACAAAATCAAAGATTT-TCTCCG
387 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAG-TTTGTCTCTT
* *
958128 AAATAAAACAAACATGAATACTCATA
451 AAATAAGACAAACATGAATAGTCATA
* * *
958154 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAA-ATAGTCTTCTCATTAGGATAAAAGATAT
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
** * * *
958218 TGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCTACCAATTTTTGTAACGTCTAAGTTCATACC
66 TGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCC
* * * * * * * * * *
958283 TCGAATGAGACAAACATTGATTCTAGTAAGGATCCTCTTTTAATTTCTGATTAGACACTACAAAC
131 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAC
* * * ** *
958348 ACATTCTCCTCAATAGGATAAATGATATTGATAATTATCTTTTGTGTGAAAATCATTTT-TTTGC
196 ACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATC-TTTTCTTTGC
* * * * * *
958412 CCTGTTTTTCTTAAAATCAAAATTCATCCCTTAAATACGACATGCAT-TATTTCTCATAACAGTC
260 CCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGA-TTCTCGTAACAGTC
* * * * * * * *
958476 TCCATTCTTTTCACGATTGGGAACAAATAACACATTCTCGTCATTAAGATACATGATATTGATGC
324 TCCATTCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGC
**** * ** *
958541 TCCAATGTTGCAAGAAAAGGATTT-TTTCCACTGTTTGTGATAGAATCAAAGTTTGTCTCTTAAA
389 TTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* *
958605 TATGACAAACATGAATAGTCGTA
454 TAAGACAAACATGAATAGTCATA
* * * * ** * * *
958628 TTACTCCCAATTCTTTACAGGATTAGGCACCATAAATGTAGTCTTCTAATAAAGATACACAATAT
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
* * *
958693 TGATGCTTTGGTTTCGCAAGAAGGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGCTT-ATGC
66 TGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAG-TTCATGC
* * * * * * *
958757 ATTAAATGAGACAAACAAGGATTATAGTAAGGATCTTCATTCATTTTGTGATTAGGCAATACAAA
130 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * * * * * *
958822 CACATTTTCTTCAATAGGATAAATGATGTTGATAATTTTCTTTTGCGTGAAAATCTTTTCTTTGC
195 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
* * * * * * *
958887 CTTATTTTCCTTAAAATCAAAATTCATCCTTTCAATAAGACAAGTATCGATTCTCGTAATACTCT
260 CCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAGTCT
* * * * *
958952 CTATTCTTTTTAAGATTGGGAACCAAAAATACATTCCCTTCATTAGGATACATGACATTGATGCT
325 CCATTCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * ** * * * ** * *
959017 ATGGAGTCATAGGAAAAGGTTTTATTTCCACCATTTTTTATAGAATCAAAGTTTGTCTTTTAAAT
390 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
*
959082 AAGTCAAACATGAATAGTCATA
455 AAGACAAACATGAATAGTCATA
* * * ** * *
959104 CCAATCCCTATTCTCTTCTAGG-TTAGGCACCATAAACATAGTCTTCTTGTTAGGATAGACGATA
1 CTAATCCCCATTCTTTTC-AGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATA
** * * * *
959168 TTGATGCTTTGGTTTTGCAAGAAAAGCTTTCTTCCCACTAATTTTTGTAAAGTCTAGGTTCGTGC
65 TTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
* * * *
959233 CTCAAACGAGACAAACATGGATTCTAGTAATGATCTTCCTTCATTTTATGATTAGGTACTATAAA
130 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * * *
959298 CACATTTTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCCT-AAAATCTTTTCTTTGC
195 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
* * * ** * * *
959362 CCTATTTT-CTACAAAATCAAAATTCATCTCTTAAATAAGGTAATCA-CTGATTCCCGTAGCAGT
260 CCTATTTTCCT-TAAAATCAAAATTCATCCCTTAAATATGACAAGCATC-GATTCTCGTAACAGT
* * * * * * * * * * *
959425 CTCCATTCATTCCAAGACTAGGAGCCAAAAAGACATTCCTTTGATTAGGATACATGATATTGACG
323 CTCCATTCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATG
* * * ** * * *
959490 CTTTGGTGTCGCAGGAAAAGGTTTTCTTTCAACCATTTTTGATAGAATTAAAATTTGTC-CCTAA
388 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAA
** * *
959554 ATAAGTTAAACATGAATAGTTATG
453 ATAAGACAAACATGAATAGTCATA
* * * *
959578 CTAATCCCCATTCTTTTCAGGATTAGCCACCATAATCATAGTTTTCTTATAAGGATACACGATAT
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
** * * * * *
959643 TGACACTTTAGTTTTACAAGAAAGGCTTTCTTCCCACCAAATTTTATAAAGTCTAAGTTCATACC
66 TGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCC
* * *
959708 TCAAATGAGATAAACATGGATTCTAGTAATGATATTCATTCATTTTGTGATTAAGCACTATAAAC
131 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAC
* * * *
959773 ACATTCTCCTCATTAGGATAAATGATATTGATGA-TTTGTTTTCCATAGAAATCTTTTTTTTTTG
196 ACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATC--TTTTCTTTG
* * * * * * *
959837 CCTTATTTTCCTTAAAATAAAAATTCATCTCTTAAATAAGGCAAGCATTGATTCCCGTAACAGTC
259 CCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAGTC
* * * * * *
959902 TCCATTCTTTTCTAGATTGGGAACCAAGAATACA-CCCCTTTCCTTAGGATACATGACATTAATG
324 TCCATTCCTTTCAAGATTGGGAACCAAGAACACATTCCC-TTCATTAGGATACATGACATTGATG
* *
959966 CTTTGGTGTTCGCAAGAAAAGCTTTTATTTCCTCTGTTTTTGATAGAATCAAAGTTTGTCTCTTA
388 CTTTGGTG-TCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTA
*
960031 AATAAGCCAAACATGAATAGTCATA
452 AATAAGACAAACATGAATAGTCATA
* *
960056 CTAATCCCCATTCTTTTCAGGATTCA-GCACCATAAACATAGTCTTCTCATAAGGATATACAATA
1 CTAATCCCCATTCTTTTCAGGATT-AGGCACCATAAACATAGTCTTCTCATAAGGATACACGATA
** * * * *
960120 TTGATGCTTTGGTTTTGCAAGAAAAGCTTTCTTCCCCCCAAATTTTGTAAAGTCTAAGTTGATGC
65 TTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
* * * * * *
960185 CTCAAATAAGACGAACAAGGATTCTAGTAATGATTTTTA-TCTATTTTGTGTTTAGGCACTATAA
130 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTC-ATTTTGTGATTAGGCACTATAA
* * *
960249 ACACATTCTCCTCATTAGGATAAATGACATTGATGATTTTTTTTTTTGCATGGAAATCTTTTCCT
194 ACACATTCTCCTCATTAGGATAAATGATATTGATGA--TTTTCTTTTGCATGGAAATCTTTTCTT
* ** * * * *
960314 TGCCCTATTTTCCTTAGAATCAATGTTAATCCCATAAATAAGACAAGCATTGATTCTCGTAACTA
257 TGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAAC-A
* * *
960379 -TCTACA---C--TC----TT---AACCAATAACACATTCCAC-TCATTAGGATATATGACATTG
321 GTCTCCATTCCTTTCAAGATTGGGAACCAAGAACACATTCC-CTTCATTAGGATACATGACATTG
* ** * *
960430 ATGCTTTAGG-GTCGCAAGAAAAGGTTTTCTTTCCACCATTTTTCATAGAATCAAAGTTTGTGTC
385 ATGCTTT-GGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTC
* *
960494 TTAAATAAGAGAAACATGACTAGTCATA
449 TTAAATAAGACAAACATGAATAGTCATA
*
960522 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATAT
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
* ** ** * * *
960587 CGATGCTTTAATTTTGCATGAAAGGCTTTCTTCCCACCAAATTTTGTAAAGGCTAAGTTCATGCC
66 TGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCC
* * * * *
960652 TCAATTGAAACAAACATGAATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTACAAGC
131 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAC
* * * *
960717 ACATTCTCCTTATTAGAATAAATGATATTCATGATTTTTTTCTTTGCATGGAAATCTTTT-TTTC
196 ACATTCTCCTCATTAGGATAAATGATATTGATGA-TTTTCT-TTTGCATGGAAATCTTTTCTTT-
* * *
960781 GCCTTATTTTCCTTAAAATCAAAATTCATGCCTTAAATATGACAAGCATTGATTCTCGTAACAG-
258 GCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAGT
* * * * * *
960845 CATCCATTCTTTTCAAGATTAGGAACTAAGAATACATACCCTTAATTAGGATACATGACATTGAT
323 C-TCCATTCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGAT
* * * * * ** *
960910 GCTTTGGTGTCGCAATAAATGGTTTTCTTTTCACCAG-TTTTGATAGAATCAAAGTTTAACACTT
387 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA-CTGTTTTTGATAGAATCAAAGTTTGTCTCTT
*
960974 AAATAAGTA-AAACATGAATAGTCAAA
451 AAATAAG-ACAAACATGAATAGTCATA
* * * *
961000 ATAATCCCAATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAGACGATTA
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGA-TA
* ** * * * *
961065 TT-ATGCTTT-ATTGTTGCAAGAAAGGCTTT-TTCCCAACTAACTTTTGTAAATTTTAAGTTCAT
65 TTGATGCTTTGGTT-TCACAAGAAAGGCTTTCTTCCC-ACCAATTTTTGTAAAGTCTAAGTTCAT
* * * * * *
961127 GCCTTAAATGAGACAAACATGGATTTTAGTAGTCATCCTCATTCATTTTGTGATTAGGCA--AAA
128 GCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
** * * * * **
961190 AAGCATTTTCTCCTTAATAGGATAAATGATATCGAT-AGTTTTCTTTTGCCTTAAAATCTTTT-T
193 AA-CACATTCTCCTCATTAGGATAAATGATATTGATGA-TTTTCTTTTGCATGGAAATCTTTTCT
* * * * * * **
961253 TTGCCCTATTTTCGTTAAAAACAAAATTCATCGCTTAAAT-TAGGCAAGTATTGATTCTCGTAGT
256 TTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATAT-GACAAGCATCGATTCTCGTAAC
* * * * * * *
961317 AGTCTCCATT-CTTTAAAAGATTGGGAACCAAAAACACAATGCCTTAAATAGGATATATGACATT
320 AGTCTCCATTCCTTT-CAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATT
* * * * * * *
961381 GATGCATTGGTGTCGTAAGAAAAGGTTTTCTTTCCACCGTTTTTCATAGAATCAAAGTTTATCTT
384 GATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTC
*
961446 TTAAATAAGTCAAACATGAATAGTCATA
449 TTAAATAAGACAAACATGAATAGTCATA
* * * * *
961474 CTAATCCCCATTCTTTTCCA-GATTAGGCACTATAAACATAATCTTCTCATTAGGTTAGACGATA
1 CTAATCCCCATTCTTTT-CAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATA
* * * * *
961538 TTGATGCTTTGGTTTCATAAGAAAAGCTTTTTTCCCACCAATTTTTGTAAAGGCTAAGTTCGTGC
65 TTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
** * * * *
961603 CTCAAACAAGACAAACATGGATTTTAGTAATGATCTTTATTTATTTTGTGATTAGGTACTATAAA
130 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * * * **
961668 CACGTTCTCCTCATTACGATAAATGATATTGATGGTTTTCTTTTGCCTTAAAATCTTTTCTTTGC
195 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
* * ** * * * ** * * *
961733 CTTATTTTTCGCAAAATCAAAATTCAGCTCTTAAATAAGGTAAGCATTGATTCCCGTAATAGTCT
260 CCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAGTCT
* * * * *
961798 CCA-TCCTTTCAAGATTAGGAACCAAAAACACATTTCCTTGATTAGGATGCATGACATTGATGCT
325 CCATTCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * ** ** * * *
961862 TTGGTGTCGCAAGAAAAGGTTTTCTTTCTACCATTTTTGATTTAATCAAAGTTTATCACTAAAAT
390 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * *
961927 AAGACAAACATGAATATTTAAA
455 AAGACAAACATGAATAGTCATA
* * * *
961949 CTAATCCCCATTGTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGACACATGATAT
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
* * * * *
962014 TAATGCTTTGGTTTTACAAGAAAGGCTTTCTTCCAATCAATTTTTGTATAA-TCTAAGTTCGTGC
66 TGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTA-AAGTCTAAGTTCATGC
* * * * *
962078 TTCAAATGAGACAAATATGGATTCTAATATTGATCTTCATTCATTTTGTGATTAGGCACTATGAA
130 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
962143 CACATTCTCCTCATTAGGATAAATGATATTGATGATATTT-TTTTGCATGGAAATCTTTTCTTTG
195 CACATTCTCCTCATTAGGATAAATGATATTGATGAT-TTTCTTTTGCATGGAAATCTTTTCTTTG
* * *
962207 CCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATTGATTTTCGTAACAATC
259 CCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAGTC
* * * * *
962272 TCCATTCTTTTCAAGATTGGGAACCAAGAAGACACTT-CCTTGATTAGGATATATAACATTGATG
324 TCCATTCCTTTCAAGATTGGGAACCAAGAACACA-TTCCCTTCATTAGGATACATGACATTGATG
* * * ** *
962336 CTTTGGTGTTGTAAAAAAATG-TTTTCTTTGTA-TCGTTTTTGATAGAATCAAAGTTTGTCTCTA
388 CTTTGGTGTCGCAAGAAAA-GCTTTTCTTTCCACT-GTTTTTGATAGAATCAAAGTTTGTCTCTT
* *
962399 AAATATGATAAACATGAA-AGGTCATA
451 AAATAAGACAAACATGAATA-GTCATA
* * * * *
962425 ATAATCCCCATTGTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGACACACAATAT
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
** * ** * * ** *
962490 TGACACTCTGGTTTTGCAAGAAAGGCTTTCTTCCAACCAATTTTTGTATAGTCTAAGTTGGTGCT
66 TGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCC
* * * * * * *
962555 TCAAATGAGGCAAACATTGATTATAGTATTGATCTTCATTCATTTTGTGATTAAGTACTATGAAC
131 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAC
* *
962620 ACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTTTGCATGGAAATCTTTTTTTTG
196 ACATTCTCCTCATTAGGATAAATGATATTGATGA--TTTTCTTTTGCATGGAAATCTTTTCTTTG
* * * * * * * *
962685 CCCTATTTTCCTTAAAATCAAAATTGATCCATTAAATACGAAAAGAATCGATT-TGCATAAAAGC
259 CCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCT-CGTAACAGT
* * * * *
962749 CTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCACTTGATTGGGATACATGACATTGATG
323 CTCCATTCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATG
* * * * ** * *
962814 CTTTGATGTCGCAGGAAAAGGTTTTCTTTCAACCATTTTTTATAGAATCAAAGTTTGTCT-TGAA
388 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAA
* *
962878 ATAAGTCGAACATGAATAGTCATA
453 ATAAGACAAACATGAATAGTCATA
* * * * *
962902 CTAATCCTCATTCTCTTCAGGATTAGGCATCTTAAACATAGTCTTCTCATTAGGAT-CGACGATA
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATAC-ACGATA
* *** *** * *
962966 TTCATGCTTTGGTTTTGTAAGAAAGGCTTTC-TCCTGTTCAATTTTTGTAAAGTCCAAGTTCGTG
65 TTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCC-CACCAATTTTTGTAAAGTCTAAGTTCATG
* * * *
963030 CCTTAAATGAGACAAACATGGATTCTAGTAATCATCTTCGTTCATTTTGTGATTAGGCATTATAA
129 CCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
* * * * * *
963095 ACATA-TCTCCTCATTAGTATAAATGACACTGATGATTTCCTTTTGCTTGGAAATCTTTTCTTTG
194 ACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG
** * * * * * * *
963159 CCAAATTTTTTCATAAAATCAAAATTCATCTCC-TAAATTTGGCAAGCATTGATCCTCGTAACAA
259 CCCTA-TTTTCCTTAAAATCAAAATTCATC-CCTTAAATATGACAAGCATCGATTCTCGTAACAG
* * * * *
963223 TCTCCATTCTTTTCAAGATTGGGAACCAAGAATACTTTCCTTTCATTAGGATACATGACATTGAA
322 TCTCCATTCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGAT
* * ** * * *
963288 GCTTTGGTGTCACAAGAAAAGCTTTTCTCTT-AACCATTTCTGATAGAATCAACGTTTTTCTCTT
387 GCTTTGGTGTCGCAAGAAAAGCTTTTCT-TTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTT
* *
963352 AAATATGACAAACATGAATACTCATA
451 AAATAAGACAAACATGAATAGTCATA
* * * *
963378 CTAATCCCTATTCTTTTCAGGATTCGACACCATAAACATAGTCTTCGT-ATAAGAATACACGATA
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC-TCATAAGGATACACGATA
* * * * * *
963442 TTGATGCTTTAGTTTCATAAGAAATGATTTTTTCCCCCCAATTTTTGTAAAGTCTAAGTTCATGC
65 TTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
* * * * * *
963507 CTCAAATGAGACAAATATGGATTCTAATAATAATATTTATTCATTTAG-GATTAGGCACTATAAA
130 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * *
963571 CAGATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATAGAAAACTTTTCTTTGC
195 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
* * ** * * *
963636 CCTATTTTTCTTAAAATCAAAATTCATCCCTTAGATAAAACAAGCATCGATTCTCATAGCAGTTT
260 CCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAGTCT
* *
963701 CAATT-CTTTCCAAGATTGGGAAGCAA-AAGCACATTCCCTTCATTCA-GATACATGACATTGAT
325 CCATTCCTTT-CAAGATTGGGAACCAAGAA-CACATTCCCTTCATT-AGGATACATGACATTGAT
* * * * **
963763 GCTTTGGTGTTGCAAGAAAAGGTTTTCTATCCCCCATTTTTGATAGAATCAAAGTTTGTCTCTTA
387 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTA
* *
963828 AATAAGACAAACAT-AGATAATCACA
452 AATAAGACAAACATGA-ATAGTCATA
** * * * *
963853 CTAATCCTTATTCTTTTCAAGATTAGGCACCATAAACATGGTCTTCTTATAATGATACACGATAT
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
** *
963918 TGATGCTTTGGTGTT-GTAAGAAAGGCTTTCTTGCCACCAATTTTTGTAAAGTCTAAGTTCATGC
66 TGATGCTTTGGT-TTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
* ** * * *
963982 CTCAGATGAGACAAACATGGATTCTAGTGTTGATCTTCATTCATTTTGGGATTAAGCACAATAAA
130 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* ** * * *
964047 GACATTCTCCTTGTTAGGATAAATGATAGTGATGACTTTCTTTTGCATGGAAATCTTTTTTTTGC
195 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
* * * * **
964112 CCTACTTTCCTTAAAATAAAAATTCATCCCTTAAATATTATACTCATCGATTCTCGTAACAGTCT
260 CCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAGTCT
* ** * * * * *
964177 CTATTTTTTTCAAGATTAGGAACCAAAAACATATTCCCTTCA--AGTATACATGACATTGAAGCT
325 CCATTCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * ** * *
964240 TTGGTGTTAG-AA-AAGAAGCTTTTCTTTCAACTGTCCTTAATAGAATCAAAGTTTCTCTCTTAA
390 TTGGTG-TCGCAAGAA-AAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAA
*
964303 ATAAGACAAACATGAATA-CCAATA
453 ATAAGACAAACATGAATAGTC-ATA
* * * * * * *
964327 CTAATCCCCATTCTTTTCTGGATTTGGAACCATTAACATAGTCTTCTCATAAGGGTGCACGATGT
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
** * * * * *
964392 TGATGCTTTGGTTTTGCAGGAAAGGCTTTCTT-CCACTAATTTTTGTAAGGTCTAAGTTCGTGCA
66 TGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCC
* * * *
964456 TTAAATGAGACAAACAAGGATTCTAGTAATGA-CATTTATTGATTTTGTGATTAGGCACTATAAA
131 TCAAATGAGACAAACATGGATTCTAGTAATGATC-TTCATTCATTTTGTGATTAGGCACTATAAA
* * *
964520 CACATTCTCCTCCTTAGAATAAACGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
195 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
* ** *
964585 CTTATTTTCCTTAAAATCAAAATTCATCCCAAAAATATGACAAGAATCGATTCTCGTAACAGTCT
260 CCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAGTCT
* * * * *
964650 CCATTCTTTTCAAGATTGGGAACCAAGAATACATTCCTTTTATTAGGATACATGGCATTGATGCT
325 CCATTCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * **
964715 TTCGTGTCGTAAAGAAACG-TTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAA
390 TTGGTGTCG-CAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA
*
964779 TAAGACAAACATTAATAGTCATA
454 TAAGACAAACATGAATAGTCATA
* ** * * * * * * *
964802 TTAATCCCCATTCTTTTCAGCCTAAGGCACCATAAACATAGTATTGTCTTTAA-TATAGATGATA
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTC-ATAAGGATACACGATA
* * * * * * * * *
964866 CTAAAGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCC-CCAATTTTTGTCAAGTGTAAGTTTATAC
65 TTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
* * * * *
964930 CACAAACGAAACAAAC----A---T-G----GAT-TTCATTCAATCTGTGATTAGGCACTATAAA
130 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * * *
964982 AATATTCTCCTTATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTCC
195 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
* * * *
965047 CCTATTTTCCATAATATCAAAATTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTTT
260 CCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAGTCT
* * * * ** *
965112 CCATTCCTTTTAAGATTGGGAAGCAA-AAGCACAATCCCTTCATTACGATACCCGATATTGATGC
325 CCATTCCTTTCAAGATTGGGAACCAAGAA-CACATTCCCTTCATTAGGATACATGACATTGATGC
* * * * *
965176 TTTGGTGTCGTAAG-AAAGCTTTTCTTTCAACAGTTTTGGATAGAATCAAAATTTGTGC-CTTAA
389 TTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGT-CTCTTAA
* * *
965239 ATAAGACAAACATCAACACTCATA
453 ATAAGACAAACATGAATAGTCATA
* *
965263 CTAATCCCCATTCTTTTCTA-GATTAGGCACCAT-AACATATTCTTCTCATAAGGATACACGATG
1 CTAATCCCCATTCTTTTC-AGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATA
* * * *
965326 TTGATGGTTTGGTTTCGCAGGAAAAGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
65 TTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
* * * * *
965391 CTCAAATAAGACAAACGTGGATTCTAATACTGATTTTCATTCATTTTGTGATTAGGCACTATAAA
130 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * * *
965456 CACATTCTCCTCTTTAGAATAAATCATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTGC
195 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
* * * * *
965521 CCTATTTTCCTTAAAATCAAAATTCA-CCCTTAAAAATGGCAAGAATCTATTCTCGTAATAGTCT
260 CCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAGTCT
* * * * *
965585 CCATTCATTTTAAGATTGGGAACCAAGAATACATTCCCTTTATTAGGATACATGGCATTGATGCT
325 CCATTCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * * *
965650 TTCGTGCCGCAA-AGAAAGGTTTTCCTTCTACTGTTTTTTGATAGAATCAAAGTTTGTCTCTTAA
390 TTGGTGTCGCAAGA-AAAGCTTTTCTTTCCACTG-TTTTTGATAGAATCAAAGTTTGTCTCTTAA
* **
965714 ATAAGAAAAATGTGAATAGTCATA
453 ATAAGACAAACATGAATAGTCATA
* * * * ** * * ***
965738 CTAAT-CCAATTCTTCTCAGCATGAGGTGCCATAAACATAGTCTTGTCTTTAA-GATAGGTGATA
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTC-ATAAGGATACACGATA
* * * **
965801 TTGATGCATTGGTTT-ACAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTGTAAGTTTGTGC
65 TTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
* * * * * * * * *
965865 CACATATAAGACAAACATGGATTCTTGTAAGGAT-TTCATTGATTCTATCATTAGGCACTATAAA
130 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * *
965929 CATATTCTCCTCATTAGGATAAAAGATATTGATGATTTTCTTTTGCATGGAACTCTTTTCTTTGC
195 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
* * ** *
965994 CCTATTTTCCATAAAATCAAAATTTATCCCTTAAATAAAACAAGCATCGATTCTCGTAACAGTTT
260 CCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAGTCT
* * * * * * * *
966059 GCATTCCTTTCAAGATTAGGAAGCAA-AAGCACAATCCCTTCGTTACGATACCTGACATTGAAGC
325 CCATTCCTTTCAAGATTGGGAACCAAGAA-CACATTCCCTTCATTAGGATACATGACATTGATGC
* * * ** * * * *
966123 TTTGGTGTCACAA-AAAACCTTTTCTTTCAACCATTTTTTATAGAACCAAAGTTCGTGTCTTAAA
389 TTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* *
966187 TAAGACAAACATTAATACTCATA
454 TAAGACAAACATGAATAGTCATA
* * * * * * *
966210 CTAATCCTCATTCTTTTCTGGATTAGGCACCATAAACCTTG-CTTCTTATAAGGATACATGATGT
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
* * * ** * **
966274 TGATGTTTTGTTTTCAAAAGAACTGCTTTCTTCCCACCAATTTTTGTAATGTCTAAGTTTGTGCC
66 TGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCC
* * * * * *
966339 TTAAATAAGACAAACATTGATTCTAATAATGATCTTCATTCATTTTGTGACTAGCCACTATAAAC
131 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAC
* * * *
966404 ATATTCTCCTCATTAGGATGAATGATATTGCTGATTTTCTGTTGCATGGAAATCTTTTCTTTGCC
196 ACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
* **
966469 ATATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCG-ATACAACCT
261 CTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTA-ACAGTCT
* * * *
966533 CCATT-CTCATCAAGATTGGGAACCAAGAATACTTTCCCATCATTAGGATACATGACATTGATGC
325 CCATTCCT-TTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * *
966597 TTTGG-GAC-CATAAGAAAAGCTTTTC-TTCCAACCGCTTTTTTATTGAATCAAAGTTTGTCTCT
389 TTTGGTGTCGC--AAGAAAAGCTTTTCTTTCC-ACTG-TTTTTGATAGAATCAAAGTTTGTCTCT
* * *
966659 TAAATATGACAAACATTAATACTCATA
450 TAAATAAGACAAACATGAATAGTCATA
* * * * * * * *** * *
966686 CTAATCCCAATTCTTTACAGCATGAGGCACCATAAACATAGTCTTGTCTTTAGGATAGGTGAAAC
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
* * * ** *
966751 TGAAGCTTTGGTTTCGCAAGAAAGGCTTT-TTCCC-CTAATTTTTGTAAAGTGGAAGTTCATACC
66 TGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCC
* * * *
966814 ACAAATGAAACAAACATGGATTCTAGT-ATGGAT-TTCATTCATTCTATGATTAGGCACTATAAA
131 TCAAATGAGACAAACATGGATTCTAGTAAT-GATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * * * *
966877 AATATTCTCCTTATTAGGAAAAATGATATTGATGATTTT-TTTTACATGGAAATCTTTTCTTT-C
195 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
* * * * *
966940 CCTTATTTTCCATAAAATAAAAATTCATCTCTCAAATAAGACAAGCATC-ACTTCTCGTAACAGT
260 CC-TATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGA-TTCTCGTAACAGT
* * * * ** * *
967004 TTCCATTCCTTTCAGGATAGGGAAGCAA-AAGCACAAACCCTTCATTACGATACCTGACATTGAT
323 CTCCATTCCTTTCAAGATTGGGAACCAAGAA-CACATTCCCTTCATTAGGATACATGACATTGAT
* * * *
967068 GCTTTGGTGTCGCAAG-AAAGCTTTTCTTTCAACCGTTTTGGATAGAATCAAAGTTTGTGTCTTA
387 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTA
* * *
967132 AATATGACAAACATCAATACTCATA
452 AATAAGACAAACATGAATAGTCATA
* * * * *
967157 CTAATCCCCATTCTTTTCTA-CATTAGGCACGATAAACAAATTCTTCTCATAAGGATACACGATG
1 CTAATCCCCATTCTTTTC-AGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATA
* * * * * **
967221 TTGATGGTTTGGTTTCGCAAGAAAAGCTTTATTCCCACTAATTTTTGTAAAGTCTAAGTTTGTGC
65 TTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
* * *
967286 CTCAAAT-AGACAAACATGGATTCTAATAATGATTTTCATTCATTTTGTGATTAGGCACTACAAA
130 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * * *
967350 CACATTCTCTTCCA-TAGAATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTG
195 CACATTCTCCT-CATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG
* *
967414 CCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCTATTCTCGTAACAATC
259 CCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAGTC
* * * * * * * * *
967479 TCCAATCATTTTAAGTTTGGGAACCAAGAATACATTCCCTTTATTAAGATACATGGCGA-GGATG
324 TCCATTCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGAC-ATTGATG
* * * * *
967543 CTTTCGTGTCGCAA-AGAAAGGTTTTCCTTCTACTGTTTTTGATTGAATCAAAGTTTGTCTCTTA
388 CTTTGGTGTCGCAAGA-AAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTA
* *
967607 AGTAAGACAAACGTGAATAGTCATA
452 AATAAGACAAACATGAATAGTCATA
* * * * * * * * ***
967632 CTAATCCCCATTCTTCTCAGCATGAGGCGCCATAGACATAGTCTTGTCTTTAGGATAGGTGATAT
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
* * * * *
967697 TGATGCATTT-GTTTCAGAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTGTAAGTTCGTAC
66 TGATGC-TTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
* * * * * * * *
967761 CACATATAAGACAAACATGGATTCTTGTAAGGAT-TTCATTGATTCTATGATTAGGCACTATAAA
130 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * * *
967825 CATATTCTCCTCATTAGAATAAAAGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTAGC
195 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
* * * * * *
967890 CCCATTTTCCATAAAATCAAAATTCATCCCATAAATAAGACAAGC-CCTGATTCTCGTAACAGTT
260 CCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATC-GATTCTCGTAACAGTC
* * * * * * *
967954 TGCATTCCTTTCAAGATTGGGAAGCAA-AAGCACAATCCCTTCGTTACGATACCTGACATTGAAG
324 TCCATTCCTTTCAAGATTGGGAACCAAGAA-CACATTCCCTTCATTAGGATACATGACATTGATG
* * * * * * *
968018 CTTTGGTGTCACGAG-AAAGCTTTTCTTT-CAATCATTTTTGATTGAATCAAAGTTCGTGTCTTA
388 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACT-GTTTTTGATAGAATCAAAGTTTGTCTCTTA
* * *
968081 AATAAGACAAACATCAATACTCAGA
452 AATAAGACAAACATGAATAGTCATA
* * * * * *
968106 CTAATCCCCATTCTTTTCTGGATTAGGCATCATAAACCTTGTCTTCTTATAAGGATACACGATGT
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
* * * *
968171 TGATGTTTTGATTTCAAAAGAACGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCC
66 TGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCC
* * * *
968236 TCAAATAAGACAACCATGGATTCTAATAATGATCTTCATTCATTTTGTGATTAGGGACTATAAAC
131 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAC
* *
968301 ACATTCTCCTCATTAGGATAAATGACATTGATGATTTTCTGTTGCATGGAAATCTTTTCTTTGCC
196 ACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
* *
968366 CTATTTTCCTTAAAATCAAAATCCATCCCTTAAATATGACAAGCATCGATTCTCG-AGACAGCCT
261 CTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTA-ACAGTCT
* * **
968430 CCATT-CTCATCAAGATTGGGAACCAAGAATAGTTTCCCCTT-ATTAGGATACATGACATTGATG
325 CCATTCCT-TTCAAGATTGGGAACCAAGAACACATT-CCCTTCATTAGGATACATGACATTGATG
* * * ** * * *
968493 CTTTGGGGTCACAAGAAAAGCTTTT-TTTCAACCATTTTTTATTGAATCAAAGTTTGTCTTTTAA
388 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAA
* * *
968557 ATATGGCAAACATGAATACTCATA
453 ATAAGACAAACATGAATAGTCATA
* * * *
968581 CTAATCCCCATTCTTTTCAAGATTAGGTACCATAAACATAGTCTTCTCTTAAGGATACACAATAT
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
* * * * *
968646 TGATGCTTTGGTTTCATAAGAAAGGCTTTCTTCCC-CCTAATTTTTCTAACGTATAAGTTCGTGC
66 TGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACC-AATTTTTGTAAAGTCTAAGTTCATGC
* ** * *
968710 CTCAAATAAGACAAACATGGATTCTAGTAATGATCTTTGTTCATTTTGTGATTAGACA-GATAAA
130 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * * * *
968774 TA-GTTCTACTCGTTAGGATAAATGGTATTGATGATTTTCTTTTGCAT-GAAAT-TTTTCTTTGC
195 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
* * * * * **
968836 CCTATTTTCCTGAAAATCAAAATTCGTCTCTTAAATAAGACGAGCATCGATTCTCGTAACAACCT
260 CCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAGTCT
* * ** ** ** ** **
968901 CCATTCTTTTCTAGATTGGGAACTGTA-AACAC-TTCATTTTGTCCGGGCCA-ATTTTCGACAAT
325 CCATTCCTTTCAAGATTGGGAAC-CAAGAACACATTCCCTTCAT-TAGG--ATA-CAT-GAC-A-
* * * * *** * * * **** ** ** ** *
968963 TTGAAGTCTAGCTAGTAGGT-GGAAGATTCGACGTATGTGGGGAC-GAATTCAATTTTAAGTCCA
382 TTGATG-CT--TTGGT--GTCGCAAGAAAAG-CTTTTCTTTCCACTGTTTTTGA-TAGAA-TCAA
* * * * * ** *
969026 A-TATTG-CTGGCCTTGAATCAG-CATA-TTGGCATCTTCAATT
439 AGT-TTGTCT---CTTAAATAAGACAAACAT-GAATAGTC-ATA
* * * * * *
969066 TTAAGT-CCAATGTAGCTGGCCTTGAATCAGCACATT-GGCACCTTTAAGTCCAATA-TC-GCTG
1 CTAA-TCCCCAT-T--CT----TT---TCAG--GATTAGGCACC-ATAA--AC-ATAGTCTTCT-
* * * * * * ** **
969127 GCCT-TGAAT-CA-GCATATTGGCAT-CTTCAT-CTTTAAGTCCAATG-TA-GCTGGCCTTGAAT
48 -CATAAGGATACACG-ATATT-G-ATGCTT--TGGTTTCA---CAA-GAAAGGCT-TTCTT--CC
* ** ** * * * ** * * *
969185 CAGCACA---TTGGCACCTTTAAGTCCAAT--ATC-GCTG-G-C---C-TTGAATC-AGCATATT
100 CACCA-ATTTTTGTAAAGTCTAAGTTC-ATGCCTCAAATGAGACAAACATGGATTCTAG--TAAT
* *
969237 AGCATCTTCA-TC-TTTATGTCCAATGTA-GCTAGCCT-TGAATCAGCACATTGGCACCT--TTA
161 -G-ATCTTCATTCATTT-TGT--GAT-TAGGC-A--CTAT-AA--A-CACATT--CTCCTCATTA
* * * ** *** ** * * * *
969296 AG-TCCAAT-ATCGTTG--GCCTTGAATCAGCATATTGG-CACCTTCATCTTTAAGTCCAATATC
211 GGAT-AAATGAT-ATTGATGATTTTCTTTTGC--A-TGGAAATCTT-TTCTTT--G-CC-CTAT-
** * * * * * * ** *
969356 GCTAGCCTT-GAATCAACATATTGGCA--CCTTCAACTTTAAGTCCAATGTAGTTG-GCCTTG-A
265 --TTTCCTTAAAATCAA-A-ATT--CATCCCTT-AA--ATATG-ACAA-GCA-TCGATTCTCGTA
**
969416 ATCAG-CAT--ATTGGCACCTTT-AAGTCCAATATAGTTGG--CCTTGAATCAGCATATTGGCAC
318 A-CAGTC-TCCATT----CCTTTCAAG----AT-T-G--GGAACCAAGAA-CA-C--ATT--C-C
* * * * ** * *
969475 CTTTTCCATCTTTAAG-TTCAATG---TTGCTGGCCTT-GAATCAGCACATTG-ACATC-TTT-T
362 C--TT-CA---TTAGGATAC-ATGACATTGAT-GCTTTGGTGTC-GCA-A--GAAAAGCTTTTCT
* ** *** ** * * * * * ***
969532 TTCTCA-TCTTTAAG-CCCAAT-ATCG-TTGGC-CGTGAATCA-ACATATTGGCATCTTTA-TCA
415 TTC-CACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA-A---ACATGAATAGTCA
969590 CTTTCA
475 ---T-A
* * * * * * *
969596 TCTTTAAGT-CCAATGTCGCTGGCCTTGAATCAGCACATT-GGCACCTTCATCTTTA-ACATTC-
1 -C--TAA-TCCCCAT-T--CT----TT---TCAG--GATTAGGCACCATAAAC-ATAGTC-TTCT
* * * * * * ** * ** * * *
969657 C-T---TA-ACCCAATGTTGTTGGCCTT-GAATCAGC-ATATTGACATTT-TT--C-TC-A-TCT
48 CATAAGGATACACGATATTGAT-GCTTTGGTTTCA-CAAGAAAGGC-TTTCTTCCCACCAATTTT
* * * ** * ** * **
969709 T-T-AAGTCTAA-TGTCGCTGACCGTGAATAGCGCATTGACATCCTTTTTCTCATCTTTGAACCC
110 TGTAAAGTCTAAGT-TC-ATG-CC-TCAA-A-TG-A--GACAAAC---AT-GGAT-TCT--A-GT
* ** ** * * * * * * * *** *
969771 AAT-ATTGTTGGCCATGAATCAATGT-ATTAGTC-TTTTTATCACTCTTCATCCTCATCATCTTT
158 AATGA-TCTT---CATTCAT-TTTGTGATTAGGCACTATAAACAC-ATTC-TCCTCATTAGGATA
* * ** *** * * * * ** *
969833 AA-GTTCAGTGTGGCAGGCCTTGAATCTGAACAGTGG-CA-CATTACACTGACCATATTCTTCC-
216 AATGAT-A-T-T-G-ATGATTTTCTTTTG--CA-TGGAAATCTTTTCTTTG-CCCTATT-TTCCT
** ** * * * * * * **
969894 -AAAATC--CCTTCCAAACGTTACGCCA-AT--CTA-CA-CG--TATC-TAAGGAG-GT-CAAGC
271 TAAAATCAAAATT-CATCCCTTA---AATATGACAAGCATCGATTCTCGTAA-CAGTCTCCATTC
** * *** ** ** * *** ** ** * **
969946 CTTAGAAAATTTCAAAACCTAGTAGGGAGGACAAACCCTACA--AACTTATTTTTCCATCGAAAC
331 CTTTCAAGA-TTGGGAACC-A--A--GAACACATTCCCTTCATTAGGATA-CATGACATTGATGC
* * * * * * ***** * * **
970009 -----TGCCGCCA-ATAGGCTCTTC-AT-CAC-GGCGAAGCATTA-ATCACCCAAAGGTCATAAC
389 TTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTG-A-TAGA--A-TCAAA-GT-TTGTC
***** * *
970064 ATGCGGCCGT-GGACAAA-ATG-GT-GTC-TA
447 -T-CTTAAATAAGACAAACATGAATAGTCATA
* ** ** * ** * * * *
970091 -T-TTGTCTTTGGCTTGTTCCTGATACTCAGAAACGGCCA-AAGAGGGGCAGCTGTAGAC-ACTT
1 CTAATCCCCAT-TCTT-TTCAGGAT--T-AG--GC-ACCATAA-A----CA----TAGTCTTC-T
*** * * * * ** * *
970152 CATTTTG-TCCGGGCCAATTTTCGATAATTTGAAGTCT-AGCTAGTAGGTGAAAGATTCGACGTA
48 CATAAGGATAC---ACGATATT-GATGCTTTG--GTTTCA-C-A--A---GAAAG----G-C-TT
* **** * * * ** * * *
970215 TGTGGGGACGAATTCAATTT-T-AAGTCCAATATTGC-TGGCCTTGAATCAG-CATA-TTGGCAT
94 TCTTCCCACCAATT---TTTGTAAAGTCTAA-GTT-CAT-GCCTCAAATGAGACAAACATGG-A-
* * * * * ** ** * * * *
970275 CTTCAATTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATT-GGCACCTTTAAGTC-CAATA
151 -TTC-----T-AGT--AATG-ATCT-TCATTCATTTTG-TGATTAGGCA-CTATAA-ACACATTC
* * * * * **
970338 TCGCTGGCCTT-GAAT-CA-GCATATTG--GCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTT
202 TC-CT--CATTAGGATAAATG-ATATTGATG-AT-TT--TCTTT---TGC-ATGGAAAT---CTT
*** ** * ** * * * * * * *
970398 GAATCAGCAC-ATTGGCACCTTTAAGTC-CAATATCGCTGGCCTTGAATCA-GCATATTAGCATC
252 TTCTTTGCCCTATT--TTCCTTAAAATCAAAAT-TC-AT-CCCTTAAAT-ATG-ACA--AGCATC
* * * * ** * * * ** ** * *
970460 --TTCATCTTTA-AG--TCCAAT-ATAGCTAGCCTT--GAATC-AG--CACATTGGCACCTTTAA
308 GATTC-TCGTAACAGTCTCCATTCCTTTCAAG-ATTGGGAACCAAGAACACATTCCCTTCATTAG
* * * * * ** * ** * * * * *
970514 G-TCCA--ATATCGCTGGCCTT-GAATCAGTATATTG-GCACCTTCATCTTTAAGTCCAATATCG
371 GATACATGACATTGAT-GCTTTGGTGTC-GCA-A--GAAAAGCTT-TTC-TT---TCCACTGT-T
* * * * * * * ** * * *
970574 CTGGCCTTGAATCAGTA-TATTGGCACCTTCATCTTTAAGTC-CA-ATG--TAG-C-TGGC
425 TTTG-ATAGAATCA-AAGT-TTGTC-TCTT-A--AATAAGACAAACATGAATAGTCAT--A
** ** *** * * * * * *
970628 CTTGAATCAGCA--CATTGGCACCTTTAAGTC-CAATATAGC-TGGCCTTGAATCAGTATAATGG
1 C-T-AATCCCCATTC-TTTTCAGGATT-AGGCACCATA-AACATAGTCTT--CTC---ATAA-GG
* ** * * * * *** ** * ** * * ** *
970689 TTTTTTA-GATTTTTATAACTTTTTGTTAGGCTCG-AA-TCCATC-TCCCATC-GTCCCTAGTCG
55 --ATACACGATATTGAT-GC-TTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAAT-TTTTGT--
** * * ** * * ** * * *
970749 AGATAGGGT--GTTTCGAAGGCAAAAAGGATGA-AAAAATTACATTTTTGTCCAAATGTATC--G
113 A-A-AGTCTAAG-TTC-ATGCCTCAAATGA-GACAAACA-TGGATTCTAGT---AATG-ATCTTC
* * * * * * * *
970809 ATACATCGTT-AGA--ATGTATCGAT--ACA-AGGTC-CCAACGATTA--A-AAATTTTGA-ATT
168 ATTCAT-TTTGTGATTAGGCA-CTATAAACACA-TTCTCC-TC-ATTAGGATAAA---TGATA-T
* * ** * * ** * * * ** * *
970863 TCAATGATTTGTATCGATACAT--AAAGTGTTGTATCGAT--ACAATGTATCGAT-ACAT-AAGT
224 T-GATGATTT-TCT-TTTGCATGGAAA-TCTT-T-TCTTTGCCCTAT-TTTCCTTAAAATCAA-A
* * ** * ** * * * * *
970922 GTTGTAT-CGATACAAT-T--TAAGC-T--ATTGC-CAAAAAATGTATCGATACATTACTCAA-A
281 ATT-CATCCCTTA-AATATGACAAGCATCGATT-CTCGTAACA-GTCTCCATTCCTT--TCAAGA
* * * * * * ** ***
970978 -T--GTATC--G-ATACATT---GT-A-T-CGATACACTGATCTTTGTAT-CGAT-ACAT-GC-A
340 TTGGGAACCAAGAACACATTCCCTTCATTAGGATACA-TGA-CATTG-ATGCTTTGGTGTCGCAA
* * * * * * * * * *
971027 GACAAA--TTTGC---CCAGATG-TATTGATACACTAT-AAA--ATGTATCAATACATGCAGGCA
402 GA-AAAGCTTTTCTTTCCA-CTGTTTTTGATAGA--ATCAAAGTTTGTCTC-TTAAAT-AAGACA
***
971083 AA-ATTGCCCAG--AT-
461 AACA-TGAATAGTCATA
* *** ** * * * * * * * *
971096 GT-ATCGATACACTATT-A-AATGTA-TCGATACATGCAGACA-A--CTTTTCAT-A--TTTCGA
1 CTAATCCCCATTCTTTTCAGGAT-TAGGC-A-CCAT--AAACATAGTCTTCTCATAAGGATAC-A
* ** ** * ** * *
971151 -GACT-TT--TTC-TTCCTTTGC-CAA-ACAA-G-TTT-TTTGCATC-A--TAAGT--GGTC-AG
60 CGA-TATTGATGCTTTGGTTT-CACAAGA-AAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAA
* * ** * * * ** * * *
971200 GATTCATG--TCAAAT-A-TCAATTGC-TACATGCCA-AAACACATTTTGA-TCACTTT-TGA--
122 G-TTCATGCCTCAAATGAGACAA--ACATGGATTCTAGTAA-TGATCTTCATTCATTTTGTGATT
* * * * * *
971255 A-G--CTA-AAAGCAAGGCATTGAATGCCAAAACCATGT-GG-TCCAA-GTTCATTGGCTCTCAA
183 AGGCACTATAAA-C-A--CATT--CT-CC----TCAT-TAGGAT-AAATGAT-ATT-G--AT-GA
** **** * * * ** * * *
971313 GGCTTCCAAGGC-TGCCAAACCTTATCTCCAGCCACCCTATCTTCTCCCT--GATC---TTTGCC
230 -TTTTCTTTTGCATG-GAAATCTTTTCT-TTG---CCCTAT-TT-TCCTTAAAATCAAAATT--C
* * * * * * * * ** * *
971372 AGCTGCTATAGGCAATGAT-ATC-AGC--CCA-CCTAGCTAGCTAGCTTTTCATTTAGTGGT-GA
285 ATC-CCT-TA---AAT-ATGA-CAAGCATCGATTCTCG-TAAC-AG-TCTCCA-TTCCT-TTCAA
* * * * * * ** * ** ** *
971431 GAGT-GAAATGTCTTAAGCACCCTCACTTGATCACC-ACAAATCTAGCCTATAAAAGGTTG--GA
338 GATTGGGAA---C-CAAG-A---ACACAT--TC-CCTTC--AT-TAGGATACATGACATTGATGC
** * ** * *** ** *
971492 TTTATTCTCAGCAA-AGGAGGTTTTGCTGAGCA-T-TTTTCTCCAGCAACTTCTACCTCCCACAA
389 TTTGGTGTC-GCAAGAAAAGCTTTT-CTTTCCACTGTTTT-T---G--A--TAGA-AT----CAA
*** * ** * * * *
971554 ACACT-TCTC-CATTTGAGA-AAACA-CAA-ATTCCTGGA
439 AGTTTGTCTCTTAAATAAGACAAACATGAATAGTCAT--A
** *** * * * * * **
971589 GCTCTTCCTTCC-TTCCCCTCA--A-TA-CCATCACTCAAACA-ACTCATTTTCAGCT-TGTTTA
1 -CTAATCC--CCATTCTTTTCAGGATTAGGCACCA-T-AAACATAGTC-TTCTCA--TAAGGATA
*** ** * ** ** * *
971647 CAACCCCAAAGAAG----GGTTAAACAAG--TTGCTTGGGCACTCCAAACCAGCAAATCAGCATA
58 C-ACGATATTGATGCTTTGGTTTCACAAGAAAGGCTT----TCTTC---CCA-C----CA--AT-
*** * ** * ** **** **
971706 GTGGTTTGTTTGGTATATTTTTC-TGCACT---TTGACCCTTTTAT-TTTTCT-GCTTATAT-AT
107 -T--TTTGTAAAGTCTA-AGTTCATGC-CTCAAATGAGACAAACATGGATTCTAG--TA-ATGAT
* ** * * * *
971764 -TATCA-TCATTTTAGTGATCCTA-AC-CTAT-TTC-CATGAC-CTTC-CTAGGAT-CAT-A-A-
164 CT-TCATTCATTTT-GTGAT--TAGGCACTATAAACACAT-TCTCCTCATTAGGATAAATGATAT
* * * * *** ** *
971817 TGCATGATTGTGGC-TTTGGATGTGGTAGT-TTTAGGAT-TATTGTGATGATTTTGATGATTTGA
224 TG-ATGATT-T-TCTTTTGCA--TGGAAATCTTT----TCT-TTGCCCT-A-TTT--T-CCTTAA
* * ** * * * * *
971879 AGTC--ACTTGTGTGCC-TAAA-ATGCCATATCCATC--TCCATCATGTTAACAG-C-CCA-T-G
274 AATCAAAATT-CATCCCTTAAATATGACA-A-GCATCGATTC-TC--G-TAACAGTCTCCATTCC
* * ** * * ** ** ** * * *
971934 ATTCATGCATTTTGAACTATGTTTCATGCATTTACAACATGTTCAGCACCTCCATGA-A-TGTTG
332 TTTCAAG-ATTGGGAACCAAG-AACA--CATTCCCTTCA--TT-AGGA--TACATGACATTGATG
** * * * *
971997 -TTCATCATGTTCTTGCATGAGCAATCAA-TTTTTCCTATCAAAATGCATGCTTATTTGCCTTA-
388 CTT--TGGTG-TC--GCA--AG-AA--AAGCTTTT-CTTTC--CA--C-TG-TT-TTTG--ATAG
* * *** * * *
972059 AAGCAAA--TT-T-TC--AAACACCCCCAA-GT-TA-AGTTCA-A
433 AATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAG-TCATA
* ** * ** * *** * * *
972094 GCT-AGCCTTAATC-AATGAGGATTA-GCTTGGAT--TCA-AG-CTTTTTATCAA--ATTGACAC
1 -CTAATCCCCATTCTTTTCAGGATTAGGC-ACCATAAACATAGTCTTCTCAT-AAGGA-T-ACAC
* ** *** ** **** *** **
972150 --T-TTAAT-C-TTGGGGT-A-AATTTAGTTTTTCAGGTCTGGAA-TCATGATTAAA-TC-AAGT
61 GATATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTG--TAAAGTCTAAGT
* *** * * * * * * * * **
972205 CCAAAACTCTAATTTTTGA-ACCAAA-ATGGCCTTCCA-TCAT-TTGTGCTTTGGTTTGGTGTCA
124 TCATGCCTC-AA---ATGAGA-CAAACATGG-ATTCTAGTAATGATCTTCATTCATTT--TGT--
* * * * * * * * ** **** ** *
972266 AACTTGAGTGGTATTGATCAACGGGCTGTTTCATCGTCCCA-AACTACTCCGGGGCAGTGCAAAT
179 GA-TT-A--GGCACT-ATAAAC--AC--ATTC-TC--CTCATTAGGA-TAAATGATATTG---AT
* ** *** * * ** * * * *
972330 GA-GTTCGTGATGCTCATACCACTCTCTTCTTTCAGTCACGGACGTTCGGATGTCCAT-GACTCG
228 GATTTTC-TTTTG--CATGGAAATCTTTTCTTT--G-C-CCTA--TT----T-TCCTTAAAATCA
** * * * * * * * ** * * * * **
972393 AGTTTAAATCCGTAAACACGTAGGA-AACCA-AGA-TC-AGTCCCTGTTTTGCC-CT-GTTTCCT
279 AAATT-CATCCCTTAA-A--TATGACAAGCATCGATTCTCGTAACAG-TCT-CCATTCCTTTCAA
* * * * * * * ** * * ** * *
972452 G-CT-GG---C-AGCAACAC--T-GCTGCA-TATTGAAAAATCATTTTAAAATACTAAACGATTT
338 GATTGGGAACCAAG-AACACATTCCCTTCATTA-GGATACATGACATT--GATGCT--TTGGTGT
** * *** * * * ***
972507 TTC--TAAAA--TTTT-TTT--A--GTATTTT--T-CCCTTAAAG--TGTGTC-AAAATATCTTT
397 CGCAAGAAAAGCTTTTCTTTCCACTGT-TTTTGATAGAATCAAAGTTTGTCTCTTAAATA--AGA
* *
972557 CCAAC--G-AT-GTCTTA
459 CAAACATGAATAGTCATA
** * * * * **
972571 -TTTTCCCC-TGGATC-TGTCCGAATGAGGGAGACAAGATTTTTCAAACCCA-AG-CTATC-CAG
1 CTAATCCCCAT---TCTTTTCAGGATTA--G-G-CACCA----T-AAA--CATAGTCT-TCTC--
* * * * * * *
972630 AATCCCTAGG-TTCAACCGA-A-TGCATTCTGTTTGGGCCGTTCAGGCCTAGCAGACGGTTTTCC
49 -AT---AAGGATAC-A-CGATATTG-ATGC--TTT-GG--TTTCA---CAAG-A-AAGGCTTT--
*** * * * *** * *
972692 CAAATATTCCTTTC-ATTTTTCCTAAAAAGATCATGAAATTACCTTTTTGAAAAG-GTATCGTTT
95 C-----TTCCCACCAATTTTT-GT--AAAG-TC-T-AAGTT-CATGCCTCAAATGAG-A-C----
* * *** *
972755 GTAATTTTCTTATACGAAACGAGTCT-GGGGTGATTTTTCAAAGGTTGACACACCTTTT-TCAGC
142 --AA---AC--AT--G----GATTCTAGTAATGA-TCTTC--A--TT----CA--TTTTGT--G-
* * ** * * * * ** ** ** *
972818 A-TACGCCCTACCAGCA-ATGCAATTCACCCTA-CTTTGAGGATTTATTCCACCAGGAAAATGAT
180 ATTAGGCACTATAAACACATTC--TCCTCATTAGGATAAATGA-T-ATT-------G---ATGAT
* * * *
972880 ATTGATGATTTT-CTTTCTGTGAAAATCTTTTCTTTTG-TCTATTTCCCTTAAAATCAAAATTCA
231 -TT--T-CTTTTGC---ATG-G-AAATCTTTTC-TTTGCCCTATTTTCCTTAAAATCAAAATTCA
* * * * * * * * * **
972943 TCCATTAAATACGGCAAGCATCGATTCTCATAAGAGTCTCCCTT-TTTTCTGAGATTAGGAATTA
286 TCCCTTAAATATGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTC-AAGATTGGGAACCA
* * * * *
973007 AGAACACATTCCCTTCATTAGAATACATAACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCT
350 AGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
* * * * *
973072 TTCCACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAATAGTCATA
415 TTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATA
* * * * * *
973134 CAAATCCCCATTCATTCCGGGATTAGGCACCATAAACATAGTCTTCTCACT-AGGATACAAGGTA
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGATA
* ** * **
973198 TTGACGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAACATTTGTAAAGTCTAAGTTCATGC
65 TTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
* * *
973263 CTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAA
130 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * * *
973328 CACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTCGTTTGCATGGAAAT-TTCTTTTTTG
195 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTT-TTCTTTG
* * * * * ***
973392 CCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCAATTCTTGTTTTAGTC
259 CCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAGTC
* * * ** * * *
973457 TCTATTCTTTTCGAGATTTAGAACCAAGAACACATTCCATTCATTAGGATACATTACATTGATTC
324 TCCATTCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * ** * ** *
973522 TTTGGTTTCGCAAGAAAAGGTTTTCTTTTTGCACCATTTTCGATAGAATCAAAGTTCCTCTTTTA
389 TTTGGTGTCGCAAGAAAAGCTTTTC--TTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTA
* * * *
973587 ATTAAGACAAATATCAATAGTCTTA
452 AATAAGACAAACATGAATAGTCATA
* * * *
973612 -TGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGT-GGGACAGACGA
1 CT-AATCCCCA-TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGA
** * ** * *
973675 TATTGATGCTTTAATATT-GCAAGAAAGGCTTTCTTTCCC-CCAATTTTTACAAACTGTAAGTTC
63 TATTGATGCTTTGGT-TTCACAAGAAAGGCTTTC-TTCCCACCAATTTTTGTAAAGTCTAAGTTC
* * *
973738 ATG-CTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTA
126 ATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTA
* * ** * * * *
973802 TAAACACAATCTCCTTACAAGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCT
191 TAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCT
** * * * * * * *
973867 TTGGTCTATTTCCCTTAAAATCAAAATTCATGCATTAAATACGGCAAGCATCGATTCTCATAAGA
256 TTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACA
* ** ** ** ** * *
973932 GTCTCCCTTTTTTTTGAGATTATGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGT
321 GTCTCCATTCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGA
* * * * ** * *
973997 TGTTTTGGTGTCACAAGAAAAGCTTTCCTTTGCACCATTTTTTATATAATCAAAGTTTGTCTCTT
386 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTT
* * * *
974062 AAATAACACAAACTTAAACAGTCATA
451 AAATAAGACAAACATGAATAGTCATA
* * * * *
974088 CAAATCCCCATTCATTTCGGGATTAGGCACCATAAACATAGTCTTCTCACTAA-GATACAAGGTA
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGATA
* * * * * *
974152 TTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCAAGCAACTTTTGTCAAGTCTAAGTTCATGC
65 TTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
* * *
974217 CTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAA
130 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * * *
974282 CACATTTTCCGCATTAGGATAAATTATATTGATGATTTT-TGCTTT-CATTGAAAT-TTCCTT-T
195 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCT--TTTGCATGGAAATCTT--TTCT
* * * * * * * ***
974343 TTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTAAAATATAACAACCATCGATTCTTGTTTTA
256 TTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACA
* * * * * **
974408 GTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTCAA
321 GTCTCCATTCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGA
* * * **
974473 TGCTTTGGTTTCGCAAGAATAGGTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTCCTCTCTT
386 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTT
* *
974538 AATTAAGACAAACATGAATAGTCTTA
451 AAATAAGACAAACATGAATAGTCATA
* * * *
974564 CGAATCCCCATTTTGTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGT-AGGACAGACGA
1 CTAATCCCCA--TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGA
** * ** * *
974628 TATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTCCC-CCAATTTTTACAAACTGTAAGTTCA
63 TATTGATGCTTTGGTTTCACAAGAAAGGCTTTC-TTCCCACCAATTTTTGTAAAGTCTAAGTTCA
* * *
974692 TG-CTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
127 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* *** * * * *
974756 AAACACAATCTCCTTGCTAGGACAAATGATATTGATGATTTTCTTTTCCGTGCAAATCTTTTCTT
192 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
*** * * * * * *
974821 TGGTTTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGGCAAGCATCGATTCTCATAAGAG
257 TGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAG
* ** ** * ** * *
974886 TCTCCCTTTTTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTT
322 TCTCCATTCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGAT
* *
974951 GTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCA-TCGCTTTTT-ATAGAATCAAAGTTTGTCTCT
387 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACT-G-TTTTTGATAGAATCAAAGTTTGTCTCT
* * *
975014 TAAATAACACAAACTTAAATAGTCATA
450 TAAATAAGACAAACATGAATAGTCATA
* * * * * *
975041 CAAATCCCTATTCATTTCAGGATTACGCACCATAAACATAGTCTTCTCACT-AGGATACAAGGTA
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGATA
* ** * * *
975105 TTGACGCTTTGGTTTCGTAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGC
65 TTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
** * *
975170 CTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAA
130 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * *
975235 CACTTTCTCCGCATTAGGATAAATGATATTGATGATTTT-TGCTTGCATGGAAAT-TTCCTT-TT
195 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCT-TTTGCATGGAAATCTT--TTCTT
* * * * * ***
975297 TCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTTTAG
257 TGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAG
* * * * *
975362 TCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTTGAT
322 TCTCCATTCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGAT
* * * * **
975427 GCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTCTTA
387 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTA
* *
975492 ATTAAGACAAACATGAATAGTCTTA
452 AATAAGACAAACATGAATAGTCATA
* * * *
975517 CGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGT-AGGACAGACGAT
1 CTAATCCCCA-TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGAT
** * * * * *
975581 ATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTCCC-CTAATTTTTGCAAACTGTAAGTTCAT
64 ATTGATGCTTTGGTTTCACAAGAAAGGCTTTC-TTCCCACCAATTTTTGTAAAGTCTAAGTTCAT
* * *
975645 G-CTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
128 GCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* * * * * * *
975709 AACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGCAAATCTTTTCTTT
193 AACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTT
*** * * * * * *
975774 GGTTTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGGCAAGCATCGATTCTCATAAGAGT
258 GCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAGT
* ** ** * ** * *
975839 CTCCCTTTTTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTG
323 CTCCATTCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATG
* * *
975904 TTTTGGTGTCACAAGAAAAGCTTTTCTTTCCA-TCGTTTTTTATAGAATCAAAGTTTGTCTCTTA
388 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACT-GTTTTTGATAGAATCAAAGTTTGTCTCTTA
* * *
975968 AATAACACAAACTTAAATAGTCATA
452 AATAAGACAAACATGAATAGTCATA
* * * * * *
975993 CAAATCCCTATTCATTTCAGGATTACGCACCATAAACATAGTCTTCTCACT-AGGATACAAGGTA
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGATA
* * * * *
976057 TTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGC
65 TTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
** * *
976122 CTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAA
130 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * *
976187 CACTTTCTCCGCATTAGGATAAATGATATTGATGATTTT-TGCTTGCATGGAAAT-TTCCTT-TT
195 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCT-TTTGCATGGAAATCTT--TTCTT
* * * * * ***
976249 TCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTTTAG
257 TGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAG
* * * * *
976314 TCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTTGAT
322 TCTCCATTCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGAT
* * * * **
976379 GCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTCTTA
387 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTA
*
976444 ATTAAGACAAACATGAATAGTCATA
452 AATAAGACAAACATGAATAGTCATA
* * * *
976469 CGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGT-AGGACAGACGAT
1 CTAATCCCCA-TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGAT
** * * * * *
976533 ATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTCCC-CTAATTTTTGCAAACTGTAAGTTCAT
64 ATTGATGCTTTGGTTTCACAAGAAAGGCTTTC-TTCCCACCAATTTTTGTAAAGTCTAAGTTCAT
* * *
976597 G-CTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
128 GCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* * * * * * *
976661 AACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTT
193 AACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTT
** * * * * * *
976726 GGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGACAAGCATAGATTCTCATAAGAGT
258 GCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAGT
* * ** * ** * * *
976791 CTCCCTGT-TTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATACTTGACATTGTT
323 CTCCAT-TCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGAT
* * ** *
976855 GTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTA
387 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTA
* * *
976920 AATAACACAAACTTAAATAGTCATA
452 AATAAGACAAACATGAATAGTCATA
* * * * * *
976945 CAAATCCCCATTCATTTCATGATTACGCACCATAAACATAGTCTTCTCACT-AGGATACAAGGTA
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGATA
* * * * *
977009 TTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGC
65 TTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
** * *
977074 CTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAA
130 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * *
977139 CACTTTCTCCGCATTAGGATAAATGATATTGATGATTTT-TGCTTGCATGGAAAT-TTCCTT-TT
195 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCT-TTTGCATGGAAATCTT--TTCTT
* * * * * ***
977201 TCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTTTAG
257 TGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAG
* * * * *
977266 TCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTTGAT
322 TCTCCATTCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGAT
* * * * ** *
977331 GCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTTTTA
387 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTA
* *
977396 ATTAAGACAAACATGAATAGTCTTA
452 AATAAGACAAACATGAATAGTCATA
* * * * *
977421 CGAATCCCCATTTTTTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCAGT-AGGACAGACGA
1 CTAATCCCCA--TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGA
** * * * * *
977485 TATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTCCC-CTAATTTTTGCAAACTGTAAGTTCA
63 TATTGATGCTTTGGTTTCACAAGAAAGGCTTTC-TTCCCACCAATTTTTGTAAAGTCTAAGTTCA
* * *
977549 TG-CTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
127 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* * * * * * *
977613 AAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGCAAATCTTTTCTT
192 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
*** * * * * * * *
977678 TGGTTTATTTCCCTTAAAATAAAAATTCATCCATTAAATACGGCAAGCATCGATTCTCATAAGAG
257 TGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAG
* ** ** * ** * *
977743 TCTCCCTTTTTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTT
322 TCTCCATTCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGAT
* * *
977808 GTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCA-TCGTTTTTTATAGAATCAAAGTTTGTCTCTT
387 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACT-GTTTTTGATAGAATCAAAGTTTGTCTCTT
* * *
977872 AAATAACACAAACTTAAATAGTCATA
451 AAATAAGACAAACATGAATAGTCATA
* * * * * *
977898 CAAATCCCTATTCATTTCAGGATTAAGCACCATAAACATAGTCTTCTCACT-AGGATACAAGGTA
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGATA
* * * * *
977962 TTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGC
65 TTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
** * *
978027 CTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAA
130 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * *
978092 CACTTTCTCCGCATTAGGATAAATGATATTGATGATTTT-TGCTTGCATGGAAAT-TTCCTT-TT
195 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCT-TTTGCATGGAAATCTT--TTCTT
* * * * * ***
978154 TCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTTTAG
257 TGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAG
* * * * *
978219 TCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTTGAT
322 TCTCCATTCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGAT
* * * * **
978284 GCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTCTTA
387 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTA
* *
978349 ATTAAGACAAACATGAATAGTCTTA
452 AATAAGACAAACATGAATAGTCATA
* * * *
978374 CGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGT-AGGACAGACGAT
1 CTAATCCCCA-TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGAT
** * * * * *
978438 ATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTCCC-CTAATTTTTGCAAACTGTAAGTTCAT
64 ATTGATGCTTTGGTTTCACAAGAAAGGCTTTC-TTCCCACCAATTTTTGTAAAGTCTAAGTTCAT
* * *
978502 G-CTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
128 GCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* * * * * * *
978566 AACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTT
193 AACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTT
** * * * * ** *
978631 GGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGACAAGCATAGATTCTCAAAAGAGT
258 GCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAGT
* * ** * ** * * *
978696 CTCCCTGT-TTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATACTTGACATTGTT
323 CTCCAT-TCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGAT
* * ** *
978760 GTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTA
387 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTA
* * *
978825 AATAACACAAACTTAAATAGTCATA
452 AATAAGACAAACATGAATAGTCATA
* * * * * *
978850 CAAATCCCCATTCATTTCATGATTACGCACCATAAACATAGTCTTCTCACT-AGGATACAAGGTA
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGATA
* * * * *
978914 TTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGC
65 TTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
** * *
978979 CTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAA
130 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * *
979044 CACTTTCTCCGCATTAGGATAAATGATATTGATGATTTT-TGCTTGCATGGAAAT-TTCCTT-TT
195 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCT-TTTGCATGGAAATCTT--TTCTT
* * * * * ***
979106 TCCCCTATTTTTC-TCAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTTTAG
257 TGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAG
* * * * *
979170 TCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTTGAT
322 TCTCCATTCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGAT
* * * * ** *
979235 GCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCG-TTTCGATAGAATCAAAGTTCCTCTTTTA
387 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTA
* *
979299 ATTAAGACAAACATGAATAGTCTTA
452 AATAAGACAAACATGAATAGTCATA
* * * * *
979324 CGAATCCCCATTTTTTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCAGT-AGGACAGACGA
1 CTAATCCCCA--TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGA
** * ** * *
979388 TATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTCCC-CCAATTTTTACAAACTGTAAGTTCA
63 TATTGATGCTTTGGTTTCACAAGAAAGGCTTTC-TTCCCACCAATTTTTGTAAAGTCTAAGTTCA
* * *
979452 TG-CTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
127 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* * * * * * *
979516 AAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTT
192 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
** * * * * *
979581 TGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGACAAGCATCGATTCTCATAAGAG
257 TGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAG
* * ** * ** * * *
979646 TCTCCCTGT-TTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATACTTGACATTGT
322 TCTCCAT-TCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGA
* * ** *
979710 TGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTT
386 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTT
* * *
979775 AAATAACACAAACTTAAATAGTCATA
451 AAATAAGACAAACATGAATAGTCATA
* * * * * *
979801 CGAATCCCCATTCATTTCACGATTACGCACCATAAACATAGTCTTCTCACT-AGGATACAAGGTA
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGATA
* * * * *
979865 TTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGC
65 TTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
** * *
979930 CTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAA
130 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * * *
979995 CACTTTCTCCGCATTAGGATAAATGATATTGATGATTTT-TGCTTGCATGGAAAT-TTCTTTTTT
195 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCT-TTTGCATGGAAATCTT-TTCTTT
* * * * ***
980058 G-CCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTTTAGT
258 GCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAGT
* * * * * *
980122 CTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCATTCATTAGGATACATTACATTGATG
323 CTCCATTCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATG
* * ** * **
980187 CTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTCCTCTCTTAA
388 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAA
* * * *
980252 TTAAGACAAATATCAATAGTCTTA
453 ATAAGACAAACATGAATAGTCATA
* * * * * *
980276 CGAATCCCCATTTTTTTTCAGGATTCGGCACCATAAACATAGTCTTCTCAGT-GGGACAGACGAT
1 CTAATCCCCA-TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGAT
** * ** * * *
980340 ATTGATGCTTTAATATT-GCAAGAAAGGCTTTCTTTCCC-CCAATTTTTACAAACTGTTAGTTCA
64 ATTGATGCTTTGGT-TTCACAAGAAAGGCTTTC-TTCCCACCAATTTTTGTAAAGTCTAAGTTCA
* * * *
980403 TG-CTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGCACTAT
127 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* * * * * * *
980467 AAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTT
192 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
** * * * * * * *
980532 TGGTCTATTTCCCTTAAAATCAAAATTCATGCATTAAATACGGCAAGCATCGATTCTCATAAGAG
257 TGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAG
* ** ** * ** * *
980597 TCTCCCTTTTTTTTTAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTT
322 TCTCCATTCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGAT
* * * * ** * *
980662 GTTTTGGTGTCACAAGAAAAGCTTTCCTTTGCACCATTTTTTATATAATCAAAGTTTGTCTCTTA
387 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTA
* * * *
980727 AATAACACAAACTTAAACAGTCATA
452 AATAAGACAAACATGAATAGTCATA
* * * * * *
980752 CAAATCCCCATTCATTTCGGGATTAGGCACCATAAACATAGTATTCTCACTAA-GATACAAGGTA
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGATA
* * * * *
980816 TTGATGCTTTGGTTTCTCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATCC
65 TTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
* * *
980881 CTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAA
130 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * * * *
980946 CACATTTTCCGCATTAGGATAAATTATATTGATGATTTT-TGCTTGCATTGAAAT-TTCCTT-TT
195 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCT-TTTGCATGGAAATCTT--TTCTT
* * * * * ***
981008 TCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTTTAG
257 TGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAG
* * * * *
981073 TCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTTGAT
322 TCTCCATTCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGAT
* * * * ** *
981138 GCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTTTTA
387 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTA
* *
981203 ATTAAGACAAACATGAATAGTCTTA
452 AATAAGACAAACATGAATAGTCATA
* * * * *
981228 CGAATCCCCATTTTTTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCAGT-AGGACAGACGA
1 CTAATCCCCA--TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGA
** * ** * *
981292 TATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTCCC-CCAATTTTTACAAACTGTAAGTTCA
63 TATTGATGCTTTGGTTTCACAAGAAAGGCTTTC-TTCCCACCAATTTTTGTAAAGTCTAAGTTCA
* * *
981356 TG-CTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
127 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* * * * * * *
981420 AAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTT
192 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
** * * * * * *
981485 TGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGACAAGCATAGATTCTCATAAGAG
257 TGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAG
* * ** * ** * * *
981550 TCTCCCTGT-TTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATACTTGACATTGT
322 TCTCCAT-TCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGA
* * ** *
981614 TGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTT
386 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTT
* * *
981679 AAATAACACAAACTTAAATAGTCATA
451 AAATAAGACAAACATGAATAGTCATA
* * * * * *
981705 CAAATCCCCATTCATTTCATGATTACGCACCATAAACATAGTCTTCTCACT-AGGATACAAGGTA
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGATA
* * * * *
981769 TTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATG
65 TTGATGCTTTGGTTTCACAAGAAAGGC-TTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATG
** * *
981834 CCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAA
129 CCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
* * *
981899 ACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTT-TGCTTGCATGGAAAT-TTCCTT-T
194 ACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCT-TTTGCATGGAAATCTT--TTCT
* * * * * ***
981961 TTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTTTA
256 TTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACA
* * * * *
982026 GTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTTGA
321 GTCTCCATTCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGA
* * * * ** *
982091 TGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTTTT
386 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTT
* *
982156 AATTAAGACAAACATGAATAGTCTTA
451 AAATAAGACAAACATGAATAGTCATA
* * * * *
982182 CGAATCCCCATTTTTTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCAGT-AGGACAGACGA
1 CTAATCCCCA--TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGA
** * ** * *
982246 TATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTCCC-CCAATTTTTACAAACTGTAAGTTCA
63 TATTGATGCTTTGGTTTCACAAGAAAGGCTTTC-TTCCCACCAATTTTTGTAAAGTCTAAGTTCA
* * *
982310 TG-CTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
127 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* * * * * * *
982374 AAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTT
192 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
** * * * * *
982439 TGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGACAAGCATCGATTCTCATAAGAG
257 TGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAG
* * ** * ** * * *
982504 TCTCCCTGT-TTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATACTTGACATTGT
322 TCTCCAT-TCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGA
* * ** *
982568 TGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTT
386 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTT
* * *
982633 AAATAACACAAACTTAAATAGTCATA
451 AAATAAGACAAACATGAATAGTCATA
* * * * * *
982659 CGAATCCCCATTCATTTCACGATTACGCACCATAAACATAGTCTTCTCACT-AGGATACAAGGTA
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGATA
* * * * *
982723 TTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGC
65 TTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
** * *
982788 CTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAA
130 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * * *
982853 CACTTTCTCCGCATTAGGATAAATGATATTGATGATTTT-TGCTTGCATGGAAAT-TTCTTTTTT
195 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCT-TTTGCATGGAAATCTT-TTCTTT
* * * * ***
982916 GCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTTTAGT
258 GCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAGT
* * * * * *
982981 CTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCATTCATTAGGATACATTACATTGATG
323 CTCCATTCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATG
* * ** * **
983046 CTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTCCTCTCTTAA
388 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAA
* * * *
983111 TTAAGACAAATATCAATAGTCTTA
453 ATAAGACAAACATGAATAGTCATA
* * * * * *
983135 CGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAACATAGACTTCTCAGT-GGGACAGACGAT
1 CTAATCCCCA-TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGAT
** * * ** * * *
983199 ATTGATGCTTTAATATCGCAAGAAAGGCTTTCTTTCCC-CCAATTTTTACAAACTGTTAGTTCAT
64 ATTGATGCTTTGGTTTCACAAGAAAGGCTTTC-TTCCCACCAATTTTTGTAAAGTCTAAGTTCAT
* * * *
983263 G-CTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGCACTATA
128 GCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* * * * * * *
983327 AACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTT
193 AACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTT
** * * * * * * *
983392 GGTCTATTTCCCTTAAAATCAAAATTCATGCATTAAATACGGCAAGCATCGATTCTCATAAGAGT
258 GCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAGT
* ** ** * ** * *
983457 CTCCCTTTTTTTTTAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTG
323 CTCCATTCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATG
* * * * ** * *
983522 TTTTGGTGTCACAAGAAAAGCTTTCCTTTGCACCATTTTTTATATAATCAAAGTTTGTCTCTTAA
388 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAA
* * * *
983587 ATAACACAAACTTAAACAGTCATA
453 ATAAGACAAACATGAATAGTCATA
* * * * * *
983611 CAAATCCCCATTCATTTCGGGATTAGGCACCATAAACATAGTATTCTCACTAA-GATACAAGGTA
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGATA
* * * * *
983675 TTGATGCTTTGGTTTCTCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATCC
65 TTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
* * *
983740 CTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAA
130 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * * * *
983805 CACATTTTCCGCATTAGGATAAATTATATTGATGATTTT-TGCTTGCATTGAAAT-TTCCTT-TT
195 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCT-TTTGCATGGAAATCTT--TTCTT
* * * * * ***
983867 TCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTTTAG
257 TGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAG
* * * * *
983932 TCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTTGAT
322 TCTCCATTCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGAT
* * * * **
983997 GCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTCTTA
387 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTA
* *
984062 ATTAAGACAAACATGAATAGTCTTA
452 AATAAGACAAACATGAATAGTCATA
* * * *
984087 CGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGT-AGGACAGACGAT
1 CTAATCCCCA-TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGAT
** * * * * *
984151 ATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTCCC-CTAATTTTTGCAAATTGTAAGTTCAT
64 ATTGATGCTTTGGTTTCACAAGAAAGGCTTTC-TTCCCACCAATTTTTGTAAAGTCTAAGTTCAT
* * *
984215 G-CTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
128 GCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* * * * * * *
984279 AACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTT
193 AACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTT
** * ** * * *
984344 GGTCTATTTCCCTTAAAATCAAAATTCATCCAATAAATATGACAAGCATAGATTCTCATAAGAGT
258 GCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAGT
* * ** * ** * * *
984409 CTCCCTGT-TTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATACTTGACATTGTT
323 CTCCAT-TCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGAT
* * ** *
984473 GTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTA
387 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTA
* * *
984538 AATAACACAAACTTAAATAGTCATA
452 AATAAGACAAACATGAATAGTCATA
* * * * * *
984563 CAAATCCCCATTCATTTCATGATTACGCACCATAAACATAGTCTTCTCACT-AGGATACAAGGTA
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGATA
* * * * *
984627 TTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGC
65 TTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
** * *
984692 CTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAA
130 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * *
984757 CACTTTCTCCGCATTAGGATAAATGATATTGATGATTTT-TGCTTGCATGGAAAT-TTCCTT-TT
195 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCT-TTTGCATGGAAATCTT--TTCTT
* * * * * ***
984819 TCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTTTAG
257 TGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAG
* * * * *
984884 TCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTTGAT
322 TCTCCATTCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGAT
* * * * ** *
984949 GCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTTTTA
387 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTA
* *
985014 ATTAAGACAAACATGAATAGTCTTA
452 AATAAGACAAACATGAATAGTCATA
* * * * *
985039 CGAATCCCCATTTTTTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCAGT-AGGACAGACGA
1 CTAATCCCCA--TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGA
** * ** * *
985103 TATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTCCC-CCAATTTTTACAAACTGTAAGTTCA
63 TATTGATGCTTTGGTTTCACAAGAAAGGCTTTC-TTCCCACCAATTTTTGTAAAGTCTAAGTTCA
* * *
985167 TG-CTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
127 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* * * * * * *
985231 AAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTT
192 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
** * * * * *
985296 TGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGACAAGCATCGATTCTCATAAGAG
257 TGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAG
* * ** * ** * * *
985361 TCTCCCTGT-TTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATACTTGACATTGT
322 TCTCCAT-TCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGA
* * ** *
985425 TGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTT
386 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTT
* * *
985490 AAATAACACAAACTTAAATAGTCATA
451 AAATAAGACAAACATGAATAGTCATA
* * * * * *
985516 CGAATCCCCATTCATTTCACGATTACGCACCATAAACATAGTCTTCTCACT-AGGATACAAGGTA
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGATA
* * * * *
985580 TTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGC
65 TTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
** * *
985645 CTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAA
130 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * * *
985710 CACTTTCTCCGCATTAGGATAAATGATATTGATGATTTT-TGCTTGCATGGAAAT-TTCTTTTTT
195 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCT-TTTGCATGGAAATCTT-TTCTTT
* * * * ***
985773 GCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTTTAGT
258 GCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAGT
* * * * * *
985838 CTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCATTCATTAGGATACATTACATTGATG
323 CTCCATTCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATG
* * ** * **
985903 CTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTCCTCTCTTAA
388 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAA
* * * *
985968 TTAAGACAAATATCAATAGTCTTA
453 ATAAGACAAACATGAATAGTCATA
* * * * *
985992 CGAATCCCCATTTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGT-GGGACAGACGA
1 CTAATCCCCA--TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGA
** * ** * * *
986056 TATTGATGCTTTAATATT-GCAAGAAAGGCTTTCTTTCCC-CCAATTTTTACAAACTGTTAGTTC
63 TATTGATGCTTTGGT-TTCACAAGAAAGGCTTTC-TTCCCACCAATTTTTGTAAAGTCTAAGTTC
* * * *
986119 ATG-CTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGCACTA
126 ATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTA
* * * * * * *
986183 TAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCT
191 TAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCT
** * * * * * * *
986248 TTGGTCTATTTCCCTTAAAATCAAAATTCATGCATTAAATACGGCAAGCATCGATTCTCATAAGA
256 TTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACA
** ** * ** * *
986313 GTCTCCATTTTTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGT
321 GTCTCCATTCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGA
* * * * ** * *
986378 TGTTTTGGTGTCACAAGAAAAGCTTTCCTTTGCACCATTTTTTATATAATCAAAGTTTGTCTCTT
386 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTT
* * * *
986443 AAATAACACAAACTTAAACAGTCATA
451 AAATAAGACAAACATGAATAGTCATA
* * * * *
986469 CAAATCCCCATTCATTTCGGGATTAGGCACCATAAACATAGTCTTCTCACTAA-GATACAAGGTA
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGATA
* * * * *
986533 TTGATGCTTTGGTTTCTCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATCC
65 TTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
* * * *
986598 CTAAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAA
130 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * * * *
986663 CACATTTTCCGCATTAGGATAAATTATATTGATGATTTT-TGCTTGCATTGAAAT-TTCCTT-TT
195 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCT-TTTGCATGGAAATCTT--TTCTT
* * * * * ***
986725 TCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTTTAG
257 TGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAG
* * * * *
986790 TCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTTGAT
322 TCTCCATTCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGAT
* * * ** *
986855 GCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACTGTTTTCGATAGAATCAAAGTTCCTCTTTTA
387 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTA
* * * *
986920 ATTAAGACAAATATCAATAGTCTTA
452 AATAAGACAAACATGAATAGTCATA
* * * * * *
986945 CGAATCCCCATTTTTTTTCAGGATTAGGCACCGTAAACATAGTCTTCTCAGT-GGGACAGACGAT
1 CTAATCCCCA-TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGAT
** * ** * * *
987009 ATTGATGCTTTAATATT-GCAAGAAAGGCTTTCTTTCCC-CCAATTTTTACAAACTGTTAGTTCA
64 ATTGATGCTTTGGT-TTCACAAGAAAGGCTTTC-TTCCCACCAATTTTTGTAAAGTCTAAGTTCA
* * *
987072 TG-CTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
127 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* * * * * * *
987136 AAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTT
192 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
** * * * * *
987201 TGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGACAAGCATCGATTCTCATAAGAG
257 TGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAG
* * ** * ** * * *
987266 TCTCCCTGT-TTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATACTTGACATTGT
322 TCTCCAT-TCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGA
* * ** *
987330 TGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTT
386 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTT
* * *
987395 AAATAACACAAACTTAAATAGTCATA
451 AAATAAGACAAACATGAATAGTCATA
* * * * * *
987421 CAAATCCCCATTCATTTCACGATTACGCACCATAAACATAGTCTTCTCACT-AGGATACAAGGTA
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGATA
* * * * *
987485 TTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGC
65 TTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
* ** * *
987550 CTTAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAA
130 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * * *
987615 CACTTTCTCCGCATTAGGATAAATGATATTGATGATTTT-TGCTTGCATGGAAAT-TTCTTTTTT
195 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCT-TTTGCATGGAAATCTT-TTCTTT
* * * * * ***
987678 GCCCTATTTTTCTCAAAATGAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTTTAGT
258 GCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAGT
* * * * * *
987743 CTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCATTCATTAGGATACATTACATTGATG
323 CTCCATTCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATG
* * ** * **
987808 CTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTCCTCTCTTAA
388 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAA
* * * *
987873 TTAAGACAAATATCAATAGTCTTA
453 ATAAGACAAACATGAATAGTCATA
* * * * *
987897 CGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGT-GGGACAGACGAT
1 CTAATCCCCA-TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGAT
** * ** * * *
987961 ATTGATGCTTTAATATT-GCAAGAAAGGCTTTCTTTCCC-CCAATTTTTACAAACTGTTAGTTCA
64 ATTGATGCTTTGGT-TTCACAAGAAAGGCTTTC-TTCCCACCAATTTTTGTAAAGTCTAAGTTCA
* * *
988024 TG-CTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
127 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* * * * * * *
988088 AAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTTCGTGAAAATCTTTTCTT
192 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
** * * * * *
988153 TGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGACAAGCATCGATTCTCATAAGAG
257 TGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAG
* * ** * ** * * *
988218 TCTCCCTGT-TTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATACTTGACATTGT
322 TCTCCAT-TCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGA
* * ** *
988282 TGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTT
386 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTT
* *
988347 AAATAACACAAACATAAATAGTCATA
451 AAATAAGACAAACATGAATAGTCATA
* * * * * *
988373 CAAATCCACATTCATTTCAGGATTACGCACCATAAACATAGTCTTCTCACT-AGGATACAAGGTA
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGATA
* * * * *
988437 TTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGC
65 TTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
** * *
988502 CTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAA
130 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * * *
988567 CACTTTCTCCGCATTAGGATAAATGATATTGATGATTTT-TGCTTGCTTGGAAATTTCTTTT-TT
195 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCT-TTTGCATGGAAA--TCTTTTCTT
* * * * ***
988630 T-CCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTTTAG
257 TGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAG
* * * * *
988694 TCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTTGAT
322 TCTCCATTCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGAT
* * * * **
988759 GCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTCTTA
387 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTA
* * * *
988824 ATTAAGACAAATATCAATAGTCTTA
452 AATAAGACAAACATGAATAGTCATA
* * * * *
988849 CGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGT-GGGACAGACGAT
1 CTAATCCCCA-TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGAT
** * ** * *
988913 ATTGATGCTTTAATATT-GCAAGAAAGGCTTTCTTTCCC-CCAATTTTTACAAACTGTAAGTTCA
64 ATTGATGCTTTGGT-TTCACAAGAAAGGCTTTC-TTCCCACCAATTTTTGTAAAGTCTAAGTTCA
* * *
988976 TG-CTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
127 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* * * * * * *
989040 AAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTT
192 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
** * * * * * * *
989105 TGGTCTATTTCCCTTAAAATCAAAATTCATGCATTAAATACGGCAAGCATCGATTCTCATAAGAG
257 TGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAG
** ** * ** * *
989170 TCTACC-TTTTTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGT
322 TCT-CCATTCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGA
* * * * ** * *
989234 TGTTTTGGTGTCACAAGAAAAGCTTTCCTTTGCACCATTTTTTATATAATCAAAGTTTGTCTCTT
386 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTT
* * * *
989299 AAATAACACAAACTTAAACAGTCATA
451 AAATAAGACAAACATGAATAGTCATA
* * * * *
989325 CAAATCCCCATTCATTTCGGGATTAGGCACCATAAACATAGTCTTCTCACTAA-GATACAAGGTA
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGATA
* * * *
989389 TTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGC
65 TTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
** * *
989454 CTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAA
130 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * * *
989519 CACTTTCTCCGCATTAGGATAAATGATATTGATGATTTT-TGCTTGCTTGGAAAT-TTCTT-TTT
195 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCT-TTTGCATGGAAATCTT-TTCTTT
* * * * * ***
989581 TCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTTTAGT
258 GCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAGT
* * * * *
989646 CTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTTGATG
323 CTCCATTCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATG
* * * * **
989711 CTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAA
388 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAA
* * * *
989776 TTAAGACAAATATCAATAGTCTTA
453 ATAAGACAAACATGAATAGTCATA
* * * * *
989800 CGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGT-GGGACAGACGAT
1 CTAATCCCCA-TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGAT
** * ** * * *
989864 ATTGATGCTTTAATATT-GCAAGAAAGGCTTTCTTTCCC-CCAATTTTTACAAACTGTTAGTTCA
64 ATTGATGCTTTGGT-TTCACAAGAAAGGCTTTC-TTCCCACCAATTTTTGTAAAGTCTAAGTTCA
* * *
989927 TG-CTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
127 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* * * ** * * *
989991 AAACACAATCTCCTTACTAGGGCAAATGATATTGATGATTTTCTTTTTCGTGAAAATCTTTTCTT
192 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
** * * * * *
990056 TGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGACAAGCATCGATTCTCATAAGAG
257 TGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAG
** * ** * *
990121 TCTCCCTATT--TTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATACTTGACATTG
322 TCT-CC-ATTCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTG
* * * ** *
990184 TTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCT
385 ATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCT
* * *
990249 TAAATAACACAAACTTAAATAGTCATA
450 TAAATAAGACAAACATGAATAGTCATA
* * * * * *
990276 CAAATCCACATTCATTTCAGGATTACGCACCATAAACATAGTCTTCTCACT-AGGATACAAGGTA
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGATA
** * * * *
990340 TTGACACTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGC
65 TTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
** * *
990405 CTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAA
130 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * * *
990470 CACTTTCTCCGCATTAGGATAAATGATATTGATGATTTT-TGCTTGCATGGAAAT-TTCTTTTTT
195 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCT-TTTGCATGGAAATCTT-TTCTTT
* * * * * ***
990533 GCCCTATTTTTCTCAAAATGAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTTTAGT
258 GCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAGT
* * * * * *
990598 CTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCATTCATTAGGATACATTACATTGATG
323 CTCCATTCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATG
* * ** * **
990663 CTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTCCTCTCTTAA
388 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAA
* * * *
990728 TTAAGACAAATATCAATAGTCTTA
453 ATAAGACAAACATGAATAGTCATA
* * * * * *
990752 CGAATCCCCATTTTTTTTCAGGATTAGGCACTATAAACATAGTCTTCTCAGT-GGGACAGACGAT
1 CTAATCCCCA-TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGAT
* ** * ** * *
990816 ATTGATGGTTTAATATCACAAGAAAGGCTTTCTTTCCC-CCAATTTTTACAAACTGTAAGTTCAT
64 ATTGATGCTTTGGTTTCACAAGAAAGGCTTTC-TTCCCACCAATTTTTGTAAAGTCTAAGTTCAT
* * *
990880 G-CTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
128 GCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* * * * * * *
990944 AACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTT
193 AACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTT
** * * * * * *
991009 GGTCTATTTCCCTTAAAATCAAAATTCATGCATTAAATACGACAAGCATCGATTCTCATAAGAGT
258 GCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAGT
* ** ** * ** * *
991074 CTCCCTTTTTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTG
323 CTCCATTCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATG
* * * * ** * *
991139 TTTTGGTGTCACAAGAAAAGCTTTCCTTTGCACCATTTTTTATATAATCAAAGTTTGTCTCTTAA
388 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAA
* * * *
991204 ATAACACAAACTTAAACAGTCATA
453 ATAAGACAAACATGAATAGTCATA
* * * * *
991228 CAAATCCCCATTCATTTCGGGATTAGGCACCATAAACATAGTCTTCTCACTAA-GATACAAGGTA
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGATA
* * * * *
991292 TTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATCC
65 TTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
* * * *
991357 CTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTTATTTTGTGATTAGACACTATAAA
130 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * * * * *
991422 CACATTTTCCGCATGAGGATAAATTATATTGATGATTTT-TGCTTGCATTGAAAT-TTCCTT-TT
195 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCT-TTTGCATGGAAATCTT--TTCTT
* * * * * * ***
991484 TCCCCTATTTTTCTCAAAATCAAAATTCATCCCTAAAATATAACAAGCATCGATTCTTGTTTTAG
257 TGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAG
* * * * *
991549 TCTCTATTCGTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTTGAT
322 TCTCCATTCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGAT
* * * **
991614 GCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACTGTTTTCGATAGAATCAAAGTTCCTCTCTTA
387 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTA
* *
991679 ATTAAGACAAACATGAATAGTCTTA
452 AATAAGACAAACATGAATAGTCATA
* * * * *
991704 CGAATCCCCATTTTTTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCAGT-AGGACAGACGA
1 CTAATCCCCA--TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGA
991768 TATT
63 TATT
991772 AGGCACTATA
Statistics
Matches: 26859, Mismatches: 6172, Indels: 3064
0.74 0.17 0.08
Matches are distributed among these distances:
429 2 0.00
430 1 0.00
431 1 0.00
432 2 0.00
433 9 0.00
434 3 0.00
435 3 0.00
437 7 0.00
438 3 0.00
439 4 0.00
440 4 0.00
441 10 0.00
442 7 0.00
443 6 0.00
444 6 0.00
445 1 0.00
447 9 0.00
448 5 0.00
450 15 0.00
451 2 0.00
452 3 0.00
453 4 0.00
454 7 0.00
455 11 0.00
456 4 0.00
457 1 0.00
459 4 0.00
460 52 0.00
461 126 0.00
462 201 0.01
463 7 0.00
464 2 0.00
465 22 0.00
466 348 0.01
467 46 0.00
468 15 0.00
469 117 0.00
470 98 0.00
471 428 0.02
472 136 0.01
473 991 0.04
474 2151 0.08
475 5253 0.20
476 9553 0.36
477 3295 0.12
478 1578 0.06
479 384 0.01
480 100 0.00
481 37 0.00
482 17 0.00
483 21 0.00
484 28 0.00
485 27 0.00
486 15 0.00
487 18 0.00
488 10 0.00
489 23 0.00
490 11 0.00
491 13 0.00
492 21 0.00
493 10 0.00
494 27 0.00
495 40 0.00
496 46 0.00
497 30 0.00
498 27 0.00
499 42 0.00
500 40 0.00
501 16 0.00
502 28 0.00
503 37 0.00
504 34 0.00
505 34 0.00
506 27 0.00
507 39 0.00
508 31 0.00
509 32 0.00
510 13 0.00
511 26 0.00
512 24 0.00
513 26 0.00
514 47 0.00
515 22 0.00
516 28 0.00
517 15 0.00
518 25 0.00
519 23 0.00
520 23 0.00
521 33 0.00
522 25 0.00
523 31 0.00
524 50 0.00
525 37 0.00
526 40 0.00
527 16 0.00
528 15 0.00
529 23 0.00
530 35 0.00
531 17 0.00
532 33 0.00
533 62 0.00
534 16 0.00
535 20 0.00
536 20 0.00
537 11 0.00
538 36 0.00
539 9 0.00
540 20 0.00
541 12 0.00
542 20 0.00
543 16 0.00
544 2 0.00
545 8 0.00
546 5 0.00
547 16 0.00
548 14 0.00
549 15 0.00
550 4 0.00
551 22 0.00
552 9 0.00
553 14 0.00
554 10 0.00
555 5 0.00
556 2 0.00
557 1 0.00
558 5 0.00
559 7 0.00
560 6 0.00
561 6 0.00
562 4 0.00
563 11 0.00
564 5 0.00
565 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (476 bp):
CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
TGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCC
TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAC
ACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
CTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAGTCTC
CATTCCTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTT
TGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
AGACAAACATGAATAGTCATA
Found at i:958659 original size:474 final size:475
Alignment explanation
Indices: 956730--968923 Score: 12697
Period size: 475 Copynumber: 25.7 Consensus size: 475
956720 CAAAGTTTGT
* * * * *
956730 CTAATCCCCATACTTTTCAGGATTAGCCACCATAAACATAGTCTTCTCATTAGGATAGATGATAT
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
* ** * *
956795 TGATGTTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAAATTTTGTAACA-TCTAAGTTCGTGC
66 TGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAA-AGTCTAAGTTCATGC
* * * **
956859 CTCAAATGAGACAAACATGGATTCTAGTAAAGATCCTT-ATTCATTTTATGATTAGGCATTGCAA
130 CTCAAATGAGACAAACATGGATTCTAGTAATGAT-CTTCATTCATTTTGTGATTAGGCACTATAA
* * * * * * * * * *
956923 ACTCATTCTCCTTAATATGATAAATGACATTCATGATTTTTTTTTTTTTGCATAGAAACCTCTTC
194 ACACATTCTCCTCATTAGGATAAATGATATTGATGA----TTTTCTTTTGCATGGAAATCTTTTC
* * * * *
956988 TTCGCCCCATTTTCCTTAAAATAAAAATTCATCCTTTAAATATGACAAGCATTGTTTCTCGTAAC
255 TTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCA-TGATTCTCGTAAC
* * * *
957053 GGTCTCCATTCTTTTCACGATTGGGAACTAAGAACACATTCCCTTCATTAAGATACATGACATTG
319 AGTCTCCATTCTTTTCAAGATTGGGAACAAAGAACACATTCCCTTCATTAGGATACATGACATTG
* * ** * * **
957118 ATGATTTGGTGTCGCTAGAAAAGCCTTTATTTCCACCATTTTTAATAGAATCAAAGTTTGTCTAA
384 ATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCT
* * *
957183 AAAATAAGACAAACATTAATACTCATA
449 TAAATAAGACAAACATGAATAGTCATA
* * * * * ** *
957210 CAAATCTCCACTCTTTTCAGGATTAGGCACCATGAACATAGTCATCTCATTAA-GATTGATGATA
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGATA
* * * * *
957274 TTGATGCATTGG-TTTGCTAGGAAAGGCTTTCTT-CTACCAATTTTTGTAAAGTATAAGTTCGTG
65 TTGATGCTTTGGTTTTGC-AAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATG
* * *
957337 CTTCAAATGAGATAAACATGGATTCTAGTAA-GTATCCTT-ATTCATTTTGTGATTAGGCACTAC
129 CCTCAAATGAGACAAACATGGATTCTAGTAATG-AT-CTTCATTCATTTTGTGATTAGGCACTAT
* * *
957400 AAACACATTCTCCTTAATAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTT
192 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
* * * * *
957465 TACCCTATTTTCCTTAAAATTAAAATTCATCCCTTAAATATGACAAGCATCGTTTCTCATAAAAG
257 TGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCAT-GATTCTCGTAACAG
* * * * * * * * *
957530 TCTCCATTCCTTTCAGGATT-GGAACCAAGAACACACTCCTTTCCTTAGGATACAAGATATTAAT
321 TCTCCATTCTTTTCAAGATTGGGAACAAAGAACACATTCCCTTCATTAGGATACATGACATTGAT
* * ***** * * *
957594 GCTTTGGAGTCGCAAGAAAAGCTTTTCTTTCCTTTGCTTTTAATATAATCAAAGTTTGTCTCGTA
386 GCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTA
* *
957659 AAAAACACAAACATGAATAGTCATA
451 AATAAGACAAACATGAATAGTCATA
* * *
957684 CTAATCCCCATTATTTTCAGGATTAGGCACCCTAAACATAGTCTTCTTATAAGGATACACGATAT
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
* *** * *
957749 TGACGCTTTGGTTTCATAAGAAAAGCTTTCTTCACACCAATTTTTGTAAAGTGC-AAGTTCATGC
66 TGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGT-CTAAGTTCATGC
* * *
957813 CTTAAATGAGACAAACATGGATTCTAGTAAGGA---TC-TTCATTTTGTGATTAGGCACTATAGA
130 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * ** *
957874 CACATTCTCCACAATAGGATAAATGATATAAATGATTTTCTTTTGCATGAAAATCTTTTCTTTGC
195 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
* * *
957939 CCTATTTTCTTTAAAATTAAAATTCATCCCTTAAATATGACAAGCATTATT-TCCTGTAACAGTC
260 CCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATGATTCT-C-GTAACAGTC
* * * * * *
958003 TCCCTTTTTTTGACA-ATT-GGAACCAAGAACACATTCCCTTCCTTAGGATGCATGACATTGATG
323 TCCATTCTTTTCA-AGATTGGGAACAAAGAACACATTCCCTTCATTAGGATACATGACATTGATG
* * * * * * **
958066 CTATGGTGTCACAAG-AAAGCTTTTCTTTCCACCATTTGTGACAAAATCAAAGATTT-TCTCCGA
387 CTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTTTGATAGAATCAAAG-TTTGTCTCTTA
* *
958129 AATAAAACAAACATGAATACTCATA
451 AATAAGACAAACATGAATAGTCATA
* * *
958154 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAA-ATAGTCTTCTCATTAGGATAAAAGATAT
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
* * *
958218 TGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCTACCAATTTTTGTAACGTCTAAGTTCATACC
66 TGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCC
* * * * * * * * * *
958283 TCGAATGAGACAAACATTGATTCTAGTAAGGATCCTCTTTTAATTTCTGATTAGACACTACAAAC
131 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAC
* * * ** *
958348 ACATTCTCCTCAATAGGATAAATGATATTGATAATTATCTTTTGTGTGAAAATCATTTT-TTTGC
196 ACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATC-TTTTCTTTGC
* * * * * *
958412 CCTGTTTTTCTTAAAATCAAAATTCATCCCTTAAATACGACATGCATTATTTCTCATAACAGTCT
260 CCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATGA-TTCTCGTAACAGTCT
* * * * * *
958477 CCATTCTTTTCACGATTGGGAACAAATAACACATTCTCGTCATTAAGATACATGATATTGATGCT
324 CCATTCTTTTCAAGATTGGGAACAAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCT
**** * * ** *
958542 CCAATGTTGCAAGAAAAGGATTT-TTTCCACTGTTTGTGATAGAATCAAAGTTTGTCTCTTAAAT
389 TTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* *
958606 ATGACAAACATGAATAGTCGTA
454 AAGACAAACATGAATAGTCATA
* * * * ** * * *
958628 TTACTCCCAATTCTTTACAGGATTAGGCACCATAAATGTAGTCTTCTAATAAAGATACACAATAT
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
* * *
958693 TGATGCTTTGGTTTCGCAAGAAGGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGCTT-ATGC
66 TGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAG-TTCATGC
* * * * * * *
958757 ATTAAATGAGACAAACAAGGATTATAGTAAGGATCTTCATTCATTTTGTGATTAGGCAATACAAA
130 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * * * * * *
958822 CACATTTTCTTCAATAGGATAAATGATGTTGATAATTTTCTTTTGCGTGAAAATCTTTTCTTTGC
195 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
* * * * * * *
958887 CTTATTTTCCTTAAAATCAAAATTCATCCTTTCAATAAGACAAGTATCGATTCTCGTAATACTCT
260 CCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCAT-GATTCTCGTAACAGTCT
* * *
958952 CTATTCTTTTTAAGATTGGGAACCAAA-AATACATTCCCTTCATTAGGATACATGACATTGATGC
324 CCATTCTTTTCAAGATTGGGAA-CAAAGAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * ** * * * *
959016 TATGGAGTCATAGGAAAAGGTTTTATTTCCACCATTTTTTATAGAATCAAAGTTTGTCTTTTAAA
388 TTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAA
*
959081 TAAGTCAAACATGAATAGTCATA
453 TAAGACAAACATGAATAGTCATA
* * * ** * *
959104 CCAATCCCTATTCTCTTCTAGG-TTAGGCACCATAAACATAGTCTTCTTGTTAGGATAGACGATA
1 CTAATCCCCATTCTTTTC-AGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATA
* * * *
959168 TTGATGCTTTGGTTTTGCAAGAAAAGCTTTCTTCCCACTAATTTTTGTAAAGTCTAGGTTCGTGC
65 TTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
* * * *
959233 CTCAAACGAGACAAACATGGATTCTAGTAATGATCTTCCTTCATTTTATGATTAGGTACTATAAA
130 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * * *
959298 CACATTTTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCCT-AAAATCTTTTCTTTGC
195 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
* * * ** * * *
959362 CCTATTTT-CTACAAAATCAAAATTCATCTCTTAAATAAGGTAATCACTGATTCCCGTAGCAGTC
260 CCTATTTTCCT-TAAAATCAAAATTCATCCCTTAAATATGACAAGCA-TGATTCTCGTAACAGTC
* * * * * * * * * *
959426 TCCATTCATTCCAAGACTAGGAGCCAAA-AAGACATTCCTTTGATTAGGATACATGATATTGACG
323 TCCATTCTTTTCAAGATTGGGA-ACAAAGAACACATTCCCTTCATTAGGATACATGACATTGATG
* * * * *
959490 CTTTGGTGTCGCAGGAAAAGGTTTTCTTTCAACCATTTTTGATAGAATTAAAATTTGTC-CCTAA
387 CTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAA
** * *
959554 ATAAGTTAAACATGAATAGTTATG
452 ATAAGACAAACATGAATAGTCATA
* * * *
959578 CTAATCCCCATTCTTTTCAGGATTAGCCACCATAATCATAGTTTTCTTATAAGGATACACGATAT
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
** * * * * *
959643 TGACACTTTAGTTTTACAAGAAAGGCTTTCTTCCCACCAAATTTTATAAAGTCTAAGTTCATACC
66 TGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCC
* * *
959708 TCAAATGAGATAAACATGGATTCTAGTAATGATATTCATTCATTTTGTGATTAAGCACTATAAAC
131 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAC
* * * *
959773 ACATTCTCCTCATTAGGATAAATGATATTGATGA-TTTGTTTTCCATAGAAATCTTTTTTTTTTG
196 ACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATC--TTTTCTTTG
* * * * * *
959837 CCTTATTTTCCTTAAAATAAAAATTCATCTCTTAAATAAGGCAAGCATTGATTCCCGTAACAGTC
259 CCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCA-TGATTCTCGTAACAGTC
* * * * * *
959902 TCCATTCTTTTCTAGATTGGGAACCAAGAATACA-CCCCTTTCCTTAGGATACATGACATTAATG
323 TCCATTCTTTTCAAGATTGGGAACAAAGAACACATTCCC-TTCATTAGGATACATGACATTGATG
* * * **
959966 CTTTGGTGTTCGCAAGAAAAGCTTTTATTTCCTCTGTTTTTGATAGAATCAAAGTTTGTCTCTTA
387 CTTTGGTG-TCGCAAGAAAAGGTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTA
*
960031 AATAAGCCAAACATGAATAGTCATA
451 AATAAGACAAACATGAATAGTCATA
* *
960056 CTAATCCCCATTCTTTTCAGGATTCA-GCACCATAAACATAGTCTTCTCATAAGGATATACAATA
1 CTAATCCCCATTCTTTTCAGGATT-AGGCACCATAAACATAGTCTTCTCATAAGGATACACGATA
* * * *
960120 TTGATGCTTTGGTTTTGCAAGAAAAGCTTTCTTCCCCCCAAATTTTGTAAAGTCTAAGTTGATGC
65 TTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
* * * * * *
960185 CTCAAATAAGACGAACAAGGATTCTAGTAATGATTTTTA-TCTATTTTGTGTTTAGGCACTATAA
130 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTC-ATTTTGTGATTAGGCACTATAA
* * *
960249 ACACATTCTCCTCATTAGGATAAATGACATTGATGATTTTTTTTTTTGCATGGAAATCTTTTCCT
194 ACACATTCTCCTCATTAGGATAAATGATATTGATGA--TTTTCTTTTGCATGGAAATCTTTTCTT
* ** * * *
960314 TGCCCTATTTTCCTTAGAATCAATGTTAATCCCATAAATAAGACAAGCATTGATTCTCGTAACTA
257 TGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCA-TGATTCTCGTAAC-A
* * * *
960379 -TCTACA--C---TC----TT---AACCAATAACACATTCCAC-TCATTAGGATATATGACATTG
320 GTCTCCATTCTTTTCAAGATTGGGAACAAAGAACACATTCC-CTTCATTAGGATACATGACATTG
* *
960430 ATGCTTTAGG-GTCGCAAGAAAAGGTTTTCTTTCCACCATTTTTCATAGAATCAAAGTTTGTGTC
384 ATGCTTT-GGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTC
* *
960494 TTAAATAAGAGAAACATGACTAGTCATA
448 TTAAATAAGACAAACATGAATAGTCATA
*
960522 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATAT
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
* ** * * *
960587 CGATGCTTTAATTTTGCATGAAAGGCTTTCTTCCCACCAAATTTTGTAAAGGCTAAGTTCATGCC
66 TGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCC
* * * * *
960652 TCAATTGAAACAAACATGAATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTACAAGC
131 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAC
* * * *
960717 ACATTCTCCTTATTAGAATAAATGATATTCATGATTTTTTTCTTTGCATGGAAATCTTTT-TTTC
196 ACATTCTCCTCATTAGGATAAATGATATTGATGA-TTTTCT-TTTGCATGGAAATCTTTTCTTT-
* *
960781 GCCTTATTTTCCTTAAAATCAAAATTCATGCCTTAAATATGACAAGCATTGATTCTCGTAACAG-
258 GCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCA-TGATTCTCGTAACAGT
* * * * *
960845 CATCCATTCTTTTCAAGATTAGGAACTAAGAATACATACCCTTAATTAGGATACATGACATTGAT
322 C-TCCATTCTTTTCAAGATTGGGAACAAAGAACACATTCCCTTCATTAGGATACATGACATTGAT
* * * * ** *
960910 GCTTTGGTGTCGCAATAAATGGTTTTCTTTTCACCAGTTTTGATAGAATCAAAGTTTAACACTTA
386 GCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTA
*
960975 AATAAGTA-AAACATGAATAGTCAAA
451 AATAAG-ACAAACATGAATAGTCATA
* * * *
961000 ATAATCCCAATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAGACGATTA
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGA-TA
* * * * *
961065 TT-ATGCTTT-ATTGTTGCAAGAAAGGCTTT-TTCCCAACTAACTTTTGTAAATTTTAAGTTCAT
65 TTGATGCTTTGGTT-TTGCAAGAAAGGCTTTCTTCCC-ACCAATTTTTGTAAAGTCTAAGTTCAT
* * * * * *
961127 GCCTTAAATGAGACAAACATGGATTTTAGTAGTCATCCTCATTCATTTTGTGATTAGGCA--AAA
128 GCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
** * * * * **
961190 AAGCATTTTCTCCTTAATAGGATAAATGATATCGAT-AGTTTTCTTTTGCCTTAAAATCTTTT-T
193 AA-CACATTCTCCTCATTAGGATAAATGATATTGATGA-TTTTCTTTTGCATGGAAATCTTTTCT
* * * * * **
961253 TTGCCCTATTTTCGTTAAAAACAAAATTCATCGCTTAAAT-TAGGCAAGTATTGATTCTCGTAGT
256 TTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATAT-GACAAGCA-TGATTCTCGTAAC
** * * * * *
961317 AGTCTCCATTCTTTAAAAGATTGGGAACCAAA-AACACAATGCCTTAAATAGGATATATGACATT
319 AGTCTCCATTCTTTTCAAGATTGGGAA-CAAAGAACACATTCCCTTCATTAGGATACATGACATT
* * * * * *
961381 GATGCATTGGTGTCGTAAGAAAAGGTTTTCTTTCCACCGTTTTTCATAGAATCAAAGTTTATCTT
383 GATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTC
*
961446 TTAAATAAGTCAAACATGAATAGTCATA
448 TTAAATAAGACAAACATGAATAGTCATA
* * * * *
961474 CTAATCCCCATTCTTTTCCA-GATTAGGCACTATAAACATAATCTTCTCATTAGGTTAGACGATA
1 CTAATCCCCATTCTTTT-CAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATA
*** * * * *
961538 TTGATGCTTTGGTTTCATAAGAAAAGCTTTTTTCCCACCAATTTTTGTAAAGGCTAAGTTCGTGC
65 TTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
** * * * *
961603 CTCAAACAAGACAAACATGGATTTTAGTAATGATCTTTATTTATTTTGTGATTAGGTACTATAAA
130 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * * * **
961668 CACGTTCTCCTCATTACGATAAATGATATTGATGGTTTTCTTTTGCCTTAAAATCTTTTCTTTGC
195 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
* * ** * * * ** * *
961733 CTTATTTTTCGCAAAATCAAAATTCAGCTCTTAAATAAGGTAAGCATTGATTCCCGTAATAGTCT
260 CCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCA-TGATTCTCGTAACAGTCT
* * * * *
961798 CCA-TCCTTTCAAGATTAGGAACCAAA-AACACATTTCCTTGATTAGGATGCATGACATTGATGC
324 CCATTCTTTTCAAGATTGGGAA-CAAAGAACACATTCCCTTCATTAGGATACATGACATTGATGC
* ** * * *
961861 TTTGGTGTCGCAAGAAAAGGTTTTCTTTCTACCATTTTTGATTTAATCAAAGTTTATCACTAAAA
388 TTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* * *
961926 TAAGACAAACATGAATATTTAAA
453 TAAGACAAACATGAATAGTCATA
* * * *
961949 CTAATCCCCATTGTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGACACATGATAT
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
* * * * *
962014 TAATGCTTTGGTTTTACAAGAAAGGCTTTCTTCCAATCAATTTTTGTATAA-TCTAAGTTCGTGC
66 TGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTA-AAGTCTAAGTTCATGC
* * * * *
962078 TTCAAATGAGACAAATATGGATTCTAATATTGATCTTCATTCATTTTGTGATTAGGCACTATGAA
130 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
962143 CACATTCTCCTCATTAGGATAAATGATATTGATGATATTT-TTTTGCATGGAAATCTTTTCTTTG
195 CACATTCTCCTCATTAGGATAAATGATATTGATGAT-TTTCTTTTGCATGGAAATCTTTTCTTTG
* *
962207 CCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATTGATTTTCGTAACAATC
259 CCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCA-TGATTCTCGTAACAGTC
* * * * *
962272 TCCATTCTTTTCAAGATTGGGAACCAAGAAGACACTT-CCTTGATTAGGATATATAACATTGATG
323 TCCATTCTTTTCAAGATTGGGAACAAAGAACACA-TTCCCTTCATTAGGATACATGACATTGATG
* * * * ** * * *
962336 CTTTGGTGTTGTAAAAAAATGTTTTCTTTGTATCGTTTTTGATAGAATCAAAGTTTGTCTCTAAA
387 CTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAA
* *
962401 ATATGATAAACATGAA-AGGTCATA
452 ATAAGACAAACATGAATA-GTCATA
* * * * *
962425 ATAATCCCCATTGTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGACACACAATAT
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
** * * * ** *
962490 TGACACTCTGGTTTTGCAAGAAAGGCTTTCTTCCAACCAATTTTTGTATAGTCTAAGTTGGTGCT
66 TGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCC
* * * * * * *
962555 TCAAATGAGGCAAACATTGATTATAGTATTGATCTTCATTCATTTTGTGATTAAGTACTATGAAC
131 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAC
* *
962620 ACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTTTGCATGGAAATCTTTTTTTTG
196 ACATTCTCCTCATTAGGATAAATGATATTGATGA--TTTTCTTTTGCATGGAAATCTTTTCTTTG
* * * * * * * *
962685 CCCTATTTTCCTTAAAATCAAAATTGATCCATTAAATACGAAAAGAATCGATT-TGCATAAAAGC
259 CCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCAT-GATTCT-CGTAACAGT
* * *
962749 CTCCATTCTTTTCAAGATTGGGAACCAAA-AACACATTCACTTGATTGGGATACATGACATTGAT
322 CTCCATTCTTTTCAAGATTGGGAA-CAAAGAACACATTCCCTTCATTAGGATACATGACATTGAT
* * * * *
962813 GCTTTGATGTCGCAGGAAAAGGTTTTCTTTCAACCATTTTTTATAGAATCAAAGTTTGTCT-TGA
386 GCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTA
* *
962877 AATAAGTCGAACATGAATAGTCATA
451 AATAAGACAAACATGAATAGTCATA
* * * * *
962902 CTAATCCTCATTCTCTTCAGGATTAGGCATCTTAAACATAGTCTTCTCATTAGGAT-CGACGATA
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATAC-ACGATA
* * *** * *
962966 TTCATGCTTTGGTTTTGTAAGAAAGGCTTTC-TCCTGTTCAATTTTTGTAAAGTCCAAGTTCGTG
65 TTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCC-CACCAATTTTTGTAAAGTCTAAGTTCATG
* * * *
963030 CCTTAAATGAGACAAACATGGATTCTAGTAATCATCTTCGTTCATTTTGTGATTAGGCATTATAA
129 CCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
* * * * * *
963095 ACATA-TCTCCTCATTAGTATAAATGACACTGATGATTTCCTTTTGCTTGGAAATCTTTTCTTTG
194 ACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG
** * * * * * *
963159 CCAAATTTTTTCATAAAATCAAAATTCATCTCC-TAAATTTGGCAAGCATTGATCCTCGTAACAA
259 CCCTA-TTTTCCTTAAAATCAAAATTCATC-CCTTAAATATGACAAGCA-TGATTCTCGTAACAG
* * * * *
963223 TCTCCATTCTTTTCAAGATTGGGAACCAAGAATACTTTCCTTTCATTAGGATACATGACATTGAA
321 TCTCCATTCTTTTCAAGATTGGGAACAAAGAACACATTCCCTTCATTAGGATACATGACATTGAT
* * * * * *
963288 GCTTTGGTGTCACAAGAAAAGCTTTTCTCTT-AACCATTTCTGATAGAATCAACGTTTTTCTCTT
386 GCTTTGGTGTCGCAAGAAAAGGTTTTCT-TTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTT
* *
963352 AAATATGACAAACATGAATACTCATA
450 AAATAAGACAAACATGAATAGTCATA
* * * *
963378 CTAATCCCTATTCTTTTCAGGATTCGACACCATAAACATAGTCTTCGT-ATAAGAATACACGATA
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC-TCATAAGGATACACGATA
* *** * * * *
963442 TTGATGCTTTAGTTTCATAAGAAATGATTTTTTCCCCCCAATTTTTGTAAAGTCTAAGTTCATGC
65 TTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
* * * * * *
963507 CTCAAATGAGACAAATATGGATTCTAATAATAATATTTATTCATTTAG-GATTAGGCACTATAAA
130 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * *
963571 CAGATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATAGAAAACTTTTCTTTGC
195 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
* * ** * * *
963636 CCTATTTTTCTTAAAATCAAAATTCATCCCTTAGATAAAACAAGCATCGATTCTCATAGCAGTTT
260 CCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCAT-GATTCTCGTAACAGTCT
* * *
963701 CAATTCTTTCCAAGATTGGGAAGCAAA-AGCACATTCCCTTCATTCA-GATACATGACATTGATG
324 CCATTCTTTTCAAGATTGGGAA-CAAAGAACACATTCCCTTCATT-AGGATACATGACATTGATG
* * *
963764 CTTTGGTGTTGCAAGAAAAGGTTTTCTATCCCCCATTTTTGATAGAATCAAAGTTTGTCTCTTAA
387 CTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAA
* *
963829 ATAAGACAAACAT-AGATAATCACA
452 ATAAGACAAACATGA-ATAGTCATA
** * * * *
963853 CTAATCCTTATTCTTTTCAAGATTAGGCACCATAAACATGGTCTTCTTATAATGATACACGATAT
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
* * *
963918 TGATGCTTTGGTGTTGTAAGAAAGGCTTTCTTGCCACCAATTTTTGTAAAGTCTAAGTTCATGCC
66 TGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCC
* ** * * * *
963983 TCAGATGAGACAAACATGGATTCTAGTGTTGATCTTCATTCATTTTGGGATTAAGCACAATAAAG
131 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAC
** * * *
964048 ACATTCTCCTTGTTAGGATAAATGATAGTGATGACTTTCTTTTGCATGGAAATCTTTTTTTTGCC
196 ACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
* * * * **
964113 CTACTTTCCTTAAAATAAAAATTCATCCCTTAAATATTATACTCATCGATTCTCGTAACAGTCTC
261 CTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCAT-GATTCTCGTAACAGTCTC
* * * * * *
964178 TATTTTTTTCAAGATTAGGAACCAAA-AACATATTCCCTTCA--AGTATACATGACATTGAAGCT
325 CATTCTTTTCAAGATTGGGAA-CAAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * ** ** * *
964240 TTGGTGTTAG-AA-AAGAAGCTTTTCTTTCAACTGTCCTTAATAGAATCAAAGTTTCTCTCTTAA
389 TTGGTG-TCGCAAGAA-AAGGTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAA
*
964303 ATAAGACAAACATGAATA-CCAATA
452 ATAAGACAAACATGAATAGTC-ATA
* * * * * * *
964327 CTAATCCCCATTCTTTTCTGGATTTGGAACCATTAACATAGTCTTCTCATAAGGGTGCACGATGT
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
* * * * *
964392 TGATGCTTTGGTTTTGCAGGAAAGGCTTTCTT-CCACTAATTTTTGTAAGGTCTAAGTTCGTGCA
66 TGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCC
* * * *
964456 TTAAATGAGACAAACAAGGATTCTAGTAATGA-CATTTATTGATTTTGTGATTAGGCACTATAAA
131 TCAAATGAGACAAACATGGATTCTAGTAATGATC-TTCATTCATTTTGTGATTAGGCACTATAAA
* * *
964520 CACATTCTCCTCCTTAGAATAAACGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
195 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
* ** *
964585 CTTATTTTCCTTAAAATCAAAATTCATCCCAAAAATATGACAAGAATCGATTCTCGTAACAGTCT
260 CCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCAT-GATTCTCGTAACAGTCT
* * * * *
964650 CCATTCTTTTCAAGATTGGGAACCAAGAATACATTCCTTTTATTAGGATACATGGCATTGATGCT
324 CCATTCTTTTCAAGATTGGGAACAAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * *
964715 TTCGTGTCGTAA-AGAAACGTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAA
389 TTGGTGTCGCAAGA-AAAGGTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAA
*
964779 TAAGACAAACATTAATAGTCATA
453 TAAGACAAACATGAATAGTCATA
* ** * * * * * * *
964802 TTAATCCCCATTCTTTTCAGCCTAAGGCACCATAAACATAGTATTGTCTTTAA-TATAGATGATA
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTC-ATAAGGATACACGATA
* * * * * * * * *
964866 CTAAAGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCC-CCAATTTTTGTCAAGTGTAAGTTTATAC
65 TTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
* * * * *
964930 CACAAACGAAACAAAC----A---T-G----GAT-TTCATTCAATCTGTGATTAGGCACTATAAA
130 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * * *
964982 AATATTCTCCTTATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTCC
195 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
* * * *
965047 CCTATTTTCCATAATATCAAAATTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTTT
260 CCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCAT-GATTCTCGTAACAGTCT
* * * ** *
965112 CCATTCCTTTT-AAGATTGGGAAGCAAA-AGCACAATCCCTTCATTACGATACCCGATATTGATG
324 CCATT-CTTTTCAAGATTGGGAA-CAAAGAACACATTCCCTTCATTAGGATACATGACATTGATG
* * * * *
965175 CTTTGGTGTCGTAAG-AAAGCTTTTCTTT-CAACAGTTTTGGATAGAATCAAAATTTGTGC-CTT
387 CTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCA-TTTTTGATAGAATCAAAGTTTGT-CTCTT
* * *
965237 AAATAAGACAAACATCAACACTCATA
450 AAATAAGACAAACATGAATAGTCATA
* *
965263 CTAATCCCCATTCTTTTCTA-GATTAGGCACCAT-AACATATTCTTCTCATAAGGATACACGATG
1 CTAATCCCCATTCTTTTC-AGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATA
* * * *
965326 TTGATGGTTTGGTTTCGCAGGAAAAGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
65 TTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
* * * * *
965391 CTCAAATAAGACAAACGTGGATTCTAATACTGATTTTCATTCATTTTGTGATTAGGCACTATAAA
130 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * * *
965456 CACATTCTCCTCTTTAGAATAAATCATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTGC
195 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
* * * * *
965521 CCTATTTTCCTTAAAATCAAAATTCA-CCCTTAAAAATGGCAAGAATCTATTCTCGTAATAGTCT
260 CCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCAT-GATTCTCGTAACAGTCT
* * * *
965585 CCATTCATTTT-AAGATTGGGAACCAAGAATACATTCCCTTTATTAGGATACATGGCATTGATGC
324 CCATTC-TTTTCAAGATTGGGAACAAAGAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * * **
965649 TTTCGTGCCGCAA-AGAAAGGTTTTCCTTCTACTGTTTTTTGATAGAATCAAAGTTTGTCTCTTA
388 TTTGGTGTCGCAAGA-AAAGGTTTTCTTTCCAC-CATTTTTGATAGAATCAAAGTTTGTCTCTTA
* **
965713 AATAAGAAAAATGTGAATAGTCATA
451 AATAAGACAAACATGAATAGTCATA
* * * * ** * * ***
965738 CTAAT-CCAATTCTTCTCAGCATGAGGTGCCATAAACATAGTCTTGTCTTTAA-GATAGGTGATA
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTC-ATAAGGATACACGATA
* * * * **
965801 TTGATGCATTGG-TTTACAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTGTAAGTTTGTGC
65 TTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
* * * * * * * * *
965865 CACATATAAGACAAACATGGATTCTTGTAAGGAT-TTCATTGATTCTATCATTAGGCACTATAAA
130 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * *
965929 CATATTCTCCTCATTAGGATAAAAGATATTGATGATTTTCTTTTGCATGGAACTCTTTTCTTTGC
195 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
* * ** *
965994 CCTATTTTCCATAAAATCAAAATTTATCCCTTAAATAAAACAAGCATCGATTCTCGTAACAGTTT
260 CCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCAT-GATTCTCGTAACAGTCT
* * * * * * * * *
966059 GCATTCCTTTCAAGATTAGGAAGCAAA-AGCACAATCCCTTCGTTACGATACCTGACATTGAAGC
324 CCATTCTTTTCAAGATTGGGAA-CAAAGAACACATTCCCTTCATTAGGATACATGACATTGATGC
* ** * * * * *
966123 TTTGGTGTCACAA-AAAACCTTTTCTTTCAACCATTTTTTATAGAACCAAAGTTCGTGTCTTAAA
388 TTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* *
966187 TAAGACAAACATTAATACTCATA
453 TAAGACAAACATGAATAGTCATA
* * * * * * *
966210 CTAATCCTCATTCTTTTCTGGATTAGGCACCATAAACCTTG-CTTCTTATAAGGATACATGATGT
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
* ** * **
966274 TGATG-TTTTGTTTT-CAAAAGAACTGCTTTCTTCCCACCAATTTTTGTAATGTCTAAGTTTGTG
66 TGATGCTTTGGTTTTGC--AAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATG
* * * * * *
966337 CCTTAAATAAGACAAACATTGATTCTAATAATGATCTTCATTCATTTTGTGACTAGCCACTATAA
129 CCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
* * * *
966402 ACATATTCTCCTCATTAGGATGAATGATATTGCTGATTTTCTGTTGCATGGAAATCTTTTCTTTG
194 ACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG
* **
966467 CCATATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCG-ATACAAC
259 CCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCAT-GATTCTCGTA-ACAGT
** * * * *
966531 CTCCATTCTCATCAAGATTGGGAACCAAGAATACTTTCCCATCATTAGGATACATGACATTGATG
322 CTCCATTCTTTTCAAGATTGGGAACAAAGAACACATTCCCTTCATTAGGATACATGACATTGATG
* * * * *
966596 CTTTGG-GAC-CATAAGAAAAGCTTTTC-TTCCAACCGCTTTTTTATTGAATCAAAGTTTGTCTC
387 CTTTGGTGTCGC--AAGAAAAGGTTTTCTTTCC-ACC-ATTTTTGATAGAATCAAAGTTTGTCTC
* * *
966658 TTAAATATGACAAACATTAATACTCATA
448 TTAAATAAGACAAACATGAATAGTCATA
* * * * * * * *** * *
966686 CTAATCCCAATTCTTTACAGCATGAGGCACCATAAACATAGTCTTGTCTTTAGGATAGGTGAAAC
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
* * * ** *
966751 TGAAGCTTTGGTTTCGCAAGAAAGGCTTT-TTCCC-CTAATTTTTGTAAAGTGGAAGTTCATACC
66 TGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCC
* * * *
966814 ACAAATGAAACAAACATGGATTCTAGT-ATGGAT-TTCATTCATTCTATGATTAGGCACTATAAA
131 TCAAATGAGACAAACATGGATTCTAGTAAT-GATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * * * *
966877 AATATTCTCCTTATTAGGAAAAATGATATTGATGATTTT-TTTTACATGGAAATCTTTTCTTT-C
195 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
* * * * * * *
966940 CCTTATTTTCCATAAAATAAAAATTCATCTCTCAAATAAGACAAGCATCACTTCTCGTAACAGTT
260 CC-TATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATGA-TTCTCGTAACAGTC
* * * * ** * *
967005 TCCATTCCTTTCAGGATAGGGAAGCAAA-AGCACAAACCCTTCATTACGATACCTGACATTGATG
323 TCCATTCTTTTCAAGATTGGGAA-CAAAGAACACATTCCCTTCATTAGGATACATGACATTGATG
* * * * *
967069 CTTTGGTGTCGCAAG-AAAGCTTTTCTTTCAACCGTTTTGGATAGAATCAAAGTTTGTGTCTTAA
387 CTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAA
* * *
967133 ATATGACAAACATCAATACTCATA
452 ATAAGACAAACATGAATAGTCATA
* * * * *
967157 CTAATCCCCATTCTTTTCTA-CATTAGGCACGATAAACAAATTCTTCTCATAAGGATACACGATG
1 CTAATCCCCATTCTTTTC-AGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATA
* * * * * **
967221 TTGATGGTTTGGTTTCGCAAGAAAAGCTTTATTCCCACTAATTTTTGTAAAGTCTAAGTTTGTGC
65 TTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
* * *
967286 CTCAAAT-AGACAAACATGGATTCTAATAATGATTTTCATTCATTTTGTGATTAGGCACTACAAA
130 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * * *
967350 CACATTCTCTTCCA-TAGAATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTG
195 CACATTCTCCT-CATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG
* *
967414 CCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCTATTCTCGTAACAATC
259 CCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCAT-GATTCTCGTAACAGTC
* * * * * * * *
967479 TCCAATCATTTT-AAGTTTGGGAACCAAGAATACATTCCCTTTATTAAGATACATGGCGA-GGAT
323 TCCATTC-TTTTCAAGATTGGGAACAAAGAACACATTCCCTTCATTAGGATACATGAC-ATTGAT
* * * ** *
967542 GCTTTCGTGTCGCAA-AGAAAGGTTTTCCTTCTACTGTTTTTGATTGAATCAAAGTTTGTCTCTT
386 GCTTTGGTGTCGCAAGA-AAAGGTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTT
* *
967606 AAGTAAGACAAACGTGAATAGTCATA
450 AAATAAGACAAACATGAATAGTCATA
* * * * * * * * ***
967632 CTAATCCCCATTCTTCTCAGCATGAGGCGCCATAGACATAGTCTTGTCTTTAGGATAGGTGATAT
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
* * * * *
967697 TGATGCATTT-GTTTCAG-AAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTGTAAGTTCGTA
66 TGATGC-TTTGGTTT-TGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATG
* * * * * * * *
967760 CCACATATAAGACAAACATGGATTCTTGTAAGGAT-TTCATTGATTCTATGATTAGGCACTATAA
129 CCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
* * * *
967824 ACATATTCTCCTCATTAGAATAAAAGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTAG
194 ACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG
* * * * * *
967889 CCCCATTTTCCATAAAATCAAAATTCATCCCATAAATAAGACAAGCCCTGATTCTCGTAACAGTT
259 CCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAG-CATGATTCTCGTAACAGTC
* * * * * * * *
967954 TGCATTCCTTTCAAGATTGGGAAGCAAA-AGCACAATCCCTTCGTTACGATACCTGACATTGAAG
323 TCCATTCTTTTCAAGATTGGGAA-CAAAGAACACATTCCCTTCATTAGGATACATGACATTGATG
* * * * * * * *
968018 CTTTGGTGTCACGAG-AAAGCTTTTCTTTCAATCATTTTTGATTGAATCAAAGTTCGTGTCTTAA
387 CTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAA
* * *
968082 ATAAGACAAACATCAATACTCAGA
452 ATAAGACAAACATGAATAGTCATA
* * * * * *
968106 CTAATCCCCATTCTTTTCTGGATTAGGCATCATAAACCTTGTCTTCTTATAAGGATACACGATGT
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
* * *** *
968171 TGATGTTTTGATTTCAAAAGAACGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCC
66 TGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCC
* * * *
968236 TCAAATAAGACAACCATGGATTCTAATAATGATCTTCATTCATTTTGTGATTAGGGACTATAAAC
131 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAC
* *
968301 ACATTCTCCTCATTAGGATAAATGACATTGATGATTTTCTGTTGCATGGAAATCTTTTCTTTGCC
196 ACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
* *
968366 CTATTTTCCTTAAAATCAAAATCCATCCCTTAAATATGACAAGCATCGATTCTCG-AGACAGCCT
261 CTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCAT-GATTCTCGTA-ACAGTCT
** * * **
968430 CCATTCTCATCAAGATTGGGAACCAAGAATAGTTTCCCCTT-ATTAGGATACATGACATTGATGC
324 CCATTCTTTTCAAGATTGGGAACAAAGAACACATT-CCCTTCATTAGGATACATGACATTGATGC
* * * * * * *
968494 TTTGGGGTCACAAGAAAAGCTTTT-TTTCAACCATTTTTTATTGAATCAAAGTTTGTCTTTTAAA
388 TTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* * *
968558 TATGGCAAACATGAATACTCATA
453 TAAGACAAACATGAATAGTCATA
* * * *
968581 CTAATCCCCATTCTTTTCAAGATTAGGTACCATAAACATAGTCTTCTCTTAAGGATACACAATAT
1 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
*** * * * *
968646 TGATGCTTTGGTTTCATAAGAAAGGCTTTCTTCCC-CCTAATTTTTCTAACGTATAAGTTCGTGC
66 TGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACC-AATTTTTGTAAAGTCTAAGTTCATGC
* ** * *
968710 CTCAAATAAGACAAACATGGATTCTAGTAATGATCTTTGTTCATTTTGTGATTAGACA-GATAAA
130 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * * * *
968774 TA-GTTCTACTCGTTAGGATAAATGGTATTGATGATTTTCTTTTGCAT-GAAAT-TTTTCTTTGC
195 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
* * * * * **
968836 CCTATTTTCCTGAAAATCAAAATTCGTCTCTTAAATAAGACGAGCATCGATTCTCGTAACAACCT
260 CCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCAT-GATTCTCGTAACAGTCT
*
968901 CCATTCTTTTCTAGATTGGGAAC
324 CCATTCTTTTCAAGATTGGGAAC
968924 TGTAAACACT
Statistics
Matches: 9754, Mismatches: 1722, Indels: 485
0.82 0.14 0.04
Matches are distributed among these distances:
459 3 0.00
460 51 0.01
461 121 0.01
462 198 0.02
463 10 0.00
465 13 0.00
466 344 0.04
467 40 0.00
468 8 0.00
469 109 0.01
470 94 0.01
471 423 0.04
472 131 0.01
473 964 0.10
474 1964 0.20
475 2681 0.27
476 1335 0.14
477 309 0.03
478 671 0.07
479 190 0.02
480 77 0.01
481 18 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (475 bp):
CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
TGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCC
TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAC
ACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
CTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATGATTCTCGTAACAGTCTCC
ATTCTTTTCAAGATTGGGAACAAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT
GGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
GACAAACATGAATAGTCATA
Found at i:969069 original size:49 final size:48
Alignment explanation
Indices: 969014--969651 Score: 560
Period size: 49 Copynumber: 13.1 Consensus size: 48
969004 GACGAATTCA
*
969014 ATTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCATCTTC
1 ATTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTC
* * *
969062 AATTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--C
1 -ATTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTC
969108 --TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTC
1 ATTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTC
* * *
969154 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--C
1 AT-TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTC
*
969200 --TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTAGCATCTTC
1 ATTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTC
* * * * *
969246 ATCTTTATGTCCAATGTAGCTAGCCTTGAATCAGCACATTGGCA-C--C
1 AT-TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTC
* *
969292 --TTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCACCTTC
1 ATTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTC
* * *
969338 ATCTTTAAGTCCAATATCGCTAGCCTTGAATCAACATATTGGCACCTTC
1 AT-TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTC
* * * *
969387 AACTTTAAGTCCAATGTAGTTGGCCTTGAATCAGCATATTGGCA-C--C
1 -ATTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTC
* * *
969433 --TTTAAGTCCAATATAGTTGGCCTTGAATCAGCATATTGGCACCTTTTCC
1 ATTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA--TCTT-C
* * * * *
969482 ATCTTTAAGTTCAATGTTGCTGGCCTTGAATCAGCACATTGACATCTTTTTTCTC
1 AT-TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATC-----T-TC
* * * *
969537 ATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTC
1 AT-TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG---C---AT--C-TTC
* * *
969595 ATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTC
1 AT-TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTC
969644 ATCTTTAA
1 AT-TTTAA
969652 CATTCCTTAA
Statistics
Matches: 488, Mismatches: 59, Indels: 84
0.77 0.09 0.13
Matches are distributed among these distances:
43 150 0.31
44 3 0.01
46 7 0.01
48 4 0.01
49 204 0.42
50 3 0.01
52 36 0.07
55 36 0.07
56 1 0.00
58 39 0.08
59 2 0.00
61 2 0.00
63 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.16, T:0.34
Consensus pattern (48 bp):
ATTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTC
Found at i:969173 original size:92 final size:92
Alignment explanation
Indices: 969016--969478 Score: 661
Period size: 92 Copynumber: 5.0 Consensus size: 92
969006 CGAATTCAAT
*
969016 TTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCATCTTCAAT-TTTAAGTCCAATGTA
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTC-ATCTTTAAGTCCAATGTA
969080 GCTGGCCTTGAATCAGCACATTGGCACC
65 GCTGGCCTTGAATCAGCACATTGGCACC
969108 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAG
969173 CTGGCCTTGAATCAGCACATTGGCACC
66 CTGGCCTTGAATCAGCACATTGGCACC
* *
969200 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTAGCATCTTCATCTTTATGTCCAATGTAG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAG
*
969265 CTAGCCTTGAATCAGCACATTGGCACC
66 CTGGCCTTGAATCAGCACATTGGCACC
* * * *
969292 TTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATATCG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAG
* * *
969357 CTAGCCTTGAATCAACATATTGGCACCTTCAAC
66 CTGGCCTTGAATCAGCACATTGGCA----C--C
* * * *
969390 TTTAAGTCCAATGTAGTTGGCCTTGAATCAGCATATTGGCA----C--CTTTAAGTCCAATATAG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAG
* *
969449 TTGGCCTTGAATCAGCATATTGGCACC
66 CTGGCCTTGAATCAGCACATTGGCACC
969476 TTT
1 TTT
969479 TCCATCTTTA
Statistics
Matches: 346, Mismatches: 18, Indels: 20
0.90 0.05 0.05
Matches are distributed among these distances:
86 4 0.01
88 1 0.00
91 2 0.01
92 297 0.86
94 1 0.00
96 1 0.00
98 40 0.12
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (92 bp):
TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAG
CTGGCCTTGAATCAGCACATTGGCACC
Found at i:969272 original size:141 final size:135
Alignment explanation
Indices: 969016--969473 Score: 550
Period size: 141 Copynumber: 3.3 Consensus size: 135
969006 CGAATTCAAT
* * *
969016 TTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCATCTTCAATTTTAAGTCCAATGTAG
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATC-TC---TTTAAGTCCAATATCG
* * *
969081 CTGGCCTTGAATCAGCACATTGGCA---C-CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCAT
62 CTGGCCTTGAATCAGCATATTGGCACTTCACTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAT
969142 ATTGGCATCTTCATC
127 ATTGGCA----C--C
* *
969157 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C-CTTTAAGTCCAATATCGCTGG
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTCTTTAAGTCCAATATCGCTGG
* * * *
969220 CCTTGAATCAGCATATTAGCATCTTCATCTTTATGTCCAATGTAGCTAGCCTTGAATCAGCACAT
66 CCTTGAATCAGCATATTGGCA-CTTCA-CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATAT
969285 TGGCACC
129 TGGCACC
* *
969292 TTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATATCG
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA---TC-TCTTTAAGTCCAATATCG
* * *
969357 CTAGCCTTGAATCAACATATTGGCACCTTCAACTTTAAGTCCAATGTAGTTGGCCTTGAATCAGC
62 CTGGCCTTGAATCAGCATATTGGCA-CTTC-ACTTTAAGTCCAATGTAGCTGGCCTTGAATCAGC
969422 ATATTGGCACC
125 ATATTGGCACC
*
969433 TTTAAGTCCAATATAGTTGGCCTTGAATCAGCATATTGGCA
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
969474 CCTTTTCCAT
Statistics
Matches: 279, Mismatches: 25, Indels: 26
0.85 0.08 0.08
Matches are distributed among these distances:
135 75 0.27
137 1 0.00
138 1 0.00
139 2 0.01
140 1 0.00
141 198 0.71
142 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (135 bp):
TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTCTTTAAGTCCAATATCGCTGG
CCTTGAATCAGCATATTGGCACTTCACTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTG
GCACC
Found at i:969468 original size:22 final size:22
Alignment explanation
Indices: 969403--969468 Score: 52
Period size: 22 Copynumber: 3.0 Consensus size: 22
969393 AAGTCCAATG
969403 TAGTTGGCCTTGAATCAGC--A
1 TAGTTGGCCTTGAATCAGCATA
*
969423 TA-TTGGCACCTTTAAGTC--CAATA
1 TAGTTGG--CCTTGAA-TCAGC-ATA
969446 TAGTTGGCCTTGAATCAGCATA
1 TAGTTGGCCTTGAATCAGCATA
969468 T
1 T
969469 TGGCACCTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 16
0.66 0.04 0.30
Matches are distributed among these distances:
19 4 0.11
20 3 0.09
21 8 0.23
22 12 0.34
23 4 0.11
24 4 0.11
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (22 bp):
TAGTTGGCCTTGAATCAGCATA
Found at i:969619 original size:58 final size:55
Alignment explanation
Indices: 969432--969764 Score: 263
Period size: 58 Copynumber: 6.1 Consensus size: 55
969422 ATATTGGCAC
* * * * * *
969432 CTTTAAGTCCAATATAGTTGGCCTTGAATCAGCATATTGGCACCTTTTC---CAT
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGACATCTTTTCTTTCAT
* *
969484 CTTTAAGTTCAATGTTGCTGGCCTTGAATCAGCACATTGACATCTTTT-TTCTCAT
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGACATCTTTTCTT-TCAT
* * * * * * *
969539 CTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTCAT
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGACATCTTT-T--CTTTCAT
* * *
969597 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAACATT
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGACATCTT-TTCTTT--CA-T
* * * * *
969656 CCTTAA-CCCAATGTTGTTGGCCTTGAATCAGCATATTGACAT-TTTTC--TCAT
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGACATCTTTTCTTTCAT
* * * * *
969707 CTTTAAGTCTAATGTCGCTGACCGTGAAT-AGCGCATTGACATCCTTTT-TCTCAT
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGACAT-CTTTTCTTTCAT
969761 CTTT
1 CTTT
969765 GAACCCAATA
Statistics
Matches: 223, Mismatches: 41, Indels: 32
0.75 0.14 0.11
Matches are distributed among these distances:
51 17 0.08
52 59 0.26
53 4 0.02
54 9 0.04
55 41 0.18
56 7 0.03
57 2 0.01
58 76 0.34
59 8 0.04
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.38
Consensus pattern (55 bp):
CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGACATCTTTTCTTTCAT
Found at i:970285 original size:49 final size:47
Alignment explanation
Indices: 970231--970680 Score: 554
Period size: 49 Copynumber: 9.7 Consensus size: 47
970221 GACGAATTCA
*
970231 ATTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCATCTTC
1 ATTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CTTC
* *
970279 AATTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC--C
1 -ATTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACTTC
*
970325 --TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTC
1 ATTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CTTC
* *
970371 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC--C
1 AT-TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACTTC
* *
970417 --TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTAGCATCTTC
1 ATTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CTTC
* *
970463 ATCTTTAAGTCCAATATAGCTAGCCTTGAATCAGCACATTGGCAC--C
1 AT-TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACTTC
* *
970509 --TTTAAGTCCAATATCGCTGGCCTTGAATCAGTATATTGGCACCTTC
1 ATTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CTTC
* *
970555 ATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGTATATTGGCACCTTC
1 AT-TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CTTC
* *
970604 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC--C
1 AT-TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACTTC
970650 --TTTAAGTCCAATATAGCTGGCCTTGAATCAG
1 ATTTTAAGTCCAATATAGCTGGCCTTGAATCAG
970681 TATAATGGTT
Statistics
Matches: 357, Mismatches: 26, Indels: 42
0.84 0.06 0.10
Matches are distributed among these distances:
43 142 0.40
44 3 0.01
46 7 0.02
48 4 0.01
49 201 0.56
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (47 bp):
ATTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACTTC
Found at i:970390 original size:92 final size:92
Alignment explanation
Indices: 970233--970680 Score: 667
Period size: 92 Copynumber: 4.9 Consensus size: 92
970223 CGAATTCAAT
* *
970233 TTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCATCTTCAAT-TTTAAGTCCAATGTA
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTC-ATCTTTAAGTCCAATATA
970297 GCTGGCCTTGAATCAGCACATTGGCACC
65 GCTGGCCTTGAATCAGCACATTGGCACC
*
970325 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATATAG
970390 CTGGCCTTGAATCAGCACATTGGCACC
66 CTGGCCTTGAATCAGCACATTGGCACC
*
970417 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTAGCATCTTCATCTTTAAGTCCAATATAG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATATAG
*
970482 CTAGCCTTGAATCAGCACATTGGCACC
66 CTGGCCTTGAATCAGCACATTGGCACC
* * *
970509 TTTAAGTCCAATATCGCTGGCCTTGAATCAGTATATTGGCACCTTCATCTTTAAGTCCAATATCG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATATAG
* *
970574 CTGGCCTTGAATCAGTATATTGGCACCTTCATC
66 CTGGCCTTGAATCAGCACATTGGCA----C--C
* * *
970607 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCCAATATAG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATATAG
970666 CTGGCCTTGAATCAG
66 CTGGCCTTGAATCAG
970681 TATAATGGTT
Statistics
Matches: 333, Mismatches: 16, Indels: 14
0.92 0.04 0.04
Matches are distributed among these distances:
91 2 0.01
92 291 0.87
94 1 0.00
96 1 0.00
98 38 0.11
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (92 bp):
TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATATAG
CTGGCCTTGAATCAGCACATTGGCACC
Found at i:970684 original size:141 final size:139
Alignment explanation
Indices: 970233--970680 Score: 594
Period size: 141 Copynumber: 3.2 Consensus size: 139
970223 CGAATTCAAT
* * *
970233 TTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCATCTTCAAT-TTTAAGTCCAATGTA
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CTTC-ATCTTTAAGTCCAATATC
* *
970297 GCTGGCCTTGAATCAGCACATTGGCA---C--CTTTAAGTCCAATATCGCTGGCCTTGAATCAGC
64 GCTGGCCTTGAATCAGCATATTGGCACTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGC
*
970357 ATATTGGCATCTTCATC
129 ACATTGGCA----C--C
* *
970374 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA---C--CTTTAAGTCCAATATCGC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACTTCATCTTTAAGTCCAATATCGC
* *
970434 TGGCCTTGAATCAGCATATTAGCATCTTCATCTTTAAGTCCAATATAGCTAGCCTTGAATCAGCA
66 TGGCCTTGAATCAGCATATTGGCA-CTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCA
970499 CATTGGCACC
130 CATTGGCACC
* *
970509 TTTAAGTCCAATATCGCTGGCCTTGAATCAGTATATTGGCACCTTCATCTTTAAGTCCAATATCG
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CTTCATCTTTAAGTCCAATATCG
* *
970574 CTGGCCTTGAATCAGTATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGC
65 CTGGCCTTGAATCAGCATATTGGCA-CTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGC
970639 ACATTGGCACC
129 ACATTGGCACC
970650 TTTAAGTCCAATATAGCTGGCCTTGAATCAG
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAG
970681 TATAATGGTT
Statistics
Matches: 274, Mismatches: 20, Indels: 26
0.86 0.06 0.08
Matches are distributed among these distances:
135 75 0.27
137 2 0.01
139 2 0.01
141 195 0.71
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (139 bp):
TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACTTCATCTTTAAGTCCAATATCGC
TGGCCTTGAATCAGCATATTGGCACTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCAC
ATTGGCACC
Found at i:970910 original size:13 final size:13
Alignment explanation
Indices: 970892--970916 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
970882 CATAAAGTGT
970892 TGTATCGATACAA
1 TGTATCGATACAA
970905 TGTATCGATACA
1 TGTATCGATACA
970917 TAAGTGTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:970927 original size:32 final size:33
Alignment explanation
Indices: 970872--970937 Score: 125
Period size: 32 Copynumber: 2.0 Consensus size: 33
970862 TTCAATGATT
970872 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
970905 TGTATCGATACAT-AAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
970937 T
1 T
970938 TTAAGCTATT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 20 0.61
33 13 0.39
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Found at i:970996 original size:13 final size:13
Alignment explanation
Indices: 970978--971002 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
970968 ATTACTCAAA
970978 TGTATCGATACAT
1 TGTATCGATACAT
970991 TGTATCGATACA
1 TGTATCGATACA
971003 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:971056 original size:52 final size:50
Alignment explanation
Indices: 970991--971135 Score: 182
Period size: 52 Copynumber: 2.8 Consensus size: 50
970981 ATCGATACAT
* *
970991 TGTATCGATACACTGATCTTTGTATCGATACATGCAGACAAATTTGCCCAGA
1 TGTATCGATACACT-AT-TATGTATCGATACATGCAGACAAAATTGCCCAGA
* * * *
971043 TGTATTGATACACTATAAAATGTATCAATACATGCAGGCAAAATTGCCCAGA
1 TGTATCGATACACTAT--TATGTATCGATACATGCAGACAAAATTGCCCAGA
971095 TGTATCGATACACTATTAAATGTATCGATACATGCAGACAA
1 TGTATCGATACACTATT--ATGTATCGATACATGCAGACAA
971136 CTTTTCATAT
Statistics
Matches: 79, Mismatches: 11, Indels: 6
0.82 0.11 0.06
Matches are distributed among these distances:
51 2 0.03
52 77 0.97
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.29
Consensus pattern (50 bp):
TGTATCGATACACTATTATGTATCGATACATGCAGACAAAATTGCCCAGA
Found at i:976001 original size:952 final size:952
Alignment explanation
Indices: 972869--991771 Score: 34714
Period size: 952 Copynumber: 19.9 Consensus size: 952
972859 TTATTCCACC
* *
972869 AGGA-AAATGATATTGATGATTTTC-TTTCTGTGAAAATCTTTTCTTTTGTCTATTTCCCTTAAA
1 AGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAA
* *
972932 ATCAAAATTCATCCATTAAATACGGCAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTCTGAGA
66 ATCAAAATTCATCCATTAAATACGACAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTGAGA
*
972997 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACATAACATTGTTGTTTTGGTGTCACAAGAA
131 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAA
*
973062 AAGCTTTTCTTTCCACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAT
196 AAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAT
* * *
973127 AGTCATACAAATCCCCATTCATTCCGGGATTAGGCACCATAAACATAGTCTTCTCACTAGGATAC
261 AGTCATACAAATCCCCATTCATTTCAGGATTACGCACCATAAACATAGTCTTCTCACTAGGATAC
* * *
973192 AAGGTATTGACGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAACATTTGTAAAGTCTAAGT
326 AAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGT
*
973257 TCATGCCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACAC
391 TCATGCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACAC
* * *
973322 TATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTCGTTTGCATGGAAATTTCTT
456 TATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAATTTCCT
* *
973387 TTTTGCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCAATTCTTGTTT
521 TTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTT
* * * *
973452 TAGTCTCTATTCTTTTCGAGATTTAGAACCAAGAACACATTCCATTCATTAGGATACATTACATT
586 TAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTT
* * *
973517 GATTCTTTGGTTTCGCAAGAAAAGGTTTTCTTTTTGCACCATTTTCGATAGAATCAAAGTTCCTC
651 GATGCTTTGGTTTCGCAAGAAAAGGTTTTC--TTTCCACCGTTTTCGATAGAATCAAAGTTCCTC
* * * *
973582 TTTTAATTAAGACAAATATCAATAGTCTTATGAATCCCCATTTTTTTTCAGGATTAGGCACCATA
714 TCTTAATTAAGACAAACATGAATAGTCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACCATA
* **
973647 AACATAGTCTTCTCAGTGGGACAGACGATATTGATGCTTTAATATTGCAAGAAAGGCTTTCTTTC
779 AACATAGTCTTCTCAGTAGGACAGACGATATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTC
973712 CCCCAATTTTTACAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCT
844 CCCCAATTTTTACAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCT
*
973777 TCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACA
909 TCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
973821 AGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAA
1 AGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAA
* *
973886 ATCAAAATTCATGCATTAAATACGGCAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTGAGA
66 ATCAAAATTCATCCATTAAATACGACAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTGAGA
*
973951 TTATGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAA
131 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAA
* * * *
974016 AAGCTTTCCTTTGCACCATTTTTTATATAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAC
196 AAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAT
* * *
974081 AGTCATACAAATCCCCATTCATTTCGGGATTAGGCACCATAAACATAGTCTTCTCACTAAGATAC
261 AGTCATACAAATCCCCATTCATTTCAGGATTACGCACCATAAACATAGTCTTCTCACTAGGATAC
* * *
974146 AAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCAAGCAACTTTTGTCAAGTCTAAGT
326 AAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGT
*
974211 TCATGCCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACAC
391 TCATGCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACAC
* * *
974276 TATAAACACATTT-TCCGCATTAGGATAAATTATATTGATGATTTTTGCTTTCATTGAAATTTCC
456 TATAAACAC-TTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAATTTCC
* *
974340 TTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTAAAATATAACAACCATCGATTCTTGTT
520 TTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTT
974405 TTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCT
585 TTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCT
** * * *
974470 CAATGCTTTGGTTTCGCAAGAATAGGTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTCCTCT
650 TGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCT
974535 CTTAATTAAGACAAACATGAATAGTCTTACGAATCCCCATTTTGTTTTCAGGATTAGGCACCATA
715 CTTAATTAAGACAAACATGAATAGTCTTACGAATCCCCATTTT-TTTTCAGGATTAGGCACCATA
974600 AACATAGTCTTCTCAGTAGGACAGACGATATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTC
779 AACATAGTCTTCTCAGTAGGACAGACGATATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTC
974665 CCCCAATTTTTACAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCT
844 CCCCAATTTTTACAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCT
*
974730 TCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTGCT
909 TCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
* *
974774 AGGACAAATGATATTGATGATTTTCTTTTCCGTGCAAATCTTTTCTTTGGTTTATTTCCCTTAAA
1 AGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAA
*
974839 ATCAAAATTCATCCATTAAATACGGCAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTGAGA
66 ATCAAAATTCATCCATTAAATACGACAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTGAGA
974904 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAA
131 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAA
* **
974969 AAGCTTTTCTTTCCATCGCTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAT
196 AAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAT
*
975034 AGTCATACAAATCCCTATTCATTTCAGGATTACGCACCATAAACATAGTCTTCTCACTAGGATAC
261 AGTCATACAAATCCCCATTCATTTCAGGATTACGCACCATAAACATAGTCTTCTCACTAGGATAC
*
975099 AAGGTATTGACGCTTTGGTTTCGTAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGT
326 AAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGT
975164 TCATGCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACAC
391 TCATGCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACAC
975229 TATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAATTTCCT
456 TATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAATTTCCT
975294 TTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTT
521 TTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTT
975359 TAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTT
586 TAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTT
975424 GATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTC
651 GATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTC
975489 TTAATTAAGACAAACATGAATAGTCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAA
716 TTAATTAAGACAAACATGAATAGTCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAA
975554 CATAGTCTTCTCAGTAGGACAGACGATATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTCCC
781 CATAGTCTTCTCAGTAGGACAGACGATATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTCCC
* *
975619 CTAATTTTTGCAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTC
846 CCAATTTTTACAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTC
975684 ATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
911 ATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
* *
975726 AGGACAAATGATATTGATGATTTTCTTTTCCGTGCAAATCTTTTCTTTGGTTTATTTCCCTTAAA
1 AGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAA
*
975791 ATCAAAATTCATCCATTAAATACGGCAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTGAGA
66 ATCAAAATTCATCCATTAAATACGACAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTGAGA
975856 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAA
131 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAA
* *
975921 AAGCTTTTCTTTCCATCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAT
196 AAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAT
*
975986 AGTCATACAAATCCCTATTCATTTCAGGATTACGCACCATAAACATAGTCTTCTCACTAGGATAC
261 AGTCATACAAATCCCCATTCATTTCAGGATTACGCACCATAAACATAGTCTTCTCACTAGGATAC
976051 AAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGT
326 AAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGT
976116 TCATGCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACAC
391 TCATGCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACAC
976181 TATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAATTTCCT
456 TATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAATTTCCT
976246 TTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTT
521 TTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTT
976311 TAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTT
586 TAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTT
976376 GATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTC
651 GATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTC
*
976441 TTAATTAAGACAAACATGAATAGTCATACGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAA
716 TTAATTAAGACAAACATGAATAGTCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAA
976506 CATAGTCTTCTCAGTAGGACAGACGATATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTCCC
781 CATAGTCTTCTCAGTAGGACAGACGATATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTCCC
* *
976571 CTAATTTTTGCAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTC
846 CCAATTTTTACAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTC
976636 ATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
911 ATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
976678 AGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAA
1 AGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAA
* *
976743 ATCAAAATTCATCCATTAAATACGACAAGCATAGATTCTCATAAGAGTCTCCCTGTTTTTTGAGA
66 ATCAAAATTCATCCATTAAATACGACAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTGAGA
*
976808 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACTTGACATTGTTGTTTTGGTGTCACAAGAA
131 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAA
976873 AAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAT
196 AAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAT
*
976938 AGTCATACAAATCCCCATTCATTTCATGATTACGCACCATAAACATAGTCTTCTCACTAGGATAC
261 AGTCATACAAATCCCCATTCATTTCAGGATTACGCACCATAAACATAGTCTTCTCACTAGGATAC
977003 AAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGT
326 AAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGT
977068 TCATGCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACAC
391 TCATGCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACAC
977133 TATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAATTTCCT
456 TATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAATTTCCT
977198 TTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTT
521 TTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTT
977263 TAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTT
586 TAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTT
*
977328 GATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTT
651 GATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTC
*
977393 TTAATTAAGACAAACATGAATAGTCTTACGAATCCCCATTTTTTTTTTAGGATTAGGCACCATAA
716 TTAATTAAGACAAACATGAATAGTCTTACGAATCCCCA-TTTTTTTTCAGGATTAGGCACCATAA
977458 ACATAGTCTTCTCAGTAGGACAGACGATATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTCC
780 ACATAGTCTTCTCAGTAGGACAGACGATATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTCC
* *
977523 CCTAATTTTTGCAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTT
845 CCCAATTTTTACAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTT
977588 CATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
910 CATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
* *
977631 AGGACAAATGATATTGATGATTTTCTTTTCCGTGCAAATCTTTTCTTTGGTTTATTTCCCTTAAA
1 AGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAA
* *
977696 ATAAAAATTCATCCATTAAATACGGCAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTGAGA
66 ATCAAAATTCATCCATTAAATACGACAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTGAGA
977761 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAA
131 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAA
* *
977826 AAGCTTTTCTTTCCATCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAT
196 AAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAT
* *
977891 AGTCATACAAATCCCTATTCATTTCAGGATTAAGCACCATAAACATAGTCTTCTCACTAGGATAC
261 AGTCATACAAATCCCCATTCATTTCAGGATTACGCACCATAAACATAGTCTTCTCACTAGGATAC
977956 AAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGT
326 AAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGT
978021 TCATGCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACAC
391 TCATGCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACAC
978086 TATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAATTTCCT
456 TATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAATTTCCT
978151 TTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTT
521 TTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTT
978216 TAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTT
586 TAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTT
978281 GATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTC
651 GATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTC
978346 TTAATTAAGACAAACATGAATAGTCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAA
716 TTAATTAAGACAAACATGAATAGTCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAA
978411 CATAGTCTTCTCAGTAGGACAGACGATATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTCCC
781 CATAGTCTTCTCAGTAGGACAGACGATATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTCCC
* *
978476 CTAATTTTTGCAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTC
846 CCAATTTTTACAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTC
978541 ATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
911 ATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
978583 AGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAA
1 AGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAA
* * *
978648 ATCAAAATTCATCCATTAAATACGACAAGCATAGATTCTCAAAAGAGTCTCCCTGTTTTTTGAGA
66 ATCAAAATTCATCCATTAAATACGACAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTGAGA
*
978713 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACTTGACATTGTTGTTTTGGTGTCACAAGAA
131 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAA
978778 AAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAT
196 AAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAT
*
978843 AGTCATACAAATCCCCATTCATTTCATGATTACGCACCATAAACATAGTCTTCTCACTAGGATAC
261 AGTCATACAAATCCCCATTCATTTCAGGATTACGCACCATAAACATAGTCTTCTCACTAGGATAC
978908 AAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGT
326 AAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGT
978973 TCATGCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACAC
391 TCATGCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACAC
979038 TATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAATTTCCT
456 TATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAATTTCCT
979103 TTTTCCCCTATTTTTCTC-AAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTT
521 TTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTT
979167 TAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTT
586 TAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTT
*
979232 GATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCG-TTTCGATAGAATCAAAGTTCCTCTT
651 GATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTC
*
979296 TTAATTAAGACAAACATGAATAGTCTTACGAATCCCCATTTTTTTTTTAGGATTAGGCACCATAA
716 TTAATTAAGACAAACATGAATAGTCTTACGAATCCCCA-TTTTTTTTCAGGATTAGGCACCATAA
979361 ACATAGTCTTCTCAGTAGGACAGACGATATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTCC
780 ACATAGTCTTCTCAGTAGGACAGACGATATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTCC
979426 CCCAATTTTTACAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTT
845 CCCAATTTTTACAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTT
979491 CATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
910 CATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
979534 AGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAA
1 AGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAA
*
979599 ATCAAAATTCATCCATTAAATACGACAAGCATCGATTCTCATAAGAGTCTCCCTGTTTTTTGAGA
66 ATCAAAATTCATCCATTAAATACGACAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTGAGA
*
979664 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACTTGACATTGTTGTTTTGGTGTCACAAGAA
131 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAA
979729 AAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAT
196 AAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAT
* *
979794 AGTCATACGAATCCCCATTCATTTCACGATTACGCACCATAAACATAGTCTTCTCACTAGGATAC
261 AGTCATACAAATCCCCATTCATTTCAGGATTACGCACCATAAACATAGTCTTCTCACTAGGATAC
979859 AAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGT
326 AAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGT
979924 TCATGCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACAC
391 TCATGCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACAC
979989 TATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAATTT-CT
456 TATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAATTTCCT
**
980053 TTTTTGCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTT
521 TTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTT
* * *
980118 TAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCATTCATTAGGATACATTACATT
586 TAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTT
*
980183 GATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTCCTCTC
651 GATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTC
* * *
980248 TTAATTAAGACAAATATCAATAGTCTTACGAATCCCCATTTTTTTTCAGGATTCGGCACCATAAA
716 TTAATTAAGACAAACATGAATAGTCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAA
* **
980313 CATAGTCTTCTCAGTGGGACAGACGATATTGATGCTTTAATATTGCAAGAAAGGCTTTCTTTCCC
781 CATAGTCTTCTCAGTAGGACAGACGATATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTCCC
* *
980378 CCAATTTTTACAAACTGTTAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTT
846 CCAATTTTTACAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTC
980443 ATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
911 ATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
980485 AGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAA
1 AGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAA
* * *
980550 ATCAAAATTCATGCATTAAATACGGCAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTTAGA
66 ATCAAAATTCATCCATTAAATACGACAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTGAGA
980615 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAA
131 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAA
* * * *
980680 AAGCTTTCCTTTGCACCATTTTTTATATAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAC
196 AAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAT
* * * *
980745 AGTCATACAAATCCCCATTCATTTCGGGATTAGGCACCATAAACATAGTATTCTCACTAAGATAC
261 AGTCATACAAATCCCCATTCATTTCAGGATTACGCACCATAAACATAGTCTTCTCACTAGGATAC
* *
980810 AAGGTATTGATGCTTTGGTTTCTCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGT
326 AAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGT
* *
980875 TCATCCCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACAC
391 TCATGCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACAC
* *
980940 TATAAACACATTT-TCCGCATTAGGATAAATTATATTGATGATTTTTGCTTGCATTGAAATTTCC
456 TATAAACAC-TTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAATTTCC
981004 TTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTT
520 TTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTT
981069 TTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCT
585 TTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCT
981134 TGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCT
650 TGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCT
* *
981199 TTTAATTAAGACAAACATGAATAGTCTTACGAATCCCCATTTTTTTTTTAGGATTAGGCACCATA
715 CTTAATTAAGACAAACATGAATAGTCTTACGAATCCCCA-TTTTTTTTCAGGATTAGGCACCATA
981264 AACATAGTCTTCTCAGTAGGACAGACGATATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTC
779 AACATAGTCTTCTCAGTAGGACAGACGATATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTC
981329 CCCCAATTTTTACAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCT
844 CCCCAATTTTTACAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCT
981394 TCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
909 TCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
981438 AGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAA
1 AGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAA
* *
981503 ATCAAAATTCATCCATTAAATACGACAAGCATAGATTCTCATAAGAGTCTCCCTGTTTTTTGAGA
66 ATCAAAATTCATCCATTAAATACGACAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTGAGA
*
981568 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACTTGACATTGTTGTTTTGGTGTCACAAGAA
131 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAA
981633 AAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAT
196 AAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAT
*
981698 AGTCATACAAATCCCCATTCATTTCATGATTACGCACCATAAACATAGTCTTCTCACTAGGATAC
261 AGTCATACAAATCCCCATTCATTTCAGGATTACGCACCATAAACATAGTCTTCTCACTAGGATAC
981763 AAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTTCCCAGCAACTTTTGTAAAGTCTAAG
326 AAGGTATTGACGCTTTGGTTTCGCAAGAAAGGC-TTTTTTCCCAGCAACTTTTGTAAAGTCTAAG
981828 TTCATGCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACA
390 TTCATGCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACA
981893 CTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAATTTCC
455 CTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAATTTCC
981958 TTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTT
520 TTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTT
982023 TTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCT
585 TTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCT
982088 TGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCT
650 TGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCT
* *
982153 TTTAATTAAGACAAACATGAATAGTCTTACGAATCCCCATTTTTTTTTTAGGATTAGGCACCATA
715 CTTAATTAAGACAAACATGAATAGTCTTACGAATCCCCA-TTTTTTTTCAGGATTAGGCACCATA
982218 AACATAGTCTTCTCAGTAGGACAGACGATATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTC
779 AACATAGTCTTCTCAGTAGGACAGACGATATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTC
982283 CCCCAATTTTTACAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCT
844 CCCCAATTTTTACAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCT
982348 TCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
909 TCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
982392 AGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAA
1 AGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAA
*
982457 ATCAAAATTCATCCATTAAATACGACAAGCATCGATTCTCATAAGAGTCTCCCTGTTTTTTGAGA
66 ATCAAAATTCATCCATTAAATACGACAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTGAGA
*
982522 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACTTGACATTGTTGTTTTGGTGTCACAAGAA
131 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAA
982587 AAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAT
196 AAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAT
* *
982652 AGTCATACGAATCCCCATTCATTTCACGATTACGCACCATAAACATAGTCTTCTCACTAGGATAC
261 AGTCATACAAATCCCCATTCATTTCAGGATTACGCACCATAAACATAGTCTTCTCACTAGGATAC
982717 AAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGT
326 AAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGT
982782 TCATGCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACAC
391 TCATGCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACAC
*
982847 TATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAATTTCTT
456 TATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAATTTCCT
*
982912 TTTTGCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTT
521 TTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTT
* * *
982977 TAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCATTCATTAGGATACATTACATT
586 TAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTT
*
983042 GATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTCCTCTC
651 GATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTC
* *
983107 TTAATTAAGACAAATATCAATAGTCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAA
716 TTAATTAAGACAAACATGAATAGTCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAA
* * *
983172 CATAGACTTCTCAGTGGGACAGACGATATTGATGCTTTAATATCGCAAGAAAGGCTTTCTTTCCC
781 CATAGTCTTCTCAGTAGGACAGACGATATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTCCC
* *
983237 CCAATTTTTACAAACTGTTAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTT
846 CCAATTTTTACAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTC
983302 ATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
911 ATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
983344 AGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAA
1 AGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAA
* * *
983409 ATCAAAATTCATGCATTAAATACGGCAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTTAGA
66 ATCAAAATTCATCCATTAAATACGACAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTGAGA
983474 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAA
131 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAA
* * * *
983539 AAGCTTTCCTTTGCACCATTTTTTATATAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAC
196 AAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAT
* * * *
983604 AGTCATACAAATCCCCATTCATTTCGGGATTAGGCACCATAAACATAGTATTCTCACTAAGATAC
261 AGTCATACAAATCCCCATTCATTTCAGGATTACGCACCATAAACATAGTCTTCTCACTAGGATAC
* *
983669 AAGGTATTGATGCTTTGGTTTCTCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGT
326 AAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGT
* *
983734 TCATCCCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACAC
391 TCATGCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACAC
* *
983799 TATAAACACATTT-TCCGCATTAGGATAAATTATATTGATGATTTTTGCTTGCATTGAAATTTCC
456 TATAAACAC-TTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAATTTCC
983863 TTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTT
520 TTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTT
983928 TTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCT
585 TTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCT
983993 TGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCT
650 TGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCT
984058 CTTAATTAAGACAAACATGAATAGTCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACCATAA
715 CTTAATTAAGACAAACATGAATAGTCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACCATAA
984123 ACATAGTCTTCTCAGTAGGACAGACGATATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTCC
780 ACATAGTCTTCTCAGTAGGACAGACGATATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTCC
* * *
984188 CCTAATTTTTGCAAATTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTT
845 CCCAATTTTTACAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTT
984253 CATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
910 CATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
984296 AGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAA
1 AGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAA
* * * *
984361 ATCAAAATTCATCCAATAAATATGACAAGCATAGATTCTCATAAGAGTCTCCCTGTTTTTTGAGA
66 ATCAAAATTCATCCATTAAATACGACAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTGAGA
*
984426 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACTTGACATTGTTGTTTTGGTGTCACAAGAA
131 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAA
984491 AAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAT
196 AAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAT
*
984556 AGTCATACAAATCCCCATTCATTTCATGATTACGCACCATAAACATAGTCTTCTCACTAGGATAC
261 AGTCATACAAATCCCCATTCATTTCAGGATTACGCACCATAAACATAGTCTTCTCACTAGGATAC
984621 AAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGT
326 AAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGT
984686 TCATGCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACAC
391 TCATGCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACAC
984751 TATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAATTTCCT
456 TATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAATTTCCT
984816 TTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTT
521 TTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTT
984881 TAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTT
586 TAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTT
*
984946 GATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTT
651 GATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTC
*
985011 TTAATTAAGACAAACATGAATAGTCTTACGAATCCCCATTTTTTTTTTAGGATTAGGCACCATAA
716 TTAATTAAGACAAACATGAATAGTCTTACGAATCCCCA-TTTTTTTTCAGGATTAGGCACCATAA
985076 ACATAGTCTTCTCAGTAGGACAGACGATATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTCC
780 ACATAGTCTTCTCAGTAGGACAGACGATATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTCC
985141 CCCAATTTTTACAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTT
845 CCCAATTTTTACAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTT
985206 CATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
910 CATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
985249 AGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAA
1 AGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAA
*
985314 ATCAAAATTCATCCATTAAATACGACAAGCATCGATTCTCATAAGAGTCTCCCTGTTTTTTGAGA
66 ATCAAAATTCATCCATTAAATACGACAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTGAGA
*
985379 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACTTGACATTGTTGTTTTGGTGTCACAAGAA
131 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAA
985444 AAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAT
196 AAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAT
* *
985509 AGTCATACGAATCCCCATTCATTTCACGATTACGCACCATAAACATAGTCTTCTCACTAGGATAC
261 AGTCATACAAATCCCCATTCATTTCAGGATTACGCACCATAAACATAGTCTTCTCACTAGGATAC
985574 AAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGT
326 AAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGT
985639 TCATGCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACAC
391 TCATGCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACAC
*
985704 TATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAATTTCTT
456 TATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAATTTCCT
*
985769 TTTTGCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTT
521 TTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTT
* * *
985834 TAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCATTCATTAGGATACATTACATT
586 TAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTT
*
985899 GATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTCCTCTC
651 GATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTC
* *
985964 TTAATTAAGACAAATATCAATAGTCTTACGAATCCCCATTTTTTTTTCAGGATTAGGCACCATAA
716 TTAATTAAGACAAACATGAATAGTCTTACGAATCCCCA-TTTTTTTTCAGGATTAGGCACCATAA
* **
986029 ACATAGTCTTCTCAGTGGGACAGACGATATTGATGCTTTAATATTGCAAGAAAGGCTTTCTTTCC
780 ACATAGTCTTCTCAGTAGGACAGACGATATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTCC
*
986094 CCCAATTTTTACAAACTGTTAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTT
845 CCCAATTTTTACAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTT
*
986159 TATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
910 CATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
986202 AGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAA
1 AGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAA
* * *
986267 ATCAAAATTCATGCATTAAATACGGCAAGCATCGATTCTCATAAGAGTCTCCATTTTTTTTGAGA
66 ATCAAAATTCATCCATTAAATACGACAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTGAGA
986332 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAA
131 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAA
* * * *
986397 AAGCTTTCCTTTGCACCATTTTTTATATAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAC
196 AAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAT
* * *
986462 AGTCATACAAATCCCCATTCATTTCGGGATTAGGCACCATAAACATAGTCTTCTCACTAAGATAC
261 AGTCATACAAATCCCCATTCATTTCAGGATTACGCACCATAAACATAGTCTTCTCACTAGGATAC
* *
986527 AAGGTATTGATGCTTTGGTTTCTCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGT
326 AAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGT
* * *
986592 TCATCCCTAAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACAC
391 TCATGCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACAC
* *
986657 TATAAACACATTT-TCCGCATTAGGATAAATTATATTGATGATTTTTGCTTGCATTGAAATTTCC
456 TATAAACAC-TTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAATTTCC
986721 TTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTT
520 TTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTT
986786 TTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCT
585 TTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCT
*
986851 TGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACTGTTTTCGATAGAATCAAAGTTCCTCT
650 TGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCT
* * * *
986916 TTTAATTAAGACAAATATCAATAGTCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACCGTAA
715 CTTAATTAAGACAAACATGAATAGTCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACCATAA
* **
986981 ACATAGTCTTCTCAGTGGGACAGACGATATTGATGCTTTAATATTGCAAGAAAGGCTTTCTTTCC
780 ACATAGTCTTCTCAGTAGGACAGACGATATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTCC
*
987046 CCCAATTTTTACAAACTGTTAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTT
845 CCCAATTTTTACAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTT
987111 CATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
910 CATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
987154 AGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAA
1 AGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAA
*
987219 ATCAAAATTCATCCATTAAATACGACAAGCATCGATTCTCATAAGAGTCTCCCTGTTTTTTGAGA
66 ATCAAAATTCATCCATTAAATACGACAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTGAGA
*
987284 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACTTGACATTGTTGTTTTGGTGTCACAAGAA
131 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAA
987349 AAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAT
196 AAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAT
*
987414 AGTCATACAAATCCCCATTCATTTCACGATTACGCACCATAAACATAGTCTTCTCACTAGGATAC
261 AGTCATACAAATCCCCATTCATTTCAGGATTACGCACCATAAACATAGTCTTCTCACTAGGATAC
987479 AAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGT
326 AAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGT
*
987544 TCATGCCTTAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACAC
391 TCATGCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACAC
*
987609 TATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAATTTCTT
456 TATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAATTTCCT
* *
987674 TTTTGCCCTATTTTTCTCAAAATGAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTT
521 TTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTT
* * *
987739 TAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCATTCATTAGGATACATTACATT
586 TAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTT
*
987804 GATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTCCTCTC
651 GATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTC
* *
987869 TTAATTAAGACAAATATCAATAGTCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAA
716 TTAATTAAGACAAACATGAATAGTCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAA
* **
987934 CATAGTCTTCTCAGTGGGACAGACGATATTGATGCTTTAATATTGCAAGAAAGGCTTTCTTTCCC
781 CATAGTCTTCTCAGTAGGACAGACGATATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTCCC
*
987999 CCAATTTTTACAAACTGTTAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTC
846 CCAATTTTTACAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTC
988064 ATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
911 ATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
*
988106 AGGACAAATGATATTGATGATTTTCTTTTTCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAA
1 AGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAA
*
988171 ATCAAAATTCATCCATTAAATACGACAAGCATCGATTCTCATAAGAGTCTCCCTGTTTTTTGAGA
66 ATCAAAATTCATCCATTAAATACGACAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTGAGA
*
988236 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACTTGACATTGTTGTTTTGGTGTCACAAGAA
131 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAA
*
988301 AAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACATAAAT
196 AAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAT
*
988366 AGTCATACAAATCCACATTCATTTCAGGATTACGCACCATAAACATAGTCTTCTCACTAGGATAC
261 AGTCATACAAATCCCCATTCATTTCAGGATTACGCACCATAAACATAGTCTTCTCACTAGGATAC
988431 AAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGT
326 AAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGT
988496 TCATGCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACAC
391 TCATGCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACAC
* *
988561 TATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCTTGGAAATTTCTT
456 TATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAATTTCCT
*
988626 TTTTTCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTT
521 TTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTT
988691 TAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTT
586 TAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTT
988756 GATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTC
651 GATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTC
* *
988821 TTAATTAAGACAAATATCAATAGTCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAA
716 TTAATTAAGACAAACATGAATAGTCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAA
* **
988886 CATAGTCTTCTCAGTGGGACAGACGATATTGATGCTTTAATATTGCAAGAAAGGCTTTCTTTCCC
781 CATAGTCTTCTCAGTAGGACAGACGATATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTCCC
988951 CCAATTTTTACAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTC
846 CCAATTTTTACAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTC
989016 ATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
911 ATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
989058 AGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAA
1 AGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAA
* * *
989123 ATCAAAATTCATGCATTAAATACGGCAAGCATCGATTCTCATAAGAGTCTACCTTTTTTTTGAGA
66 ATCAAAATTCATCCATTAAATACGACAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTGAGA
989188 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAA
131 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAA
* * * *
989253 AAGCTTTCCTTTGCACCATTTTTTATATAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAC
196 AAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAT
* * *
989318 AGTCATACAAATCCCCATTCATTTCGGGATTAGGCACCATAAACATAGTCTTCTCACTAAGATAC
261 AGTCATACAAATCCCCATTCATTTCAGGATTACGCACCATAAACATAGTCTTCTCACTAGGATAC
*
989383 AAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGT
326 AAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGT
989448 TCATGCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACAC
391 TCATGCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACAC
*
989513 TATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCTTGGAAATTT-CT
456 TATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAATTTCCT
*
989577 TTTTTCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTT
521 TTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTT
989642 TAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTT
586 TAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTT
989707 GATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTC
651 GATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTC
* *
989772 TTAATTAAGACAAATATCAATAGTCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAA
716 TTAATTAAGACAAACATGAATAGTCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAA
* **
989837 CATAGTCTTCTCAGTGGGACAGACGATATTGATGCTTTAATATTGCAAGAAAGGCTTTCTTTCCC
781 CATAGTCTTCTCAGTAGGACAGACGATATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTCCC
*
989902 CCAATTTTTACAAACTGTTAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTC
846 CCAATTTTTACAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTC
989967 ATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
911 ATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
* *
990009 AGGGCAAATGATATTGATGATTTTCTTTTTCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAA
1 AGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAA
*
990074 ATCAAAATTCATCCATTAAATACGACAAGCATCGATTCTCATAAGAGTCTCCCTATTTTTTGAGA
66 ATCAAAATTCATCCATTAAATACGACAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTGAGA
*
990139 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACTTGACATTGTTGTTTTGGTGTCACAAGAA
131 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAA
990204 AAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAT
196 AAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAT
*
990269 AGTCATACAAATCCACATTCATTTCAGGATTACGCACCATAAACATAGTCTTCTCACTAGGATAC
261 AGTCATACAAATCCCCATTCATTTCAGGATTACGCACCATAAACATAGTCTTCTCACTAGGATAC
*
990334 AAGGTATTGACACTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGT
326 AAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGT
990399 TCATGCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACAC
391 TCATGCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACAC
*
990464 TATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAATTTCTT
456 TATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAATTTCCT
* *
990529 TTTTGCCCTATTTTTCTCAAAATGAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTT
521 TTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTT
* * *
990594 TAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCATTCATTAGGATACATTACATT
586 TAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTT
*
990659 GATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTCCTCTC
651 GATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTC
* * *
990724 TTAATTAAGACAAATATCAATAGTCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACTATAAA
716 TTAATTAAGACAAACATGAATAGTCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAA
* *
990789 CATAGTCTTCTCAGTGGGACAGACGATATTGATGGTTTAATATCACAAGAAAGGCTTTCTTTCCC
781 CATAGTCTTCTCAGTAGGACAGACGATATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTCCC
990854 CCAATTTTTACAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTC
846 CCAATTTTTACAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTC
990919 ATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
911 ATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
990961 AGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAA
1 AGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAA
*
991026 ATCAAAATTCATGCATTAAATACGACAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTGAGA
66 ATCAAAATTCATCCATTAAATACGACAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTGAGA
991091 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAA
131 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAA
* * * *
991156 AAGCTTTCCTTTGCACCATTTTTTATATAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAC
196 AAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAT
* * *
991221 AGTCATACAAATCCCCATTCATTTCGGGATTAGGCACCATAAACATAGTCTTCTCACTAAGATAC
261 AGTCATACAAATCCCCATTCATTTCAGGATTACGCACCATAAACATAGTCTTCTCACTAGGATAC
*
991286 AAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGT
326 AAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGT
* * *
991351 TCATCCCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTTATTTTGTGATTAGACAC
391 TCATGCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACAC
* * *
991416 TATAAACACATTT-TCCGCATGAGGATAAATTATATTGATGATTTTTGCTTGCATTGAAATTTCC
456 TATAAACAC-TTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAATTTCC
*
991480 TTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTAAAATATAACAAGCATCGATTCTTGTT
520 TTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTT
*
991545 TTAGTCTCTATTCGTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCT
585 TTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCT
*
991610 TGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACTGTTTTCGATAGAATCAAAGTTCCTCT
650 TGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCT
*
991675 CTTAATTAAGACAAACATGAATAGTCTTACGAATCCCCATTTTTTTTTCAAGATTAGGCACCATA
715 CTTAATTAAGACAAACATGAATAGTCTTACGAATCCCCA-TTTTTTTTCAGGATTAGGCACCATA
991740 AACATAGTCTTCTCAGTAGGACAGACGATATT
779 AACATAGTCTTCTCAGTAGGACAGACGATATT
991772 AGGCACTATA
Statistics
Matches: 17460, Mismatches: 469, Indels: 43
0.97 0.03 0.00
Matches are distributed among these distances:
950 80 0.00
951 2626 0.15
952 8492 0.49
953 4701 0.27
954 1558 0.09
955 3 0.00
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.36
Consensus pattern (952 bp):
AGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAA
ATCAAAATTCATCCATTAAATACGACAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTGAGA
TTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAA
AAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAT
AGTCATACAAATCCCCATTCATTTCAGGATTACGCACCATAAACATAGTCTTCTCACTAGGATAC
AAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGT
TCATGCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACAC
TATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAATTTCCT
TTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTT
TAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTT
GATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTC
TTAATTAAGACAAACATGAATAGTCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAA
CATAGTCTTCTCAGTAGGACAGACGATATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTCCC
CCAATTTTTACAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTC
ATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
Found at i:992547 original size:838 final size:837
Alignment explanation
Indices: 990931--992608 Score: 3054
Period size: 838 Copynumber: 2.0 Consensus size: 837
990921 TCATTTTGTG
*
990931 ATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGA
1 ATTAGGCACTATAAACACAATCCCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGA
*
990996 AAATCTTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATGCATTAAATACGACAAGCATCGA
66 AAATCTTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATGCATTAAATACGACAAACATCGA
991061 TTCTCATAAGAGTCTCCCTTTTTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATA
131 TTCTCATAAGAGTCTCCCTTTTTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATA
* *
991126 CATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTCCTTTGCACCATTTTTTATATAATCAAA
196 CATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTCCTTTCCACCATTTTTTATAGAATCAAA
* * *
991191 GTTTGTCTCTTAAATAACACAAACTTAAACAGTCATACAAATCCCCATTCATTTCGGGATTAGGC
261 GTTTGTCTCTTAAATAACAAAAACTTAAACAGTCATACAAATCCCCATTCATTTCAGGATTACGC
*
991256 ACCATAAACATAGTCTTCTCACTAAGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTT
326 ACCATAAACATAGTCTTCTCACTAAGATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTT
991321 TTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATCCCTCAAATGAGACAATCATGGATTCTAGTA
391 TTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATCCCTCAAATGAGACAATCATGGATTCTAGTA
* *
991386 AGGATCTTCATTTATTTTGTGATTAGACACTATAAACACATTTTCCGCATGAGGATAAATTATAT
456 AGGATCTTCATTCATTTTGTGATTAGACACTATAAACACATTTTCCGCATGAGGATAAATGATAT
*
991451 TGATGATTTTTGCTTGCATTGAAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCC
521 TGATGATTTTTGCTTGCATGGAAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCC
991516 CTAAAATATAACAAGCATCGATTCTTGTTTTAGTCTCTATTCGTTTCGAGATTTGGAACCAAGAA
586 CTAAAATATAACAAGCATCGATTCTTGTTTTAGTCTCTATTCGTTTCGAGATTTGGAACCAAGAA
*
991581 CACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCC
651 CACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTTTCGCAAGAAAAGGTTTCCTTTCC
*
991646 ACTGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACATGAATAGTCTTACGAATCC
716 ACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACATGAATAGTCTTACGAATCC
991711 CCATTTTTTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCAGTAGGACAGACGAT
781 CCA-TTTTTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCAGTAGGACAGACGAT
*
991769 ATTAGGCACTATAAACACAATCCCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGC
1 ATTAGGCACTATAAACACAATCCCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGA
* *
991834 AAATCTTTTCTTTGGTTTATTTCCCTTAAAATCAAAATTCAT-CTATTAAATACGGCAAACATCG
66 AAATCTTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATGC-ATTAAATACGACAAACATCG
991898 ATTCTCATAAGAGTCTCCCTTTTTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAAT
130 ATTCTCATAAGAGTCTCCCTTTTTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAAT
* * *
991963 ACATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCATCGTTTTTTATAGAATCAA
195 ACATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTCCTTTCCACCATTTTTTATAGAATCAA
* *
992028 AGTTTGTCTCTTAAATAACAAAAACTTAAATAGTCATACAAATCCCTATTCATTTCAGGATTACG
260 AGTTTGTCTCTTAAATAACAAAAACTTAAACAGTCATACAAATCCCCATTCATTTCAGGATTACG
*
992093 CACCATAAACATAGTCTTCTCACTAGGATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCT
325 CACCATAAACATAGTCTTCTCACTAAGATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCT
* *
992158 TTTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAATTATGGATTCTAGT
390 TTTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATCCCTCAAATGAGACAATCATGGATTCTAGT
* *
992223 AAGGATCTTCATTCATTTTGTGATTAGACACTGTAAACAC-TTTCTCCGCATTAGGATAAATGAT
455 AAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACATTT-TCCGCATGAGGATAAATGAT
992287 ATTGATGATTTTTGCTTGCATGGAAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCAT
519 ATTGATGATTTTTGCTTGCATGGAAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCAT
* *
992352 CCCTTAAATATAACAAGCATCGATTCTTGTTTTAGTCTCTATTCTTTTCGAGATTTGGAACCAAG
584 CCCTAAAATATAACAAGCATCGATTCTTGTTTTAGTCTCTATTCGTTTCGAGATTTGGAACCAAG
992417 AACACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTTTCGCAAGAAAAGGTTTCCTTT
649 AACACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTTTCGCAAGAAAAGGTTTCCTTT
992482 CCACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACATGAATAGTCTTACGAAT
714 CCACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACATGAATAGTCTTACGAAT
*
992547 CCCCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGTAGGACAGACGAT
779 CCCCATTTTTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCAGTAGGACAGACGAT
992606 ATT
1 ATT
992609 GATGCTTTAA
Statistics
Matches: 809, Mismatches: 29, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
837 60 0.07
838 749 0.93
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (837 bp):
ATTAGGCACTATAAACACAATCCCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGA
AAATCTTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATGCATTAAATACGACAAACATCGA
TTCTCATAAGAGTCTCCCTTTTTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATA
CATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTCCTTTCCACCATTTTTTATAGAATCAAA
GTTTGTCTCTTAAATAACAAAAACTTAAACAGTCATACAAATCCCCATTCATTTCAGGATTACGC
ACCATAAACATAGTCTTCTCACTAAGATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTT
TTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATCCCTCAAATGAGACAATCATGGATTCTAGTA
AGGATCTTCATTCATTTTGTGATTAGACACTATAAACACATTTTCCGCATGAGGATAAATGATAT
TGATGATTTTTGCTTGCATGGAAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCC
CTAAAATATAACAAGCATCGATTCTTGTTTTAGTCTCTATTCGTTTCGAGATTTGGAACCAAGAA
CACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTTTCGCAAGAAAAGGTTTCCTTTCC
ACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACATGAATAGTCTTACGAATCC
CCATTTTTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCAGTAGGACAGACGAT
Found at i:992677 original size:476 final size:472
Alignment explanation
Indices: 991920--1009574 Score: 19570
Period size: 476 Copynumber: 37.1 Consensus size: 472
991910 GTCTCCCTTT
* **
991920 TTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
1 TTTTCGAGATTAGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
* * ** * *
991985 TCACAAGAAAAGCTTTTCTTTCCATCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACAAA
66 TCACAAGAAAAGCTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* *
992050 AACTTAAATAGTCATACAAATCCCTATTCATTTCAGGATTACGCACCATAAACATAGTCTTCTCA
131 AACTTAAATAGTCATACAAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTCA
* *
992115 CTAGGATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAA
196 CTAGGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCC--CAACTTTTGCAA
*
992180 AGTCTAAGTTCATGCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTG
259 AGTCTAAGTTCATG-CTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTG
*
992245 ATTAGACACTGTAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGG
323 ATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGG
*
992310 AAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGA
388 AAATTT-CTTTTTGCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGA
992375 TTCTTGTTTTAGTCTCTATTC
452 TTCTTGTTTTAGTCTCTATTC
* * * * * *
992396 TTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTT
1 TTTTCGAGATTAGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
* * * * ** *
992461 TCGCAAGAAAAGGTTTCCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACA
66 TCACAAGAAAAGCTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* * * * **
992526 AACATGAATAGTCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTC
131 AACTTAAATAGTCATACAAATCCCCA-TTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTC
* * * * * ** * * *
992591 AGTAGGACAGACGATATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTCCCCTAATTTTTGCA
195 ACTAGGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTT-TTTCCCC-AACTTTTGCA
* * * * * * * *
992656 AACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTGGTAATGATCTTCATTCATTTTGTG
258 AAGTCTAAGTTCATGCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTG
* ** ** * * * * *
992721 ATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCT-TTTCCGTG
323 ATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTT-TGCTTGCATG
* ** ** * * **
992785 AAAATATT-TTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGACAAGCATC
387 GAAAT-TTCTT-TTTGCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATC
** ***
992849 GATTCTCATAAGAGTCTCCCTATT-
450 GATTCTTGTTTTAGTCT--CTATTC
** *
992873 TTTT-GAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATACTTGACATTGTTGTTTTGGTG
1 TTTTCGAGATTAGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
** *
992937 TCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACA
66 TCACAAGAAAAGCTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* *
993002 AACTTAAATAGTCATACAAATCCCCATTCATTTCACGATTACGCACCATAAACATAGTCTTCTCA
131 AACTTAAATAGTCATACAAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTCA
* *
993067 CTAGGATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAA
196 CTAGGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCC--CAACTTTTGCAA
*
993132 AGTCTAAGTTCATGCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTG
259 AGTCTAAGTTCATG-CTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTG
993197 ATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGG
323 ATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGG
*
993262 AAATTTCCTTTTTCCCCTA-TTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGA
388 AAATTT-CTTTTTGCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGA
993326 TTCTTGTTTTAGTCTCTATTC
452 TTCTTGTTTTAGTCTCTATTC
* * * * * *
993347 TTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTT
1 TTTTCGAGATTAGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
* * * ** *
993412 TCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACA
66 TCACAAGAAAAGCTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* * * * * **
993477 AACATGAATAGCCTTACGAATCCCCATATTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTC
131 AACTTAAATAGTCATACAAATCCCCAT-TCATTTCAGGATTAGGCACCATAAACATAGTCTTCTC
* * * * * * ** * * * *
993542 AGTAGGACAGACGATATTGATGCCTTAATATCACAAGAAAGGCTTTCTTTCCCTTAATTTTTGCA
195 ACTAGGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTT-TTTCCC-CAACTTTTGCA
* * * * * * *
993607 AACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTG
258 AAGTCTAAGTTCATGCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTG
* ** ** * * * * *
993672 ATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCT-TTTCCGTG
323 ATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTT-TGCTTGCATG
* ** ** * * ***
993736 AAAATCTT-TTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGGCAAGCATC
387 GAAAT-TTCTT-TTTGCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATC
** *** ** *
993800 GATTCTCATAAGAGTCTCCCTTT
450 GATTCTTGTTTTAGTCTCTATTC
* **
993823 TTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
1 TTTTCGAGATTAGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
* * ** * *
993888 TCACAAGAAAAGCTTTCCTTTGCACCATTTTTTATATAATCAAAGTTTGTCTCTTAAATAACACA
66 TCACAAGAAAAGCTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* * *
993953 AACTTAAACAGTCATACAAATCCCCATTCATTTCGGGAATAGGCACCATAAACATAGTCTTCTCA
131 AACTTAAATAGTCATACAAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTCA
* *
994018 CTAAGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAA
196 CTAGGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCC--CAACTTTTGCAA
* *
994083 AGTCTAAGTTCATCCCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTTATTTTGTG
259 AGTCTAAGTTCAT-GCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTG
* *
994148 ATTAGACACTATAAACACATTT-TCCGCATTAGGATAAATTATATTGATGATTTTTGCTTGCATT
323 ATTAGACACTATAAACAC-TTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATG
* *
994212 GAAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTAAAATATAACAAGCATCG
387 GAAATTT-CTTTTTGCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCG
*
994277 ATTCTTGTTTTAGTCTCTCTTC
451 ATTCTTGTTTTAGTCTCTATTC
* * * * * * *
994299 GTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTT
1 TTTTCGAGATTAGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
* * ** ** *
994364 TCGCAAGAAAAGGTTTTCTTTCCACTGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACA
66 TCACAAGAAAAGCTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* * * * ** *
994429 AACATGAATAGTCTTACGAATCCCCATTTTTTTTTCAAGATTAGGCACCATAAACATAGTCTTCT
131 AACTTAAATAGTCATACAAATCCCCA--TTCATTTCAGGATTAGGCACCATAAACATAGTCTTCT
* * * * * ** ** * * *
994494 CAGTAGGACAGACGATATTGATGCTTTAATAGCACAAGAAAGGCTTTCTTTCCCCCAATTTTTAC
194 CACTAGGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTT-TTT-CCCCAACTTTTGC
* * * * * * * *
994559 AAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTTATTCATTTTGT
257 AAAGTCTAAGTTCATGCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGT
* ** ** * * * * *
994624 GATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCT-TTTCCGT
322 GATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTT-TGCTTGCAT
* *** ** * ** *** *
994688 GCAAATCTT-TTCTTTGGTTTATTTCCCTTAAAATCAAAATTCATCTATTAAATACGGCAAACAT
386 GGAAAT-TTCTT-TTTGCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCAT
** *** ** *
994752 CGATTCTCATAAGAGTCTCCCTTT
449 CGATTCTTGTTTTAGTCTCTATTC
* **
994776 TTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
1 TTTTCGAGATTAGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
* * ** * *
994841 TCACAAGAAAAGCTTTTCTTTCCATCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACAAA
66 TCACAAGAAAAGCTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* *
994906 AACTTAAATAGTCATACAAATCCCTATTCATTTCAGGATTACGCACCATAAACATAGTCTTCTCA
131 AACTTAAATAGTCATACAAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTCA
* *
994971 CTAGGATACAAGGTATTGAAGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCTGCAACTTTTGTAA
196 CTAGGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCC--CAACTTTTGCAA
*
995036 AGTCTAAGTTCATGCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTG
259 AGTCTAAGTTCATG-CTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTG
995101 ATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGG
323 ATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGG
*
995166 AAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGA
388 AAATTT-CTTTTTGCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGA
995231 TTCTTGTTTTAGTCTCTATTC
452 TTCTTGTTTTAGTCTCTATTC
* * * * * * *
995252 TTTTCGAGATTTGGAACCAAGAACACATTCCATTCATTAGGATACATTACATTGATGCTTTGGTT
1 TTTTCGAGATTAGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
* * ** *
995317 TCGCAAGAAAAGGTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACA
66 TCACAAGAAAAGCTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* * * **
995382 AA-TATCAATAGTCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCT
131 AACT-TAAATAGTCATACAAATCCCCA-TTCATTTCAGGATTAGGCACCATAAACATAGTCTTCT
* * * * * * ** * * *
995446 CAGTGGGACAGACGATATTGATGCTTTAATTTTGCAAGAAAGGCTTTCTTTCCCCCAATTTTTAC
194 CACTAGGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTT-TTT-CCCCAACTTTTGC
* * * * * * * *
995511 AAACTGTTAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGT
257 AAAGTCTAAGTTCATGCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGT
* ** ** * * * *
995576 GATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGA-TTTT-CTTTTCGT
322 GATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGC-TTGCAT
* ** ** * * **
995639 GAAAATCTT-TTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGACAAGCAT
386 GGAAAT-TTCTT-TTTGCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCAT
** *** *
995703 CGATTCTCATAAGAGTCTCCCTGTT-
449 CGATTCTTGTTTTAGTCT--CTATTC
** *
995728 TTTT-GAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATACTTGACATTGTTGTTTTGGTG
1 TTTTCGAGATTAGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
** *
995792 TCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACA
66 TCACAAGAAAAGCTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* *
995857 AACTTAAATAGTCATACAAATCCACATTCATTTCAGGATTACGCACCATAAACATAGTCTTCTCA
131 AACTTAAATAGTCATACAAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTCA
* *
995922 CTAGGATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAA
196 CTAGGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCC--CAACTTTTGCAA
*
995987 AGTCTAAGTTCATGCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTG
259 AGTCTAAGTTCATG-CTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTG
996052 ATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGG
323 ATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGG
*
996117 AAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGA
388 AAATTT-CTTTTTGCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGA
996182 TTCTTGTTTTAGTCTCTATTC
452 TTCTTGTTTTAGTCTCTATTC
* * * * * *
996203 TTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTT
1 TTTTCGAGATTAGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
* * * * ** *
996268 TCGCAAGAAAAGGTTTCCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACA
66 TCACAAGAAAAGCTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* * * * **
996333 AACATGAATAGTCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTC
131 AACTTAAATAGTCATACAAATCCCCA-TTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTC
* * * * * ** * * *
996398 AGTAGGACAGACGATATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTCCCCTAATTTTTGCA
195 ACTAGGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTT-TTTCCCC-AACTTTTGCA
* * * * * * * *
996463 AACTGTATGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTG
258 AAGTCTAAGTTCATGCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTG
* ** ** * * * * *
996528 ATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCT-TTTCCGTG
323 ATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTT-TGCTTGCATG
* ** ** * * **
996592 AAAATATT-TTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGACAAGCATC
387 GAAAT-TTCTT-TTTGCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATC
** ***
996656 GATTCTCATAAGAGTCTCCCTATT-
450 GATTCTTGTTTTAGTCT--CTATTC
** *
996680 TTTT-GAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATACTTGACATTGTTGTTTTGGTG
1 TTTTCGAGATTAGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
** *
996744 TCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACA
66 TCACAAGAAAAGCTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* * *
996809 AACTTAAATAGTCACACAAATCCCCATTCATTTCACGATTACGCACCATAAACATAGTCTTCTCA
131 AACTTAAATAGTCATACAAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTCA
* *
996874 CTAGGATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAA
196 CTAGGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCC--CAACTTTTGCAA
* *
996939 AGTCTAAGTTCAAGCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTG
259 AGTCTAAGTTCATG-CTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTG
997004 ATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGG
323 ATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGG
*
997069 AAATTTCCTTTTTCCCCTATTTTTCTC-AAATCAAAATTCATCCCTTAAATATAACAAGCATCGA
388 AAATTT-CTTTTTGCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGA
997133 TTCTTGTTTTAGTCTCTATTC
452 TTCTTGTTTTAGTCTCTATTC
* * * * * *
997154 TTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTT
1 TTTTCGAGATTAGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
* * * ** *
997219 TCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACA
66 TCACAAGAAAAGCTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* * * * * **
997284 AACATGAATAGCCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTC
131 AACTTAAATAGTCATACAAATCCCCA-TTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTC
* * * * * * ** * * * *
997349 AGTAGGACAGACGATATTGATGCCTTAATATCACAAGAAAGGCTTTCTTTCCCTTAATTTTTGCA
195 ACTAGGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTT-TTTCCC-CAACTTTTGCA
* * * * * * *
997414 AACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTG
258 AAGTCTAAGTTCATGCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTG
* ** ** * * * * *
997479 ATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCT-TTTCCGTG
323 ATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTT-TGCTTGCATG
* ** ** * * ***
997543 AAAATCTT-TTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGGCAAGCATC
387 GAAAT-TTCTT-TTTGCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATC
** *** ** *
997607 GATTCTCATAAGAGTCTCCCTTT
450 GATTCTTGTTTTAGTCTCTATTC
* **
997630 TTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
1 TTTTCGAGATTAGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
* * ** * *
997695 TCACAAGAAAAGCTTTCCTTTGCACCATTTTTTATATAATCAAAGTTTGTCTCTTAAATAACACA
66 TCACAAGAAAAGCTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* * *
997760 AACTTAAACAGTCATACAAATCCCCATTCATTTCGGGAATAGGCACCATAAACATAGTCTTCTCA
131 AACTTAAATAGTCATACAAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTCA
*
997825 CTAAGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGCAA
196 CTAGGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCC--CAACTTTTGCAA
* *
997890 AGTCTAAGTTCATCCCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTTATTTTGTG
259 AGTCTAAGTTCAT-GCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTG
* * *
997955 ATTAGACACTATAAACACATTT-TCTGCATTAGGATAAATTATATTGATGATTTTTGCTTGCATT
323 ATTAGACACTATAAACAC-TTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATG
* *
998019 GAAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTAAAATATAACAAGCATCG
387 GAAATTT-CTTTTTGCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCG
998084 ATTCTTGTTTTAGTCTCTATTC
451 ATTCTTGTTTTAGTCTCTATTC
* * * * * * *
998106 GTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTT
1 TTTTCGAGATTAGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
* * ** ** *
998171 TCGCAAGAAAAGGTTTTCTTTCCACTGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACA
66 TCACAAGAAAAGCTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* * * * ** *
998236 AACATGAATAGTCTTACGAATCCCCATTTTTTTTTCAAGATTAGGCACCATAAACATAGTCTTCT
131 AACTTAAATAGTCATACAAATCCCCA--TTCATTTCAGGATTAGGCACCATAAACATAGTCTTCT
* * * * * ** ** * * *
998301 CAGTAGGACAGACGATATTGATGCTTTAATAGCACAAGAAAGGCTTTCTTTCCCCCAATTTTTAC
194 CACTAGGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTT-TTT-CCCCAACTTTTGC
* * * * * * * *
998366 AAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTTATTCATTTTGT
257 AAAGTCTAAGTTCATGCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGT
* ** ** * * * * *
998431 GATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCT-TTTCCGT
322 GATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTT-TGCTTGCAT
* ** ** * ** *** *
998495 GCAAATCTT-TTCTTTAG-TTTATTTCCCTTAAAATCAAAATTCATCTATTAAATACGGCAAACA
386 GGAAAT-TTCTT-TTT-GCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCA
** *** ** *
998558 TCGATTCTCATAAGAGTCTCCCTTT
448 TCGATTCTTGTTTTAGTCTCTATTC
* **
998583 TTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
1 TTTTCGAGATTAGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
* * ** * *
998648 TCACAAGAAAAGCTTTCCTTTGCACCATTTTTTATATAATCAAAGTTTGTCTCTTAAATAACACA
66 TCACAAGAAAAGCTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* * *
998713 AACTTAAACAGTCATACAAATCCCCATTCATTTCGGGAATAGGCACCATAAACATAGTCTTCTCA
131 AACTTAAATAGTCATACAAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTCA
*
998778 CTAAGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGCAA
196 CTAGGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCC--CAACTTTTGCAA
* *
998843 AGTCTAAGTTCATCCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTG
259 AGTCTAAGTTCAT-GCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTG
998908 ATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGG
323 ATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGG
*
998973 AAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGA
388 AAATTT-CTTTTTGCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGA
999038 TTCTTGTTTTAGTCTCTATTC
452 TTCTTGTTTTAGTCTCTATTC
* * * * * * *
999059 TTTTCGAGATTTGGAACCAAGAACACATTCCATTCATTAGGATACATTACATTGATGCTTTGGTT
1 TTTTCGAGATTAGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
* * ** *
999124 TCGCAAGAAAAGGTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACA
66 TCACAAGAAAAGCTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* * * **
999189 AA-TATCAATAGTCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCT
131 AACT-TAAATAGTCATACAAATCCCCA-TTCATTTCAGGATTAGGCACCATAAACATAGTCTTCT
* * * * * * ** * *
999253 CAGTGGGACAGACGATATTGATGCTTTAATATT-GCAAGAAAGGCTTTCTTTCCCCCAATTTTTA
194 CACTAGGATACAAGGTATTGATGCTTTGGT-TTCGCAAGAAAGGCTTT-TTT-CCCCAACTTTTG
* * * * * * * *
999317 CAAACTGTTAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTG
256 CAAAGTCTAAGTTCATGCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTG
* ** ** * * * * *
999382 TGATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCT-TTTTCG
321 TGATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTT-TGCTTGCA
* ** ** * * **
999446 TGAAAATCTT-TTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGACAAGCA
385 TGGAAAT-TTCTT-TTTGCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCA
** *** *
999510 TCGATTCTCATAAGAGTCTCCCTGTT-
448 TCGATTCTTGTTTTAGTCT--CTATTC
** *
999536 TTTT-GAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATACTTGACATTGTTGTTTTGGTG
1 TTTTCGAGATTAGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
** *
999600 TCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACA
66 TCACAAGAAAAGCTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* *
999665 AACTTAAATAGTCATACAAATCCACATTCATTTCAGGATTACGCACCATAAACATAGTCTTCTCA
131 AACTTAAATAGTCATACAAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTCA
* *
999730 CTAGGATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAA
196 CTAGGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCC--CAACTTTTGCAA
*
999795 AGTCTAAGTTCATGCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTG
259 AGTCTAAGTTCATG-CTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTG
999860 ATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGG
323 ATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGG
999925 AAATTTCTTTTTTGCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGA
388 AAATTTC-TTTTTGCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGA
999990 TTCTTGTTTTAGTCTCTATTC
452 TTCTTGTTTTAGTCTCTATTC
* * * * * * *
1000011 TTTTCGAGATTTGGAACCAAGAACACATTCCATTCATTAGGATACATTACATTGATGCTTTGGTT
1 TTTTCGAGATTAGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
* * ** *
1000076 TCGCAAGAAAAGGTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACA
66 TCACAAGAAAAGCTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* * * ** *
1000141 AA-TATCAATAGTCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACTATAAACATAGTCTTCT
131 AACT-TAAATAGTCATACAAATCCCCA-TTCATTTCAGGATTAGGCACCATAAACATAGTCTTCT
* * * * * * ** * *
1000205 CAGTGGGACAGACGATATTGATGCTTTAATATT-GCAAGAAAGGCTTTCTTTCCCCCAATTTTTA
194 CACTAGGATACAAGGTATTGATGCTTTGGT-TTCGCAAGAAAGGCTTT-TTT-CCCCAACTTTTG
* * * * * * *
1000269 CAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTG
256 CAAAGTCTAAGTTCATGCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTG
* ** ** * * * * *
1000334 TGATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCT-TTTCCG
321 TGATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTT-TGCTTGCA
* ** ** * * * **
1000398 TGAAAATCTT-TTCTTTGGTCTATTTCCCT-TAAATCAAAATTCATGCATTAAATACGACAAGCA
385 TGGAAAT-TTCTT-TTTGCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCA
** *** ** *
1000461 TCGATTCTCATAAGAGTCTCCCTTT
448 TCGATTCTTGTTTTAGTCTCTATTC
* **
1000486 TTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
1 TTTTCGAGATTAGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
* * ** * *
1000551 TCACAAGAAAAGCTTTCCTTTGCACCATTTTTTATATAATCAAAGTTTGTCTCTTAAATAACACA
66 TCACAAGAAAAGCTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* *
1000616 AACTTAAACAGTCATACAAATCCCCATTCATTTCGGGATTAGGCACCATAAACATAGTCTTCTCA
131 AACTTAAATAGTCATACAAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTCA
* *
1000681 CTAAGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAA
196 CTAGGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCC--CAACTTTTGCAA
* *
1000746 AGTCTAAGTTCATCCCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTTATTTTGTG
259 AGTCTAAGTTCAT-GCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTG
* * *
1000811 ATTAGACACTATAAACACATTT-TCCGCATTAGGATAAATTATTTTGATGATTTTTGCTTGCATT
323 ATTAGACACTATAAACAC-TTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATG
* *
1000875 GAAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTAAAATATAACAAGCATCG
387 GAAATTT-CTTTTTGCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCG
1000940 ATTCTTGTTTTAGTCTCTATTC
451 ATTCTTGTTTTAGTCTCTATTC
* * * * * * *
1000962 GTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTT
1 TTTTCGAGATTAGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
* * * * * ** *
1001027 TCGCAATAAAAGGTTTCCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACA
66 TCACAAGAAAAGCTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* * * * **
1001092 AACATGAATAGTCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTC
131 AACTTAAATAGTCATACAAATCCCCA-TTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTC
* * * * * ** * * * *
1001157 AGTAGGACAGACGATATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTCCCTTAATTTTTGCA
195 ACTAGGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTT-TTTCCC-CAACTTTTGCA
* * * * * * *
1001222 AACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTG
258 AAGTCTAAGTTCATGCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTG
* ** ** * * * * *
1001287 ATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCT-TTTCCGTG
323 ATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTT-TGCTTGCATG
* ** ** * * **
1001351 AAAATATT-TTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGACAAGCATC
387 GAAAT-TTCTT-TTTGCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATC
** ***
1001415 GATTCTCATAAGAGTCTCCCTATT-
450 GATTCTTGTTTTAGTCT--CTATTC
** *
1001439 TTTT-GAGATTAGGAATTAAG---A-A--CCCTTCATTAGAATACTTGACATTGTTGTTTTGGTG
1 TTTTCGAGATTAGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
** *
1001497 TCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACA
66 TCACAAGAAAAGCTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* *
1001562 AACTTAAATAGTCATACAAATCCCCATTCATTTCACGATTACGCACCATAAACATAGTCTTCTCA
131 AACTTAAATAGTCATACAAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTCA
* * *
1001627 CTAGGATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTCCCCAGCAACTTTTGTAA
196 CTAGGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCC--CAACTTTTGCAA
*
1001692 AGTCTAAGTTCATGCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTG
259 AGTCTAAGTTCATG-CTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTG
1001757 ATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGG
323 ATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGG
*
1001822 AAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGA
388 AAATTT-CTTTTTGCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGA
1001887 TTCTTGTTTTAGTCTCTATTC
452 TTCTTGTTTTAGTCTCTATTC
* * * * * *
1001908 TTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTT
1 TTTTCGAGATTAGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
* * ** *
1001973 TCGCAAGAAAAGGTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACA
66 TCACAAGAAAAGCTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* * * * * **
1002038 AACATGAATAGCCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTC
131 AACTTAAATAGTCATACAAATCCCCA-TTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTC
* * * * * * ** * * * *
1002103 AGTAGGACAGACGATATTGATGCCTTAATATCACAAGAAAGGCTTTCTTTCCCTTAATTTTTGCA
195 ACTAGGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTT-TTTCCC-CAACTTTTGCA
* * * * * * *
1002168 AACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTG
258 AAGTCTAAGTTCATGCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTG
* ** ** * * * * *
1002233 ATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCT-TTTCCGTG
323 ATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTT-TGCTTGCATG
* ** ** * * ***
1002297 AAAATCTT-TTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGGCAAGCATC
387 GAAAT-TTCTT-TTTGCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATC
** *** ** *
1002361 GATTCTCATAAGAGTCTCCCTTT
450 GATTCTTGTTTTAGTCTCTATTC
* **
1002384 TTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
1 TTTTCGAGATTAGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
* * ** * *
1002449 TCACAAGAAAAGCTTTCCTTTGCACCATTTTTTATATAATCAAAGTTTGTCTCTTAAATAACACA
66 TCACAAGAAAAGCTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* * *
1002514 AACTTAAACAGTCATACAAATCCCCATTCATTTCGGGAATAGGCACCATAAACATAGTCTTCTCA
131 AACTTAAATAGTCATACAAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTCA
* *
1002579 CTAAGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAA
196 CTAGGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCC--CAACTTTTGCAA
* *
1002644 AGTCTAAGTTCATCCCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTTATTTTGTG
259 AGTCTAAGTTCAT-GCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTG
* * *
1002709 ATTAGACACTATAAACACATTT-TCCGCATTAGGATAAATTATATTGATGATTTTTGCCTGCATT
323 ATTAGACACTATAAACAC-TTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATG
* * *
1002773 GAAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTAAAATATAACAAGCATCA
387 GAAATTT-CTTTTTGCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCG
1002838 ATTCTTGTTTTAGTCTCTATTC
451 ATTCTTGTTTTAGTCTCTATTC
* * * * * * *
1002860 GTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTT
1 TTTTCGAGATTAGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
* * ** ** *
1002925 TCGCAAGAAAAGGTTTTCTTTCCACTGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACA
66 TCACAAGAAAAGCTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* * * * ** *
1002990 AACATGAATAGTCTTACGAATCCCCATTTTTTTTTCAAGATTAGGCACCATAAACATAGTCTTCT
131 AACTTAAATAGTCATACAAATCCCCA--TTCATTTCAGGATTAGGCACCATAAACATAGTCTTCT
* * * * * ** ** * * *
1003055 CAGTAGGACAGACGATATTGATGCTTTAATAGCACAAGAAAGGCTTTCTTTCCCCCAATTTTTAC
194 CACTAGGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTT-TTT-CCCCAACTTTTGC
* * * * * * * *
1003120 AAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTTATTCATTTTGT
257 AAAGTCTAAGTTCATGCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGT
* ** ** * * * * *
1003185 GATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCT-TTTCCGT
322 GATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTT-TGCTTGCAT
* *** ** * ** *** *
1003249 GCAAATCTT-TTCTTTGGTTTATTTCCCTTAAAATCAAAATTCATCTATTAAATACGGCAAACAT
386 GGAAAT-TTCTT-TTTGCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCAT
** *** ** *
1003313 CGATTCTCATAAGAGTCTCCCTTT
449 CGATTCTTGTTTTAGTCTCTATTC
* **
1003337 TTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
1 TTTTCGAGATTAGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
* * ** * *
1003402 TCACAAGAAAAGCTTTTCTTTCCATCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACAAA
66 TCACAAGAAAAGCTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* *
1003467 AACTTAAATAGTCATACAAATCCCTATTCATTTCAGGATTACGCACCATAAACATAGTCTTCTCA
131 AACTTAAATAGTCATACAAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTCA
* *
1003532 CTAGGATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAA
196 CTAGGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCC--CAACTTTTGCAA
*
1003597 AGTCTAAGTTCATGCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTG
259 AGTCTAAGTTCATG-CTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTG
1003662 ATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGG
323 ATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGG
*
1003727 AAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGA
388 AAATTT-CTTTTTGCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGA
1003792 TTCTTGTTTTAGTCTCTATTC
452 TTCTTGTTTTAGTCTCTATTC
* * * * * * *
1003813 TTTTCGAGATTTGGAGCCAAGAACACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTT
1 TTTTCGAGATTAGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
* * * * ** *
1003878 TCGCAAGAAAAGGTTTCCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACA
66 TCACAAGAAAAGCTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* * * * **
1003943 AACATGAATAGTCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTC
131 AACTTAAATAGTCATACAAATCCCCA-TTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTC
* * * * * ** * * *
1004008 AGTAGGACAGACGATATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTCCCCTAATTTTTGCA
195 ACTAGGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTT-TTTCCCC-AACTTTTGCA
* * * * * * *
1004073 AACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTG
258 AAGTCTAAGTTCATGCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTG
* ** ** * * * * *
1004138 ATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCT-TTTCCGTG
323 ATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTT-TGCTTGCATG
* ** ** * * **
1004202 AAAATATT-TTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGACAAGCATC
387 GAAAT-TTCTT-TTTGCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATC
** ***
1004266 GATTCTCATAAGAGTCTCCCTATT-
450 GATTCTTGTTTTAGTCT--CTATTC
** *
1004290 TTTT-GAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATACTTGACATTGTTGTTTTGGTG
1 TTTTCGAGATTAGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
* * *
1004354 TCACAAGAAAAGCTTTTCTTTCCACCATTTT--TTA-TATCAAAGTTTGTCTCTTAAATAACACA
66 TCACAAGAAAAGCTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* *
1004416 AACTTAAATAGTCATACAAATCCCCATTCATTTCACGATTACGCACCATAAACATAGTCTTCTCA
131 AACTTAAATAGTCATACAAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTCA
* *
1004481 CTAGGATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAA
196 CTAGGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCC--CAACTTTTGCAA
*
1004546 AGTCTAAGTTCATGCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTG
259 AGTCTAAGTTCATG-CTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTG
1004611 ATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGG
323 ATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGG
*
1004676 AAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGA
388 AAATTT-CTTTTTGCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGA
1004741 TTCTTGTTTTAGTCTCTATTC
452 TTCTTGTTTTAGTCTCTATTC
* * * * * * *
1004762 TTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGGCCTTGATGCTTTGGTT
1 TTTTCGAGATTAGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
* * * ** *
1004827 TCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACA
66 TCACAAGAAAAGCTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* * * * * **
1004892 AACATGAATAGCCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTC
131 AACTTAAATAGTCATACAAATCCCCA-TTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTC
* * * * * * ** * * * *
1004957 AGTAGGACAGACGATATTGATGCCTTAATATCACAAGAAAGGCTTTCTTTCCCTTAATTTTTGCA
195 ACTAGGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTT-TTTCCC-CAACTTTTGCA
* * * * * * *
1005022 AACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTG
258 AAGTCTAAGTTCATGCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTG
* ** ** * * * * *
1005087 ATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCT-TTTCCGTG
323 ATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTT-TGCTTGCATG
* ** ** * * **
1005151 AAAATCTT-TTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGACAAGCATC
387 GAAAT-TTCTT-TTTGCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATC
** *** *
1005215 GATTCTCATAAGAGTCTCCCTGTT-
450 GATTCTTGTTTTAGTCT--CTATTC
** * *
1005239 TTTT-GAGATTAGGAATTAAGAACACATTCCCTTTATTAGAATACTTGACATTGTTGTTTTGGTG
1 TTTTCGAGATTAGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
** *
1005303 TCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACA
66 TCACAAGAAAAGCTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* *
1005368 AACTTAAATAGTCATACAAATCCCCATTCATTTCACGATTACGCACCATAAACATAGTCTTCTCA
131 AACTTAAATAGTCATACAAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTCA
* * *
1005433 CTAGGATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTGTTTTCCCAGCAACTTTTGTAA
196 CTAGGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCC--CAACTTTTGCAA
*
1005498 AGTCTAAGTTCATGCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTG
259 AGTCTAAGTTCATG-CTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTG
1005563 ATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGG
323 ATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGG
*
1005628 AAATTTCTTTTTTGCCCTATTTTTCTCACAATCAAAATTCATCCCTTAAATATAACAAGCATCGA
388 AAATTTC-TTTTTGCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGA
1005693 TTCTTGTTTTAGTCTCTATTC
452 TTCTTGTTTTAGTCTCTATTC
* * * * * * *
1005714 TTTTCGAGATTTGGAACCAAGAACACATTCCATTCATTAGGATACATTACATTGATGCTTTGGTT
1 TTTTCGAGATTAGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
* * ** *
1005779 TCGCAAGAAAAGGTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACA
66 TCACAAGAAAAGCTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* ** * **
1005844 AA-TATCAATAGTGTTACGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCT
131 AACT-TAAATAGTCATACAAATCCCCA-TTCATTTCAGGATTAGGCACCATAAACATAGTCTTCT
* * * * * * ** * *
1005908 CAGTGGGACAGACGATATTGATGCTTTAATATT-GCAAGAAAGGCTTTCTTTCCCCCAATTTTTA
194 CACTAGGATACAAGGTATTGATGCTTTGGT-TTCGCAAGAAAGGCTTT-TTT-CCCCAACTTTTG
* * * * * * *
1005972 CAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTG
256 CAAAGTCTAAGTTCATGCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTG
* ** ** * * * * *
1006037 TGATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCT-TTTCCG
321 TGATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTT-TGCTTGCA
* ** ** * * * ***
1006101 TGAAAATCTT-TTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATGCATTAAATAGGGCAAGCA
385 TGGAAAT-TTCTT-TTTGCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCA
** *** ** *
1006165 TCGATTCTCATAAGAGTCTCCCTTT
448 TCGATTCTTGTTTTAGTCTCTATTC
* **
1006190 TTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
1 TTTTCGAGATTAGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
* * ** *
1006255 TCACAAGAAAAGCTTTCCTTTGCACCATTTTTTATATAATCAAAGTTTGTCTCTTAAATAACG-C
66 TCACAAGAAAAGCTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTTGTCTCTTAAATAA-GAC
* *
1006319 AAACTTAAACAGTCATACAAATCCCCATTCATTTCGGGATTAGGCACCATAAACATAGTCTTCTC
130 AAACTTAAATAGTCATACAAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTC
* *
1006384 ACTAAGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTA
195 ACTAGGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCC--CAACTTTTGCA
*
1006449 AAGTCTAAGTTCATTCCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGT
258 AAGTCTAAGTTCA-TGCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGT
*
1006514 GATTAGACACTATAAACACATTT-TCCGCATTAGGATAAATTATATTGATGATTTTTGCTTGCAT
322 GATTAGACACTATAAACAC-TTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCAT
* * *
1006578 TGAAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTAAAATATAACAAGCATC
386 GGAAATTT-CTTTTTGCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATC
1006643 GATTCTTGTTTTAGTCTCTATTC
450 GATTCTTGTTTTAGTCTCTATTC
* * * * * * *
1006666 GTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTT
1 TTTTCGAGATTAGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
* * ** ** *
1006731 TCGCAAGAAAAGGTTTTCTTTCCACTGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACA
66 TCACAAGAAAAGCTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* * * * **
1006796 AACATGAATAGTCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTC
131 AACTTAAATAGTCATACAAATCCCCA-TTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTC
* * * * * **** * * *
1006861 AGTAGGACAGACGATATTGATGCTTTAAAATCACAAGAAAGGCTTTCTTTCCCTTAATTTTTGCA
195 ACTAGGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTT-TTTCCC-CAACTTTTGCA
* * * * * * *
1006926 AACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTG
258 AAGTCTAAGTTCATGCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTG
* ** ** * * * * *
1006991 ATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCT-TTTCCGTG
323 ATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTT-TGCTTGCATG
* ** ** * * **
1007055 CAAATCTT-TTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGACAAGCATC
387 GAAAT-TTCTT-TTTGCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATC
** *** *
1007119 GATTCTCATAAGAGTCTCCCTGTT-
450 GATTCTTGTTTTAGTCT--CTATTC
** *
1007143 TTTT-GAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATACTTGACATTGTTGTTTTGGTG
1 TTTTCGAGATTAGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
** *
1007207 TCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACA
66 TCACAAGAAAAGCTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* * *
1007272 AACTTAAATAGTCATACAAATCCCCATTCATTTCATGATTACGCACCATAGACATAGTCTTCTCA
131 AACTTAAATAGTCATACAAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTCA
* *
1007337 CTAGGATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAA
196 CTAGGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCC--CAACTTTTGCAA
*
1007402 AGTCTAAGTTCATGCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTG
259 AGTCTAAGTTCATG-CTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTG
1007467 ATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGG
323 ATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGG
*
1007532 AAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGA
388 AAATTT-CTTTTTGCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGA
1007597 TTCTTGTTTTAGTCTCTATTC
452 TTCTTGTTTTAGTCTCTATTC
* * * * * *
1007618 TTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTT
1 TTTTCGAGATTAGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
* * * ** * *
1007683 TCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTTTTAATTAAGACA
66 TCACAAGAAAAGCTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* * * * ** *
1007748 AACATGAATAGTCTTACGAATCCCCATTTTTTTTTTAGGATTAGGCACCATAAACATAGTCTTCT
131 AACTTAAATAGTCATACAAATCCCCA--TTCATTTCAGGATTAGGCACCATAAACATAGTCTTCT
* ** * * *
1007813 CAGTAGG--ACAGAGGATATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTCCCCCAATTTTT
194 CACTAGGATACA-AGG-TATTGATGCTTTGGTTTCGCAAGAAAGGCTTT-TTT-CCCCAACTTTT
* * * * * * * *
1007876 ACAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTT
255 GCAAAGTCTAAGTTCATGCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTT
* ** ** * * * *
1007941 GTGATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCT-TTTCC
320 GTGATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTT-TGCTTGC
* * ** ** * * * ***
1008005 GTGAAAATCTT-TTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATGAAATACGGCAAGC
384 ATGGAAAT-TTCTT-TTTGCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGC
** *** *
1008069 ATCGATTCTCATAAGAGTCTCCCTGTT-
447 ATCGATTCTTGTTTTAGTCT--CTATTC
** *
1008096 TTTT-GAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATACTTGACATTGTTGTTTTGGTG
1 TTTTCGAGATTAGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
** * *
1008160 TCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAATGTTTGTCTCTTAAATAACACA
66 TCACAAGAAAAGCTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* *
1008225 AACTTAAATAGTCATACAAATCCCCATTCATTTCATGATTACGCACCATAAACATAGTCTTCTCA
131 AACTTAAATAGTCATACAAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTCA
* *
1008290 CTAGGATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAA
196 CTAGGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCC--CAACTTTTGCAA
*
1008355 AGTCTAAGTTCATGCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTGTG
259 AGTCTAAGTTCATG-CTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTG
1008420 ATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGG
323 ATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGG
1008485 AAATTTCTTTTTTGCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGA
388 AAATTTC-TTTTTGCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGA
1008550 TTCTTGTTTTAGTCTCTATTC
452 TTCTTGTTTTAGTCTCTATTC
* * * * * * *
1008571 TTTTCGAGATTTGGAACCAAGAACACATTCCATTCATTAGGATACATTACATTGATGCTTTGGTT
1 TTTTCGAGATTAGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
* * ** *
1008636 TCGCAAGAAAAGGTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACA
66 TCACAAGAAAAGCTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* ** * **
1008701 AA-TATCAATAGTGTTACGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCT
131 AACT-TAAATAGTCATACAAATCCCCA-TTCATTTCAGGATTAGGCACCATAAACATAGTCTTCT
* * * * * * * ** * *
1008765 TAGTGGGACAGACGATATTGATGCTTTAATATTTTGCAAGAAAGGCTTTCTTTCCCCTAATTTTT
194 CACTAGGATACAAGGTATTGATGCTTT--GGTTTCGCAAGAAAGGCTTT-TTTCCCC-AACTTTT
* * * * * * * *
1008830 ACAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTT
255 GCAAAGTCTAAGTTCATGCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTT
* * ** ** * * * *
1008895 GTGATTAGGCACTATAAAGACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCT-TTTCC
320 GTGATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTT-TGCTTGC
* * ** ** * * * ***
1008959 GTGAAAATCTT-TTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATGCATTAAATACGGCAAGC
384 ATGGAAAT-TTCTT-TTTGCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGC
** *** ** *
1009023 ATCGATTCTCATAAGAGTCTCCCTTT
447 ATCGATTCTTGTTTTAGTCTCTATTC
** **
1009049 TTTTTTAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
1 TTTTCGAGATTAGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
* * * * *
1009114 TCACAAGAAAAGCTTTCCTTTGCACCA-TTTCTTATATAATCAAAGTTTGTCTCTTAAATAACAC
66 TCACAAGAAAAGCTTTTCTTTCCACCATTTTC-GATAGAATCAAAGTTTGTCTCTTAAATAAGAC
* *
1009178 AAACTTAAACAGTCATACAAATCCCCATTCATTTCGGGATTAGGCACCATAAACATAGTCTTCTC
130 AAACTTAAATAGTCATACAAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTC
* *
1009243 ACTAAGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTA
195 ACTAGGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCC--CAACTTTTGCA
1009308 AAGTCTAAGTTCATGCCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGT
258 AAGTCTAAGTTCATG-CTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGT
*
1009373 GATTAGACACTATAAACACATTT-TCCGCATTAGGATAAATTATATTGATGATTTTTGCTTGCAT
322 GATTAGACACTATAAACAC-TTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCAT
* * *
1009437 TGAAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTAAAATATAACAAGCATC
386 GGAAATTT-CTTTTTGCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATC
1009502 GATTCTTGTTTTAGTCTCTATTC
450 GATTCTTGTTTTAGTCTCTATTC
* *
1009525 TTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGAC
1 TTTTCGAGATTAGGAACCAAGAACACATTCCCTTCATTAGAATACATGAC
1009575 CTCAATACAA
Statistics
Matches: 14007, Mismatches: 2877, Indels: 590
0.80 0.16 0.03
Matches are distributed among these distances:
468 10 0.00
469 98 0.01
470 275 0.02
471 13 0.00
472 105 0.01
473 318 0.02
474 292 0.02
475 2418 0.17
476 7320 0.52
477 2333 0.17
478 738 0.05
479 69 0.00
480 18 0.00
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.36
Consensus pattern (472 bp):
TTTTCGAGATTAGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTG
TCACAAGAAAAGCTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
AACTTAAATAGTCATACAAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTCA
CTAGGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCCAACTTTTGCAAAG
TCTAAGTTCATGCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATT
AGACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAA
TTTCTTTTTGCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCT
TGTTTTAGTCTCTATTC
Found at i:997317 original size:952 final size:952
Alignment explanation
Indices: 991769--1009576 Score: 32540
Period size: 952 Copynumber: 18.7 Consensus size: 952
991759 GACAGACGAT
* *
991769 ATTAGGCACTATAAACACAATCCCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGC
1 ATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGA
* * *
991834 AAATCTTTTCTTTGGTTTATTTCCCTTAAAATCAAAATTCATCTATTAAATACGGCAAACATCGA
66 AAATCTTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGGCAAGCATCGA
991899 TTCTCATAAGAGTCTCCCTTTTTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATA
131 TTCTCATAAGAGTCTCCCTTTTTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATA
* *
991964 CATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCATCGTTTTTTATAGAATCAAA
196 CATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAA
* *
992029 GTTTGTCTCTTAAATAACAAAAACTTAAATAGTCATACAAATCCCTATTCATTTCAGGATTACGC
261 GTTTGTCTCTTAAATAACACAAACTTAAATAGTCATACAAATCCCCATTCATTTCAGGATTACGC
992094 ACCATAAACATAGTCTTCTCACTAGGATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTT
326 ACCATAAACATAGTCTTCTCACTAGGATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTT
992159 TTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAATTATGGATTCTAGTA
391 TTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAATTATGGATTCTAGTA
*
992224 AGGATCTTCATTCATTTTGTGATTAGACACTGTAAACACTTTCTCCGCATTAGGATAAATGATAT
456 AGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATAT
992289 TGATGATTTTTGCTTGCATGGAAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCC
521 TGATGATTTTTGCTTGCATGGAAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCC
992354 CTTAAATATAACAAGCATCGATTCTTGTTTTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAA
586 CTTAAATATAACAAGCATCGATTCTTGTTTTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAA
*
992419 CACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTTTCGCAAGAAAAGGTTTCCTTTCC
651 CACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCC
992484 ACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACATGAATAGTCTTACGAATCC
716 ACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACATGAATAGTCTTACGAATCC
992549 CCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGTAGGACAGACGATATTGATGC
781 CCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGTAGGACAGACGATATTGATGC
*
992614 TTTAATATCACAAGAAAGGCTTTCTTTCCCCTAATTTTTGCAAACTGTAAGTTCATGCTCAAATA
846 TTTAATATCACAAGAAAGGCTTTCTTTCCCCTAATTTTTACAAACTGTAAGTTCATGCTCAAATA
*
992679 AGACAAACCTAGATTCTGGTAATGATCTTCATTCATTTTGTG
911 AGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTG
992721 ATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGA
1 ATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGA
* *
992786 AAATATTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGACAAGCATCGA
66 AAATCTTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGGCAAGCATCGA
*
992851 TTCTCATAAGAGTCTCCCTATTTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATA
131 TTCTCATAAGAGTCTCCCTTTTTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATA
*
992916 CTTGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAA
196 CATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAA
*
992981 GTTTGTCTCTTAAATAACACAAACTTAAATAGTCATACAAATCCCCATTCATTTCACGATTACGC
261 GTTTGTCTCTTAAATAACACAAACTTAAATAGTCATACAAATCCCCATTCATTTCAGGATTACGC
993046 ACCATAAACATAGTCTTCTCACTAGGATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTT
326 ACCATAAACATAGTCTTCTCACTAGGATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTT
993111 TTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAATTATGGATTCTAGTA
391 TTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAATTATGGATTCTAGTA
993176 AGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATAT
456 AGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATAT
993241 TGATGATTTTTGCTTGCATGGAAATTTCCTTTTTCCCCTA-TTTTCTCAAAATCAAAATTCATCC
521 TGATGATTTTTGCTTGCATGGAAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCC
993305 CTTAAATATAACAAGCATCGATTCTTGTTTTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAA
586 CTTAAATATAACAAGCATCGATTCTTGTTTTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAA
993370 CACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCC
651 CACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCC
*
993435 ACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACATGAATAGCCTTACGAATCC
716 ACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACATGAATAGTCTTACGAATCC
*
993500 CCATATTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGTAGGACAGACGATATTGATGC
781 CCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGTAGGACAGACGATATTGATGC
* * *
993565 CTTAATATCACAAGAAAGGCTTTCTTTCCCTTAATTTTTGCAAACTGTAAGTTCATGCTCAAATA
846 TTTAATATCACAAGAAAGGCTTTCTTTCCCCTAATTTTTACAAACTGTAAGTTCATGCTCAAATA
993630 AGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTG
911 AGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTG
993672 ATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGA
1 ATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGA
993737 AAATCTTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGGCAAGCATCGA
66 AAATCTTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGGCAAGCATCGA
993802 TTCTCATAAGAGTCTCCCTTTTTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATA
131 TTCTCATAAGAGTCTCCCTTTTTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATA
* * *
993867 CATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTCCTTTGCACCATTTTTTATATAATCAAA
196 CATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAA
* * * *
993932 GTTTGTCTCTTAAATAACACAAACTTAAACAGTCATACAAATCCCCATTCATTTCGGGAATAGGC
261 GTTTGTCTCTTAAATAACACAAACTTAAATAGTCATACAAATCCCCATTCATTTCAGGATTACGC
* *
993997 ACCATAAACATAGTCTTCTCACTAAGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTT
326 ACCATAAACATAGTCTTCTCACTAGGATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTT
* *
994062 TTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATCCCTCAAATGAGACAATCATGGATTCTAGTA
391 TTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAATTATGGATTCTAGTA
* *
994127 AGGATCTTCATTTATTTTGTGATTAGACACTATAAACACATTT-TCCGCATTAGGATAAATTATA
456 AGGATCTTCATTCATTTTGTGATTAGACACTATAAACAC-TTTCTCCGCATTAGGATAAATGATA
*
994191 TTGATGATTTTTGCTTGCATTGAAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATC
520 TTGATGATTTTTGCTTGCATGGAAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATC
* * *
994256 CCTAAAATATAACAAGCATCGATTCTTGTTTTAGTCTCTCTTCGTTTCGAGATTTGGAACCAAGA
585 CCTTAAATATAACAAGCATCGATTCTTGTTTTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGA
994321 ACACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTC
650 ACACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTC
*
994386 CACTGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACATGAATAGTCTTACGAATC
715 CACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACATGAATAGTCTTACGAATC
*
994451 CCCATTTTTTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCAGTAGGACAGACGATATTGAT
780 CCCA-TTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGTAGGACAGACGATATTGAT
* *
994516 GCTTTAATAGCACAAGAAAGGCTTTCTTTCCCCCAATTTTTACAAACTGTAAGTTCATGCTCAAA
844 GCTTTAATATCACAAGAAAGGCTTTCTTTCCCCTAATTTTTACAAACTGTAAGTTCATGCTCAAA
*
994581 TAAGACAAACCTAGATTCTAGTAATGATCTTTATTCATTTTGTG
909 TAAGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTG
*
994625 ATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGC
1 ATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGA
* * *
994690 AAATCTTTTCTTTGGTTTATTTCCCTTAAAATCAAAATTCATCTATTAAATACGGCAAACATCGA
66 AAATCTTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGGCAAGCATCGA
994755 TTCTCATAAGAGTCTCCCTTTTTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATA
131 TTCTCATAAGAGTCTCCCTTTTTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATA
* *
994820 CATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCATCGTTTTTTATAGAATCAAA
196 CATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAA
* *
994885 GTTTGTCTCTTAAATAACAAAAACTTAAATAGTCATACAAATCCCTATTCATTTCAGGATTACGC
261 GTTTGTCTCTTAAATAACACAAACTTAAATAGTCATACAAATCCCCATTCATTTCAGGATTACGC
*
994950 ACCATAAACATAGTCTTCTCACTAGGATACAAGGTATTGAAGCTTTGGTTTCGCAAGAAAGGCTT
326 ACCATAAACATAGTCTTCTCACTAGGATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTT
*
995015 TTTTCCCTGCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAATTATGGATTCTAGTA
391 TTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAATTATGGATTCTAGTA
995080 AGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATAT
456 AGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATAT
995145 TGATGATTTTTGCTTGCATGGAAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCC
521 TGATGATTTTTGCTTGCATGGAAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCC
995210 CTTAAATATAACAAGCATCGATTCTTGTTTTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAA
586 CTTAAATATAACAAGCATCGATTCTTGTTTTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAA
* * *
995275 CACATTCCATTCATTAGGATACATTACATTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCC
651 CACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCC
* * *
995340 ACCATTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAATATCAATAGTCTTACGAATCC
716 ACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACATGAATAGTCTTACGAATCC
*
995405 CCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGTGGGACAGACGATATTGATGC
781 CCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGTAGGACAGACGATATTGATGC
* ** * *
995470 TTTAATTTTGCAAGAAAGGCTTTCTTTCCCCCAATTTTTACAAACTGTTAGTTCATGCTCAAATA
846 TTTAATATCACAAGAAAGGCTTTCTTTCCCCTAATTTTTACAAACTGTAAGTTCATGCTCAAATA
995535 AGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTG
911 AGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTG
995577 ATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTT-CGTGA
1 ATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGA
*
995641 AAATCTTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGACAAGCATCGA
66 AAATCTTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGGCAAGCATCGA
*
995706 TTCTCATAAGAGTCTCCCTGTTTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATA
131 TTCTCATAAGAGTCTCCCTTTTTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATA
*
995771 CTTGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAA
196 CATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAA
*
995836 GTTTGTCTCTTAAATAACACAAACTTAAATAGTCATACAAATCCACATTCATTTCAGGATTACGC
261 GTTTGTCTCTTAAATAACACAAACTTAAATAGTCATACAAATCCCCATTCATTTCAGGATTACGC
995901 ACCATAAACATAGTCTTCTCACTAGGATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTT
326 ACCATAAACATAGTCTTCTCACTAGGATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTT
995966 TTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAATTATGGATTCTAGTA
391 TTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAATTATGGATTCTAGTA
996031 AGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATAT
456 AGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATAT
996096 TGATGATTTTTGCTTGCATGGAAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCC
521 TGATGATTTTTGCTTGCATGGAAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCC
996161 CTTAAATATAACAAGCATCGATTCTTGTTTTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAA
586 CTTAAATATAACAAGCATCGATTCTTGTTTTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAA
*
996226 CACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTTTCGCAAGAAAAGGTTTCCTTTCC
651 CACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCC
996291 ACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACATGAATAGTCTTACGAATCC
716 ACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACATGAATAGTCTTACGAATCC
996356 CCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGTAGGACAGACGATATTGATGC
781 CCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGTAGGACAGACGATATTGATGC
* *
996421 TTTAATATCACAAGAAAGGCTTTCTTTCCCCTAATTTTTGCAAACTGTATGTTCATGCTCAAATA
846 TTTAATATCACAAGAAAGGCTTTCTTTCCCCTAATTTTTACAAACTGTAAGTTCATGCTCAAATA
996486 AGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTG
911 AGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTG
996528 ATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGA
1 ATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGA
* *
996593 AAATATTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGACAAGCATCGA
66 AAATCTTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGGCAAGCATCGA
*
996658 TTCTCATAAGAGTCTCCCTATTTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATA
131 TTCTCATAAGAGTCTCCCTTTTTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATA
*
996723 CTTGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAA
196 CATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAA
* *
996788 GTTTGTCTCTTAAATAACACAAACTTAAATAGTCACACAAATCCCCATTCATTTCACGATTACGC
261 GTTTGTCTCTTAAATAACACAAACTTAAATAGTCATACAAATCCCCATTCATTTCAGGATTACGC
996853 ACCATAAACATAGTCTTCTCACTAGGATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTT
326 ACCATAAACATAGTCTTCTCACTAGGATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTT
*
996918 TTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCAAGCCTCAAATGAGACAATTATGGATTCTAGTA
391 TTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAATTATGGATTCTAGTA
996983 AGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATAT
456 AGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATAT
997048 TGATGATTTTTGCTTGCATGGAAATTTCCTTTTTCCCCTATTTTTCTC-AAATCAAAATTCATCC
521 TGATGATTTTTGCTTGCATGGAAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCC
997112 CTTAAATATAACAAGCATCGATTCTTGTTTTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAA
586 CTTAAATATAACAAGCATCGATTCTTGTTTTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAA
997177 CACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCC
651 CACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCC
*
997242 ACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACATGAATAGCCTTACGAATCC
716 ACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACATGAATAGTCTTACGAATCC
997307 CCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGTAGGACAGACGATATTGATGC
781 CCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGTAGGACAGACGATATTGATGC
* * *
997372 CTTAATATCACAAGAAAGGCTTTCTTTCCCTTAATTTTTGCAAACTGTAAGTTCATGCTCAAATA
846 TTTAATATCACAAGAAAGGCTTTCTTTCCCCTAATTTTTACAAACTGTAAGTTCATGCTCAAATA
997437 AGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTG
911 AGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTG
997479 ATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGA
1 ATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGA
997544 AAATCTTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGGCAAGCATCGA
66 AAATCTTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGGCAAGCATCGA
997609 TTCTCATAAGAGTCTCCCTTTTTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATA
131 TTCTCATAAGAGTCTCCCTTTTTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATA
* * *
997674 CATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTCCTTTGCACCATTTTTTATATAATCAAA
196 CATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAA
* * * *
997739 GTTTGTCTCTTAAATAACACAAACTTAAACAGTCATACAAATCCCCATTCATTTCGGGAATAGGC
261 GTTTGTCTCTTAAATAACACAAACTTAAATAGTCATACAAATCCCCATTCATTTCAGGATTACGC
* *
997804 ACCATAAACATAGTCTTCTCACTAAGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTT
326 ACCATAAACATAGTCTTCTCACTAGGATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTT
* * *
997869 TTTTCCCAGCAACTTTTGCAAAGTCTAAGTTCATCCCTCAAATGAGACAATCATGGATTCTAGTA
391 TTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAATTATGGATTCTAGTA
* * *
997934 AGGATCTTCATTTATTTTGTGATTAGACACTATAAACACATTT-TCTGCATTAGGATAAATTATA
456 AGGATCTTCATTCATTTTGTGATTAGACACTATAAACAC-TTTCTCCGCATTAGGATAAATGATA
*
997998 TTGATGATTTTTGCTTGCATTGAAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATC
520 TTGATGATTTTTGCTTGCATGGAAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATC
* *
998063 CCTAAAATATAACAAGCATCGATTCTTGTTTTAGTCTCTATTCGTTTCGAGATTTGGAACCAAGA
585 CCTTAAATATAACAAGCATCGATTCTTGTTTTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGA
998128 ACACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTC
650 ACACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTC
*
998193 CACTGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACATGAATAGTCTTACGAATC
715 CACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACATGAATAGTCTTACGAATC
*
998258 CCCATTTTTTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCAGTAGGACAGACGATATTGAT
780 CCCA-TTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGTAGGACAGACGATATTGAT
* *
998323 GCTTTAATAGCACAAGAAAGGCTTTCTTTCCCCCAATTTTTACAAACTGTAAGTTCATGCTCAAA
844 GCTTTAATATCACAAGAAAGGCTTTCTTTCCCCTAATTTTTACAAACTGTAAGTTCATGCTCAAA
*
998388 TAAGACAAACCTAGATTCTAGTAATGATCTTTATTCATTTTGTG
909 TAAGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTG
*
998432 ATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGC
1 ATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGA
* * * *
998497 AAATCTTTTCTTTAGTTTATTTCCCTTAAAATCAAAATTCATCTATTAAATACGGCAAACATCGA
66 AAATCTTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGGCAAGCATCGA
998562 TTCTCATAAGAGTCTCCCTTTTTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATA
131 TTCTCATAAGAGTCTCCCTTTTTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATA
* * *
998627 CATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTCCTTTGCACCATTTTTTATATAATCAAA
196 CATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAA
* * * *
998692 GTTTGTCTCTTAAATAACACAAACTTAAACAGTCATACAAATCCCCATTCATTTCGGGAATAGGC
261 GTTTGTCTCTTAAATAACACAAACTTAAATAGTCATACAAATCCCCATTCATTTCAGGATTACGC
* *
998757 ACCATAAACATAGTCTTCTCACTAAGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTT
326 ACCATAAACATAGTCTTCTCACTAGGATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTT
* *
998822 TTTTCCCAGCAACTTTTGCAAAGTCTAAGTTCATCCCTCAAATGAGACAATTATGGATTCTAGTA
391 TTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAATTATGGATTCTAGTA
998887 AGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATAT
456 AGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATAT
998952 TGATGATTTTTGCTTGCATGGAAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCC
521 TGATGATTTTTGCTTGCATGGAAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCC
999017 CTTAAATATAACAAGCATCGATTCTTGTTTTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAA
586 CTTAAATATAACAAGCATCGATTCTTGTTTTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAA
* * *
999082 CACATTCCATTCATTAGGATACATTACATTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCC
651 CACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCC
* * *
999147 ACCATTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAATATCAATAGTCTTACGAATCC
716 ACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACATGAATAGTCTTACGAATCC
*
999212 CCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGTGGGACAGACGATATTGATGC
781 CCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGTAGGACAGACGATATTGATGC
** * *
999277 TTTAATATTGCAAGAAAGGCTTTCTTTCCCCCAATTTTTACAAACTGTTAGTTCATGCTCAAATA
846 TTTAATATCACAAGAAAGGCTTTCTTTCCCCTAATTTTTACAAACTGTAAGTTCATGCTCAAATA
999342 AGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTG
911 AGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTG
*
999384 ATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTTCGTGA
1 ATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGA
*
999449 AAATCTTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGACAAGCATCGA
66 AAATCTTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGGCAAGCATCGA
*
999514 TTCTCATAAGAGTCTCCCTGTTTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATA
131 TTCTCATAAGAGTCTCCCTTTTTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATA
*
999579 CTTGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAA
196 CATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAA
*
999644 GTTTGTCTCTTAAATAACACAAACTTAAATAGTCATACAAATCCACATTCATTTCAGGATTACGC
261 GTTTGTCTCTTAAATAACACAAACTTAAATAGTCATACAAATCCCCATTCATTTCAGGATTACGC
999709 ACCATAAACATAGTCTTCTCACTAGGATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTT
326 ACCATAAACATAGTCTTCTCACTAGGATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTT
999774 TTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAATTATGGATTCTAGTA
391 TTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAATTATGGATTCTAGTA
999839 AGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATAT
456 AGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATAT
* *
999904 TGATGATTTTTGCTTGCATGGAAATTTCTTTTTTGCCCTATTTTTCTCAAAATCAAAATTCATCC
521 TGATGATTTTTGCTTGCATGGAAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCC
999969 CTTAAATATAACAAGCATCGATTCTTGTTTTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAA
586 CTTAAATATAACAAGCATCGATTCTTGTTTTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAA
* * *
1000034 CACATTCCATTCATTAGGATACATTACATTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCC
651 CACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCC
* * *
1000099 ACCATTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAATATCAATAGTCTTACGAATCC
716 ACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACATGAATAGTCTTACGAATCC
* *
1000164 CCATTTTTTTTCAGGATTAGGCACTATAAACATAGTCTTCTCAGTGGGACAGACGATATTGATGC
781 CCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGTAGGACAGACGATATTGATGC
** *
1000229 TTTAATATTGCAAGAAAGGCTTTCTTTCCCCCAATTTTTACAAACTGTAAGTTCATGCTCAAATA
846 TTTAATATCACAAGAAAGGCTTTCTTTCCCCTAATTTTTACAAACTGTAAGTTCATGCTCAAATA
1000294 AGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTG
911 AGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTG
1000336 ATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGA
1 ATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGA
* *
1000401 AAATCTTTTCTTTGGTCTATTTCCCTT-AAATCAAAATTCATGCATTAAATACGACAAGCATCGA
66 AAATCTTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGGCAAGCATCGA
1000465 TTCTCATAAGAGTCTCCCTTTTTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATA
131 TTCTCATAAGAGTCTCCCTTTTTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATA
* * *
1000530 CATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTCCTTTGCACCATTTTTTATATAATCAAA
196 CATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAA
* * *
1000595 GTTTGTCTCTTAAATAACACAAACTTAAACAGTCATACAAATCCCCATTCATTTCGGGATTAGGC
261 GTTTGTCTCTTAAATAACACAAACTTAAATAGTCATACAAATCCCCATTCATTTCAGGATTACGC
* *
1000660 ACCATAAACATAGTCTTCTCACTAAGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTT
326 ACCATAAACATAGTCTTCTCACTAGGATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTT
* *
1000725 TTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATCCCTCAAATGAGACAATCATGGATTCTAGTA
391 TTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAATTATGGATTCTAGTA
* * *
1000790 AGGATCTTCATTTATTTTGTGATTAGACACTATAAACACATTT-TCCGCATTAGGATAAATTATT
456 AGGATCTTCATTCATTTTGTGATTAGACACTATAAACAC-TTTCTCCGCATTAGGATAAATGATA
*
1000854 TTGATGATTTTTGCTTGCATTGAAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATC
520 TTGATGATTTTTGCTTGCATGGAAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATC
* *
1000919 CCTAAAATATAACAAGCATCGATTCTTGTTTTAGTCTCTATTCGTTTCGAGATTTGGAACCAAGA
585 CCTTAAATATAACAAGCATCGATTCTTGTTTTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGA
* *
1000984 ACACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTTTCGCAATAAAAGGTTTCCTTTC
650 ACACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTC
1001049 CACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACATGAATAGTCTTACGAATC
715 CACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACATGAATAGTCTTACGAATC
1001114 CCCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGTAGGACAGACGATATTGATG
780 CCCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGTAGGACAGACGATATTGATG
* *
1001179 CTTTAATATCACAAGAAAGGCTTTCTTTCCCTTAATTTTTGCAAACTGTAAGTTCATGCTCAAAT
845 CTTTAATATCACAAGAAAGGCTTTCTTTCCCCTAATTTTTACAAACTGTAAGTTCATGCTCAAAT
1001244 AAGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTG
910 AAGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTG
1001287 ATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGA
1 ATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGA
* *
1001352 AAATATTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGACAAGCATCGA
66 AAATCTTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGGCAAGCATCGA
*
1001417 TTCTCATAAGAGTCTCCCTATTTTTTGAGATTAGGAATTAAG---A-A--CCCTTCATTAGAATA
131 TTCTCATAAGAGTCTCCCTTTTTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATA
*
1001476 CTTGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAA
196 CATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAA
*
1001541 GTTTGTCTCTTAAATAACACAAACTTAAATAGTCATACAAATCCCCATTCATTTCACGATTACGC
261 GTTTGTCTCTTAAATAACACAAACTTAAATAGTCATACAAATCCCCATTCATTTCAGGATTACGC
1001606 ACCATAAACATAGTCTTCTCACTAGGATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTT
326 ACCATAAACATAGTCTTCTCACTAGGATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTT
*
1001671 TTTCCCCAGCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAATTATGGATTCTAGTA
391 TTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAATTATGGATTCTAGTA
1001736 AGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATAT
456 AGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATAT
1001801 TGATGATTTTTGCTTGCATGGAAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCC
521 TGATGATTTTTGCTTGCATGGAAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCC
1001866 CTTAAATATAACAAGCATCGATTCTTGTTTTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAA
586 CTTAAATATAACAAGCATCGATTCTTGTTTTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAA
1001931 CACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCC
651 CACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCC
* *
1001996 ACCATTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACATGAATAGCCTTACGAATCC
716 ACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACATGAATAGTCTTACGAATCC
1002061 CCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGTAGGACAGACGATATTGATGC
781 CCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGTAGGACAGACGATATTGATGC
* * *
1002126 CTTAATATCACAAGAAAGGCTTTCTTTCCCTTAATTTTTGCAAACTGTAAGTTCATGCTCAAATA
846 TTTAATATCACAAGAAAGGCTTTCTTTCCCCTAATTTTTACAAACTGTAAGTTCATGCTCAAATA
1002191 AGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTG
911 AGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTG
1002233 ATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGA
1 ATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGA
1002298 AAATCTTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGGCAAGCATCGA
66 AAATCTTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGGCAAGCATCGA
1002363 TTCTCATAAGAGTCTCCCTTTTTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATA
131 TTCTCATAAGAGTCTCCCTTTTTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATA
* * *
1002428 CATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTCCTTTGCACCATTTTTTATATAATCAAA
196 CATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAA
* * * *
1002493 GTTTGTCTCTTAAATAACACAAACTTAAACAGTCATACAAATCCCCATTCATTTCGGGAATAGGC
261 GTTTGTCTCTTAAATAACACAAACTTAAATAGTCATACAAATCCCCATTCATTTCAGGATTACGC
* *
1002558 ACCATAAACATAGTCTTCTCACTAAGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTT
326 ACCATAAACATAGTCTTCTCACTAGGATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTT
* *
1002623 TTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATCCCTCAAATGAGACAATCATGGATTCTAGTA
391 TTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAATTATGGATTCTAGTA
* *
1002688 AGGATCTTCATTTATTTTGTGATTAGACACTATAAACACATTT-TCCGCATTAGGATAAATTATA
456 AGGATCTTCATTCATTTTGTGATTAGACACTATAAACAC-TTTCTCCGCATTAGGATAAATGATA
* *
1002752 TTGATGATTTTTGCCTGCATTGAAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATC
520 TTGATGATTTTTGCTTGCATGGAAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATC
* * *
1002817 CCTAAAATATAACAAGCATCAATTCTTGTTTTAGTCTCTATTCGTTTCGAGATTTGGAACCAAGA
585 CCTTAAATATAACAAGCATCGATTCTTGTTTTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGA
1002882 ACACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTC
650 ACACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTC
*
1002947 CACTGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACATGAATAGTCTTACGAATC
715 CACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACATGAATAGTCTTACGAATC
*
1003012 CCCATTTTTTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCAGTAGGACAGACGATATTGAT
780 CCCA-TTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGTAGGACAGACGATATTGAT
* *
1003077 GCTTTAATAGCACAAGAAAGGCTTTCTTTCCCCCAATTTTTACAAACTGTAAGTTCATGCTCAAA
844 GCTTTAATATCACAAGAAAGGCTTTCTTTCCCCTAATTTTTACAAACTGTAAGTTCATGCTCAAA
*
1003142 TAAGACAAACCTAGATTCTAGTAATGATCTTTATTCATTTTGTG
909 TAAGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTG
*
1003186 ATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGC
1 ATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGA
* * *
1003251 AAATCTTTTCTTTGGTTTATTTCCCTTAAAATCAAAATTCATCTATTAAATACGGCAAACATCGA
66 AAATCTTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGGCAAGCATCGA
1003316 TTCTCATAAGAGTCTCCCTTTTTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATA
131 TTCTCATAAGAGTCTCCCTTTTTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATA
* *
1003381 CATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCATCGTTTTTTATAGAATCAAA
196 CATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAA
* *
1003446 GTTTGTCTCTTAAATAACAAAAACTTAAATAGTCATACAAATCCCTATTCATTTCAGGATTACGC
261 GTTTGTCTCTTAAATAACACAAACTTAAATAGTCATACAAATCCCCATTCATTTCAGGATTACGC
1003511 ACCATAAACATAGTCTTCTCACTAGGATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTT
326 ACCATAAACATAGTCTTCTCACTAGGATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTT
1003576 TTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAATTATGGATTCTAGTA
391 TTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAATTATGGATTCTAGTA
1003641 AGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATAT
456 AGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATAT
1003706 TGATGATTTTTGCTTGCATGGAAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCC
521 TGATGATTTTTGCTTGCATGGAAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCC
*
1003771 CTTAAATATAACAAGCATCGATTCTTGTTTTAGTCTCTATTCTTTTCGAGATTTGGAGCCAAGAA
586 CTTAAATATAACAAGCATCGATTCTTGTTTTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAA
*
1003836 CACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTTTCGCAAGAAAAGGTTTCCTTTCC
651 CACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCC
1003901 ACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACATGAATAGTCTTACGAATCC
716 ACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACATGAATAGTCTTACGAATCC
1003966 CCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGTAGGACAGACGATATTGATGC
781 CCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGTAGGACAGACGATATTGATGC
*
1004031 TTTAATATCACAAGAAAGGCTTTCTTTCCCCTAATTTTTGCAAACTGTAAGTTCATGCTCAAATA
846 TTTAATATCACAAGAAAGGCTTTCTTTCCCCTAATTTTTACAAACTGTAAGTTCATGCTCAAATA
1004096 AGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTG
911 AGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTG
1004138 ATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGA
1 ATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGA
* *
1004203 AAATATTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGACAAGCATCGA
66 AAATCTTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGGCAAGCATCGA
*
1004268 TTCTCATAAGAGTCTCCCTATTTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATA
131 TTCTCATAAGAGTCTCCCTTTTTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATA
*
1004333 CTTGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTTAT---ATCAAA
196 CATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAA
*
1004395 GTTTGTCTCTTAAATAACACAAACTTAAATAGTCATACAAATCCCCATTCATTTCACGATTACGC
261 GTTTGTCTCTTAAATAACACAAACTTAAATAGTCATACAAATCCCCATTCATTTCAGGATTACGC
1004460 ACCATAAACATAGTCTTCTCACTAGGATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTT
326 ACCATAAACATAGTCTTCTCACTAGGATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTT
1004525 TTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAATTATGGATTCTAGTA
391 TTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAATTATGGATTCTAGTA
1004590 AGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATAT
456 AGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATAT
1004655 TGATGATTTTTGCTTGCATGGAAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCC
521 TGATGATTTTTGCTTGCATGGAAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCC
1004720 CTTAAATATAACAAGCATCGATTCTTGTTTTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAA
586 CTTAAATATAACAAGCATCGATTCTTGTTTTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAA
*
1004785 CACATTCCCTTCATTAGGATACATGGCCTTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCC
651 CACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCC
*
1004850 ACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACATGAATAGCCTTACGAATCC
716 ACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACATGAATAGTCTTACGAATCC
1004915 CCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGTAGGACAGACGATATTGATGC
781 CCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGTAGGACAGACGATATTGATGC
* * *
1004980 CTTAATATCACAAGAAAGGCTTTCTTTCCCTTAATTTTTGCAAACTGTAAGTTCATGCTCAAATA
846 TTTAATATCACAAGAAAGGCTTTCTTTCCCCTAATTTTTACAAACTGTAAGTTCATGCTCAAATA
1005045 AGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTG
911 AGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTG
1005087 ATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGA
1 ATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGA
*
1005152 AAATCTTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGACAAGCATCGA
66 AAATCTTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGGCAAGCATCGA
* *
1005217 TTCTCATAAGAGTCTCCCTGTTTTTTGAGATTAGGAATTAAGAACACATTCCCTTTATTAGAATA
131 TTCTCATAAGAGTCTCCCTTTTTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATA
*
1005282 CTTGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAA
196 CATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAA
*
1005347 GTTTGTCTCTTAAATAACACAAACTTAAATAGTCATACAAATCCCCATTCATTTCACGATTACGC
261 GTTTGTCTCTTAAATAACACAAACTTAAATAGTCATACAAATCCCCATTCATTTCAGGATTACGC
*
1005412 ACCATAAACATAGTCTTCTCACTAGGATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTG
326 ACCATAAACATAGTCTTCTCACTAGGATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTT
1005477 TTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAATTATGGATTCTAGTA
391 TTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAATTATGGATTCTAGTA
1005542 AGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATAT
456 AGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATAT
* * *
1005607 TGATGATTTTTGCTTGCATGGAAATTTCTTTTTTGCCCTATTTTTCTCACAATCAAAATTCATCC
521 TGATGATTTTTGCTTGCATGGAAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCC
1005672 CTTAAATATAACAAGCATCGATTCTTGTTTTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAA
586 CTTAAATATAACAAGCATCGATTCTTGTTTTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAA
* * *
1005737 CACATTCCATTCATTAGGATACATTACATTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCC
651 CACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCC
* * * *
1005802 ACCATTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAATATCAATAGTGTTACGAATCC
716 ACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACATGAATAGTCTTACGAATCC
*
1005867 CCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGTGGGACAGACGATATTGATGC
781 CCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGTAGGACAGACGATATTGATGC
** *
1005932 TTTAATATTGCAAGAAAGGCTTTCTTTCCCCCAATTTTTACAAACTGTAAGTTCATGCTCAAATA
846 TTTAATATCACAAGAAAGGCTTTCTTTCCCCTAATTTTTACAAACTGTAAGTTCATGCTCAAATA
1005997 AGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTG
911 AGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTG
1006039 ATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGA
1 ATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGA
* *
1006104 AAATCTTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATGCATTAAATAGGGCAAGCATCGA
66 AAATCTTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGGCAAGCATCGA
1006169 TTCTCATAAGAGTCTCCCTTTTTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATA
131 TTCTCATAAGAGTCTCCCTTTTTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATA
* * *
1006234 CATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTCCTTTGCACCATTTTTTATATAATCAAA
196 CATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAA
* * * *
1006299 GTTTGTCTCTTAAATAACGCAAACTTAAACAGTCATACAAATCCCCATTCATTTCGGGATTAGGC
261 GTTTGTCTCTTAAATAACACAAACTTAAATAGTCATACAAATCCCCATTCATTTCAGGATTACGC
* *
1006364 ACCATAAACATAGTCTTCTCACTAAGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTT
326 ACCATAAACATAGTCTTCTCACTAGGATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTT
* *
1006429 TTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATTCCTCAAATGAGACAATCATGGATTCTAGTA
391 TTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAATTATGGATTCTAGTA
*
1006494 AGGATCTTCATTCATTTTGTGATTAGACACTATAAACACATTT-TCCGCATTAGGATAAATTATA
456 AGGATCTTCATTCATTTTGTGATTAGACACTATAAACAC-TTTCTCCGCATTAGGATAAATGATA
*
1006558 TTGATGATTTTTGCTTGCATTGAAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATC
520 TTGATGATTTTTGCTTGCATGGAAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATC
* *
1006623 CCTAAAATATAACAAGCATCGATTCTTGTTTTAGTCTCTATTCGTTTCGAGATTTGGAACCAAGA
585 CCTTAAATATAACAAGCATCGATTCTTGTTTTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGA
1006688 ACACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTC
650 ACACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTC
*
1006753 CACTGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACATGAATAGTCTTACGAATC
715 CACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACATGAATAGTCTTACGAATC
1006818 CCCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGTAGGACAGACGATATTGATG
780 CCCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGTAGGACAGACGATATTGATG
* * *
1006883 CTTTAAAATCACAAGAAAGGCTTTCTTTCCCTTAATTTTTGCAAACTGTAAGTTCATGCTCAAAT
845 CTTTAATATCACAAGAAAGGCTTTCTTTCCCCTAATTTTTACAAACTGTAAGTTCATGCTCAAAT
1006948 AAGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTG
910 AAGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTG
*
1006991 ATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGC
1 ATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGA
*
1007056 AAATCTTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGACAAGCATCGA
66 AAATCTTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGGCAAGCATCGA
*
1007121 TTCTCATAAGAGTCTCCCTGTTTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATA
131 TTCTCATAAGAGTCTCCCTTTTTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATA
*
1007186 CTTGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAA
196 CATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAA
*
1007251 GTTTGTCTCTTAAATAACACAAACTTAAATAGTCATACAAATCCCCATTCATTTCATGATTACGC
261 GTTTGTCTCTTAAATAACACAAACTTAAATAGTCATACAAATCCCCATTCATTTCAGGATTACGC
*
1007316 ACCATAGACATAGTCTTCTCACTAGGATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTT
326 ACCATAAACATAGTCTTCTCACTAGGATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTT
1007381 TTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAATTATGGATTCTAGTA
391 TTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAATTATGGATTCTAGTA
1007446 AGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATAT
456 AGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATAT
1007511 TGATGATTTTTGCTTGCATGGAAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCC
521 TGATGATTTTTGCTTGCATGGAAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCC
1007576 CTTAAATATAACAAGCATCGATTCTTGTTTTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAA
586 CTTAAATATAACAAGCATCGATTCTTGTTTTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAA
1007641 CACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCC
651 CACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCC
*
1007706 ACCGTTTTCGATAGAATCAAAGTTCCTCTTTTAATTAAGACAAACATGAATAGTCTTACGAATCC
716 ACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACATGAATAGTCTTACGAATCC
* *
1007771 CCATTTTTTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCAGTAGGACAGAGGATATTGATG
781 CCA-TTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGTAGGACAGACGATATTGATG
*
1007836 CTTTAATATCACAAGAAAGGCTTTCTTTCCCCCAATTTTTACAAACTGTAAGTTCATGCTCAAAT
845 CTTTAATATCACAAGAAAGGCTTTCTTTCCCCTAATTTTTACAAACTGTAAGTTCATGCTCAAAT
1007901 AAGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTG
910 AAGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTG
1007944 ATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGA
1 ATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGA
*
1008009 AAATCTTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATGAAATACGGCAAGCATCGA
66 AAATCTTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGGCAAGCATCGA
*
1008074 TTCTCATAAGAGTCTCCCTGTTTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATA
131 TTCTCATAAGAGTCTCCCTTTTTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATA
* *
1008139 CTTGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAT
196 CATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAA
*
1008204 GTTTGTCTCTTAAATAACACAAACTTAAATAGTCATACAAATCCCCATTCATTTCATGATTACGC
261 GTTTGTCTCTTAAATAACACAAACTTAAATAGTCATACAAATCCCCATTCATTTCAGGATTACGC
1008269 ACCATAAACATAGTCTTCTCACTAGGATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTT
326 ACCATAAACATAGTCTTCTCACTAGGATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTT
1008334 TTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAATTATGGATTCTAGTA
391 TTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAATTATGGATTCTAGTA
1008399 AGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATAT
456 AGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATAT
* *
1008464 TGATGATTTTTGCTTGCATGGAAATTTCTTTTTTGCCCTATTTTTCTCAAAATCAAAATTCATCC
521 TGATGATTTTTGCTTGCATGGAAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCC
1008529 CTTAAATATAACAAGCATCGATTCTTGTTTTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAA
586 CTTAAATATAACAAGCATCGATTCTTGTTTTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAA
* * *
1008594 CACATTCCATTCATTAGGATACATTACATTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCC
651 CACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCC
* * * *
1008659 ACCATTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAATATCAATAGTGTTACGAATCC
716 ACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACATGAATAGTCTTACGAATCC
* *
1008724 CCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTAGTGGGACAGACGATATTGATGC
781 CCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGTAGGACAGACGATATTGATGC
**
1008789 TTTAATATTTTGCAAGAAAGGCTTTCTTTCCCCTAATTTTTACAAACTGTAAGTTCATGCTCAAA
846 TTTAATA--TCACAAGAAAGGCTTTCTTTCCCCTAATTTTTACAAACTGTAAGTTCATGCTCAAA
1008854 TAAGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTG
909 TAAGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTG
*
1008898 ATTAGGCACTATAAAGACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGA
1 ATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGA
*
1008963 AAATCTTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATGCATTAAATACGGCAAGCATCGA
66 AAATCTTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGGCAAGCATCGA
*
1009028 TTCTCATAAGAGTCTCCCTTTTTTTTTAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATA
131 TTCTCATAAGAGTCTCCCTTTTTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATA
* * * *
1009093 CATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTCCTTTGCACCATTTCTTATATAATCAAA
196 CATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAA
* * *
1009158 GTTTGTCTCTTAAATAACACAAACTTAAACAGTCATACAAATCCCCATTCATTTCGGGATTAGGC
261 GTTTGTCTCTTAAATAACACAAACTTAAATAGTCATACAAATCCCCATTCATTTCAGGATTACGC
* *
1009223 ACCATAAACATAGTCTTCTCACTAAGATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTT
326 ACCATAAACATAGTCTTCTCACTAGGATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTT
*
1009288 TTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAATCATGGATTCTAGTA
391 TTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAATTATGGATTCTAGTA
*
1009353 AGGATCTTCATTCATTTTGTGATTAGACACTATAAACACATTT-TCCGCATTAGGATAAATTATA
456 AGGATCTTCATTCATTTTGTGATTAGACACTATAAACAC-TTTCTCCGCATTAGGATAAATGATA
*
1009417 TTGATGATTTTTGCTTGCATTGAAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATC
520 TTGATGATTTTTGCTTGCATGGAAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATC
*
1009482 CCTAAAATATAACAAGCATCGATTCTTGTTTTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGA
585 CCTTAAATATAACAAGCATCGATTCTTGTTTTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGA
1009547 ACACATTCCCTTCATTAGGATACATGACCT
650 ACACATTCCCTTCATTAGGATACATGACCT
1009577 CAATACAAGG
Statistics
Matches: 16312, Mismatches: 514, Indels: 58
0.97 0.03 0.00
Matches are distributed among these distances:
945 3 0.00
946 913 0.06
948 1 0.00
949 939 0.06
950 1 0.00
951 3675 0.23
952 6353 0.39
953 3678 0.23
954 746 0.05
955 3 0.00
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.36
Consensus pattern (952 bp):
ATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGA
AAATCTTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGGCAAGCATCGA
TTCTCATAAGAGTCTCCCTTTTTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATA
CATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAA
GTTTGTCTCTTAAATAACACAAACTTAAATAGTCATACAAATCCCCATTCATTTCAGGATTACGC
ACCATAAACATAGTCTTCTCACTAGGATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTT
TTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAATTATGGATTCTAGTA
AGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATAT
TGATGATTTTTGCTTGCATGGAAATTTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCC
CTTAAATATAACAAGCATCGATTCTTGTTTTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAA
CACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCC
ACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACATGAATAGTCTTACGAATCC
CCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGTAGGACAGACGATATTGATGC
TTTAATATCACAAGAAAGGCTTTCTTTCCCCTAATTTTTACAAACTGTAAGTTCATGCTCAAATA
AGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTG
Found at i:1009850 original size:330 final size:330
Alignment explanation
Indices: 1009249--1009901 Score: 1191
Period size: 330 Copynumber: 2.0 Consensus size: 330
1009239 TCTCACTAAG
*
1009249 ATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCT
1 ATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCT
1009314 AAGTTCATGCCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAG
66 AAGTTCATGCCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAG
* * *
1009379 ACACTATAAACACATTTTCCGCATTAGGATAAATTATATTGATGATTTTTGCTTGCATTGAAATT
131 ACACTATAAACACATTTTCCGCATTAGGATAAATGATATTGATGATTTTCGCTTGCATGGAAATT
*
1009444 TCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTAAAATATAACAAGCATCGATTCTT
196 TCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTAAAATATAACAAGCATCAATTCTT
* *
1009509 GTTTTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGA
261 GTTTTAGTCTCTATTCTTTTCGAGATTTAGAACCAAGAACACATTCCATTCATTAGGATACATGA
1009574 CCTCA
326 CCTCA
1009579 ATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCT
1 ATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCT
1009644 AAGTTCATGCCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAG
66 AAGTTCATGCCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAG
*
1009709 ACACTATAAACAC-TTTCTCCGCATTAGGATAAATGATATTGATGATTTTCGTTTGCATGGAAAT
131 ACACTATAAACACATTT-TCCGCATTAGGATAAATGATATTGATGATTTTCGCTTGCATGGAAAT
* * *
1009773 TTCTTTTTTGCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCAATTCT
195 TTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTAAAATATAACAAGCATCAATTCT
1009838 TGTTTTAGTCTCTATTCTTTTCGAGATTTAGAACCAAGAACACATTCCATTCATTAGGATACAT
260 TGTTTTAGTCTCTATTCTTTTCGAGATTTAGAACCAAGAACACATTCCATTCATTAGGATACAT
1009902 TACATTGATG
Statistics
Matches: 311, Mismatches: 11, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
329 3 0.01
330 308 0.99
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (330 bp):
ATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCT
AAGTTCATGCCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAG
ACACTATAAACACATTTTCCGCATTAGGATAAATGATATTGATGATTTTCGCTTGCATGGAAATT
TCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTAAAATATAACAAGCATCAATTCTT
GTTTTAGTCTCTATTCTTTTCGAGATTTAGAACCAAGAACACATTCCATTCATTAGGATACATGA
CCTCA
Found at i:1010296 original size:476 final size:475
Alignment explanation
Indices: 1009605--1015235 Score: 6193
Period size: 476 Copynumber: 11.8 Consensus size: 475
1009595 CTTTGGTTTC
* * * * *
1009605 GCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAATC
1 GCAAGAAAGGCTTTTTTCCCACCAACTTTTGCAAACTCTAAGTTCATGCCTCAAATAAGACAAAC
* ** *
1009670 ATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCCGCATTA
66 ATAGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACAATCTCCGCACTA
* * *
1009735 GGATAAATGATATTGATGATTTTCGTTTGCATG-G-AAAT-TTCTTTTTTGCCCTATTTTTCTCA
131 GGATAAATGATATTGATGATTTTC-TTTGC-TGTGAAAATCTT-TTCTTTGCTCTATTTCTCTCA
* * * ** ***
1009797 AAATCAAAATTCATCCCTTAAATATAACAAGCATCAATTCTTGTTTTAGTCTCTATTCTTTTCGA
193 AAATCAAAATTCATCCATTAAATACAACAAGCATCGATTCTCATAAGAGTCTCTATTCTTTTCGA
* * * * *
1009862 GATTTAGAACCAAGAACACATTCCATTCATTAGGATACATTACATTGATGATTTGGTTTCGCAAG
258 GA-TTAGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGTTTTGGTGTCACAAG
* * * *
1009927 AAAAGGTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTCCTCTTTTAATTAAGACAAACATCA
322 AAAAGCTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACATAA
* *
1009992 ATAGTCTTATGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGTGGGA
387 ATAGTCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGTAGGA
*
1010057 CAAACGATATTGATGCTTTAATATT
452 TAAA-GATATTGATGCTTTAATATT
* * *
1010082 GCAAGAAAGGCTTTCTTTCCC-CCAATTTTTACAAACTGTAAGTTCATG-CTCAAATAAGACAAA
1 GCAAGAAAGGCTTT-TTTCCCACCAACTTTTGCAAACTCTAAGTTCATGCCTCAAATAAGACAAA
* * * **
1010145 CCTAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
65 CATAGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACAATCTCCGCACT
* * * * *
1010210 AGGACAAATGATATTGATGATTTTCTTTTCTGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAA
130 AGGATAAATGATATTGATGATTTTCTTTGCTGTGAAAATCTTTTCTTTGCTCTATTTCTCTCAAA
* ** ** * *
1010275 ATCAAAATTCATGCATTAAATACGGCAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTGAGA
195 ATCAAAATTCATCCATTAAATACAACAAGCATCGATTCTCATAAGAGTCTCTATTCTTTTCGAGA
** * *
1010340 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAA
260 TTA-GAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGTTTTGGTGTCACAAGAA
* ** ** * * *
1010405 AAGCTTTTCTTTCCATCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAT
324 AAGCTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACATAAAT
* * * ** * *
1010470 AGTCATACAAATCCCTA-TTCATTTCAGGATTACGCACCATAAACATAGTCTTCTCACT-GAGAT
389 AGTCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGTAG-GAT
* **
1010533 ACAAGGTATTGATGCTTTGGT-TT
453 A-AAGATATTGATGCTTTAATATT
* * * * *
1010556 CGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAT
1 -GCAAGAAAGGCTTTTTTCCCACCAACTTTTGCAAACTCTAAGTTCATGCCTCAAATAAGACAAA
* * * *
1010621 CATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACATTTTCCGCATT
65 CATAGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACAATCTCCGCACT
* * * ** *
1010686 AGGATAAATTATATTGATGATTTT-TGCTTGCAT-TGAAATTTCCTTT-TTCCCT-TATTTTTCT
130 AGGATAAATGATATTGATGATTTTCT--TTGC-TGTGAAA-ATCTTTTCTTTGCTCTATTTCTCT
* * ** ***
1010747 CAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTTTAGTCTCTATTCTTTTC
191 CAAAATCAAAATTCATCCATTAAATACAACAAGCATCGATTCTCATAAGAGTCTCTATTCTTTTC
* * * * *
1010812 GAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTTTCGCA
256 GAGA-TTAGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGTTTTGGTGTCACA
*
1010877 AGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACAT
320 AGAAAAGCTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACAT
* *
1010942 GAATAGTCTTACGAATCCCCATTTTTTGTCAGGATTAGGCACCATAAACATAGTCTTCTCAGTAG
385 AAATAGTCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGTAG
* *
1011007 GATAGACGATATTGATGCTTTAATATC
450 GATA-AAGATATTGATGCTTTAATATT
* * *
1011034 ACAAGAAAGGCTTTCTTTCCC-CCAATTTTTGCAAACTGTAAGTTCATG-CTCAAATAAGACAAA
1 GCAAGAAAGGCTTT-TTTCCCACCAACTTTTGCAAACTCTAAGTTCATGCCTCAAATAAGACAAA
* * * **
1011097 CCTAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
65 CATAGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACAATCTCCGCACT
* * * * * * *
1011162 AGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTCGGTCTATTTCCCTTAAA
130 AGGATAAATGATATTGATGATTTTCTTTGCTGTGAAAATCTTTTCTTTGCTCTATTTCTCTCAAA
* ** * ** * *
1011227 ATCAAAATTCATGCATTAAATACGGCAGGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTGAGA
195 ATCAAAATTCATCCATTAAATACAACAAGCATCGATTCTCATAAGAGTCTCTATTCTTTTCGAGA
** *
1011292 TTAGGAATTAAGAACACATTCCCTTCATT-GGAATACATGACATTGTTGTTTTGGTGTCACAAGA
260 TTA-GAACCAAGAACACATTCCCTTCATTAGG-ATACATGACATTGATGTTTTGGTGTCACAAGA
* ** ** * * *
1011356 AAAGCTTTTCTTTCCATCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAA
323 AAAGCTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACATAAA
* * * ** * * *
1011421 CAGTCATACAAATCCCCA-TTCATTTCGGGATTAGGCACC-TAAAACATAGTCTTCTCACTAAGA
388 TAGTCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACCAT-AAACATAGTCTTCTCAGTAGGA
* * ** *
1011484 TACAAGGTATTGACGCTTTGGTTTT
452 TA-AAGATATTGATGCTTTAATATT
* * * * *
1011509 GCAAGAAAGGCTTTTTTCCCACCAACATTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAATC
1 GCAAGAAAGGCTTTTTTCCCACCAACTTTTGCAAACTCTAAGTTCATGCCTCAAATAAGACAAAC
* ** *
1011574 ATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCCGCATTA
66 ATAGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACAATCTCCGCACTA
* * *
1011639 GGATAAATGATATTGATGATTTTCGTTTGCATG-G-AAAT-TTCTTTTTTGCCCTATTTTTCTCA
131 GGATAAATGATATTGATGATTTTC-TTTGC-TGTGAAAATCTT-TTCTTTGCTCTATTTCTCTCA
* * * ** ***
1011701 AAATCAAAATTCATCCCTTAAATATAACAAGCATCAATTCTTGTTTTAGTCTCTATTCTTTTCGA
193 AAATCAAAATTCATCCATTAAATACAACAAGCATCGATTCTCATAAGAGTCTCTATTCTTTTCGA
* * * * *
1011766 GATTTAGAACCAAGAACACATTCCATTCATTAGGATACATTACATTGATGCTTTGGTTTCGCAAG
258 GA-TTAGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGTTTTGGTGTCACAAG
* * * * *
1011831 AAAAGGTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTCCTCTTTTAATTAAGACAAATATCA
322 AAAAGCTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACATAA
* *
1011896 ATAGTCTTATGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGTGGGA
387 ATAGTCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGTAGGA
* *
1011961 CAGACGATATTGATGCTTTAATATT
452 TA-AAGATATTGATGCTTTAATATT
* * *
1011986 GCAAGAAAGGCTTTCTTTCCC-CCAATTTTTACAAACTGTAAGTTCATG-CTCAAATAAGACAAA
1 GCAAGAAAGGCTTT-TTTCCCACCAACTTTTGCAAACTCTAAGTTCATGCCTCAAATAAGACAAA
* * * * * **
1012049 CCTAGATTCTAGTAATGTTTTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
65 CATAGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACAATCTCCGCACT
* * * * * *
1012114 AGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAA
130 AGGATAAATGATATTGATGATTTTCTTTGCTGTGAAAATCTTTTCTTTGCTCTATTTCTCTCAAA
* ** ** * *
1012179 ATCAAAATTCATGCATTAAATACGGCAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTGAGA
195 ATCAAAATTCATCCATTAAATACAACAAGCATCGATTCTCATAAGAGTCTCTATTCTTTTCGAGA
* * * *
1012244 TTAGGACTTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAA
260 TTAGAAC-CAAGAACACATTCCCTTCATTAGGATACATGACATTGATGTTTTGGTGTCACAAGAA
* * * ** * ** * * * *
1012309 AAGCTTTCCTTTGCACCATTTTTTATATAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAC
324 AAGCTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACATAAAT
* * ** * * *
1012374 AGTCATACAAATCCCCA-TTCATTTCGGGATTAGGCACCATAAACATAGTCTTCTCACTAAGATA
389 AGTCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGTAGGATA
* **
1012438 CAAGGTATTGATGCTTTGGT-TT
454 -AAGATATTGATGCTTTAATATT
* * * * *
1012460 CGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAT
1 -GCAAGAAAGGCTTTTTTCCCACCAACTTTTGCAAACTCTAAGTTCATGCCTCAAATAAGACAAA
* * * *
1012525 CATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACATTTTCCGCATT
65 CATAGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACAATCTCCGCACT
* * * * *
1012590 AGGATAAATTATATTGATGATTTT-TGCTTGCAT-TG-AAAT-TTCCTT-TTTCCCCAATTTTTC
130 AGGATAAATGATATTGATGATTTTCT--TTGC-TGTGAAAATCTT--TTCTTTGCTCTATTTCTC
* * ** ***
1012650 TCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTTTAGTCTCTATTCTTTT
190 TCAAAATCAAAATTCATCCATTAAATACAACAAGCATCGATTCTCATAAGAGTCTCTATTCTTTT
* * * * *
1012715 CGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTTTCGC
255 CGAGA-TTAGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGTTTTGGTGTCAC
*
1012780 AAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACA
319 AAGAAAAGCTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACA
* *
1012845 TGAATAGTCTTACGAATCCCCATTTTTTGTCAGGATTAGGCACCATAAACATAGTCTTCTCAGTA
384 TAAATAGTCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGTA
* * *
1012910 GGACAGACGATATTGATGCTTTAATATC
449 GGATA-AAGATATTGATGCTTTAATATT
* * * *
1012938 ACAAGAAAGGCTTTCTTTCCC-CCAATTTTTACAAACTGTAAGTTCATG-CTCAAATAAGACAAA
1 GCAAGAAAGGCTTT-TTTCCCACCAACTTTTGCAAACTCTAAGTTCATGCCTCAAATAAGACAAA
* * * **
1013001 CCTAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
65 CATAGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACAATCTCCGCACT
* * * * * * * *
1013066 AGGACAAATGATATTGATGATTTTCTTTTCCGTGCAAATCTTTTCTTTGGTTTATTTCCCTTAAA
130 AGGATAAATGATATTGATGATTTTCTTTGCTGTGAAAATCTTTTCTTTGCTCTATTTCTCTCAAA
** ** * *
1013131 ATCAAAATTCATCCATTAAATACGGCAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTGAGA
195 ATCAAAATTCATCCATTAAATACAACAAGCATCGATTCTCATAAGAGTCTCTATTCTTTTCGAGA
** * *
1013196 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAA
260 TTA-GAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGTTTTGGTGTCACAAGAA
* ** ** * * *
1013261 AAGCTTTTCTTTCCATCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAT
324 AAGCTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACATAAAT
* * ** * * *
1013326 AGTCATACAAAT--CCATATTCATTTCAGGATTACGCACCATAAACATATTCTTCTCACTAGGAT
389 AGTCTTACGAATCCCCAT-TTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGTAGGAT
* * **
1013389 ACAAGGTATTGACGCTTTGGT-TT
453 A-AAGATATTGATGCTTTAATATT
* * * * *
1013412 CGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAT
1 -GCAAGAAAGGCTTTTTTCCCACCAACTTTTGCAAACTCTAAGTTCATGCCTCAAATAAGACAAA
* * * ** *
1013477 TATGGATTCTAGTAAGGATCTTCATTCATTTTTTGATTAGACACTATAAACACTTTCTCCGCATT
65 CATAGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACAATCTCCGCACT
* * *
1013542 AGGATAAATGATATTGATGATTTT-TGCTTGCATG-G-AAAT-TTCCTT-TTTCCCCTATTTTTC
130 AGGATAAATGATATTGATGATTTTCT--TTGC-TGTGAAAATCTT--TTCTTTGCTCTATTTCTC
* * ** ***
1013602 TCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTTGTTTTAGTCTCTATTCTTTT
190 TCAAAATCAAAATTCATCCATTAAATACAACAAGCATCGATTCTCATAAGAGTCTCTATTCTTTT
* * * * *
1013667 CGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACCTTGATGCTTTGGTTTCGC
255 CGAGA-TTAGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGTTTTGGTGTCAC
*
1013732 AAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACA
319 AAGAAAAGCTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACA
* *
1013797 TGAATAGTCTTACGAATCCCCATTTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTAGT
384 TAAATAGTCTTACGAATCCCCA-TTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGT
* * *
1013862 AGGACAGACGATATTGATGCTTTAATATC
448 AGGATA-AAGATATTGATGCTTTAATATT
* * * *
1013891 ACAAGAAATGCTTTCTTTCCC-CCAATTTTTGCAAACTGTAAGTTCATG-CTCAAATAAGACAAA
1 GCAAGAAAGGCTTT-TTTCCCACCAACTTTTGCAAACTCTAAGTTCATGCCTCAAATAAGACAAA
* * * **
1013954 CCTAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
65 CATAGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACAATCTCCGCACT
* * * * * *
1014019 AGGAAAAATGATATTGATGATTTTCTTTTCTGTGAAAATATTTTCTTTGGTCTATTTCACTTAAA
130 AGGATAAATGATATTGATGATTTTCTTTGCTGTGAAAATCTTTTCTTTGCTCTATTTCTCTCAAA
* *
1014084 ATCAAAATTCATCCATTAAATACGACAAGCATCGATTCTCATAAGAGTCTCCCTGTT-TTTT-GA
195 ATCAAAATTCATCCATTAAATACAACAAGCATCGATTCTCATAAGAGTCT--CTATTCTTTTCGA
** * * *
1014147 GATTAGGAATTAAGAACACATTCCCTTCATTAGAATACTTGACATTGTTGTTTTGGTGTCACAAG
258 GATTA-GAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGTTTTGGTGTCACAAG
* ** ** * *
1014212 AAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACATAA
322 AAAAGCTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACATAA
* * ** * * *
1014277 ATAGTCATACAAATCCCCA-TTCATTTCACGATTACGCACCATAAACATAGTCTTCTCACTAGGA
387 ATAGTCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGTAGGA
* * **
1014341 TACAAGGTATTGACGCTTTGGT-TT
452 TA-AAGATATTGATGCTTTAATATT
* * * * *
1014365 CGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAT
1 -GCAAGAAAGGCTTTTTTCCCACCAACTTTTGCAAACTCTAAGTTCATGCCTCAAATAAGACAAA
* ** *
1014430 CATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCCGCATT
65 CATAGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACAATCTCCGCACT
* * * * *
1014495 AGGATAAATGATATT-ACTGATTTT-TGCTTGC-GTGGAAAT-TTCTTTTTTCCCCTATTTTTCT
130 AGGATAAATGATATTGA-TGATTTTCT--TTGCTGTGAAAATCTT-TTCTTTGCTCTATTTCTCT
* * * ** *** *
1014556 CAAAATCAAAATTCATCCCTTAAATATAACAAGCATCAATTCTTGTTTTAATCTCTATTCTTTTC
191 CAAAATCAAAATTCATCCATTAAATACAACAAGCATCGATTCTCATAAGAGTCTCTATTCTTTTC
* * * *
1014621 GAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTTTCGCA
256 GAGA-TTAGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGTTTTGGTGTCACA
*
1014686 AGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACAT
320 AGAAAAGCTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACAT
* * * * *
1014751 GAATAGTCTTAGGAATCCCCATTTTTGTTTTCAGAATTAGGCACCATAAACATAGTCTCCTCCGT
385 AAATAGTCTTACGAATCCCCA-TTTT-TTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGT
* * * *
1014816 CGGACAGATGATATTGATGCTTTAATATC
448 AGGATA-AAGATATTGATGCTTTAATATT
** * * *
1014845 ATAAGAAAGGCTTTCTTTCCC-CCAATTTTTACAAACTATAAGTTCATG-CTCAAATAAGACAAA
1 GCAAGAAAGGCTTT-TTTCCCACCAACTTTTGCAAACTCTAAGTTCATGCCTCAAATAAGACAAA
* * **
1014908 CATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
65 CATAGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACAATCTCCGCACT
* * * *
1014973 AGGACAAATGATATTGATGATTTTCTTT-TTCGTGAAAATCTTTTCTTTGGTCTATTTC-CGTTA
130 AGGATAAATGATATTGATGATTTTCTTTGCT-GTGAAAATCTTTTCTTTGCTCTATTTCTC-TCA
** * ** * *
1015036 AAATCAAAATTCATCCATTAAATACGGCAAGCATCGATTCTCATAAGAGTTTCCCTTTTTTTTGA
193 AAATCAAAATTCATCCATTAAATACAACAAGCATCGATTCTCATAAGAGTCTCTATTCTTTTCGA
** * *
1015101 GATTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAG
258 GATTA-GAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGTTTTGGTGTCACAAG
** ** * * *
1015166 AAAAGCTTTTCTTTCCACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAA
322 AAAAGCTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACATAA
1015231 ATAGT
387 ATAGT
1015236 TTGGTTTCGC
Statistics
Matches: 4214, Mismatches: 837, Indels: 205
0.80 0.16 0.04
Matches are distributed among these distances:
474 54 0.01
475 507 0.12
476 2496 0.59
477 641 0.15
478 411 0.10
479 98 0.02
480 7 0.00
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.36
Consensus pattern (475 bp):
GCAAGAAAGGCTTTTTTCCCACCAACTTTTGCAAACTCTAAGTTCATGCCTCAAATAAGACAAAC
ATAGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACAATCTCCGCACTA
GGATAAATGATATTGATGATTTTCTTTGCTGTGAAAATCTTTTCTTTGCTCTATTTCTCTCAAAA
TCAAAATTCATCCATTAAATACAACAAGCATCGATTCTCATAAGAGTCTCTATTCTTTTCGAGAT
TAGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGTTTTGGTGTCACAAGAAAA
GCTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAAACATAAATAG
TCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGTAGGATAAA
GATATTGATGCTTTAATATT
Found at i:1011428 original size:952 final size:951
Alignment explanation
Indices: 1009579--1015235 Score: 10179
Period size: 952 Copynumber: 5.9 Consensus size: 951
1009569 CATGACCTCA
1009579 ATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCT
1 ATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCT
1009644 AAGTTCATGCCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAG
66 AAGTTCATGCCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAG
* *
1009709 ACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTCGTTTGCATGGAAATT
131 ACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAATT
* *
1009774 TCTTTTTTGCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCAATTCTT
196 TCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCAATTCTT
* * *
1009839 GTTTTAGTCTCTATTCTTTTCGAGATTTAGAACCAAGAACACATTCCATTCATTAGGATACATTA
261 GTTTTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGA
* *
1009904 CATTGATGATTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTCC
326 CATTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCC
* * *
1009969 TCTTTTAATTAAGACAAACATCAATAGTCTTATGAATCCCCATTTTTTTTCAGGATTAGGCACCA
391 TCTCTTAATTAAGACAAACATGAATAGTCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACCA
* * **
1010034 TAAACATAGTCTTCTCAGTGGGACAAACGATATTGATGCTTTAATATTGCAAGAAAGGCTTTCTT
456 TAAACATAGTCTTCTCAGTAGGACAGACGATATTGATGCTTTAATATCACAAGAAAGGCTTTCTT
1010099 TCCCCCAATTTTTACAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGAT
521 TCCCCCAATTTTTACAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGAT
1010164 CTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATG
586 CTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATG
* *
1010229 ATTTTCTTTTCTGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATGCATTAA
651 ATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAA
1010294 ATACGGCAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTGAGATTAGGAATTAAGAACACAT
716 ATACGGCAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTGAGATTAGGAATTAAGAACACAT
*
1010359 TCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCATCGT
781 TCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGT
*
1010424 TTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAATAGTCATACAAATCCCTATT
846 TTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAATAGTCATACAAATCCCCATT
1010489 CATTTCAGGATTACGCACCATAAACATAGTCTTCTCACTGAG
911 CATTTCAGGATTACGCACCATAAACATAGTCTTCTCACT-AG
*
1010531 ATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCT
1 ATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCT
1010596 AAGTTCATGCCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAG
66 AAGTTCATGCCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAG
* *
1010661 ACACTATAAACACATTT-TCCGCATTAGGATAAATTATATTGATGATTTTTGCTTGCATTGAAAT
131 ACACTATAAACAC-TTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAAT
* *
1010725 TTCCTTTTTCCCTTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCT
195 TTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCAATTCT
1010790 TGTTTTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATG
260 TGTTTTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATG
*
1010855 ACCTTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTC
325 ACATTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTC
*
1010920 CTCTCTTAATTAAGACAAACATGAATAGTCTTACGAATCCCCATTTTTTGTCAGGATTAGGCACC
390 CTCTCTTAATTAAGACAAACATGAATAGTCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACC
*
1010985 ATAAACATAGTCTTCTCAGTAGGATAGACGATATTGATGCTTTAATATCACAAGAAAGGCTTTCT
455 ATAAACATAGTCTTCTCAGTAGGACAGACGATATTGATGCTTTAATATCACAAGAAAGGCTTTCT
*
1011050 TTCCCCCAATTTTTGCAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGA
520 TTCCCCCAATTTTTACAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGA
1011115 TCTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGAT
585 TCTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGAT
* *
1011180 GATTTTCTTTTCCGTGAAAATCTTTTCTTCGGTCTATTTCCCTTAAAATCAAAATTCATGCATTA
650 GATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTA
*
1011245 AATACGGCAGGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTGAGATTAGGAATTAAGAACACA
715 AATACGGCAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTGAGATTAGGAATTAAGAACACA
* *
1011310 TTCCCTTCATTGGAATACATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCATCG
780 TTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCG
*
1011375 TTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAACAGTCATACAAATCCCCAT
845 TTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAATAGTCATACAAATCCCCAT
* *
1011440 TCATTTCGGGATTAGGCACC-TAAAACATAGTCTTCTCACTAAG
910 TCATTTCAGGATTACGCACCAT-AAACATAGTCTTCTCACT-AG
* * *
1011483 ATACAAGGTATTGACGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAACATTTGTAAAGTCT
1 ATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCT
1011548 AAGTTCATGCCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAG
66 AAGTTCATGCCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAG
* *
1011613 ACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTCGTTTGCATGGAAATT
131 ACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAATT
* *
1011678 TCTTTTTTGCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCAATTCTT
196 TCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCAATTCTT
* * *
1011743 GTTTTAGTCTCTATTCTTTTCGAGATTTAGAACCAAGAACACATTCCATTCATTAGGATACATTA
261 GTTTTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGA
*
1011808 CATTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTCC
326 CATTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCC
* * * *
1011873 TCTTTTAATTAAGACAAATATCAATAGTCTTATGAATCCCCATTTTTTTTCAGGATTAGGCACCA
391 TCTCTTAATTAAGACAAACATGAATAGTCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACCA
* **
1011938 TAAACATAGTCTTCTCAGTGGGACAGACGATATTGATGCTTTAATATTGCAAGAAAGGCTTTCTT
456 TAAACATAGTCTTCTCAGTAGGACAGACGATATTGATGCTTTAATATCACAAGAAAGGCTTTCTT
*
1012003 TCCCCCAATTTTTACAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGTT
521 TCCCCCAATTTTTACAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGAT
*
1012068 TTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATG
586 CTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATG
*
1012133 ATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATGCATTAA
651 ATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAA
*
1012198 ATACGGCAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTGAGATTAGGACTTAAGAACACAT
716 ATACGGCAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTGAGATTAGGAATTAAGAACACAT
* * *
1012263 TCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTCCTTTGCACCAT
781 TCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGT
* *
1012328 TTTTTATATAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAACAGTCATACAAATCCCCATT
846 TTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAATAGTCATACAAATCCCCATT
* *
1012393 CATTTCGGGATTAGGCACCATAAACATAGTCTTCTCACTAAG
911 CATTTCAGGATTACGCACCATAAACATAGTCTTCTCACT-AG
*
1012435 ATACAAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCT
1 ATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCT
1012500 AAGTTCATGCCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAG
66 AAGTTCATGCCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAG
* *
1012565 ACACTATAAACACATTT-TCCGCATTAGGATAAATTATATTGATGATTTTTGCTTGCATTGAAAT
131 ACACTATAAACAC-TTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAAT
* *
1012629 TTCCTTTTTCCCCAATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCT
195 TTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCAATTCT
1012694 TGTTTTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATG
260 TGTTTTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATG
*
1012759 ACCTTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTC
325 ACATTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTC
*
1012824 CTCTCTTAATTAAGACAAACATGAATAGTCTTACGAATCCCCATTTTTTGTCAGGATTAGGCACC
390 CTCTCTTAATTAAGACAAACATGAATAGTCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACC
1012889 ATAAACATAGTCTTCTCAGTAGGACAGACGATATTGATGCTTTAATATCACAAGAAAGGCTTTCT
455 ATAAACATAGTCTTCTCAGTAGGACAGACGATATTGATGCTTTAATATCACAAGAAAGGCTTTCT
1012954 TTCCCCCAATTTTTACAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGA
520 TTCCCCCAATTTTTACAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGA
1013019 TCTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGAT
585 TCTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGAT
* *
1013084 GATTTTCTTTTCCGTGCAAATCTTTTCTTTGGTTTATTTCCCTTAAAATCAAAATTCATCCATTA
650 GATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTA
1013149 AATACGGCAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTGAGATTAGGAATTAAGAACACA
715 AATACGGCAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTGAGATTAGGAATTAAGAACACA
*
1013214 TTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCATCG
780 TTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCG
**
1013279 TTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAATAGTCATACAAATCCATAT
845 TTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAATAGTCATACAAATCCCCAT
*
1013344 TCATTTCAGGATTACGCACCATAAACATATTCTTCTCACTAGG
910 TCATTTCAGGATTACGCACCATAAACATAGTCTTCTCACTA-G
1013387 ATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCT
1 ATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCT
* *
1013452 AAGTTCATGCCTCAAATGAGACAATTATGGATTCTAGTAAGGATCTTCATTCATTTTTTGATTAG
66 AAGTTCATGCCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAG
1013517 ACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAATT
131 ACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAATT
*
1013582 TCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTT
196 TCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCAATTCTT
1013647 GTTTTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGA
261 GTTTTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGA
*
1013712 CCTTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCC
326 CATTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCC
1013777 TCTCTTAATTAAGACAAACATGAATAGTCTTACGAATCCCCATTTTTTTTTCAGGATTAGGCACC
391 TCTCTTAATTAAGACAAACATGAATAGTCTTACGAATCCCCA-TTTTTTTTCAGGATTAGGCACC
* *
1013842 ATAAACATAGTCTTCTTAGTAGGACAGACGATATTGATGCTTTAATATCACAAGAAATGCTTTCT
455 ATAAACATAGTCTTCTCAGTAGGACAGACGATATTGATGCTTTAATATCACAAGAAAGGCTTTCT
*
1013907 TTCCCCCAATTTTTGCAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGA
520 TTCCCCCAATTTTTACAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGA
*
1013972 TCTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACTAGGAAAAATGATATTGAT
585 TCTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGAT
* * *
1014037 GATTTTCTTTTCTGTGAAAATATTTTCTTTGGTCTATTTCACTTAAAATCAAAATTCATCCATTA
650 GATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTA
* *
1014102 AATACGACAAGCATCGATTCTCATAAGAGTCTCCCTGTTTTTTGAGATTAGGAATTAAGAACACA
715 AATACGGCAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTGAGATTAGGAATTAAGAACACA
* *
1014167 TTCCCTTCATTAGAATACTTGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCA
780 TTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCG
*
1014232 TTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACATAAATAGTCATACAAATCCCCAT
845 TTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAATAGTCATACAAATCCCCAT
*
1014297 TCATTTCACGATTACGCACCATAAACATAGTCTTCTCACTAGG
910 TCATTTCAGGATTACGCACCATAAACATAGTCTTCTCACTA-G
1014340 ATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCT
1 ATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCT
1014405 AAGTTCATGCCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAG
66 AAGTTCATGCCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAG
*
1014470 ACACTATAAACACTTTCTCCGCATTAGGATAAATGATATT-ACTGATTTTTGCTTGCGTGGAAAT
131 ACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGA-TGATTTTTGCTTGCATGGAAAT
*
1014534 TTCTTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCAATTCT
195 TTCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCAATTCT
*
1014599 TGTTTTAATCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATG
260 TGTTTTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATG
1014664 ACATTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTC
325 ACATTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTC
* *
1014729 CTCTCTTAATTAAGACAAACATGAATAGTCTTAGGAATCCCCATTTTTGTTTTCAGAATTAGGCA
390 CTCTCTTAATTAAGACAAACATGAATAGTCTTACGAATCCCCA-TTTT-TTTTCAGGATTAGGCA
* * * * *
1014794 CCATAAACATAGTCTCCTCCGTCGGACAGATGATATTGATGCTTTAATATCATAAGAAAGGCTTT
453 CCATAAACATAGTCTTCTCAGTAGGACAGACGATATTGATGCTTTAATATCACAAGAAAGGCTTT
* *
1014859 CTTTCCCCCAATTTTTACAAACTATAAGTTCATGCTCAAATAAGACAAACATAGATTCTAGTAAT
518 CTTTCCCCCAATTTTTACAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAAT
1014924 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTG
583 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTG
* *
1014989 ATGATTTTCTTTTTCGTGAAAATCTTTTCTTTGGTCTATTTCCGTTAAAATCAAAATTCATCCAT
648 ATGATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCAT
*
1015054 TAAATACGGCAAGCATCGATTCTCATAAGAGTTTCCCTTTTTTTTGAGATTAGGAATTAAGAACA
713 TAAATACGGCAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTGAGATTAGGAATTAAGAACA
1015119 CATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCAC
778 CATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCAC
1015184 CGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAATAGT
843 CGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAATAGT
1015236 TTGGTTTCGC
Statistics
Matches: 4524, Mismatches: 171, Indels: 18
0.96 0.04 0.00
Matches are distributed among these distances:
951 8 0.00
952 3147 0.70
953 934 0.21
954 435 0.10
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.36
Consensus pattern (951 bp):
ATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAGCAACTTTTGTAAAGTCT
AAGTTCATGCCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAG
ACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAATT
TCCTTTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCAATTCTT
GTTTTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGA
CATTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCC
TCTCTTAATTAAGACAAACATGAATAGTCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACCA
TAAACATAGTCTTCTCAGTAGGACAGACGATATTGATGCTTTAATATCACAAGAAAGGCTTTCTT
TCCCCCAATTTTTACAAACTGTAAGTTCATGCTCAAATAAGACAAACCTAGATTCTAGTAATGAT
CTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATG
ATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAA
ATACGGCAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTGAGATTAGGAATTAAGAACACAT
TCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGT
TTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAATAGTCATACAAATCCCCATT
CATTTCAGGATTACGCACCATAAACATAGTCTTCTCACTAG
Found at i:1016803 original size:475 final size:476
Alignment explanation
Indices: 1015248--1017290 Score: 2113
Period size: 475 Copynumber: 4.3 Consensus size: 476
1015238 GGTTTCGCAC
* * * * *
1015248 GAAAGGCTTTTTTCCC-CTCAACTTTTGTAATGTCTAAGTTCATGCCTCAAATGAGACAATCAT-
1 GAAAGGCTTTTTTCCCAC-CAATTTTTGCAAAGTCTAAGTTCATGCCTCAAATAAGACAAACATA
* *
1015311 GTATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCCGCATTAGG
65 G-ATTCTAATAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCCTCATTAGG
* * *
1015376 ATAAATGATATTGATGATTTTTGCTTGCATGGAAAT-TTCTT-TTTTCCCTTATTTTTCTCAAAA
129 ATAAATGATATTGATGATTTTTGTTTGCATGGAAATCTT-TTCTTTGCCC-TATTTTCCTCAAAA
* * *** *
1015439 TCAAAATTCATCCCTTAAATATAACAAGCATCAATTCTTGTTTTAGTCTCTATTCTTTCCAAAAT
192 TCAAAATTCATCCCTTAAATATAACAAGCATCGATTCTCGTAAGAGTCTCTATTCTTTCCAAGAT
* * * * *
1015504 TTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTTTCGCAAAAAA
257 TAGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTAATGCTTTGGTGTCGC-AAGAA
* * * * * * *
1015569 AAGGTTTTCTTTCCACTGTTTTCGATAGAGTCAACA-TTCCTTTCTTAATTAAGACAAACATGAA
321 AAGGTTTTCTTTTCACCGTTTTTGATAGAATCAA-AGTTTCTCTCTTAAATAAGACAAACATGAA
* * * * *
1015633 TAGTCATATGAATCCCCATT-TTTTTAGGATTCGGCACCAAAAACATAGTCTTCTC-TATAGGAC
385 TAGTCATACGAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTCAT-TAGGAC
* * * *
1015696 A-AACGATATTGATGCTTTGGCATCGCAA
449 ACAA-GATATTGACGCTTTGGTAACACAA
* * *
1015724 GAAAGGCTTTTTTCCC-CCAATTTTTGCAAAGTCTAAGTTCGTGCCTTAAATAAGACAAACATAT
1 GAAAGGCTTTTTTCCCACCAATTTTTGCAAAGTCTAAGTTCATGCCTCAAATAAGACAAACATAG
* * * * * *
1015788 ATTCCAATAATGATCTTCATTCATTTCGTGAGTAGACATTCTA-AAACA-ATT-TCCTCATTGGG
66 ATTCTAATAAGGATCTTCATTCATTTTGTGATTAGACA--CTATAAACACTTTCTCCTCATTAGG
* * * **
1015850 ATAAATGATATTGATGATTTTCT-TTTCCATGGAAATCTTTTCTTTGGCCTGTTACCCTCAAAAT
129 ATAAATGATATTGATGATTTT-TGTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTCAAAAT
* * * * * * * * ** ***
1015914 CAAAAATCTTCCTTTAAATATGATAAGCAACTATTCTCATAAGAGTCTCCCTTCTTTTTGAGATT
193 CAAAATTCATCCCTTAAATATAACAAGCATCGATTCTCGTAAGAGTCTCTATTCTTTCCAAGATT
* * * *
1015979 AGGAACTAAGAACACATTCCCTTCATTAGAATACATGACATTATTGTTTTGGTGTCACAAG-AAA
258 AGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTAATGCTTTGGTGTCGCAAGAAAA
* * * * *
1016043 GGCTTTTC-TTTCTACCGTTTTTGATAGAATCAAAGTTTGTCTCCTAAATAACACAAACTTAAAT
323 GG-TTTTCTTTTC-ACCGTTTTTGATAGAATCAAAGTTTCTCTCTTAAATAAGACAAACATGAAT
* * * *
1016107 AGTCATACTG-ATCCTCGTTCATTTCGGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATA
386 AGTCATAC-GAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGACA
* * *
1016171 CAAGGTATTAACGCTTTGGTTTA-ACAA
450 CAAGATATTGACGCTTTGG-TAACACAA
* * * ** * * *
1016198 GAAAGGCTTTTTTCCCACTAACTTTTGTATTGTATAAGTTCATGCCTCAAATGAGACAAACATGG
1 GAAAGGCTTTTTTCCCACCAATTTTTGCAAAGTCTAAGTTCATGCCTCAAATAAGACAAACATAG
* * * *
1016263 ATTCTAGTAAGGATCTTCATTCGTTTTGTGATTAGATACTACAAACACTTTCT-CTGCATTAGGA
66 ATTCTAATAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCCT-CATTAGGA
* *
1016327 TAAATGATATTGATGATTTTTGTTTGCATGGAAATCTTTTCTTTGCCCTATTTTACTTAAAATCA
130 TAAATGATATTGATGATTTTTGTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTCAAAATCA
** * * *** * *
1016392 AAATTCATCCCTTAAATATGGCACGCATCGATTTTCGTTTCAGTCTCTAGTCTTTCCAAGATTTG
195 AAATTCATCCCTTAAATATAACAAGCATCGATTCTCGTAAGAGTCTCTATTCTTTCCAAGATTAG
*
1016457 GAACCAAGAACACATTCCCTTCATTAGGATACATGACATTAATGCTTTGGTGTCGCAAGAAAAGG
260 GAACCAAGAACACATTCCCTTCATTAGAATACATGACATTAATGCTTTGGTGTCGCAAGAAAAGG
* * * * *
1016522 TTTT-TTTTCACCGTTTTTGACAGAATTAAAGTTTCTCTCTTAATTAAGACAAACATGGATAGTA
325 TTTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTCTCTCTTAAATAAGACAAACATGAATAGTC
* ** * * * * *
1016586 ATACGAATCCCTATTTTTTTCAGGATGAAGCACCATAAACATAGTCTTCTCAGTAGGACAGACGA
390 ATACGAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGACACAAGA
1016651 TATTGACGCTTTGGTAACACAA
455 TATTGACGCTTTGGTAACACAA
* * * * ** * *
1016673 GAAAAGCTTTCTTCCCACCAATTTTTGCAAGGTGTAAGTTTGTGCTTCAACTAAGACAAACATAG
1 GAAAGGCTTTTTTCCCACCAATTTTTGCAAAGTCTAAGTTCATGCCTCAAATAAGACAAACATAG
* * * * * **
1016738 ATTCTAACAATGTTCTTCATTTATTTTGTGATTA-AGCACTATAAGCACAATCTCCTCATTAGGA
66 ATTCTAATAAGGATCTTCATTCATTTTGTGATTAGA-CACTATAAACACTTTCTCCTCATTAGGA
* * * * * * * *
1016802 TAAATAATATTGGTGA-TTTTGTTTTGCGTAGAAACCTTTTCTTTGGCCTATTTTCCTTACAATC
130 TAAATGATATTGATGATTTTTG-TTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTCAAAATC
* * * ** ***
1016866 AGAAA-TCATCCTTTAAATATAATAAGCA-CGATTCTCAG-AAGAGTCTCAACACTTTTTGAGAT
194 A-AAATTCATCCCTTAAATATAACAAGCATCGATTCTC-GTAAGAGTCTCTATTCTTTCCAAGAT
* * * * ** * *
1016928 TAGGAACGAAAAACACATTTCCTTCATTAGAAAACATGACATTGTTGTTTTGGTGTATG-AAGAA
257 TAGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTAATGCTTTGGTGT-CGCAAGAA
* * * * *
1016992 AAGCTTTTCTTTTCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAATACAAACTTGAAT
321 AAGGTTTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTCTCTCTTAAATAAGACAAACATGAAT
* * *
1017057 AGTCATACTAATCCCCATTCATTTCAGGATTAGGCACCATAAACATGGTCTTCTCATTAGGATAC
386 AGTCATACGAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGACAC
* * ****
1017122 AAGGTATTGACGCATTGGTTTTGCAA
451 AAGATATTGACGCTTTGGTAACACAA
* * * *
1017148 GAAAGGCTTTTTTCTCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGG
1 GAAAGGCTTTTTTCCCACCAATTTTTGCAAAGTCTAAGTTCATGCCTCAAATAAGACAAACATAG
* *
1017213 ATTCTAGTAAGGATCTT-ATTCATTTTGTGATTAGGCACTATAAACACTTTCTCCTCATTAGGAT
66 ATTCTAATAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCCTCATTAGGAT
* *
1017277 AAATAAAATTGATG
131 AAATGATATTGATG
1017291 CTTTGGTTCT
Statistics
Matches: 1271, Mismatches: 264, Indels: 66
0.79 0.16 0.04
Matches are distributed among these distances:
472 9 0.01
473 62 0.05
474 368 0.29
475 626 0.49
476 198 0.16
477 8 0.01
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (476 bp):
GAAAGGCTTTTTTCCCACCAATTTTTGCAAAGTCTAAGTTCATGCCTCAAATAAGACAAACATAG
ATTCTAATAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCCTCATTAGGAT
AAATGATATTGATGATTTTTGTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTCAAAATCAA
AATTCATCCCTTAAATATAACAAGCATCGATTCTCGTAAGAGTCTCTATTCTTTCCAAGATTAGG
AACCAAGAACACATTCCCTTCATTAGAATACATGACATTAATGCTTTGGTGTCGCAAGAAAAGGT
TTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTCTCTCTTAAATAAGACAAACATGAATAGTCA
TACGAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGACACAAGAT
ATTGACGCTTTGGTAACACAA
Found at i:1017080 original size:950 final size:950
Alignment explanation
Indices: 1015248--1017290 Score: 2876
Period size: 950 Copynumber: 2.2 Consensus size: 950
1015238 GGTTTCGCAC
*
1015248 GAAAGGCTTTTTTCCC-CTCAACTTTTGTAATGTCTAAGTTCATGCCTCAAATGAGACAATCATG
1 GAAAGGCTTTTTTCCCACT-AACTTTTGTAATGTCTAAGTTCATGCCTCAAATGAGACAAACATG
* *
1015312 TATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCCGCATTAGGA
65 GATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCTGCATTAGGA
* *
1015377 TAAATGATATTGATGATTTTTGCTTGCATGGAAATTTCTTTTTTCCCTTATTTTTCTCAAAATCA
130 TAAATGATATTGATGATTTTTGCTTGCATGGAAATTTCTTTTTGCCCTTATTTTACTCAAAATCA
* *
1015442 AAATTCATCCCTTAAATATAACAAGCATCAATTCTTGTTTTAGTCTCTATTCTTTCCAAAATTTG
195 AAATTCATCCCTTAAATATAACAAGCATCAATTCTTGTTTCAGTCTCTAGTCTTTCCAAAATTTG
* *
1015507 GAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTTTCGCAAAAAAAAG
260 GAACCAAGAACACATTCCCTTCATTAGGATACATGACATTAATGCTTTGGTGTCGCAAAAAAAAG
* * * *
1015572 GTTTTCTTTCCACTGTTTTCGATAGAGTCAACATTCCTTTCTTAATTAAGACAAACATGAATAGT
325 GTTTTCTTTCCACCGTTTTCGACAGAATCAACATTCCTCTCTTAATTAAGACAAACATGAATAGT
* * ***
1015637 CATATGAATCCCCATTTTTTTAGGATTCGGCACCAAAAACATAGTCTTCTCTATAGGACAAACGA
390 AATACGAATCCCCATTTTTTTAGGATGAAGCACCAAAAACATAGTCTTCTCTATAGGACAAACGA
* * * * *
1015702 TATTGATGCTTTGGCATCGCAAGAAAGGCTTTTTTCCCCCAATTTTTGCAAAGTCTAAGTTCGTG
455 TATTGACGCTTTGGCAACACAAGAAAAGCTTTCTTCCCCCAATTTTTGCAAAGTCTAAGTTCGTG
* * * *
1015767 CCTTAAATAAGACAAACATATATTCCAATAATGATCTTCATTCATTTCGTGAGTAGACATTCTAA
520 CCTTAAATAAGACAAACATAGATTCCAACAATGATCTTCATTCATTTCGTGAGTAGACACTATAA
* * * * *
1015832 AACAATTTCCTCATTGGGATAAATGATATTGATGATTTTCTTTTCCATGGAAATCTTTTCTTTGG
585 AACAATCTCCTCATTAGGATAAATAATATTGATGATTTTCTTTTCCATAGAAACCTTTTCTTTGG
* * * * *
1015897 CCTGTTACCCTCAAAATCAAAAATCTTCCTTTAAATATGATAAGCAACTATTCTCATAAGAGTCT
650 CCTATTACCCTCAAAATCAAAAATCATCCTTTAAATATAATAAGCAACGATTCTCAGAAGAGTCT
* * * * *
1015962 CCCTTCTTTTTGAGATTAGGAACTAAGAACACATTCCCTTCATTAGAATACATGACATTATTGTT
715 CACTACTTTTTGAGATTAGGAACGAAAAACACATTCCCTTCATTAGAAAACATGACATTATTGTT
* *
1016027 TTGGTGTCACAAGAAAGGCTTTTCTTTCTACCGTTTTTGATAGAATCAAAGTTTGTCTCCTAAAT
780 TTGGTGTCACAAGAAAAGCTTTTCTTTCTACCATTTTTGATAGAATCAAAGTTTGTCTCCTAAAT
* * * *
1016092 AACACAAACTTAAATAGTCATACTGATCCTCGTTCATTTCGGGATTAGGCACCATAAACATAGTC
845 AACACAAACTTAAATAGTCATACTAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTC
*
1016157 TTCTCATTAGGATACAAGGTATTAACGCTTTGGTTTAACAA
910 TTCTCATTAGGATACAAGGTATTAACGCATTGGTTTAACAA
* *
1016198 GAAAGGCTTTTTTCCCACTAACTTTTGTATTGTATAAGTTCATGCCTCAAATGAGACAAACATGG
1 GAAAGGCTTTTTTCCCACTAACTTTTGTAATGTCTAAGTTCATGCCTCAAATGAGACAAACATGG
* * *
1016263 ATTCTAGTAAGGATCTTCATTCGTTTTGTGATTAGATACTACAAACACTTTCTCTGCATTAGGAT
66 ATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCTGCATTAGGAT
* *
1016328 AAATGATATTGATGATTTTTGTTTGCATGGAAATCTT-TTCTTTGCCC-TATTTTACTTAAAATC
131 AAATGATATTGATGATTTTTGCTTGCATGGAAAT-TTCTT-TTTGCCCTTATTTTACTCAAAATC
** * * *
1016391 AAAATTCATCCCTTAAATATGGCACGCATCGATT-TTCGTTTCAGTCTCTAGTCTTTCCAAGATT
194 AAAATTCATCCCTTAAATATAACAAGCATCAATTCTT-GTTTCAGTCTCTAGTCTTTCCAAAATT
*
1016455 TGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTAATGCTTTGGTGTCGC-AAGAAA
258 TGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTAATGCTTTGGTGTCGCAAAAAAA
* * * * *
1016519 AGGTTTT-TTTTCACCGTTTTTGACAGAATTAA-AGTTTCTCTCTTAATTAAGACAAACATGGAT
323 AGGTTTTCTTTCCACCGTTTTCGACAGAATCAACA-TTCCTCTCTTAATTAAGACAAACATGAAT
* *
1016582 AGTAATACGAATCCCTATTTTTTTCAGGATGAAGCACCATAAACATAGTCTTCTC-AGTAGGACA
387 AGTAATACGAATCCCCATTTTTTT-AGGATGAAGCACCAAAAACATAGTCTTCTCTA-TAGGACA
* * * *
1016646 GACGATATTGACGCTTTGGTAACACAAGAAAAGCTTTCTTCCCACCAATTTTTGCAAGGTGTAAG
450 AACGATATTGACGCTTTGGCAACACAAGAAAAGCTTTCTTCCC-CCAATTTTTGCAAAGTCTAAG
* * * * * * *
1016711 TTTGTG-CTTCAACTAAGACAAACATAGATTCTAACAATGTTCTTCATTTATTTTGTGATTA-AG
514 TTCGTGCCTT-AAATAAGACAAACATAGATTCCAACAATGATCTTCATTCATTTCGTGAGTAGA-
* * * * *
1016774 CACTATAAGCACAATCTCCTCATTAGGATAAATAATATTGGTGATTTTGTTTTGCGTAGAAACCT
577 CACTATAA-AACAATCTCCTCATTAGGATAAATAATATTGATGATTTTCTTTTCCATAGAAACCT
** * * *
1016839 TTTCTTTGGCCTATTTTCCTTACAATCAGAAATCATCCTTTAAATATAATAAGC-ACGATTCTCA
641 TTTCTTTGGCCTATTACCCTCAAAATCAAAAATCATCCTTTAAATATAATAAGCAACGATTCTCA
*
1016903 GAAGAGTCTCAAC-ACTTTTTGAGATTAGGAACGAAAAACACATTTCCTTCATTAGAAAACATGA
706 GAAGAGTCTC-ACTACTTTTTGAGATTAGGAACGAAAAACACATTCCCTTCATTAGAAAACATGA
* *
1016967 CATTGTTGTTTTGGTGT-ATGAAGAAAAGCTTTTCTTT-TCACCATTTTTGATAGAATCAAAGTT
770 CATTATTGTTTTGGTGTCA-CAAGAAAAGCTTTTCTTTCT-ACCATTTTTGATAGAATCAAAGTT
* * *
1017030 TGTCTCTTAAATAATACAAACTTGAATAGTCATACTAATCCCCATTCATTTCAGGATTAGGCACC
833 TGTCTCCTAAATAACACAAACTTAAATAGTCATACTAATCCCCATTCATTTCAGGATTAGGCACC
* * **
1017095 ATAAACATGGTCTTCTCATTAGGATACAAGGTATTGACGCATTGGTTTTGCAA
898 ATAAACATAGTCTTCTCATTAGGATACAAGGTATTAACGCATTGGTTTAACAA
* * * *
1017148 GAAAGGCTTTTTTCTCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGG
1 GAAAGGCTTTTTTCCCACTAACTTTTGTAATGTCTAAGTTCATGCCTCAAATGAGACAAACATGG
*
1017213 ATTCTAGTAAGGATCTT-ATTCATTTTGTGATTAGGCACTATAAACACTTTCTCCT-CATTAGGA
66 ATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCT-CTGCATTAGGA
* *
1017276 TAAATAAAATTGATG
130 TAAATGATATTGATG
1017291 CTTTGGTTCT
Statistics
Matches: 966, Mismatches: 112, Indels: 31
0.87 0.10 0.03
Matches are distributed among these distances:
947 1 0.00
948 67 0.07
949 141 0.15
950 654 0.68
951 103 0.11
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (950 bp):
GAAAGGCTTTTTTCCCACTAACTTTTGTAATGTCTAAGTTCATGCCTCAAATGAGACAAACATGG
ATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCTGCATTAGGAT
AAATGATATTGATGATTTTTGCTTGCATGGAAATTTCTTTTTGCCCTTATTTTACTCAAAATCAA
AATTCATCCCTTAAATATAACAAGCATCAATTCTTGTTTCAGTCTCTAGTCTTTCCAAAATTTGG
AACCAAGAACACATTCCCTTCATTAGGATACATGACATTAATGCTTTGGTGTCGCAAAAAAAAGG
TTTTCTTTCCACCGTTTTCGACAGAATCAACATTCCTCTCTTAATTAAGACAAACATGAATAGTA
ATACGAATCCCCATTTTTTTAGGATGAAGCACCAAAAACATAGTCTTCTCTATAGGACAAACGAT
ATTGACGCTTTGGCAACACAAGAAAAGCTTTCTTCCCCCAATTTTTGCAAAGTCTAAGTTCGTGC
CTTAAATAAGACAAACATAGATTCCAACAATGATCTTCATTCATTTCGTGAGTAGACACTATAAA
ACAATCTCCTCATTAGGATAAATAATATTGATGATTTTCTTTTCCATAGAAACCTTTTCTTTGGC
CTATTACCCTCAAAATCAAAAATCATCCTTTAAATATAATAAGCAACGATTCTCAGAAGAGTCTC
ACTACTTTTTGAGATTAGGAACGAAAAACACATTCCCTTCATTAGAAAACATGACATTATTGTTT
TGGTGTCACAAGAAAAGCTTTTCTTTCTACCATTTTTGATAGAATCAAAGTTTGTCTCCTAAATA
ACACAAACTTAAATAGTCATACTAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCT
TCTCATTAGGATACAAGGTATTAACGCATTGGTTTAACAA
Found at i:1017736 original size:634 final size:633
Alignment explanation
Indices: 1016670--1018559 Score: 2593
Period size: 634 Copynumber: 3.0 Consensus size: 633
1016660 TTTGGTAACA
* * * * * * * * *
1016670 CAAGAAAAGCTTTCTTCCCACCAATTTTTGCAAGGTGTAAGTTTGTGCTTCAACTAAGACAAACA
1 CAAGAAAGGTTTTCCTCCCA-CGATTTTTGTAAAGTGTAAGTTTGTGCATCAAATGAGACAAACA
** * * * * * *
1016735 TA-GATTCTAACAATGTTCTTCATTTATTTTGTGATTAAGCACTA-TAAGCACAATCTCCTCATT
65 -AGGATTCTAGTAATGATCTTCATTCATTTCGTAATTAAGCACTATTAA-CACATTCACCTCATT
* * * * * * *
1016798 AGGATAAATAATATTGGTGATTTTGTTTTGCGT-AGAAACCTTTTCTTTGGCCTATTTTCCTTAC
128 AGGATAAATGATATTGATGATTTTCTTTTGCATGA-AAATCTTTTCTTTGCCCTATTTTCCTTAA
* * * * *
1016862 AATCAGAAA-TCATCCTTTAAATATAATAAGCA-CGATTCTCAGAAGAGTCTCAACACTTTTTGA
192 AATCA-AAACTCATCCCTTAAATATGACAAGCATCGATTCTCAAAAGAGTCTCAACTCTTTTTGA
* * * * *
1016925 GATTAGGAACGAAAAACACATTTC-CTTCATTAGAAAACATGACATTGTTGTTTTGGTGT-ATGA
256 GATTAGGAACTAAGAACACA-TTCACCTCATTAGAATACATGACATTGTTGTTTTGGTGTCA-CA
* *
1016988 AGAAAAGCTTTTCTTTT-CACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAATACAAACT
319 AGAAAAGCTTTT-TTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAA-T
* *
1017052 TGAATAGTCATACTAATCCCCATTCATTTCAGGATTAGGCACCATAAACATGGTCTTCTCATTAG
382 CGAATAGTCATACTAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAG
* * * *
1017117 GATACAAGGTATTGACGCATTGGTTTTGCAAGAAAGGCTTTTTTCTCACCAATTTTTGTAAAGTC
447 GATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAACTTTTGTAAAGTC
1017182 TAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTT-ATTCATTTTGTGATTA
512 TAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTA
1017246 GGCACTATAAACACTTTCTCCTCATTAGGATAAATAAAATTGATGCTTTGGTTCTCG
577 GGCACTATAAACACTTTCTCCTCATTAGGATAAATAAAATTGATGCTTTGGTTCTCG
* * *
1017303 CAAGAAAGGTTTTCCTCCCATCGATTTTTGTAAAGTGTAAGTTTGTTCCTCAATTGAGACAAACA
1 CAAGAAAGGTTTTCCTCCCA-CGATTTTTGTAAAGTGTAAGTTTGTGCATCAAATGAGACAAACA
*
1017368 AGGATTCTAGTAATGATCTTCATTCATTTCGTAATTAAGCACTATTAACATATTCACCTCATTAG
65 AGGATTCTAGTAATGATCTTCATTCATTTCGTAATTAAGCACTATTAACACATTCACCTCATTAG
1017433 GATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
130 GATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
* * * * * * * *
1017498 CAAAACACATCCCTTAAAAATGACAAACATTGATTCTCATAAGGGTCTCCACTCTTTTCGAGATT
195 CAAAACTCATCCCTTAAATATGACAAGCATCGATTCTCAAAAGAGTCTCAACTCTTTTTGAGATT
* *
1017563 AGGAACTAAGAACACATTCACCCCATTAGAATACATGACATTGTTGTTTTGGTATCACAAGAAAA
260 AGGAACTAAGAACACATTCACCTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAAAA
*
1017628 GCTTTTTTTTCCACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAAGTCGAATAG
325 GCTTTTTTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAA-TCGAATAG
* *
1017693 TCATACTAATCCTCATTCATTTCAGGATTAGGCACCGTAAACATAGTCTTCTCATTAGGATACAA
389 TCATACTAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACAA
* * * * * *
1017758 GGTATTGATGCTTTAGTTTCACATGAAAGGCTTTTCTCCCACCAACTTTGGTAAAGTCTAAGTTC
454 GGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAACTTTTGTAAAGTCTAAGTTC
**
1017823 AAACCTCAAATGAGACAAACATGGATTCTAGTAAAAGGATCTTCATTCATTTTGTGATTAGGCAC
519 ATGCCTCAAATGAGACAAACATGGATTCTAGT--AAGGATCTTCATTCATTTTGTGATTAGGCAC
* *
1017888 TATAAACACTTTCTCCTCATTAGGATAAATAAAATTGATGCTTTGGTTTTTG
582 TATAAACACTTTCTCCTCATTAGGATAAATAAAATTGATGCTTTGGTTCTCG
**
1017940 CAAGAAAGGTTTTCCTCCCACTGATTTTTGTAAAGTGTAAGTTCATGCATCAAATGAGACAAA-A
1 CAAGAAAGGTTTTCCTCCCAC-GATTTTTGTAAAGTGTAAGTTTGTGCATCAAATGAGACAAACA
* * *
1018004 ATGGATTCTAGTAATGATCTTCATTCATTTCATAATCAGGCACTATTAACACATTCACCTCATTA
65 A-GGATTCTAGTAATGATCTTCATTCATTTCGTAATTAAGCACTATTAACACATTCACCTCATTA
* *
1018069 GGATAGATGATATTGAAGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAA
129 GGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAA
* * * *
1018134 TCAAAACTCATCCCTTAAATATGGCAAGCATCAATTCTCAAAAAAGTCTCTACTCTTTTTGAGAT
194 TCAAAACTCATCCCTTAAATATGACAAGCATCGATTCTCAAAAGAGTCTCAACTCTTTTTGAGAT
* * * * * *
1018199 TGGGAACTAAGAACACATTTACCTCATTAGAATACATGGCATTATTTTTTTGGTGTCATAAGAAA
259 TAGGAACTAAGAACACATTCACCTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAAA
* * * * *
1018264 AGCTTTTCTTTCCACAATTTTTTATAGAATCAAAGTTTGTCTC---AACAACAC-AATCCTAAAC
324 AGCTTTTTTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAAT-C-GAAT
* * *
1018325 AGTCATACTAATCCCCATTTATTTCAAGATTAAGCACCATAAACATAGTCTTCTCATTAGGATAC
387 AGTCATACTAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAC
* *
1018390 AAGGTATTGACGCTTTGGTTTCGCAAAAAAGGCATTTTTCCCACCAACTTTTGTAAAGTCTAAGT
452 AAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAACTTTTGTAAAGTCTAAGT
* *
1018455 TCATGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTTATTTTGTGATTAGACAC
517 TCATGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCAC
* * * * * *
1018520 TATAAACACCTTCTACGCATTTGGACAAATGAAATTGATG
582 TATAAACACTTTCTCCTCATTAGGATAAATAAAATTGATG
1018560 ATTTTTGTTT
Statistics
Matches: 1115, Mismatches: 127, Indels: 31
0.88 0.10 0.02
Matches are distributed among these distances:
632 68 0.06
633 189 0.17
634 445 0.40
635 1 0.00
636 12 0.01
637 400 0.36
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.35
Consensus pattern (633 bp):
CAAGAAAGGTTTTCCTCCCACGATTTTTGTAAAGTGTAAGTTTGTGCATCAAATGAGACAAACAA
GGATTCTAGTAATGATCTTCATTCATTTCGTAATTAAGCACTATTAACACATTCACCTCATTAGG
ATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
AAAACTCATCCCTTAAATATGACAAGCATCGATTCTCAAAAGAGTCTCAACTCTTTTTGAGATTA
GGAACTAAGAACACATTCACCTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAAAAG
CTTTTTTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAATCGAATAGTC
ATACTAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACAAGG
TATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAACTTTTGTAAAGTCTAAGTTCAT
GCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACTATA
AACACTTTCTCCTCATTAGGATAAATAAAATTGATGCTTTGGTTCTCG
Found at i:1018112 original size:159 final size:159
Alignment explanation
Indices: 1017072--1018112 Score: 620
Period size: 159 Copynumber: 6.6 Consensus size: 159
1017062 TACTAATCCC
* * *** ** * * *
1017072 CATTCATTTCAGGATTAGGCACCATAAACATGGTCTTCTCATTAGGATACAA-GGTATTGACGCA
1 CATTCATTTCATGATTAGGCACTATAAACACATTCACCTCATTAGGATA-AATGATATTGATGCT
* * * * * **
1017136 TTGGTTTTGCAAGAAAGGCTTTT-TTCTCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAT
65 TTTGTTTCGCAAGAAAAGCTTTTCCTCCCACTGATTTTTGTAAAGTCTAAGTTCATGCCTCAAAT
*
1017200 GAGACAAACATGGATTCTAGTAAGGATCTT
130 GAGACAAAAATGGATTCTAGTAAGGATCTT
** * * * *
1017230 -ATTCATTTTGTGATTAGGCACTATAAACACTTTCTCCTCATTAGGATAAATAAAATTGATGCTT
1 CATTCATTTCATGATTAGGCACTATAAACACATTCACCTCATTAGGATAAATGATATTGATGCTT
* * * ** * *
1017294 TGGTTCTCGCAAG-AAAGGTTTTCCTCCCA-TCGATTTTTGTAAAGTGTAAGTTTGTTCCTCAAT
66 TTGTT-TCGCAAGAAAAGCTTTTCCTCCCACT-GATTTTTGTAAAGTCTAAGTTCATGCCTCAAA
*
1017357 TGAGACAAACAA-GGATTCTAGTAATGATCTT
129 TGAGACAAA-AATGGATTCTAGTAAGGATCTT
* * * * * *
1017388 CATTCATTTCGTAATTAAGCACTATTAACATATTCACCTCATTAGGATAAATGATATTGATGATT
1 CATTCATTTCATGATTAGGCACTATAAACACATTCACCTCATTAGGATAAATGATATTGATGCTT
* * * * * * * * *** * *
1017453 TTCTTTTGCATGAAAATCTTTTCTTTGCC-CT-ATTTTCCT-TAAAATCAAAACACATCCCTTAA
66 TTGTTTCGCAAGAAAAGCTTTTC-CTCCCACTGATTTT--TGTAAAGTCTAAGTTCATGCCTCAA
* * * * *
1017515 A-AATGACAAACATTGATTCTCA-TAAGGGTCTC
128 ATGA-GACAAAAATGGATTCT-AGTAAGGATCTT
* * * * * * * *
1017547 CACTCTTTTCGA-GATTAGGAACTA-AGAACACATTCACCCCATTAGAATACATGACATTGTTG-
1 CATTCATTTC-ATGATTAGGCACTATA-AACACATTCACCTCATTAGGATAAATGATATTGATGC
* * ** * * * * *
1017609 TTTTGGTATCACAAGAAAAGCTTTTTTTTCCACCGTTTTTTATAGAA-TCAAAGTT--TGTCTCT
64 TTTT-GTTTCGCAAGAAAAGCTTTTCCTCCCACTGATTTTTGTA-AAGTCTAAGTTCATG-C-CT
* * * * *
1017671 TAAAT-A-ACACAAAGTCGAATAGTCATACT-A--ATCCT
125 CAAATGAGACA-AAAAT-GGAT--TC-TAGTAAGGATCTT
* ** * * ** *
1017706 CATTCATTTCAGGATTAGGCACCGTAAACATAGTCTTCTCATTAGGATACAA-GGTATTGATGCT
1 CATTCATTTCATGATTAGGCACTATAAACACATTCACCTCATTAGGATA-AATGATATTGATGCT
* * * * ** * * **
1017770 TTAGTTTCACATGAAAGGCTTTT-CTCCCACCAACTTTGGTAAAGTCTAAGTTCAAACCTCAAAT
65 TTTGTTTCGCAAGAAAAGCTTTTCCTCCCACTGATTTTTGTAAAGTCTAAGTTCATGCCTCAAAT
*
1017834 GAGACAAACATGGATTCTAGTAAAAGGATCTT
130 GAGACAAAAATGGATTCTAGT--AAGGATCTT
** * * * *
1017866 CATTCATTTTGTGATTAGGCACTATAAACACTTTCTCCTCATTAGGATAAATAAAATTGATGCTT
1 CATTCATTTCATGATTAGGCACTATAAACACATTCACCTCATTAGGATAAATGATATTGATGCTT
* * * * *
1017931 TGGTTTTTGCAAG-AAAGGTTTTCCTCCCACTGATTTTTGTAAAGTGTAAGTTCATGCATCAAAT
66 TTG-TTTCGCAAGAAAAGCTTTTCCTCCCACTGATTTTTGTAAAGTCTAAGTTCATGCCTCAAAT
*
1017995 GAGACAAAAATGGATTCTAGTAATGATCTT
130 GAGACAAAAATGGATTCTAGTAAGGATCTT
* * * * * *
1018025 CATTCATTTCATAATCAGGCACTATTAACACATTCACCTCATTAGGATAGATGATATTGAAGATT
1 CATTCATTTCATGATTAGGCACTATAAACACATTCACCTCATTAGGATAAATGATATTGATGCTT
* * * *
1018090 TTCTTTTGCATGAAAATCTTTTC
66 TTGTTTCGCAAGAAAAGCTTTTC
1018113 TTTGCCCTAT
Statistics
Matches: 659, Mismatches: 176, Indels: 95
0.71 0.19 0.10
Matches are distributed among these distances:
155 3 0.00
156 4 0.01
157 66 0.10
158 125 0.19
159 313 0.47
160 83 0.13
161 63 0.10
162 2 0.00
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.36
Consensus pattern (159 bp):
CATTCATTTCATGATTAGGCACTATAAACACATTCACCTCATTAGGATAAATGATATTGATGCTT
TTGTTTCGCAAGAAAAGCTTTTCCTCCCACTGATTTTTGTAAAGTCTAAGTTCATGCCTCAAATG
AGACAAAAATGGATTCTAGTAAGGATCTT
Found at i:1020156 original size:158 final size:158
Alignment explanation
Indices: 1019994--1020370 Score: 402
Period size: 159 Copynumber: 2.4 Consensus size: 158
1019984 TACTAATCCC
* * ***
1019994 CATTCATTTCAAGATTAGGCACCATAAACATAGTCTTCTCACTAGGATACAA-GGTATTGACGCA
1 CATTCATTTCAA-ATTAGGCACTATAAACATAGTCTCCTCACTAGGATA-AATAAAATTGACGCA
* * *
1020058 TTGGTT-TCGCAAGAAAGGCTTTT-TTCTCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAA
64 TTGGTTCTCGCAAGAAAGG-TTTTCCTCCCACCAATTTTTGCAAAGTCTAAGTTCATGCCTCAAA
1020121 TGAGACAAACATGGATTCTAGTAAGGATCTT
128 TGAGACAAACATGGATTCTAGTAAGGATCTT
*** * * * *
1020152 CATTCATTTTGTTATTAGGCACTATAAACACT-TTCTCCTCATTAGGATAAATAAAATTGATGCT
1 CATTCA-TTTCAAATTAGGCACTATAAACA-TAGTCTCCTCACTAGGATAAATAAAATTGACGCA
* * * * **
1020216 TTGGTTCTCGCAAGAAAGGTTTTCCTCCCATCGATTTTTGCAAGGTGTAAGTTTGTGCCTCAAAT
64 TTGGTTCTCGCAAGAAAGGTTTTCCTCCCACCAATTTTTGCAAAGTCTAAGTTCATGCCTCAAAT
*
1020281 GAGACAAACATGGATTCTAGTAATGATCTT
129 GAGACAAACATGGATTCTAGTAAGGATCTT
* * * * * * * *
1020311 TATTCATTTCGTAATTAGGCACTATTAACATATTCACCTCATTAGGATAAACAATATTGA
1 CATTCATTTC-AAATTAGGCACTATAAACATAGTCTCCTCACTAGGATAAATAAAATTGA
1020371 TGATTTTCTT
Statistics
Matches: 183, Mismatches: 29, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
157 2 0.01
158 57 0.31
159 124 0.68
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (158 bp):
CATTCATTTCAAATTAGGCACTATAAACATAGTCTCCTCACTAGGATAAATAAAATTGACGCATT
GGTTCTCGCAAGAAAGGTTTTCCTCCCACCAATTTTTGCAAAGTCTAAGTTCATGCCTCAAATGA
GACAAACATGGATTCTAGTAAGGATCTT
Found at i:1020288 original size:159 final size:158
Alignment explanation
Indices: 1020049--1020372 Score: 436
Period size: 159 Copynumber: 2.0 Consensus size: 158
1020039 GATACAAGGT
* * * *
1020049 ATTGACGCATTGGTTTCGCAAGAAAGGCTTTTTTCTCACCAATTTTTGTAAAGTCTAAGTTCATG
1 ATTGATGCATTGGTTTCGCAAGAAAGGCTTTTCTCCCACCAATTTTTGCAAAGTCTAAGTTCATG
* *
1020114 CCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTTGTTATTAGGCACTATAA
66 CCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCGTAATTAGGCACTATAA
* *
1020179 ACACT-TTCTCCTCATTAGGATAAATAAA
131 ACA-TATTCACCTCATTAGGATAAACAAA
* * * * * **
1020207 ATTGATGCTTTGGTTCTCGCAAGAAAGG-TTTTCCTCCCATCGATTTTTGCAAGGTGTAAGTTTG
1 ATTGATGCATTGGTT-TCGCAAGAAAGGCTTTT-CTCCCACCAATTTTTGCAAAGTCTAAGTTCA
* *
1020271 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTCGTAATTAGGCACTAT
64 TGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCGTAATTAGGCACTAT
* *
1020336 TAACATATTCACCTCATTAGGATAAACAAT
129 AAACATATTCACCTCATTAGGATAAACAAA
1020366 ATTGATG
1 ATTGATG
1020373 ATTTTCTTTT
Statistics
Matches: 144, Mismatches: 19, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
158 18 0.12
159 126 0.88
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.36
Consensus pattern (158 bp):
ATTGATGCATTGGTTTCGCAAGAAAGGCTTTTCTCCCACCAATTTTTGCAAAGTCTAAGTTCATG
CCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCGTAATTAGGCACTATAA
ACATATTCACCTCATTAGGATAAACAAA
Found at i:1021471 original size:13 final size:13
Alignment explanation
Indices: 1021453--1021478 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1021443 CAATTTTTTG
1021453 TGTATCGATACAT
1 TGTATCGATACAT
1021466 TGTATCGATACAT
1 TGTATCGATACAT
1021479 ACTTTGGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1022198 original size:39 final size:39
Alignment explanation
Indices: 1022123--1022213 Score: 105
Period size: 39 Copynumber: 2.3 Consensus size: 39
1022113 TTTTCTTTCT
1022123 CCCTTAATTAAAGTAATTTTAACAAATTCGTACATTCTCC
1 CCCTTAATTAAAGTAATTTTAACAAATTCG-ACATTCTCC
* *
1022163 CCCTTAA-TAAGGTAATTTTAGCAAATTTACG-CATTCTCC
1 CCCTTAATTAAAGTAATTTTAACAAA-TT-CGACATTCTCC
* *
1022202 CCTTTTATTAAA
1 CCCTTAATTAAA
1022214 AAATCTCCCC
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
39 29 0.67
40 12 0.28
41 2 0.05
ACGTcount: A:0.33, C:0.22, G:0.07, T:0.38
Consensus pattern (39 bp):
CCCTTAATTAAAGTAATTTTAACAAATTCGACATTCTCC
Found at i:1027923 original size:475 final size:472
Alignment explanation
Indices: 1026956--1028115 Score: 1457
Period size: 475 Copynumber: 2.4 Consensus size: 472
1026946 AAAAAGAATG
* *
1026956 CAGGATTAGGCACCATAAGCATAGTTTTCTCATTAGGATACAAGGTATTGATGCTTTGGTTTCGC
1 CAGGATTAGGCACCATAAACATAGTCTTCTCA-TAGGATACAA-GTATTGATGCTTTGGTTTCGC
* * * * * * *
1027021 AAGAAAGGTTTTTTCCCCCTAACTTTTGTAAAGTCTAACTTCATTCCTTAAATGAGACAAACATG
64 AAAAAAGCTTTTTTCCCCCCAACTTTTGTAAAGTCTAAGTTCATACCTCAAATGAGACAAACATA
* * **
1027086 GACTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCCGCATTAGGA
129 GATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACACTTTCTCTTCATTAGGA
* ** *
1027151 TAAATGATATTGATGATTTTTGTTTGCATGGAAATCTTTTCTTTGCCATATTTTACTTAAAATCA
194 TAAATAATATTGATGATTTTTGTTTGCAAAGAAACCTTTTCTTTGCCATATTTTACTTAAAATCA
* * * *** * * *
1027216 AATTCATCCGTTAAATATGACAAGCATCGATTCTCGTTTTAGAGTCTATTCTTTTCAAGATTTGG
259 AAATCATCCGTTAAATATGACAAGCACCGATTCTCATAAGAGACTCCATTCTTTTCAAGATTAGG
* * *
1027281 AACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAAAAAAGGT
324 AACCAAGAACACATTCCCTTCATTAGAATACATGACATTGATGCTTTGGTGTCACAAAAAAAGCT
* * * * * *
1027346 TTTCTTTCCACTGTTTTCGACAGAATTAAAGTTTCTCTCTTAATTAAGACAAACATGGATACTCA
389 TTTCTTTCCACCGTTTTCGACAGAATCAAAGTTTATCTCTTAAATAACACAAACATGAATACTCA
* **
1027411 TACAAATCCCCATTTTTTT
454 CACAAATCCCCATTCATTT
* * * *
1027430 CAGGATTAGGCACCATAAACATAGTCTTCTCAGTAGGACAGACAA-TATTAACGCTTTGGTATCG
1 CAGGATTAGGCACCATAAACATAGTCTTCTCA-TAGG--ATACAAGTATTGATGCTTTGGTTTCG
* * * * * *
1027494 CAAAACAAGCTTTGTTCCCCCCAAATTTTGTAAACTGTAAGTTCGTGCCTCAAATGAGACAAACA
63 CAAAA-AAGCTTTTTTCCCCCCAACTTTTGTAAAGTCTAAGTTCATACCTCAAATGAGACAAACA
* * ** *
1027559 TAGATTCTAGTAATGG-TCTTCATTCATTTTTTGATTAGGCATTATAAACACAATCTCTTTATTA
127 TAGATTCTAGTAA-GGATCTTCATTCATTTTGTGATTAGGCACTATAAACACTTTCTCTTCATTA
* * *
1027623 GGATAGATAATATTGATGATTTTAT-TTTGCAAAGAAACCTTTTCTTTGGTC-TATTTTCCTTAA
191 GGATAAATAATATTGATGATTTT-TGTTTGCAAAGAAACCTTTTCTTT-GCCATATTTTACTTAA
** **
1027686 AATCAAAAATCATCTTTTAAATATGACAAGCACCGATTCTCATAAGAGACTCCATTCTTTTTGAG
254 AATC-AAAATCATCCGTTAAATATGACAAGCACCGATTCTCATAAGAGACTCCATTCTTTTCAAG
* * * * * *
1027751 ATTAGGAACTAAGTACACATTCCGTTCATTATAATACATGACATTGATG-TTTTGTGTCACAAGA
318 ATTAGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTGATGCTTTGGTGTCACAAAA
* * * * *
1027815 AAAGCTTTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTATTTCTTAAATAACACAAACTTGAA
383 AAAGCTTTTCTTTCCACCGTTTTCGACAGAATCAAAGTTTATCTCTTAAATAACACAAACATGAA
* *
1027880 TAGTCACACTAATCCCCATTCATTT
448 TACTCACACAAATCCCCATTCATTT
*
1027905 CAGGATTAGGCACCATAAACATAGTCTTCTCATCAGGATACAAGGTATTGATGCTTTAGTTTCGC
1 CAGGATTAGGCACCATAAACATAGTCTTCTCAT-AGGATACAA-GTATTGATGCTTTGGTTTCGC
* *
1027970 AAAAAAGGCTTTTTTCCCACCAACTTTTGTAAAGTCTAAGTTCATACATCAAATGAGACAAACAT
64 AAAAAA-GCTTTTTTCCCCCCAACTTTTGTAAAGTCTAAGTTCATACCTCAAATGAGACAAACAT
* *
1028035 TGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACAATAAACACTTTCTCTTCATTAGG
128 AGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACACTTTCTCTTCATTAGG
*
1028100 ATAAATAAAATTGATG
193 ATAAATAATATTGATG
1028116 CTTTGGCTTT
Statistics
Matches: 579, Mismatches: 95, Indels: 23
0.83 0.14 0.03
Matches are distributed among these distances:
473 5 0.01
474 59 0.10
475 414 0.72
476 101 0.17
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (472 bp):
CAGGATTAGGCACCATAAACATAGTCTTCTCATAGGATACAAGTATTGATGCTTTGGTTTCGCAA
AAAAGCTTTTTTCCCCCCAACTTTTGTAAAGTCTAAGTTCATACCTCAAATGAGACAAACATAGA
TTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACACTTTCTCTTCATTAGGATA
AATAATATTGATGATTTTTGTTTGCAAAGAAACCTTTTCTTTGCCATATTTTACTTAAAATCAAA
ATCATCCGTTAAATATGACAAGCACCGATTCTCATAAGAGACTCCATTCTTTTCAAGATTAGGAA
CCAAGAACACATTCCCTTCATTAGAATACATGACATTGATGCTTTGGTGTCACAAAAAAAGCTTT
TCTTTCCACCGTTTTCGACAGAATCAAAGTTTATCTCTTAAATAACACAAACATGAATACTCACA
CAAATCCCCATTCATTT
Found at i:1028058 original size:158 final size:159
Alignment explanation
Indices: 1027896--1028274 Score: 401
Period size: 159 Copynumber: 2.4 Consensus size: 159
1027886 CACTAATCCC
* ***
1027896 CATTCATTTCAG-GATTAGGCACCATAAACA-TAGTCT-TCTCATCAGGATACAA-GGTATTGAT
1 CATTCATTT-AGTGATTAGGCACAATAAACACT-GTCTCT-TCATCAGGATA-AATAAAATTGAT
*
1027957 GCTTTAG-TTTCGCAAAAAAGGCTTTTTTCCCACCAACTTTTGTAAAGTCTAAGTTCATACATCA
62 GCTTTAGCTTTCGCAAAAAAGGCTTTCTTCCCACCAACTTTTGTAAAGTCTAAGTTCATACATCA
*
1028021 AATGAGACAAACATTGATTCTAGTAAGGATCTT
127 AATGAGACAAACATGGATTCTAGTAAGGATCTT
* * *
1028054 CATTCATTTTGTGATTAGGCACAATAAACACTTTCTCTTCATTAGGATAAATAAAATTGATGCTT
1 CATTCATTTAGTGATTAGGCACAATAAACACTGTCTCTTCATCAGGATAAATAAAATTGATGCTT
* * * * * * * * *
1028119 TGGCTTTTGCAAGAAAGGCTTTCTTCCCACCGATTTTTGTAAAGTGTAAGTTCGTGCCTCAAATG
66 TAGCTTTCGCAAAAAAGGCTTTCTTCCCACCAACTTTTGTAAAGTCTAAGTTCATACATCAAATG
* *
1028184 AGACCAACATGGATTCTAGTAATGATCTT
131 AGACAAACATGGATTCTAGTAAGGATCTT
* ** * * * * * * *
1028213 CATTCTTTTTCTAATTAGGCACAATTAACACAT-TCACCTCATTAGGATAAATGATATTGATG
1 CATTCATTTAGTGATTAGGCACAATAAACAC-TGTCTCTTCATCAGGATAAATAAAATTGATG
1028275 ATTTTCTTTT
Statistics
Matches: 187, Mismatches: 28, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
157 3 0.02
158 51 0.27
159 132 0.71
160 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (159 bp):
CATTCATTTAGTGATTAGGCACAATAAACACTGTCTCTTCATCAGGATAAATAAAATTGATGCTT
TAGCTTTCGCAAAAAAGGCTTTCTTCCCACCAACTTTTGTAAAGTCTAAGTTCATACATCAAATG
AGACAAACATGGATTCTAGTAAGGATCTT
Found at i:1028193 original size:159 final size:158
Alignment explanation
Indices: 1027951--1028292 Score: 443
Period size: 159 Copynumber: 2.2 Consensus size: 158
1027941 GATACAAGGT
* * *
1027951 ATTGATGCTTTAG-TTTCGCAAAAAAGGCTTTTTTCCCACCAACTTTTGTAAAGTCTAAGTTCAT
1 ATTGATGCTTT-GCTTTTGCAAGAAAGGCTTTCTTCCCACCAACTTTTGTAAAGTCTAAGTTCAT
* * *
1028015 ACATCAAATGAGACAAACATTGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACAATA
65 ACATCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTTCTAATTAGGCACAATA
* * *
1028080 AACACTTTCTCTTCATTAGGATAAATAAA
130 AACACATTCACCTCATTAGGATAAATAAA
* * * *
1028109 ATTGATGCTTTGGCTTTTGCAAGAAAGGCTTTCTTCCCACCGATTTTTGTAAAGTGTAAGTTCGT
1 ATTGATGCTTT-GCTTTTGCAAGAAAGGCTTTCTTCCCACCAACTTTTGTAAAGTCTAAGTTCAT
* * * * * *
1028174 GCCTCAAATGAGACCAACATGGATTCTAGTAATGATCTTCATTCTTTTTCTAATTAGGCACAATT
65 ACATCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTTCTAATTAGGCACAATA
* *
1028239 AACACATTCACCTCATTAGGATAAATGAT
130 AACACATTCACCTCATTAGGATAAATAAA
* * *
1028268 ATTGATGATTTTCTTTTGCATGAAA
1 ATTGATGCTTTGCTTTTGCAAGAAA
1028293 ATCTTTTCTT
Statistics
Matches: 158, Mismatches: 25, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
158 24 0.15
159 134 0.85
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37
Consensus pattern (158 bp):
ATTGATGCTTTGCTTTTGCAAGAAAGGCTTTCTTCCCACCAACTTTTGTAAAGTCTAAGTTCATA
CATCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTTCTAATTAGGCACAATAA
ACACATTCACCTCATTAGGATAAATAAA
Found at i:1028246 original size:475 final size:469
Alignment explanation
Indices: 1026956--1028274 Score: 1339
Period size: 475 Copynumber: 2.8 Consensus size: 469
1026946 AAAAAGAATG
* *
1026956 CAGGATTAGGCACCATAAGCATAGTTTTCTCATTAGGATACAAGGTATTGATGCTTTGGTTTCGC
1 CAGGATTAGGCACCATAAACATAGTCTTCTCA-TAGGATACAAGGTATTGATGCTTTGGTTTCGC
* * * *
1027021 AAGAAAGG-TTTTTTCCCCCTAACTTTTGTAAAGTCTAACTTCATTCCTTAAATGAGACAAACAT
65 AAAAAAGGCTTTTTTCCCCC-AACTTTTGTAAAGTCTAAGTTCATACCTCAAATGAGACAAACAT
* * * **
1027085 GGACTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCCGCATTAGG
129 AGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACACTTTCTCTTCATTAGG
* * * *
1027150 ATAAATGATATTGATGATTTTTGTTTGCATGGAAATCTTTTCTTTGCCA-TATTTTACTTAAAAT
194 ATAAATAATATTGATGATTTAT-TTTGCA-AGAAACCTTTTC-TT-CCACTATTTT-CTTAAAAT
* * **
1027214 CAAATTCATCCGTTAAATATGACAAGCATCGATTCTCGTTTTAGAGTC-T-ATTC-TTTTCAAGA
254 AAAATTCATCC-TTAAATATGACAAGCATCGATTCTAGTAAT-GAGTCTTCATTCTTTTTCAAGA
* * * *
1027276 TTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAAAA
317 TTAGGAA-CAATAACACATTCCCTTCATTAGAATACATGACATTGATGCTTTGGTGTCACAAAAA
* * * * * * *
1027341 AAGGTTTTCTTTCCACTGTTTTCGACAGAATTAAAGTTTCTCTCTTAATTAAGACAAACATGGAT
381 AAGCTTTTCTTTCCACCGTTTTCGACAGAATCAAAGTTTATCTCTTAAATAACACAAACATGAAT
* **
1027406 ACTCATACAAATCCCCATTTTTTT
446 ACTCACACAAATCCCCATTCATTT
* * * *
1027430 CAGGATTAGGCACCATAAACATAGTCTTCTCAGTAGGACAGACAA--TATTAACGCTTTGGTATC
1 CAGGATTAGGCACCATAAACATAGTCTTCTCA-TAGG--ATACAAGGTATTGATGCTTTGGTTTC
* * * * * *
1027493 GCAAAACAA-GCTTTGTTCCCCCCAAATTTTGTAAACTGTAAGTTCGTGCCTCAAATGAGACAAA
63 GCAAAA-AAGGCTTT-TTTCCCCCAACTTTTGTAAAGTCTAAGTTCATACCTCAAATGAGACAAA
* * ** *
1027557 CATAGATTCTAGTAATGG-TCTTCATTCATTTTTTGATTAGGCATTATAAACACAATCTCTTTAT
126 CATAGATTCTAGTAA-GGATCTTCATTCATTTTGTGATTAGGCACTATAAACACTTTCTCTTCAT
* ***
1027621 TAGGATAGATAATATTGATGATTTTATTTTGCAAAGAAACCTTTTCTTTGGTCTATTTTCCTTAA
190 TAGGATAAATAATATTGATGA-TTTATTTTGC-AAGAAACCTTTTC-TTCCACTATTTT-CTTAA
* * * * *
1027686 AATCAAAAATCATCTTTTAAATATGACAAGCACCGATTCTCA-TAA-GAGACTCCATTCTTTTT-
251 AAT-AAAATTCATC-CTTAAATATGACAAGCATCGATTCT-AGTAATGAGTCTTCATTCTTTTTC
* * * *
1027748 GAGATTAGGAACTAAGT-ACACATTCCGTTCATTATAATACATGACATTGATG-TTTTGTGTCAC
313 AAGATTAGGAAC-AA-TAACACATTCCCTTCATTAGAATACATGACATTGATGCTTTGGTGTCAC
* * * * * *
1027811 AAGAAAAGCTTTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTATTTCTTAAATAACACAAACT
376 AAAAAAAGCTTTTCTTTCCACCGTTTTCGACAGAATCAAAGTTTATCTCTTAAATAACACAAACA
* *
1027876 TGAATAGTCACACTAATCCCCATTCATTT
441 TGAATACTCACACAAATCCCCATTCATTT
*
1027905 CAGGATTAGGCACCATAAACATAGTCTTCTCATCAGGATACAAGGTATTGATGCTTTAGTTTCGC
1 CAGGATTAGGCACCATAAACATAGTCTTCTCAT-AGGATACAAGGTATTGATGCTTTGGTTTCGC
*
1027970 AAAAAAGGCTTTTTTCCCACCAACTTTTGTAAAGTCTAAGTTCATACATCAAATGAGACAAACAT
65 AAAAAAGGCTTTTTTCCC-CCAACTTTTGTAAAGTCTAAGTTCATACCTCAAATGAGACAAACAT
* *
1028035 TGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACAATAAACACTTTCTCTTCATTAGG
129 AGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACACTTTCTCTTCATTAGG
* * * * * *
1028100 ATAAATAAAATTGATGCTTTGGCTTTTGCAAGAAAGGC-TTTCTTCCCACCGATTTT-TGTAAAG
194 ATAAATAATATTGATGATTT--ATTTTGCAAGAAA-CCTTTTCTT-CCA-CTATTTTCT-TAAAA
* * * * * *
1028163 TGTAAGTTCGTGCCTCAAATGA-GACCAA-CATGGATTCTAGTAATGA-TCTTCATTCTTTTTCT
253 T-AAAATTCAT-CCTTAAAT-ATGA-CAAGCATCGATTCTAGTAATGAGTCTTCATTCTTTTTCA
* * * *
1028225 A-ATTAGGCACAATTAACACATTCACC-TCATTAGGATAAATGATATTGATG
314 AGATTAGGAACAA-TAACACATTC-CCTTCATTAGAATACATGACATTGATG
1028275 ATTTTCTTTT
Statistics
Matches: 690, Mismatches: 118, Indels: 73
0.78 0.13 0.08
Matches are distributed among these distances:
473 5 0.01
474 79 0.11
475 482 0.70
476 120 0.17
477 4 0.01
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (469 bp):
CAGGATTAGGCACCATAAACATAGTCTTCTCATAGGATACAAGGTATTGATGCTTTGGTTTCGCA
AAAAAGGCTTTTTTCCCCCAACTTTTGTAAAGTCTAAGTTCATACCTCAAATGAGACAAACATAG
ATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACACTTTCTCTTCATTAGGAT
AAATAATATTGATGATTTATTTTGCAAGAAACCTTTTCTTCCACTATTTTCTTAAAATAAAATTC
ATCCTTAAATATGACAAGCATCGATTCTAGTAATGAGTCTTCATTCTTTTTCAAGATTAGGAACA
ATAACACATTCCCTTCATTAGAATACATGACATTGATGCTTTGGTGTCACAAAAAAAGCTTTTCT
TTCCACCGTTTTCGACAGAATCAAAGTTTATCTCTTAAATAACACAAACATGAATACTCACACAA
ATCCCCATTCATTT
Found at i:1028388 original size:634 final size:632
Alignment explanation
Indices: 1027519--1028731 Score: 1666
Period size: 634 Copynumber: 1.9 Consensus size: 632
1027509 TCCCCCCAAA
*
1027519 TTTTGTAAACTGTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATGGTCTTCATTC
1 TTTTGTAAACTGTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTC
* ** * * * *
1027584 ATTTTTTGATTAGGCATTATAAACACAATCTCTTTATTAGGATAGATAATATTGATGATTTTATT
66 ATTTTTTAATTAGGCACAATAAACACAATCACCTCATTAGGATAAATAATATTGATGATTTTATT
** * ** *
1027649 TTGCAAAGAAACCTTTTCTTTGGTCTATTTTCCTTAAAATCAAAAATCATCTTTTAAATATGACA
131 TTGCAAAGAAACCTTTTCTTTGCCCTATTATCCTTAAAATCAAAAATCATCCCTTAAAAATGACA
* * * * * *
1027714 AGCACCGATTCTCATAAGAGACTCCATTCTTTTTGAGATTAGGAACTAAGTACACATTC-CGTTC
196 AGCACCGATTCTCAGAAGAGACTCCACTATTTTCGAGATTAGGAACTAAGAACACATTCAC-CTC
* * * *
1027778 ATTATAATACATGACATTGATG-TTTTGTGTCACAAGAAAAGCTTTTCTTTTCACCGTTTTTGAT
260 ATTACAATACATAACATTGATGCTTTAGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGAT
* * ** * *
1027842 AGAATCAAAGTTTATTTCTTAAATAACACAAACTTGAATAGTCACACTAATCCCCATTCATTTCA
325 AGAATCAAAATCTACCTCTTAAAT---ACAAACATAAATAGTCACACTAATCCCCATTCATTTCA
* *
1027907 GGATT-AGGCACCATAAACATAGTCTTCTCATCAGGATACAAGGTATTGATGCTTTAGTTTCGCA
387 GGATTCA-GCACCATAAACATAGTCTTCTCATAAGGATACAAGATATTGATGCTTTAGTTTCGCA
* * * *
1027971 AAAAAGGCTTTTTTCCCACCAACTTTTGTAAAGTCTAAGTTCAT-ACATCAAATGAGACAAACAT
451 AAAAAGGCTTTTTTCCCACAAACTTTTGTAAAGCCTAACTCCATGAC-TCAAATGAGACAAACAT
* * * * * *
1028035 TGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACAATAAACACTTTCTCTTCATTAGG
515 GGAATCTAGTAAGGATCTTCATTCATTTTGTAATTAGGCACAATAAACACATTCACCTCATTAGG
1028100 ATAAATAAAATTGATGCTTTGGCTTTTGCAAGAAAGGCTTTCTTCCCACCGAT
580 ATAAATAAAATTGATGCTTTGGCTTTTGCAAGAAAGGCTTTCTTCCCACCGAT
* * *
1028153 TTTTGTAAAGTGTAAGTTCGTGCCTCAAATGAGACCAACATGGATTCTAGTAATGATCTTCATTC
1 TTTTGTAAACTGTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTC
* * * *
1028218 -TTTTTCTAATTAGGCACAATTAACACATTCACCTCATTAGGATAAATGATATTGATGATTTTCT
66 ATTTTT-TAATTAGGCACAATAAACACAATCACCTCATTAGGATAAATAATATTGATGATTTTAT
* * **
1028282 TTTGC-ATGAAAATCTTTTCTTTGCCCTATTATGTTTAAAATCAAAACA-CATCCCTTAAAAATG
130 TTTGCAAAG-AAACCTTTTCTTTGCCCTATTATCCTTAAAATCAAAA-ATCATCCCTTAAAAATG
* *
1028345 ACAAGCATCGATTCTCAGAAGAGTCTCCACTATTTTCGAGATTAGGAACTAAGAACACATTCACC
193 ACAAGCACCGATTCTCAGAAGAGACTCCACTATTTTCGAGATTAGGAACTAAGAACACATTCACC
* **
1028410 TCATTACGATACATAACATTGATGCTTTAGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTTG
258 TCATTACAATACATAACATTGATGCTTTAGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTG
* * * *
1028475 ATAGAATCAAAATCTGCCTCTTAAATACAAACATAAATAGTCATACTAATCGCCATTCTTTTCAG
323 ATAGAATCAAAATCTACCTCTTAAATACAAACATAAATAGTCACACTAATCCCCATTCATTTCAG
* * * *
1028540 GATTCAGCACCATAAATATAGTCTTTTCATAAGGATACATGATATTGATGCTTTAGTTTCGCAAG
388 GATTCAGCACCATAAACATAGTCTTCTCATAAGGATACAAGATATTGATGCTTTAGTTTCGCAAA
* *
1028605 AAAGGCTTTTTTCCCACAAATTTTTGTAAAGCCTAACTCCATGTCTCAAATGAGACAAACATGGA
453 AAAGGCTTTTTTCCCACAAACTTTTGTAAAGCCTAACTCCATGACTCAAATGAGACAAACATGGA
* *
1028670 ATCTAGTAAGGATCTTCATTCATTTTGTAATTAGGCACTATTAACACATTCACCTCATTAGG
518 ATCTAGTAAGGATCTTCATTCATTTTGTAATTAGGCACAATAAACACATTCACCTCATTAGG
1028732 GTTAATGATA
Statistics
Matches: 502, Mismatches: 70, Indels: 16
0.85 0.12 0.03
Matches are distributed among these distances:
632 202 0.40
633 9 0.02
634 232 0.46
635 59 0.12
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (632 bp):
TTTTGTAAACTGTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTC
ATTTTTTAATTAGGCACAATAAACACAATCACCTCATTAGGATAAATAATATTGATGATTTTATT
TTGCAAAGAAACCTTTTCTTTGCCCTATTATCCTTAAAATCAAAAATCATCCCTTAAAAATGACA
AGCACCGATTCTCAGAAGAGACTCCACTATTTTCGAGATTAGGAACTAAGAACACATTCACCTCA
TTACAATACATAACATTGATGCTTTAGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATA
GAATCAAAATCTACCTCTTAAATACAAACATAAATAGTCACACTAATCCCCATTCATTTCAGGAT
TCAGCACCATAAACATAGTCTTCTCATAAGGATACAAGATATTGATGCTTTAGTTTCGCAAAAAA
GGCTTTTTTCCCACAAACTTTTGTAAAGCCTAACTCCATGACTCAAATGAGACAAACATGGAATC
TAGTAAGGATCTTCATTCATTTTGTAATTAGGCACAATAAACACATTCACCTCATTAGGATAAAT
AAAATTGATGCTTTGGCTTTTGCAAGAAAGGCTTTCTTCCCACCGAT
Found at i:1029657 original size:158 final size:159
Alignment explanation
Indices: 1029495--1029826 Score: 458
Period size: 159 Copynumber: 2.1 Consensus size: 159
1029485 ACATAGTCTT
** * * * *
1029495 CTCATTAGGATACAA-GGTATTGATGCTTTGGTT-CCGGAGGAAAGGCTTTTTTCCCACCAACTT
1 CTCATTAGGATA-AATGAAATTAATGCTTTGGTTACCGCAAGAAAGGCTTTCTTCCCACCAACTT
* *
1029558 TTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACCTGGATTCTAGTAAGGATCTTCATTCAT
65 TTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATAGATTCTAGTAAGGATCTTCATTCAT
1029623 TTTGTAATTAGGCGCTATAAACACTTTCTC
130 TTTGTAATTAGGCGCTATAAACACTTTCTC
* * *
1029653 CTCATTAGGATAAATGAAATTAATGCTTTGGTTATCGCAAGAAAGGCTTTCTTCCCACCGATTTT
1 CTCATTAGGATAAATGAAATTAATGCTTTGGTTACCGCAAGAAAGGCTTTCTTCCCACCAACTTT
* *
1029718 TGTAAAGTCTAAGTTCATGCCTCACATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATT
66 TGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATAGATTCTAGTAAGGATCTTCATTCATT
* *
1029783 TTGTAATTA---GCTAGTAAACACATTCAC
131 TTGTAATTAGGCGCTA-TAAACACTTTCTC
* *
1029810 CTTATTATGATAAATGA
1 CTCATTAGGATAAATGA
1029827 TAGTGATGAT
Statistics
Matches: 154, Mismatches: 17, Indels: 7
0.87 0.10 0.04
Matches are distributed among these distances:
156 4 0.03
157 28 0.18
158 27 0.18
159 95 0.62
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (159 bp):
CTCATTAGGATAAATGAAATTAATGCTTTGGTTACCGCAAGAAAGGCTTTCTTCCCACCAACTTT
TGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATAGATTCTAGTAAGGATCTTCATTCATT
TTGTAATTAGGCGCTATAAACACTTTCTC
Found at i:1030394 original size:475 final size:470
Alignment explanation
Indices: 1029678--1031250 Score: 1736
Period size: 475 Copynumber: 3.3 Consensus size: 470
1029668 GAAATTAATG
* * * *
1029678 CTTTGGTTATCGCAAGAAAGGCTTTCTTCCCACCGATTTTTGTAAAGTCTAAGTTCATGCCTCAC
1 CTTTGGTT-TCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAATTCATGCCTCAA
*
1029743 ATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTAATT-AG--CTAGTAAACACA
65 ATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAAGCACTA-TAAACACA
* * * *
1029805 TTCACCTTATTATGATAAATGATAGTGATGATTTTCTTTTGCATGGAAATCTTTT-TTTGCCCTA
129 TTCTCCTCATTAGGATAAATGATATTGATGATTTTC-TTTGCATGGAAATCTTTTCTTTGCCCTA
* * * * *
1029869 TTTTCCTTAAAATCAAATTTTAATCCCCTAAAAATTACAAGCATCGATTCTCATAAGAGTCTCCA
193 TTTTCCTTAAAATCAAAATTT-ATTCCTTAAAAATGACAAGCATCGATTCTCATAAGAGTCTCTA
* * * * * *
1029934 CTCTTTTCGAGATTAGGAACTATGAACATATTCACCTCCTAAGGATACATAACATTGATGCTTTG
257 TTCTTTTCAAGATTAGGAACTAAGAACACATTC-CCTCCTTAGGATACATGACATTGATGCTTTG
* *
1029999 GTGTCGCAAGAAAAGCTTTTCTTTCAACCGCTTTTGATAGAATCAAAGTCTGCCTCTTAAAAAAG
321 GTGTCGCAAGAAAAGCTTTTCTTTCCACCG-TTTTGATAGAATCAAAGT-TGCCTCTTAAATAAG
* * * ** * * *
1030064 ATAAACATGAATATTCATAATAGTCCATAGTCTTTCTAGGATTTA-GCAGCCATAAACATTGCCT
384 ACAAACATGAATAGTCATAATAATCCCCATTCTTTCTAGGA-TTAGGCA-CCATAAACATAGTCT
*
1030128 TCTATAATGATACACGATATTGACA
447 TCTATAAGGATACACGATATTGA-A
* *
1030153 CTTTGGTTTCACAGGAAAGGCTTT-TTCCCCCCAATTTTTGTAAAGTCTAAATTCATGCCTCAAA
1 CTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAATTCATGCCTCAAA
* * * * * *
1030217 TGAGACAAACATGGATTCTAGTAAGGATCTTTATTCATTTTGTGATTAAGCAGTATAAATACTTT
66 TGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAAGCACTATAAACACATT
* * *
1030282 CTCCTCATTAGGATAAATGATTTTGATGATTTTCGTTTGCATGGAAATCTTTTCTTAGCCCTAAT
131 CTCCTCATTAGGATAAATGATATTGATGATTTTC-TTTGCATGGAAATCTTTTCTTTGCCCTATT
* * * * ***
1030347 TTACTTAAATTCAAAATTTATTCCTTAAAAATGATAAGTATCGATTCTCATTTCAGTCTCTATTC
195 TTCCTTAAAATCAAAATTTATTCCTTAAAAATGACAAGCATCGATTCTCATAAGAGTCTCTATTC
* * * * *
1030412 TTTTCAAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGATATTGATGCCTTGGTG
260 TTTTCAAGATTAGGAACTAAGAACACATTCCC-TCCTTAGGATACATGACATTGATGCTTTGGTG
* * * * *
1030477 TCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCAATAGAATCAAAGTTTCTCTCTTAATTATGACA
324 TCGCAAGAAAAGCTTTTCTTTCCACCGTTTT-GATAGAATCAAAGTTGC-CTCTTAAATAAGACA
* * *
1030542 AAGATGAATAGTCAT-ATGAATCCCCATTTTTTTTAGGATTAGGCACCATAAACATAGTCTTCT-
387 AACATGAATAGTCATAAT-AATCCCCATTCTTTCTAGGATTAGGCACCATAAACATAGTCTTCTA
* *
1030605 TAGTAGGATAGACGATATTGATG
451 TA--AGGATACACGATATTGA-A
* * * * *
1030628 CTTTGGTATCACAAGAAAGGCTTTCTTCCCCCCAATTTTTGCAAAGTGTAAATTCGTGCCTCAAA
1 CTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAATTCATGCCTCAAA
* * * * * **
1030693 TGAAACAAACATAGATTCTAGTTATGAACTTCATTCGTTTTGTGATTAGGCACTATAAACACAAC
66 TGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAAGCACTATAAACACATT
* * * ***
1030758 CTCTTTATTAGGGTAAATGATATTGATGATTTTCTTTGGCAT-GAAATTCTTTTCTTTGGAATAT
131 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTT-GCATGGAAA-TCTTTTCTTTGCCCTAT
* * * *
1030822 TTTCCTTAAAATCAAAAATCA-TCATTTAAATATGACAAGCATCGATTCTCATAAGAGTCTCTAT
194 TTTCCTTAAAATCAAAATTTATTC-CTTAAAAATGACAAGCATCGATTCTCATAAGAGTCTCTAT
* * * * * *
1030886 TCTTTTTAAGATTAGAAACTAAGAACACATTCCTTCCATTAGAATACATGACATTGTTGTTTTGG
258 TCTTTTCAAGATTAGGAACTAAGAACACATTCCCTCC-TTAGGATACATGACATTGATGCTTTGG
* * * * *
1030951 TGTCACAAGAAAAGCATTT-TTTCCTCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAACA
322 TGTCGCAAGAAAAGCTTTTCTTTCCACCG-TTTTGATAGAATCAAAG-TTGCCTCTTAAATAAGA
** * * *
1031015 CAAACATGAAGGGTCATACTAATCCCCATTCAATTC-AGGATTAGGCACCAAAAACATAGTCTTC
385 CAAACATGAATAGTCATAATAATCCCCATTC-TTTCTAGGATTAGGCACCATAAACATAGTCTTC
* *
1031079 TCATTAGGATACAATG-TATTGAA
449 T-ATAAGGATAC-ACGATATTGAA
* * * * * *
1031102 GCTTTGGTTTCGCAGGAAAGGCTTTTTTCCCACCAA--CTTGTAAAGTCTAAGTTCAAGCCTCAA
1 -CTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAATTCATGCCTCAA
* * * * * *
1031165 ATGAGACAAACATGGATTCTAGTAATAATCTTCATTAATTTTGTGATTAGGCACTATAAACGCTT
65 ATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAAGCACTATAAACACAT
*
1031230 TCTCCTCTTTAGGATAAATGA
130 TCTCCTCATTAGGATAAATGA
1031251 ATTTAATGCT
Statistics
Matches: 911, Mismatches: 163, Indels: 50
0.81 0.15 0.04
Matches are distributed among these distances:
473 173 0.19
474 45 0.05
475 402 0.44
476 290 0.32
477 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (470 bp):
CTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAATTCATGCCTCAAA
TGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAAGCACTATAAACACATT
CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTGCATGGAAATCTTTTCTTTGCCCTATTT
TCCTTAAAATCAAAATTTATTCCTTAAAAATGACAAGCATCGATTCTCATAAGAGTCTCTATTCT
TTTCAAGATTAGGAACTAAGAACACATTCCCTCCTTAGGATACATGACATTGATGCTTTGGTGTC
GCAAGAAAAGCTTTTCTTTCCACCGTTTTGATAGAATCAAAGTTGCCTCTTAAATAAGACAAACA
TGAATAGTCATAATAATCCCCATTCTTTCTAGGATTAGGCACCATAAACATAGTCTTCTATAAGG
ATACACGATATTGAA
Found at i:1031336 original size:159 final size:155
Alignment explanation
Indices: 1031077--1031415 Score: 437
Period size: 159 Copynumber: 2.1 Consensus size: 155
1031067 AACATAGTCT
* * *
1031077 TCTCATTAGGATACAATGTATTGAAGCTTTGGTTTCGCAGGAAAGGCTTTTTTCCCACCAACTTG
1 TCTCATTAGGATA-AATGAATTGAAGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAACTTG
* *
1031142 TAAAGTCTAAGTTCAAGCCTCAAATGAGACAAACATGGATTCTAGTAATAATCTTCATTAATTTT
65 TAAAGTCTAAGTTCAAGCCGCAAATGAGACAAACATGGATTCTAGCAATAATCTTCATTAATTTT
* * *
1031207 GTGATTAGGCACTATAAACGCTTTC-
130 GTAATTAGGAACTATAAACACTTTCA
* * * *
1031232 TCCTCTTTAGGATAAATGAATTTAATGCTTTGGTTTTCACAAGAAAGGCTTTTTTTCCACCGATT
1 T-CTCATTAGGATAAATGAATTGAA-GCTTTGG-TTTCACAAGAAAGGCTTTTTTCCCACC-A-A
* ** * *
1031297 TTTGTAAAGTCTAAGTTCGTGCCGCAAATGAGACAAACATGGATTCTAGCAATGATCTTCATTCA
61 CTTGTAAAGTCTAAGTTCAAGCCGCAAATGAGACAAACATGGATTCTAGCAATAATCTTCATTAA
* *
1031362 TTTTGTAATTATGAACTATTAACACTTTCA
126 TTTTGTAATTAGGAACTATAAACACTTTCA
1031392 TCTCATTAGGATAAATGATATTGA
1 TCTCATTAGGATAAATGA-ATTGA
1031416 TGATTTTCTT
Statistics
Matches: 156, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
155 10 0.06
156 18 0.12
157 24 0.15
158 1 0.01
159 98 0.63
160 5 0.03
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.36
Consensus pattern (155 bp):
TCTCATTAGGATAAATGAATTGAAGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAACTTGT
AAAGTCTAAGTTCAAGCCGCAAATGAGACAAACATGGATTCTAGCAATAATCTTCATTAATTTTG
TAATTAGGAACTATAAACACTTTCA
Found at i:1032035 original size:408 final size:409
Alignment explanation
Indices: 1031258--1032037 Score: 1007
Period size: 408 Copynumber: 1.9 Consensus size: 409
1031248 TGAATTTAAT
* * *
1031258 GCTTTGGTTTTCACAAGAAAGGCTTTTTTTCCACCGATTTTTGTAAAGTCTAAGTTCGTGCCGCA
1 GCTTTGGTTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAATTCGTGCCGCA
* * *
1031323 AATGAGACAAACATGGATTCTAGCAATGATCTTCATTCATTTTGTAATTATGAACTATTAACACT
66 AATGAGACAAACATGGATTCTAGCAAGGATCTTCATTCATTTTGTAATTAGGAACTATAAACACT
* * * *
1031388 TTCATCTCATTAGGATAAATGATATTGATGATTTTCTTTTCCATGGAAATCTTTTCTTTGCCCTT
131 TTCACCTCATTAGGATAAATGATATTGATGATTTTCGTTTACATGGAAATCTTTTCTTTGACCTT
* * *
1031453 TTTTCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCATAAGAGTCTCCACT
196 TTTACTTAAAATCAAAATTCATCACTTAAATATGACAAGCATCGATTCTCATAAGAGCCTCCACT
* * * * **
1031518 CTTTTCGAGATTGGGAACTAAGAACTCATTCTCCTCATTAGGATACATATCATTGATGCTTTAGT
261 CTTTTCAAGATTGGGAACCAAAAACACATTCTCCTCATTAGGATACATATCATTGATGAGTTAGT
* *
1031583 GTCGCAAGAAAAACTTTTCTTTCAATCATTTTTGATAAAATCAAAGTCTACCTCTTATCTTCTAT
326 GTCGCAAGAAAAACTTTTCTTTCAACCATTTTCGATAAAATCAAAGTCTACCTCTTATCTTCTAT
1031648 AAGGATACACGACATTGAC
391 AAGGATACACGACATTGAC
* * *
1031667 GCTTTGGTTTT-ATAAGAAAGGCTTTTTTCCCATCAATTTTTGTAAAGTCTAAATTCAG-GCCTC
1 GCTTTGGTTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAATTC-GTGCCGC
* * * * * *
1031730 AAATGAGACAAACGTGGATTCTAGTAAGGATCTTTATTCATTTTGTGATTAGGCACTATAAACGC
65 AAATGAGACAAACATGGATTCTAGCAAGGATCTTCATTCATTTTGTAATTAGGAACTATAAACAC
* *
1031795 -TTCCCCTCATTAGGATAAATGATATTGATGATTTTCGTTTACATGTAAATCTTTTCTTT-ACCT
130 TTTCACCTCATTAGGATAAATGATATTGATGATTTTCGTTTACATGGAAATCTTTTCTTTGACCT
* * * * * * **
1031858 TAATTTACTTCAAATCAGAATTCGTCATTTAAATATGACGAGCATTGATTCT-AGTATTAGCCTC
195 T--TTTACTTAAAATCAAAATTCATCACTTAAATATGACAAGCATCGATTCTCA-TAAGAGCCTC
* * * *
1031922 TATTCTTTTCAAGATTTGGAACCAAAAAGACATTC-CCTTCATTAGGATACATGA-CATTGATGA
257 CACTCTTTTCAAGATTGGGAACCAAAAACACATTCTCC-TCATTAGGATACAT-ATCATTGATGA
* ** * * *
1031985 GTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGT
320 GTTAGTGTCGCAAGAAAAACTTTTCTTTCAACCATTTTCGATAAAATCAAAGT
1032038 TTCTCTCTTA
Statistics
Matches: 315, Mismatches: 50, Indels: 13
0.83 0.13 0.03
Matches are distributed among these distances:
406 4 0.01
407 57 0.18
408 241 0.77
409 13 0.04
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (409 bp):
GCTTTGGTTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAATTCGTGCCGCA
AATGAGACAAACATGGATTCTAGCAAGGATCTTCATTCATTTTGTAATTAGGAACTATAAACACT
TTCACCTCATTAGGATAAATGATATTGATGATTTTCGTTTACATGGAAATCTTTTCTTTGACCTT
TTTACTTAAAATCAAAATTCATCACTTAAATATGACAAGCATCGATTCTCATAAGAGCCTCCACT
CTTTTCAAGATTGGGAACCAAAAACACATTCTCCTCATTAGGATACATATCATTGATGAGTTAGT
GTCGCAAGAAAAACTTTTCTTTCAACCATTTTCGATAAAATCAAAGTCTACCTCTTATCTTCTAT
AAGGATACACGACATTGAC
Found at i:1032737 original size:475 final size:471
Alignment explanation
Indices: 1031680--1032766 Score: 1191
Period size: 474 Copynumber: 2.3 Consensus size: 471
1031670 TTGGTTTTAT
* * *
1031680 AAGAAAGGCTTTTTTCCCATCAATTTTTGTAAAGTCTAAATTCAGGCCTCAAATGAGACAAACGT
1 AAGAAAGGCTTTTTTCCCA-CAA-TTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACAT
*
1031745 GGATTCTAGTAAGGATCTTTATTCATTTTGTGATTAGGCACTATAAACGCTTCCCCTCATTAGGA
64 GGATTCTAGTAA-GATCTTTATTCATTTTGTGATTAGGCACTATAAACGCTTCTCCTCATTAGGA
*** * * *
1031810 TAAATGATATTGATGATTTTCGTTTACATGTAAATCTTTTCTTTACCTTAATTTACTTCAAATCA
128 TAAATGATAACAATGATTTTCGTTTACATGGAAATCTTTTCTTTACCTTAATTTACTTAAAATAA
* * * ** ** *
1031875 GAATTCGTCATTTAAATATGACGAGCATTGATTCTAGTATTAGCCTCTATTCTTTTCAAGATTTG
193 AAATTCATCATTTAAATATGACAAGCATCAATTCTAGTAAGAGCCTCTATTCTTTTCAAGATTAG
* ** * *
1031940 GAACCAAAAAGACATTCCCTTCATTAGGATACATGACATTGATGAGTTGGTGTCGCAAGAAAAGG
258 GAACCAAAAAGACATTCCCATCATTAAAATACATGACATTGATGAGTTGGTGTCACAAGAAAAGC
** * *
1032005 TTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTTCTCTCTTAATTAAGACAAACAAATAGTCAT
323 TTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTTCTCTCTTAAAAAACACAAACAAATAATCAT
* ** * * * * * *
1032070 ACGAATCCCCATTTTTTTTTGGGATTAGGCACCATAAACATAGGCTTCTCAGTAGAATAGATGAT
388 ACAAATCCCCATTCATTATAGGGATAAGGCACCATAAACATACGCTTCTCAGTAGAATACAAGAT
* * * * *
1032135 ATTGATGCTTTGGTATCGT
453 ATTAACGATTTGGTATAGC
* * * * ** * *
1032154 AAGAAAGGATTTCTTCCCCCCAATTTTTTCAAAGGGTAAGTTCGTGGCTCAAATGAGACAAACAT
1 AAGAAAGGCTTT-TTTCCCACAATTTTGT-AAAGTCTAAGTTCATGCCTCAAATGAGACAAACAT
* * * * * *
1032219 AGATTTTAGTAATGATCTTTATTCATTTTGTCATTAAGCACTATAAACACAATCTCCTCATTAGG
64 GGATTCTAGTAA-GATCTTTATTCATTTTGTGATTAGGCACTATAAACGC-TTCTCCTCATTAGG
* * * *
1032284 ATAAATGATAACAATGATTTTCTTTTGCATGGAAATCTTTTCTTTGGCC-T-ATTTCCTTAAAAT
127 ATAAATGATAACAATGATTTTCGTTTACATGGAAATCTTTTCTTT-ACCTTAATTTACTTAAAAT
* * * **
1032347 AAAAAATT-ATCCTTTACATATGACAAGCATCAATTCTCA-TAAGAGTCT-TCATTCTTTTTGAG
191 -AAAAATTCATCATTTAAATATGACAAGCATCAATTCT-AGTAAGAGCCTCT-ATTCTTTTCAAG
* * * * **
1032409 ATTAGGAA-CTAAGAGCACATTCCCATCTTTAAAATACATGACATTGTTGTTTTGGTGTCACAAG
253 ATTAGGAACCAAAAAG-ACATTCCCATCATTAAAATACATGACATTGATGAGTTGGTGTCACAAG
* * *
1032473 AAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAACACAAACTTGA
317 AAAAGCTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTTCTCTCTTAAAAAACACAAAC--AA
* ** * * *
1032538 ATAATCGTACAAATCCTGATTCATTATAGGG-TAAGGCACCATAGACATACTCTTCTCATTA-AG
380 ATAATCATACAAATCCCCATTCATTATAGGGATAAGGCACCATAAACATACGCTTCTCAGTAGA-
* *
1032601 ATACAAGGTATTAACGATTTGGTTTAGC
444 ATACAAGATATTAACGATTTGGTATAGC
*
1032629 AAGAAAGGCTTTTTTCCCACAACCTTTTGTAAAGTCTAAGTTCATACCTCAAATGAGACAAACAT
1 AAGAAAGGCTTTTTTCCCACAA--TTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACAT
* *
1032694 GGATTCTAGTAAGAATCTTCATTCATTTTGTGATTAGGCACTATAAACGCTTTCTCTTCATTAGG
64 GGATTCTAGTAAG-ATCTTTATTCATTTTGTGATTAGGCACTATAAACGC-TTCTCCTCATTAGG
1032759 ATAAATGA
127 ATAAATGA
1032767 AATTGATGCT
Statistics
Matches: 499, Mismatches: 100, Indels: 27
0.80 0.16 0.04
Matches are distributed among these distances:
473 11 0.02
474 248 0.50
475 210 0.42
476 30 0.06
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.36
Consensus pattern (471 bp):
AAGAAAGGCTTTTTTCCCACAATTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGG
ATTCTAGTAAGATCTTTATTCATTTTGTGATTAGGCACTATAAACGCTTCTCCTCATTAGGATAA
ATGATAACAATGATTTTCGTTTACATGGAAATCTTTTCTTTACCTTAATTTACTTAAAATAAAAA
TTCATCATTTAAATATGACAAGCATCAATTCTAGTAAGAGCCTCTATTCTTTTCAAGATTAGGAA
CCAAAAAGACATTCCCATCATTAAAATACATGACATTGATGAGTTGGTGTCACAAGAAAAGCTTT
TCTTTCCACCGTTTTCGATAGAATCAAAGTTTCTCTCTTAAAAAACACAAACAAATAATCATACA
AATCCCCATTCATTATAGGGATAAGGCACCATAAACATACGCTTCTCAGTAGAATACAAGATATT
AACGATTTGGTATAGC
Found at i:1032961 original size:159 final size:158
Alignment explanation
Indices: 1032616--1032946 Score: 391
Period size: 159 Copynumber: 2.1 Consensus size: 158
1032606 AGGTATTAAC
* * * * * * *
1032616 GATTTGGTTTAGCAAGAAAGGCTTTTTTCCCA-CAACCTTTTGTAAAGTCTAAGTTCATACCTCA
1 GATTTGTTTTTGCAACAAAGGCTTTCTTCCCATCGA-TTTTTGTAAAGTCTAAGTTCATACCGCA
* * * * *
1032680 AATGAGACAAACATGGATTCTAGTAAGAATCTTCATTCATTTTGTGATTAGGCACTATAAACGCT
65 AATGAGACAAACATGGATTCCAGCAAGAATCTTCATTCATTTTGTAATTAGGAACTATAAACACT
* *
1032745 TTCTCTTCATTAGGATAAATGAAATTGAT
130 TTCCCTTCAGTAGGATAAATGAAATTGAT
* * * * *
1032774 GCTTTGGTTTTTGTAACAAAGGCTTTCTTCCCATCGATTTTTGTCAAGTCTAAGTTCGTGCCGCA
1 GATTT-GTTTTTGCAACAAAGGCTTTCTTCCCATCGATTTTTGTAAAGTCTAAGTTCATACCGCA
* *
1032839 AATGAGACAAACATGGATTCCAGCAATG-ATCTTCATTCATTTTGTAATTAGGAACTATTAACAT
65 AATGAGACAAACATGGATTCCAGCAA-GAATCTTCATTCATTTTGTAATTAGGAACTATAAACAC
*
1032903 TTTCACCTT-AGTAGGATAAATGATATTGAT
129 TTTC-CCTTCAGTAGGATAAATGAAATTGAT
1032933 GATTT-TCTTTTGCA
1 GATTTGT-TTTTGCA
1032947 TGGAAATCTT
Statistics
Matches: 144, Mismatches: 24, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
157 1 0.01
158 10 0.07
159 127 0.88
160 6 0.04
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.37
Consensus pattern (158 bp):
GATTTGTTTTTGCAACAAAGGCTTTCTTCCCATCGATTTTTGTAAAGTCTAAGTTCATACCGCAA
ATGAGACAAACATGGATTCCAGCAAGAATCTTCATTCATTTTGTAATTAGGAACTATAAACACTT
TCCCTTCAGTAGGATAAATGAAATTGAT
Found at i:1034233 original size:475 final size:471
Alignment explanation
Indices: 1033177--1034274 Score: 1227
Period size: 473 Copynumber: 2.3 Consensus size: 471
1033167 GATACACGAT
* * * * *
1033177 ATTTGGTTTCACAAGAAAGGTTTTTTTCGCACCAACTGTTGTAATGTCTAAATTCATGCCTCAAA
1 ATTTGGTTTCGCAAGAAAGG-TTTTTTCCCA-CAACTTTTGTAAAGTCTAAGTTCATGCCTCAAA
* *
1033242 TGAGACAAACGTGGATTCTAGTAA-AGATCTTTATTCATTTTGTGATTAGGCACTATAAACACTT
64 TGAGACAAACATGGATTCTAGTAAGA-ATCTTCATTCATTTTGTGATTAGGCACTATAAACACTT
* *** * * *
1033306 CCCCTCATTAGGATAAATGATATTGATGATTTTCGTTTGCATGTAAATCTTTTCTTTGCCCTATT
128 CTCCTCATTAGGATAAATGATAACAATGATTTTCGTTTACATGGAAATCTTTTCGTTGCCCTATT
* * * * * * * **
1033371 TTACTTATAACTAGAATTCATCCTTTAAATATGACGAGCATCGATTCTAGTATTAGCCTCTATTT
193 TTACTTAAAACAAAAATTCATCCTTTAAATAGGACAAGCATCAATTCTAGAAGGAGCCTCTATTT
* * * * *
1033436 TTTTCAAGATTTGGAACCTATAACACATTCCCTTCATTAGGATACATGACATTGATGATTTGGTG
258 TTTTCAAGATTAGGAACCTAGAACACATTCCCGTCATTAGAATACACGACATTGATGATTTGGTG
* * ** *
1033501 TCGCAAAAAAAGGTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTCTCTATTAATTAAGACA
323 TCACAAAAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTCTCTATTAAAAAACACA
* * * * * * * *
1033566 AACAAATAGTCATACGAATCCCCATTTTTTTGGGGATTAGGCACCATAAACATAGTCTTCTCAGT
388 AACAAATAATCATACAAATCCCAATTATTATGAGGATAAGGCACCATAAACATACTCTTCTCAGT
* * * *
1033631 AGAATAGATGATATTGATG
453 AGAATACAAGATATTAACG
* * * * * * *
1033650 CTTTGGTATCGTAAGAAAGGTTTTCTTCCCCCCAA-TTTTTTCAAAGTGTAAGTTCGTGCCTCAA
1 ATTTGGTTTCGCAAGAAAGGTTTT-TT-CCCACAACTTTTGT-AAAGTCTAAGTTCATGCCTCAA
* * * *
1033714 ATGAGACAAATATAGATTCTAGTAATG-ATCTTCATTCTTTTTGTGATTAAGCACTATAAACACA
63 ATGAGACAAACATGGATTCTAGTAA-GAATCTTCATTCATTTTGTGATTAGGCACTATAAACAC-
* * *
1033778 ATCTCCTCATTAGGATAAATGATAACAATGATTTTCTTTTACATGGAAATCTTTTCGTTGGCCTA
126 TTCTCCTCATTAGGATAAATGATAACAATGATTTTCGTTTACATGGAAATCTTTTCGTTGCCCTA
* * *
1033843 -TTTCCTTAAAATCAAAAATT-ATCCTTTACATAGGACAAGCATCAATTCTCA-AAGGAGTCT-T
191 TTTTACTTAAAA-CAAAAATTCATCCTTTAAATAGGACAAGCATCAATTCT-AGAAGGAGCCTCT
1033904 CATTCTTTTT-AAGATTAGGAA-CTAAGAACACATTCCCGTCATTAGAATACACGACATT-ATTG
254 -ATT-TTTTTCAAGATTAGGAACCT-AGAACACATTCCCGTCATTAGAATACACGACATTGA-TG
* * * * * *
1033966 -TTTCGGTGTCACAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTA
315 ATTT-GGTGTCACAAAAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTCTCTATTA
1034030 AAAAACACAAACTTGAAA-AATCATACAAATCCCAATTCATTAT-AGGATAAGGCAACC-TAAAC
379 AAAAACACAAAC---AAATAATCATACAAATCCCAATT-ATTATGAGGATAAGGC-ACCATAAAC
* *
1034092 ATACTCTTCTCATTA-AGATACAAGGTATTAACG
439 ATACTCTTCTCAGTAGA-ATACAAGATATTAACG
1034125 ATTTGGTTTCGCAAGAAAGGCTTTTTTCCCACAACCTTTTGTAAAGTCTAAGTTCATGCCTCAAA
1 ATTTGGTTTCGCAAGAAAGG-TTTTTTCCCACAA-CTTTTGTAAAGTCTAAGTTCATGCCTCAAA
*
1034190 TGAGACAAACATGGATTCTAGTAAGAATCTTCATTCATTTTGTGATTAGGCACTATAAACGCTTT
64 TGAGACAAACATGGATTCTAGTAAGAATCTTCATTCATTTTGTGATTAGGCACTATAAACAC-TT
*
1034255 CTCTTCATTAGGATAAATGA
128 CTCCTCATTAGGATAAATGA
1034275 AATTGATGCT
Statistics
Matches: 517, Mismatches: 85, Indels: 44
0.80 0.13 0.07
Matches are distributed among these distances:
472 15 0.03
473 239 0.46
474 77 0.15
475 168 0.32
476 18 0.03
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (471 bp):
ATTTGGTTTCGCAAGAAAGGTTTTTTCCCACAACTTTTGTAAAGTCTAAGTTCATGCCTCAAATG
AGACAAACATGGATTCTAGTAAGAATCTTCATTCATTTTGTGATTAGGCACTATAAACACTTCTC
CTCATTAGGATAAATGATAACAATGATTTTCGTTTACATGGAAATCTTTTCGTTGCCCTATTTTA
CTTAAAACAAAAATTCATCCTTTAAATAGGACAAGCATCAATTCTAGAAGGAGCCTCTATTTTTT
TCAAGATTAGGAACCTAGAACACATTCCCGTCATTAGAATACACGACATTGATGATTTGGTGTCA
CAAAAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTCTCTATTAAAAAACACAAAC
AAATAATCATACAAATCCCAATTATTATGAGGATAAGGCACCATAAACATACTCTTCTCAGTAGA
ATACAAGATATTAACG
Found at i:1034337 original size:159 final size:158
Alignment explanation
Indices: 1034126--1034441 Score: 431
Period size: 159 Copynumber: 2.0 Consensus size: 158
1034116 GTATTAACGA
* *
1034126 TTTGGTTTCGCAAGAAAGGCTTTTTTCCCACAACCTTTTGTAAAGTCTAAGTTCATGCCT-CAAA
1 TTTGGTTTCACAAGAAAGGCTTTCTTCCCACAACCTTTTGTAAAGTCTAAGTTCATG-CTGCAAA
* * * * *
1034190 TGAGACAAACATGGATTCTAGTAA-GAATCTTCATTCATTTTGTGATTAGGCACTATAAACGCTT
65 TAAGACAAACATGGATTCTAGCAATG-ATCTTCATTCATTTTGTAATTAGGAACTATAAACACTT
* * *
1034254 TCTCTTCATTAGGATAAATGAAATTGATGC
129 TCACCTCATTAGGAGAAATGAAATTGATGC
* * * *
1034284 TTTGGTTTTCACAAGAAAGGCTTTCTTCCCACCGA-TTTTTGTCAAGTCTAAGTTCGTGCTGCAA
1 TTTGG-TTTCACAAGAAAGGCTTTCTTCCCA-CAACCTTTTGTAAAGTCTAAGTTCATGCTGCAA
*
1034348 ATAAGACAAACATGGATTCTAGCAATGATCTTCATTCATTTTGTAATTAGGAACTATTAACACTT
64 ATAAGACAAACATGGATTCTAGCAATGATCTTCATTCATTTTGTAATTAGGAACTATAAACACTT
*
1034413 TCACCTCATTAGGAGAAATGATATTGATG
129 TCACCTCATTAGGAGAAATGAAATTGATG
1034442 ATTTTCTTTT
Statistics
Matches: 138, Mismatches: 16, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
158 7 0.05
159 128 0.93
160 3 0.02
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.35
Consensus pattern (158 bp):
TTTGGTTTCACAAGAAAGGCTTTCTTCCCACAACCTTTTGTAAAGTCTAAGTTCATGCTGCAAAT
AAGACAAACATGGATTCTAGCAATGATCTTCATTCATTTTGTAATTAGGAACTATAAACACTTTC
ACCTCATTAGGAGAAATGAAATTGATGC
Found at i:1035057 original size:407 final size:408
Alignment explanation
Indices: 1034276--1035057 Score: 1090
Period size: 407 Copynumber: 1.9 Consensus size: 408
1034266 GATAAATGAA
* * * * * *
1034276 ATTGATGCTTTGGTTTTCACAAGAAAGGCTTTCTTCCCACCGATTTTTGTCAAGTCTAAGTTCGT
1 ATTGACGCCTTGGTTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAATTCAT
* * * *
1034341 GCTGCAAATAAGACAAACATGGATTCTAGCAATGATCTTCATTCATTTTGTAATTAGGAACTATT
66 GCTGCAAATAAGACAAACATGGATTCTAGCAAGGATATTCATCCATTTTGTAATTAGGAACTATA
*
1034406 AACACTTTCACCTCATTAGGAGAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTT
131 AACACTTTCACCTCATTAGGAGAAATGATATTGATGATTTTCGTTTGCATGGAAATCTTTTCTTT
* * * *
1034471 GCCCTTTTTGTTAAAATCATAATTCATCCCTTAAATAGGACAAGCATCGATTCTCATAAGAGTCT
196 GCCCTTTTTCTTAAAATCAAAATTCATCCCTTAAATAGGACAAGCATCAATTCTCATAAGAGCCT
* * *
1034536 CCACTCTTTTCGAGATTGGGAACTAAAAACACATTCTCCTCATTAGGATACATAACATTGATGCT
261 CCACTCTTTTCAAGATTGGGAACCAAAAACACATTCTCCTCATTAGGATACATAACATTGATGAT
*
1034601 TTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAAAATCAAAGTCTACCTCTTATCT
326 TTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTCGATAAAATCAAAGTCTACCTCTTATCT
1034666 TCTATAAGGATACACGAT
391 TCTATAAGGATACACGAT
*
1034684 ATTGACGCCTTGG-TTTCACAAGAAAGGCTTT-TTCCCATCAATTTTTGTAAAGTCTAAATTCAT
1 ATTGACGCCTTGGTTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAATTCAT
* ** * * * *
1034747 GCCT-CAAATAAGGCAAATGTGGATTCTAGTAAGGATATTTATCCATTTTGTGATTAGGCACTAT
66 G-CTGCAAATAAGACAAACATGGATTCTAGCAAGGATATTCATCCATTTTGTAATTAGGAACTAT
* * * *
1034811 AAACAC-TTCACTTCATTAGGATAAATGATATTGATGATTTTCGTTTGCATGTAAATTTTTTCTT
130 AAACACTTTCACCTCATTAGGAGAAATGATATTGATGATTTTCGTTTGCATGGAAATCTTTTCTT
* * **
1034875 TGCCCTATTTTACTTAAAATCAAAATTCATCCTTTAAATATGACAAGCATCAATTCT-AGTATTA
195 TGCCCT-TTTT-CTTAAAATCAAAATTCATCCCTTAAATAGGACAAGCATCAATTCTCA-TAAGA
* * * * *
1034939 GCCTCTATTCTTTTCAAGATTTGGAACCAAGAACACATTC-CCTTCATTAGGATACATGACATTG
257 GCCTCCACTCTTTTCAAGATTGGGAACCAAAAACACATTCTCC-TCATTAGGATACATAACATTG
* * *
1035003 ATGATTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAA
321 ATGATTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTCGATAAAATCAAA
1035058 ATTTCTCTCT
Statistics
Matches: 326, Mismatches: 43, Indels: 11
0.86 0.11 0.03
Matches are distributed among these distances:
405 59 0.18
406 90 0.28
407 166 0.51
408 11 0.03
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (408 bp):
ATTGACGCCTTGGTTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAATTCAT
GCTGCAAATAAGACAAACATGGATTCTAGCAAGGATATTCATCCATTTTGTAATTAGGAACTATA
AACACTTTCACCTCATTAGGAGAAATGATATTGATGATTTTCGTTTGCATGGAAATCTTTTCTTT
GCCCTTTTTCTTAAAATCAAAATTCATCCCTTAAATAGGACAAGCATCAATTCTCATAAGAGCCT
CCACTCTTTTCAAGATTGGGAACCAAAAACACATTCTCCTCATTAGGATACATAACATTGATGAT
TTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTCGATAAAATCAAAGTCTACCTCTTATCT
TCTATAAGGATACACGAT
Found at i:1036710 original size:476 final size:474
Alignment explanation
Indices: 1035793--1040056 Score: 4109
Period size: 476 Copynumber: 9.0 Consensus size: 474
1035783 CTCACCATCG
* * **
1035793 ATTTTTGTAAAGTCTATGTTCGTACCTCAAATGAGACAAACATGGATTCTAGTAATGATCATCAT
1 ATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATC-TTTT
* * * * * *
1035858 TCATTTTGTAATTAGGCATTATTAACACATTCACCTCATTAGGATAAATGATATTGATAATTTTC
65 TCATTTTGTGATTAGGCACTATAAACACTTTCTCCTCATTAGGATAAATGATATTGATGATTTTC
* * * *
1035923 TTTTGCATGGAAATATTTTCTTTGCCCTATTTTCTTTAAAATCAAAATTTATCCCTTAAATATGA
130 TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTC-CTAAAATCAAAATTCATCCCTTAAATAAGA
* * * * * *
1035988 CAAGCATTGATTCTCATAAGAGTCTCCACTCTTATCCAGATTGGGAACTAAGAACACATTCACC-
194 CAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACACA-TC-CCG
* * * * *
1036052 TCATTAGGATACATAACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTG
257 TTATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTTTG
* * ** * * * *
1036117 ATAGAATCAAAATCTACCTTTTAAATAAGGCAAACA-GGAATAGTCATATTAATCCCCATTC-GT
322 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGG-ATAGTCATACTAATCCCCATTCTTT
* * *
1036180 CTTAGGATTCA-GCACCATAAACATAGTCTTTTCATAACGATACA-GAATATTGATGCTTTGGTT
386 TTTAGGATT-AGGCACCATAAACATAGTCTTCTCATAAGGATACATG-ATATTGATGCTTTGGTT
** * *
1036243 TCGCAAGAAAGGCTTTTTTTTCACAA
449 TCGCAAGAAAGGCTTTTTTCCCCCCA
* * * * *
1036269 ATTTTTATAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGAATCTAGAAAGGATCTTCTT
1 ATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTT-TT
* * * *
1036334 TCATTTTGTGATTAGGCGCTATAAAAACTTTATCCTCAATAGGATAAATGATATTGATGATTTTC
65 TCATTTTGTGATTAGGCACTATAAACACTTTCTCCTCATTAGGATAAATGATATTGATGATTTTC
* * ** * * *
1036399 GTTTGCATGGGAATCTTCCCTTTACCCTATTTTCCTAAAATCAAAATTCATCCATTAAATATGAC
130 TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTAAAATCAAAATTCATCCCTTAAATAAGAC
** * * *
1036464 AATTATCGATTCTCGTAACAGTCTCCATTCTTTTCAAAATTGGGAA-TCAAGAACACAGCCCTTT
195 AAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACT-AAGAACACATCCC-GT
* * * *
1036528 TATTAGGATGCATGACATTGATGCTTTGAG-ATCGCAAGAAAAGCTTTTCTTTCCATC-TTTTTC
258 TATTAGGATACATGACATTGATGCTTTG-GTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTTT-
* * * * * * **
1036591 GATAGAATCAAAGTTTATCTCTTAATTAAGAAAAAGATGGATAGTCACACTATTCCCCACACTTT
321 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGGATAGTCATACTAATCCCCATTCTTT
* * * * * * *
1036656 TTTAGCATTAGACACCATAAATATAGTCTTCTTATTAGGATAGATGATATTGATGCTTTGGTATC
386 TTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTC
* ** *
1036721 GCAAGAAAGGCTTTCTTCCTACTA
451 GCAAGAAAGGCTTTTTTCCCCCCA
* ** * * **
1036745 GTTTTTAAAAAGTGTAAGTTCGTGCCTCCAATGAGACAAACATAAATTCTAGTAATGAT-TTTCA
1 ATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTT--
* * * *
1036809 TTCATTTTGTAATTTGGCACTATTAACACATTT-TCCTCATTAGGATAAGTGATATTGATGATTT
64 TTCATTTTGTGATTAGGCACTATAAACAC-TTTCTCCTCATTAGGATAAATGATATTGATGATTT
* * * *
1036873 TCTTTTGCAT-TATAATCTTTTCTTTGCCTTATTTTTCTTAAAATCAAAATTCATCCCTTAAATT
128 TCTTTTGCATGGA-AATCTTTTCTTTGCCCTA-TTTTCCTAAAATCAAAATTCATCCCTTAAATA
* * * * * * * *
1036937 TGACAAGCATCGATTGTCATAAAAGTCTCTATTCATTTT-GAGAGTAGGAACTAAGAACACATTC
191 AGACAAGCATCGATTCTCGTAACAGTCTCCATTC-TTTTCAAGATTGGGAACTAAGAACACA-TC
* * * *
1037001 CCTTTATTAGGATACATGACATT-ATTGTTTTGGTGTCGCAAGAAAAGGTTTTCTTTCTACCGTT
254 CCGTTATTAGGATACATGACATTGA-TGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATT
* * *
1037065 TTTGATAGAATCAAAGTTTGTCTC--ACAATATGACAAACTTGAATAGTCATACTAATAATCCCC
318 TTTGATAGAATCAAAGTTTGTCTCTTA-AATAAGACAAACATGGATAGTCATAC---TAATCCCC
* * * * * * * * *
1037128 GTTC-TTTTCAAGATTAGGCACCAAAAATATTGTCTTCTCAAAAGGATAGAAGATATTGATGCTT
379 ATTCTTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTT
* * *
1037192 TGGTTTGGAAAGAAAAGC---TTT---CCC-
444 TGGTTTCGCAAGAAAGGCTTTTTTCCCCCCA
* * **
1037216 -------T--A----AA-TTCGTGACTCAAATGAGACAAACATAGATTCTAGTAATGATGCTCAT
1 ATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGAT-CTTTT
* * * *
1037267 TCATTTTGTGATTGGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTAATGGTTTTC
65 TCATTTTGTGATTAGGCACTATAAACACTTTCTCCTCATTAGGATAAATGATATTGATGATTTTC
* * * * **
1037332 TTTTGGATGAAAATCTTTTCATTGCCCTATTTTCCTTAAAATCAAAATCCATCCCTTAGCTAAGA
130 TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCC-TAAAATCAAAATTCATCCCTTAAATAAGA
* * * * * *
1037397 CAAGCATCGATTC-CTGTAACGGTTTCCATTCTTTTTAAGAGTAGGAACTAAGAACACATTCCCT
194 CAAGCATCGATTCTC-GTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACACA-TCCCG
* *
1037461 TTATTAGGATACATGACATT-ATTGTTTTGGTGTCACAAGAAATA-GTTTTCTTTCCACCATTTT
257 TTATTAGGATACATGACATTGA-TGCTTTGGTGTCGCAAGAAA-AGGTTTTCTTTCCACCATTTT
* * * * * * *
1037524 TTATAGAATCAAAGCTTGTCTCTTAAATAAGACAAAAAAGAGA-AGTCGTACTAATCACCAATC-
320 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG-GATAGTCATACTAATCCCCATTCT
** * * * * * * *
1037587 TTTTCCGAATTACGAACCATAAACATAGCCTTCTTAAAAGGATAC-TCAATATTGATGCTTTGGT
384 TTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACAT-GATATTGATGCTTTGGT
*
1037651 TTTGCAAGAAAGGCTTTTTTCCCCCCA
448 TTCGCAAGAAAGGCTTTTTTCCCCCCA
** ** *
1037678 ATTTTTGTAGTGTCTAAGTTCGCACCTCAAATGAGACAAACATGGATTCTAGTAACGATCTTTGT
1 ATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTT-T
* * * * * *
1037743 TCATTTAGTGATTAGACACAATAAACAATTTCCCCTCATTTGGATAAATGATATTGATGATTTTC
65 TCATTTTGTGATTAGGCACTATAAACACTTTCTCCTCATTAGGATAAATGATATTGATGATTTTC
* **
1037808 TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAATTCATCTTTTAAATAAGA
130 TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTC-CTAAAATCAAAATTCATCCCTTAAATAAGA
* * * * * * * * *
1037873 CAAACATCGATTCTCATAATAATCTCTATTCTTTCCAAGATTGGGAACCACGAACACATTCTCGT
194 CAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACACA-TCCCGT
* * * *
1037938 TATTAGGAAACATGACATTGATGCTTTGGTATCGCAAGAAAA-GTTTATTTTTCCACC-TTTTTT
258 TATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTT-TCTTTCCACCATTTTTG
* * * *
1038001 ATCGAATCAAAGTTTG-CCCTTTAAATAAGACAAACATGAATAGTCATACTAATCTCCATTC-TT
322 ATAGAATCAAAGTTTGTCTC-TTAAATAAGACAAACATGGATAGTCATACTAATCCCCATTCTTT
* * * * ** *
1038064 TTCAGGATTAGGCACCATAAACATAGTCTTTTTCATAAGGATACAGGATATTAACACTTTGGATA
386 TTTAGGATTAGGCACCATAAACATAGTC-TTCTCATAAGGATACATGATATTGATGCTTTGG-TT
1038129 T-GCAAGAAAGG-TTTTCTTCCCCCCA
449 TCGCAAGAAAGGCTTTT-TTCCCCCCA
* * *
1038154 ATTTTTGTAAAGTCTATGTTCGTGCCGCAAAT--G----ACATGGATTCTAGTAATTATCTTTGT
1 ATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTT-T
* * * * * *
1038213 TCATTTTGTAATTAGACACT-TAAACAGTTTCTACTCATTAGGATAAATGATATTGAGGATTTTG
65 TCATTTTGTGATTAGGCACTATAAACACTTTCTCCTCATTAGGATAAATGATATTGATGATTTTC
* * * *
1038277 TTTTGCATGAAAATTTTTTCTTTGCCCAATTTTCTTTAAAATCAAAATTCATCCCTTAAATAAGA
130 TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTC-CTAAAATCAAAATTCATCCCTTAAATAAGA
* * * *
1038342 CAAGCATC-AGTTCTCATAACAGTCTTCATTCTTTTCAAGATTGGGAACCAAGAACACATTCTCG
194 CAAGCATCGA-TTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACACA-TCCCG
* * *
1038406 TTATTAGGATGA-ATGACATTGATGCTTTAGTGTTGCCAGAAAAGGTTTTCTTTCCACCATTTTT
257 TTATTAGGAT-ACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTTT
*
1038470 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-GAGCAGTCATACTAATCCCCATTC-T
321 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGGA-TAGTCATACTAATCCCCATTCTT
* * * *
1038533 TTTCAGGATTAGGCACCATAAATATTGTCTTCTCATAAGGATACACGATATTGATGCTTTGG-TT
385 TTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTT
* * *
1038597 CGTAAGAATGGCTTTCTTCCCCCCA
450 CGCAAGAAAGGCTTTTTTCCCCCCA
* * *
1038622 ATTTTTCTAGAGTCTATGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTGT
1 ATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTT-T
* * * * * *
1038687 TCATTTTGTGATTAGACACTATAAACATTTTCCCCTCAGTAGGATAAATGATTTTTATGATTTT-
65 TCATTTTGTGATTAGGCACTATAAACACTTTCTCCTCATTAGGATAAATGATATTGATGATTTTC
* * *
1038751 TTTTGCATGGAAATCTTTTCTTTGCCCAATTTTCCATAAAATCAAAACTCATCCCTTTAATAAGA
130 TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCC-TAAAATCAAAATTCATCCCTTAAATAAGA
* * *
1038816 CAAGCATCGATTCTCGTAGCAGTCTCTATTCTTTTCAAGATTGGGAACTAAGAACGCACTCCCGT
194 CAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACACA-TCCCGT
* * * * ** * *
1038881 TATTAGGATGCATGACATTGATGCTTTGGTGTCACAAGAAATGCTTTTAATTCCAACGTTTTTGA
258 TATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTTTGA
* * * ** *
1038946 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCACTGTTC-ATTT
323 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGGATAGTCATACTAATCCCCATTCTTTTT
* * *
1039010 TAGGATTAGGCACCATAAACATTA-TCTT-TCCATAAAGATAC-TCGATATCGAAGCTTTGGTTT
388 TAGGATTAGGCACCATAAACA-TAGTCTTCT-CATAAGGATACAT-GATATTGATGCTTTGGTTT
* * **
1039072 TGCAAGAAAGACTTTCCTCCCCCCA
450 CGCAAGAAAGGCTTTTTTCCCCCCA
* * * ** * *
1039097 ATTTTTGTAGAGTTTAAGTTTGTGCCTCTGATGAGACAACCTTGGATTCTAGTAATGATCTTGTT
1 ATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTT-TT
* * *
1039162 T-GTTTTGTGATTAGACA-TAATAAACA-TGTTCTCCTCATTAGAATAAATGATATTGATGATTT
65 TCATTTTGTGATTAGGCACT-ATAAACACT-TTCTCCTCATTAGGATAAATGATATTGATGATTT
** ** * * * * *
1039224 TCTTTTGTGTGGAAATCTTTTCTTCACCTTATTTTCCTTAAAGTCAAAATTTATCCCTTCAACAA
128 TCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCC-TAAAATCAAAATTCATCCCTTAAATAA
* * * * * *
1039289 GATGGATA-CATAAACATATTCTAGTAACAATCTCTATTATTTTCAAGATTGGGAACTATA-AAC
192 GA--CA-AGCAT---C-GATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACTA-AGAAC
* * * * * *
1039352 ATATTCCCGTTATTAGGATACATAACGTTGATGCTTTTGTGTCGCAAGAAAAGGTTTGCCTTCCA
249 ACA-TCCCGTTATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCA
* * * * * *
1039417 CCTTTTTTTATAGAATCAAAGTTTATCTCTTAAAAAAGACAAACAT-GAGTAATCGTACTAATCC
313 CCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGGA-TAGTCATACTAATCC
* * * * * * * *
1039481 CAATTC-TTTTTCGGATTAGGCTCCATGAACATTGTCTTCTCACAAGGATACAAGATATTGATGT
377 CCATTCTTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATGC
** * * *
1039545 TTTGGTTTCATAAGAAAGGATTTATTCCCCTCA
442 TTTGGTTTCGCAAGAAAGGCTTTTTTCCCCCCA
* * * *
1039578 A-CTTTGATAGAGTCTAAGTTCGAGCCTCAAA-GAGACAAACATGGATTCTGGTAATGATCTTTG
1 ATTTTTG-TAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTT-
** * * * * *
1039641 TTCACCTTGTGATTAGACATTATAAACACATTCTCCTCATTAAGATAAATGATATTGATGGTTTT
64 TTCATTTTGTGATTAGGCACTATAAACACTTTCTCCTCATTAGGATAAATGATATTGATGATTTT
* * * * *
1039706 TTTTTGCATGAAAATATTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCTTTAACTAAG
129 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCC-TAAAATCAAAATTCATCCCTTAAATAAG
* *
1039771 ACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGC-AA-AAGCACATTCC
193 ACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAA-CTAAGAA-CACATCCC
* * *
1039834 ATTCATTAGGATACATGAGATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCCTTCCACCATTTT
256 GTT-ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTT
* * * * **
1039899 TTATAGTATCAAAGTTTGTCTCTTAAAAAACACAAACAT-GAGTAGTTGTACTAATCCCCATTC-
320 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGGA-TAGTCATACTAATCCCCATTCT
* * * * * **
1039962 TTTTTAGGATTAGGCTCCATAAACATTGTCTTTTAATAGGGATACGCGAT-TTGATGCTTTGGTT
384 TTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTT
* * * *
1040026 TTGTAAGAAAGGCTTTCTT-CCCCTA
449 TCGCAAGAAAGGCTTTTTTCCCCCCA
1040051 ATTTTT
1 ATTTTT
1040057 ATAGCCATCG
Statistics
Matches: 3144, Mismatches: 526, Indels: 238
0.80 0.13 0.06
Matches are distributed among these distances:
455 70 0.02
456 12 0.00
457 269 0.09
458 25 0.01
459 3 0.00
461 3 0.00
462 1 0.00
467 1 0.00
468 47 0.01
469 231 0.07
470 131 0.04
471 2 0.00
472 1 0.00
473 10 0.00
474 416 0.13
475 630 0.20
476 668 0.21
477 154 0.05
478 79 0.03
479 13 0.00
480 36 0.01
481 339 0.11
482 3 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (474 bp):
ATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTTT
CATTTTGTGATTAGGCACTATAAACACTTTCTCCTCATTAGGATAAATGATATTGATGATTTTCT
TTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTAAAATCAAAATTCATCCCTTAAATAAGACA
AGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACACATCCCGTTAT
TAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTTTGATAG
AATCAAAGTTTGTCTCTTAAATAAGACAAACATGGATAGTCATACTAATCCCCATTCTTTTTTAG
GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAG
AAAGGCTTTTTTCCCCCCA
Found at i:1039942 original size:475 final size:475
Alignment explanation
Indices: 1037215--1040056 Score: 3157
Period size: 475 Copynumber: 6.0 Consensus size: 475
1037205 AAAGCTTTCC
* * * **
1037215 CTAAATTCGTGACTCAAATGAGACAAACATAGATTCTAGTAATGATGC-TCATTCATTTTGTGAT
1 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGAT-CTTTGTTCATTTTGTGAT
* * * *
1037279 TGGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTAATGGTTTTCTTTTGGATGAAA
65 TAGACACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAA
* * * *
1037344 ATCTTTTCATTGCCCTATTTTCCTTAAAATCAAAATCCATCCCTTAGCTAAGACAAGCATCGATT
130 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCTTTAACTAAGACAAGCATCGATT
* * * * * *
1037409 C-CTGTAACGGTTTCCATTCTTTTTAAGAGTAGGAACTAAGAACACATTCCCTTTATTAGGATAC
195 CTC-GTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACACATT-CCGTTATTAGGATAC
* *
1037473 ATGACATT-ATTGTTTTGGTGTCACAAGAAATA-GTTTTCTTTCCACCATTTTTTATAGAATCAA
258 ATGACATTGA-TGCTTTGGTGTCGCAAGAAA-AGGTTTTCTTTCCACCATTTTTTATAGAATCAA
* * * * * * * *
1037536 AGCTTGTCTCTTAAATAAGACAAAAAAGAGAAGTCGTACTAATCACCAA-TCTTTTCCGAATTAC
321 AGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCATACTAATC-CCAATTCTTTTTCGGATTAG
* * * * * * * *
1037600 GAACCATAAACATAGCCTTCTTAAAAGGATACTCAATATTGATGCTTTGGTTTTGCAAGAAAGGC
385 GCACCATAAACATTGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGTAAGAAAGGC
* *
1037665 TTTTTTCCCCCCAATTTTTGTAGTGT
450 TTTCTTCCCCCCAATTTTTGTAGAGT
** * *
1037691 CTAAGTTCGCACCTCAAATGAGACAAACATGGATTCTAGTAACGATCTTTGTTCATTTAGTGATT
1 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTGTTCATTTTGTGATT
* * * * *
1037756 AGACACAATAAACA-ATTTCCCCTCATTTGGATAAATGATATTGATGATTTTCTTTTGCATGGAA
66 AGACACTATAAACACA-TTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAA
* * * *
1037820 ATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAATTCATCTTTTAAATAAGACAAACATCGATT
130 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCTTTAACTAAGACAAGCATCGATT
* * * * * * * *
1037885 CTCATAATAATCTCTATTCTTTCCAAGATTGGGAACCACGAACACATTCTCGTTATTAGGAAACA
195 CTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACACATTC-CGTTATTAGGATACA
* * *
1037950 TGACATTGATGCTTTGGTATCGCAAGAAAA-GTTTATTTTTCCACC-TTTTTTATCGAATCAAAG
259 TGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTT-TCTTTCCACCATTTTTTATAGAATCAAAG
* *
1038013 TTTG-CCCTTTAAATAAGACAAACATGAATAGTCATACTAATCTCC-ATTC-TTTTCAGGATTAG
323 TTTGTCTC-TTAAATAAGACAAACATGAGTAGTCATACTAATC-CCAATTCTTTTTC-GGATTAG
* * * * ** * * *
1038075 GCACCATAAACATAGTCTTTTTCATAAGGATACAGGATATTAACACTTTGGATATGCAAGAAAGG
385 GCACCATAAACATTGTC-TTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGTAAGAAAGG
* *
1038140 TTTTCTTCCCCCCAATTTTTGTAAAGT
449 CTTTCTTCCCCCCAATTTTTGTAGAGT
* * * *
1038167 CTATGTTCGTGCCGCAAAT--G----ACATGGATTCTAGTAATTATCTTTGTTCATTTTGTAATT
1 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTGTTCATTTTGTGATT
** * *
1038226 AGACACT-TAAACAGTTTCTACTCATTAGGATAAATGATATTGA-GGATTTTGTTTTGCATGAAA
66 AGACACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGG-TTTTCTTTTGCATGAAA
* * * * *
1038289 ATTTTTTCTTTGCCCAATTTTCTTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATC-AGT
130 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCTTTAACTAAGACAAGCATCGA-T
* * *
1038353 TCTCATAACAGTCTTCATTCTTTTCAAGATTGGGAACCAAGAACACATTCTCGTTATTAGGATGA
194 TCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACACATTC-CGTTATTAGGAT-A
* * * *
1038418 -ATGACATTGATGCTTTAGTGTTGCCAGAAAAGGTTTTCTTTCCACCATTTTTGATAGAATCAAA
257 CATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTTTTATAGAATCAAA
* *
1038482 GTTTGTCTCTTAAATAAGACAAACATGAGCAGTCATACTAATCCCCATTC-TTTTCAGGATTAGG
322 GTTTGTCTCTTAAATAAGACAAACATGAGTAGTCATACTAATCCCAATTCTTTTTC-GGATTAGG
* * *
1038546 CACCATAAATATTGTCTTCTCATAAGGATACACGATATTGATGCTTTGG-TTCGTAAGAATGGCT
386 CACCATAAACATTGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGTAAGAAAGGCT
*
1038610 TTCTTCCCCCCAATTTTTCTAGAGT
451 TTCTTCCCCCCAATTTTTGTAGAGT
*
1038635 CTATGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTGTTCATTTTGTGATT
1 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTGTTCATTTTGTGATT
** * * * * * *
1038700 AGACACTATAAACATTTTCCCCTCAGTAGGATAAATGATTTTTATGATTTT-TTTTGCATGGAAA
66 AGACACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAA
* * *
1038764 TCTTTTCTTTGCCCAATTTTCCATAAAATCAAAACTCATCCCTTTAA-TAAGACAAGCATCGATT
131 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCAT-CCTTTAACTAAGACAAGCATCGATT
* * * * *
1038828 CTCGTAGCAGTCTCTATTCTTTTCAAGATTGGGAACTAAGAACGCACTCCCGTTATTAGGATGCA
195 CTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACACA-TTCCGTTATTAGGATACA
* * * ** * * *
1038893 TGACATTGATGCTTTGGTGTCACAAGAAATGCTTTTAATTCCAACGTTTTTGATAGAATCAAAGT
259 TGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTTTTATAGAATCAAAGT
* * * ** * *
1038958 TTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCACTGTTCATTTTAGGATTAGGCAC
324 TTGTCTCTTAAATAAGACAAACATGAGTAGTCATACTAATCCCAATTCTTTTTCGGATTAGGCAC
* * * * * * *
1039023 CATAAACATTATCTT-TCCATAAAGATACTCGATATCGAAGCTTTGGTTTTGCAAGAAAGACTTT
389 CATAAACATTGTCTTCT-CATAAGGATACACGATATTGATGCTTTGGTTTTGTAAGAAAGGCTTT
*
1039087 CCTCCCCCCAATTTTTGTAGAGT
453 CTTCCCCCCAATTTTTGTAGAGT
* * ** * * **
1039110 TTAAGTTTGTGCCTCTGATGAGACAACCTTGGATTCTAGTAATGATC-TTGTTTGTTTTGTGATT
1 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTGTTCATTTTGTGATT
** * * ** *
1039174 AGACA-TAATAAACATGTTCTCCTCATTAGAATAAATGATATTGATGATTTTCTTTTGTGTGGAA
66 AGACACT-ATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAA
** * * * * *
1039238 ATCTTTTCTTCACCTTATTTTCCTTAAAGTCAAAATTTATCCCTTCAAC-AAGATGGATA-CATA
130 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCAT-CCTTTAACTAAGA--CA-AGCAT-
* * * * * *
1039301 AACATATTCTAGTAACAATCTCTATTATTTTCAAGATTGGGAACTATA-AACATATTCCCGTTAT
190 --C-GATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACTA-AGAACACATT-CCGTTAT
* * * * * *
1039365 TAGGATACATAACGTTGATGCTTTTGTGTCGCAAGAAAAGGTTTGCCTTCCACCTTTTTTTATAG
250 TAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTTTTATAG
* * * *
1039430 AATCAAAGTTTATCTCTTAAAAAAGACAAACATGAGTAATCGTACTAATCCCAATTCTTTTTCGG
315 AATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCATACTAATCCCAATTCTTTTTCGG
* * * * * **
1039495 ATTAGGCTCCATGAACATTGTCTTCTCACAAGGATACAAGATATTGATGTTTTGGTTTCATAAGA
380 ATTAGGCACCATAAACATTGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGTAAGA
* * * *
1039560 AAGGATTTATTCCCCTCAA-CTTTGATAGAGT
445 AAGGCTTTCTTCCCCCCAATTTTTG-TAGAGT
* * **
1039591 CTAAGTTCGAGCCTCAAA-GAGACAAACATGGATTCTGGTAATGATCTTTGTTCACCTTGTGATT
1 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTGTTCATTTTGTGATT
* * *
1039655 AGACATTATAAACACATTCTCCTCATTAAGATAAATGATATTGATGGTTTTTTTTTGCATGAAAA
66 AGACACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAA
*
1039720 TATTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCTTTAACTAAGACAAGCATCGATTC
131 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCTTTAACTAAGACAAGCATCGATTC
* *
1039785 TTGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGC-AA-AAGCACATTCCATTCATTAGGATAC
196 TCGTAACAGTCTCCATTCTTTTCAAGATTGGGAA-CTAAGAA-CACATTCCGTT-ATTAGGATAC
* * *
1039848 ATGAGATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCCTTCCACCATTTTTTATAGTATCAAAG
258 ATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTTTTATAGAATCAAAG
* * ** * * *
1039913 TTTGTCTCTTAAAAAACACAAACATGAGTAGTTGTACTAATCCCCATTCTTTTTAGGATTAGGCT
323 TTTGTCTCTTAAATAAGACAAACATGAGTAGTCATACTAATCCCAATTCTTTTTCGGATTAGGCA
* * * *
1039978 CCATAAACATTGTCTTTTAATAGGGATACGCGAT-TTGATGCTTTGGTTTTGTAAGAAAGGCTTT
388 CCATAAACATTGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGTAAGAAAGGCTTT
*
1040042 CTT-CCCCTAATTTTT
453 CTTCCCCCCAATTTTT
1040057 ATAGCCATCG
Statistics
Matches: 1991, Mismatches: 320, Indels: 112
0.82 0.13 0.05
Matches are distributed among these distances:
468 53 0.03
469 225 0.11
470 131 0.07
471 2 0.00
473 7 0.00
474 409 0.21
475 449 0.23
476 321 0.16
477 6 0.00
478 2 0.00
479 4 0.00
480 38 0.02
481 341 0.17
482 3 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (475 bp):
CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTGTTCATTTTGTGATT
AGACACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAA
TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCTTTAACTAAGACAAGCATCGATTC
TCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACACATTCCGTTATTAGGATACATG
ACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTT
GTCTCTTAAATAAGACAAACATGAGTAGTCATACTAATCCCAATTCTTTTTCGGATTAGGCACCA
TAAACATTGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGTAAGAAAGGCTTTCTT
CCCCCCAATTTTTGTAGAGT
Found at i:1041068 original size:642 final size:643
Alignment explanation
Indices: 1039414--1041351 Score: 2400
Period size: 642 Copynumber: 3.0 Consensus size: 643
1039404 GGTTTGCCTT
* ** * * *
1039414 CCACCTTTTTTTATAGAATCAAAGTTTATCTCTTAAAAAAGACAAACATGAGTAATCGTACTAAT
1 CCACCGTTTTTTATAGAATCAAAGTTTATCTCTTAAGTAAGACAAACATGAATAGTCATACTAAT
* * * * * *
1039479 CCCAATTCTTTTTCGGATTAGGCTCCATGAACATTGTCTTCTCACAAGGATACAAGATATTGATG
66 CCCAATTCTTTTTAGGATTAGGCACCATAAACATTGTCTT-T-TC-A--ATA-AAGCTATTGACG
* ** * * * * *
1039544 TTTTGGTTTCATAAGAAAGGATTTATT-CCCCTCAA-CTTTGATAGAGTCTAAGTTCGAGCCTCA
125 ATTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCT-AATTTTTG-TAGAGTCTAAGTTCGTGCCACA
* * * * *
1039607 AA-GAGACAAACATGGATTCTGGTAATGATCTTTGTTCACCTTGTGATTAGACATTATAAACACA
188 AATGAGACAAACATGGATTCTAGTAATGATCTTTATTCACTTTGTGATTAGGCACTATAAACACA
* *
1039671 TTCTCCTCATTAAGATAAATGATATTGATGGTTTTTTTTTGCATGAAAATATTT-TCTTTGCCCT
253 TTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATATTTCT-TTTGCCCT
* * *
1039735 ATTTTCCTTAAAATCAAAATTCATCCTTTAACTAAGACAAGCATCGATTCTTGTAACAGTCTCCA
317 ATTTTTCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATCGATTCTTGTAACAGTCTCCA
*
1039800 TTCTTTTCAAGATTGGGAAGCAAAAGCACATTCCATTCATTAGGATACATGAGATTGATGCTTTG
382 TTCTTTTCAAGATTGGGAAGCAAAAG-ACATTCCATTCATTAGGATACATGACATTGATGCTTTG
* * * * * *
1039865 GTGTCGCAAGAAAAGGTTTTCCTTCCACCATTTTTTATAGTATCAAAGTTTGTCTCTTAAAAAAC
446 GTGTCGCAAGGAAAGGTTTTCCTTCCACCGTTTTTAATAGAATCAAAGTTTGTCTCTTAAATAAG
*
1039930 ACAAACATGAGTAGTTGTACTAATCCCCATTCTTTTTAGGATTAGGCTCCATAAACATTGTCTTT
511 ACAAACATGAGTAGTTGAACTAATCCCCATTCTTTTTAGGATTAGGCTCCATAAACATTGTCTTT
* * *
1039995 TAATAGGGATACGCGAT-TTGATGCTTTGGTTTTGTAAGAAAGGCTTTCTT-CCCCTAATTTTTA
576 TAATAGGGATACACGATATTGATGCTTTGGTTTTCTAAGAAAGGCTTTCTTCCCCCTAATTTTTG
1040058 TAG
641 TAG
* * * * *
1040061 CCATCGTTTTTGATAGAATCAAAATTTATCTCTTAAGTAAGATAATCATGAATAGTCATACTAAT
1 CCACCGTTTTTTATAGAATCAAAGTTTATCTCTTAAGTAAGACAAACATGAATAGTCATACTAAT
* *
1040126 CCCCATTCTTTTTAGGATTAGGCACAATAAACATTGTCTTTTCATAAAGATACAAGCTATTGACG
66 CCCAATTCTTTTTAGGATTAGGCACCATAAACATTGTCTTTTC----A-ATA-AAGCTATTGACG
* * * * * * *
1040191 CTTTGGTTTCGCAAGAAAGGCTTTCTTTCCCCC-AATTTTTATAAACTCTAAGTTCATACCAGAA
125 ATTTGGTTTCGCAAGAAAGGCTTTC-TTCCCCCTAATTTTTGTAGAGTCTAAGTTCGTGCCACAA
* * *
1040255 ATGAGACAAACATGGATTAC-AGTAATGATCTTTATTCACTTAGAGATTAGGCGCTATAAACACA
189 ATGAGACAAACATGGATT-CTAGTAATGATCTTTATTCACTTTGTGATTAGGCACTATAAACACA
* * *
1040319 TTCTCCTCTTTAGGAGATATGATATTGATGGTTTTCTTTTGCATGAAAATTATTTC-TTTGCCCT
253 TTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAA-TATTTCTTTTGCCCT
* * * *
1040383 ATTTTTCATAAAATCAAAATTCATCCCTTATATAAAACAAGCATCGATTCTTGGAACAGTCTCCA
317 ATTTTTCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATCGATTCTTGTAACAGTCTCCA
* * * * *
1040448 TGCTTTTAAAGATTGGGAAGCAAAATGACATTTCATTCATTGGGATAGATGACATTGATGCTTTG
382 TTCTTTTCAAGATTGGGAAGCAAAA-GACATTCCATTCATTAGGATACATGACATTGATGCTTTG
* * * * *
1040513 GGGTTGCAAGGAAAGGTTTTCCTTCCAGCGTTTTGAATAGAATCAAAGTTTGTCTTTTAAATAAG
446 GTGTCGCAAGGAAAGGTTTTCCTTCCACCGTTTTTAATAGAATCAAAGTTTGTCTCTTAAATAAG
* *
1040578 ACAAACATGAGTGGTTGAACTAATCCCCATTCTTTTTAGGATTAGGCTCCATAAACATTGTCTTG
511 ACAAACATGAGTAGTTGAACTAATCCCCATTCTTTTTAGGATTAGGCTCCATAAACATTGTCTTT
* ** *
1040643 TAATCGGGATACACGATATTGATGCTTTCATTTTCTAA-AACAGGCTTTCTTCCCCCCAATTTTT
576 TAATAGGGATACACGATATTGATGCTTTGGTTTTCTAAGAA-AGGCTTTCTTCCCCCTAATTTTT
*
1040707 GTGG
640 GTAG
* * * *
1040711 CCACCGTTTTTTATGGAATCAAAGTTTGTCTCTTAAGTACGACAAACAAGAATAGTCATACTAAT
1 CCACCGTTTTTTATAGAATCAAAGTTTATCTCTTAAGTAAGACAAACATGAATAGTCATACTAAT
* * *
1040776 CCCTATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTTTC-AT-AAGCTATTGACAATTTGG
66 CCCAATTCTTTTTAGGATTAGGCACCATAAACATTGTCTTTTCAATAAAGCTATTGACGATTTGG
1040839 TTTCGCAAGAAAGGCTTTCTTCCCCCTAATTTTTGTAGAGTCTAAGTTCGTGCCACAAATGAGAC
131 TTTCGCAAGAAAGGCTTTCTTCCCCCTAATTTTTGTAGAGTCTAAGTTCGTGCCACAAATGAGAC
* * * *
1040904 AAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGGTTAGGCACTATAAACACATTTTCCTC
196 AAACATGGATTCTAGTAATGATCTTTATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTC
* * *
1040969 ATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTCTTTTGCCCTATTTTTCTT
261 ATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATATTTCTTTTGCCCTATTTTTCTT
* * * *
1041034 AAAATGAAAATTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCTATTCTTTTCA
326 AAAATCAAAATTCATCCCTTAAATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCA
* * * *
1041099 AGATTGGGAACCAAGAACACATTCCCGTT-ATTTGGATACATGACATTGATGCTTTGGTGTCGCA
391 AGATTGGGAAGCAA-AAGACATT-CCATTCATTAGGATACATGACATTGATGCTTTGGTGTCGCA
*** ** * *
1041163 A-GAATTATTGTTATTTCCACCGTTTTTAATAGACA-CAAAGTTTTTCTCTTAAAT-AGAATAAA
454 AGGAAAGGTT-TTCCTTCCACCGTTTTTAATAGA-ATCAAAGTTTGTCTCTTAAATAAG-ACAAA
* * * * * * * * *
1041225 CATTAATAG-TCATACTAATCCCCATTCATTTTAGTATTAGGCACCATAAAGATAGTCTTTTCAT
516 CATGAGTAGTTGA-ACTAATCCCCATTCTTTTTAGGATTAGGCTCCATAAACATTGTCTTTTAAT
* *
1041289 AAGGATACTCGATATTGATGCTTTGGTTTTGC-AAGAAAGGCTTTCTTCCCCCTAATTTTTGTA
580 AGGGATACACGATATTGATGCTTTGGTTTT-CTAAGAAAGGCTTTCTTCCCCCTAATTTTTGTA
1041352 AAGTCAAAGT
Statistics
Matches: 1106, Mismatches: 160, Indels: 55
0.84 0.12 0.04
Matches are distributed among these distances:
641 22 0.02
642 422 0.38
643 9 0.01
644 2 0.00
645 1 0.00
646 1 0.00
647 143 0.13
648 359 0.32
649 38 0.03
650 109 0.10
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.37
Consensus pattern (643 bp):
CCACCGTTTTTTATAGAATCAAAGTTTATCTCTTAAGTAAGACAAACATGAATAGTCATACTAAT
CCCAATTCTTTTTAGGATTAGGCACCATAAACATTGTCTTTTCAATAAAGCTATTGACGATTTGG
TTTCGCAAGAAAGGCTTTCTTCCCCCTAATTTTTGTAGAGTCTAAGTTCGTGCCACAAATGAGAC
AAACATGGATTCTAGTAATGATCTTTATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTC
ATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATATTTCTTTTGCCCTATTTTTCTT
AAAATCAAAATTCATCCCTTAAATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCA
AGATTGGGAAGCAAAAGACATTCCATTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAG
GAAAGGTTTTCCTTCCACCGTTTTTAATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGA
GTAGTTGAACTAATCCCCATTCTTTTTAGGATTAGGCTCCATAAACATTGTCTTTTAATAGGGAT
ACACGATATTGATGCTTTGGTTTTCTAAGAAAGGCTTTCTTCCCCCTAATTTTTGTAG
Found at i:1041400 original size:476 final size:473
Alignment explanation
Indices: 1040711--1041826 Score: 1418
Period size: 476 Copynumber: 2.4 Consensus size: 473
1040701 ATTTTTGTGG
* * * * *
1040711 CCACCGTTTTTTATGGAATCAAAGTTTGTCTCTTAAGTACG-ACAAACAAGAATAGTCATACTAA
1 CCACCGTTTTTAATAGAATCAAAGTTTGTCTCTTAAATA-GAATAAACATGAATAGTCATACTAA
* *
1040775 TCCCTATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTTTCATAA-G----C--TATTGACA
65 TCCCCATTCTTTTTAGAATTAGGCACCATAAACATAGTCTTTTCATAAGGATACCGATATTGA-A
* * *
1040833 -ATTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCTAATTTTTGTAGAGTCTAAGTTCGTGCCACAA
129 GCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCTAATTTTTGTAAAGTCAAAGTTCGTGCCACAA
* * * * *
1040897 ATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGGTTAGGCACTATAAACACAT
194 ATGAGACAAACATGGATTCTAGTAATGATCTTCATTAATTTAGAGATTAGGCAATATAAACACAT
* * *
1040962 TTTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATC-TTTCTTTTGCCCTA
259 TCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCATTTC-TTTGCCCAA
* * ** * *
1041026 TTTTTCTTAAAATGAAAATTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCTAT
323 TTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATCGATTCTCAAAACAGTCTCCAT
* * *
1041091 TCTTTTCAAGATTGGGAACCAAGAA-CACATTCCCGTTATTT-GGATACATGACATTGATGCTTT
388 GCTTTTCAAGATT-GGAACCAA-AAGCACATT-CCATTATTTAGGATACATGACATTGATGCCTT
* * *
1041154 GGTGTCGCA-AGAATTATTGTTATTT
450 GGAGTCGCAGAGAA-GATT-TTACTT
* *
1041179 CCACCGTTTTTAATAGACA-CAAAGTTTTTCTCTTAAATAGAATAAACATTAATAGTCATACTAA
1 CCACCGTTTTTAATAGA-ATCAAAGTTTGTCTCTTAAATAGAATAAACATGAATAGTCATACTAA
* * * *
1041243 TCCCCATTCATTTTAGTATTAGGCACCATAAAGATAGTCTTTTCATAAGGATACTCGATATTGAT
65 TCCCCATTCTTTTTAGAATTAGGCACCATAAACATAGTCTTTTCATAAGGATAC-CGATATTGAA
* *
1041308 GCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCCCTAATTTTTGTAAAGTCAAAGTTCGTGCCTCAA
129 GCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCTAATTTTTGTAAAGTCAAAGTTCGTGCCACAA
* *
1041373 ATGAGACAAACATGGATTCTAGTAATGATCTTCATTAATTTAGAGATTTGGCAATATAAACATAT
194 ATGAGACAAACATGGATTCTAGTAATGATCTTCATTAATTTAGAGATTAGGCAATATAAACACAT
* *
1041438 TCTCCTCTTTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCATTTCTTTGCCCAAT
259 TCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCATTTCTTTGCCCAAT
* ** *
1041503 TTTCCTTAAAATCAAGATTCATCCCTTATTTAAGGCAAGCATCGATTCTCAAAACAGTCTCCATG
324 TTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATCGATTCTCAAAACAGTCTCCATG
* * *
1041568 CTTTTCAAGATTGGAAGCAAAAGCACATTCTATTCTTTAGGATACATGACATTGATGCCTTGGAG
389 CTTTTCAAGATTGGAACCAAAAGCACATTCCATTATTTAGGATACATGACATTGATGCCTTGGAG
* *
1041633 TCGCAGGAGAAGGTTTTCCTT
454 TCGCA-GAGAAGATTTTACTT
* * * * *
1041654 CCACCCTTTTTGATAGAATCAAAATTTGTCTCTTAAATA-AGATAAACATGAGTAGTCAAACTAA
1 CCACCGTTTTTAATAGAATCAAAGTTTGTCTCTTAAATAGA-ATAAACATGAATAGTCATACTAA
* * * * *
1041718 TCCCCATTCTTTTCTA-AATTAGGCTCCATAAACATTGTCTTCTAATAGGGATACACGATATTGA
65 TCCCCATTCTTTT-TAGAATTAGGCACCATAAACATAGTCTTTTCATAAGGATAC-CGATATTGA
* * *
1041782 AGCTTTGGTTTCGTAAGAAAGGCTCTCTTCCCCCCAATTTTTGTA
128 AGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCTAATTTTTGTA
1041827 GCCACCATTT
Statistics
Matches: 558, Mismatches: 71, Indels: 31
0.85 0.11 0.05
Matches are distributed among these distances:
467 1 0.00
468 97 0.17
469 2 0.00
474 11 0.02
475 191 0.34
476 248 0.44
477 8 0.01
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (473 bp):
CCACCGTTTTTAATAGAATCAAAGTTTGTCTCTTAAATAGAATAAACATGAATAGTCATACTAAT
CCCCATTCTTTTTAGAATTAGGCACCATAAACATAGTCTTTTCATAAGGATACCGATATTGAAGC
TTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCTAATTTTTGTAAAGTCAAAGTTCGTGCCACAAAT
GAGACAAACATGGATTCTAGTAATGATCTTCATTAATTTAGAGATTAGGCAATATAAACACATTC
TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCATTTCTTTGCCCAATTT
TCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATCGATTCTCAAAACAGTCTCCATGCT
TTTCAAGATTGGAACCAAAAGCACATTCCATTATTTAGGATACATGACATTGATGCCTTGGAGTC
GCAGAGAAGATTTTACTT
Found at i:1041964 original size:174 final size:174
Alignment explanation
Indices: 1041654--1042001 Score: 448
Period size: 174 Copynumber: 2.0 Consensus size: 174
1041644 GGTTTTCCTT
* * *
1041654 CCACCCTTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGATAAACATGAGTAGTCAAACTAAT
1 CCACCATTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGACAAACATGAATAGTCAAACTAAT
* ** ** * *
1041719 CCCCATTCTTTTCTAAATTAGGCTCCATAAACATTGTCTTCTAATAGGGATACACGATATTGAAG
66 CCCCATTCTTTTCTAAATTAGGCACCATAAACACAGTCTTCTAATAACGATACAAGATATTGAAA
* *
1041784 CTTTGGTTTCGTAAGAAAGGCTCTCTTCCCCCCAATTTTTGTAG
131 CTTTGGTTTCGCAAGAAAGGCTCTCTTCCCCCCAATTTTGGTAG
* * * * *
1041828 CCACCATTTTTTATGGAATCAAAGTTTGTCTCTTAAGTAAGACAAACATGAATAGTCATACTAAT
1 CCACCATTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGACAAACATGAATAGTCAAACTAAT
* * * *
1041893 CCCCATTCTTTT-TAGGATTAGGCACCATAAACACAGTCTTTTCATAACGATACAAGCTATT-AA
66 CCCCATTCTTTTCTA-AATTAGGCACCATAAACACAGTCTTCTAATAACGATACAAGATATTGAA
* * *
1041956 CACTTTGGTTTTGCAAGAGAGGCTTTCTTCCCCCCAATTTTGGTAG
130 -ACTTTGGTTTCGCAAGAAAGGCTCTCTTCCCCCCAATTTTGGTAG
1042002 AGTCTAAGTT
Statistics
Matches: 148, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
173 4 0.03
174 144 0.97
ACGTcount: A:0.31, C:0.21, G:0.14, T:0.34
Consensus pattern (174 bp):
CCACCATTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGACAAACATGAATAGTCAAACTAAT
CCCCATTCTTTTCTAAATTAGGCACCATAAACACAGTCTTCTAATAACGATACAAGATATTGAAA
CTTTGGTTTCGCAAGAAAGGCTCTCTTCCCCCCAATTTTGGTAG
Found at i:1043377 original size:20 final size:20
Alignment explanation
Indices: 1043352--1043405 Score: 83
Period size: 20 Copynumber: 2.7 Consensus size: 20
1043342 GTTGTAAGCA
1043352 ATGTATCGATACAAT-TCAT
1 ATGTATCGATACAATGTCAT
*
1043371 CATGTATCGATACAATGTCCT
1 -ATGTATCGATACAATGTCAT
1043392 ATGTATCGATACAA
1 ATGTATCGATACAA
1043406 ATAGTGGTAG
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 29 0.91
21 3 0.09
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.33
Consensus pattern (20 bp):
ATGTATCGATACAATGTCAT
Found at i:1043491 original size:13 final size:13
Alignment explanation
Indices: 1043473--1043500 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
1043463 ATACAATGAA
1043473 AATGTATCGATAC
1 AATGTATCGATAC
1043486 AATGTATCGATAC
1 AATGTATCGATAC
1043499 AA
1 AA
1043501 AGCATAATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:1044104 original size:31 final size:31
Alignment explanation
Indices: 1044067--1044125 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
1044057 ATTGATTAAC
1044067 GAGATTTTCTCATCCTAGATAAACATATAAT
1 GAGATTTTCTCATCCTAGATAAACATATAAT
1044098 GAGATTTTCTCATCCTAGATAAACATAT
1 GAGATTTTCTCATCCTAGATAAACATAT
1044126 TTTTCCCCCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.37, C:0.17, G:0.10, T:0.36
Consensus pattern (31 bp):
GAGATTTTCTCATCCTAGATAAACATATAAT
Found at i:1044150 original size:22 final size:22
Alignment explanation
Indices: 1044124--1044165 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
1044114 AGATAAACAT
1044124 ATTTTTCCCCCTTTATCAAAGC
1 ATTTTTCCCCCTTTATCAAAGC
* *
1044146 ATTTTTCCCTCTTTGTCAAA
1 ATTTTTCCCCCTTTATCAAA
1044166 TCAAAAAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.21, C:0.29, G:0.05, T:0.45
Consensus pattern (22 bp):
ATTTTTCCCCCTTTATCAAAGC
Found at i:1052175 original size:33 final size:33
Alignment explanation
Indices: 1052138--1052200 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
1052128 CCGTTATAAG
*
1052138 CAATGTATCGATATAAT-TCATCATGTATCGATC
1 CAATGTATCGATACAATGTCAT-ATGTATCGATC
* *
1052171 CAATGTATTGATACAATGTCCTATGTATCG
1 CAATGTATCGATACAATGTCATATGTATCG
1052201 TACAAATAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
33 23 0.88
34 3 0.12
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (33 bp):
CAATGTATCGATACAATGTCATATGTATCGATC
Found at i:1052273 original size:13 final size:13
Alignment explanation
Indices: 1052255--1052281 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1052245 ACAATTGTCC
1052255 ATGTATCGATACA
1 ATGTATCGATACA
1052268 ATGTATCGATACA
1 ATGTATCGATACA
1052281 A
1 A
1052282 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1054264 original size:469 final size:473
Alignment explanation
Indices: 1053533--1054387 Score: 1314
Period size: 469 Copynumber: 1.8 Consensus size: 473
1053523 GCATGAAAAG
* * *
1053533 GTTTTCTTTCCACCGTTTCTGATAGAATCAAAGTTTGTCTCTTAAGTAAGACAAACAAGAATAGT
1 GTTTTCTTTCCACCGTTTCTGATAAAATCAAAGTTTGTCTCTGAAATAAGACAAACAAGAATAGT
*
1053598 CATACTAATCCCCATTCTTTTTACGATTAGGCACCATAAACATAGTCTTTCATAAGAATACAAGA
66 CATACTAATCCCCATTCTTTTTACGATTAGGCACCAT-AACATACTCTTTCATAAGAATACAAGA
* * * * *
1053663 TATTGTTGCTTTGGCATCGCAAGAAAGGCTTTCTTCCCCTCAATTTTTGTAGAGTCTATGTTCAT
130 TATTGATGCTTTGGCATCGCAAGAAAGGCTTCCTTCCACTCAATTTTTGTAGAGTCTAAGTTCAC
* * *
1053728 GCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGAGATTAGGCACTATA
195 GCCTAAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTCAGATTACGCACTATA
* *
1053793 AACATATTCTCCTCTTCAAGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCATTTTTTT
260 AACACATTCTCCTCTTCAAGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCATTTCTTT
* * * *
1053858 GCCCTATTT-TCCTTAAAATCAAAATTCATCCCATATCTAAGATAAGCATCGATTCTCGTAATAG
325 GCCCTATTTCT-CTTAAAATCAAAATTCATCCCATATCTAAGACAAACAGCAATTCTCGTAATAG
1053922 TCTCTATTTTTTTCAATATTGGGATCCAAGAACACATTTTCGTTATTCGTGTACATGTCATTCAT
389 TCTCTATTTTTTTCAATATTGGGATCCAAGAACACATTTTCGTTATTCGTGTACATGTCATTCAT
1053987 GCTTTGGGGTAGCAAGAATT
454 GCTTTGGGGTAGCAAGAATT
1054007 GTTTT-TTTCCCACCGTTTCTGA-AAATATCAAAGTTTGTCAT-TGAAATAAGACAAA-AATGAA
1 GTTTTCTTT-CCACCGTTTCTGATAAA-ATCAAAGTTTGTC-TCTGAAATAAGACAAACAA-GAA
* * *
1054068 TAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCAT-A-AT-CT-TTTCATATGGATACA
62 TAGTCATACTAATCCCCATTCTTTTTACGATTAGGCACCATAACATACTCTTTCATAAGAATACA
**
1054129 AGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTCCTTCCACTCAATTTTTGTAGAGTCTAAGTT
127 AGATATTGATGCTTTGGCATCGCAAGAAAGGCTTCCTTCCACTCAATTTTTGTAGAGTCTAAGTT
* *
1054194 CGCGCCTAAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTCTGATTACGCACT
192 CACGCCTAAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTCAGATTACGCACT
* * * *
1054259 ATAAACACATTTTCCTCTTTAGGATAAATGATATTGATGGTTTTCTTTTGTATGAAAATCATTTC
257 ATAAACACATTCTCCTCTTCAAGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCATTTC
* *
1054324 TTTGCCCTATTTCTCTTAAATTCAAAATTCATCCCTTATCTAAGACAAACAGCAATTCTCGTAA
322 TTTGCCCTATTTCTCTTAAAATCAAAATTCATCCCATATCTAAGACAAACAGCAATTCTCGTAA
1054388 CAATCTCCAA
Statistics
Matches: 345, Mismatches: 31, Indels: 15
0.88 0.08 0.04
Matches are distributed among these distances:
469 246 0.71
470 2 0.01
471 2 0.01
472 1 0.00
473 7 0.02
474 86 0.25
475 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (473 bp):
GTTTTCTTTCCACCGTTTCTGATAAAATCAAAGTTTGTCTCTGAAATAAGACAAACAAGAATAGT
CATACTAATCCCCATTCTTTTTACGATTAGGCACCATAACATACTCTTTCATAAGAATACAAGAT
ATTGATGCTTTGGCATCGCAAGAAAGGCTTCCTTCCACTCAATTTTTGTAGAGTCTAAGTTCACG
CCTAAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTCAGATTACGCACTATAA
ACACATTCTCCTCTTCAAGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCATTTCTTTG
CCCTATTTCTCTTAAAATCAAAATTCATCCCATATCTAAGACAAACAGCAATTCTCGTAATAGTC
TCTATTTTTTTCAATATTGGGATCCAAGAACACATTTTCGTTATTCGTGTACATGTCATTCATGC
TTTGGGGTAGCAAGAATT
Found at i:1054648 original size:229 final size:229
Alignment explanation
Indices: 1054230--1054676 Score: 592
Period size: 229 Copynumber: 2.0 Consensus size: 229
1054220 TTCTAGTAAT
* *
1054230 GATCTTCATTCATTTTCTGATTACGCACTATAAACACATTTTCCTCTTTAGGATAAATGATATTG
1 GATCTTCATTCATTTTCTGATTACGCACTATAAACACATTATCCTCTTTAAGATAAATGATATTG
* * *
1054295 ATGGTTTTCTTTTGTATGAAAATCATTTCTTTGCCCTATTTCTCTTAAATTCAAAATTCATCCCT
66 ATGGTTTTCTTTTGTAAGAAAATCATTTCTTTGCCCTATTTCTCTTAAAATCAAAATTCATCCCG
** * *
1054360 TATCTAAGACAAACAGCAATTCTCGTAACAATCTCCAATCTTTCCAAGATTGAGAAGCAAAAGCA
131 TATAAAAAACAAACAGCAATTCTCGCAACAATCTCCAATCTTTCCAAGATTGAGAAGCAAAAGCA
1054425 CATTCCCTTCATTAGGATACATGGCACTGATAAA
196 CATTCCCTTCATTAGGATACATGGCACTGATAAA
* * * ** *
1054459 GATCTTCATTCATTTTGTGGTTAGGCACTATAAACATGTTATCCTTTTTAAGATAAATGATATTG
1 GATCTTCATTCATTTTCTGATTACGCACTATAAACACATTATCCTCTTTAAGATAAATGATATTG
* * * *
1054524 ATGGTTTTCTTTTGTAAGGAAATCTTTTCTTTGCCCT-TTTTTCCTTAAAATCAAAATTCATCGC
66 ATGGTTTTCTTTTGTAAGAAAATCATTTCTTTGCCCTATTTCT-CTTAAAATCAAAATTCATCCC
* * * * ** * * *
1054588 GTA-AAAACAACAAGCATCGATTCTCGCAACAGTCTCCTTTCTTTTCAGGATTGGGAAGCAAAAG
130 GTATAAAA-AACAAACAGCAATTCTCGCAACAATCTCCAATCTTTCCAAGATTGAGAAGCAAAAG
* *
1054652 CATATTGCCTTCATTAGGATACATG
194 CACATTCCCTTCATTAGGATACATG
1054677 AGATTGATTC
Statistics
Matches: 186, Mismatches: 30, Indels: 4
0.85 0.14 0.02
Matches are distributed among these distances:
228 6 0.03
229 180 0.97
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.37
Consensus pattern (229 bp):
GATCTTCATTCATTTTCTGATTACGCACTATAAACACATTATCCTCTTTAAGATAAATGATATTG
ATGGTTTTCTTTTGTAAGAAAATCATTTCTTTGCCCTATTTCTCTTAAAATCAAAATTCATCCCG
TATAAAAAACAAACAGCAATTCTCGCAACAATCTCCAATCTTTCCAAGATTGAGAAGCAAAAGCA
CATTCCCTTCATTAGGATACATGGCACTGATAAA
Found at i:1055437 original size:446 final size:447
Alignment explanation
Indices: 1054597--1058035 Score: 2056
Period size: 475 Copynumber: 7.3 Consensus size: 447
1054587 CGTAAAAACA
* * * * * *
1054597 ACAAGCATCGATTCTCGCAACAGTCTCCTTTCTTTTCAGGATTGGGAAGCAAAAGCATATTGCCT
1 ACAAGCATCGATTCTCGTAAAAGTCTCTTTTCTTTTCAAGATTGGGAAGCAAAAGCACATTCCCT
* * * * *
1054662 TCATTAGGATACATGAGATTGATTCTTTGGTGTCACAAGAAAAGGTTTTCTTTCCACCGTTTCTA
66 TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTG
*
1054727 ATAGAATCAAAGTTTGTCTCTTAAGTAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTT
131 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTT
* * * *
1054792 TACGATTAGGTACCATAAACATAGTCTTTCATAAGAATACAAGATGTTGATGCTTTGGTTTTGCA
196 CAGGATTAGGCACCATAAACATAGTCTTTC-TAAG-ATACAAGATATTGATGCTTTGGTTTTGCA
* * * * *
1054857 AGAAAGGCTTTCTTCCGCTCAATTTTTGTAGAGTCTATGTCCATGCCACAAATGAGACAAACATG
259 AGAAAGGCTTTCTTCCCCCCAATTTTTGTAGAGTCTAAGTTCGTGCC-CAAATGAGACAAACATG
** * * *
1054922 GATTCTAGTAATGATCTTCATTCATTTTGAGATTAGGCACTATAAACATATTCTCCTC-TTCAAG
323 GATTCTAGTAATGATCTTTGTTCATTTTGTGATTAGACACTATAAACAT-TTCTCCTCATT-AGG
1054986 ATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCATTTTTTTGC-C-A-T-A-TC-TAAG
386 ATAAATGATATTGATGGTTTTCTTTTGCATGAAAATC-TTTTTTTGCACAATTCATTCATAAG
** * *
1055043 GTAAGCATCGATTCTTGTAAAAGTCTCTTTTCTTTTCAAGATTAGGAAGCAAAAGCACATTCCCT
1 ACAAGCATCGATTCTCGTAAAAGTCTCTTTTCTTTTCAAGATTGGGAAGCAAAAGCACATTCCCT
*
1055108 TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCCTTCCACCGTTTTTG
66 TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTG
* * *
1055173 ATAGAATCAAAGTCTGTCTCTTAAATAAGACAAACATGAGTAGTCATACTAATCCCCGTTCTTTT
131 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTT
* * *
1055238 CAGGATTAGGCACCATAAACATAGTCTTCTCGTAACGATACATGATATTGATGCTTTGGTTTCGT
196 CAGGATTAGGCACCATAAACATAGTCTT-TC-TAA-GATACAAGATATTGATGCTTTGGTTTTGC
* * * *
1055303 AGGAAATGCTTTCTGCCCCCCAATTTTT-TAGAGTCTAAGTTCGTGCCTCAAATAAGACAAACAT
258 AAGAAAGGCTTTCTTCCCCCCAATTTTTGTAGAGTCTAAGTTCGTGCC-CAAATGAGACAAACAT
* * * * *
1055367 GGATCCTAGTAGTGATCTTTGTTCATTTCGTTATTAGATACTATAAACAGTTTCTCCTCATTAGG
322 GGATTCTAGTAATGATCTTTGTTCATTTTGTGATTAGACACTATAAACA-TTTCTCCTCATTAGG
* *
1055432 ATAAATGATAATGATGATTTTCTTTTGCATTG-AAATCTTTTCTTTGCCCTATTTTCCATAAAAT
386 ATAAATGATATTGATGGTTTTCTTTTGCA-TGAAAATCTTTT-TTTG----------C-----A-
1055496 CAAAATTCATCCTTTCAATAAG
433 C--AATTCA----TTC-ATAAG
* * *
1055518 ACAAGCATCGATTCTCGTAACAA-TCTCTATTCTTTTCAAGATTGGGAACCAAAAACACATTCTC
1 ACAAGCATCGATTCTCGTAA-AAGTCTCTTTTCTTTTCAAGATTGGGAAGCAAAAGCACATTC-C
* * * * * * * * *
1055582 GTT-GTTAGGATACATGATATTAATGCTTTGGTGTTGTAAGAAAAGCTTTTATTTCCTCCGTTTT
64 CTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTT
** * **
1055646 TGATAGGGTCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATAGTCGCACTAATCCCCATTCTT
129 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTT
* * *
1055711 TTCAGGATTAGGCACCATAAACATAGTCTTTTACCAAGGATACAAGATAATGACGCTTTGGTTTT
194 TTCAGGATTAGGCACCATAAACATAGTC-TTT-CTAA-GATACAAGATATTGATGCTTTGGTTTT
*
1055776 GCAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAGAGTCAAAGTTCGTG-CC-AATGAGACAAACA
256 GCAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAGAGTCTAAGTTCGTGCCCAAATGAGACAAACA
* * *
1055839 TAGATTCTAGTAATGATCTTTGTTCGTTTTGTGATTTGACACTATAAAC-TCCTTCTCCTCATTA
321 TGGATTCTAGTAATGATCTTTGTTCATTTTGTGATTAGACACTATAAACAT--TTCTCCTCATTA
* ** * *
1055903 GGATAAATGATATTGATGGTTTTTTATTTTGCATGAAAATCTTTTCTTTGCTTTATTTTCCTTTG
384 GGATAAATGATATTGATGG--TTTTCTTTTGCATGAAAATCTTTT-TTTGC-ACA-ATT-CATT-
*
1055968 CATGAAA
442 CAT-AAG
*** * * * * * *** * *
1055975 ATCTTTTCTTTGCTTTATTTTCCCTGACATCAAAATTCATCCCTTATCTAAGGCAAGTATCGATT
1 A-C-AAGC-AT-C--GA--TT--CT--CGT-AAAAGTC-T--CTTTTCT-TTTCAAG-ATTG--G
*** * * * **
1056040 CTCGTAATAGTCTCTATTCATTTCAAGATTGGGAACGAAGAACTCATTCCCGTCATTCAGATACA
46 GAAGCAAAAG-CAC-ATTCCCTTC---ATT----A-G--G-A-T-A-------CA-T--G----A
* * * * ** * * *
1056105 CGATATTCATGCATTAGTGTCACAAGAATTGTTTTTATTTCCACCGTTTTTTATAGAATCAAAGT
82 C---ATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGATAGAATCAAAGT
* * * * *
1056170 TTGTCTCTTAAATAGGACAAACATTAATAGTCGTACTAATCCCCATTCTTTTTTAGGATTTGGCA
144 TTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTC-TTTTCAGGATTAGGCA
* * ** * **
1056235 CCATAAAGATAAGCCTTTTCATAAGGATACTCGATATTCATGCTTTGGTTTCACAAGAAAGGCTT
208 CCATAAACAT-AGTC-TTTC-TAA-GATACAAGATATTGATGCTTTGGTTTTGCAAGAAAGGCTT
* * * *
1056300 TCCTCCCCCCAATTTTTGTAGAGTCTAAGTTCGTGCCTTAAATGAGAGAAATATGGATTCTAGTA
269 TCTTCCCCCCAATTTTTGTAGAGTCTAAGTTCGTGCC-CAAATGAGACAAACATGGATTCTAGTA
* ** * * *
1056365 ATGATCGTCATTCATTTT-TAGATTAGGCACTATAAACACTTTTTCCTCTTTAGGATAAATGATA
333 ATGATCTTTGTTCATTTTGT-GATTAGACACTATAAACA-TTTCTCCTCATTAGGATAAATGATA
* *
1056429 TTAATGGTTTTCTTTTGCATGAAAATCATTTCTTTACCTTATTTCTTTAAAATCAAAATTCATCC
396 TTGATGGTTTTCTTTTGCATG-AAA--A--TCTTT---TT-TTGC------A-C--AATTCAT--
*
1056494 CTTATCTAAG
441 -TCA--TAAG
* *
1056504 ACAAACATCGATTCTCGTAACAA-TCT-TTATTCTTTTCAAGATTAGGAAGCAAAAGCACATTCC
1 ACAAGCATCGATTCTCGTAA-AAGTCTCTT-TTCTTTTCAAGATTGGGAAGCAAAAGCACATTCC
* * * * * * * *
1056567 ATTC-CTAGGGATACATAACAGTGATCCTTTAGTGTCGCAAGAAAAGGTTTTCCTTCCACTGTTT
64 CTTCATTA-GGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTT
* * * * * * * *
1056631 TTTAAAGAATCAAAGTTTGTCTGTTAAAAAAGATAAACGTGAGTAGTCAAACTAATCCCCATTCT
128 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCT
* * * * * * *
1056696 TTTTAGGATTAGGCTCCATAAACTTTGTC-TTCTAATAGGGATACACGATATTGATGATTTGCTT
193 TTTCAGGATTAGGCACCATAAACATAGTCTTTCT-A-A--GATACAAGATATTGATGCTTTGGTT
* *
1056760 TTGTAAGCAAGGCTTTCTT-CCCCCAATTTTTGTAGAGTCTAAGTTCGTGCCTCAAAT-AGGACA
254 TTGCAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAGAGTCTAAGTTCGTGCC-CAAATGA-GACA
*
1056823 AACATGGATTCTAGTAATAATCTTTGTTCATTTTGTGATTAGACACTATAAACACTTTCTCCTCA
317 AACATGGATTCTAGTAATGATCTTTGTTCATTTTGTGATTAGACACTATAAACA-TTTCTCCTCA
* * *
1056888 TTAGGATAATTGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCATATTTTCCTTA
381 TTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTT-TTTG----------C---
*
1056953 AAATCAAAATTCATCCATTCAACAAG
432 --A-C--AA-T--T-CATTC-ATAAG
* ** * *** *
1056979 ACAAGCATTGATTCTCGTAACTGTTTCCAATCTTTTCAAGATTGGGAACCAAGAA-CACATTCTC
1 ACAAGCATCGATTCTCGTAAAAGTCTCTTTTCTTTTCAAGATTGGGAAGCAA-AAGCACATTC-C
* * * * ** * * *
1057043 GTT-GTTAGGATACAT-AGCATTGATGTTTTGGTCTCGCAAGAATTGCTTTTATTTCCACCATTT
64 CTTCATTAGGATACATGA-CATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTT
* * *
1057106 TTTATAGAATCAAAGTTTGTCTCTTAAATAGGACAAACATGAATAGTCATACCAAT-CCCATTCT
128 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCT
* ** * *
1057170 TTTCAGGATTAGGCACCATAAACATAGTCTTTTCAGAAAGATACTCGATATTAACGCTTT-GTTT
193 TTTCAGGATTAGGCACCATAAACATAGTC-TTTC--TAAGATACAAGATATTGATGCTTTGGTTT
*** * * * ** *
1057234 TCGCAAGAAAGGCTTTCTTCCCTTTAATTTTTGTAGAGTCTGAGATCATATCTAGAATGAGACAA
255 T-GCAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAGAGTCTAAGTTCGTGCCCA-AATGAGACAA
** * * * *
1057299 ACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAGTAGGCACTATAAACACATTCTCTTCAT
318 ACATGGATTCTAGTAATGATCTTTGTTCATTTTGTGATTAGACACTATAAACA-TTTCTCCTCAT
** * * ** *
1057364 TAGGATAAATGATATTGATAATTTTTTTTTGCGTGGAAGTCTTTCTTCTGCCCTATTTTCCTTAA
382 TAGGATAAATGATATTGATGGTTTTCTTTTGCAT-GAA---AATC-T-T----T-TTTTGC----
*
1057429 AATCAAAATTCATCCCTTAAATAAG
432 -A-C--AATTCA----TT-CATAAG
* * * * * * * *
1057454 ACAGGCATCGATTCTCGTAAAAATGTCTATTCTTTTCAAGATT-GG-ATCCAAGGACACATTTTC
1 ACAAGCATCGATTCTCGTAAAAGTCTCTTTTCTTTTCAAGATTGGGAAGCAAAAG-CACA-TTCC
* * * * * * **
1057517 GTT-ATTCA-GATACATGTCATTGATGCTTTAGG-GTAGCAAGAATTA-TTTTTATTTCCATTGT
64 CTTCATT-AGGATACATGACATTGATGCTTT-GGTGTCGCAAGAA-AAGGTTTTCTTTCCACCGT
* * * * *
1057578 TTTTAATAGAATGAAAGTTTTTCTCTTAAATAGGACAAACATTAATAGTCATACTAATCCCCATT
126 TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATT
* * ** ** * *
1057643 CTTTTTAGGATTGGGCACCATAATGATAGTCTTTTCATAAGGATACTCGATATTAATGCTCTGGT
191 CTTTTCAGGATTAGGCACCATAAACATAGTC-TTTC-TAA-GATACAAGATATTGATGCTTTGGT
* * * * ** ** *
1057708 TTCGCAAAAAAGGCTTT-TTCCCCCTAATTTTTGTAGAGTCTAAGATCGCAACTTAAATAAGACA
253 TTTGCAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAGAGTCTAAGTTCG-TGCCCAAATGAGACA
* ** * * * * *
1057772 AACATAGATTCTAGTAATGATCTTCATTCAATTAGTCG-TTAGGCACTATAAACACGTTCTCGTC
317 AACATGGATTCTAGTAATGATCTTTGTTCATTTTGT-GATTAGACACTATAAACA-TTTCTCCTC
* * * * *
1057836 -TCTAGAATAAATGATATTGATGGTTTTTCTTTTACAAGGAAACCTTTTCTTTGCCTTAAAATCA
380 AT-TAGGATAAATGATATTGATGG-TTTTCTTTTGCATGAAAATCTTTT-TTTG-C-----A-C-
*
1057900 AAATTCATCCCATAAATAAG
434 -AATTCAT----T-CATAAG
* * * * * **
1057920 ACAAGCATCAATTCTCGTAACAGTCTCCTCTCTTTTCAAGATTGGGAAGCAAAAGCATATAACCT
1 ACAAGCATCGATTCTCGTAAAAGTCTCTTTTCTTTTCAAGATTGGGAAGCAAAAGCACATTCCCT
* * * * *
1057985 TCATTAGGATACAAGATATTGACGCTTTGGCT-TCACAAG-AAAGGCTTTCTT
66 TCATTAGGATACATGACATTGATGCTTTGG-TGTCGCAAGAAAAGGTTTTCTT
1058036 CCCCCCAATT
Statistics
Matches: 2361, Mismatches: 418, Indels: 408
0.74 0.13 0.13
Matches are distributed among these distances:
445 4 0.00
446 317 0.13
447 57 0.02
448 1 0.00
456 5 0.00
457 4 0.00
458 2 0.00
459 3 0.00
460 2 0.00
461 1 0.00
462 1 0.00
463 2 0.00
464 1 0.00
465 8 0.00
466 77 0.03
467 34 0.01
468 6 0.00
469 10 0.00
470 5 0.00
471 6 0.00
472 3 0.00
473 104 0.04
474 420 0.18
475 727 0.31
476 67 0.03
477 93 0.04
478 5 0.00
479 9 0.00
480 3 0.00
481 1 0.00
482 2 0.00
485 4 0.00
486 3 0.00
487 3 0.00
489 1 0.00
490 1 0.00
491 1 0.00
492 1 0.00
494 1 0.00
495 1 0.00
496 1 0.00
497 1 0.00
499 4 0.00
500 1 0.00
502 1 0.00
503 1 0.00
506 1 0.00
507 7 0.00
508 2 0.00
509 97 0.04
510 24 0.01
511 78 0.03
512 20 0.01
513 7 0.00
514 79 0.03
515 2 0.00
516 5 0.00
517 9 0.00
519 3 0.00
520 4 0.00
521 2 0.00
523 1 0.00
525 1 0.00
526 3 0.00
527 3 0.00
528 3 0.00
529 4 0.00
530 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (447 bp):
ACAAGCATCGATTCTCGTAAAAGTCTCTTTTCTTTTCAAGATTGGGAAGCAAAAGCACATTCCCT
TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTG
ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTT
CAGGATTAGGCACCATAAACATAGTCTTTCTAAGATACAAGATATTGATGCTTTGGTTTTGCAAG
AAAGGCTTTCTTCCCCCCAATTTTTGTAGAGTCTAAGTTCGTGCCCAAATGAGACAAACATGGAT
TCTAGTAATGATCTTTGTTCATTTTGTGATTAGACACTATAAACATTTCTCCTCATTAGGATAAA
TGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTTTTGCACAATTCATTCATAAG
Found at i:1055935 original size:475 final size:475
Alignment explanation
Indices: 1055045--1057973 Score: 2879
Period size: 475 Copynumber: 6.1 Consensus size: 475
1055035 TATCTAAGGT
* * * * * *
1055045 AAGCATCGATTCTTGTAA-AAGTCTCTTTTCTTTTCAAGATTAGGAAGCAAAAGCACATTC-CCT
1 AAGCATCGATTCTCGTAACAA-TCTCTATTCTTTTCAAGATTGGGAACCAAAAACACATTCTCGT
* ** *
1055108 TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCCTTCCACCGTTTTTG
65 T-ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACCGTTTTTT
* * *
1055173 ATAGAATCAAAGTCTGTCTCTTAAATAAGACAAACATGAGTAGTCATACTAATCCCCGTTCTTTT
129 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTT
* * * * *
1055238 CAGGATTAGGCACCATAAACATAGTCTTCTCGTAACGATACATGATATTGATGCTTTGGTTTCGT
194 CAGGATTAGGCACCATAAACATAGTCTTTTCATAAGGATACACGATATTGATGCTTTGGTTTCGC
* * * *
1055303 AGGAAATGCTTTCTGCCCCCCAATTTTT-TAGAGTCTAAGTTCGTGCCTCAAATAAGACAAACAT
259 AAGAAAGGCTTTCTTCCCCCCAATTTTTGTAGAGTCTAAGTTCGTG-CTCAAATGAGACAAACAT
* * ** * * * *
1055367 GGATCCTAGTAGTGATCTTTGTTCATTTCGTTATTAGATACTATAAACAGTTTCTCCTCATTAGG
323 GGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCCTCATTAGG
* * * *
1055432 ATAAATGATAATGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCATAAAATC
388 ATAAATGATATTGATGTTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
1055497 AAAATTCATCCTTTCAATAAGAC
453 AAAATTCATCCTTTCAATAAGAC
1055520 AAGCATCGATTCTCGTAACAATCTCTATTCTTTTCAAGATTGGGAACCAAAAACACATTCTCGTT
1 AAGCATCGATTCTCGTAACAATCTCTATTCTTTTCAAGATTGGGAACCAAAAACACATTCTCGTT
* * * * * * *
1055585 GTTAGGATACATGATATTAATGCTTTGGTGTTGTAAGAAAAGCTTTTATTTCCTCCGTTTTTGAT
66 ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACCGTTTTTTAT
** * **
1055650 AGGGTCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATAGTCGCACTAATCCCCATTCTTTTCA
131 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCA
* * * * *
1055715 GGATTAGGCACCATAAACATAGTCTTTT-ACCAAGGATACAAGATAATGACGCTTTGGTTTTGCA
196 GGATTAGGCACCATAAACATAGTCTTTTCA-TAAGGATACACGATATTGATGCTTTGGTTTCGCA
* *
1055779 AGAAAGGCTTTCTTCCCCCCAATTTTTGTAGAGTCAAAGTTCGTGC-C-AATGAGACAAACATAG
260 AGAAAGGCTTTCTTCCCCCCAATTTTTGTAGAGTCTAAGTTCGTGCTCAAATGAGACAAACATGG
** * * * *
1055842 ATTCTAGTAATGATCTTTGTTCGTTTTGTGATTTGACACTATAAACTCCTTCTCCTCATTAGGAT
325 ATTCTAGTAATGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCCTCATTAGGAT
* * **
1055907 AAATGATATTGATGGTTTTTTATTTTGCATGAAAATCTTTTCTTTGCTTTATTTTCCTTTGCATG
390 AAATGATATTGAT-G-TTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCC--T---T-
**** *
1055972 AAAATCTTTTCTTTGCTTTATTTTCCCTGACATCAAAATTCATCCCTTATCTAAGGC
447 AAAATC--AAAATT-C---A---T--C---C-T-----TTCA------A--TAAGAC
* * * * * * * * *
1056029 AAGTATCGATTCTCGTAATAGTCTCTATTCATTTCAAGATTGGGAACGAAGAACTCATTCCCGTC
1 AAGCATCGATTCTCGTAACAATCTCTATTCTTTTCAAGATTGGGAACCAAAAACACATTCTCGTT
* * * * * * ** *
1056094 ATTCA-GATACACGATATTCATGCATTAGTGTCACAAGAATTGTTTTTATTTCCACCGTTTTTTA
66 ATT-AGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACCGTTTTTTA
* * *
1056158 TAGAATCAAAGTTTGTCTCTTAAATAGGACAAACATTAATAGTCGTACTAATCCCCATTCTTTTT
130 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTC-TTTT
* * * * * * *
1056223 TAGGATTTGGCACCATAAAGATAAGCCTTTTCATAAGGATACTCGATATTCATGCTTTGGTTTCA
194 CAGGATTAGGCACCATAAACAT-AGTCTTTTCATAAGGATACACGATATTGATGCTTTGGTTTCG
* * * *
1056288 CAAGAAAGGCTTTCCTCCCCCCAATTTTTGTAGAGTCTAAGTTCGTGCCTTAAATGAGAGAAATA
258 CAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAGAGTCTAAGTTCGTG-CTCAAATGAGACAAACA
* * * *
1056353 TGGATTCTAGTAATGATCGTCATTCATTTT-TAGATTAGGCACTATAAACACTTTTTCCTCTTTA
322 TGGATTCTAGTAATGATCTTCATTCATTTTGT-GATTAGACACTATAAACACTTTCTCCTCATTA
* * * * * * *
1056417 GGATAAATGATATTAATGGTTTTCTTTTGCATGAAAATCATTTCTTTACCTTA-TTTCTTTAAAA
386 GGATAAATGATATTGATGTTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAA
1056481 TCAAAATTCATCCCTTATC--TAAGAC
451 TCAAAATTCAT-CCTT-TCAATAAGAC
* * * * * *
1056506 AAACATCGATTCTCGTAACAATCTTTATTCTTTTCAAGATTAGGAAGCAAAAGCACATTC-CATT
1 AAGCATCGATTCTCGTAACAATCTCTATTCTTTTCAAGATTGGGAACCAAAAACACATTCTCGTT
** * * * * * ** *
1056570 CCTAGGGATACATAACAGTGATCCTTTAGTGTCGCAAGAAAAGGTTTTCCTTCCACTGTTTTTTA
66 ATTA-GGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACCGTTTTTTA
* * * * * * * *
1056635 AAGAATCAAAGTTTGTCTGTTAAAAAAGATAAACGTGAGTAGTCAAACTAATCCCCATTCTTTTT
130 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTC
* * * * * * * * * *
1056700 AGGATTAGGCTCCATAAACTTTGTCTTCTAATAGGGATACACGATATTGATGATTTGCTTTTGTA
195 AGGATTAGGCACCATAAACATAGTCTTTTCATAAGGATACACGATATTGATGCTTTGGTTTCGCA
*
1056765 AGCAAGGCTTTCTT-CCCCCAATTTTTGTAGAGTCTAAGTTCGTGCCTCAAAT-AGGACAAACAT
260 AGAAAGGCTTTCTTCCCCCCAATTTTTGTAGAGTCTAAGTTCGTG-CTCAAATGA-GACAAACAT
* **
1056828 GGATTCTAGTAATAATCTTTGTTCATTTTGTGATTAGACACTATAAACACTTTCTCCTCATTAGG
323 GGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCCTCATTAGG
* * *
1056893 ATAATTGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCATATTTTCCTTAAAATC
388 ATAAATGATATTGATGTTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* *
1056958 AAAATTCATCCATTCAACAAGAC
453 AAAATTCATCCTTTCAATAAGAC
* ** * * * *
1056981 AAGCATTGATTCTCGTAACTGTTTCCAATCTTTTCAAGATTGGGAACCAAGAACACATTCTCGTT
1 AAGCATCGATTCTCGTAACAATCTCTATTCTTTTCAAGATTGGGAACCAAAAACACATTCTCGTT
* * * ** *
1057046 GTTAGGATACAT-AGCATTGATGTTTTGGTCTCGCAAGAATTGCTTTTATTTCCACCATTTTTTA
66 ATTAGGATACATGA-CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACCGTTTTTTA
* *
1057110 TAGAATCAAAGTTTGTCTCTTAAATAGGACAAACATGAATAGTCATACCAAT-CCCATTCTTTTC
130 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTC
* * * * * *
1057174 AGGATTAGGCACCATAAACATAGTCTTTTCAGAAAGATACTCGATATTAACGCTTTGTTTTCGCA
195 AGGATTAGGCACCATAAACATAGTCTTTTCATAAGGATACACGATATTGATGCTTTGGTTTCGCA
*** * * * *
1057239 AGAAAGGCTTTCTTCCCTTTAATTTTTGTAGAGTCTGAGATCAT-ATCTAGAATGAGACAAACAT
260 AGAAAGGCTTTCTTCCCCCCAATTTTTGTAGAGTCTAAGTTCGTGCTC-A-AATGAGACAAACAT
* * * *
1057303 GGATTCTAGTAATGATCTTCATTCATTTTGTGAGTAGGCACTATAAACACATTCTCTTCATTAGG
323 GGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCCTCATTAGG
* * *
1057368 ATAAATGATATTGATAATTTTT-TTTTGCGTGGAAGTC-TTTCTTCTGCCCTATTTTCCTTAAAA
388 ATAAATGATATTGAT-GTTTTTCTTTTGCATGGAAATCTTTTCTT-TGCCCTATTTTCCTTAAAA
* *
1057431 TCAAAATTCATCCCTTAAATAAGAC
451 TCAAAATTCATCCTTTCAATAAGAC
* * * * ** *
1057456 AGGCATCGATTCTCGTAAAAATGTCTATTCTTTTCAAGATT-GGATCCAAGGACACATTTTCGTT
1 AAGCATCGATTCTCGTAACAATCTCTATTCTTTTCAAGATTGGGAACCAAAAACACATTCTCGTT
* * * * **
1057520 ATTCA-GATACATGTCATTGATGCTTTAGG-GTAGCAAGAATTA-TTTTTATTTCCATTGTTTTT
66 ATT-AGGATACATGACATTGATGCTTT-GGTGTCGCAAGAA-AAGCTTTTATTTCCACCGTTTTT
* * * * *
1057582 AATAGAATGAAAGTTTTTCTCTTAAATAGGACAAACATTAATAGTCATACTAATCCCCATTCTTT
128 TATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTT
* * ** * * *
1057647 TTAGGATTGGGCACCATAATGATAGTCTTTTCATAAGGATACTCGATATTAATGCTCTGGTTTCG
193 TCAGGATTAGGCACCATAAACATAGTCTTTTCATAAGGATACACGATATTGATGCTTTGGTTTCG
* * * ** * *
1057712 CAAAAAAGGCTTT-TTCCCCCTAATTTTTGTAGAGTCTAAGATCGCAACTTAAATAAGACAAACA
258 CAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAGAGTCTAAGTTCG-TGCTCAAATGAGACAAACA
* * * * * *
1057776 TAGATTCTAGTAATGATCTTCATTCAATTAGTCG-TTAGGCACTATAAACACGTTCTCGTC-TCT
322 TGGATTCTAGTAATGATCTTCATTCATTTTGT-GATTAGACACTATAAACACTTTCTCCTCAT-T
* * * *
1057839 AGAATAAATGATATTGATGGTTTTTCTTTTACAAGGAAACCTTTTCTTTG---------CCTTAA
385 AGGATAAATGATATTGAT-GTTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAA
** *
1057895 AATCAAAATTCATCCCATAAATAAGAC
449 AATCAAAATTCATCCTTTCAATAAGAC
* * * *
1057922 AAGCATCAATTCTCGTAACAGTCTCCT-CTCTTTTCAAGATTGGGAAGCAAAA
1 AAGCATCGATTCTCGTAACAATCT-CTATTCTTTTCAAGATTGGGAACCAAAA
1057974 GCATATAACC
Statistics
Matches: 2025, Mismatches: 352, Indels: 162
0.80 0.14 0.06
Matches are distributed among these distances:
466 64 0.03
467 8 0.00
473 87 0.04
474 458 0.23
475 777 0.38
476 63 0.03
477 148 0.07
480 1 0.00
481 6 0.00
483 2 0.00
484 1 0.00
486 1 0.00
487 3 0.00
490 1 0.00
491 1 0.00
492 2 0.00
495 3 0.00
496 2 0.00
499 1 0.00
501 4 0.00
502 1 0.00
503 2 0.00
505 6 0.00
506 1 0.00
507 1 0.00
509 165 0.08
510 24 0.01
511 80 0.04
512 32 0.02
513 2 0.00
514 78 0.04
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (475 bp):
AAGCATCGATTCTCGTAACAATCTCTATTCTTTTCAAGATTGGGAACCAAAAACACATTCTCGTT
ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACCGTTTTTTAT
AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCA
GGATTAGGCACCATAAACATAGTCTTTTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAA
GAAAGGCTTTCTTCCCCCCAATTTTTGTAGAGTCTAAGTTCGTGCTCAAATGAGACAAACATGGA
TTCTAGTAATGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCCTCATTAGGATA
AATGATATTGATGTTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAA
ATTCATCCTTTCAATAAGAC
Found at i:1055973 original size:34 final size:34
Alignment explanation
Indices: 1055930--1055997 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
1055920 GGTTTTTTAT
1055930 TTTGCATGAAAATCTTTTCTTTGCTTTATTTTCC
1 TTTGCATGAAAATCTTTTCTTTGCTTTATTTTCC
1055964 TTTGCATGAAAATCTTTTCTTTGCTTTATTTTCC
1 TTTGCATGAAAATCTTTTCTTTGCTTTATTTTCC
1055998 CTGACATCAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.18, C:0.18, G:0.09, T:0.56
Consensus pattern (34 bp):
TTTGCATGAAAATCTTTTCTTTGCTTTATTTTCC
Found at i:1055987 original size:19 final size:19
Alignment explanation
Indices: 1055930--1055987 Score: 61
Period size: 19 Copynumber: 3.3 Consensus size: 19
1055920 GGTTTTTTAT
1055930 TTTGCATGAAAATCTTTTC
1 TTTGCATGAAAATCTTTTC
** *
1055949 TTTGC-T--TTAT-TTTCC
1 TTTGCATGAAAATCTTTTC
1055964 TTTGCATGAAAATCTTTTC
1 TTTGCATGAAAATCTTTTC
1055983 TTTGC
1 TTTGC
1055988 TTTATTTTCC
Statistics
Matches: 29, Mismatches: 6, Indels: 8
0.67 0.14 0.19
Matches are distributed among these distances:
15 9 0.31
16 3 0.10
18 3 0.10
19 14 0.48
ACGTcount: A:0.19, C:0.17, G:0.10, T:0.53
Consensus pattern (19 bp):
TTTGCATGAAAATCTTTTC
Found at i:1056010 original size:34 final size:34
Alignment explanation
Indices: 1055932--1056010 Score: 115
Period size: 34 Copynumber: 2.3 Consensus size: 34
1055922 TTTTTTATTT
* *
1055932 TGCATGAAAATCTTTTCTTTGCTTTATTTTCCTT
1 TGCATCAAAATCTTTTCTTTGCTTTATTTTCCTC
*
1055966 TGCATGAAAATCTTTTCTTTGCTTTATTTTCC-C
1 TGCATCAAAATCTTTTCTTTGCTTTATTTTCCTC
1055999 TGACATCAAAAT
1 TG-CATCAAAAT
1056011 TCATCCCTTA
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
33 2 0.05
34 40 0.95
ACGTcount: A:0.23, C:0.19, G:0.09, T:0.49
Consensus pattern (34 bp):
TGCATCAAAATCTTTTCTTTGCTTTATTTTCCTC
Found at i:1057821 original size:949 final size:949
Alignment explanation
Indices: 1055957--1057967 Score: 2299
Period size: 949 Copynumber: 2.1 Consensus size: 949
1055947 TCTTTGCTTT
* * * * * * *
1055957 ATTTTCCTTTGCATGAAAATCTTTTCTTTGCTTTATTTTCCCTGACATCAAAATTCATCCCTTAT
1 ATTTTCTTTTGCATGGAAATCTTTTCTTTGC--TATTTTCCTTAAAATCAAAATTCATCCATTAA
* * * * * * *
1056022 CTAAGGCAAGTATCGATTCTCGTAA-TAGTCTCTATTCATTTCAAGATTGGGAACGAAGAACTCA
64 C-AAGACAAGCATCGATTCTCGTAACT-GTCTCCAATCTTTTCAAGATTGGGAACCAAGAACACA
* * * * *
1056086 TTCCCGTCATTCAGATACACGATATTCATGCATTAGTGTCACAAGAATTGTTTTTATTTCCACCG
127 TTCCCGTCATTCAGATACAAGACATTCATGCATTAGTCTCACAAGAATTGCTTTTATTTCCACCA
* * *
1056151 TTTTTTATAGAATCAAAGTTTGTCTCTTAAATAGGACAAACATTAATAGTCGTACTAATCCCCAT
192 TTTTTTATAGAATCAAAGTTTGTCTCTTAAATAGGACAAACATGAATAGTCATACCAATCCCCAT
* * * * * * *
1056216 TCTTTTTTAGGATTTGGCACCATAAAGATAAGCCTTTTCATAAGGATACTCGATATTCATGCTTT
257 TCTTTTTCAGGATTAGGCACCATAAACATAAGCCTTTTCAGAAAGATACTCGATATTAACGCTTT
* * *
1056281 GGTTTCACAAGAAAGGCTTTCCTCCCCCCAATTTTTGTAGAGTCTAAGTTCGTGCCTTAAATGAG
322 GGTTTCACAAGAAAGGCTTTCCTCCCCCCAATTTTTGTAGAGTCTAAGATCATACCTTAAATGAG
* * * * *
1056346 AGAAATATGGATTCTAGTAATGATCGTCATTCATTTTTAGATTAGGCACTATAAACACTTTTTCC
387 ACAAACATGGATTCTAGTAATGATCGTCATTCATTTTTAGAGTAGGCACTATAAACACATTCTCC
* ** * *
1056411 TCTTTAGGATAAATGATATTAATGGTTTTCTTTTGCATGAAAATCATTTCTTTACCTTATTTCTT
452 TCATTAGGATAAATGATATTAATAATTTTCTTTTGCATGAAAATCATTTCTTTACCCTATTTCCT
** * *
1056476 TAAAATCAAAATTCATCCCTTATCTAAGACAAACATCGATTCTCGTAACAATCTTTATTCTTTTC
517 TAAAATCAAAATTCATCCCTTAAATAAGACAAACATCGATTCTCGTAAAAATCTCTATTCTTTTC
* * * *
1056541 AAGATTAGGAAGCAAAAGCACATTCCATTCCTAGGGATACATAACAGTGATCCTTTAGTGTCGCA
582 AAGATTAGGAACCAAAAGCACATTCCATTACTA-GGATACATAACAGTGATCCTTTAGGGTAGCA
* * * *
1056606 AGAAAAGGTTTTCCTTCCACTGTTTTTTAAAGAATCAAAGTTTGTCTGTTAAAAAAGATAAACGT
646 AGAAAAGGTTTTACTTCCACTGTTTTTTAAAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACAT
* * * * *
1056671 GAGTAGTCAAACTAATCCCCATTCTTTTTAGGATTAGGCTCCATAAACTTTGTCTTCTAATAGGG
711 GAATAGTCAAACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTAATAAGG
* * * * **
1056736 ATACACGATATTGATGATTTGCTTTTGTAAGCAAGGCTTTCTTCCCCCAATTTTTGTAGAGTCTA
776 ATACACGATATTAATGATCTGCTTTCGCAAAAAAGGCTTTCTTCCCCCAATTTTTGTAGAGTCTA
* *** * * ** * *
1056801 AGTTCGTGCCTCAAATAGGACAAACATGGATTCTAGTAATAATCTTTGTTCATTTTGTGATTAGA
841 AGATCGCAACTCAAATAAGACAAACATAGATTCTAGTAATAATCTTCATTCAATTAGTGATTAGA
* * *
1056866 CACTATAAACACTTTCTCCTCAT-TAGGATAATTGATATTGAT-G
906 CACTATAAACACGTTCTCCTC-TCTAGAATAAATGATATTGATGG
1056909 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCATATTTTCCTTAAAATCAAAATTCATCCATTCA
1 ATTTTCTTTTGCATGGAAATCTTTTCTTTG-C-TATTTTCCTTAAAATCAAAATTCATCCATT-A
* *
1056974 ACAAGACAAGCATTGATTCTCGTAACTGTTTCCAATCTTTTCAAGATTGGGAACCAAGAACACAT
63 ACAAGACAAGCATCGATTCTCGTAACTGTCTCCAATCTTTTCAAGATTGGGAACCAAGAACACAT
* ** * ** * *
1057039 TCTCGTTGTT-AGGATACATAG-CATTGATGTTTTGGTCTCGCAAGAATTGCTTTTATTTCCACC
128 TCCCGTCATTCA-GATACA-AGACATTCATGCATTAGTCTCACAAGAATTGCTTTTATTTCCACC
1057102 ATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAGGACAAACATGAATAGTCATACCAAT-CCCA
191 ATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAGGACAAACATGAATAGTCATACCAATCCCCA
*
1057166 TTC-TTTTCAGGATTAGGCACCATAAACAT-AGTCTTTTCAGAAAGATACTCGATATTAACGCTT
256 TTCTTTTTCAGGATTAGGCACCATAAACATAAGCCTTTTCAGAAAGATACTCGATATTAACGCTT
* * * *** * *
1057229 TGTTTTCGCAAGAAAGGCTTTCTTCCCTTTAATTTTTGTAGAGTCTGAGATCATATC-TAGAATG
321 TGGTTTCACAAGAAAGGCTTTCCTCCCCCCAATTTTTGTAGAGTCTAAGATCATACCTTA-AATG
*
1057293 AGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGT-GAGTAGGCACTATAAACACATTC
385 AGACAAACATGGATTCTAGTAATGATCGTCATTCATTTT-TAGAGTAGGCACTATAAACACATTC
* * * * * * *
1057357 TCTTCATTAGGATAAATGATATTGATAATTTTTTTTTGCGTGGAAGTC-TTTCTTCTGCCCTATT
449 TCCTCATTAGGATAAATGATATTAATAATTTTCTTTTGCATGAAAATCATTTCTT-TACCCTA-T
** *
1057421 TTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAGGCATCGATTCTCGTAAAAATGTCTATTC
512 TTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAACATCGATTCTCGTAAAAATCTCTATTC
* * * * * ** * *
1057486 TTTTCAAGATT-GGATCC-AAGGACACATTTTCGTTATTCA-GATACATGTCATTGATGCTTTAG
577 TTTTCAAGATTAGGAACCAAAAG-CACA-TTCCATTACT-AGGATACATAACAGTGATCCTTTAG
* * * * * * * *
1057548 GGTAGCAAGAATTA-TTTTTATTTCCATTG-TTTTTAATAGAATGAAAGTTTTTCTCTTAAATAG
639 GGTAGCAAGAA-AAGGTTTTACTTCCACTGTTTTTTAA-AGAATCAAAGTTTGTCTCTTAAAAAA
* * * **
1057611 GACAAACATTAATAGTCATACTAATCCCCATTCTTTTTAGGATTGGGCACCATAATGATAGTCTT
702 GACAAACATGAATAGTCAAACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTT
* * * * *
1057676 TTCATAAGGATACTCGATATTAATGCTCTGGTTTCGCAAAAAAGGCTTT-TTCCCCCTAATTTTT
767 CTAATAAGGATACACGATATTAATGATCTGCTTTCGCAAAAAAGGCTTTCTTCCCCC-AATTTTT
* *
1057740 GTAGAGTCTAAGATCGCAACTTAAATAAGACAAACATAGATTCTAGTAATGATCTTCATTCAATT
831 GTAGAGTCTAAGATCGCAACTCAAATAAGACAAACATAGATTCTAGTAATAATCTTCATTCAATT
* *
1057805 AGTCG-TTAGGCACTATAAACACGTTCTCGTCTCTAGAATAAATGATATTGATGG
896 AGT-GATTAGACACTATAAACACGTTCTCCTCTCTAGAATAAATGATATTGATGG
* * * * * *
1057859 TTTTTCTTTTACAAGGAAACCTTTTCTTTG-------CCTTAAAATCAAAATTCATCCCATAAAT
1 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCTATTTTCCTTAAAATCAAAATTCAT-CCATTAAC
* * **
1057917 AAGACAAGCATCAATTCTCGTAACAGTCTCCTCTCTTTTCAAGATTGGGAA
65 AAGACAAGCATCGATTCTCGTAACTGTCTCCAATCTTTTCAAGATTGGGAA
1057968 GCAAAAGCAT
Statistics
Matches: 888, Mismatches: 152, Indels: 49
0.82 0.14 0.04
Matches are distributed among these distances:
941 66 0.07
942 4 0.00
948 26 0.03
949 441 0.50
950 128 0.14
951 9 0.01
952 209 0.24
953 5 0.01
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (949 bp):
ATTTTCTTTTGCATGGAAATCTTTTCTTTGCTATTTTCCTTAAAATCAAAATTCATCCATTAACA
AGACAAGCATCGATTCTCGTAACTGTCTCCAATCTTTTCAAGATTGGGAACCAAGAACACATTCC
CGTCATTCAGATACAAGACATTCATGCATTAGTCTCACAAGAATTGCTTTTATTTCCACCATTTT
TTATAGAATCAAAGTTTGTCTCTTAAATAGGACAAACATGAATAGTCATACCAATCCCCATTCTT
TTTCAGGATTAGGCACCATAAACATAAGCCTTTTCAGAAAGATACTCGATATTAACGCTTTGGTT
TCACAAGAAAGGCTTTCCTCCCCCCAATTTTTGTAGAGTCTAAGATCATACCTTAAATGAGACAA
ACATGGATTCTAGTAATGATCGTCATTCATTTTTAGAGTAGGCACTATAAACACATTCTCCTCAT
TAGGATAAATGATATTAATAATTTTCTTTTGCATGAAAATCATTTCTTTACCCTATTTCCTTAAA
ATCAAAATTCATCCCTTAAATAAGACAAACATCGATTCTCGTAAAAATCTCTATTCTTTTCAAGA
TTAGGAACCAAAAGCACATTCCATTACTAGGATACATAACAGTGATCCTTTAGGGTAGCAAGAAA
AGGTTTTACTTCCACTGTTTTTTAAAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGAATA
GTCAAACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTAATAAGGATACA
CGATATTAATGATCTGCTTTCGCAAAAAAGGCTTTCTTCCCCCAATTTTTGTAGAGTCTAAGATC
GCAACTCAAATAAGACAAACATAGATTCTAGTAATAATCTTCATTCAATTAGTGATTAGACACTA
TAAACACGTTCTCCTCTCTAGAATAAATGATATTGATGG
Found at i:1058365 original size:316 final size:308
Alignment explanation
Indices: 1057716--1058295 Score: 713
Period size: 309 Copynumber: 1.9 Consensus size: 308
1057706 GTTTCGCAAA
* *
1057716 AAAGGCTTT-TTCCC-CCTAATTTTTGTAGAGTCTAAGATCGCAACTTAAATAAGACAAACATAG
1 AAAGGCTTTCTTCCCACC-AATTTTTGTAGAGCCTAAGATCGCAACTCAAATAAGACAAACATAG
* * *
1057779 ATTCTAGTAATGATCTTCATTCAATTAGTCGTTAGGCACTATAAACACGTTCTCGTCTCTAGAAT
65 ATTCTAGTAATGATCTTCATTCAATTAGTAGTTAGGCACTATAAACACATTCTCCTCTCTAGAAT
*
1057844 AAATGATATTGATGGTTTTTCTTTTACAAGGAAACCTTTTCTTTGCCTTAAAATCAAAATTCATC
130 AAATGATATTGATGGTTTTTCTTTTACAAGAAAACCTTTTCTTTGCCTTAAAATCAAAATTCATC
*
1057909 CCATAAATAAGACAAGCATCAATTCTCGTAACAGTCTCCTCTCTTTTCAAGATTGGGAAGCAAAA
195 CCATAAATAAGACAAGCATCAATTCTCGTAACAGTCTCCTCTCTTTTCAAGATTGGCAAGCAAAA
* * * *
1057974 GCATATAACCTTCATTAGGATACAAGATATTGACGCTTTGGCTTCACAAG
260 GCACATAA-CTTCATTAGGATACAAGACAATAACGCTTTGGCTTCACAAG
* * *** *
1058024 AAAGGCTTTCTTCCCCCCAATTTTTGTAGAGCCTAAGTTCGTGCCTCAAATGAA-ACAAACATGG
1 AAAGGCTTTCTTCCCACCAATTTTTGTAGAGCCTAAGATCGCAACTCAAAT-AAGACAAACATAG
* * * * *
1058088 ATTGTAGTAATGATCTTCATTCATTTTG-AGATTAGGCACTATAAACACATTCTCCTCTTTAGGA
65 ATTCTAGTAATGATCTTCATTCAATTAGTAG-TTAGGCACTATAAACACATTCTCCTCTCTAGAA
* * * *
1058152 TAAATGATATTGATGG-TTTTCTTTTGCATGAAAATCATTTTTTTCCCTATTTTCCTTAAAATCA
129 TAAATGATATTGATGGTTTTTCTTTTACAAGAAAA-C---CTTTT--C--TTTGCCTTAAAATCA
* * * * * *
1058216 AAATTCATCCCTTAACTAAGGCAAGCATCGATTCTCGTAACAGTCTCCAT-TCTTTTGAGGATTG
186 AAATTCATCCCATAAATAAGACAAGCATCAATTCTCGTAACAGTCTCC-TCTCTTTTCAAGATTG
1058280 GCAAGCAAAAGCACAT
250 GCAAGCAAAAGCACAT
1058296 TCAATTGATT
Statistics
Matches: 231, Mismatches: 28, Indels: 18
0.83 0.10 0.06
Matches are distributed among these distances:
308 25 0.11
309 112 0.48
310 4 0.02
312 4 0.02
314 1 0.00
316 84 0.36
317 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.34
Consensus pattern (308 bp):
AAAGGCTTTCTTCCCACCAATTTTTGTAGAGCCTAAGATCGCAACTCAAATAAGACAAACATAGA
TTCTAGTAATGATCTTCATTCAATTAGTAGTTAGGCACTATAAACACATTCTCCTCTCTAGAATA
AATGATATTGATGGTTTTTCTTTTACAAGAAAACCTTTTCTTTGCCTTAAAATCAAAATTCATCC
CATAAATAAGACAAGCATCAATTCTCGTAACAGTCTCCTCTCTTTTCAAGATTGGCAAGCAAAAG
CACATAACTTCATTAGGATACAAGACAATAACGCTTTGGCTTCACAAG
Found at i:1058598 original size:19 final size:20
Alignment explanation
Indices: 1058574--1058611 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
1058564 TCTAGCAATG
1058574 ATCTTTCC-TTTGCATAAAA
1 ATCTTTCCTTTTGCATAAAA
1058593 ATCTTTCCTTTTGCATAAA
1 ATCTTTCCTTTTGCATAAA
1058612 TGATATTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.29, C:0.21, G:0.05, T:0.45
Consensus pattern (20 bp):
ATCTTTCCTTTTGCATAAAA
Found at i:1059054 original size:489 final size:490
Alignment explanation
Indices: 1058127--1059067 Score: 1146
Period size: 489 Copynumber: 1.9 Consensus size: 490
1058117 GATTAGGCAC
* * *
1058127 TATAAACACATTCTCCTCTTTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCATTT
1 TATAAACACATTCTCCTCATTAGCATAAATGATATTGATGATTTTCTTTTGCATGAAAATCATTT
** * *
1058192 TTTTCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAACTAAGGCAAGCATCGATTCTCGTAAC
66 CCTTCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAACTAAGACAAGCATCGATTCTCATAAC
* * * * * * *
1058257 AGTCTCCATTCTTTTGAGGATTGGCAAGCAAAAGCACATTCAATTGATTGGGATGCATGACAATA
131 AATCTCCATTCTTTTCAAGATTGGCAACCAAAAGCACATTCAATTGACTAGGATACATGACAATA
** * * *
1058322 ATGCTTTAGTGTTGCAAGAAAAGGTTTTCCTTCCACCATTTTTGATTGAATCATAGTTTGTCTCT
196 ATGCTTTAGTGTCACAAGAAAA-GTTTTACTTCCACCATTTTTGATTGAATCAAAATTTGTCTCT
* * * * * * *
1058387 TAAATAAGACAAACATGAGTAGTCGTTCTAATCCCCATTCTTTTCGAGATTAGGCTTCACAAACA
260 TAAATAAGACAAACAAGAATAGTCGTACTAATCCCCACTCTTTTCAAGACTAGGCTACACAAACA
*
1058452 TTGTCTTCGAATAAGGATACACAATATTGATGCTTTCGTTTTGCAAGAAAGGCTTTCTTCCCCCA
325 TTGTCTTCGAATAAGGATACACAATATTGACGCTTTCGTTTTGCAAGAAAGGCTTTCTTCCCCCA
* * * * * *
1058517 ATTTTTGTAGACTATATGTTCGTGCCTTAAATGAGACAAAACTGGATTCTAGCAATGATCTTTCC
390 ATTTTTGTAGACTATACGTCCATACCTCAAACGAGACAAAACTGGATTCTAGCAATGATCTTTCC
1058582 TTTGCATAAAAATCTTTCCTTTTGCATAAATGATAT
455 TTTGCATAAAAATCTTTCCTTTTGCATAAATGATAT
*
1058618 TATAAACACTTTCTGCCT-ATTAGCATAAATGATATT-ATTGATTTTCTTTTGCATGAAAATC-T
1 TATAAACACATTCT-CCTCATTAGCATAAATGATATTGA-TGATTTTCTTTTGCATGAAAATCAT
* *
1058680 TTCCTTCGCACTATTTTCCTTAAAATCAAAATTCATCCCTTATCTAAGATAAGCATCGATTCTCA
64 TTCCTTC-C-CTATTTTCCTTAAAATCAAAATTCATCCCTTAACTAAGACAAGCATCGATTCTCA
* * * * ** *
1058745 TACCAATCTCCGTTGTTTTCAAGATTGGGAACCAAGAA-CACATTCCTTTTACTAGGATACATGA
127 TAACAATCTCCATTCTTTTCAAGATTGGCAACCAA-AAGCACATTCAATTGACTAGGATACATGA
* * * * * * *
1058809 CATTGATGCTTTGGTGTCACATG-AAA-TTTTATTTCCATCGTTTTTGA-TGAAATCAAAATTTG
191 CAATAATGCTTTAGTGTCACAAGAAAAGTTTTACTTCCACCATTTTTGATTG-AATCAAAATTTG
* * *
1058871 TCTCTTAAATAAGATAAACAAGAATAGTCGTACTAATCCTCACTCTTTTCAAGACTAGGC-ACAT
255 TCTCTTAAATAAGACAAACAAGAATAGTCGTACTAATCCCCACTCTTTTCAAGACTAGGCTACAC
*** *** * *
1058935 AAACATAT-TCTTTTCATAAGGATACTTGATATTGACGCTTTGGTTTTGCAAGAAAGGCTTTGTT
320 AAACAT-TGTCTTCGAATAAGGATACACAATATTGACGCTTTCGTTTTGCAAGAAAGGCTTTCTT
* * *
1058999 CCCCCTAATTTTTGTAGAGTCTACGTCCATACCTCAAACGAGAC-AAACGTGGATTCTAGTAATG
384 CCCCC-AATTTTTGTAGACTATACGTCCATACCTCAAACGAGACAAAAC-TGGATTCTAGCAATG
1059063 ATCTT
447 ATCTT
1059068 CATTCATTTT
Statistics
Matches: 377, Mismatches: 64, Indels: 20
0.82 0.14 0.04
Matches are distributed among these distances:
488 66 0.18
489 129 0.34
490 7 0.02
491 55 0.15
492 118 0.31
493 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (490 bp):
TATAAACACATTCTCCTCATTAGCATAAATGATATTGATGATTTTCTTTTGCATGAAAATCATTT
CCTTCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAACTAAGACAAGCATCGATTCTCATAAC
AATCTCCATTCTTTTCAAGATTGGCAACCAAAAGCACATTCAATTGACTAGGATACATGACAATA
ATGCTTTAGTGTCACAAGAAAAGTTTTACTTCCACCATTTTTGATTGAATCAAAATTTGTCTCTT
AAATAAGACAAACAAGAATAGTCGTACTAATCCCCACTCTTTTCAAGACTAGGCTACACAAACAT
TGTCTTCGAATAAGGATACACAATATTGACGCTTTCGTTTTGCAAGAAAGGCTTTCTTCCCCCAA
TTTTTGTAGACTATACGTCCATACCTCAAACGAGACAAAACTGGATTCTAGCAATGATCTTTCCT
TTGCATAAAAATCTTTCCTTTTGCATAAATGATAT
Found at i:1059608 original size:477 final size:471
Alignment explanation
Indices: 1057984--1060360 Score: 1907
Period size: 477 Copynumber: 5.0 Consensus size: 471
1057974 GCATATAACC
* * *
1057984 TTCATTAGGATACAAGATATTGACGCTTTGGCTTC-ACAAGAAAGGCTTTCTTCCCCCCAATTTT
1 TTCATAAGGATACATGATATTGACGCTTTGGTTTCGA-AAGAAAGGCTTTCTT-CCCCCAATTTT
* * * **
1058048 TGTAGAGCCTAAGTTCGTGCCTCAAATGAAACAAACATGGATTGTAGTAATGATCTTCATTCATT
64 TGTAGAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTGTTCATT
* ** * *
1058113 TTGAGATTAGGCACTATAAACACATTCTCCTCTTTAGGATAAATGATATTGATGGTTTTCTTTTG
129 TTGTGATTAGAAACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTG
* * * * *
1058178 CATGAAAATCATT-T-TTTTCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAACTAAGGCAAG
194 CAAGGAAATC-TTCTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAG
* * * * * ** *
1058241 CATCGATTCTCGTAACAGTCTCCATTCTTTTGAGGATTGGCAAGCAA-AAGCACATTCAATTGAT
258 CATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAA-CACATTCCCTTCAT
** * * * * * * * ** * * *
1058305 TGGGATGCATGACAATAATGCTTTAGTGTTGCAAGAAAAGGTTTTCCTTCCACCATTTTTGATTG
322 CAGAATACATGACATTGATGCTTTGGTGTCGC-AG--AAGATTTTATTTCCATCGTTTTTGATAG
* * * * * *
1058370 AATCATAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCGTTCTAATCCCCATTCTTTTCGAG
384 AATCAAAATTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATT-TTTTCAAG
** * *
1058435 ATTAGGCTTCACAAACATTGTCTT
448 ATTAGGCACCATAAACATAGTCTT
*** ** * * * *
1058459 CGAATAAGGATACACAATATTGATGCTTTCGTTTTGCAAGAAAGGCTTTCTTCCCCCAATTTTTG
1 TTCATAAGGATACATGATATTGACGCTTTGGTTTCGAAAGAAAGGCTTTCTTCCCCCAATTTTTG
* * * * * *
1058524 TAGACTATATGTTCGTGCCTTAAATGAGACAAA-ACTGGATTCTAGCAATGATC--T-TTC-CTT
66 TAGAGTCTAAGTTCGTGCCTCAAATGAGACAAACA-TGGATTCTAGTAATGATCTTTGTTCATTT
* * * *
1058584 TG-CA-TA-AAA--AT-----C-TT-TCCT--TTTGCATAAATGATATT-ATAAACACTTTCTGC
130 TGTGATTAGAAACTATAAACACATTCTCCTCATTAGGATAAATGATATTGAT---GA-TTT-T--
* * * *
1058634 CTATTAGCATAAATGATATTATTGATTTTCTTTTGCATGAAAATCTTTCCTTCGCACTATTTTCC
188 CT-TTTGC---AA-G-GA--A---A---TC--TT-C-T----CT------TT-GCCCTATTTTCC
** * * * * *
1058699 TTAAAATCAAAATTCATCCCTTATCTAAGATAAGCATCGATTCTCATACCAATCTCCGTTGTTTT
224 TTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTT
* * * *
1058764 CAAGATTGGGAACCAAGAACACATTCCTTTTA-CTAGGATACATGACATTGATGCTTTGGTGTCA
289 CAAGATTGGGAACCAAGAACACATTCCCTTCATC-AGAATACATGACATTGATGCTTTGGTGTCG
*
1058828 CATGAA-ATTTTATTTCCATCGTTTTTGAT-GAAATCAAAATTTGTCTCTTAAATAAGATAAACA
353 CA-GAAGATTTTATTTCCATCGTTTTTGATAG-AATCAAAATTTGTCTCTTAAATAAGACAAACA
* * * * * *
1058891 AGAATAGTCGTACTAATCCTCACTCTTTTCAAGACTAGGCA-CATAAACATATTCTT
416 TGAATAGTCATACTAATCCCCA-TTTTTTCAAGATTAGGCACCATAAACATAGTCTT
* * * *
1058947 TTCATAAGGATACTTGATATTGACGCTTTGGTTTTGCAAGAAAGGCTTTGTTCCCCCTAATTTTT
1 TTCATAAGGATACATGATATTGACGCTTTGGTTTCGAAAGAAAGGCTTTCTTCCCCC-AATTTTT
* * * * * * **
1059012 GTAGAGTCTACGTCCATACCTCAAACGAGACAAACGTGGATTCTAGTAATGATCTTCATTCATTT
65 GTAGAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTGTTCATTT
** * *
1059077 TGT-AGTTAGGCACTATAAAAACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTGG
130 TGTGA-TTAGAAACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTG
*
1059141 CAAGGATATATC-TCT-TTTGCCCTATTTTCCTTAAAATCAAAATTCAT-CTTGTAAATAAGACA
194 CAAGGA-A-ATCTTCTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCT-TAAATAAGACA
* * * *
1059203 AGCATCGATTCTCATAACAGTTTCCTTTCTTTTTAAGATTGGGAAGCAA-AAGCACATTCCCTTC
256 AGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAA-CACATTCCCTTC
* * ***
1059267 ATCAGAATACCTGAC-TTGGATACTTTGGTGTCGCGAGAAAAGATTTTCCATCCATCGTTTTTGA
320 ATCAGAATACATGACATT-GATGCTTTGGTGTCGC-AG--AAGATTTTATTTCCATCGTTTTTGA
** * * *
1059331 TAGAATCAATGTTTATCTCTTAAATAAGACAAACATGAGTAGTCATACTAATCCCCGTTATTTTC
381 TAGAATCAAAATTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATT-TTTTC
* *
1059396 AGGATTAGGCACCATAACCATTA-TCTT
445 AAGATTAGGCACCATAAACA-TAGTCTT
* * * * * * * *
1059423 ATCATAAAGATACATGATATTGATGCTTCGGTTTCGTAAAAAAAAGTTTTCTTTTCCCCAATTTT
1 TTCATAAGGATACATGATATTGACGCTTTGGTTTCG-AAAGAAAGGCTTTC-TTCCCCCAATTTT
* *
1059488 TGTAGAGTCTAAGTTCGTGCCTCAAATGAGACAAACTTGGATTCTAGTAGTGATCTTTGTTCATT
64 TGTAGAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTGTTCATT
* * * * * *
1059553 TTGTGATTAGAAACTGTAAGCACTTTCTCCTTATTGGGATAAATGATAATGATGATTTTCTTTTG
129 TTGTGATTAGAAACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTG
* * * ** * * *
1059618 CATGGAAATCTTTTCTTTACCCTATTTTCCACAAAATCAAAATTGC-CCCCTTCAATAAGGCAAG
194 CAAGGAAATCTTCTCTTTGCCCTATTTTCCTTAAAATCAAAATT-CATCCCTTAAATAAGACAAG
* * * * * * *
1059682 CGTCGGTTCTCGTAATAGCCTCCATTCTTTTCAAGATTGGAAACCAAGAACACATTCTCGTT-AT
258 CATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTC-CCTTCAT
* * * * *
1059746 TAGGAA-ACATGACATTGACGCTTTGGTGTCGTAAGAAAAGCTTTTATTTCC-TCCGTTTTTTAT
322 CA-GAATACATGACATTGATGCTTTGGTGTCG-CAG--AAGATTTTATTTCCAT-CGTTTTTGAT
* * * *
1059809 AGAATCAAAATTTGTCTCTTAAATAAAACAAACCTGAATAGTCACACTAATCCCTATTTTGTTCA
382 AGAATCAAAATTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTTT-TTCA
*
1059874 AGATTAGGCACCATAAACGTAGTCTT
446 AGATTAGGCACCATAAACATAGTCTT
* *
1059900 TTCATAAGGATACAAGATAATGACGCTTTGGTTTC-ACAAGAAAGGCTTTCTTCCCCTCAATTTT
1 TTCATAAGGATACATGATATTGACGCTTTGGTTTCGA-AAGAAAGGCTTTCTTCCCC-CAATTTT
* * * *
1059964 TGTAGAGCCAAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATCATTGTTCATT
64 TGTAGAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTGTTCATT
* * *
1060029 TTGTGATTAGAAAATATAAACACATTCTCCTCATTAAGATAAATGATATTGATGGTTTTCTTTTG
129 TTGTGATTAGAAACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTG
* * * **
1060094 CATGAAAATCTTCTCTTTGCTCTATTTTCCTTAAAATCAAAATTCATCCCTTAACCAAGACAAGC
194 CAAGGAAATCTTCTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGC
* * * * * * *
1060159 ATCGA-TCCCTGTAATAGTCTCCATTCTTTTCAGGATTAGGAAGCAA-AAGCACATTCCCTCCAT
259 ATCGATTCTC-ATAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAA-CACATTCCCTTCAT
** * * * * * * * * *
1060222 TTGGATACATGTCATCGATGCTTTGGTGTCGC--AAGGTTTTCTTTCGACCTTTTTTTATAGAAT
322 CAGAATACATGACATTGATGCTTTGGTGTCGCAGAAGATTTTATTTCCATCGTTTTTGATAGAAT
* * * * * *
1060285 CAAAGTTTGTCTCTTAAATAAGATACACATGAGTAGTTATACTAATCCCCA-TTCTT---GATTA
387 CAAAATTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTTTTTCAAGATTA
*
1060346 GGCACTATAAACATA
452 GGCACCATAAACATA
1060361 TTCTCCTCTT
Statistics
Matches: 1520, Mismatches: 281, Indels: 211
0.76 0.14 0.10
Matches are distributed among these distances:
455 2 0.00
456 15 0.01
458 4 0.00
459 5 0.00
460 2 0.00
462 2 0.00
463 4 0.00
465 2 0.00
466 19 0.01
467 2 0.00
468 3 0.00
469 3 0.00
470 7 0.00
471 76 0.05
472 114 0.08
473 6 0.00
474 59 0.04
475 138 0.09
476 302 0.20
477 361 0.24
478 20 0.01
479 1 0.00
480 1 0.00
484 1 0.00
485 2 0.00
486 1 0.00
488 61 0.04
489 130 0.09
490 3 0.00
491 3 0.00
492 118 0.08
493 7 0.00
494 2 0.00
495 3 0.00
496 2 0.00
497 2 0.00
498 2 0.00
500 4 0.00
501 2 0.00
503 2 0.00
504 5 0.00
505 5 0.00
507 15 0.01
508 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.36
Consensus pattern (471 bp):
TTCATAAGGATACATGATATTGACGCTTTGGTTTCGAAAGAAAGGCTTTCTTCCCCCAATTTTTG
TAGAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTGTTCATTTT
GTGATTAGAAACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCA
AGGAAATCTTCTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCAT
CGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATCAGA
ATACATGACATTGATGCTTTGGTGTCGCAGAAGATTTTATTTCCATCGTTTTTGATAGAATCAAA
ATTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTTTTTCAAGATTAGGCA
CCATAAACATAGTCTT
Found at i:1060794 original size:777 final size:782
Alignment explanation
Indices: 1059590--1061089 Score: 1920
Period size: 777 Copynumber: 1.9 Consensus size: 782
1059580 TCCTTATTGG
*
1059590 GATAAATGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCACAAAAT
1 GATAAATGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTACCCTATTTTCCACAAAAT
* * * *
1059655 CAAAATTGCCCCCTTCAATAAGGCAAGCGTCGGTTCTCGTAATAGCCTCCATTCTTTTCAAGATT
66 CAAAATTGCCCCATTC-ATAAGACAAGCATCGATTCTCGTAATAGCCTCCATTCTTTTCAAGATT
* * * *
1059720 GGAAACCAAGAACACATTCTCGTTATTAGGAAACATGACATTGACGCTTTGGTGTCGTAAGAAAA
130 GGAAACCAAGAACACATTCTCGTTATTAGGAAACATGACATTCACGCTTTGGGGTAGCAAGAAAA
* * * * * **
1059785 GCTTTTATTTCCTCCGTTTTTTATAGAATCAAAATTTGTCTCTTAAATAAAACAAACCTGAATAG
195 GCTTTTATTTCCACCGTTTCTGATAAAATCAAAATTTGTCTCTGAAATAAAACAAAAATGAATAG
*
1059850 TCACACTAATCCCTATTTTGTTCAAGATTAGGCACCATAAACGTAGTCTTTTCATAAGGATACAA
260 TCACACTAATCCCCATTTTGTTCAAGATTAGGCACCAT-AAC--AGTCTTTTCATAAGGATACAA
*
1059915 GATAATGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCCTCAATTTTTGTAGAGCCAAAGTTC
322 GATAATGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAGAGCCAAAGTTC
*
1059980 GTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATCATTGTTCATTTTGTGATTAGAAAATA
387 GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCATTGTTCATTTTGTGATTAGAAAATA
* *
1060045 TAAACACATTCTCCTCATTAAGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTCTCT
452 TAAACACATTCTCCTCATTAAGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTCTCG
* * *
1060110 TTG-CTCTATTTTCCTTAAAATCAAAATTCATCCCTTAACCAAGACAAGCATCG-ATCCCTGTAA
517 TTGCCT-TATTTTCCTTAAAATCAAAATTCATCCCTTAACAAAGACAAGCACCGAAT-CCTATAA
* * * * * * * *
1060173 TAGTCTCCATTCTTTTCAGGATTAGGAAGCAA-AAGCACATTCCC-TCCATTTGGATACATGTCA
580 CAATCTCCAATCTTTTCAAGATTAGGAACCAACAA-CACATTCCCGT-CATTAGAATACATGACA
* * * * *
1060236 TCGATGCTTTGGTGTCGCAAG-G-TTTTCTTTCGACCTTTTTTTATAGAATCAAAGTTTGTCTCT
643 TCGATGCTTTGGTGTCGCAAGAGCTTTTATTTCAACCGTTTTTGATAGAATCAAAATTTGTCTCT
1060299 TAAATAAGATACACATGAGTAGTTATACTAATCCCCATTCTTGATTAGGCACTATAAACATATTC
708 TAAATAAGATACACATGAGTAGTTATACTAATCCCCATTCTTGATTAGGCACTATAAACATATTC
1060364 TCCTCTTCAA
773 TCCTCTTCAA
* * * **
1060374 GATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCATTTT-TTTGCCCTATTTTCCTTAAAA
1 GATAAATGATAATGATGATTTTCTTTTGCATGAAAATC-TTTTCTTTACCCTATTTTCCACAAAA
* * ** * *
1060438 TCAAAATT-CATCCCATATC-TAAGATAAGCATCGATTCTCGTAATAGTCTCTTTTTTTTTCAAT
65 TCAAAATTGC--CCCAT-TCATAAGACAAGCATCGATTCTCGTAATAGCCTCCATTCTTTTCAAG
* * * * * * *
1060501 ATTGGGATCCAAGAACACATTTTCGTTATTCGTG-TACATGTCATTCATGCTTTGGGGTAGCAAG
127 ATTGGAAACCAAGAACACATTCTCGTTATTAG-GAAACATGACATTCACGCTTTGGGGTAGCAAG
** * *
1060565 AATTG-TTTT-TTTCCCACCGTTTCTGA-AAATATCAAAGTTTGTCAT-TGAAATAAGACAAAAA
191 AAAAGCTTTTATTT-CCACCGTTTCTGATAAA-ATCAAAATTTGTC-TCTGAAATAAAACAAAAA
* * * *
1060626 TGAATAGTCATACTAATCCCCATTCTT-TTTAGGATTAGGCACCAT-A-A-TCTTTTCATATGGA
253 TGAATAGTCACACTAATCCCCATT-TTGTTCAAGATTAGGCACCATAACAGTCTTTTCATAAGGA
* * ** * *
1060687 TACAAGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAGAGTCTA
317 TACAAGATAATGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAGAGCCAA
*
1060752 AGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTGTTCATTTTGTGATTAGA
382 AGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCATTGTTCATTTTGTGATTAGA
* * * * * *
1060817 CACTATAAACACTTTCTCTTCATTAGGATAAGTGATATTGATGATTTTCTTTTGCATGAAAATCT
447 AAATATAAACACATTCTCCTCATTAAGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCT
* * ** * *
1060882 TTTCGTTGCCTTATTTTCCTTAAATTCAAAATTCATCTTTTATCAAAGACAAGCACCGAATCTTA
512 TCTCGTTGCCTTATTTTCCTTAAAATCAAAATTCATCCCTTAACAAAGACAAGCACCGAATCCTA
* *
1060947 TAACAATCTCCAATCTTTTCAAGATTGGGAACCAACAACACATTCCCGTTATTAGAATACATGAC
577 TAACAATCTCCAATCTTTTCAAGATTAGGAACCAACAACACATTCCCGTCATTAGAATACATGAC
* *
1061012 ATTGATGCTTTGGTGTCGCAAGAAATGCTTTTATTTCAATCGTTTTTGATAGAATCAAAATTTGT
642 ATCGATGCTTTGGTGTCGCAAG--A-GCTTTTATTTCAACCGTTTTTGATAGAATCAAAATTTGT
1061077 CTCTTAAATAAGA
704 CTCTTAAATAAGA
1061090 CAAACAAGAA
Statistics
Matches: 612, Mismatches: 86, Indels: 38
0.83 0.12 0.05
Matches are distributed among these distances:
777 312 0.51
778 8 0.01
781 2 0.00
782 49 0.08
783 77 0.13
784 153 0.25
785 9 0.01
786 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (782 bp):
GATAAATGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTACCCTATTTTCCACAAAAT
CAAAATTGCCCCATTCATAAGACAAGCATCGATTCTCGTAATAGCCTCCATTCTTTTCAAGATTG
GAAACCAAGAACACATTCTCGTTATTAGGAAACATGACATTCACGCTTTGGGGTAGCAAGAAAAG
CTTTTATTTCCACCGTTTCTGATAAAATCAAAATTTGTCTCTGAAATAAAACAAAAATGAATAGT
CACACTAATCCCCATTTTGTTCAAGATTAGGCACCATAACAGTCTTTTCATAAGGATACAAGATA
ATGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAGAGCCAAAGTTCGTGC
CTCAAATGAGACAAACATGGATTCTAGTAATGATCATTGTTCATTTTGTGATTAGAAAATATAAA
CACATTCTCCTCATTAAGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTCTCGTTGC
CTTATTTTCCTTAAAATCAAAATTCATCCCTTAACAAAGACAAGCACCGAATCCTATAACAATCT
CCAATCTTTTCAAGATTAGGAACCAACAACACATTCCCGTCATTAGAATACATGACATCGATGCT
TTGGTGTCGCAAGAGCTTTTATTTCAACCGTTTTTGATAGAATCAAAATTTGTCTCTTAAATAAG
ATACACATGAGTAGTTATACTAATCCCCATTCTTGATTAGGCACTATAAACATATTCTCCTCTTC
AA
Found at i:1062430 original size:475 final size:475
Alignment explanation
Indices: 1060340--1062843 Score: 2407
Period size: 475 Copynumber: 5.3 Consensus size: 475
1060330 TCCCCATTCT
* * * * *
1060340 TGATTAGGCACTATAAACATATTCTCCTC-TTCAAGATAAATGATATTGATGGTTTTCTTTTGCA
1 TGATTAGACACTATAAACACATTCTCCTCATT-AGGATAAATAATATTGATGATTTT-TTTTGCA
* ** *
1060404 TGAAAATCATTTT-TTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCATATCTAAGATAAGCA
64 TGAAAATC-TTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCA
* ** * * * *
1060468 TCGATTCTCGTAATAGTCTCTTTTTTTTTCAATATTGGGATCCAAGAA-CACATT---TTCGTTA
128 TCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAA-AAGCACATTCAATTCATTA
* * * * * * ** * *
1060529 TTCGTGTACATGTCATTCATGCTTTGGGGT-AGCAAGAATTGTTTTT-TTCCCACCGTTTCTGA-
192 --AG-ATACAAGACATTGATGCTTTGGTGTCA-CAAGAAAGGTTTTTGTTTCCACCGTTTTTGAT
* * * ** *
1060591 AAATATCAAAGTTTGTCA-TTGAAATAAGACAAAAATGAATAGTCATACTAATCCC-CATTCTTT
253 AGA-ATCAAAGTTTGTCACTT-AAAAAAGACAAACATGAATAGTCGCACTAA-CCCTTATTCTTT
* * * * *
1060654 TTAGGATTAGGCACCAT----A-A-TCTTTTCATATGGATACAAGATATTGATGCTTTGGTTTTG
315 TCAAGATTAGGCACCATAAACATAGTCTTCTCACAAGGATACAAGATATTGATGCTTTGGTTTTG
* *
1060713 CAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAGAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
380 CAAGAAAGGCTTTCTTCCCCCCAATTTTTGAAGAGTCTACGTTCGTGCCTCAAATGAGACAAACA
1060778 TGGATTCTAGTAATGATCTTTGTTCATTTTG
445 TGGATTCTAGTAATGATCTTTGTTCATTTTG
* * * *
1060809 TGATTAGACACTATAAACACTTTCTCTTCATTAGGATAAGTGATATTGATGATTTTCTTTTGCAT
1 TGATTAGACACTATAAACACATTCTCCTCATTAGGATAAATAATATTGATGATTTT-TTTTGCAT
* * * ** * *
1060874 GAAAATCTTTTCGTTGCCTTATTTTCCTTAAATTCAAAATTCATCTTTTATCA-AAGACAAGCAC
65 GAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTA-AATAAGACAAGCAT
* ** * * **
1060938 CGAATCTTATAACAATCTCCAATCTTTTCAAGATTGGGAACCAACAA-CACATTCCCGTT-ATT-
129 CGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAA-AAGCACATT-CAATTCATTA
* * * * * * *
1061000 AGAATACATGACATTGATGCTTTGGTGTCGCAAGAAATGCTTTTATTTCAATCGTTTTTGATAGA
192 AG-ATACAAGACATTGATGCTTTGGTGTCACAAGAAAGGTTTTTGTTTCCACCGTTTTTGATAGA
* * * *
1061065 ATCAAAATTTGTCTCTTAAATAAGACAAACAAGAATAGTCGCACTAATCTCC--ATTCTTTT-AA
256 ATCAAAGTTTGTCACTTAAAAAAGACAAACATGAATAGTCGCACTAA-C-CCTTATTCTTTTCAA
* * * ** *
1061127 GGATTAGGCA-CAAAAACATAGTCTTTTCATAAGGATACTTGATATTAATGCTTTGGTTTTGCAA
319 -GATTAGGCACCATAAACATAGTCTTCTCACAAGGATACAAGATATTGATGCTTTGGTTTTGCAA
* * * * ** * * * *
1061191 GAAAGG-TTTGTTCTCCCTAATTTTTGTAGAGTCTAAATCCGTACCTCAACTGAGGCAAACATGG
383 GAAAGGCTTTCTTCCCCCCAATTTTTGAAGAGTCTACGTTCGTGCCTCAAATGAGACAAACATGG
* **
1061255 ATTCTAGTAATGACCTTCATTCATTTTG
448 ATTCTAGTAATGATCTTTGTTCATTTTG
* * * * * * * *
1061283 TGGTTAGGCACTATATACTCATTCTCCTTATTAGGATAAATGATAATGATAATTTTCTTTTGCAT
1 TGATTAGACACTATAAACACATTCTCCTCATTAGGATAAATAATATTGATGATTTT-TTTTGCAT
* * * *
1061348 GGAAATCTTTTCTTTGCCCTATTTT-CTATAAAGTCAAAATTCATCCCTTCAACAAGACAAGCAT
65 GAAAATCTTTTCTTTGCCCTATTTTCCT-TAAAATCAAAATTCATCCCTTAAATAAGACAAGCAT
* * * * * *
1061412 CAATTCACATAACAGTCTCCATTCTTTTCAAGATTAGGAACTAAGAA-CACATTCTCATT-ATTA
129 CGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAA-AAGCACATTC-AATTCATTA
* * * *** * * * * * * *
1061475 GGATACATGACATTGATGCCTTGGTGTGGTAAAAAAAGCTTTTATTTCCTCAGTTTTTGATAAAA
192 AGATACAAGACATTGATGCTTTGGTGTCACAAGAAAGGTTTTTGTTTCCACCGTTTTTGATAGAA
* * * * * * *
1061540 TCGAAGTTTGTCTCTCAAATAAGACAAACATGAATAGTCACACTAATCCCCT-TTCTTTTCAGGA
257 TCAAAGTTTGTCACTTAAAAAAGACAAACATGAATAGTCGCACTAA-CCCTTATTCTTTTCAAGA
* *
1061604 TTAGGTACCATAAACATAGTCTT-T-TC----AT--AAG-----GATGCTTTGGTTTTGCAAGAA
321 TTAGGCACCATAAACATAGTCTTCTCACAAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAA
* * *
1061656 AAGCTTTCTTCCCCCTC-ATTTTTGTAA-AGTCCACGTTCGTGCCTCAAATGAAACAAACATGGA
386 AGGCTTTCTTCCCCC-CAATTTTTG-AAGAGTCTACGTTCGTGCCTCAAATGAGACAAACATGGA
*
1061719 TTCTAGTAATAATCTTTGTTCATTTTG
449 TTCTAGTAATGATCTTTGTTCATTTTG
* *
1061746 TGATTAGACACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCAT
1 TGATTAGACACTATAAACACATTCTCCTCATTAGGATAAATAATATTGATGATTTT-TTTTGCAT
* * * * ** *
1061811 TAAAATCTTTTCCTCGCTCTATTTTCCTTAAAATCAAAATTCATCCCTTAACCAAGACAAGCATT
65 GAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATC
* * **
1061876 GATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCAAAAGCACATTCCCTTCATTAAGA
130 GATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAGCACATTCAATTCATTAAGA
* * *
1061941 TACATGACATTGATGCTTTGGTGTCACAAGAAAAGGTTTTT-TTTCCACTGTTTTTGATAGAATT
195 TACAAGACATTGATGCTTTGGTGTCACAAG-AAAGGTTTTTGTTTCCACCGTTTTTGATAGAATC
* * * *
1062005 AAAGTTTGTCTCTTAAAAAAGATAAACATGAGTAGTCGTACTAATCCC-TATTCTTTTCAAGATT
259 AAAGTTTGTCACTTAAAAAAGACAAACATGAATAGTCGCACTAA-CCCTTATTCTTTTCAAGATT
* * * * * * *
1062069 AGGTACCATAAACAT-TTCCTTCTCATAAGGATACATGATATTGATGGTTTGGCTTTGTAAGAAA
323 AGGCACCATAAACATAGT-CTTCTCACAAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAA
* * *
1062133 GGCTTTATTCCCCCCAATTTTTGAAGAGTCTAAGTTTAG-GCCTCAAATGAGACAAACATGGATT
387 GGCTTTCTTCCCCCCAATTTTTGAAGAGTCTACG-TTCGTGCCTCAAATGAGACAAACATGGATT
* * *
1062197 CTAGTAACGATCTTTGCTCGTTTTG
451 CTAGTAATGATCTTTGTTCATTTTG
* * * * *
1062222 TGACTAGACACTATAAACACATTCTCCTCAATAGGATAAATTATATTGGTGACTTTTTTTGCATG
1 TGATTAGACACTATAAACACATTCTCCTCATTAGGATAAATAATATTGATGATTTTTTTTGCATG
* * *
1062287 AAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTAATCCAATT-AGTAAGACAAGCATC
66 AAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCC-CTTAAATAAGACAAGCATC
** * * * **
1062351 GATTCTCGTAACAGTCTTTATTCCTTTT-ATGATTGGGAACCTAGAGCACATTTCAATT-ATTCG
130 GATTCTCGTAACAGTCTCCATT-CTTTTCAAGATTGGGAACCAAAAGCACA-TTCAATTCATTAA
* ** ** *
1062414 GATTCAAGACATTGATGCTTTGGTGTTGCAAGAATTGTTTTTGTTTCCACCGTTTTTTATAGAAT
193 GATACAAGACATTGATGCTTTGGTGTCACAAGAAAGGTTTTTGTTTCCACCGTTTTTGATAGAAT
* * * *
1062479 CAAAGTTTGTCACTTAAATAAGACAAACATGAATTGTCGCACTAACCCTTATTCTTTTTAGGATT
258 CAAAGTTTGTCACTTAAAAAAGACAAACATGAATAGTCGCACTAACCCTTATTCTTTTCAAGATT
* * * *
1062544 AGGCACCATAAACATAGTCTTTTCACAAGGATATAAGATATTAATGCTTTGATTTTGCAAGAAAG
323 AGGCACCATAAACATAGTCTTCTCACAAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAG
* * *
1062609 GCTTTCTTCCCCCCAATTTTTGTAGAGCCTACGTTCGTGCCTCAAATGAGACAAACATTGATTCT
388 GCTTTCTTCCCCCCAATTTTTGAAGAGTCTACGTTCGTGCCTCAAATGAGACAAACATGGATTCT
1062674 AGTAATGATCTTTGTTCATTTTG
453 AGTAATGATCTTTGTTCATTTTG
* * * * * * *
1062697 TAATTAGACATTACT-AACACTTTCTCCTTATTAGCATAAATAATATTGTTGATTTTTTTTTCCA
1 TGATTAGACACTA-TAAACACATTCTCCTCATTAGGATAAATAATATTGATGA-TTTTTTTTGCA
* * * * * *
1062761 TGGAAATCTTTACTTTGCCCAATTTTCCTTTAATTCAAAATTCATCCCTTAAATAAGACAAG-GT
64 TGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCAT
* *
1062825 CAATTCTCGTAATAGTCTC
129 CGATTCTCGTAACAGTCTC
1062844 TGTCGCAACG
Statistics
Matches: 1690, Mismatches: 283, Indels: 118
0.81 0.14 0.06
Matches are distributed among these distances:
462 29 0.02
463 344 0.20
464 12 0.01
467 1 0.00
468 4 0.00
469 185 0.11
470 71 0.04
471 8 0.00
472 2 0.00
473 9 0.01
474 357 0.21
475 452 0.27
476 213 0.13
477 3 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (475 bp):
TGATTAGACACTATAAACACATTCTCCTCATTAGGATAAATAATATTGATGATTTTTTTTGCATG
AAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATCG
ATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAGCACATTCAATTCATTAAGAT
ACAAGACATTGATGCTTTGGTGTCACAAGAAAGGTTTTTGTTTCCACCGTTTTTGATAGAATCAA
AGTTTGTCACTTAAAAAAGACAAACATGAATAGTCGCACTAACCCTTATTCTTTTCAAGATTAGG
CACCATAAACATAGTCTTCTCACAAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAGGCT
TTCTTCCCCCCAATTTTTGAAGAGTCTACGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT
AATGATCTTTGTTCATTTTG
Found at i:1063921 original size:78 final size:78
Alignment explanation
Indices: 1063822--1064022 Score: 226
Period size: 79 Copynumber: 2.6 Consensus size: 78
1063812 AATAACAGGG
* * * * *
1063822 TTGGAGTGTTCCCTT-GAAAATAACGGGGCTGGAGTATCCCCGGTTGTGAGAAATCGATGA-TTA
1 TTGGAGT-ATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAAT-ATTTA
*
1063885 GAAAAAAAATCGGGA
64 GAAAAAAAACCGGGA
* *
1063900 TTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTTGG
1 TTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATA-TTTAG
* * * *
1063965 GAATAAAGCCGGGG
65 AAAAAAAACCGGGA
* * *
1063979 TTGGAGTATCCCCTCGGAAGTAACGGGGTTGGAGTATCCCCGAT
1 TTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCGAT
1064023 GAAATAACGA
Statistics
Matches: 104, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
77 7 0.07
78 45 0.43
79 52 0.50
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.25
Consensus pattern (78 bp):
TTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTAGA
AAAAAAACCGGGA
Found at i:1064030 original size:28 final size:28
Alignment explanation
Indices: 1063974--1064045 Score: 90
Period size: 28 Copynumber: 2.6 Consensus size: 28
1063964 GGAATAAAGC
** *
1063974 CGGGGTTGGAGTATCCCCTCGGAAGTAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
1064002 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
* *
1064030 CGAGGTTGGAGCATCC
1 CGGGGTTGGAGTATCC
1064046 TCAATTGTGA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.24, C:0.21, G:0.35, T:0.21
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGAGGAAATAA
Done.