genome.fa.s2690.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2690
Parameters: 2 7 7 80 10 50 1000
Length:  72955

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6734--6759	13	2.0	13	100	0	52	30	15	15	38	1.88
6714--6777	32	2.0	33	87	3	94	28	12	18	40	1.87
9313--9353	13	3.2	13	85	0	64	31	12	17	39	1.86
9313--9375	26	2.5	25	87	7	83	33	14	15	36	1.88
13243--13287	21	2.1	21	84	8	56	22	20	4	53	1.63
15506--15531	13	2.0	13	100	0	52	30	15	15	38	1.88
15486--15549	32	2.0	33	90	3	103	28	14	18	39	1.90
15486--15556	19	4.0	18	72	25	62	26	12	21	39	1.89
15940--15965	13	2.0	13	100	0	52	38	15	15	30	1.88
16008--16072	33	2.0	32	90	3	103	36	15	12	35	1.85
16789--17076	104	2.9	100	85	6	395	32	18	24	24	1.97
16781--17089	52	6.1	50	81	6	349	33	17	23	25	1.96
17109--17260	28	5.3	29	81	7	161	19	16	26	37	1.93
17303--17445	29	5.0	28	77	7	135	25	17	30	27	1.97
17301--17451	57	2.6	57	81	4	151	25	16	31	26	1.97
18896--18953	22	2.8	21	86	5	73	0	6	8	84	0.78
18893--18954	21	2.8	22	85	14	83	0	6	9	83	0.79
20763--20912	52	2.9	52	89	4	223	31	16	17	34	1.92
20900--20926	13	2.1	13	100	0	54	29	14	14	40	1.86
20966--21032	33	2.0	33	88	0	98	40	17	11	29	1.86
26154--26645	79	6.2	78	78	6	431	32	13	25	27	1.94
26167--26458	157	1.9	158	85	2	408	35	11	23	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26154--26645	158	3.1	157	80	3	515	32	13	25	27	1.94
28952--29073	63	1.9	63	86	0	172	39	13	18	28	1.88
29374--29399	12	2.2	12	100	0	52	0	0	7	92	0.39
32829--32866	20	1.9	20	88	0	58	36	13	21	28	1.91
32851--32905	20	2.8	20	74	0	56	41	12	12	32	1.81
37195--37323	52	2.5	52	94	0	231	29	18	15	36	1.92
37367--37393	13	2.1	13	100	0	54	40	14	14	29	1.86
37710--38186	28	16.9	28	85	4	584	23	16	27	32	1.96
38196--38268	13	5.5	14	73	12	64	36	17	12	32	1.87
38196--38268	26	2.8	26	74	13	78	36	17	12	32	1.87
44071--44113	15	2.9	15	71	0	50	16	0	41	41	1.48
46335--46425	45	2.0	45	97	0	173	18	21	16	42	1.89
51571--51746	20	7.7	20	68	25	84	44	12	15	27	1.83
51571--51746	91	1.9	91	90	4	284	44	12	15	27	1.83
51620--51696	41	1.9	41	84	7	104	45	11	12	29	1.78
51660--51756	50	1.9	51	91	2	160	46	12	16	24	1.81
58297--58346	15	3.3	15	88	5	66	46	24	22	8	1.78
58656--58924	89	3.0	89	87	0	378	37	13	17	31	1.89
59761--59815	21	2.7	21	80	8	60	38	14	10	36	1.81
59879--59918	21	1.9	21	84	0	53	37	7	10	45	1.66
60118--60471	89	4.1	89	82	6	431	39	13	15	31	1.87
63835--63878	19	2.3	19	84	4	52	72	6	6	13	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63998--64068	9	7.4	9	70	17	54	73	2	2	21	1.09
63955--64054	21	4.7	21	66	23	57	70	6	0	24	1.10
64891--64933	16	2.7	16	79	13	52	60	2	4	32	1.30
64986--65032	21	2.3	20	82	7	51	57	0	2	40	1.11
65446--65479	14	2.4	14	90	0	50	47	0	0	52	1.00
65507--65553	19	2.4	19	89	10	69	27	0	0	72	0.85
65520--65561	20	2.0	21	86	4	59	35	0	0	64	0.94
66828--66878	14	3.6	14	77	15	59	62	1	0	35	1.06
68585--68693	56	2.0	56	84	10	145	51	3	8	36	1.50
68670--68862	96	2.0	97	89	2	298	45	5	5	44	1.50
69217--69259	22	2.0	22	100	0	86	51	2	0	46	1.13
70186--70253	21	3.3	21	72	10	68	58	1	10	29	1.40
72420--72446	1	27.0	1	100	0	54	100	0	0	0	0.00

Tables:   1

The End!