Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2691
Parameters: 2 7 7 80 10 50 1000
Length:  63784

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5997--6071
20
3.8
20
80
3
80
40
12
13
34
1.81
5994--6071
40
2.0
39
87
2
111
39
12
12
34
1.82
6597--7667
85
12.6
85
87
8
1451
21
18
32
28
1.96
6597--7669
28
37.9
29
89
7
1529
21
17
32
28
1.96
8896--8951
1
56.0
1
81
0
67
0
1
7
91
0.50
8897--8952
11
5.0
11
89
6
78
0
1
8
89
0.56
8896--8951
26
2.2
24
90
6
85
0
1
7
91
0.50
22018--22062
20
2.3
20
92
3
74
60
8
8
22
1.55
22982--23056
20
3.8
20
80
3
80
40
12
13
34
1.81
22979--23056
40
2.0
39
87
2
111
39
12
12
34
1.82
24037--24108
22
3.2
22
90
2
108
56
9
1
31
1.40
27398--27437
11
3.9
10
84
15
55
60
0
0
40
0.97
27374--27429
27
2.1
27
83
6
69
55
0
0
44
0.99
27398--27437
20
2.0
20
85
9
55
60
0
0
40
0.97
28263--28305
15
2.9
15
80
16
54
58
0
0
41
0.98
29148--29180
16
2.0
17
88
5
50
54
0
12
33
1.37
29917--29965
21
2.3
22
82
10
66
34
4
0
61
1.15
31968--32035
33
2.0
34
94
2
120
36
13
8
41
1.75
32868--32905
19
2.0
19
85
10
51
52
2
0
44
1.14
33844--33887
20
2.2
19
80
11
52
72
0
0
27
0.85
35028--35110
10
8.7
10
71
16
52
36
0
0
63
0.94
35062--35106
21
2.2
21
84
7
58
31
0
0
68
0.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35139--35260
28
4.4
28
70
16
76
50
0
1
46
1.16
35884--35909
4
6.5
4
100
0
52
46
0
0
53
1.00
35907--35939
7
4.7
7
96
0
57
15
0
9
75
1.03
36082--36108
3
9.0
3
100
0
54
33
0
0
66
0.92
36228--36262
2
17.5
2
100
0
70
48
0
0
51
1.00
37688--37730
3
14.3
3
100
0
86
32
0
0
67
0.91
37954--38001
20
2.3
21
86
10
64
29
0
0
70
0.87
40385--40430
17
2.7
18
90
6
69
52
0
4
43
1.21
40394--40426
10
3.5
10
84
16
52
51
0
6
42
1.26
40458--40505
20
2.4
21
93
6
82
54
0
0
45
0.99
41227--41283
21
2.6
22
78
10
55
42
5
0
52
1.24
41940--42042
52
2.0
52
96
0
188
36
6
11
44
1.68
42229--42290
29
2.2
29
94
2
108
37
22
8
32
1.83
47758--47803
16
2.9
16
80
3
58
47
4
0
47
1.21
48825--48905
20
3.9
20
75
20
60
51
1
0
46
1.08
49224--49263
21
1.9
21
90
10
64
37
0
0
62
0.95
49465--49535
19
3.7
18
77
11
61
42
1
1
54
1.17
49465--49517
20
2.7
20
77
14
56
47
0
1
50
1.12
49514--49558
17
2.7
16
83
10
54
35
2
0
62
1.08
50431--50474
22
2.0
23
86
8
65
65
0
4
29
1.12
50893--50923
1
31.0
1
100
0
62
0
0
100
0
0.00
56884--56977
2
47.5
2
73
10
68
40
3
6
50
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57030--57150
49
2.6
47
82
10
117
33
2
2
61
1.23
57104--57171
20
3.7
19
74
22
74
35
4
1
58
1.27
57030--57134
49
2.2
49
84
5
135
33
2
2
60
1.26
57101--57168
33
2.1
33
97
0
127
35
2
1
60
1.21
57080--57186
20
5.7
19
72
19
73
37
2
0
58
1.19
57243--57277
13
2.5
15
86
13
56
22
0
0
77
0.78
57663--57691
4
7.2
4
100
0
58
24
0
0
75
0.80
58479--58516
16
2.3
17
86
4
51
60
5
2
31
1.33
59621--59732
15
7.3
14
70
18
64
41
0
0
58
1.04
59652--59706
17
3.4
17
75
25
64
41
0
0
58
0.98
59652--59716
18
3.9
19
70
27
58
44
0
0
55
0.99
59623--59728
32
3.4
32
80
14
98
41
0
0
57
1.05
60039--60131
32
3.0
31
77
18
95
63
1
0
35
1.02
60056--60131
30
2.5
30
81
12
93
64
1
0
34
1.02
60884--60939
20
2.7
20
76
18
60
71
0
1
26
0.96
61618--61666
14
3.5
13
81
15
53
36
0
0
63
0.95
61620--61669
15
3.4
15
74
20
52
38
0
0
62
0.96
61617--61679
29
2.2
27
76
20
65
38
0
0
61
0.96
61875--61953
28
2.8
28
84
7
97
56
0
0
43
0.99
62169--62206
19
1.9
19
89
5
58
55
0
0
44
0.99
62274--62332
22
2.8
22
75
25
65
37
0
0
62
0.95
62271--62332
20
2.9
23
71
26
64
37
0
0
62
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62940--63034
28
3.2
28
64
18
75
54
10
8
26
1.63
62941--63059
61
2.0
61
100
0
238
52
10
8
27
1.65
63562--63591
14
2.1
14
93
6
51
60
0
0
40
0.97

Tables:   1

The End!