Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2693
Parameters: 2 7 7 80 10 50 1000
Length:  45721

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2881--2918
18
2.3
17
86
13
53
36
5
2
55
1.37
4246--4312
11
6.1
11
70
19
50
40
0
0
59
0.97
4252--4314
18
3.4
19
80
10
69
39
0
0
60
0.97
4410--4445
2
18.0
2
100
0
72
50
0
0
50
1.00
5728--5770
5
7.5
6
85
15
56
48
0
0
51
1.00
7261--7323
24
2.5
25
82
10
74
60
1
0
38
1.07
7265--7317
23
2.3
24
77
9
56
58
1
0
39
1.09
7544--7596
19
2.8
19
69
11
54
62
1
0
35
1.06
8052--8101
23
2.1
24
85
3
66
50
0
4
46
1.20
9044--9101
7
7.9
7
76
16
55
41
0
0
58
0.98
9054--9101
16
3.0
16
73
11
53
37
0
0
62
0.95
10149--10203
12
4.7
12
71
10
51
47
0
0
52
1.00
10215--10247
11
3.1
11
86
8
50
54
3
0
42
1.15
10473--10510
15
2.6
15
88
12
53
31
0
0
68
0.90
10463--10503
21
2.0
20
85
4
55
39
0
0
60
0.96
10481--10574
42
2.2
42
80
10
95
37
3
4
55
1.36
11749--11790
21
2.0
21
86
13
61
40
0
0
59
0.97
11818--11843
10
2.6
10
100
0
52
46
7
7
38
1.61
12604--12641
19
2.0
20
84
5
51
39
0
0
60
0.97
14094--14310
34
6.4
34
82
3
233
27
6
25
41
1.80
18718--18936
34
6.5
34
86
2
280
25
7
26
41
1.81
18718--18936
102
2.2
101
89
1
339
25
7
26
41
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21912--21945
16
2.1
17
88
5
52
61
0
0
38
0.96
22962--23053
29
3.2
29
70
17
75
54
0
0
45
0.99
23035--23068
16
2.2
15
89
5
50
61
0
0
38
0.96
23733--23766
17
1.9
18
88
5
52
35
5
0
58
1.22
28373--28410
18
2.1
18
95
0
67
57
0
0
42
0.98
28517--28554
19
2.0
20
94
5
69
28
2
0
68
1.03
28536--28569
15
2.3
15
90
10
52
32
0
0
67
0.91
28649--28697
25
1.9
26
87
4
73
55
2
2
40
1.23
28814--28851
19
2.1
19
90
5
60
50
0
2
47
1.15
28816--28858
19
2.3
19
84
8
52
53
0
2
44
1.13
33333--33378
21
2.2
21
88
0
65
36
6
23
32
1.81
33341--33384
21
2.1
21
86
0
61
36
6
20
36
1.79
38382--38433
21
2.5
21
87
6
70
32
3
28
34
1.76
38403--38445
21
2.0
21
82
8
52
37
6
20
34
1.80
41219--41245
14
1.9
14
100
0
54
29
14
14
40
1.86
41301--41368
19
3.9
19
78
21
85
35
11
14
38
1.83
41322--41346
13
1.9
13
100
0
50
36
16
16
32
1.90
41303--41365
32
2.0
32
96
0
117
34
12
15
36
1.86
41408--41433
13
2.0
13
100
0
52
30
15
15
38
1.88
41388--41454
33
2.0
33
88
0
98
25
14
16
43
1.86
45177--45215
12
3.0
13
85
11
53
56
2
0
41
1.13
45178--45215
14
2.5
16
91
8
62
55
2
0
42
1.14

Tables:   1

The End!