Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold2697

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7076
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.30


Found at i:4812 original size:17 final size:17

Alignment explanation


    Indices: 4777--4823  Score: 53
    Period size: 18  Copynumber: 2.8  Consensus size: 17

       4767 AATCAAAACC

                  *          
       4777 AAAGCACAAAAAA-TGA
          1 AAAGCAAAAAAAAGTGA

                              
       4793 AAAG-AAAAAAAAGTGCA
          1 AAAGCAAAAAAAAGTG-A

                     *    
       4810 AAAGCAAAATAAAG
          1 AAAGCAAAAAAAAG

       4824 AAAAAAGAAC


Statistics
Matches: 26,  Mismatches: 2, Indels: 4
        0.81            0.06        0.12

Matches are distributed among these distances:
  15    7  0.27
  16    6  0.23
  17    5  0.19
  18    8  0.31

ACGTcount: A:0.70, C:0.09, G:0.15, T:0.06


Consensus pattern (17 bp):   
AAAGCAAAAAAAAGTGA
Done.