Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2698
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 473008
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
File 1 of 4
Found at i:6819 original size:13 final size:13
Alignment explanation
Indices: 6801--6826 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
6791 CAATTTTTTG
6801 TGTATCGATACAT
1 TGTATCGATACAT
6814 TGTATCGATACAT
1 TGTATCGATACAT
6827 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:6841 original size:32 final size:33
Alignment explanation
Indices: 6781--6844 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
6771 TACAAGCCAA
** *
6781 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
6814 TGTATCGATAC-ATACTTGGTGTATCGATACA
1 TGTATCGATACAATACTTGGTGTATCGATACA
6845 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATACAT
Found at i:7550 original size:21 final size:21
Alignment explanation
Indices: 7507--7552 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
7497 TAATTCACGC
* *
7507 ATTCTCCCCCGTTTATTAATA
1 ATTCTCCCCCGTTAATCAATA
7528 ATTCTCCCCC-TTAATCAAGTA
1 ATTCTCCCCCGTTAATCAA-TA
7549 ATTC
1 ATTC
7553 ATATCAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 6 0.27
21 16 0.73
ACGTcount: A:0.26, C:0.30, G:0.04, T:0.39
Consensus pattern (21 bp):
ATTCTCCCCCGTTAATCAATA
Found at i:9374 original size:13 final size:13
Alignment explanation
Indices: 9356--9381 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
9346 ATAATCACCC
9356 TGTATCGATACAA
1 TGTATCGATACAA
9369 TGTATCGATACAA
1 TGTATCGATACAA
9382 AGAAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:13313 original size:21 final size:21
Alignment explanation
Indices: 13284--13328 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
13274 AAGTTTTTAT
*
13284 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
13304 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
13326 TTT
1 TTT
13329 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:15566 original size:13 final size:13
Alignment explanation
Indices: 15548--15573 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15538 CAATTTTTTG
15548 TGTATCGATACAT
1 TGTATCGATACAT
15561 TGTATCGATACAT
1 TGTATCGATACAT
15574 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:15588 original size:32 final size:33
Alignment explanation
Indices: 15528--15592 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 33
15518 TACAAGCCAA
** *
15528 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
15561 TGTATCGATAC-ATACTTGGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
15593 GTTTGGCTAC
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATACAT
Found at i:16856 original size:15 final size:15
Alignment explanation
Indices: 16836--16866 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
16826 TAAAAATGTC
*
16836 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
16851 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
16866 C
1 C
16867 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:18955 original size:13 final size:13
Alignment explanation
Indices: 18937--18975 Score: 78
Period size: 13 Copynumber: 3.0 Consensus size: 13
18927 ACATTTTTCT
18937 TTGTATCGATACA
1 TTGTATCGATACA
18950 TTGTATCGATACA
1 TTGTATCGATACA
18963 TTGTATCGATACA
1 TTGTATCGATACA
18976 GGGTGATTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:19141 original size:21 final size:19
Alignment explanation
Indices: 19096--19142 Score: 51
Period size: 22 Copynumber: 2.3 Consensus size: 19
19086 AAATCTTTTG
19096 CAAAA-TACTTGTTTTTCT
1 CAAAATTACTTGTTTTTCT
19114 CTTAAAATTACTTTGTTTTTCAT
1 C--AAAATTAC-TTGTTTTTC-T
19137 CAAAAT
1 CAAAAT
19143 CAGCATCAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
18 1 0.04
20 4 0.17
21 8 0.33
22 9 0.38
23 2 0.08
ACGTcount: A:0.32, C:0.15, G:0.04, T:0.49
Consensus pattern (19 bp):
CAAAATTACTTGTTTTTCT
Found at i:21525 original size:13 final size:13
Alignment explanation
Indices: 21507--21532 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
21497 TACAGCAAGT
21507 ATGTATCGATACA
1 ATGTATCGATACA
21520 ATGTATCGATACA
1 ATGTATCGATACA
21533 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:29935 original size:24 final size:26
Alignment explanation
Indices: 29908--29957 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
29898 ATCAAAATTT
29908 TATTCAT-C-GGGGACACTCCAACCC
1 TATTCATCCAGGGGACACTCCAACCC
*
29932 TATTCCTCCGAGGGGACACTCCAACC
1 TATTCATCC-AGGGGACACTCCAACC
29958 TTGTTTTCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 6 0.27
25 1 0.05
27 15 0.68
ACGTcount: A:0.24, C:0.38, G:0.18, T:0.20
Consensus pattern (26 bp):
TATTCATCCAGGGGACACTCCAACCC
Found at i:34627 original size:28 final size:30
Alignment explanation
Indices: 34576--34631 Score: 98
Period size: 28 Copynumber: 1.9 Consensus size: 30
34566 AGGATCACCC
34576 CCCACATTTGGGGGGACAAACAAGAAAACT
1 CCCACATTTGGGGGGACAAACAAGAAAACT
34606 CCCACATTT-GGGGG-CAAACAAGAAAA
1 CCCACATTTGGGGGGACAAACAAGAAAA
34632 ATTGTCCAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
28 12 0.46
29 5 0.19
30 9 0.35
ACGTcount: A:0.41, C:0.23, G:0.23, T:0.12
Consensus pattern (30 bp):
CCCACATTTGGGGGGACAAACAAGAAAACT
Found at i:36102 original size:30 final size:30
Alignment explanation
Indices: 36043--36404 Score: 386
Period size: 31 Copynumber: 11.8 Consensus size: 30
36033 TCTCTTTTCT
*
36043 TCAAAATCCACGACTCAGTGGCAATCTCTTC
1 TCAAAGTCCACGACTCAGTGGC-ATCTCTTC
*
36074 TCAAAGTCTACGACTCAGTGGCATCTCTTC
1 TCAAAGTCCACGACTCAGTGGCATCTCTTC
* * *
36104 -CTAAAGTCCATGACTTAGTGGCATCTTTTC
1 TC-AAAGTCCACGACTCAGTGGCATCTCTTC
* * * *
36134 TTCAAAATCCACGACTCAGTGACGTCTCTTT
1 -TCAAAGTCCACGACTCAGTGGCATCTCTTC
* *
36165 TCTAAGTCCACGACTCAGTGGCATCTTTTTTC
1 TCAAAGTCCACGACTCAGTGGCATC--TCTTC
* * *
36197 TTCAAATTCCATGACTTAGTGGCAATCTCTTC
1 -TCAAAGTCCACGACTCAGTGGC-ATCTCTTC
*
36229 TTAAAGTCCACGACTCAGTGGCATCTCTTC
1 TCAAAGTCCACGACTCAGTGGCATCTCTTC
* *
36259 TCAAAGTCCACAACTCAGTGGCATCTTTTC
1 TCAAAGTCCACGACTCAGTGGCATCTCTTC
* * *
36289 TTCAAAGTCCACTACTTAGTAGCAATCTCTTC
1 -TCAAAGTCCACGACTCAGTGGC-ATCTCTTC
*
36321 TCAATGTCCACGACTCAGTGGCATCT-TGTC
1 TCAAAGTCCACGACTCAGTGGCATCTCT-TC
* *
36351 CCAAAGTCCACGACTCAGTGGCAATCTCTTT
1 TCAAAGTCCACGACTCAGTGGC-ATCTCTTC
* *
36382 TCAAAGTCCACAACTCTGTGGCA
1 TCAAAGTCCACGACTCAGTGGCA
36405 CCCTTTTAAG
Statistics
Matches: 274, Mismatches: 45, Indels: 25
0.80 0.13 0.07
Matches are distributed among these distances:
29 2 0.01
30 115 0.42
31 120 0.44
32 16 0.06
33 18 0.07
34 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.15, T:0.31
Consensus pattern (30 bp):
TCAAAGTCCACGACTCAGTGGCATCTCTTC
Found at i:36139 original size:61 final size:61
Alignment explanation
Indices: 36049--36404 Score: 389
Period size: 61 Copynumber: 5.8 Consensus size: 61
36039 TTCTTCAAAA
*
36049 TCCACGACTCAGTGGCAATCTCTTCTCAAAGTCTACGACTCAGTGGCATCTCTTCCTAAAG
1 TCCACGACTCAGTGGCAATCTCTTCTCAAAGTCCACGACTCAGTGGCATCTCTTCCTAAAG
* * * * * * *
36110 TCCATGACTTAGTGGC-ATCTTTTCTTCAAAATCCACGACTCAGTGACGTCTCTTTTCT-AAG
1 TCCACGACTCAGTGGCAATCTCTTC-TCAAAGTCCACGACTCAGTGGCATCTC-TTCCTAAAG
* * * * *
36171 TCCACGACTCAGTGGC-ATCTTTTTTCTTCAAATTCCATGACTTAGTGGCAATCTCTTCTTAAAG
1 TCCACGACTCAGTGGCAATC--TCTTC-TCAAAGTCCACGACTCAGTGGC-ATCTCTTCCTAAAG
* * *
36235 TCCACGACTCAGTGGC-ATCTCTTCTCAAAGTCCACAACTCAGTGGCATCTTTTCTTCAAAG
1 TCCACGACTCAGTGGCAATCTCTTCTCAAAGTCCACGACTCAGTGGCATCTCTTCCT-AAAG
* * * * *
36296 TCCACTACTTAGTAGCAATCTCTTCTCAATGTCCACGACTCAGTGGCATCT-TGTCCCAAAG
1 TCCACGACTCAGTGGCAATCTCTTCTCAAAGTCCACGACTCAGTGGCATCTCT-TCCTAAAG
* * *
36357 TCCACGACTCAGTGGCAATCTCTTTTCAAAGTCCACAACTCTGTGGCA
1 TCCACGACTCAGTGGCAATCTCTTCTCAAAGTCCACGACTCAGTGGCA
36405 CCCTTTTAAG
Statistics
Matches: 249, Mismatches: 37, Indels: 18
0.82 0.12 0.06
Matches are distributed among these distances:
60 16 0.06
61 138 0.55
62 42 0.17
63 27 0.11
64 26 0.10
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.31
Consensus pattern (61 bp):
TCCACGACTCAGTGGCAATCTCTTCTCAAAGTCCACGACTCAGTGGCATCTCTTCCTAAAG
Found at i:36392 original size:92 final size:92
Alignment explanation
Indices: 36043--36391 Score: 447
Period size: 92 Copynumber: 3.8 Consensus size: 92
36033 TCTCTTTTCT
* * *
36043 TCAAAATCCACGACTCAGTGGCAATCTCTTCTCAAAGTCTACGACTCAGTGGCATCTCTTCCT-A
1 TCAAAGTCCACGACTCAGTGGC-ATCTCTTCTCAAAGTCCACGACTCAGTGGCATCTCTTCTTCA
*
36107 AAGTCCATGACTTAGTGGC-ATCTTTTC
65 AAGTCCATGACTTAGTGGCAATCTCTTC
* * * * * *
36134 TTCAAAATCCACGACTCAGTGACGTCTCTTTTCTAAGTCCACGACTCAGTGGCATCTTTTTTCTT
1 -TCAAAGTCCACGACTCAGTGGCATCTCTTCTCAAAGTCCACGACTCAGTGGCATC--TCTTCTT
*
36199 CAAATTCCATGACTTAGTGGCAATCTCTTC
63 CAAAGTCCATGACTTAGTGGCAATCTCTTC
* * *
36229 TTAAAGTCCACGACTCAGTGGCATCTCTTCTCAAAGTCCACAACTCAGTGGCATCTTTTCTTCAA
1 TCAAAGTCCACGACTCAGTGGCATCTCTTCTCAAAGTCCACGACTCAGTGGCATCTCTTCTTCAA
*
36294 AGTCCACT-ACTTAGTAGCAATCTCTTC
66 AGTCCA-TGACTTAGTGGCAATCTCTTC
* *
36321 TCAATGTCCACGACTCAGTGGCATCT-TGTCCCAAAGTCCACGACTCAGTGGCAATCTCTT-TTC
1 TCAAAGTCCACGACTCAGTGGCATCTCT-TCTCAAAGTCCACGACTCAGTGGC-ATCTCTTCTTC
36384 AAAGTCCA
64 AAAGTCCA
36392 CAACTCTGTG
Statistics
Matches: 227, Mismatches: 23, Indels: 14
0.86 0.09 0.05
Matches are distributed among these distances:
91 30 0.13
92 111 0.49
93 12 0.05
94 67 0.30
95 7 0.03
ACGTcount: A:0.25, C:0.29, G:0.15, T:0.32
Consensus pattern (92 bp):
TCAAAGTCCACGACTCAGTGGCATCTCTTCTCAAAGTCCACGACTCAGTGGCATCTCTTCTTCAA
AGTCCATGACTTAGTGGCAATCTCTTC
Found at i:36444 original size:61 final size:60
Alignment explanation
Indices: 36377--36525 Score: 196
Period size: 61 Copynumber: 2.5 Consensus size: 60
36367 AGTGGCAATC
36377 TCTTTTCAAAGTCCACAACTCTGTGGCACCCTTTTAAGCCCACAACTAC-ATGGCATTCTTTT
1 TCTTTTC-AAGTCCACAACTCTGTGGCACCCTTTTAAGCCCACAACT-CTATGGCA-TCTTTT
* **
36439 T-TTTTCTAAGTCCATAACTCTGTGGCACCCTTTTAAGTTCACAACTCTATGGCATCTTTT
1 TCTTTTC-AAGTCCACAACTCTGTGGCACCCTTTTAAGCCCACAACTCTATGGCATCTTTT
*
36499 TCCTTTT-AAGTCCACAACTCCGTGGCA
1 T-CTTTTCAAGTCCACAACTCTGTGGCA
36526 TATTTTTCCT
Statistics
Matches: 78, Mismatches: 6, Indels: 8
0.85 0.07 0.09
Matches are distributed among these distances:
60 26 0.33
61 47 0.60
62 5 0.06
ACGTcount: A:0.23, C:0.29, G:0.12, T:0.36
Consensus pattern (60 bp):
TCTTTTCAAGTCCACAACTCTGTGGCACCCTTTTAAGCCCACAACTCTATGGCATCTTTT
Found at i:36504 original size:33 final size:33
Alignment explanation
Indices: 36406--37243 Score: 758
Period size: 33 Copynumber: 25.9 Consensus size: 33
36396 TCTGTGGCAC
* * *
36406 CCTTTTAAGCCCACAACTACATGGCATTCTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCA-TCTTTTT
* * *
36440 -TTTTCTAAGTCCATAACTCTGTGGCA-C-----
1 CCTTT-TAAGTCCACAACTCCGTGGCATCTTTTT
* **
36467 CCTTTTAAGTTCACAACTCTATGGCATCTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCATCTTTTT
*
36500 CCTTTTAAGTCCACAACTCCGTGGCATATTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCATCTTTTT
*
36533 CCTTTTAAGTCCACAACTCCATGGCA-C-----
1 CCTTTTAAGTCCACAACTCCGTGGCATCTTTTT
* *
36560 CCTTTTAAGTCCACAACTCCGTGG-AACATTTT
1 CCTTTTAAGTCCACAACTCCGTGGCATCTTTTT
* * * *
36592 CTTTTTAAGTCCATAACTCCGTGGCACCTTGTT
1 CCTTTTAAGTCCACAACTCCGTGGCATCTTTTT
* * *
36625 CCTTTTACGTCCATAACTCCGTGGCA-CATTTT
1 CCTTTTAAGTCCACAACTCCGTGGCATCTTTTT
* * * * * * *
36657 CTTTTTAAATCTACGACTTCGTGGTACTCTTTTC
1 CCTTTTAAGTCCACAACTCCGTGGCA-TCTTTTT
* * *
36691 CCTTTTAAGTCCACAACTCTC-TGGTACCTTGTT
1 CCTTTTAAGTCCACAACTC-CGTGGCATCTTTTT
* * *
36724 CCTTTTAAGTCCACAAATCCGTGGCACCTTGTT
1 CCTTTTAAGTCCACAACTCCGTGGCATCTTTTT
* *
36757 CCTTTTAAGTCCACAACTCCATGGTA-C-----
1 CCTTTTAAGTCCACAACTCCGTGGCATCTTTTT
*
36784 CCTTTTAAGTCCACAACTCCGTGGCA-CCTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCATCTTTTT
* * * ** *
36816 CTTTTTAAGTCCATAACTTCGTGGTGTTCTTTTC
1 CCTTTTAAGTCCACAACTCCGTGG-CATCTTTTT
*
36850 CCTTTTAAGTCCACAACTCCATGGCATCTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCATCTTTTT
36883 CCTTTTAAGTCCACAACTCCGTGGCATCTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCATCTTTTT
* *
36916 CCTTTTAAGTCCATAACTCCGTGGCA-CCTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCATCTTTTT
* ** * *
36948 CTTTTTAAGTCCACAACTCCACGGCACCTTGTT
1 CCTTTTAAGTCCACAACTCCGTGGCATCTTTTT
* * * *
36981 CCTTTTACGTCCATAACTCCATGGCA-CCTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCATCTTTTT
* ** *
37013 CTTTTTAAGTCCATGACTCTGTGGCATTCTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCA-TCTTTTT
* *
37047 CCTTTTAAGTCCACAACTCCGTGGCACCTTATT
1 CCTTTTAAGTCCACAACTCCGTGGCATCTTTTT
*
37080 CCTTTTAAGTCCACAACTCCGTGGCA-CCTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCATCTTTTT
* * *
37112 CTTTTTAAGTCCACGACTCTGTGGCATTCTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCA-TCTTTTT
37146 CCTTTTAAGTCCACAACTCCGTGGCATCTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCATCTTTTT
* * * *
37179 CCTTTTAAGCCCATAACTTCGTGGCATCCCTCTTT
1 CCTTTTAAGTCCACAACTCCGTGGCAT--CTTTTT
* * * *
37214 CC-TGTAAGTCCATAACTCCTTGGCACCTTT
1 CCTTTTAAGTCCACAACTCCGTGGCATCTTT
37244 AAGTCCAATA
Statistics
Matches: 660, Mismatches: 111, Indels: 68
0.79 0.13 0.08
Matches are distributed among these distances:
26 1 0.00
27 67 0.10
28 4 0.01
32 150 0.23
33 293 0.44
34 137 0.21
35 8 0.01
ACGTcount: A:0.20, C:0.30, G:0.12, T:0.38
Consensus pattern (33 bp):
CCTTTTAAGTCCACAACTCCGTGGCATCTTTTT
Found at i:37401 original size:39 final size:39
Alignment explanation
Indices: 37342--37506 Score: 159
Period size: 39 Copynumber: 4.0 Consensus size: 39
37332 ACCTTGTCTC
*
37342 TAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCA
1 TAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCA
* *
37381 TAAGCCCAATATCGTTGGCCTTGAATCAGCATATTGGCA
1 TAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCA
* * *
37420 CCTTGTCTTTAAGACCAATGTCTCTGGCCTTGAATCAGCACATTGGCA
1 ---------TAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCA
* * * *
37468 CAAGCCCAATATCGCTAGACTTGAATCAGCATATTGGCA
1 TAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCA
37507 CCTTCATCTT
Statistics
Matches: 102, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
39 68 0.67
48 34 0.33
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (39 bp):
TAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCA
Found at i:37447 original size:87 final size:87
Alignment explanation
Indices: 37299--37653 Score: 395
Period size: 87 Copynumber: 3.9 Consensus size: 87
37289 CATCTTGAGT
* * * *
37299 CCAATATTGCTGGCCTTGAACCAGCGTATTGGCACCTTGTCTCTAAGACCAATGTCGCTGGCCTT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTT
*
37364 GAATCAGCATATTGGCATAAGC
66 GAATCAGCATATTGGCACAAGC
* *
37386 CCAATATCGTTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCTCTGGCCTT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTT
*
37451 GAATCAGCACATTGGCACAAGC
66 GAATCAGCATATTGGCACAAGC
* * * * *
37473 CCAATATCGCTAGACTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-GTCTTTAAGACCAATGTCGCTGGCCT
*
37538 TGAATCAGCATATTGGCACCGTCATCTTTAAGA
65 TGAATCAGCATATT-G----G-CA-C---AAGC
* * * * * ** * *
37571 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTTTAAGTCTGATATCGTTGGCCT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-GTCTTTAAGACCAATGTCGCTGGCCT
37636 TGAATCAGCATATTGGCA
65 TGAATCAGCATATTGGCA
37654 TCTTTAACAT
Statistics
Matches: 232, Mismatches: 25, Indels: 17
0.85 0.09 0.06
Matches are distributed among these distances:
87 114 0.49
88 35 0.15
89 1 0.00
92 2 0.01
93 2 0.01
94 2 0.01
95 1 0.00
97 1 0.00
98 74 0.32
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (87 bp):
CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTT
GAATCAGCATATTGGCACAAGC
Found at i:37545 original size:49 final size:49
Alignment explanation
Indices: 37473--37781 Score: 282
Period size: 49 Copynumber: 6.2 Consensus size: 49
37463 TGGCACAAGC
* * *
37473 CCAATATCGCTAGACTTGAATCAGCATATTGGCACCTTCATCTTTAAGT
1 CCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGT
* * *
37522 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCGTCATCTTTAAGA
1 CCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGT
* *
37571 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTTTAAGT
1 CCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGT
** * * * * *
37620 CTGATATCGTTGGCCTTGAATCAGCATATTGGCATCTTTAACATTCCTT-AGC
1 CCAATATCGCTGGCCTTGAATCAGCACATTGGCA-CCTT--CA-TCTTTAAGT
* * ** * * *
37672 CCAATGTCGTTGGCCTTGTCTCAGCACATTGGCA--TTCTTCTTCAATT
1 CCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGT
** * * * *
37719 TTAATATCGCTGGCCTTGAATCAGCACATTGTCATTCTTCGCATCTTCAAGC
1 CCAATATCGCTGGCCTTGAATCAGCACATTGGCA-CCTT--CATCTTTAAGT
37771 CCAATATCGCT
1 CCAATATCGCT
37782 AGCCGTAAAT
Statistics
Matches: 209, Mismatches: 41, Indels: 17
0.78 0.15 0.06
Matches are distributed among these distances:
46 3 0.01
47 29 0.14
49 120 0.57
50 4 0.02
52 49 0.23
53 4 0.02
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.34
Consensus pattern (49 bp):
CCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGT
Found at i:37642 original size:98 final size:99
Alignment explanation
Indices: 37473--37749 Score: 319
Period size: 98 Copynumber: 2.8 Consensus size: 99
37463 TGGCACAAGC
* * * * *
37473 CCAATATCGCTAGACTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCT
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-CTTCATCTTTAAGTCTAATATCGCTGGCCT
*
37538 TGAATCAGCATATTGGCA-CCGT-CA-TCTTTAAGA
65 TGAATCAGCATATTGGCATCCGTACATTCCTT-AGA
* *
37571 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTTTAAGTCTGATATCGTTGGCCT
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-CTTCATCTTTAAGTCTAATATCGCTGGCCT
** *
37636 TGAATCAGCATATTGGCATCTTTAACATTCCTTAGC
65 TGAATCAGCATATTGGCATCCGT-ACATTCCTTAGA
* ** * * * *
37672 CCAATGTCGTTGGCCTTGTCTCAGCACATTGGCA-TTCTTCTTCAATTTTAATATCGCTGGCCTT
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTCATCTTTAAGTCTAATATCGCTGGCCTT
*
37736 GAATCAGCACATTG
66 GAATCAGCATATTG
37750 TCATTCTTCG
Statistics
Matches: 153, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
98 75 0.49
99 39 0.25
101 35 0.23
102 4 0.03
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.34
Consensus pattern (99 bp):
CCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTCATCTTTAAGTCTAATATCGCTGGCCTT
GAATCAGCATATTGGCATCCGTACATTCCTTAGA
Found at i:38993 original size:13 final size:13
Alignment explanation
Indices: 38975--38999 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
38965 ACATAAGTGT
38975 TGTATCGATACAA
1 TGTATCGATACAA
38988 TGTATCGATACA
1 TGTATCGATACA
39000 TAAGCTACTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:39066 original size:13 final size:13
Alignment explanation
Indices: 39048--39075 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
39038 CATTATTCAA
39048 TGTATCGATACAT
1 TGTATCGATACAT
39061 TGTATCGATACAT
1 TGTATCGATACAT
39074 TG
1 TG
39076 ATTTTTGCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:39088 original size:33 final size:33
Alignment explanation
Indices: 39028--39093 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
39018 GCCAAGGAAA
*
39028 TGTATCGATACATTATTCAATGTATCGATACAT
1 TGTATCGATACATTATTCAATGCATCGATACAT
**
39061 TGTATCGATACATTGATT-TTTGCATCGATACAT
1 TGTATCGATACATT-ATTCAATGCATCGATACAT
39094 CTGGGAAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 26 0.90
34 3 0.10
ACGTcount: A:0.30, C:0.15, G:0.14, T:0.41
Consensus pattern (33 bp):
TGTATCGATACATTATTCAATGCATCGATACAT
Found at i:45544 original size:52 final size:52
Alignment explanation
Indices: 45488--45612 Score: 207
Period size: 52 Copynumber: 2.4 Consensus size: 52
45478 CACTGATCTT
*
45488 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTA-TAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
*
45539 GTGTATCGATACATGCAGGAAAATTTGCCCAGATGTATCGATACACTATTAAA
1 -TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
*
45592 TGTATCGATACATGCAAGCAA
1 TGTATCGATACATGCAGGCAA
45613 CTTTTCATAT
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
52 64 0.94
53 4 0.06
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
Found at i:53829 original size:31 final size:31
Alignment explanation
Indices: 53788--54137 Score: 236
Period size: 31 Copynumber: 11.2 Consensus size: 31
53778 CTTCAAATAC
* *
53788 CTTCTTAAAGTCCATGACTCCGTGGCACCTT
1 CTTCTCAAAGTCCACGACTCCGTGGCACCTT
*
53819 CTTCTCAAAGTCCACGACTCAGTGGCATCCTT
1 CTTCTCAAAGTCCACGACTCCGTGGCA-CCTT
** *
53851 -TTCTTCAAAGTCCACGACTCAATGGCA-ATCT
1 CTTC-TCAAAGTCCACGACTCCGTGGCACCT-T
*
53882 CTGCTCAAAGTCCACGACTCCGTGGCACCTTT
1 CTTCTCAAAGTCCACGACTCCGTGGCACC-TT
* *
53914 CTT-TCAAAGCCCACAACTCCGTGGCACTCTT
1 CTTCTCAAAGTCCACGACTCCGTGGCAC-CTT
* *
53945 TTTCCCTTTTAAAGTCCACGACTCCGTGGCACCTT
1 CTT--C--TCAAAGTCCACGACTCCGTGGCACCTT
* * *
53980 CTTTTCAAAGCCCACAACTCCGTGGCACC--
1 CTTCTCAAAGTCCACGACTCCGTGGCACCTT
* * * *
54009 CTT-T-TAAGCCCACAACTCCGTGGCACTTT
1 CTTCTCAAAGTCCACGACTCCGTGGCACCTT
* * *
54038 TTTCATCTTTAAGTCCACAACTCCGTGGCACC--
1 CTTC-TC--AAAGTCCACGACTCCGTGGCACCTT
* * *
54070 CTTCT--AAGCCCACAACTCCGTGGCACTTT
1 CTTCTCAAAGTCCACGACTCCGTGGCACCTT
* * *
54099 TTTCATCTTTAAGTCCACAACTCCGTGGCACCTT
1 CTTC-TC--AAAGTCCACGACTCCGTGGCACCTT
*
54133 TTTCT
1 CTTCT
54138 TTTTAAAGCC
Statistics
Matches: 261, Mismatches: 32, Indels: 50
0.76 0.09 0.15
Matches are distributed among these distances:
27 41 0.16
28 1 0.00
29 8 0.03
30 2 0.01
31 99 0.38
32 35 0.13
33 2 0.01
34 47 0.18
35 5 0.02
36 21 0.08
ACGTcount: A:0.21, C:0.35, G:0.14, T:0.30
Consensus pattern (31 bp):
CTTCTCAAAGTCCACGACTCCGTGGCACCTT
Found at i:54056 original size:34 final size:33
Alignment explanation
Indices: 53920--54231 Score: 260
Period size: 34 Copynumber: 9.6 Consensus size: 33
53910 CTTTCTTTCA
*
53920 AAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
1 AAGCCCACAACTCCGTGGCACT-TTTTTCTC-TTT
* * * *
53955 AAAGTCCACGACTCCGTGGCACCTTCTTT-TC--A
1 -AAGCCCACAACTCCGTGGCA-CTTTTTTCTCTTT
*
53987 AAGCCCACAACTCCGTGGCAC-----CCT-TTT
1 AAGCCCACAACTCCGTGGCACTTTTTTCTCTTT
54014 AAGCCCACAACTCCGTGGCACTTTTTTCATCTTT
1 AAGCCCACAACTCCGTGGCACTTTTTTC-TCTTT
*
54048 AAGTCCACAACTCCGTGGCAC------C-CTTCT
1 AAGCCCACAACTCCGTGGCACTTTTTTCTCTT-T
54075 AAGCCCACAACTCCGTGGCACTTTTTTCATCTTT
1 AAGCCCACAACTCCGTGGCACTTTTTTC-TCTTT
* * *
54109 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
1 AAGCCCACAACTCCGTGGCACTTTTTTCTCTTT
* * *
54142 AAAGCCCACAACTCCATGGCACCTTTTTCTTTTT
1 -AAGCCCACAACTCCGTGGCACTTTTTTCTCTTT
* * * *
54176 AAAGCCCACAGCTCTGTGGCACTCTTTTCCCGTTT
1 -AAGCCCACAACTCCGTGGCACTTTTTTCTC-TTT
*
54211 AAGCTCACAACTCCGTGGCAC
1 AAGCCCACAACTCCGTGGCAC
54232 CCTTTTAAGT
Statistics
Matches: 227, Mismatches: 27, Indels: 46
0.76 0.09 0.15
Matches are distributed among these distances:
26 4 0.02
27 42 0.19
28 1 0.00
30 1 0.00
31 18 0.08
32 1 0.00
33 6 0.03
34 123 0.54
35 7 0.03
36 22 0.10
37 2 0.01
ACGTcount: A:0.21, C:0.35, G:0.13, T:0.31
Consensus pattern (33 bp):
AAGCCCACAACTCCGTGGCACTTTTTTCTCTTT
Found at i:54063 original size:61 final size:61
Alignment explanation
Indices: 53991--54203 Score: 275
Period size: 61 Copynumber: 3.4 Consensus size: 61
53981 TTTTCAAAGC
53991 CCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACTTTTTTCATCTTTAAGT
1 CCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACTTTTTTCATCTTTAAGT
*
54052 CCACAACTCCGTGGCACCCTTCTAAGCCCACAACTCCGTGGCACTTTTTTCATCTTTAAGT
1 CCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACTTTTTTCATCTTTAAGT
* * *
54113 CCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCATGGCACCTTTTTC-TTTTTA
1 CCACAACTCCGTGGCACC-----C-TTTT-AAGCCCACAACTCCGTGGCACTTTTTTCATCTTT-
*
54177 AAGC
58 AAGT
* * *
54181 CCACAGCTCTGTGGCACTCTTTT
1 CCACAACTCCGTGGCACCCTTTT
54204 CCCGTTTAAG
Statistics
Matches: 135, Mismatches: 9, Indels: 15
0.85 0.06 0.09
Matches are distributed among these distances:
61 78 0.58
62 4 0.03
63 1 0.01
66 1 0.01
67 7 0.05
68 44 0.33
ACGTcount: A:0.21, C:0.34, G:0.13, T:0.32
Consensus pattern (61 bp):
CCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACTTTTTTCATCTTTAAGT
Found at i:54135 original size:95 final size:90
Alignment explanation
Indices: 53886--54356 Score: 309
Period size: 95 Copynumber: 5.0 Consensus size: 90
53876 CAATCTCTGC
* * * *
53886 TCAAAGTCCACGACTCCGTGGCACCTTTCTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TCAAAGCCCACAACTCCGTGGCACC-AT-TTT--AAGCCCACAACTCCGTGGCAC-CTTTTTCTC
*
53951 TTTTAAAGTCCACGACTCCGTGGCACCTTCTTT
61 -TTTAAAGTCCACAACTCCGTGGCACC-TC-TT
* *
53984 TCAAAGCCCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACTTTTTTCATCTTT-
1 TCAAAGCCCACAACTCCGTGGCACCATTTTAAGCCCACAACTCCGTGGCACCTTTTTC-TCTTTA
54048 AAGTCCACAACTCCGTGGCACC-C-T
65 AAGTCCACAACTCCGTGGCACCTCTT
* *
54072 TCTAAGCCCACAACTCCGTGGCACTTTTTTCATCTTTAAGTCCACAACTCCGTGGCACCTTTTTC
1 TCAAAGCCCACAACTCCGTGGCAC------CAT-TTTAAGCCCACAACTCCGTGGCACCTTTTTC
* * *
54137 TTTTTAAAGCCCACAACTCCATGGCACCTTTTTCTTT
59 TCTTTAAAGTCCACAACTCCGTGGCACC----TC-TT
* * * * *
54174 TTAAAGCCCACAGCTCTGTGGCACTCTTTTCCCGTTTAAGCTCACAACTCCGTGGCACC-----C
1 TCAAAGCCCACAACTCCGTGGCAC-C--AT----TTTAAGCCCACAACTCCGTGGCACCTTTTTC
* *
54234 T-TTT-AAGTCCACAACTCAGTGGCACCTTCTCA
59 TCTTTAAAGTCCACAACTCCGTGGCACC-TCT-T
* * * * ** *
54266 TCAAAGTCCACAACTTCGTGGCACCCTTTTAAAACCCACAACTTTGTGGCACTCGTTTTC-CTTT
1 TCAAAGCCCACAACTCCGTGGCACCATTTT-AAGCCCACAACTCCGTGGCAC-CTTTTTCTCTTT
* * *
54330 TAAGTCCACGACTCTGTGGCACC-CTT
64 AAAGTCCACAACTCCGTGGCACCTCTT
54356 T
1 T
54357 TTTCCTTTAA
Statistics
Matches: 304, Mismatches: 38, Indels: 70
0.74 0.09 0.17
Matches are distributed among these distances:
85 3 0.01
86 17 0.06
87 1 0.00
88 24 0.08
89 1 0.00
90 2 0.01
91 4 0.01
92 47 0.15
93 29 0.10
94 28 0.09
95 68 0.22
96 6 0.02
97 5 0.02
98 23 0.08
99 1 0.00
100 1 0.00
102 44 0.14
ACGTcount: A:0.21, C:0.34, G:0.14, T:0.31
Consensus pattern (90 bp):
TCAAAGCCCACAACTCCGTGGCACCATTTTAAGCCCACAACTCCGTGGCACCTTTTTCTCTTTAA
AGTCCACAACTCCGTGGCACCTCTT
Found at i:54231 original size:163 final size:155
Alignment explanation
Indices: 53889--54295 Score: 443
Period size: 163 Copynumber: 2.6 Consensus size: 155
53879 TCTCTGCTCA
* * *
53889 AAGTCCACGACTCCGTGGCACCTTTCTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTC-CCTT
1 AAGTCCACAACTCCGTGGCACC---C-TTCTAAGCCCACAACTCCGTGGCACT-TTTTTCATC-T
* *
53953 TTAAAGTCCACGACTCCGTGGCACC--TTCTTTTCAAAGCCCACAACTCCGTGGCACCCTTTTAA
60 TT-AAGTCCACAACTCCGTGGCACCTTTTCTTTTCAAAGCCCACAACTCCATGGCACCCTTTTAA
* *
54016 GCCCACAACTCCGTGGCACTTTTTTCATCTTT
124 GCCCACAACTCCGTGGCACTCTTTTCACCTTT
54048 AAGTCCACAACTCCGTGGCACCCTTCTAAGCCCACAACTCCGTGGCACTTTTTTCATCTTTAAGT
1 AAGTCCACAACTCCGTGGCACCCTTCTAAGCCCACAACTCCGTGGCACTTTTTTCATCTTTAAGT
*
54113 CCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCATGGCACCTTTTTCTTTTTAA
66 CCACAACTCCGTGGCACC-TTTTCTTTTCAAAGCCCACAACTCCATGGCACC-----C-TTTT-A
* *
54178 AGCCCACAGCTCTGTGGCACTCTTTTC-CCGTTT
123 AGCCCACAACTCCGTGGCACTCTTTTCACC-TTT
* * * * * *
54211 AAG-CTCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCAGTGGCAC-CTTCTCATC--AAAG
1 AAGTC-CACAACTCCGTGGCACCCTTCTAAGCCCACAACTCCGTGGCACTTTTTTCATCTTTAAG
*
54272 TCCACAACTTCGTGGCACCCTTTT
65 TCCACAACTCCGTGGCA-CCTTTT
54296 AAAACCCACA
Statistics
Matches: 217, Mismatches: 17, Indels: 27
0.83 0.07 0.10
Matches are distributed among these distances:
153 21 0.10
154 9 0.04
155 26 0.12
156 30 0.14
159 21 0.10
160 23 0.11
161 3 0.01
162 13 0.06
163 71 0.33
ACGTcount: A:0.21, C:0.35, G:0.14, T:0.30
Consensus pattern (155 bp):
AAGTCCACAACTCCGTGGCACCCTTCTAAGCCCACAACTCCGTGGCACTTTTTTCATCTTTAAGT
CCACAACTCCGTGGCACCTTTTCTTTTCAAAGCCCACAACTCCATGGCACCCTTTTAAGCCCACA
ACTCCGTGGCACTCTTTTCACCTTT
Found at i:54417 original size:33 final size:32
Alignment explanation
Indices: 53889--54418 Score: 214
Period size: 34 Copynumber: 16.6 Consensus size: 32
53879 TCTCTGCTCA
* *
53889 AAGTCCACGACTCCGTGGCAC-C-TTT-CTTTCA
1 AAGTCCACAACT-CGTGGCACTCTTTTCCTTT-T
*
53920 AAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
1 AAGTCCACAACT-CGTGGCACTC-TTTT-CCTTTT
*
53955 AAAGTCCACGACTCCGTGGCAC-C--TT-CTTTT
1 -AAGTCCACAACT-CGTGGCACTCTTTTCCTTTT
*
53985 CAAAGCCCACAACTCCGTGGCA--C----CCTTTT
1 --AAGTCCACAACT-CGTGGCACTCTTTTCCTTTT
* * *
54014 AAGCCCACAACTCCGTGGCACTTTTTTCATCTTT
1 AAGTCCACAACT-CGTGGCACTCTTTTCCT-TTT
*
54048 AAGTCCACAACTCCGTGGCA--C----CCTTCT
1 AAGTCCACAACT-CGTGGCACTCTTTTCCTTTT
* * *
54075 AAGCCCACAACTCCGTGGCACTTTTTTCATCTTT
1 AAGTCCACAACT-CGTGGCACTCTTTTCCT-TTT
*
54109 AAGTCCACAACTCCGTGGCAC-CTTTTTCTTTTT
1 AAGTCCACAACT-CGTGGCACTC-TTTTCCTTTT
* * *
54142 AAAGCCCACAACTCCATGGCAC-CTTTTTCTTTTT
1 -AAGTCCACAACT-CGTGGCACTC-TTTTCCTTTT
* * *
54176 AAAGCCCACAGCTCTGTGGCACTCTTTTCCCGTTT
1 -AAGTCCACAACTC-GTGGCACTCTTTT-CCTTTT
54211 AAG-CTCACAACTCCGTGGCA--C----CCTTTT
1 AAGTC-CACAACT-CGTGGCACTCTTTTCCTTTT
* * **
54238 AAGTCCACAACTCAGTGGCAC-CTTCT-CATCA
1 AAGTCCACAACTC-GTGGCACTCTTTTCCTTTT
54269 AAGTCCACAACTTCGTGGCA--C----CCTTTT
1 AAGTCCACAAC-TCGTGGCACTCTTTTCCTTTT
** *
54296 AAAACCCACAACTTTGTGGCACTCGTTTTCCTTTT
1 -AAGTCCACAAC-TCGTGGCACTC-TTTTCCTTTT
* * *
54331 AAGTCCACGACTCTGTGGCACCCTTTTTTCCTTTA
1 AAGTCCACAACTC-GTGGCA--CTCTTTTCCTTTT
*
54366 AAGCCCACAACTACGTGGCACTCTTTTCCTTTT
1 AAGTCCACAACT-CGTGGCACTCTTTTCCTTTT
*
54399 AAGTCCACAAGTCGGTGGCA
1 AAGTCCACAACTC-GTGGCA
54419 ACCATTCTCT
Statistics
Matches: 399, Mismatches: 49, Indels: 100
0.73 0.09 0.18
Matches are distributed among these distances:
26 1 0.00
27 64 0.16
28 21 0.05
29 5 0.01
30 8 0.02
31 57 0.14
32 7 0.02
33 37 0.09
34 135 0.34
35 38 0.10
36 26 0.07
ACGTcount: A:0.21, C:0.34, G:0.14, T:0.31
Consensus pattern (32 bp):
AAGTCCACAACTCGTGGCACTCTTTTCCTTTT
Found at i:54517 original size:49 final size:49
Alignment explanation
Indices: 54464--55115 Score: 937
Period size: 49 Copynumber: 13.6 Consensus size: 49
54454 CCTTCTAACC
* *
54464 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGT
1 CCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGT
*
54513 CCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C-T-TTTAAGC
1 CCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGT
* *
54556 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGT
1 CCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGT
*
54605 CCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGT
1 CCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGT
54654 CCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGT
1 CCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGT
* * *
54697 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGT
1 CCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGT
* * *
54746 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGT
1 CCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGT
* * *
54795 CCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGT
1 CCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGT
* * *
54844 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGT
1 CCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGT
*
54893 CCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGT
1 CCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGT
*
54942 CCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TCACCTTTAAGT
1 CCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGT
54990 CCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGT
1 CCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGT
* *
55033 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGT
1 CCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC--TT-CATCTTTAAGT
*
55085 TCAATGTAGCTGGCCTTGAATCAGCACATTG
1 CCAATGTAGCTGGCCTTGAATCAGCACATTG
55116 ACATCCTTTT
Statistics
Matches: 546, Mismatches: 36, Indels: 39
0.88 0.06 0.06
Matches are distributed among these distances:
43 117 0.21
44 1 0.00
45 3 0.01
47 2 0.00
48 46 0.08
49 340 0.62
50 1 0.00
52 36 0.07
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (49 bp):
CCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGT
Found at i:54718 original size:141 final size:141
Alignment explanation
Indices: 54464--55124 Score: 1019
Period size: 141 Copynumber: 4.6 Consensus size: 141
54454 CCTTCTAACC
54464 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCT
1 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCT
* *
54529 TGAATCAGCACATTGGCACTTTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTT
66 TGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTT
54594 CATCTTTAAGT
131 CATCTTTAAGT
*
54605 CCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCT
1 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCT
*
54670 TGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT
66 TGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTT
54735 CATCTTTAAGT
131 CATCTTTAAGT
*
54746 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCT
1 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCT
*
54811 TGACTCAGCACATTGGCACCTTCACCATTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGG
66 TGAATCAGCACATTGGCACC-T-----TTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGG
*
54876 CACCTTTATCTTTAAGT
125 CACCTTCATCTTTAAGT
* * *
54893 CCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCT
1 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCT
* *
54958 TGAATCAGCACATTGGCACCTCACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGC
66 TGAATCAGCACATTGG-----CACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGC
55023 A----C--CTTTAAGT
126 ACCTTCATCTTTAAGT
*
55033 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGG
1 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CATCTTTAAGTCCAATGTAGCTGG
*
55098 CCTTGAATCAGCACATTGACATCCTTT
63 CCTTGAATCAGCACATTGGCA-CCTTT
55125 TTCTCATTTT
Statistics
Matches: 483, Mismatches: 22, Indels: 32
0.90 0.04 0.06
Matches are distributed among these distances:
138 2 0.00
139 5 0.01
140 41 0.08
141 219 0.45
142 3 0.01
143 41 0.08
146 38 0.08
147 129 0.27
151 1 0.00
152 4 0.01
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (141 bp):
CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCT
TGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTT
CATCTTTAAGT
Found at i:55103 original size:52 final size:53
Alignment explanation
Indices: 55025--55146 Score: 165
Period size: 52 Copynumber: 2.3 Consensus size: 53
55015 ACATTGGCAC
* *
55025 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CCTTTTCCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTCCAT
* *
55077 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCC-TTTTC-CAT
* *
55132 TTTTAAGCCCAATAT
1 CTTTAAGTCCAATAT
55147 CGTTGGTCGT
Statistics
Matches: 59, Mismatches: 8, Indels: 3
0.84 0.11 0.04
Matches are distributed among these distances:
52 38 0.64
53 2 0.03
54 5 0.08
55 14 0.24
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (53 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTCCAT
Found at i:56055 original size:13 final size:13
Alignment explanation
Indices: 56037--56061 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
56027 CATAAAATGT
56037 TGTATCGATACAA
1 TGTATCGATACAA
56050 TGTATCGATACA
1 TGTATCGATACA
56062 TTTTTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:56142 original size:13 final size:13
Alignment explanation
Indices: 56124--56148 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
56114 ATCACTCACA
56124 TGTATCGATACAT
1 TGTATCGATACAT
56137 TGTATCGATACA
1 TGTATCGATACA
56149 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:56200 original size:52 final size:50
Alignment explanation
Indices: 56137--56281 Score: 200
Period size: 52 Copynumber: 2.8 Consensus size: 50
56127 ATCGATACAT
*
56137 TGTATCGATACACTGATCTTTGTATCGATACATGCAGGCAAATTTGCCCAGA
1 TGTATCGATACACT-AT-TATGTATCGATACATGCAGGCAAATTTGCCCAGA
* *
56189 TGTATCGATACATTATAAAGTGTATCGATACATGCAGGCAAATTTGCCCAGA
1 TGTATCGATACACTAT-TA-TGTATCGATACATGCAGGCAAATTTGCCCAGA
*
56241 TGTATCGATACACTATTAAATGTATCGATACATGCAAGCAA
1 TGTATCGATACACTATT--ATGTATCGATACATGCAGGCAA
56282 CTTTTCATAT
Statistics
Matches: 83, Mismatches: 7, Indels: 6
0.86 0.07 0.06
Matches are distributed among these distances:
51 2 0.02
52 80 0.96
53 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.30
Consensus pattern (50 bp):
TGTATCGATACACTATTATGTATCGATACATGCAGGCAAATTTGCCCAGA
Found at i:63268 original size:51 final size:50
Alignment explanation
Indices: 63213--63359 Score: 154
Period size: 50 Copynumber: 2.9 Consensus size: 50
63203 TATCCCCTGA
* * * *
63213 TGAAAATTTAATATTTTGGAGATAAAAATGGGGTTTGAGTATCCCCAATGG
1 TGAAAA-TTGATATTTTGGAAATAAAAATGGGGTTAGAATATCCCCAATGG
* * *
63264 TGAAAGATCGATATTTTGAAAATAAAACA--GGGTTAGATTATCCCCAATGG
1 TGAAA-ATTGATATTTTGGAAATAAAA-ATGGGGTTAGAATATCCCCAATGG
* * *
63314 TGAAAAGTTGATATTTTGGAAACAAAATTGGGGTTGGAATATCCCC
1 TGAAAA-TTGATATTTTGGAAATAAAAATGGGGTTAGAATATCCCC
63360 TCAAAAATAA
Statistics
Matches: 79, Mismatches: 12, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
49 1 0.01
50 41 0.52
51 35 0.44
52 2 0.03
ACGTcount: A:0.37, C:0.10, G:0.22, T:0.31
Consensus pattern (50 bp):
TGAAAATTGATATTTTGGAAATAAAAATGGGGTTAGAATATCCCCAATGG
Found at i:63527 original size:128 final size:131
Alignment explanation
Indices: 63374--63644 Score: 302
Period size: 128 Copynumber: 2.1 Consensus size: 131
63364 AAATAACAAT
* * **
63374 GTTGGAGTAT-CCTCGATGGTGGAAAATCGGTGTTTTAGAAACAAAA-CTAGGGTTAGAGTATCC
1 GTTGGAGTATCCCTCGATAGTAGAAAATCAATGTTTTAGAAACAAAATC-AGGGTTAGAGTATCC
* * * * *
63437 CTTAAAAAATAACAGGGTTTGAGTATCTCTGCT-GATAAAAAAT-GATGTTTTAAAAATAAAATG
65 CTTAAAAAATAACAGGGTTAGAGTATCCCCGATAG-TAAAAAATCGATGTTTTAAAAATAAAATC
63500 AG-
129 AGA
* * *
63502 GTTGGAGTATCCCT-GATAGTAGAAAATTAATGTTTTAGAAATAAAATCAGGGTTGGAGTATCCC
1 GTTGGAGTATCCCTCGATAGTAGAAAATCAATGTTTTAGAAACAAAATCAGGGTTAGAGTATCCC
*** * * * *
63566 TTCGGAAATAATAGGGTTAGAGTATCCCCGATAGTGAAAAATCGGTGTTTTAGAAATAAAATCAG
66 TTAAAAAATAACAGGGTTAGAGTATCCCCGATAGTAAAAAATCGATGTTTTAAAAATAAAATCAG
63631 A
131 A
*
63632 GTTAGAGTATCCC
1 GTTGGAGTATCCC
63645 CTCAGAAATA
Statistics
Matches: 118, Mismatches: 20, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
128 82 0.69
129 24 0.20
130 12 0.10
ACGTcount: A:0.37, C:0.11, G:0.23, T:0.30
Consensus pattern (131 bp):
GTTGGAGTATCCCTCGATAGTAGAAAATCAATGTTTTAGAAACAAAATCAGGGTTAGAGTATCCC
TTAAAAAATAACAGGGTTAGAGTATCCCCGATAGTAAAAAATCGATGTTTTAAAAATAAAATCAG
A
Found at i:63640 original size:79 final size:79
Alignment explanation
Indices: 63501--63781 Score: 316
Period size: 79 Copynumber: 3.6 Consensus size: 79
63491 AATAAAATGA
* **
63501 GGTTGGAGTATCCCTGATAGT-AGAAAATTAATGTTTTAGAAATAAAATCAGGGTTGGAGTATCC
1 GGTTGGAGTATCCCCGATAGTGA-AAAATCGATGTTTTAGAAATAAAATCAGGGTTGGAGTATCC
**
63565 CTTCGGAAATAATAG
65 CTTCGGAAATAACGG
* * * *
63580 GGTTAGAGTATCCCCGATAGTGAAAAATCGGTGTTTTAGAAATAAAATCAGAGTTAGAGTATCCC
1 GGTTGGAGTATCCCCGATAGTGAAAAATCGATGTTTTAGAAATAAAATCAGGGTTGGAGTATCCC
* *
63645 CTCAGAAATAACGG
66 TTCGGAAATAACGG
** * * * *
63659 GGTTGGAGTATCCCTAATGGTCAAAAATTGATGTTTTAAAAATAAAACTC-GGGTTGGAGTATCC
1 GGTTGGAGTATCCCCGATAGTGAAAAATCGATGTTTTAGAAATAAAA-TCAGGGTTGGAGTATCC
*
63723 CTTCGAAAATAACGG
65 CTTCGGAAATAACGG
* * * *
63738 GGTTTGAGTATCCTCGAT-GATGGAAAATCGGTGTTTTAGAAATA
1 GGTTGGAGTATCCCCGATAG-TGAAAAATCGATGTTTTAGAAATA
63782 GAAACATCAA
Statistics
Matches: 166, Mismatches: 33, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
78 1 0.01
79 162 0.98
80 3 0.02
ACGTcount: A:0.35, C:0.12, G:0.24, T:0.29
Consensus pattern (79 bp):
GGTTGGAGTATCCCCGATAGTGAAAAATCGATGTTTTAGAAATAAAATCAGGGTTGGAGTATCCC
TTCGGAAATAACGG
Found at i:68641 original size:17 final size:18
Alignment explanation
Indices: 68619--68666 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 18
68609 TTTCTTTGTG
68619 AAAGAAAAAAAGAAAA-A
1 AAAGAAAAAAAGAAAAGA
*
68636 AAAGAACAAAAGAAAAGA
1 AAAGAAAAAAAGAAAAGA
*
68654 AAA-AAGAAAAGAA
1 AAAGAAAAAAAGAA
68667 TGAAAGGGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
17 24 0.86
18 4 0.14
ACGTcount: A:0.83, C:0.02, G:0.15, T:0.00
Consensus pattern (18 bp):
AAAGAAAAAAAGAAAAGA
Found at i:68647 original size:25 final size:25
Alignment explanation
Indices: 68619--68666 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
68609 TTTCTTTGTG
68619 AAAGAAAA-AAAGAAAAAAAAGAACA
1 AAAGAAAAGAAA-AAAAAAAAGAACA
*
68644 AAAGAAAAGAAAAAAGAAAAGAA
1 AAAGAAAAGAAAAAAAAAAAGAA
68667 TGAAAGGGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 18 0.86
26 3 0.14
ACGTcount: A:0.83, C:0.02, G:0.15, T:0.00
Consensus pattern (25 bp):
AAAGAAAAGAAAAAAAAAAAGAACA
Found at i:68664 original size:12 final size:12
Alignment explanation
Indices: 68619--68666 Score: 62
Period size: 12 Copynumber: 3.9 Consensus size: 12
68609 TTTCTTTGTG
68619 AAAGAAAA-AAA
1 AAAGAAAAGAAA
*
68630 GAAAAAAAAGAACA
1 -AAAGAAAAGAA-A
68644 AAAGAAAAGAAA
1 AAAGAAAAGAAA
68656 AAAGAAAAGAA
1 AAAGAAAAGAA
68667 TGAAAGGGAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
12 19 0.59
13 12 0.38
14 1 0.03
ACGTcount: A:0.83, C:0.02, G:0.15, T:0.00
Consensus pattern (12 bp):
AAAGAAAAGAAA
Found at i:68672 original size:25 final size:25
Alignment explanation
Indices: 68617--68672 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
68607 ATTTTCTTTG
68617 TGAAAGAAAAAAAGAAAAAAAAGAA
1 TGAAAGAAAAAAAGAAAAAAAAGAA
** *
68642 CAAAAGAAAAGAAA-AAAGAAAAGAA
1 TGAAAGAAAA-AAAGAAAAAAAAGAA
68667 TGAAAG
1 TGAAAG
68673 GGATGAAAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
25 22 0.88
26 3 0.12
ACGTcount: A:0.77, C:0.02, G:0.18, T:0.04
Consensus pattern (25 bp):
TGAAAGAAAAAAAGAAAAAAAAGAA
Found at i:70982 original size:13 final size:13
Alignment explanation
Indices: 70964--70989 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
70954 CATTTTTTGG
70964 TGTATCGATACAT
1 TGTATCGATACAT
70977 TGTATCGATACAT
1 TGTATCGATACAT
70990 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:71004 original size:32 final size:33
Alignment explanation
Indices: 70944--71007 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
70934 TACAAGCTAA
**
70944 TGTATCGATACATTTTTTGGTGTATCGATACAT
1 TGTATCGATACATACTTTGGTGTATCGATACAT
70977 TGTATCGATACATACTTT-GTGTATCGATACA
1 TGTATCGATACATACTTTGGTGTATCGATACA
71008 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 13 0.45
33 16 0.55
ACGTcount: A:0.27, C:0.14, G:0.17, T:0.42
Consensus pattern (33 bp):
TGTATCGATACATACTTTGGTGTATCGATACAT
Found at i:73390 original size:21 final size:20
Alignment explanation
Indices: 73344--73390 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
73334 TTTGAAACTG
*
73344 ATTTTGATGAAAAACGATGT
1 ATTTTGATGAAAAACGAAGT
*
73364 AATTTGAAGTGAAAAAC-AAGT
1 ATTTTG-A-TGAAAAACGAAGT
73385 ATTTTG
1 ATTTTG
73391 CAAAAGATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.43, C:0.04, G:0.19, T:0.34
Consensus pattern (20 bp):
ATTTTGATGAAAAACGAAGT
Found at i:73537 original size:20 final size:20
Alignment explanation
Indices: 73512--73589 Score: 66
Period size: 20 Copynumber: 3.6 Consensus size: 20
73502 ATAAACCCCC
73512 TGTATCGATACAAAGAAAGA
1 TGTATCGATACAAAGAAAGA
**
73532 TGTATCGATACATTGAATTTTCCAGA
1 TGTATCGATACAAAGAA------AGA
* *
73558 TGTATCGATACACAGAAACA
1 TGTATCGATACAAAGAAAGA
73578 TGTATCGATACA
1 TGTATCGATACA
73590 TTTTGGAAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
20 29 0.62
26 18 0.38
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (20 bp):
TGTATCGATACAAAGAAAGA
Found at i:75636 original size:16 final size:15
Alignment explanation
Indices: 75601--75639 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
75591 TCATCAATTG
*
75601 CATTTGGAGCTTCTT
1 CATTTGGAGCTTCCT
*
75616 CATTTTGAGCTTCCT
1 CATTTGGAGCTTCCT
75631 CAATTTGGA
1 C-ATTTGGA
75640 CATTTTTATC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 14 0.70
16 6 0.30
ACGTcount: A:0.18, C:0.21, G:0.18, T:0.44
Consensus pattern (15 bp):
CATTTGGAGCTTCCT
Found at i:79721 original size:19 final size:20
Alignment explanation
Indices: 79678--79728 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
79668 TACAAGCTAA
**
79678 TGTATCGATACATTTTTTGG
1 TGTATCGATACATACTTTGG
79698 TGTATCGATACATACTTT-G
1 TGTATCGATACATACTTTGG
79717 TGTATCGATACA
1 TGTATCGATACA
79729 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 13 0.45
20 16 0.55
ACGTcount: A:0.25, C:0.14, G:0.18, T:0.43
Consensus pattern (20 bp):
TGTATCGATACATACTTTGG
Found at i:83661 original size:33 final size:32
Alignment explanation
Indices: 83601--83662 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
83591 GCCAAACTTG
**
83601 TATCGATACACAAAGTATGTATCGATACAATA
1 TATCGATACACAAAAAATGTATCGATACAATA
*
83633 TATCGATACACAAAAAATTGTATTGATACA
1 TATCGATACACAAAAAA-TGTATCGATACA
83663 TTGGCTTGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 15 0.58
33 11 0.42
ACGTcount: A:0.45, C:0.15, G:0.11, T:0.29
Consensus pattern (32 bp):
TATCGATACACAAAAAATGTATCGATACAATA
Found at i:86409 original size:20 final size:20
Alignment explanation
Indices: 86386--86458 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
86376 ACAATTCAAA
86386 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
86406 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
86427 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
86447 GTATCGATACAT
1 GTATCGATACAT
86459 AAAAAAGATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:86430 original size:21 final size:21
Alignment explanation
Indices: 86404--86479 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
86394 ACATGTTGCA
86404 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
86425 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
86445 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
86466 ATGTATCGATACAT
1 ATGTATCGATACAT
86480 CTCTTGGCAG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.29
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:86437 original size:41 final size:41
Alignment explanation
Indices: 86386--86479 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
86376 ACAATTCAAA
*
86386 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
86427 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
86468 GTATCGATACAT
1 GTATCGATACAT
86480 CTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:86536 original size:13 final size:13
Alignment explanation
Indices: 86518--86543 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
86508 TACAGCAAGT
86518 ATGTATCGATACA
1 ATGTATCGATACA
86531 ATGTATCGATACA
1 ATGTATCGATACA
86544 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:90626 original size:15 final size:15
Alignment explanation
Indices: 90606--90636 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
90596 TAAAAATGTC
*
90606 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
90621 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
90636 C
1 C
90637 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:92724 original size:13 final size:13
Alignment explanation
Indices: 92706--92743 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
92696 CATTTTTCTT
92706 TGTATCGATACAA
1 TGTATCGATACAA
*
92719 TGTATCGATACAC
1 TGTATCGATACAA
92732 TGTATCGATACA
1 TGTATCGATACA
92744 GGGGGATTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:93213 original size:21 final size:20
Alignment explanation
Indices: 93171--93213 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
93161 GGCAACACCA
* *
93171 CCAGGTCGCGACCGGCACTC
1 CCAGGTCACAACCGGCACTC
*
93191 CCAGGTCACAACCAGGCAGTC
1 CCAGGTCACAACC-GGCACTC
93212 CC
1 CC
93214 CACACTAGTC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.21, C:0.44, G:0.26, T:0.09
Consensus pattern (20 bp):
CCAGGTCACAACCGGCACTC
Found at i:94556 original size:21 final size:20
Alignment explanation
Indices: 94510--94558 Score: 80
Period size: 20 Copynumber: 2.4 Consensus size: 20
94500 AGAGAATAGA
94510 TGTATGTGCAAATAAATTTT
1 TGTATGTGCAAATAAATTTT
*
94530 TGTATGTGCGAATAAATTTT
1 TGTATGTGCAAATAAATTTT
94550 TGATATGTG
1 TG-TATGTG
94559 TGTAAATTAC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
20 21 0.78
21 6 0.22
ACGTcount: A:0.31, C:0.04, G:0.20, T:0.45
Consensus pattern (20 bp):
TGTATGTGCAAATAAATTTT
Found at i:95325 original size:13 final size:13
Alignment explanation
Indices: 95307--95332 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
95297 TGCACAAAGT
95307 ATGTATCGATACA
1 ATGTATCGATACA
95320 ATGTATCGATACA
1 ATGTATCGATACA
95333 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:95335 original size:32 final size:33
Alignment explanation
Indices: 95289--95352 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
95279 TAGCCAAACT
* **
95289 TGTATCGATGCACAAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
95321 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
95353 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:96379 original size:90 final size:90
Alignment explanation
Indices: 96217--96411 Score: 230
Period size: 90 Copynumber: 2.2 Consensus size: 90
96207 TCAATATTGG
* * * * * *
96217 AAGCTTGATTTCTTTAAGGCAAGGAGGCAGACCACACATTCCTAATTATATCCATTTCCTTCGAC
1 AAGCCTGATTTCCTTAAGGCAAGGAGGCAGACCACACATTCCTAATCATATCCACTTCCTCCAAC
* *
96282 CACTAGATGGTATTGATACATCACA
66 CACTAGATAGTATTAATACATCACA
* * * * *
96307 AAGCCTGATTTCCTTATGGTAAGGATGCAGACCACACATTCCTAGTCATATCTC-CTTCGTCCAA
1 AAGCCTGATTTCCTTAAGGCAAGGAGGCAGACCACACATTCCTAATCATATC-CACTTCCTCCAA
* *
96371 CCATTAGATAGTATTAATGCATCACA
65 CCACTAGATAGTATTAATACATCACA
*
96397 AAGCCTAATTTCCTT
1 AAGCCTGATTTCCTT
96412 GGAGTATGGA
Statistics
Matches: 88, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
90 87 0.99
91 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.31
Consensus pattern (90 bp):
AAGCCTGATTTCCTTAAGGCAAGGAGGCAGACCACACATTCCTAATCATATCCACTTCCTCCAAC
CACTAGATAGTATTAATACATCACA
Found at i:96483 original size:92 final size:89
Alignment explanation
Indices: 96244--96671 Score: 285
Period size: 92 Copynumber: 4.7 Consensus size: 89
96234 GGCAAGGAGG
* * * *
96244 CAGACCACACATTCCTAATTATATCCATTTC-CTTCGACCACTAGATGGTATTGATACATCACAA
1 CAGACCACACATTCCTAATCATATCCTTTTCTCTTAG-CCACTAGATGGTATTGATGCATCACAA
* *
96308 AGCCTGATTTCCTTATGGTAAGGATG
65 AGCCTGATTTCCTT-GGGTAAGGATC
* * * * * * *
96334 CAGACCACACATTCCTAGTCATAT-CTCCTTCGTC-CAACCATTAGATAGTATTAATGCATCACA
1 CAGACCACACATTCCTAATCATATCCT-TTTC-TCTTAGCCACTAGATGGTATTGATGCATCACA
* *
96397 AAGCCTAATTTCCTTGGAGTATGGACATC
64 AAGCCTGATTTCCTTGG-GTAAGG--ATC
* * * *
96426 CTGGCCATACATTCCCAATCATATCCTTTTCTCTTAGCCACTAGATGGTATTGATGCATCACAAA
1 CAGACCACACATTCCTAATCATATCCTTTTCTCTTAGCCACTAGATGGTATTGATGCATCACAAA
* *
96491 ACCTGATTTCCTTGAGGCAAAGGTATC
66 GCCTGATTTCCTTG-GG-TAAGG-ATC
* * * * * * * * * *
96518 TTA-ACTACCCATTCCCAATCATATCCCTTTCAT-TCAACTATTAGATGATATTGATGCATCACA
1 -CAGACCACACATTCCTAATCATATCCTTTTC-TCTTAGCCACTAGATGGTATTGATGCATCACA
* * *
96581 AAGCCTAATTTCCATGAGTCAAAGGTATC
64 AAGCCTGATTTCCTTGGGT--AAGG-ATC
* * * * * * * *
96610 TTA-ACCACACATTCCCAATCATATCCTTTT-TTTTAGTCATTGGATGGTATCGATGTATCACA
1 -CAGACCACACATTCCTAATCATATCCTTTTCTCTTAGCCACTAGATGGTATTGATGCATCACA
96672 TGATGACAAA
Statistics
Matches: 264, Mismatches: 59, Indels: 29
0.75 0.17 0.08
Matches are distributed among these distances:
89 2 0.01
90 67 0.25
91 25 0.09
92 163 0.62
93 7 0.03
ACGTcount: A:0.30, C:0.25, G:0.13, T:0.32
Consensus pattern (89 bp):
CAGACCACACATTCCTAATCATATCCTTTTCTCTTAGCCACTAGATGGTATTGATGCATCACAAA
GCCTGATTTCCTTGGGTAAGGATC
Found at i:96624 original size:184 final size:182
Alignment explanation
Indices: 96247--96671 Score: 445
Period size: 184 Copynumber: 2.3 Consensus size: 182
96237 AAGGAGGCAG
* * * * * *
96247 ACCACACATTCCTAATTATATCCATTTC-CTTCGACCACTAGATGGTATTGATACATCACAAAGC
1 ACCACACATTCCCAATCATATCCTTTTCTCTTAG-CCACTAGATGGTATTGATGCATCACAAAAC
* * * *
96311 CTGATTTCCTTATGGTAAGGATGCAGACCACACATTCCTAGTCATATCTCCTTCGTCCAACCATT
65 CTGATTTCCTTATGGAAAGGATGCAGACCACACATTCCCAATCATATCTCCTTCATCCAACCATT
* * *
96376 AGATAGTATTAATGCATCACAAAGCCTAATTTCCTTGGAGTATGGACATCCTG
130 AGATAGTATTAATGCATCACAAAGCCTAATTTCCATGGAGTAAGGACATCCTA
* *
96429 GCCATACATTCCCAATCATATCCTTTTCTCTTAGCCACTAGATGGTATTGATGCATCACAAAACC
1 ACCACACATTCCCAATCATATCCTTTTCTCTTAGCCACTAGATGGTATTGATGCATCACAAAACC
* * *
96494 TGATTTCCTTGA-GGCAAAGGTAT-CTTA-ACTACCCATTCCCAATCATATC-CCTTTCATTCAA
66 TGATTTCCTT-ATGG-AAAGG-ATGC--AGACCACACATTCCCAATCATATCTCC-TTCATCCAA
* * * *
96555 CTATTAGAT-GATATTGATGCATCACAAAGCCTAATTTCCAT-GAGTCAAAGG-TATCTTA
125 CCATTAGATAG-TATTAATGCATCACAAAGCCTAATTTCCATGGAGT--AAGGACATCCTA
* * * * * *
96613 ACCACACATTCCCAATCATATCCTTTT-TTTTAGTCATTGGATGGTATCGATGTATCACA
1 ACCACACATTCCCAATCATATCCTTTTCTCTTAGCCACTAGATGGTATTGATGCATCACA
96672 TGATGACAAA
Statistics
Matches: 203, Mismatches: 30, Indels: 19
0.81 0.12 0.08
Matches are distributed among these distances:
182 64 0.32
183 43 0.21
184 92 0.45
185 4 0.02
ACGTcount: A:0.30, C:0.25, G:0.13, T:0.32
Consensus pattern (182 bp):
ACCACACATTCCCAATCATATCCTTTTCTCTTAGCCACTAGATGGTATTGATGCATCACAAAACC
TGATTTCCTTATGGAAAGGATGCAGACCACACATTCCCAATCATATCTCCTTCATCCAACCATTA
GATAGTATTAATGCATCACAAAGCCTAATTTCCATGGAGTAAGGACATCCTA
Found at i:96965 original size:19 final size:18
Alignment explanation
Indices: 96908--96965 Score: 55
Period size: 18 Copynumber: 3.1 Consensus size: 18
96898 TAGAAAGAAA
* *
96908 AATGAAAAACTAAAAAATG
1 AATGAAAAA-TCAAACATG
*
96927 AATGAAAAATGAAACATG
1 AATGAAAAATCAAACATG
96945 AA-GAATAAATCAAATCATG
1 AATGAA-AAATCAAA-CATG
96964 AA
1 AA
96966 AATTCATGTG
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
17 3 0.09
18 16 0.47
19 15 0.44
ACGTcount: A:0.64, C:0.07, G:0.12, T:0.17
Consensus pattern (18 bp):
AATGAAAAATCAAACATG
Found at i:97500 original size:46 final size:46
Alignment explanation
Indices: 97431--97885 Score: 233
Period size: 46 Copynumber: 9.8 Consensus size: 46
97421 TCATCTCAAA
*
97431 TTTGACTATATTAGCATTAGTCCTGGTCAAACTCTTTCCACCCTTG
1 TTTGACTATATTGGCATTAGTCCTGGTCAAACTCTTTCCACCCTTG
* * * * **
97477 TTTGATTAAATTGGCGTTAGTCCTGGTTAAACTCTTTCCACCCTCA
1 TTTGACTATATTGGCATTAGTCCTGGTCAAACTCTTTCCACCCTTG
** * * *
97523 TTTGACTATATTGGTGTTAGGACCTGGTCAAAATTTCTTTCCACCCTCG
1 TTTGACTATATTGGCATTA-GTCCTGGTC-AAA-CTCTTTCCACCCTTG
* * * *
97572 TTTGACTATATTGGTATTAGGACCTGGTCAAACT-GTT----CCTTCA
1 TTTGACTATATTGGCATTA-GTCCTGGTCAAACTCTTTCCACCCTT-G
* * * *
97615 TTTAATTGTATTGACATTAGTCCTGGT-AAACTCTTTCCACCCTTG
1 TTTGACTATATTGGCATTAGTCCTGGTCAAACTCTTTCCACCCTTG
* * * * * ** ** *
97660 TTTGACTAAATTAGCATTAAGACCTAGTTAAACTCTTTTTACTTTTT
1 TTTGACTATATTGGCATT-AGTCCTGGTCAAACTCTTTCCACCCTTG
* * * * * * ** *
97707 TTTAACTGTA-TGTGCGTTAAGACTTGATCAAACTCTTTTTACCCTTA
1 TTTGACTATATTG-GCATT-AGTCCTGGTCAAACTCTTTCCACCCTTG
* * ** * *
97754 TCTGACTATATTGGCGTTAGTCCTGGTTGAACTCTTTTCACCGTTG
1 TTTGACTATATTGGCATTAGTCCTGGTCAAACTCTTTCCACCCTTG
* * * ** * **
97800 TTTGACTCTATTTGCGTTTTTCCTAGTCAAACTCCTTT-CATATCTTG
1 TTTGACTATATTGGCATTAGTCCTGGTCAAACT-CTTTCCA-CCCTTG
* * * * *
97847 TTTAACTGTATTGGCGTTAGTCCTAGTTAAACTCCTTTC
1 TTTGACTATATTGGCATTAGTCCTGGTCAAACT-CTTTC
97886 AGATCTCATT
Statistics
Matches: 313, Mismatches: 80, Indels: 30
0.74 0.19 0.07
Matches are distributed among these distances:
41 5 0.02
42 12 0.04
43 14 0.04
45 12 0.04
46 116 0.37
47 105 0.34
48 8 0.03
49 41 0.13
ACGTcount: A:0.22, C:0.21, G:0.15, T:0.42
Consensus pattern (46 bp):
TTTGACTATATTGGCATTAGTCCTGGTCAAACTCTTTCCACCCTTG
Found at i:97546 original size:135 final size:135
Alignment explanation
Indices: 97304--97554 Score: 308
Period size: 135 Copynumber: 1.9 Consensus size: 135
97294 CGTTTCACTG
* * ** *
97304 TATTACCATTAGTCTTGGTCAAACTCTTTCCATCCTCATTTGATTGTATTGGTGGTAGAACCTAG
1 TATTACCATTAGTCCTGGTCAAACTCTTTCCACCCTCATTTGATTAAATTGGCGGTAGAACCTAG
* * * *
97369 TCAAATTCTTTTACCTGCCTTTGACTGTATTGGCATTAGGACCTGGTCAAACTCATCTCAAATTT
66 TCAAACTCTTTCACCTGCATTTGACTATATTGGCATTAGGACCTGGTCAAACTCATCTCAAATTT
97434 GACTA
131 GACTA
* ** * * *
97439 TATTAGCATTAGTCCTGGTCAAACTCTTTCCACCCTTGTTTGATTAAATTGGCGTTAG-TCCTGG
1 TATTACCATTAGTCCTGGTCAAACTCTTTCCACCCTCATTTGATTAAATTGGCGGTAGAACCTAG
* **
97503 TTAAACTCTTTCCACCCT-CATTTGACTATATTGGTGTTAGGACCTGGTCAAA
66 TCAAACTCTTT-CA-CCTGCATTTGACTATATTGGCATTAGGACCTGGTCAAA
97555 ATTTCTTTCC
Statistics
Matches: 96, Mismatches: 18, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
134 13 0.14
135 80 0.83
136 3 0.03
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (135 bp):
TATTACCATTAGTCCTGGTCAAACTCTTTCCACCCTCATTTGATTAAATTGGCGGTAGAACCTAG
TCAAACTCTTTCACCTGCATTTGACTATATTGGCATTAGGACCTGGTCAAACTCATCTCAAATTT
GACTA
Found at i:97576 original size:49 final size:48
Alignment explanation
Indices: 97452--97603 Score: 193
Period size: 49 Copynumber: 3.2 Consensus size: 48
97442 TAGCATTAGT
* * * * *
97452 CCTGGTC-AAACTCTTTCCACCCTTGTTTGATTAAATTGGCGTTA-GT
1 CCTGGTCAAAACTCTTTCCACCCTCGTTTGACTATATTGGTGTTAGGA
* *
97498 CCTGGT-TAAACTCTTTCCACCCTCATTTGACTATATTGGTGTTAGGA
1 CCTGGTCAAAACTCTTTCCACCCTCGTTTGACTATATTGGTGTTAGGA
* *
97545 CCTGGTCAAAATTTCTTTCCACCCTCGTTTGACTATATTGGTATTAGGA
1 CCTGGTCAAAA-CTCTTTCCACCCTCGTTTGACTATATTGGTGTTAGGA
97594 CCTGGTCAAA
1 CCTGGTCAAA
97604 CTGTTCCTTC
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
46 38 0.41
47 7 0.08
48 3 0.03
49 44 0.48
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.38
Consensus pattern (48 bp):
CCTGGTCAAAACTCTTTCCACCCTCGTTTGACTATATTGGTGTTAGGA
Found at i:97692 original size:184 final size:180
Alignment explanation
Indices: 97273--97697 Score: 462
Period size: 181 Copynumber: 2.3 Consensus size: 180
97263 GATTCAGCCT
** * * ** * * * * * *
97273 TGGTCAAACTCTTTATACCCTCGTTTCACTGTATTACCATTAGTCTTGGTCAAACTCTTTCCATC
1 TGGTCAAACTCTTTCCACCCTTGTTTGACTAAATTAGCATTAGACCTAGTTAAACTCTTTCCACC
* * * *
97338 CTCATTTGATTGTATTGGTGGTAGAACCTAGTCAAATTCTTTTACCTGCCTTTGACTGTATTGGC
66 CTCATTTGACTATATTGGTGGTAGAACCTAGTCAAATTCTTTCACCTGCCTTTGACTATATTGGC
*
97403 ATTAGGACCTGGTCAAACTCATCTCAAATTTGACTATATTAGCATTAGTCC
131 ATTAGGACCTGGTCAAACTCATCTC-AATTTAACTATATTAGCATTAGTCC
* * * * *
97454 TGGTCAAACTCTTTCCACCCTTGTTTGATTAAATTGGCGTTAGTCCTGGTTAAACTCTTTCCACC
1 TGGTCAAACTCTTTCCACCCTTGTTTGACTAAATTAGCATTAGACCTAGTTAAACTCTTTCCACC
* * * *
97519 CTCATTTGACTATATTGGTGTTAGGACCTGGTCAAAATTTCTTTCCACCCT-CGTTTGACTATAT
66 CTCATTTGACTATATTGGTGGTAGAACCTAGTC-AAA-TTCTTT-CA-CCTGCCTTTGACTATAT
* ** * *
97583 TGGTATTAGGACCTGGTCAAACTGTTCCTTC-ATTTAATTGTATT-GACATTAGTCC
127 TGGCATTAGGACCTGGTCAAACTCAT-C-TCAATTTAACTATATTAG-CATTAGTCC
97638 TGGT-AAACTCTTTCCACCCTTGTTTGACTAAATTAGCATTAAGACCTAGTTAAACTCTTT
1 TGGTCAAACTCTTTCCACCCTTGTTTGACTAAATTAGCATT-AGACCTAGTTAAACTCTTT
97698 TTACTTTTTT
Statistics
Matches: 204, Mismatches: 32, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
181 80 0.39
182 3 0.01
183 40 0.20
184 75 0.37
185 4 0.02
186 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.15, T:0.39
Consensus pattern (180 bp):
TGGTCAAACTCTTTCCACCCTTGTTTGACTAAATTAGCATTAGACCTAGTTAAACTCTTTCCACC
CTCATTTGACTATATTGGTGGTAGAACCTAGTCAAATTCTTTCACCTGCCTTTGACTATATTGGC
ATTAGGACCTGGTCAAACTCATCTCAATTTAACTATATTAGCATTAGTCC
Found at i:97871 original size:47 final size:46
Alignment explanation
Indices: 97756--97925 Score: 141
Period size: 47 Copynumber: 3.7 Consensus size: 46
97746 TACCCTTATC
* * ** * *
97756 TGACTATATTGGCGTTAGTCCTGGTTGAACTCTTTTC-ACCGTTGTT
1 TGACTGTATTGGCGTTAGTCCTAGTCAAACTCCTTTCAATC-TTGTT
* * **
97802 TGACTCTATTTGCGTTTTTCCTAGTCAAACTCCTTTCATATCTTGTT
1 TGACTGTATTGGCGTTAGTCCTAGTCAAACTCCTTTCA-ATCTTGTT
* * **
97849 TAACTGTATTGGCGTTAGTCCTAGTTAAACTCCTTTCAGATCTCATT
1 TGACTGTATTGGCGTTAGTCCTAGTCAAACTCCTTTCA-ATCTTGTT
*
97896 TGACATG-A-TGG-TTTAGTCCTAGTCAAACTC
1 TGAC-TGTATTGGCGTTAGTCCTAGTCAAACTC
97926 TTTTTCATCC
Statistics
Matches: 100, Mismatches: 21, Indels: 7
0.78 0.16 0.05
Matches are distributed among these distances:
45 17 0.17
46 32 0.32
47 47 0.47
48 4 0.04
ACGTcount: A:0.20, C:0.21, G:0.16, T:0.42
Consensus pattern (46 bp):
TGACTGTATTGGCGTTAGTCCTAGTCAAACTCCTTTCAATCTTGTT
Found at i:97924 original size:45 final size:43
Alignment explanation
Indices: 97820--97969 Score: 140
Period size: 45 Copynumber: 3.3 Consensus size: 43
97810 TTTGCGTTTT
* * *
97820 TCCTAGTCAAACTCCTTTCATATCTTGTTTAACTGTATTGGCGTTAG
1 TCCTAGTCAAACTCCTTTCA-ATCTCGTTTGACTG-A-TGG-TTTAG
* *
97867 TCCTAGTTAAACTCCTTTCAGATCTCATTTGACATGATGGTTTAG
1 TCCTAGTCAAACTCCTTTCA-ATCTCGTTTGAC-TGATGGTTTAG
*
97912 TCCTAGTCAAACTCTTTTTC-ATCCTCGTTTGACGTGATGGTTTAG
1 TCCTAGTCAAACTC-CTTTCAAT-CTCGTTTGAC-TGATGGTTTAG
* *
97957 CCCTGGTCAAACT
1 TCCTAGTCAAACT
97970 TTTTTTATAT
Statistics
Matches: 88, Mismatches: 12, Indels: 8
0.81 0.11 0.07
Matches are distributed among these distances:
44 2 0.02
45 48 0.55
46 7 0.08
47 29 0.33
48 2 0.02
ACGTcount: A:0.21, C:0.23, G:0.16, T:0.40
Consensus pattern (43 bp):
TCCTAGTCAAACTCCTTTCAATCTCGTTTGACTGATGGTTTAG
Found at i:97975 original size:45 final size:44
Alignment explanation
Indices: 97894--98014 Score: 134
Period size: 45 Copynumber: 2.7 Consensus size: 44
97884 TCAGATCTCA
* * * *
97894 TTTGACATGATGGTTTAGTCCTAGTCAAACTCTTTTTCATCCTCG
1 TTTGACGTGATGGTTTAGCCCTGGTCAAACTCTTTTT-ATACTCG
* * *
97939 TTTGACGTGATGGTTTAGCCCTGGTCAAACTTTTTTTATATTTG
1 TTTGACGTGATGGTTTAGCCCTGGTCAAACTCTTTTTATACTCG
* * * *
97983 TTTGACGTAAAGGTTTATCCTTGGTCAAACTC
1 TTTGACGTGATGGTTTAGCCCTGGTCAAACTC
98015 GGTACATCTA
Statistics
Matches: 64, Mismatches: 12, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
44 31 0.48
45 33 0.52
ACGTcount: A:0.21, C:0.18, G:0.18, T:0.43
Consensus pattern (44 bp):
TTTGACGTGATGGTTTAGCCCTGGTCAAACTCTTTTTATACTCG
Found at i:97989 original size:44 final size:45
Alignment explanation
Indices: 97894--98014 Score: 136
Period size: 44 Copynumber: 2.7 Consensus size: 45
97884 TCAGATCTCA
* * * *
97894 TTTGACATGATGGTTTAGTCCTAGTCAAACTCTTTTTCATCCTCG
1 TTTGACGTGATGGTTTAGCCCTGGTCAAACTCTTTTTCATACTCG
* * *
97939 TTTGACGTGATGGTTTAGCCCTGGTCAAACT-TTTTTTATATTTG
1 TTTGACGTGATGGTTTAGCCCTGGTCAAACTCTTTTTCATACTCG
* * * *
97983 TTTGACGTAAAGGTTTATCCTTGGTCAAACTC
1 TTTGACGTGATGGTTTAGCCCTGGTCAAACTC
98015 GGTACATCTA
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
44 36 0.56
45 28 0.44
ACGTcount: A:0.21, C:0.18, G:0.18, T:0.43
Consensus pattern (45 bp):
TTTGACGTGATGGTTTAGCCCTGGTCAAACTCTTTTTCATACTCG
Found at i:99125 original size:18 final size:17
Alignment explanation
Indices: 99104--99145 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
99094 TTAAAAAAAT
*
99104 AAAAAAATAAAATCCAA
1 AAAAAAAAAAAATCCAA
*
99121 AAAAAATAAAAAATTCAA
1 AAAAAA-AAAAAATCCAA
99139 AAAAAAA
1 AAAAAAA
99146 TGTGTGAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 7 0.32
18 15 0.68
ACGTcount: A:0.81, C:0.07, G:0.00, T:0.12
Consensus pattern (17 bp):
AAAAAAAAAAAATCCAA
Found at i:99522 original size:38 final size:38
Alignment explanation
Indices: 99478--99573 Score: 156
Period size: 38 Copynumber: 2.5 Consensus size: 38
99468 GAAGAAAGTG
*
99478 GAAGACAAAGCAACGTGGAAAAGCAAAATAGCAATGAT
1 GAAGACAAAGCAACGTGGAAAAGCAAAACAGCAATGAT
* *
99516 GAAGACAAAGCAACATGGAAAAGCAAAACAGCAGTGAT
1 GAAGACAAAGCAACGTGGAAAAGCAAAACAGCAATGAT
*
99554 GAAGACAAAGCAAAGTGGAA
1 GAAGACAAAGCAACGTGGAA
99574 CAACAAAGCA
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 53 1.00
ACGTcount: A:0.53, C:0.14, G:0.25, T:0.08
Consensus pattern (38 bp):
GAAGACAAAGCAACGTGGAAAAGCAAAACAGCAATGAT
Found at i:100104 original size:69 final size:69
Alignment explanation
Indices: 100042--100179 Score: 179
Period size: 69 Copynumber: 2.0 Consensus size: 69
100032 CAGCAGTAGC
* * *
100042 CAACGACAGCTTCAGTAGCTCCCACAATAACCT-TCAGCAACTTCCAATAGCTCCCACAGCAGCC
1 CAACGACAGCTTCAGCAGCTCCCACAACAACCTCT-AGCAACTTCCAACAGCTCCCACAGCAGCC
100106 ATCAG
65 ATCAG
* * * * * *
100111 CAATGACAGCTTCAGCGGCTCCTACAACAACCTCTAGCAACTTCCAACAGCTCTCATAGTAGCCA
1 CAACGACAGCTTCAGCAGCTCCCACAACAACCTCTAGCAACTTCCAACAGCTCCCACAGCAGCCA
100176 TCAG
66 TCAG
100180 GAGCTCAAAG
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
69 58 0.98
70 1 0.02
ACGTcount: A:0.31, C:0.36, G:0.14, T:0.19
Consensus pattern (69 bp):
CAACGACAGCTTCAGCAGCTCCCACAACAACCTCTAGCAACTTCCAACAGCTCCCACAGCAGCCA
TCAG
Found at i:101893 original size:53 final size:53
Alignment explanation
Indices: 101835--101947 Score: 226
Period size: 53 Copynumber: 2.1 Consensus size: 53
101825 TTTGGTTTTT
101835 AAAACTTTTTATATTCTTCTAGCATTCCAGAGGGGTATAAAAAAGAAATAATA
1 AAAACTTTTTATATTCTTCTAGCATTCCAGAGGGGTATAAAAAAGAAATAATA
101888 AAAACTTTTTATATTCTTCTAGCATTCCAGAGGGGTATAAAAAAGAAATAATA
1 AAAACTTTTTATATTCTTCTAGCATTCCAGAGGGGTATAAAAAAGAAATAATA
101941 AAAACTT
1 AAAACTT
101948 ACATGTTTCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 60 1.00
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.32
Consensus pattern (53 bp):
AAAACTTTTTATATTCTTCTAGCATTCCAGAGGGGTATAAAAAAGAAATAATA
Found at i:106644 original size:13 final size:13
Alignment explanation
Indices: 106626--106651 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
106616 CAATTTTTTG
106626 TGTATCGATACAT
1 TGTATCGATACAT
106639 TGTATCGATACAT
1 TGTATCGATACAT
106652 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:106736 original size:20 final size:20
Alignment explanation
Indices: 106711--106783 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
106701 CATCCTTTTT
106711 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
106731 ATGTATCGATACATTTTTTTC
1 ATGTATCGATACA-TTGCAAC
106752 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
106772 ATGTATCGATAC
1 ATGTATCGATAC
106784 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:106756 original size:21 final size:21
Alignment explanation
Indices: 106690--106766 Score: 86
Period size: 21 Copynumber: 3.7 Consensus size: 21
106680 CTGCCAAGAA
*
106690 ATGTATCGATACATCCTTTTT-
1 ATGTATCGATACAT-TTTTTTC
****
106711 ATGTATCGATACA-TTGCAAC
1 ATGTATCGATACATTTTTTTC
106731 ATGTATCGATACATTTTTTTC
1 ATGTATCGATACATTTTTTTC
106752 ATGTATCGATACATT
1 ATGTATCGATACATT
106767 GCAACATGTA
Statistics
Matches: 45, Mismatches: 9, Indels: 4
0.78 0.16 0.07
Matches are distributed among these distances:
19 1 0.02
20 13 0.29
21 31 0.69
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.43
Consensus pattern (21 bp):
ATGTATCGATACATTTTTTTC
Found at i:106756 original size:41 final size:41
Alignment explanation
Indices: 106690--106783 Score: 163
Period size: 41 Copynumber: 2.3 Consensus size: 41
106680 CTGCCAAGAA
106690 ATGTATCGATACATCCTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCCTTTTTATGTATCGATACATTGCAAC
*
106731 ATGTATCGATACAT-TTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCCTTTTT-ATGTATCGATACATTGCAAC
106772 ATGTATCGATAC
1 ATGTATCGATAC
106784 TTTGAATTGT
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
40 5 0.10
41 46 0.90
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (41 bp):
ATGTATCGATACATCCTTTTTATGTATCGATACATTGCAAC
Found at i:109271 original size:13 final size:13
Alignment explanation
Indices: 109253--109291 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
109243 ATAATCACCC
*
109253 TGTATCGATACAG
1 TGTATCGATACAA
109266 TGTATCGATACAA
1 TGTATCGATACAA
109279 TGTATCGATACAA
1 TGTATCGATACAA
109292 GGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:111382 original size:15 final size:15
Alignment explanation
Indices: 111362--111392 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
111352 ATTTCGTTTG
*
111362 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
111377 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
111392 G
1 G
111393 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:115020 original size:13 final size:13
Alignment explanation
Indices: 115002--115027 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
114992 CAATTTTTTG
115002 TGTATCGATACAT
1 TGTATCGATACAT
115015 TGTATCGATACAT
1 TGTATCGATACAT
115028 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:115112 original size:20 final size:20
Alignment explanation
Indices: 115087--115159 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
115077 CATCCTTTTT
115087 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
115107 ATGTATCGATACATTTTTTTC
1 ATGTATCGATACA-TTGCAAC
115128 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
115148 ATGTATCGATAC
1 ATGTATCGATAC
115160 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:115132 original size:21 final size:21
Alignment explanation
Indices: 115066--115142 Score: 86
Period size: 21 Copynumber: 3.7 Consensus size: 21
115056 CTGCCAAGAA
*
115066 ATGTATCGATACATCCTTTTT-
1 ATGTATCGATACAT-TTTTTTC
****
115087 ATGTATCGATACA-TTGCAAC
1 ATGTATCGATACATTTTTTTC
115107 ATGTATCGATACATTTTTTTC
1 ATGTATCGATACATTTTTTTC
115128 ATGTATCGATACATT
1 ATGTATCGATACATT
115143 GCAACATGTA
Statistics
Matches: 45, Mismatches: 9, Indels: 4
0.78 0.16 0.07
Matches are distributed among these distances:
19 1 0.02
20 13 0.29
21 31 0.69
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.43
Consensus pattern (21 bp):
ATGTATCGATACATTTTTTTC
Found at i:115132 original size:41 final size:41
Alignment explanation
Indices: 115066--115159 Score: 163
Period size: 41 Copynumber: 2.3 Consensus size: 41
115056 CTGCCAAGAA
115066 ATGTATCGATACATCCTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCCTTTTTATGTATCGATACATTGCAAC
*
115107 ATGTATCGATACAT-TTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCCTTTTT-ATGTATCGATACATTGCAAC
115148 ATGTATCGATAC
1 ATGTATCGATAC
115160 TTTGAATTGT
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
40 5 0.10
41 46 0.90
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (41 bp):
ATGTATCGATACATCCTTTTTATGTATCGATACATTGCAAC
Found at i:118417 original size:20 final size:20
Alignment explanation
Indices: 118392--118468 Score: 109
Period size: 20 Copynumber: 3.9 Consensus size: 20
118382 GTAAAAAGAC
*
118392 AAAATGCATCGATACATTGA
1 AAAATGTATCGATACATTGA
* *
118412 AAAATGTATCAATACATTCA
1 AAAATGTATCGATACATTGA
* *
118432 TACATGTATCGATACATTGA
1 AAAATGTATCGATACATTGA
118452 AAAATGTATCGATACAT
1 AAAATGTATCGATACAT
118469 CTGGGTACTT
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.44, C:0.14, G:0.12, T:0.30
Consensus pattern (20 bp):
AAAATGTATCGATACATTGA
Found at i:121971 original size:52 final size:52
Alignment explanation
Indices: 121896--122041 Score: 213
Period size: 52 Copynumber: 2.8 Consensus size: 52
121886 AATATGAAAT
*
121896 TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAA
1 TTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAA
**
121948 TTTGCCTATATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAA
1 TTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAA
*** *
122000 TTTG-CTGGCATGTATCGATACAAAGATTAGTGTATCGATACA
1 TTTGCCT-GCATGTATCGATACATTTAATAGTGTATCGATACA
122042 ATGTATCGAT
Statistics
Matches: 84, Mismatches: 9, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
51 2 0.02
52 82 0.98
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.35
Consensus pattern (52 bp):
TTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAA
Found at i:122048 original size:13 final size:13
Alignment explanation
Indices: 122030--122054 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
122020 CAAAGATTAG
122030 TGTATCGATACAA
1 TGTATCGATACAA
122043 TGTATCGATACA
1 TGTATCGATACA
122055 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:122120 original size:19 final size:19
Alignment explanation
Indices: 122096--122145 Score: 91
Period size: 19 Copynumber: 2.6 Consensus size: 19
122086 AGTAGCTTCA
*
122096 TATGTATCGATACAATACT
1 TATGTATCGATACAACACT
122115 TATGTATCGATACAACACT
1 TATGTATCGATACAACACT
122134 TATGTATCGATA
1 TATGTATCGATA
122146 TAAATCATTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.36
Consensus pattern (19 bp):
TATGTATCGATACAACACT
Found at i:122872 original size:48 final size:48
Alignment explanation
Indices: 122818--122997 Score: 245
Period size: 48 Copynumber: 3.8 Consensus size: 48
122808 AGAGGAATGT
* * *
122818 CAATGTGCCAATTCAA-GCTCAACGACATCGAGCCAAGGGAAAAGTGGA
1 CAATGTGCTAATTCAAGGC-CAACGACATTGAGCTAAGGGAAAAGTGGA
* * *
122866 CAATGTGCTTATTCAAGGCCAGCGGCATTGAGCTAAGGGAAAAGTGGA
1 CAATGTGCTAATTCAAGGCCAACGACATTGAGCTAAGGGAAAAGTGGA
* *
122914 CAATATGCTGATTCAAGGCCAACGACATTGAGCTAAGGGAAAAGTGGA
1 CAATGTGCTAATTCAAGGCCAACGACATTGAGCTAAGGGAAAAGTGGA
** *
122962 CAATGTGCTAATTCAAGGCCAGTGACATTGTGCTAA
1 CAATGTGCTAATTCAAGGCCAACGACATTGAGCTAA
122998 TAAAGGTGCC
Statistics
Matches: 116, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
48 114 0.98
49 2 0.02
ACGTcount: A:0.34, C:0.19, G:0.27, T:0.20
Consensus pattern (48 bp):
CAATGTGCTAATTCAAGGCCAACGACATTGAGCTAAGGGAAAAGTGGA
Found at i:123186 original size:30 final size:28
Alignment explanation
Indices: 123133--123728 Score: 305
Period size: 28 Copynumber: 20.2 Consensus size: 28
123123 GGACTTTGAA
*
123133 GCCACCGACTTGTGTAGGCTTTGAAAGGGGAT
1 GCCACTGACTTGTG--GGCTTTG-AAGGGG-T
* * *
123165 GTCACTGACCTGTGAGCTTTGAAGGGGT
1 GCCACTGACTTGTGGGCTTTGAAGGGGT
* *
123193 ACCACTGACTTGTGGGCTGTGAAGGGGT
1 GCCACTGACTTGTGGGCTTTGAAGGGGT
* *
123221 GCCACTGACTTGTGGGCTTTGAAAAGAGTT
1 GCCACTGACTTGTGGGCTTTG--AAGGGGT
* * * *
123251 ACCACCGAATTGTGTGGGCTTTGAAAGGGT
1 GCCACTG-ACT-TGTGGGCTTTGAAGGGGT
** * *
123281 GCCACCAACTTATGGGCTTTGAAAGGGTAT
1 GCCACTGACTTGTGGGCTTTG-AAGGG-GT
* * * *
123311 GCCACTAACTTGTGGTCTTTTGAAGAGAT
1 GCCACTGACTTGTGGGC-TTTGAAGGGGT
* * *
123340 GCCACTGACATGTGGGCTTTGAAAAGAGTT
1 GCCACTGACTTGTGGGCTTTG--AAGGGGT
* *
123370 GCCACCGACTTGTGTGGGCTTTGAAAGGGT
1 GCCACTGAC-T-TGTGGGCTTTGAAGGGGT
* * ***
123400 GCTATTGACTTGTGGGCTTTTGAAGAAAT
1 GCCACTGACTTGTGGGC-TTTGAAGGGGT
* * * *
123429 GACACTTACTTGTGGGCTTTGAAAAGAGTT
1 GCCACTGACTTGTGGGCTTTG--AAGGGGT
* * *
123459 GCCACCGACTTGTGTGGGCTTTGAGAAGGAT
1 GCCACTGAC-T-TGTGGGCTTTGA-AGGGGT
*
123490 GCCACTGACTTATGTGGGCTTTGAAATGGGTT
1 GCCACTGAC-T-TGTGGGCTTTG-AA-GGGGT
* * * * * *
123522 ACCACCGACTTGTGTGGGTTTTCAAATGAGTT
1 GCCACTGAC-T-TGTGGGCTTT-GAA-GGGGT
* ****
123554 GCCACCGACTTGTGTGGGCTTTGAAATAAT
1 GCCACTGAC-T-TGTGGGCTTTGAAGGGGT
* ** *
123584 GCCACTAACTTGTGGGCTTAAAAAAGGGT
1 GCCACTGACTTGTGGGCTT-TGAAGGGGT
123613 GCCACTGACTTGTGGGCTTTGGAA-GGGT
1 GCCACTGACTTGTGGGCTTT-GAAGGGGT
*
123641 GCCACTGACTTGTGGGCTTTGAAAGGGT
1 GCCACTGACTTGTGGGCTTTGAAGGGGT
* * * * *
123669 GCCACAGAGTTGTGGACTTTAAAAGGGT
1 GCCACTGACTTGTGGGCTTTGAAGGGGT
* * * * *
123697 GCCACGGAGTTGTGGAC-TTAAAAGGGT
1 GCCACTGACTTGTGGGCTTTGAAGGGGT
123724 GCCAC
1 GCCAC
123729 GGAGTTATGG
Statistics
Matches: 452, Mismatches: 89, Indels: 51
0.76 0.15 0.09
Matches are distributed among these distances:
27 18 0.04
28 145 0.32
29 74 0.16
30 88 0.19
31 34 0.08
32 93 0.21
ACGTcount: A:0.22, C:0.17, G:0.32, T:0.29
Consensus pattern (28 bp):
GCCACTGACTTGTGGGCTTTGAAGGGGT
Found at i:123267 original size:32 final size:31
Alignment explanation
Indices: 123230--123579 Score: 185
Period size: 32 Copynumber: 11.5 Consensus size: 31
123220 TGCCACTGAC
*
123230 TTGTGGGCTTTGAAAAGAGTTACCACCGAAT
1 TTGTGGGCTTTGAAAAGAGTTGCCACCGAAT
* *
123261 TGTGTGGGCTTTG-AAAG-GGTGCCACC-AAC
1 T-TGTGGGCTTTGAAAAGAGTTGCCACCGAAT
* * * *
123290 TTATGGGCTTTG-AAAGGGTATGCCA-CTAAC
1 TTGTGGGCTTTGAAAAGAGT-TGCCACCGAAT
* * *
123320 TTGTGGTCTTTTG--AAGAGATGCCACTGACA-
1 TTGTGGGC-TTTGAAAAGAGTTGCCACCGA-AT
*
123350 -TGTGGGCTTTGAAAAGAGTTGCCACCGACT
1 TTGTGGGCTTTGAAAAGAGTTGCCACCGAAT
* * ** *
123380 TGTGTGGGCTTTG-AAAG-GGTGCTATTG-AC
1 T-TGTGGGCTTTGAAAAGAGTTGCCACCGAAT
* ** *
123409 TTGTGGGCTTTTGAAGAA-A--TGACA-CTTAC
1 TTGTGGGC-TTTGAA-AAGAGTTGCCACCGAAT
*
123438 TTGTGGGCTTTGAAAAGAGTTGCCACCGACT
1 TTGTGGGCTTTGAAAAGAGTTGCCACCGAAT
* * * *
123469 TGTGTGGGCTTTGAGAAG-GATGCCACTGACT
1 T-TGTGGGCTTTGAAAAGAGTTGCCACCGAAT
* * * *
123500 TATGTGGGCTTTGAAATGGGTTACCACCGACT
1 T-TGTGGGCTTTGAAAAGAGTTGCCACCGAAT
* * * *
123532 TGTGTGGGTTTTCAAATGAGTTGCCACCGACT
1 T-TGTGGGCTTTGAAAAGAGTTGCCACCGAAT
123564 TGTGTGGGCTTTGAAA
1 T-TGTGGGCTTTGAAA
123580 TAATGCCACT
Statistics
Matches: 250, Mismatches: 46, Indels: 45
0.73 0.13 0.13
Matches are distributed among these distances:
27 2 0.01
28 32 0.13
29 34 0.14
30 50 0.20
31 44 0.18
32 88 0.35
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.31
Consensus pattern (31 bp):
TTGTGGGCTTTGAAAAGAGTTGCCACCGAAT
Found at i:123443 original size:89 final size:89
Alignment explanation
Indices: 123203--123688 Score: 402
Period size: 89 Copynumber: 5.4 Consensus size: 89
123193 ACCACTGACT
* * * * * *
123203 TGTGGGCTGTGAAGGGGTGCCACTGACTTGTGGGC-TTTGAAAAGAGTTACCACCGAATTGTGTG
1 TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTTGAAGAGA-TGA-CACTG-ACT-TGTG
* *
123267 GGCTTTG-AAAG-GGTGCCACCAAC-T-
62 GGCTTTGAAAAGAGTTGCCACCGACTTG
* * * * *
123291 TATGGGCTTTGAAAGGGTATGCCACTAACTTGTGGTCTTTTGAAGAGATGCCACTGACATGTGGG
1 TGTGGGCTTTGAAAGGG--TGCCACTGACTTGTGGGCTTTTGAAGAGATGACACTGACTTGTGGG
123356 CTTTGAAAAGAGTTGCCACCGACTTG
64 CTTTGAAAAGAGTTGCCACCGACTTG
* * * *
123382 TGTGGGCTTTGAAAGGGTGCTATTGACTTGTGGGCTTTTGAAGAAATGACACTTACTTGTGGGCT
1 TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTTGAAGAGATGACACTGACTTGTGGGCT
123447 TTGAAAAGAGTTGCCACCGACTTG
66 TTGAAAAGAGTTGCCACCGACTTG
* * * *
123471 TGTGGGCTTTGAGAAGGATGCCACTGACTTATGTGGGC-TTTGAA-ATGGGTTACCACCGACTTG
1 TGTGGGCTTTGA-AAGGGTGCCACTGAC-T-TGTGGGCTTTTGAAGA--GATGA-CACTGAC-T-
* * *
123534 TGTGGGTTTTCAAATGAGTTGCCACCGACTTG
58 TGTGGGCTTTGAAAAGAGTTGCCACCGACTTG
*** * ** * * *
123566 TGTGGGCTTTGAAATAATGCCACTAACTTGTGGGC-TTAAAAAAGGGTGCCACTGACTTGTGGGC
1 TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTTGAAGA-GATGACACTGACTTGTGGGC
* * *
123630 TTTG-GAAG-GGTGCCACTGAC-T-
65 TTTGAAAAGAGTTGCCACCGACTTG
* * *
123651 TGTGGGCTTTGAAAGGGTGCCACAGAGTTGTGGACTTT
1 TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTT
123689 AAAAGGGTGC
Statistics
Matches: 327, Mismatches: 54, Indels: 36
0.78 0.13 0.09
Matches are distributed among these distances:
85 28 0.09
86 3 0.01
87 21 0.06
88 21 0.06
89 99 0.30
90 32 0.10
91 38 0.12
92 24 0.07
93 7 0.02
94 13 0.04
95 41 0.13
ACGTcount: A:0.22, C:0.17, G:0.31, T:0.30
Consensus pattern (89 bp):
TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTTGAAGAGATGACACTGACTTGTGGGCT
TTGAAAAGAGTTGCCACCGACTTG
Found at i:123456 original size:119 final size:117
Alignment explanation
Indices: 123133--123660 Score: 444
Period size: 119 Copynumber: 4.4 Consensus size: 117
123123 GGACTTTGAA
* * * * *
123133 GCCACCGACTTGTGTAGGCTTTGAAAGGGGATGTCACTGACCTGTGAGC-TTTGAAGG-GGT-AC
1 GCCACCGACTTGTGTGGGCTTTGAAA-GGG-TGCCACTGACTTGTGGGCTTTTGAAGGAGATGA-
* * *
123195 CACTGACTTGTGGGCTGTGAAGGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTT
63 CACTGACTTGTGGGCTTTGAAGAGATGCCACTGACTTGTGGGCTTTGAAAAG-GTT
* * ** * *
123251 ACCACCGAATTGTGTGGGCTTTGAAAGGGTGCCACCAACTTATGGGC-TTTGAAAGG-GTATGCC
1 GCCACCGACTTGTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTTG-AAGGAG-ATGAC
* * *
123314 ACTAACTTGTGGTCTTTTGAAGAGATGCCACTGACATGTGGGCTTTGAAAAGAGTT
64 ACTGACTTGTGGGC-TTTGAAGAGATGCCACTGACTTGTGGGCTTTGAAAAG-GTT
* * *
123370 GCCACCGACTTGTGTGGGCTTTGAAAGGGTGCTATTGACTTGTGGGCTTTTGAA-GAAATGACAC
1 GCCACCGACTTGTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTTGAAGGAGATGACAC
* * * * *
123434 TTACTTGTGGGCTTTGAAAAGAGTTGCCACCGACTTGTGTGGGCTTTGAGAAGGAT
66 TGACTTGTGGGCTTTG--AAGAGATGCCACTGAC-T-TGTGGGCTTTGAAAAGGTT
* * * * * * * *
123490 GCCACTGACTTATGTGGGCTTTGAAATGGGTTACCACCGACTTGTGTGGGTTTTCAAATGAGTTG
1 GCCACCGACTTGTGTGGGCTTTGAAA-GGG-TGCCACTGACTTGTG-GGCTTTT-GAAGGAGATG
* * * * ** *
123555 CCACCGACTTGTGTGGGCTTTGAA-ATAATGCCACTAACTTGTGGGCTTAAAAAAGGGT
62 ACACTGAC-T-TGTGGGCTTTGAAGA-GATGCCACTGACTTGTGGGCTTTGAAAAGGTT
* *
123613 GCCACTGAC-T-TGTGGGCTTTGGAAGGGTGCCACTGACTTGTGGGCTTT
1 GCCACCGACTTGTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTT
123661 GAAAGGGTGC
Statistics
Matches: 334, Mismatches: 58, Indels: 36
0.78 0.14 0.08
Matches are distributed among these distances:
116 16 0.05
117 12 0.04
118 59 0.18
119 106 0.32
120 33 0.10
121 31 0.09
122 12 0.04
123 30 0.09
124 4 0.01
125 19 0.06
126 1 0.00
127 11 0.03
ACGTcount: A:0.22, C:0.18, G:0.31, T:0.30
Consensus pattern (117 bp):
GCCACCGACTTGTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTTGAAGGAGATGACAC
TGACTTGTGGGCTTTGAAGAGATGCCACTGACTTGTGGGCTTTGAAAAGGTT
Found at i:123725 original size:27 final size:27
Alignment explanation
Indices: 123605--124102 Score: 546
Period size: 27 Copynumber: 18.1 Consensus size: 27
123595 GTGGGCTTAA
* * *
123605 AAAAGGGTGCCACTGACTTGTGGGCTTT
1 AAAAGGGTGCCACGGAGTTGTGGAC-TT
** * * *
123633 GGAAGGGTGCCACTGACTTGTGGGCTTT
1 AAAAGGGTGCCACGGAGTTGTGGAC-TT
* *
123661 GAAAGGGTGCCACAGAGTTGTGGACTTT
1 AAAAGGGTGCCACGGAGTTGTGGAC-TT
123689 AAAAGGGTGCCACGGAGTTGTGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
*
123716 AAAAGGGTGCCACGGAGTTATGGACTTT
1 AAAAGGGTGCCACGGAGTTGTGGAC-TT
*
123744 AAAAGGTTGCCACGGAGTTGTGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
* * * *
123771 AAAAGGTTGCCACGAAGTTATGGGCTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
* *
123798 ACAAGGGTGCCATGGAGTTGTGGACTTT
1 AAAAGGGTGCCACGGAGTTGTGGAC-TT
* *
123826 AAAAGGTTGCCATGGAGTTGTGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
* *
123853 AAAAGGTTGCCATGGAGTTGTGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
* * *
123880 AAAAGGTTGCCATGGAGTTGTGGATTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
* ** *
123907 AAAAGGTTGCCACAAAGTTGTGGGCTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
* ***
123934 ACAAGGGTGCTGTGGAGTTGTGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
** *
123961 AAAAGTTTGCCACAGAGTTGTGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
* *
123988 AAAAGGTTGCCACGGAGTTGTGGGCTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
* *
124015 AAAAGGGTGCCATGAAGTTGTGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
124042 AAAAAGGGCTGCCACGGAGTTGTGGACTTT
1 -AAAAGGG-TGCCACGGAGTTGTGGAC-TT
* *
124072 AAAAGGTTGCCACGAAGTTGTGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
124099 AAAA
1 AAAA
124103 AGGAATGCCA
Statistics
Matches: 411, Mismatches: 54, Indels: 11
0.86 0.11 0.02
Matches are distributed among these distances:
27 240 0.58
28 147 0.36
29 22 0.05
30 2 0.00
ACGTcount: A:0.26, C:0.14, G:0.33, T:0.27
Consensus pattern (27 bp):
AAAAGGGTGCCACGGAGTTGTGGACTT
Found at i:132527 original size:20 final size:20
Alignment explanation
Indices: 132501--132555 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
132491 AAGAAGACAG
* *
132501 AATGTATTGATACATTCATA
1 AATGTATCGATACATTCAAA
* *
132521 CATGTATCGATACATTGAAA
1 AATGTATCGATACATTCAAA
132541 AATGTATCGATACAT
1 AATGTATCGATACAT
132556 CAGGGTACGT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTCAAA
Found at i:136414 original size:19 final size:19
Alignment explanation
Indices: 136373--136417 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
136363 AAAAAAATAG
***
136373 AATGTATCGATACATTTTC
1 AATGTATCGATACATTGAA
136392 AATGTATCGATACATTGAA
1 AATGTATCGATACATTGAA
136411 AATGTAT
1 AATGTAT
136418 TGATGCATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.38
Consensus pattern (19 bp):
AATGTATCGATACATTGAA
Found at i:138626 original size:165 final size:165
Alignment explanation
Indices: 138415--139183 Score: 610
Period size: 167 Copynumber: 4.6 Consensus size: 165
138405 AATAAATACA
* * ** ** *
138415 AAAAAATT-TAAAACTCAT-AAAATAAATTGATTTTTCAAATACTGATTTAATGGGAATTAAATG
1 AAAAAATTAAAAAACTCATGAAAATGAATAAATTTTTCAAA-ACTGATTTAATAAGAATTAAATA
* * * * *
138478 ATAATATTATATGAATTCTAAAAAATTTCAATCGAAGAAAATTCTTTCGAAAAAATTTATGGAGT
65 ATAATATTATATGAATTTTAAAAATTTTAAACCCAAGAAAATTCTTTCGAAAAAATTTATGGAGT
* *
138543 AGAAAACTCAGTTTTTTAGAAAAATAGGCATTTTAA-G
130 AGAAAACTCA-TTTTTTAGAAAAA-AGGAATTTCAAGG
* * * * ** *
138580 AAAAAA-TAAAAAACTCATGAAAATGGATAAAATTTTCAAAACTGATTTAATGAGAGTTCCATGA
1 AAAAAATTAAAAAACTCATGAAAATGAATAAATTTTTCAAAACTGATTTAATAAGAATTAAATAA
* ** * ** * * *
138644 TATTATTAGCT-ACATTTTAAAAATTTTAAACCAAAGAAAAGCCCCTTAG-AAAAATTTATGGAT
66 TAATATTATATGA-ATTTTAAAAATTTTAAACCCAAGAAAA-TTCTTTCGAAAAAATTTATGGAG
* * * * *
138707 TAGAAAACTTAGTTATTGGAAAAAAAGGGATTTCACA--
129 TAGAAAACTCATTTTTTAG-AAAAAAGGAATTTCA-AGG
* ** * * * * * *
138744 AAAAAACTCTAAAACTCATGAAAATAAATGAATTTTTGAAAAATAATTTAATATA-CATTAAATA
1 AAAAAATTAAAAAACTCATGAAAATGAATAAATTTTTCAAAACTGATTTAATA-AGAATTAAATA
* * * * * * *
138808 ATAATATTTTATGAATTTT-AAAACTTAAAAACCAAGAAAAATCTCCTCGAAAAAATTTATAGAG
65 ATAATATTATATGAATTTTAAAAATTTTAAACCCAAGAAAATTCT-TTCGAAAAAATTTATGGAG
* *
138872 TAGAAAACTCTATTTTTCA-AAAACAAGAAAATTTCAAGG
129 TAGAAAACTC-ATTTTTTAGAAAA-AAG-GAATTTCAAGG
* * * * ** *
138911 AAAAAATTTAAAACCCCATGAAAATGAATAAATTTTTAAAAACTGAACTAATATGAATTAAATAA
1 AAAAAATTAAAAAACTCATGAAAATGAATAAATTTTTCAAAACTGATTTAATAAGAATTAAATAA
* * * * *
138976 TAATATTTTATGAATTTTAAAAATTTTAAACCCATGAAAATT-TTCCCAAAATAATTTACGGAGT
66 TAATATTATATGAATTTTAAAAATTTTAAACCCAAGAAAATTCTTTCGAAAA-AATTTATGGAGT
* * *
139040 AGAAAATTTCATTTTTTGGAAATAAGGAAATTTCAAGG
130 AGAAAA-CTCATTTTTTAGAAAAAAGG-AATTTCAAGG
* * * ** * *
139078 AAAAAATTAAGAAACTCATGAAAATGAATGAATTTTTGAAAACCAATTTATTATGAATTAAATAA
1 AAAAAATTAAAAAACTCATGAAAATGAATAAATTTTTCAAAACTGATTTAATAAGAATTAAATAA
* *
139143 TAATATT-TGATGAATTTTAAAAATTTTAAACCTATGAAAAT
66 TAATATTAT-ATGAATTTTAAAAATTTTAAACCCAAGAAAAT
139184 CCTCCCAAAA
Statistics
Matches: 474, Mismatches: 107, Indels: 44
0.76 0.17 0.07
Matches are distributed among these distances:
163 1 0.00
164 44 0.09
165 172 0.36
166 38 0.08
167 196 0.41
168 23 0.05
ACGTcount: A:0.49, C:0.09, G:0.10, T:0.32
Consensus pattern (165 bp):
AAAAAATTAAAAAACTCATGAAAATGAATAAATTTTTCAAAACTGATTTAATAAGAATTAAATAA
TAATATTATATGAATTTTAAAAATTTTAAACCCAAGAAAATTCTTTCGAAAAAATTTATGGAGTA
GAAAACTCATTTTTTAGAAAAAAGGAATTTCAAGG
Found at i:140308 original size:30 final size:29
Alignment explanation
Indices: 140281--140367 Score: 86
Period size: 30 Copynumber: 2.9 Consensus size: 29
140271 GGCTTGACTG
140281 AATATAATCAAGTGAGGTAAGATTTGACCA
1 AATATAATCAAGTGAGGTAAGATTTGA-CA
* * * **
140311 AGTATAGTCAAATGAATTAAGATTTGACCA
1 AATATAATCAAGTGAGGTAAGATTTGA-CA
*
140341 AATACAATCAAGT-AGGGTAAGATTTGA
1 AATATAATCAAGTGA-GGTAAGATTTGA
140368 TCAAGTACAG
Statistics
Matches: 45, Mismatches: 11, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
29 1 0.02
30 44 0.98
ACGTcount: A:0.44, C:0.09, G:0.20, T:0.28
Consensus pattern (29 bp):
AATATAATCAAGTGAGGTAAGATTTGACA
Found at i:140367 original size:60 final size:60
Alignment explanation
Indices: 140280--140441 Score: 184
Period size: 60 Copynumber: 2.7 Consensus size: 60
140270 AGGCTTGACT
* * * ** *
140280 GAATATAATCAAGT-GAGGTAAGATTTGACCAAGTATAGTCAAATGAATTAAGATTTGACCA
1 GAATACAATCAAGTAG-GGTAAGATTTGACCAAGTACAGTCAAATAAAGAAAGACTTG-CCA
* * *
140341 -AATACAATCAAGTAGGGTAAGATTTGATCAAGTACAGTTAAATAAAGAAAGACTTGGCA
1 GAATACAATCAAGTAGGGTAAGATTTGACCAAGTACAGTCAAATAAAGAAAGACTTGCCA
* * *
140400 GAATACAGTCAAATAGGGTCAGATTTGACCAAGTACAGTCAA
1 GAATACAATCAAGTAGGGTAAGATTTGACCAAGTACAGTCAA
140442 GAAAGGTAAT
Statistics
Matches: 85, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
59 2 0.02
60 82 0.96
61 1 0.01
ACGTcount: A:0.43, C:0.12, G:0.20, T:0.25
Consensus pattern (60 bp):
GAATACAATCAAGTAGGGTAAGATTTGACCAAGTACAGTCAAATAAAGAAAGACTTGCCA
Found at i:140437 original size:30 final size:30
Alignment explanation
Indices: 140296--140594 Score: 146
Period size: 30 Copynumber: 9.9 Consensus size: 30
140286 AATCAAGTGA
*
140296 GGTAAGATTTGACCAAGTATAGTCAAAT-G
1 GGTAAGATTTGACCAAGTACAGTCAAATAG
** * * *
140325 AATTAAGATTTGACCAAATACAATCAAGTAG
1 -GGTAAGATTTGACCAAGTACAGTCAAATAG
* * *
140356 GGTAAGATTTGATCAAGTACAGTTAAATAA
1 GGTAAGATTTGACCAAGTACAGTCAAATAG
* * * * *
140386 AGAAAGACTTG-GCAGAATACAGTCAAATAG
1 GGTAAGATTTGACCA-AGTACAGTCAAATAG
* *
140416 GGTCAGATTTGACCAAGTACAGTCAAGA-AA
1 GGTAAGATTTGACCAAGTACAGTCAA-ATAG
* * * *
140446 GGTAATATTTGATCGAGTACAGTTAAATGAG
1 GGTAAGATTTGACCAAGTACAGTCAAAT-AG
* * * *
140477 GAT-AGTTTTGACCAAATACAGTCAAGA-GG
1 GGTAAGATTTGACCAAGTACAGTCAA-ATAG
* **** *
140506 GGTAAAATTTGAGTGCGTATAGTCAAAT-G
1 GGTAAGATTTGACCAAGTACAGTCAAATAG
* * * * *
140535 AGGAAAGACTTGACTAAGTACAATCAAACGAG
1 -GGTAAGATTTGACCAAGTACAGTCAAA-TAG
140567 GGTGAA-ATTTGACCGAA-TACAGTCAAAT
1 GGT-AAGATTTGACC-AAGTACAGTCAAAT
140595 GTTTCAAACT
Statistics
Matches: 190, Mismatches: 65, Indels: 28
0.67 0.23 0.10
Matches are distributed among these distances:
29 8 0.04
30 152 0.80
31 25 0.13
32 5 0.03
ACGTcount: A:0.41, C:0.12, G:0.22, T:0.25
Consensus pattern (30 bp):
GGTAAGATTTGACCAAGTACAGTCAAATAG
Found at i:140467 original size:60 final size:60
Alignment explanation
Indices: 140403--140595 Score: 167
Period size: 60 Copynumber: 3.2 Consensus size: 60
140393 CTTGGCAGAA
* * *
140403 TACAGTCAAAT-AGGGTCAGATTTGACCAAGTACAGTCAAGAAAGGTAATATTTGATCGAG
1 TACAGTCAAATGAGGAT-AGATTTGACCAAATACAGTCAAGAAAGGTAAAATTTGATCGAG
* * ** *
140463 TACAGTTAAATGAGGATAGTTTTGACCAAATACAGTCAAGAGGGGTAAAATTTGAGT-GCG
1 TACAGTCAAATGAGGATAGATTTGACCAAATACAGTCAAGAAAGGTAAAATTTGA-TCGAG
* * * * * * * * * *
140523 TATAGTCAAATGAGGAAAGACTTGACTAAGTACAATCAA-ACGAGGGTGAAATTTGACCGAA
1 TACAGTCAAATGAGGATAGATTTGACCAAATACAGTCAAGA--AAGGTAAAATTTGATCGAG
140584 TACAGTCAAATG
1 TACAGTCAAATG
140596 TTTCAAACTT
Statistics
Matches: 106, Mismatches: 22, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
59 1 0.01
60 76 0.72
61 29 0.27
ACGTcount: A:0.39, C:0.12, G:0.24, T:0.24
Consensus pattern (60 bp):
TACAGTCAAATGAGGATAGATTTGACCAAATACAGTCAAGAAAGGTAAAATTTGATCGAG
Found at i:140516 original size:90 final size:90
Alignment explanation
Indices: 140332--140517 Score: 205
Period size: 90 Copynumber: 2.1 Consensus size: 90
140322 ATGAATTAAG
* *
140332 ATTTGACCAAATACAATCAAGTAGGGTAAGATTTGATCAAGTACAGTTAAATAAAGAAAGACTTG
1 ATTTGACCAAATACAATCAAGAAAGGTAAGATTTGATCAAGTACAGTTAAATAAAGAAAGACTTG
* * *
140397 GCAGAATACAGTCAAATAGGGTCAG
66 CCAGAATACAGTCAAATAGGGTAAA
* * * * * * * **
140422 ATTTGACCAAGTACAGTCAAGAAAGGTAATATTTGATCGAGTACAGTTAAATGAGGATAGTTTTG
1 ATTTGACCAAATACAATCAAGAAAGGTAAGATTTGATCAAGTACAGTTAAATAAAGAAAGACTTG
*
140487 ACCA-AATACAGTCAAGA-GGGGTAAA
66 -CCAGAATACAGTCAA-ATAGGGTAAA
140512 ATTTGA
1 ATTTGA
140518 GTGCGTATAG
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
90 76 0.96
91 3 0.04
ACGTcount: A:0.41, C:0.11, G:0.22, T:0.25
Consensus pattern (90 bp):
ATTTGACCAAATACAATCAAGAAAGGTAAGATTTGATCAAGTACAGTTAAATAAAGAAAGACTTG
CCAGAATACAGTCAAATAGGGTAAA
Found at i:144835 original size:142 final size:143
Alignment explanation
Indices: 144573--144860 Score: 402
Period size: 142 Copynumber: 2.0 Consensus size: 143
144563 GGGACTTAGA
144573 AAAGGTTTAAGACGAGATGAACCTATCATAAATGCTCACCTTTGGCATAAAAGCAAACCCGGTGA
1 AAAGGTTTAAGACGAGATGAACCTATCATAAATGCTCACCTTTGGCATAAAAGCAAACCCGGTGA
* * ** * * *
144638 CAACTTAGGAGTTGGTTCTGGAAAATTACGAAAATACCTTTAGGGGATACATTCGACGTAGAAGT
66 CAACCTAAGAGTTGGTTCTAAAAAATTACAAAAATACCTTTAAGGGATACATTCGACGTAAAAGT
* *
144703 ACCTGATACCCTT
131 ACCCGATACCCCT
* * *
144716 AAAGGTTTAAGACG-GAATGAACCT-TCCTAAATGCTCACCTTTGGCATAAAAGTAAACCTGGTG
1 AAAGGTTTAAGACGAG-ATGAACCTATCATAAATGCTCACCTTTGGCATAAAAGCAAACCCGGTG
* * *
144779 ACAACCTAAGAGTTAGTT-TCAAAAAATTACAAAAATGCCTTTAAGGGATACCTTCGACGTAAAA
65 ACAACCTAAGAGTTGGTTCT-AAAAAATTACAAAAATACCTTTAAGGGATACATTCGACGTAAAA
144843 GTACCCGATACCCCT
129 GTACCCGATACCCCT
144858 AAA
1 AAA
144861 AGACTTAAAA
Statistics
Matches: 128, Mismatches: 15, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
141 1 0.01
142 105 0.82
143 22 0.17
ACGTcount: A:0.37, C:0.20, G:0.19, T:0.25
Consensus pattern (143 bp):
AAAGGTTTAAGACGAGATGAACCTATCATAAATGCTCACCTTTGGCATAAAAGCAAACCCGGTGA
CAACCTAAGAGTTGGTTCTAAAAAATTACAAAAATACCTTTAAGGGATACATTCGACGTAAAAGT
ACCCGATACCCCT
Found at i:150667 original size:13 final size:13
Alignment explanation
Indices: 150649--150674 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
150639 TACACAAAGT
150649 ATGTATCGATACA
1 ATGTATCGATACA
150662 ATGTATCGATACA
1 ATGTATCGATACA
150675 CCAAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:150672 original size:32 final size:33
Alignment explanation
Indices: 150631--150694 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
150621 TAACCAAACT
**
150631 TGTATCGATACA-CAAAGTATGTATCGATACAA
1 TGTATCGATACACCAAAAAATGTATCGATACAA
150663 TGTATCGATACACCAAAAAATGTATCGATACA
1 TGTATCGATACACCAAAAAATGTATCGATACA
150695 TTAGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.27
Consensus pattern (33 bp):
TGTATCGATACACCAAAAAATGTATCGATACAA
Found at i:156845 original size:13 final size:13
Alignment explanation
Indices: 156827--156852 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
156817 ACATCTTTCT
156827 TTGTATCGATACA
1 TTGTATCGATACA
156840 TTGTATCGATACA
1 TTGTATCGATACA
156853 GGGGGTTTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:158757 original size:20 final size:22
Alignment explanation
Indices: 158718--158758 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
158708 AAATTTTTTA
*
158718 AAATTATCTTATTAAGGGGGAG
1 AAATTATCTTATTAAAGGGGAG
158740 AAATTAT-TT-TTAAAGGGGA
1 AAATTATCTTATTAAAGGGGA
158759 AAGAAAAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
21 2 0.11
22 7 0.39
ACGTcount: A:0.39, C:0.02, G:0.24, T:0.34
Consensus pattern (22 bp):
AAATTATCTTATTAAAGGGGAG
Found at i:159600 original size:299 final size:299
Alignment explanation
Indices: 159062--159648 Score: 1165
Period size: 299 Copynumber: 2.0 Consensus size: 299
159052 GGAATTATTC
159062 TGAAAATACCAAAAATGTGTTTTATTCAATTAAGTACTTTATAATTTTGTACCAAATGATTTTTG
1 TGAAAATACCAAAAATGTGTTTTATTCAATTAAGTACTTTATAATTTTGTACCAAATGATTTTTG
159127 ATTCACCAAATGTTTTCTAGTTAAGTATAAATGTTTTCAAGGCTTAAAATGATTGATGTTTAAGA
66 ATTCACCAAATGTTTTCTAGTTAAGTATAAATGTTTTCAAGGCTTAAAATGATTGATGTTTAAGA
*
159192 TAAAATAGATCAAAGTATCGATACATAGGTATTTGTATCGATACATTAAGTTTGACTTAGGCTAA
131 TAAAATAGATCAAAGTATCGATACATAGGTATTTGTATCGATACATTAAGGTTGACTTAGGCTAA
159257 AATGGTCAAAACCCTTAAAAGTATCGATACACAATTCAAAGTATCGATACATGTTGCAATGTATC
196 AATGGTCAAAACCCTTAAAAGTATCGATACACAATTCAAAGTATCGATACATGTTGCAATGTATC
159322 GATACATGAAAAAGATGTATCGATACATCTTTATAATTT
261 GATACATGAAAAAGATGTATCGATACATCTTTATAATTT
159361 TGAAAATACCAAAAATGTGTTTTATTCAATTAAGTACTTTATAATTTTGTACCAAATGATTTTTG
1 TGAAAATACCAAAAATGTGTTTTATTCAATTAAGTACTTTATAATTTTGTACCAAATGATTTTTG
159426 ATTCACCAAATGTTTTCTAGTTAAGTATAAATGTTTTCAAGGCTTAAAATGATTGATGTTTAAGA
66 ATTCACCAAATGTTTTCTAGTTAAGTATAAATGTTTTCAAGGCTTAAAATGATTGATGTTTAAGA
159491 TAAAATAGATCAAAGTATCGATACATAGGTATTTGTATCGATACATTAAGGTTGACTTAGGCTAA
131 TAAAATAGATCAAAGTATCGATACATAGGTATTTGTATCGATACATTAAGGTTGACTTAGGCTAA
159556 AATGGTCAAAACCCTTAAAAGTATCGATACACAATTCAAAGTATCGATACATGTTGCAATGTATC
196 AATGGTCAAAACCCTTAAAAGTATCGATACACAATTCAAAGTATCGATACATGTTGCAATGTATC
159621 GATACATGAAAAAGATGTATCGATACAT
261 GATACATGAAAAAGATGTATCGATACAT
159649 GTCATTGGGA
Statistics
Matches: 287, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
299 287 1.00
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.35
Consensus pattern (299 bp):
TGAAAATACCAAAAATGTGTTTTATTCAATTAAGTACTTTATAATTTTGTACCAAATGATTTTTG
ATTCACCAAATGTTTTCTAGTTAAGTATAAATGTTTTCAAGGCTTAAAATGATTGATGTTTAAGA
TAAAATAGATCAAAGTATCGATACATAGGTATTTGTATCGATACATTAAGGTTGACTTAGGCTAA
AATGGTCAAAACCCTTAAAAGTATCGATACACAATTCAAAGTATCGATACATGTTGCAATGTATC
GATACATGAAAAAGATGTATCGATACATCTTTATAATTT
Found at i:159716 original size:13 final size:13
Alignment explanation
Indices: 159698--159723 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
159688 TACACAAAGT
159698 ATGTATCGATACA
1 ATGTATCGATACA
159711 ATGTATCGATACA
1 ATGTATCGATACA
159724 TTAGCTTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:162630 original size:155 final size:155
Alignment explanation
Indices: 162435--162778 Score: 424
Period size: 155 Copynumber: 2.2 Consensus size: 155
162425 ATCCTTCAAA
* * *
162435 GATACCTTCGACGTAGAAGTACTTGATACCCCTAGAGGACTTAAAAAGGATTAT-AAATGGGATG
1 GATACCTTCGACGTAGAAGTACCTGACACCCCTAAAGGACTTAAAAAGGATTATGAAA-GGGATG
* * * *
162499 AACCTATCCTAAATACCCACCTTCGGCATAAAAGTGGACCCGGTGACAACCTAAGACTTGGTTCT
65 AACCTATCCTAAATACCCACCTTCGGCATAAAAGCGAACCCGGTGACAACCTAAGACTCGGTTAT
* *
162564 AAAAAATTACCAAAATGCCCTTACG-G
130 AAAAAATCACAAAAATGCCCTTA-GAG
* * *
162590 GATACCTTTGACGTAGAAGTGCCCTG-CACCCCTAAAGGACTTAAAAAGGATTTTGAAAGGGATG
1 GATACCTTCGACGTAGAAGT-ACCTGACACCCCTAAAGGACTTAAAAAGGATTATGAAAGGGATG
* ** * ** *
162654 AACCTATCCTAAATATCCATTTTTGGCATAAAAGCGAACTTGGTGACAACCTAGGACTCGGTTAT
65 AACCTATCCTAAATACCCACCTTCGGCATAAAAGCGAACCCGGTGACAACCTAAGACTCGGTTAT
* *
162719 GAAAAATCATAAAAATGCCCTTAGAG
130 AAAAAATCACAAAAATGCCCTTAGAG
* * *
162745 GATACCTTCGACATAAAAGTACCTGATACCCCTA
1 GATACCTTCGACGTAGAAGTACCTGACACCCCTA
162779 GTGGACACTA
Statistics
Matches: 159, Mismatches: 26, Indels: 8
0.82 0.13 0.04
Matches are distributed among these distances:
154 5 0.03
155 148 0.93
156 6 0.04
ACGTcount: A:0.35, C:0.22, G:0.19, T:0.24
Consensus pattern (155 bp):
GATACCTTCGACGTAGAAGTACCTGACACCCCTAAAGGACTTAAAAAGGATTATGAAAGGGATGA
ACCTATCCTAAATACCCACCTTCGGCATAAAAGCGAACCCGGTGACAACCTAAGACTCGGTTATA
AAAAATCACAAAAATGCCCTTAGAG
Found at i:164695 original size:166 final size:163
Alignment explanation
Indices: 164483--165094 Score: 619
Period size: 166 Copynumber: 3.7 Consensus size: 163
164473 TATTAGACAC
** * * * * * * *
164483 ATTTTAAAAATTTTAGACCAAGGAAAATCCCCCCATAAATATTTATGGAATAGAAAAATTGATTT
1 ATTTTAAAAATTAAAAACTAAGAAAAAT-CCCCCAAAAAAATTTATGGAGTAGAAAACTT-ATTT
* ** * *
164548 TTCGAGAAA-AGGAGAATTTCAAGGAAAAAAA-TAAAAACTCATGAAGATGAATGAATTTTTGAA
64 TTCGA-AAATAGGAAAATTTCAA-GAAAAAAATTAAAAACTCACAAAAATGAAT-AATTTTTAAA
** ** *
164611 AACTGATTTTATATGAAATAAATAATAATATTTGATAA
126 AACAAATTAAATATGAATTAAATAATAATATTTGATAA
*
164649 ATTTTAAAAATTAAAAACTAAGAAAAATCGCCCCGAAAAAATTTATGGAGTAGAAAACTTCATAT
1 ATTTTAAAAATTAAAAACTAAGAAAAATC-CCCCAAAAAAATTTATGGAGTAGAAAACTT-AT-T
** * *
164714 TTT-GAAAATAAAAAAATTTCAAGAAAAAAACTTTAAATACTCACAAAAATGAATAAATTTTAAA
63 TTTCGAAAATAGGAAAATTTCAAGAAAAAAA--TTAAAAACTCACAAAAATGAATAATTTTTAAA
*
164778 ACACAAATTAAATATGAATTTAATAATAATATTTGATAA
126 A-ACAAATTAAATATGAATTAAATAATAATATTTGATAA
* * *
164817 ATTTTAAAAATTAAAAACTAAGAAAAATCTCCCCAAAAAAATTTACGGAGTAGAAAACTTCTATT
1 ATTTTAAAAATTAAAAACTAAGAAAAATC-CCCCAAAAAAATTTATGGAGTAGAAAACTTATTTT
* *
164882 TCGAAAATAGGAAAATTTCAAGAAAAAAATTTAAAAACTCGCAAAAATGAATAAATTTCTAAAAA
65 TCGAAAATAGGAAAATTTCAAGAAAAAAA-TTAAAAACTCACAAAAATGAAT-AATTTTTAAAAA
164947 CAAATTAAATATGAATTAAATAATAATATTTGATAA
128 CAAATTAAATATGAATTAAATAATAATATTTGATAA
* * * * * *
164983 ATTTTAAAAATTTTAAACCTATG-AAAATCCTCCTAAAAAATTTTATGGAGAAGAAAATCCTGTA
1 ATTTTAAAAA-TTAAAAACTAAGAAAAATCC-CCCAAAAAAATTTATGGAGTAGAAAA--CT-TA
* * * * *
165047 -GTTT-GAAAATAGAAAGAATTTCAA-AAGAAAGTTAATAACTCA-AAAAAT
61 TTTTTCGAAAATAGGAA-AATTTCAAGAAAAAAATTAAAAACTCACAAAAAT
165095 AAAAGAAAAT
Statistics
Matches: 379, Mismatches: 52, Indels: 31
0.82 0.11 0.07
Matches are distributed among these distances:
165 19 0.05
166 169 0.45
167 72 0.19
168 118 0.31
169 1 0.00
ACGTcount: A:0.52, C:0.09, G:0.10, T:0.29
Consensus pattern (163 bp):
ATTTTAAAAATTAAAAACTAAGAAAAATCCCCCAAAAAAATTTATGGAGTAGAAAACTTATTTTT
CGAAAATAGGAAAATTTCAAGAAAAAAATTAAAAACTCACAAAAATGAATAATTTTTAAAAACAA
ATTAAATATGAATTAAATAATAATATTTGATAA
Found at i:164826 original size:168 final size:165
Alignment explanation
Indices: 164562--165094 Score: 639
Period size: 166 Copynumber: 3.2 Consensus size: 165
164552 AGAAAAGGAG
** * * * * ** **
164562 AATTTCAAGGAAAAAAA--TAAAAACTCATGAAGATGAATGAATTTTTGAAAACTGATTTTATAT
1 AATTTCAA-GAAAAAAATTTAAAAACTCACAAAAATGAATAAATTTCTAAAAACAAATTAAATAT
* *
164625 GAAATAAATAATAATATTTGATAAATTTTAAAAATTAAAAACTAAGAAAAATCGCCCCGAAAAAA
65 GAATTAAATAATAATATTTGATAAATTTTAAAAATTAAAAACTAAGAAAAATC-CCCCAAAAAAA
164690 TTTATGGAGTAGAAAACTTCATATTTTGAAAATAAAAA
129 TTTATGGAGTAGAAAACTTC-TATTTTGAAAATAAAAA
*
164728 AATTTCAAGAAAAAAACTTTAAATACTCACAAAAATGAATAAATTT-TAAAACACAAATTAAATA
1 AATTTCAAGAAAAAAA-TTTAAAAACTCACAAAAATGAATAAATTTCTAAAA-ACAAATTAAATA
*
164792 TGAATTTAATAATAATATTTGATAAATTTTAAAAATTAAAAACTAAGAAAAATCTCCCCAAAAAA
64 TGAATTAAATAATAATATTTGATAAATTTTAAAAATTAAAAACTAAGAAAAATC-CCCCAAAAAA
* * **
164857 ATTTACGGAGTAGAAAACTTCTATTTCGAAAATAGGAA
128 ATTTATGGAGTAGAAAACTTCTATTTTGAAAATAAAAA
*
164895 AATTTCAAGAAAAAAATTTAAAAACTCGCAAAAATGAATAAATTTCTAAAAACAAATTAAATATG
1 AATTTCAAGAAAAAAATTTAAAAACTCACAAAAATGAATAAATTTCTAAAAACAAATTAAATATG
* * * * *
164960 AATTAAATAATAATATTTGATAAATTTTAAAAATTTTAAACCTATG-AAAATCCTCCTAAAAAAT
66 AATTAAATAATAATATTTGATAAATTTTAAAAA-TTAAAAACTAAGAAAAATCC-CCCAAAAAAA
* * * * *
165024 TTTATGGAGAAGAAAATCCTGTAGTTTGAAAATAGAAAG
129 TTTATGGAGTAGAAAA-CTTCTATTTTGAAAATA-AAAA
* * *
165063 AATTTC-A-AAAGAAAGTTAATAACTCA-AAAAAT
1 AATTTCAAGAAAAAAATTTAAAAACTCACAAAAAT
165095 AAAAGAAAAT
Statistics
Matches: 319, Mismatches: 39, Indels: 19
0.85 0.10 0.05
Matches are distributed among these distances:
165 15 0.05
166 124 0.39
167 62 0.19
168 118 0.37
ACGTcount: A:0.53, C:0.09, G:0.09, T:0.29
Consensus pattern (165 bp):
AATTTCAAGAAAAAAATTTAAAAACTCACAAAAATGAATAAATTTCTAAAAACAAATTAAATATG
AATTAAATAATAATATTTGATAAATTTTAAAAATTAAAAACTAAGAAAAATCCCCCAAAAAAATT
TATGGAGTAGAAAACTTCTATTTTGAAAATAAAAA
Found at i:167863 original size:33 final size:33
Alignment explanation
Indices: 167821--167885 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
167811 CTTGAGGCAA
*
167821 TGTATCGATACAATTGT-TCATGTATCAATACAT
1 TGTATCGATAC-ATTGTGCCATGTATCAATACAT
*
167854 TGTATCGATACATTGTGCCATGTATCGATACA
1 TGTATCGATACATTGTGCCATGTATCAATACA
167886 AATAGTGGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 5 0.17
33 24 0.83
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37
Consensus pattern (33 bp):
TGTATCGATACATTGTGCCATGTATCAATACAT
Found at i:167974 original size:13 final size:13
Alignment explanation
Indices: 167956--167980 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
167946 ACAATGAACA
167956 TGTATCGATACAT
1 TGTATCGATACAT
167969 TGTATCGATACA
1 TGTATCGATACA
167981 AAGCATAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:167997 original size:33 final size:32
Alignment explanation
Indices: 167937--168001 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 32
167927 CATTTGTTTG
*
167937 TGTATCGATACAATGAACATGTATCGATACAT
1 TGTATCGATACAAAGAACATGTATCGATACAT
167969 TGTATCGATACAAAGCATA-ATGTATCGATACAT
1 TGTATCGATACAAAG-A-ACATGTATCGATACAT
168002 CTAAAAGTGT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 14 0.47
33 15 0.50
34 1 0.03
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (32 bp):
TGTATCGATACAAAGAACATGTATCGATACAT
Found at i:173344 original size:22 final size:22
Alignment explanation
Indices: 173319--173372 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 22
173309 TTTGCTTTTG
* *
173319 CTTGCTGTTTCGTTTTTCCTTA
1 CTTGCTATTTCATTTTTCCTTA
*
173341 CTTGCTATTTCATTTTTCCTTG
1 CTTGCTATTTCATTTTTCCTTA
*
173363 CCTGCTATTT
1 CTTGCTATTT
173373 TGGTTTTACT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.07, C:0.24, G:0.11, T:0.57
Consensus pattern (22 bp):
CTTGCTATTTCATTTTTCCTTA
Done.