Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold27
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2789374
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 115785 characters in sequence are not A, C, G, or T
File 10 of 16
Found at i:1632483 original size:18 final size:17
Alignment explanation
Indices: 1632460--1632524 Score: 69
Period size: 17 Copynumber: 3.6 Consensus size: 17
1632450 ACCAAATCCC
*
1632460 AAAAAAGCAAAACAT-AA
1 AAAAAAACAAAA-ATAAA
*
1632477 AAAAAAACAAAAAAAGCAA
1 AAAAAAACAAAAATA--AA
1632496 AAAAAAACAAAAAATAAA
1 AAAAAAAC-AAAAATAAA
1632514 AAAAAAACAAA
1 AAAAAAACAAA
1632525 TGAAACCCTA
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
16 1 0.02
17 14 0.34
18 10 0.24
19 10 0.24
20 6 0.15
ACGTcount: A:0.85, C:0.09, G:0.03, T:0.03
Consensus pattern (17 bp):
AAAAAAACAAAAATAAA
Found at i:1632490 original size:19 final size:17
Alignment explanation
Indices: 1632460--1632524 Score: 76
Period size: 19 Copynumber: 3.6 Consensus size: 17
1632450 ACCAAATCCC
* * *
1632460 AAAAAAGCAAAACATAA
1 AAAAAAACAAAAAAAAA
1632477 AAAAAAACAAAAAAAGCAA
1 AAAAAAACAAAAAAA--AA
1632496 AAAAAAACAAAAAATAAA
1 AAAAAAACAAAAAA-AAA
1632514 AAAAAAACAAA
1 AAAAAAACAAA
1632525 TGAAACCCTA
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
17 12 0.29
18 13 0.31
19 16 0.38
20 1 0.02
ACGTcount: A:0.85, C:0.09, G:0.03, T:0.03
Consensus pattern (17 bp):
AAAAAAACAAAAAAAAA
Found at i:1632494 original size:26 final size:26
Alignment explanation
Indices: 1632460--1632517 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 26
1632450 ACCAAATCCC
*
1632460 AAAAAAGCAAAACATAAA-AAAAAACA
1 AAAAAAGCAAAA-AAAAACAAAAAACA
*
1632486 AAAAAAGCAAAAAAAAACAAAAAATA
1 AAAAAAGCAAAAAAAAACAAAAAACA
1632512 AAAAAA
1 AAAAAA
1632518 AAACAAATGA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 4 0.14
26 25 0.86
ACGTcount: A:0.84, C:0.09, G:0.03, T:0.03
Consensus pattern (26 bp):
AAAAAAGCAAAAAAAAACAAAAAACA
Found at i:1632953 original size:18 final size:18
Alignment explanation
Indices: 1632930--1632972 Score: 86
Period size: 18 Copynumber: 2.4 Consensus size: 18
1632920 AAAGAAATAG
1632930 AAATTGATGAAAAATGAC
1 AAATTGATGAAAAATGAC
1632948 AAATTGATGAAAAATGAC
1 AAATTGATGAAAAATGAC
1632966 AAATTGA
1 AAATTGA
1632973 GTTCCTTGCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.56, C:0.05, G:0.16, T:0.23
Consensus pattern (18 bp):
AAATTGATGAAAAATGAC
Found at i:1633538 original size:152 final size:151
Alignment explanation
Indices: 1633159--1633596 Score: 370
Period size: 156 Copynumber: 2.9 Consensus size: 151
1633149 ATATTCCTCA
* * * * * *
1633159 TCATGATCTTCTA-TTTCAACTCA-TCATCAGCTGATTTCAG-CTATTGATAAGAAATTTTAGAA
1 TCATGATCTTCTACTTT-AGCCCACT-ATCAACTGATTT-AGACTATTAATAGGAAACTTTAGAA
* * * * * * *
1633221 ACTACATATTCCCTATCATGATTTTCTACTTCAGCTCACACTATCAACTTATTTC-AGTTGTTGA
63 ACCACATATTCCCCATCATGATCTTCTACTT-TGCT--CACTATCAACTTATTTCGA-CTATCGA
* ** * * *
1633285 TAG-GAAATTTTAAAAACCATATATTCCTCG
124 TAGAAAAATCATAAAAA--ACAT-CTCCCCG
* * * * * **
1633315 TCATGATCTTCTACTTTAGCCCATTATCAGCTTATTTAGGCTATTGATAGGAAACTTTAGAAATG
1 TCATGATCTTCTACTTTAGCCCACTATCAACTGATTTAGACTATTAATAGGAAACTTTAGAAACC
* * * *
1633380 ACATATTCCCCATCATGATCTTCTATTTTAGCTCATTATTAACTTATTTCGGCTATCGAT-GAAA
66 ACATATTCCCCATCATGATCTTCTACTTT-GCTCACTATCAACTTATTTCGACTATCGATAGAAA
1633444 AATCATAAAAAACATCTCCCCG
130 AATCATAAAAAACATCTCCCCG
* *
1633466 TCATGATCTTTTACTTTAGCCCCACTATCAACTGATTTTA-ACTATTAATGGGAAA-TCTTAGAA
1 TCATGATCTTCTACTTTAG-CCCACTATCAACTGA-TTTAGACTATTAATAGGAAACT-TTAGAA
** * *
1633529 ACCACATATTTTCCATCATGATCTTCTACTTTGGTCACTATCAACTTATTTCGACTATTGATAGA
63 ACCACATATTCCCCATCATGATCTTCTACTTTGCTCACTATCAACTTATTTCGACTATCGATAGA
1633594 AAA
128 AAA
1633597 TTTTAGAAAC
Statistics
Matches: 232, Mismatches: 40, Indels: 24
0.78 0.14 0.08
Matches are distributed among these distances:
151 49 0.21
152 65 0.28
153 5 0.02
154 30 0.13
155 2 0.01
156 77 0.33
157 4 0.02
ACGTcount: A:0.31, C:0.21, G:0.10, T:0.38
Consensus pattern (151 bp):
TCATGATCTTCTACTTTAGCCCACTATCAACTGATTTAGACTATTAATAGGAAACTTTAGAAACC
ACATATTCCCCATCATGATCTTCTACTTTGCTCACTATCAACTTATTTCGACTATCGATAGAAAA
ATCATAAAAAACATCTCCCCG
Found at i:1633869 original size:76 final size:76
Alignment explanation
Indices: 1633096--1633915 Score: 571
Period size: 76 Copynumber: 10.7 Consensus size: 76
1633086 TAATTTGTTT
* * * * *
1633096 TTTAGCTCACTATCAGCTGT-TTTTGGCTATTGATAAGAAATTTTAGAGACCACATATT-CCTCA
1 TTTAGCTCATTATCAACT-TATTTTGGCTATTGATAGGAAATTATA-AAACCACATATTCCCT-A
1633159 TCATGATCTTCTA-
63 TCATGATCTTCTAC
* * * * ** * * *
1633172 TTTCAACTCATCATCAGCTGATTTCAGCTATTGATAAGAAATTTTAGAAACTACATATTCCCTAT
1 TTT-AGCTCATTATCAACTTATTTTGGCTATTGATAGGAAATTATA-AAACCACATATTCCCTAT
*
1633237 CATGATTTTCTAC
64 CATGATCTTCTAC
* * ** * * * *
1633250 TTCAGCTCACACTATCAACTTATTTCAGTTGTTGATAGGAAATTTTAAAAACCATATATT-CCTC
1 TTTAGCT--CATTATCAACTTATTTTGGCTATTGATAGGAAATTAT-AAAACCACATATTCCCT-
*
1633314 GTCATGATCTTCTAC
62 ATCATGATCTTCTAC
* * * ** *
1633329 TTTAGCCCATTATCAGCTTATTTAGGCTATTGATAGGAAACTT-TAGAAATGACATATTCCCCAT
1 TTTAGCTCATTATCAACTTATTTTGGCTATTGATAGGAAA-TTATA-AAACCACATATTCCCTAT
*
1633393 CATGATCTTCTAT
64 CATGATCTTCTAC
* * * * * * * **
1633406 TTTAGCTCATTATTAACTTATTTCGGCTATCGAT-GAAAAATCATAAAA-AACAT-CTCCCCGTC
1 TTTAGCTCATTATCAACTTATTTTGGCTATTGATAG-GAAATTATAAAACCACATATTCCCTATC
*
1633468 ATGATCTTTTAC
65 ATGATCTTCTAC
* * * ** * * *
1633480 TTTAGCCCCACTATCAACTGATTTTAACTATTAATGGGAAATCT-TAGAAACCACATATTTTCC-
1 TTTAG-CTCATTATCAACTTATTTTGGCTATTGATAGGAAAT-TATA-AAACCACATA-TTCCCT
1633543 ATCATGATCTTCTAC
62 ATCATGATCTTCTAC
* * * * * *
1633558 TTT-GGTCACTATCAACTTATTTCGACTATTGATAGAAAATTTTAGAAACCACATATTACCC-AT
1 TTTAGCTCATTATCAACTTATTTTGGCTATTGATAGGAAATTATA-AAACCACATATT-CCCTAT
1633621 CATGATCTTCTAC
64 CATGATCTTCTAC
** * * * * *
1633634 TTTAGCTTGTTATCAGCTTATTTTGGCCT-TTAATAGGAAATTATATAACCATATATT-GCTAAT
1 TTTAGCTCATTATCAACTTATTTTGG-CTATTGATAGGAAATTATAAAACCACATATTCCCT-AT
1633697 CATGATCTTCTAC
64 CATGATCTTCTAC
** * * * * *
1633710 TTTAGCTTGTTATCAGCTTATTTTGTCCT-TTGATAGGAAATTATATAACCATATATT-GCTAAT
1 TTTAGCTCATTATCAACTTATTTTG-GCTATTGATAGGAAATTATAAAACCACATATTCCCT-AT
1633773 CATGATCTTCTA-
64 CATGATCTTCTAC
* *
1633785 TTATAGCTTATTATCAACTTATTTTGGCTATTGATAAGAAATTATAAAACCACATATTCCCTATC
1 TT-TAGCTCATTATCAACTTATTTTGGCTATTGATAGGAAATTATAAAACCACATATTCCCTATC
1633850 ATGATCTTCTA-
65 ATGATCTTCTAC
** *** * * *
1633861 TTGTAGCTTTTTATCCGTTTATTTTGCCTATTAAT-GGAAATTGAAAAAACCACAT
1 TT-TAGCTCATTATCAACTTATTTTGGCTATTGATAGGAAATT-ATAAAACCACAT
1633916 GTTTCTCAAT
Statistics
Matches: 609, Mismatches: 104, Indels: 62
0.79 0.13 0.08
Matches are distributed among these distances:
74 23 0.04
75 43 0.07
76 270 0.44
77 181 0.30
78 30 0.05
79 61 0.10
80 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.11, T:0.39
Consensus pattern (76 bp):
TTTAGCTCATTATCAACTTATTTTGGCTATTGATAGGAAATTATAAAACCACATATTCCCTATCA
TGATCTTCTAC
Found at i:1634475 original size:82 final size:82
Alignment explanation
Indices: 1634213--1635000 Score: 532
Period size: 82 Copynumber: 9.7 Consensus size: 82
1634203 GGTTAACCTC
* * * * * * *
1634213 TCTAACCTATTGGCTTTATAG-GTTCGCCTTGGCCAACCCTTTTAATTGGTTGATTTTATTGGTT
1 TCTAACCTATTGGCTTTATCGATTTTGCCTTGGCCAACCCCTCTAATTGGTTGACTTTATTAGTT
* *
1634277 TTGA-CCTGGTTAA-CCT
66 TT-ACCCTAGTCAACCCT
* * *
1634293 CTCTAACCTATTGGCTTTATC-AGTTTTGCCCTAGCCAA-CCCTCTAATTGGTTGACTTTATCAG
1 -TCTAACCTATTGGCTTTATCGA-TTTTGCCTTGGCCAACCCCTCTAATTGGTTGACTTTATTAG
* *** *
1634356 TTTCATTTTAGACAACCTCT
64 TTTTACCCTAGTCAACC-CT
* * * *
1634376 T-TAACTTATTAGCTTTATCGATTTTGCCTTAGG-CAACCCCTTTAATTGGTTGA-TTTCATTGG
1 TCTAACCTATTGGCTTTATCGATTTTGCCTT-GGCCAACCCCTCTAATTGGTTGACTTT-ATTAG
*
1634438 TTTTACCCTAGTCAATCCT
64 TTTTACCCTAGTCAACCCT
* * * * * *
1634457 T-TCAACCTGTTGGTTTTATTTG-TTTTGCCTTAGCCAACACCTCTAATTGGTAGACTTTATTAG
1 TCT-AACCTATTGGCTTTA-TCGATTTTGCCTTGGCCAACCCCTCTAATTGGTTGACTTTATTAG
* * * **
1634520 TTTTGCCTTATTCAACGTT
64 TTTTACCCTAGTCAACCCT
* * * * * ** ** * *
1634539 TCAAATCTCTTGCCTTTATCGGTTTTGCCCAGGCCAACTTCTCTAATTTGTTGACTTTATCAGTT
1 TCTAACCTATTGGCTTTATCGATTTTGCCTTGGCCAACCCCTCTAATTGGTTGACTTTATTAGTT
* * *
1634604 TTGCCCTGGTCAACCCC
66 TTACCCTAGTCAACCCT
* * * * *
1634621 TCTAACCTATTAGCTTTATC-AGTTTTGCCTTGGCCAACTCCTCAAATTAGTTGA-TGTTA-TCG
1 TCTAACCTATTGGCTTTATCGA-TTTTGCCTTGGCCAACCCCTCTAATTGGTTGACT-TTATTAG
* * *
1634683 TTTCACCTTAGTTAACCCT
64 TTTTACCCTAGTCAACCCT
* * * * *
1634702 TCTAACCTGTTGGCTTTATTGATTTTGCCTTGGCCAACTCCTTTAATTGGTTAACTTTATTAGTT
1 TCTAACCTATTGGCTTTATCGATTTTGCCTTGGCCAACCCCTCTAATTGGTTGACTTTATTAGTT
* * *
1634767 TTGCCTTAGTTAACCCT
66 TTACCCTAGTCAACCCT
* * * * *
1634784 TCTAACCTATTGGTTTTATC-AGTTTTGCCTTGGCCAACCCCACTATTTGGTTGACATTATTGGT
1 TCTAACCTATTGGCTTTATCGA-TTTTGCCTTGGCCAACCCCTCTAATTGGTTGACTTTATTAGT
*
1634848 TTTATCCC-GGTCAACCCT
65 TTTA-CCCTAGTCAACCCT
* * * * * * * * * *
1634866 TCTAACCTATTGGTTTTATCAATTTT-ACTTGGCCAACTCTTTTAGTTGGTTAACTTTATAATTT
1 TCTAACCTATTGGCTTTATCGATTTTGCCTTGGCCAACCCCTCTAATTGGTTGACTTTATTAGTT
* * *
1634930 TTGCCTTGGTCAA-CCT
66 TTACCCTAGTCAACCCT
* * * * ** *
1634946 CTCTAA-CTATTGGCTTTACCGATTTTACCCTAGCCAACCTTTTTAATTGGTTGAC
1 -TCTAACCTATTGGCTTTATCGATTTTGCCTTGGCCAACCCCTCTAATTGGTTGAC
1635001 AATATCAATT
Statistics
Matches: 550, Mismatches: 131, Indels: 52
0.75 0.18 0.07
Matches are distributed among these distances:
80 23 0.04
81 208 0.38
82 309 0.56
83 10 0.02
ACGTcount: A:0.20, C:0.23, G:0.14, T:0.43
Consensus pattern (82 bp):
TCTAACCTATTGGCTTTATCGATTTTGCCTTGGCCAACCCCTCTAATTGGTTGACTTTATTAGTT
TTACCCTAGTCAACCCT
Found at i:1634624 original size:41 final size:41
Alignment explanation
Indices: 1634478--1634843 Score: 175
Period size: 41 Copynumber: 9.0 Consensus size: 41
1634468 GGTTTTATTT
* * * * *
1634478 GTTTTGCCTTAGCCAACACCTCTAATTGGTAGACTTTATTA
1 GTTTTGCCTTGGCCAACCCCTCTAATTTGTTGACTTTATCA
*** *** * * * * *
1634519 GTTTTGCCTTATTCAACGTTTCAAATCTCTTGCCTTTATCG
1 GTTTTGCCTTGGCCAACCCCTCTAATTTGTTGACTTTATCA
** **
1634560 GTTTTGCCCAGGCCAACTTCTCTAATTTGTTGACTTTATCA
1 GTTTTGCCTTGGCCAACCCCTCTAATTTGTTGACTTTATCA
* * ** *
1634601 GTTTTGCCCTGGTCAACCCCTCTAACCTATT-AGCTTTATCA
1 GTTTTGCCTTGGCCAACCCCTCTAATTTGTTGA-CTTTATCA
* * *
1634642 GTTTTGCCTTGGCCAACTCCTCAAATTAGTTGA-TGTTATC-
1 GTTTTGCCTTGGCCAACCCCTCTAATTTGTTGACT-TTATCA
** * ** * ** * *
1634682 GTTTCACCTTAGTTAACCCTTCTAACCTGTTGGCTTTAT-T
1 GTTTTGCCTTGGCCAACCCCTCTAATTTGTTGACTTTATCA
* * * * *
1634722 GATTTTGCCTTGGCCAACTCCTTTAATTGGTTAACTTTATTA
1 G-TTTTGCCTTGGCCAACCCCTCTAATTTGTTGACTTTATCA
* ** * ** * **
1634764 GTTTTGCCTTAGTTAACCCTTCTAACCTATTGGTTTTATCA
1 GTTTTGCCTTGGCCAACCCCTCTAATTTGTTGACTTTATCA
* *
1634805 GTTTTGCCTTGGCCAACCCCACT-ATTTGGTTGACATTAT
1 GTTTTGCCTTGGCCAACCCCTCTAATTT-GTTGACTTTAT
1634844 TGGTTTTATC
Statistics
Matches: 226, Mismatches: 91, Indels: 16
0.68 0.27 0.05
Matches are distributed among these distances:
40 30 0.13
41 194 0.86
42 2 0.01
ACGTcount: A:0.20, C:0.24, G:0.14, T:0.42
Consensus pattern (41 bp):
GTTTTGCCTTGGCCAACCCCTCTAATTTGTTGACTTTATCA
Found at i:1634751 original size:245 final size:241
Alignment explanation
Indices: 1634199--1634904 Score: 676
Period size: 245 Copynumber: 2.9 Consensus size: 241
1634189 ATTAGTTTCT
* * * * *
1634199 CTTAGGTTAACCTCTCTAACCTATTGGCTTTATAGGTTCGCCTTGGCCAACCCTTTTAATTGGTT
1 CTTA-GTTAACCT-TCTAACCTGTTGGCTTTATTGTTTTGCCTTGGCCAACCC-TTTAATTGGTA
* * ** *
1634264 GATTTTATTGGTTTTGACCTGGTTAACCTCTCTAACCTATTGGCTTTATCAGTTTTGCCCTA-GC
63 GACTTTATTAGTTTTG-CCTTATTAACCTTTCTAACCTATTGGCTTTATCAGTTTTGCCC-AGGC
* * *** * * * * *
1634328 CAACCCTCTAATTGGTTGACTTTATCAGTTTCATTTTAGACAACCTCTTTAACTTATTAGCTTTA
126 CAACCCTCTAATTTGTTGACTTTATCAGTTTTACCCTGGTCAACCCCTCTAACCTATTAGCTTTA
* ** * * *
1634393 TC-GATTTTGCCTTAGG-CAACCCCTTTAATTGGTTGATTTCATTGGTTTTAC
191 TCAG-TTTTGCCTT-GGCCAACTCCTCAAATTAGTTGATTTCATTCGTTTCAC
* * * * *
1634444 CCTAGTCAATCCTT-TCAACCTGTTGGTTTTATTTGTTTTGCCTTAGCCAACACCTCTAATTGGT
1 CTTAGTTAA-CCTTCT-AACCTGTTGGCTTTA-TTGTTTTGCCTTGGCCAAC-CCTTTAATTGGT
* * * * * *
1634508 AGACTTTATTAGTTTTGCCTTATTCAACGTTTCAAATCTCTTGCCTTTATCGGTTTTGCCCAGGC
62 AGACTTTATTAGTTTTGCCTTATT-AACCTTTCTAACCTATTGGCTTTATCAGTTTTGCCCAGGC
* *
1634573 CAACTTCTCTAATTTGTTGACTTTATCAGTTTTGCCCTGGTCAACCCCTCTAACCTATTAGCTTT
126 CAAC-CCTCTAATTTGTTGACTTTATCAGTTTTACCCTGGTCAACCCCTCTAACCTATTAGCTTT
1634638 ATCAGTTTTGCCTTGGCCAACTCCTCAAATTAGTTGATGTT-A-TCGTTTCAC
190 ATCAGTTTTGCCTTGGCCAACTCCTCAAATTAGTTGAT-TTCATTCGTTTCAC
1634689 CTTAGTTAACCCTTCTAACCTGTTGGCTTTATTGATTTTGCCTTGGCCAACTCCTTTAATTGGTT
1 CTTAGTTAA-CCTTCTAACCTGTTGGCTTTATTG-TTTTGCCTTGGCCAAC-CCTTTAATTGG-T
* * **
1634754 A-ACTTTATTAGTTTTGCCTTAGTTAACCCTTCTAACCTATTGGTTTTATCAGTTTTGCCTTGGC
62 AGACTTTATTAGTTTTGCCTTA-TTAACCTTTCTAACCTATTGGCTTTATCAGTTTTGCCCAGGC
* * ** * * *
1634818 CAACCCCACT-ATTTGGTTGACATTATTGGTTTTATCCC-GGTCAACCCTTCTAACCTATTGGTT
126 CAA-CCCTCTAATTT-GTTGACTTTATCAGTTTTA-CCCTGGTCAACCCCTCTAACCTATTAGCT
* *
1634881 TTATCAATTTT-ACTTGGCCAACTC
188 TTATCAGTTTTGCCTTGGCCAACTC
1634905 TTTTAGTTGG
Statistics
Matches: 377, Mismatches: 67, Indels: 35
0.79 0.14 0.07
Matches are distributed among these distances:
243 1 0.00
244 43 0.11
245 241 0.64
246 89 0.24
247 3 0.01
ACGTcount: A:0.20, C:0.24, G:0.14, T:0.42
Consensus pattern (241 bp):
CTTAGTTAACCTTCTAACCTGTTGGCTTTATTGTTTTGCCTTGGCCAACCCTTTAATTGGTAGAC
TTTATTAGTTTTGCCTTATTAACCTTTCTAACCTATTGGCTTTATCAGTTTTGCCCAGGCCAACC
CTCTAATTTGTTGACTTTATCAGTTTTACCCTGGTCAACCCCTCTAACCTATTAGCTTTATCAGT
TTTGCCTTGGCCAACTCCTCAAATTAGTTGATTTCATTCGTTTCAC
Found at i:1634769 original size:163 final size:163
Alignment explanation
Indices: 1634167--1635595 Score: 715
Period size: 163 Copynumber: 8.9 Consensus size: 163
1634157 ATGTTACTTC
** * *
1634167 ACCCTTCTAATTGGTTGGTTTTATTAGTTTC-TCTTAGGTTAA-CCTCTCTAACCTATTGGCTTT
1 ACCC-TCTAATTGGTTGACTTTATTCGTTTCACCTTA-GTTAACCCT-TCTAACCTATTGGCTTT
* * * * * * * *
1634230 ATAG-GTTCGCCTTGGCCAAC-CCTTTTAATTGGTTGATTTTATTGGTTTTGACCTGGTTAACCT
63 ATCGATTTTGCCTTGGCCAACTCC-TTTAATTGGTTGACTTTATTAGTTTTGCCCTGGTCAACCC
*
1634293 CTCTAACCTATTGGCTTTATCAGTTTTGCCCTAGCCA
127 CTCTAACCTATTGGCTTTATCAGTTTTGCCTTAGCCA
** ** * *
1634330 ACCCTCTAATTGGTTGACTTTA-TCAGTTTCATTTTAGACAACCTCTT-TAACTTATTAGCTTTA
1 ACCCTCTAATTGGTTGACTTTATTC-GTTTCACCTTAGTTAACC-CTTCTAACCTATTGGCTTTA
* * * * *
1634393 TCGATTTTGCCTTAGG-CAACCCCTTTAATTGGTTGA-TTTCATTGGTTTTACCCTAGTCAA-TC
64 TCGATTTTGCCTT-GGCCAACTCCTTTAATTGGTTGACTTT-ATTAGTTTTGCCCTGGTCAACCC
* * * **
1634455 CTTTCAACCTGTTGGTTTTATTTGTTTTGCCTTAGCCA
127 CTCT-AACCTATTGGCTTTATCAGTTTTGCCTTAGCCA
* * ** ** * * * *
1634493 ACACCTCTAATTGGTAGACTTTATTAGTTTTGCCTTA-TTCAACGTTTCAAATCTCTTGCCTTTA
1 AC-CCTCTAATTGGTTGACTTTATTCGTTTCACCTTAGTT-AACCCTTCTAACCTATTGGCTTTA
* ** * * * *
1634557 TCGGTTTTGCCCAGGCCAACTTCTCTAATTTGTTGACTTTATCAGTTTTGCCCTGGTCAACCCCT
64 TCGATTTTGCCTTGGCCAACTCCTTTAATTGGTTGACTTTATTAGTTTTGCCCTGGTCAACCCCT
* *
1634622 CTAACCTATTAGCTTTATCAGTTTTGCCTTGGCCA
129 CTAACCTATTGGCTTTATCAGTTTTGCCTTAGCCA
* * *
1634657 ACTCCTCAAATTAGTTGA-TGTTA-TCGTTTCACCTTAGTTAACCCTTCTAACCTGTTGGCTTTA
1 AC-CCTCTAATTGGTTGACT-TTATTCGTTTCACCTTAGTTAACCCTTCTAACCTATTGGCTTTA
* * * * * *
1634720 TTGATTTTGCCTTGGCCAACTCCTTTAATTGGTTAACTTTATTAGTTTTGCCTTAGTTAACCCTT
64 TCGATTTTGCCTTGGCCAACTCCTTTAATTGGTTGACTTTATTAGTTTTGCCCTGGTCAACCCCT
* *
1634785 CTAACCTATTGGTTTTATCAGTTTTGCCTTGGCCA
129 CTAACCTATTGGCTTTATCAGTTTTGCCTTAGCCA
* * * * * ** * *
1634820 ACCCCACTATTTGGTTGACATTATTGGTTTTATCC-CGGTCAACCCTTCTAACCTATTGGTTTTA
1 A-CCCTCTAATTGGTTGACTTTATTCGTTTCA-CCTTAGTTAACCCTTCTAACCTATTGGCTTTA
* * * * * * * * *
1634884 TCAATTTT-ACTTGGCCAACTCTTTTAGTTGGTTAACTTTATAATTTTTGCCTTGGTCAACCTCT
64 TCGATTTTGCCTTGGCCAACTCCTTTAATTGGTTGACTTTATTAGTTTTGCCCTGGTCAACCCCT
* * *
1634948 CTAA-CTATTGGCTTTA-CCGATTTTACCCTAGCCA
129 CTAACCTATTGGCTTTATCAG-TTTTGCCTTAGCCA
* * * * * *
1634982 ACCTTTTTAATTGGTTGAC---A---ATATCA-ATT--TT-A-CCTGGTC-AACC-----CCTTT
1 ACC-CTCTAATTGGTTGACTTTATTCGTTTCACCTTAGTTAACCCT--TCTAACCTATTGGCTTT
* * * ** *
1635030 A---ATTTTGCCTTGGCCAACTCCTTTAGTTGGTT-AATGTTATCAGTTTTGCCCTAATTAACCC
63 ATCGATTTTGCCTTGGCCAACTCCTTTAATTGGTTGACT-TTATTAGTTTTGCCCTGGTCAACCC
**
1635091 CTCTAACCT-TGTTACTTTATC-GATTTTGCCCTT-GCCA
127 CTCTAACCTAT-TGGCTTTATCAG-TTTTG-CCTTAGCCA
* * * * * * * * *
1635128 ATGCCTCTCATTGGTTGACATTATTGGTGTT-GCCTTAGTTAATGCC-TCTAACATGTTAGCTTT
1 A-CCCTCTAATTGGTTGACTTTATTCGT-TTCACCTTAGTTAA-CCCTTCTAACCTATTGGCTTT
* * * * * * * * *
1635191 ATCGATTTTTCCCTAGCCAAC-CCTTCTAATTGGTTAACGTTATCAGTTTTACCCTAGTCAACAC
63 ATCGATTTTGCCTTGGCCAACTCCTT-TAATTGGTTGACTTTATTAGTTTTGCCCTGGTCAACCC
* * * *
1635255 TTCTAACCTATTGGCTTTATTAGTTTTGCCCTAGTCA
127 CTCTAACCTATTGGCTTTATCAGTTTTGCCTTAGCCA
* * * * * *** *
1635292 ACTCATTTAATTGTTTAACTTTATTAGTTT----TTCCCT-ACCCTTCTAACCTATTGGGTTTAT
1 AC-CCTCTAATTGGTTGACTTTATTCGTTTCACCTTAGTTAACCCTTCTAACCTATTGGCTTTAT
* * * * * * * * * * *
1635352 -TAGTTTTGTCC-TAGCCAAC-CTCTATGATTAGTTGACGTTATCAGTTTTTCCCTAGTTAATCC
65 CGA-TTTTG-CCTTGGCCAACTC-CTTTAATTGGTTGACTTTATTAGTTTTGCCCTGGTCAACCC
* * * ** *
1635414 CTCTAACCTGTTGTCTTTATTAGTTTTTTCTTGGCCA
127 CTCTAACCTATTGGCTTTATCAGTTTTGCCTTAGCCA
* * * *
1635451 ACCCGT-TAATTGGTTGACATTA-TCGGTTTTACCCTAGTCAA-CCTCTCTAACCTATTGGCTTT
1 ACCC-TCTAATTGGTTGACTTTATTC-GTTTCACCTTAGTTAACCCT-TCTAACCTATTGGCTTT
* * * * * * * * *
1635513 AT-TAGTTTACCTTGGCTAACT-CTATTAATTGATTGA-TGTTA-TCGATTTTGCCATAGTTAAC
63 ATCGATTTTGCCTTGGCCAACTCCT-TTAATTGGTTGACT-TTATTAG-TTTTGCCCTGGTCAAC
*
1635574 TCCTCTAACCTATTGGCTTTAT
125 CCCTCTAACCTATTGGCTTTAT
1635596 TGGTTTCTAT
Statistics
Matches: 959, Mismatches: 228, Indels: 159
0.71 0.17 0.12
Matches are distributed among these distances:
144 7 0.01
145 48 0.05
146 31 0.03
147 9 0.01
149 1 0.00
151 3 0.00
152 6 0.01
153 6 0.01
155 4 0.00
156 7 0.01
157 1 0.00
158 23 0.02
159 93 0.10
160 7 0.01
161 15 0.02
162 136 0.14
163 294 0.31
164 255 0.27
165 13 0.01
ACGTcount: A:0.20, C:0.23, G:0.14, T:0.43
Consensus pattern (163 bp):
ACCCTCTAATTGGTTGACTTTATTCGTTTCACCTTAGTTAACCCTTCTAACCTATTGGCTTTATC
GATTTTGCCTTGGCCAACTCCTTTAATTGGTTGACTTTATTAGTTTTGCCCTGGTCAACCCCTCT
AACCTATTGGCTTTATCAGTTTTGCCTTAGCCA
Found at i:1635033 original size:23 final size:24
Alignment explanation
Indices: 1635007--1635054 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
1634997 TGACAATATC
*
1635007 AATTTTACC-TGGTCAACCCCTTT
1 AATTTTACCTTGGCCAACCCCTTT
* *
1635030 AATTTTGCCTTGGCCAACTCCTTT
1 AATTTTACCTTGGCCAACCCCTTT
1635054 A
1 A
1635055 GTTGGTTAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 8 0.38
24 13 0.62
ACGTcount: A:0.21, C:0.29, G:0.10, T:0.40
Consensus pattern (24 bp):
AATTTTACCTTGGCCAACCCCTTT
Found at i:1635260 original size:82 final size:80
Alignment explanation
Indices: 1635042--1635520 Score: 301
Period size: 82 Copynumber: 5.9 Consensus size: 80
1635032 TTTTGCCTTG
* * * * *
1635042 GCCAACTCCTTTAGTTGGTTAATGTTATCAGTTTTGCCCTAATTAACCCCTCTAACCTTGTTA-C
1 GCCAAC-CCTTTAATTGGTTAACGTTATCAGTTTTACCCTAGTCAA-CCCTCTAACC-TGTTAGC
* * *
1635106 TTTA-TCGATTTTGCCCTT
63 TTTATTAG-TTTTTCCCTA
* * * * * ** * * * * * *
1635124 GCCAATGCCTCTCATTGGTTGACATTATTGGTGTTGCCTTAGTTAATGCCTCTAACATGTTAGCT
1 GCCAA-CCCTTTAATTGGTTAACGTTATCAGTTTTACCCTAGTCAA-CCCTCTAACCTGTTAGCT
*
1635189 TTA-TCGATTTTTCCCTA
64 TTATTAG-TTTTTCCCTA
* * *
1635206 GCCAACCCTTCTAATTGGTTAACGTTATCAGTTTTACCCTAGTCAACACTTCTAACCTATTGGCT
1 GCCAACCCTT-TAATTGGTTAACGTTATCAGTTTTACCCTAGTCAAC-CCTCTAACCTGTTAGCT
*
1635271 TTATTAGTTTTGCCCTA
64 TTATTAGTTTTTCCCTA
* * * * * * * * * *
1635288 GTCAACTCATTTAATTGTTTAACTTTATTAGTTTTTCCCTA--C--CCTTCTAACCTATTGGGTT
1 GCCAAC-CCTTTAATTGGTTAACGTTATCAGTTTTACCCTAGTCAACCCTCTAACCTGTTAGCTT
1635349 TATTAGTTTTGT-CCTA
65 TATTAGTTTT-TCCCTA
* * * * * *
1635365 GCCAACCTCTATGATTAGTTGACGTTATCAGTTTTTCCCTAGTTAATCCCTCTAACCTGTT-GTC
1 GCCAACC-CTTTAATTGGTTAACGTTATCAGTTTTACCCTAGTCAA-CCCTCTAACCTGTTAG-C
* * *
1635429 TTTATTAGTTTTTTCTTG
63 TTTATTAGTTTTTCCCTA
* * * * * *
1635447 GCCAACCCGTTAATTGGTTGACATTATCGGTTTTACCCTAGTCAACCTCTCTAACCTATTGGCTT
1 GCCAACCCTTTAATTGGTTAACGTTATCAGTTTTACCCTAGTCAACC-CTCTAACCTGTTAGCTT
1635512 TATTAGTTT
65 TATTAGTTT
1635521 ACCTTGGCTA
Statistics
Matches: 313, Mismatches: 67, Indels: 35
0.75 0.16 0.08
Matches are distributed among these distances:
76 1 0.00
77 61 0.19
78 1 0.00
80 3 0.01
81 63 0.20
82 179 0.57
83 5 0.02
ACGTcount: A:0.20, C:0.23, G:0.13, T:0.43
Consensus pattern (80 bp):
GCCAACCCTTTAATTGGTTAACGTTATCAGTTTTACCCTAGTCAACCCTCTAACCTGTTAGCTTT
ATTAGTTTTTCCCTA
Found at i:1635280 original size:41 final size:40
Alignment explanation
Indices: 1635230--1635520 Score: 125
Period size: 41 Copynumber: 7.2 Consensus size: 40
1635220 TTGGTTAACG
*
1635230 TTATCAGTTTTACCCTAGTCAACACTTCTAACCTATTGGCT
1 TTATTAGTTTTACCCTAGTCAAC-CTTCTAACCTATTGGCT
* * * **
1635271 TTATTAGTTTTGCCCTAGTCAACTCATT-TAA-TTGTTTAACT
1 TTATTAGTTTTACCCTAGTCAAC-C-TTCTAACCT-ATTGGCT
* *
1635312 TTATTAGTTTTTCCCTA--C--CCTTCTAACCTATTGGGT
1 TTATTAGTTTTACCCTAGTCAACCTTCTAACCTATTGGCT
** * * * *
1635348 TTATTAGTTTTGTCCTAGCCAACC-TCTATGA-TTAGTTGACG
1 TTATTAGTTTTACCCTAGTCAACCTTCTA--ACCTA-TTGGCT
* * * * * *
1635389 TTATCAGTTTTTCCCTAGTTAATCCCTCTAACCTGTTGTCT
1 TTATTAGTTTTACCCTAGTCAA-CCTTCTAACCTATTGGCT
** * * * * * * * *
1635430 TTATTAGTTTTTTCTTGGCCAACCCGT-TAA-TTGGTTGACA
1 TTATTAGTTTTACCCTAGTCAA-CCTTCTAACCT-ATTGGCT
**
1635470 TTATCGGTTTTACCCTAGTCAACCTCTCTAACCTATTGGCT
1 TTATTAGTTTTACCCTAGTCAACCT-TCTAACCTATTGGCT
1635511 TTATTAGTTT
1 TTATTAGTTT
1635521 ACCTTGGCTA
Statistics
Matches: 179, Mismatches: 53, Indels: 36
0.67 0.20 0.13
Matches are distributed among these distances:
35 2 0.01
36 22 0.12
37 2 0.01
38 1 0.01
39 8 0.04
40 29 0.16
41 105 0.59
42 6 0.03
43 4 0.02
ACGTcount: A:0.21, C:0.22, G:0.12, T:0.45
Consensus pattern (40 bp):
TTATTAGTTTTACCCTAGTCAACCTTCTAACCTATTGGCT
Found at i:1635517 original size:81 final size:81
Alignment explanation
Indices: 1635196--1635601 Score: 346
Period size: 81 Copynumber: 5.0 Consensus size: 81
1635186 GCTTTATCGA
* *
1635196 TTTTTCCCTAGCCAACCCTTCTAATTGGTTAACGTTATCAGTTTTACCCTAGTCAACACT-TCTA
1 TTTTGCCCTAGCCAACCCTT-TAATTGGTTGACGTTATCAGTTTTACCCTAGTCAAC-CTCTCTA
1635260 ACCTATTGGCTTTATTAG
64 ACCTATTGGCTTTATTAG
* * * * * * *
1635278 TTTTGCCCTAGTCAACTCATTTAATTGTTTAACTTTATTAGTTTTTCCCTA--C--CCT-TCTAA
1 TTTTGCCCTAGCCAAC-CCTTTAATTGGTTGACGTTATCAGTTTTACCCTAGTCAACCTCTCTAA
*
1635338 CCTATTGGGTTTATTAG
65 CCTATTGGCTTTATTAG
* * * * * *
1635355 TTTTGTCCTAGCCAACCTCTATGATTAGTTGACGTTATCAGTTTTTCCCTAGTTAATCC-CTCTA
1 TTTTGCCCTAGCCAACC-CTTTAATTGGTTGACGTTATCAGTTTTACCCTAGTCAA-CCTCTCTA
* *
1635419 ACCTGTTGTCTTTATTAG
64 ACCTATTGGCTTTATTAG
** * * * * *
1635437 TTTTTTCTTGGCCAACCCGTTAATTGGTTGACATTATCGGTTTTACCCTAGTCAACCTCTCTAAC
1 TTTTGCCCTAGCCAACCCTTTAATTGGTTGACGTTATCAGTTTTACCCTAGTCAACCTCTCTAAC
1635502 CTATTGGCTTTATTAG
66 CTATTGGCTTTATTAG
* * * * * * * * * *
1635518 -TTTACCTTGGCTAACTCTATTAATTGATTGATGTTATC-GATTTTGCCATAGTTAA-CTCCTCT
1 TTTTGCCCTAGCCAACCCT-TTAATTGGTTGACGTTATCAG-TTTTACCCTAGTCAACCT-CTCT
*
1635580 AACCTATTGGCTTTATTGG
63 AACCTATTGGCTTTATTAG
1635599 TTT
1 TTT
1635602 CTATTTGGTT
Statistics
Matches: 264, Mismatches: 47, Indels: 26
0.78 0.14 0.08
Matches are distributed among these distances:
76 1 0.00
77 62 0.23
78 1 0.00
80 19 0.07
81 101 0.38
82 77 0.29
83 3 0.01
ACGTcount: A:0.21, C:0.22, G:0.13, T:0.44
Consensus pattern (81 bp):
TTTTGCCCTAGCCAACCCTTTAATTGGTTGACGTTATCAGTTTTACCCTAGTCAACCTCTCTAAC
CTATTGGCTTTATTAG
Found at i:1638484 original size:19 final size:19
Alignment explanation
Indices: 1638460--1638498 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
1638450 TTTTAAATAG
1638460 ATATATATATAAATAAAAT
1 ATATATATATAAATAAAAT
*
1638479 ATATATATATATATAAAAT
1 ATATATATATAAATAAAAT
1638498 A
1 A
1638499 AAATTTTCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
ATATATATATAAATAAAAT
Found at i:1639113 original size:153 final size:151
Alignment explanation
Indices: 1638956--1639422 Score: 405
Period size: 150 Copynumber: 3.1 Consensus size: 151
1638946 ACTGAGCCAT
* *
1638956 TTTTATGCCAAAGGTATATGTTTAGGATAGGTCCATCCTTTTATAATATTCTCATGTCCTTTAGG
1 TTTTATGCCAAAGGTATATGTTTAGGATAGGTTCATCCTTTTATAATATTTTCATGTCCTTTAGG
* * * * **
1639021 ATTATCGA-GT-TTTTTATGTTGAAGGTATACCCTAAAGGCATTTTTGATAATTTTTTTCGAGTT
66 ATTAT-GAGGTACTTTCATGTTGAAGGTATACCCTAAAGGCA-ATTTGATAATTTTTTTAGA-AC
* *
1639084 GAA-TCCTAGGTAGTCATCGAATCGC
128 CAAGTCCTA-GTAGTCA-CCAATCGC
* * ** * *
1639109 TTTTATGCCAAACGCATATG-TTAGGATACATTCATCCTTTTATAATATTTTCATGTCCCTTAAG
1 TTTTATGCCAAAGGTATATGTTTAGGATAGGTTCATCCTTTTATAATATTTTCATGTCCTTTAGG
* * * * *
1639173 ATTATTAGGTACTTTCATGTTGAAGGTATACCTTAAGGGTAATTTGGTAATTTTTTTAGAACCAA
66 ATTATGAGGTACTTTCATGTTGAAGGTATACCCTAAAGGCAATTTGATAATTTTTTTAGAACCAA
1639238 GTCCTAGTAGTCACCAATCGC
131 GTCCTAGTAGTCACCAATCGC
* * * *
1639259 TTGTATGCCAAAGGTGTCA--TTTAGGATAGGTTCATTC-TTTACTTATCATTTTCATGTCCTTT
1 TTTTATGCCAAAGGTAT-ATGTTTAGGATAGGTTCATCCTTTTA-TAAT-ATTTTCATGTCCTTT
* ** ** * * * * *
1639321 AGG-TTAAT-AGATACTTTCACATCAAATGTAAACCCTAAAGGTATTTTGGTAATTTTTTTAGAA
63 AGGATT-ATGAGGTACTTTCATGTTGAAGGTATACCCTAAAGGCAATTTGATAATTTTTTTAGAA
* * * * *
1639384 TCGAGT-CTAGGTAATCACCAGGTTGC
127 CCAAGTCCTA-GTAGTCACCA-ATCGC
1639410 TTTTATGCCAAAG
1 TTTTATGCCAAAG
1639423 CTGCGTATTT
Statistics
Matches: 257, Mismatches: 47, Indels: 22
0.79 0.14 0.07
Matches are distributed among these distances:
149 7 0.03
150 97 0.38
151 44 0.17
152 66 0.26
153 43 0.17
ACGTcount: A:0.27, C:0.15, G:0.17, T:0.40
Consensus pattern (151 bp):
TTTTATGCCAAAGGTATATGTTTAGGATAGGTTCATCCTTTTATAATATTTTCATGTCCTTTAGG
ATTATGAGGTACTTTCATGTTGAAGGTATACCCTAAAGGCAATTTGATAATTTTTTTAGAACCAA
GTCCTAGTAGTCACCAATCGC
Found at i:1639244 original size:152 final size:151
Alignment explanation
Indices: 1638956--1639270 Score: 359
Period size: 152 Copynumber: 2.1 Consensus size: 151
1638946 ACTGAGCCAT
* * ** * *
1638956 TTTTATGCCAAAGGTATATGTTTAGGATAGGTCCATCCTTTTATAATATTCTCATGTCCTTTAGG
1 TTTTATGCCAAACGCATATGTTTAGGATACATCCATCCTTTTATAATATTCTCATGTCCCTTAAG
* * * * * ***
1639021 ATTATCGAGTTTTTTATGTTGAAGGTATACCCTAAAGGCATTTTTGATAATTTTTTTCGAGTTGA
66 ATTATAGAGTCTTTCATGTTGAAGGTATACCCTAAAGGCATATTTGATAATTTTTTTAGAGACCA
*
1639086 ATCCTAGGTAGTCATCGAATCGC
131 ATCCTA-GTAGTCA-CCAATCGC
* *
1639109 TTTTATGCCAAACGCATATG-TTAGGATACATTCATCCTTTTATAATATTTTCATGTCCCTTAAG
1 TTTTATGCCAAACGCATATGTTTAGGATACATCCATCCTTTTATAATATTCTCATGTCCCTTAAG
* * * *
1639173 ATTATTAG-GTACTTTCATGTTGAAGGTATACCTTAAGGGTA-ATTTGGTAATTTTTTTAGA-AC
66 ATTA-TAGAGT-CTTTCATGTTGAAGGTATACCCTAAAGGCATATTTGATAATTTTTTTAGAGAC
1639235 CAAGTCCTAGTAGTCACCAATCGC
129 CAA-TCCTAGTAGTCACCAATCGC
*
1639259 TTGTATGCCAAA
1 TTTTATGCCAAA
1639271 GGTGTCATTT
Statistics
Matches: 137, Mismatches: 22, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
150 18 0.13
151 9 0.07
152 65 0.47
153 45 0.33
ACGTcount: A:0.27, C:0.16, G:0.17, T:0.40
Consensus pattern (151 bp):
TTTTATGCCAAACGCATATGTTTAGGATACATCCATCCTTTTATAATATTCTCATGTCCCTTAAG
ATTATAGAGTCTTTCATGTTGAAGGTATACCCTAAAGGCATATTTGATAATTTTTTTAGAGACCA
ATCCTAGTAGTCACCAATCGC
Found at i:1646399 original size:59 final size:58
Alignment explanation
Indices: 1646333--1646620 Score: 207
Period size: 59 Copynumber: 5.0 Consensus size: 58
1646323 TTTAAGCTGG
* *
1646333 TTTCATTTGGGCCATTTCTTTGAATCTTGGTTTCGT-TCAAGTTGTCATTAGGTCTTTGC
1 TTTCATTTAGGCC-TTTCTTTGAACCTTGGTTTCGTCT-AAGTTGTCATTAGGTCTTTGC
* * *
1646392 TTTCATTTAGGCTCTTTTTTTGAACCTTGGTTTTGTCTAAGTTGTCTTTAGGTCTTTGC
1 TTTCATTTAGGC-CTTTCTTTGAACCTTGGTTTCGTCTAAGTTGTCATTAGGTCTTTGC
* ** * * * * *
1646451 TTTCACTTAAACCATTTCTTTGGACCATGGTTTTG-CTCAAGTAGTCTTTAGG-C--T-C
1 TTTCATTTAGGCC-TTTCTTTGAACCTTGGTTTCGTCT-AAGTTGTCATTAGGTCTTTGC
* * * * *
1646506 ATTTTATTT-GGGCTTT-TTTTAATCTTGGTTTCATCTAAGTTGTCATTAGGTCTTT-C
1 -TTTCATTTAGGCCTTTCTTTGAACCTTGGTTTCGTCTAAGTTGTCATTAGGTCTTTGC
*** ** * * *
1646562 GTTTCACCAAGGCCATTTCTTCAAACCTTGGTTTTGTCTAGGTTGTCTTTAGGTCTTTG
1 -TTTCATTTAGGCC-TTTCTTTGAACCTTGGTTTCGTCTAAGTTGTCATTAGGTCTTTG
1646621 GTTTTGCCTA
Statistics
Matches: 178, Mismatches: 38, Indels: 25
0.74 0.16 0.10
Matches are distributed among these distances:
53 23 0.13
54 6 0.03
55 2 0.01
56 13 0.07
57 3 0.02
58 7 0.04
59 122 0.69
60 2 0.01
ACGTcount: A:0.15, C:0.17, G:0.18, T:0.49
Consensus pattern (58 bp):
TTTCATTTAGGCCTTTCTTTGAACCTTGGTTTCGTCTAAGTTGTCATTAGGTCTTTGC
Found at i:1646594 original size:112 final size:113
Alignment explanation
Indices: 1646405--1646614 Score: 257
Period size: 112 Copynumber: 1.9 Consensus size: 113
1646395 CATTTAGGCT
** * *
1646405 CTTTTTTTGAACCTTGGTTTTGTCTAAGTTGTCTTTAGGTCTTTGCTTTCACTTAAACCATTTCT
1 CTTTTTTTGAACCTTGGTTTCATCTAAGTTGTCATTAGGTCTTTGCTTTCACTCAAACCATTTCT
***
1646470 TTGGACCATGGTTTTG-CTCAAGTAGTCTTTAGGCTCATTTTATTTGGG
66 TCAAACCATGGTTTTGTCT-AAGTAGTCTTTAGGCTCATTTTATTTGGG
* *
1646518 CTTTTTTT-AATCTTGGTTTCATCTAAGTTGTCATTAGGTCTTT-CGTTTCAC-CAAGGCCATTT
1 CTTTTTTTGAACCTTGGTTTCATCTAAGTTGTCATTAGGTCTTTGC-TTTCACTCAA-ACCATTT
* * *
1646580 CTTCAAACCTTGGTTTTGTCTAGGTTGTCTTTAGG
64 CTTCAAACCATGGTTTTGTCTAAGTAGTCTTTAGG
1646615 TCTTTGGTTT
Statistics
Matches: 82, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
111 3 0.04
112 69 0.84
113 10 0.12
ACGTcount: A:0.16, C:0.18, G:0.18, T:0.48
Consensus pattern (113 bp):
CTTTTTTTGAACCTTGGTTTCATCTAAGTTGTCATTAGGTCTTTGCTTTCACTCAAACCATTTCT
TCAAACCATGGTTTTGTCTAAGTAGTCTTTAGGCTCATTTTATTTGGG
Found at i:1646636 original size:59 final size:58
Alignment explanation
Indices: 1646529--1646771 Score: 190
Period size: 59 Copynumber: 4.2 Consensus size: 58
1646519 TTTTTTTAAT
* * * **
1646529 CTTGGTTTCATCTAAGTTGTCATTAGGTCTTTCGTTTCACCAAGGCCATTTCTTCAAAC
1 CTTGGTTTCATCTAGGTTGTCTTTAGGTCTTTGGTTTTGCCAA-GCCATTTCTTCAAAC
** *
1646588 CTTGGTTTTGTCTAGGTTGTCTTTAGGTCTTTGGTTTTGCCTAAGCCATTTCTT-AAAA
1 CTTGGTTTCATCTAGGTTGTCTTTAGGTCTTTGGTTTTGCC-AAGCCATTTCTTCAAAC
* * * * * * * *
1646646 C-AGGTTTCATCTAGGTAGTAC-CTAGGTCTTTGATTTTGTCTAGACC-GTTCCTCTAAAC
1 CTTGGTTTCATCTAGGTTGT-CTTTAGGTCTTTGGTTTTGCCAAG-CCATTTCTTC-AAAC
* * * * **
1646704 CTTGGTTTCATCTAGGTTATTTTTAGGTTTTTGGTTTTATCCAAGCCATTTGGT-AGAAC
1 CTTGGTTTCATCTAGGTTGTCTTTAGGTCTTTGGTTTT-GCCAAGCCATTTCTTCA-AAC
1646763 CTTGGTTTC
1 CTTGGTTTC
1646772 GTCCAAGTCT
Statistics
Matches: 142, Mismatches: 32, Indels: 20
0.73 0.16 0.10
Matches are distributed among these distances:
56 6 0.04
57 32 0.23
58 10 0.07
59 86 0.61
60 8 0.06
ACGTcount: A:0.18, C:0.19, G:0.19, T:0.44
Consensus pattern (58 bp):
CTTGGTTTCATCTAGGTTGTCTTTAGGTCTTTGGTTTTGCCAAGCCATTTCTTCAAAC
Found at i:1651399 original size:33 final size:33
Alignment explanation
Indices: 1651357--1651419 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
1651347 TTTGTGACAA
1651357 TGTATCGATACAAT-T-CTTCATGTATCGATATAT
1 TGTATCGATACAATGTGC--CATGTATCGATATAT
1651390 TGTATCGATACAATGTGCCATGTATCGATA
1 TGTATCGATACAATGTGCCATGTATCGATA
1651420 CAAATAGTGG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
33 26 0.93
34 1 0.04
35 1 0.04
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38
Consensus pattern (33 bp):
TGTATCGATACAATGTGCCATGTATCGATATAT
Found at i:1660143 original size:33 final size:32
Alignment explanation
Indices: 1660084--1660153 Score: 90
Period size: 33 Copynumber: 2.1 Consensus size: 32
1660074 GTCGTTTGTG
1660084 ACAATGTATCGATACAATTCTTCATGTAT-TAAT
1 ACAATGTATCGATACAATTC-TCATGTATCT-AT
1660117 ACAATGTATCGATACAATGTGC-CATGTATCTAT
1 ACAATGTATCGATACAAT-T-CTCATGTATCTAT
1660150 ACAA
1 ACAA
1660154 ATAGTGGTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
33 31 0.91
34 2 0.06
35 1 0.03
ACGTcount: A:0.37, C:0.17, G:0.11, T:0.34
Consensus pattern (32 bp):
ACAATGTATCGATACAATTCTCATGTATCTAT
Found at i:1660226 original size:19 final size:21
Alignment explanation
Indices: 1660202--1660254 Score: 76
Period size: 19 Copynumber: 2.7 Consensus size: 21
1660192 TCCATTTGTT
*
1660202 CATGTATCGATACAATG-A-A
1 CATGTATCGATACAAAGCATA
1660221 CATGTATCGATACAAAGCATA
1 CATGTATCGATACAAAGCATA
1660242 -ATGTATCGATACA
1 CATGTATCGATACA
1660255 TCTGAAAGTG
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
19 16 0.52
20 14 0.45
21 1 0.03
ACGTcount: A:0.42, C:0.17, G:0.15, T:0.26
Consensus pattern (21 bp):
CATGTATCGATACAAAGCATA
Found at i:1661729 original size:97 final size:96
Alignment explanation
Indices: 1661575--1661776 Score: 273
Period size: 97 Copynumber: 2.1 Consensus size: 96
1661565 AACGAGATTT
* * *
1661575 GAGTATCCCCTCGAAAGAATAGGATTGGAGTGTCCTCAAGAATGATAACTTAGGCAAAAATAAGA
1 GAGTATCCCCTCGAAAGAATAGGATTGGAGTATCCTCAAGAATGACAACTTAAGCAAAAATAAGA
1661640 TTTAAATCATGACAAGTTTAAAAACAGGGCTG
66 TTTAAATCATGACAAGTTT-AAAACAGGGCTG
* * * *
1661672 GAGTATCCCCTC-AGAAGAATGGGGTTGGAGTATCCTCGATG-ATGACAATTTAAGCAAAAATAA
1 GAGTATCCCCTCGA-AAGAATAGGATTGGAGTATCCTC-AAGAATGACAACTTAAGCAAAAATAA
* * *
1661735 GATTTAAATCTTGACAAGTTTAAAACGGGGTTG
64 GATTTAAATCATGACAAGTTTAAAACAGGGCTG
1661768 GAGTATCCC
1 GAGTATCCC
1661777 TGATAAATAA
Statistics
Matches: 93, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
96 20 0.22
97 71 0.76
98 2 0.02
ACGTcount: A:0.37, C:0.15, G:0.23, T:0.25
Consensus pattern (96 bp):
GAGTATCCCCTCGAAAGAATAGGATTGGAGTATCCTCAAGAATGACAACTTAAGCAAAAATAAGA
TTTAAATCATGACAAGTTTAAAACAGGGCTG
Found at i:1664224 original size:33 final size:32
Alignment explanation
Indices: 1664163--1664232 Score: 88
Period size: 33 Copynumber: 2.1 Consensus size: 32
1664153 GCCCTTTGTG
*
1664163 ACAATGTATCGATACAATTCTTCGTGTATCCAT
1 ACAATGTATCGATACAATTC-TCATGTATCCAT
*
1664196 ACAATGTATCGATACAATGTGC-CATGTATCTAT
1 ACAATGTATCGATACAAT-T-CTCATGTATCCAT
1664229 ACAA
1 ACAA
1664233 ATAGTGGTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
33 31 0.94
34 1 0.03
35 1 0.03
ACGTcount: A:0.34, C:0.20, G:0.13, T:0.33
Consensus pattern (32 bp):
ACAATGTATCGATACAATTCTCATGTATCCAT
Found at i:1664305 original size:19 final size:21
Alignment explanation
Indices: 1664281--1664333 Score: 76
Period size: 19 Copynumber: 2.7 Consensus size: 21
1664271 TCCATTTGTT
*
1664281 CATGTATCGATACAATG-A-A
1 CATGTATCGATACAAAGCATA
1664300 CATGTATCGATACAAAGCATA
1 CATGTATCGATACAAAGCATA
1664321 -ATGTATCGATACA
1 CATGTATCGATACA
1664334 TCTGAAAGTG
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
19 16 0.52
20 14 0.45
21 1 0.03
ACGTcount: A:0.42, C:0.17, G:0.15, T:0.26
Consensus pattern (21 bp):
CATGTATCGATACAAAGCATA
Found at i:1668285 original size:51 final size:51
Alignment explanation
Indices: 1668193--1668300 Score: 128
Period size: 51 Copynumber: 2.1 Consensus size: 51
1668183 GTATCAAAGC
* * * *
1668193 ACATTTGGGTCAAAACCCAGAATGTATCGATACAATGAAAAATGTATCAAT
1 ACATTTGGATCAAAACCCAGAATGTATCAATACAATAAAAAATATATCAAT
* * **
1668244 ACATTTGGATC-AAACCTATAATGTATCAATACAATAAAAAAATATATTGAT
1 ACATTTGGATCAAAACCCAGAATGTATCAATACAAT-AAAAAATATATCAAT
1668295 ACATTT
1 ACATTT
1668301 TCTTTTTAAA
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
50 21 0.44
51 27 0.56
ACGTcount: A:0.45, C:0.14, G:0.11, T:0.30
Consensus pattern (51 bp):
ACATTTGGATCAAAACCCAGAATGTATCAATACAATAAAAAATATATCAAT
Found at i:1668361 original size:21 final size:21
Alignment explanation
Indices: 1668337--1668391 Score: 67
Period size: 20 Copynumber: 2.7 Consensus size: 21
1668327 AACATGGTCT
1668337 TGTATCGATACATTTCAAACA
1 TGTATCGATACATTTCAAACA
* ***
1668358 TGTATCGATAGA-TTCACTTA
1 TGTATCGATACATTTCAAACA
1668378 TGTATCGATACATT
1 TGTATCGATACATT
1668392 CACTTGTTGT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
20 16 0.57
21 12 0.43
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.38
Consensus pattern (21 bp):
TGTATCGATACATTTCAAACA
Found at i:1668380 original size:20 final size:21
Alignment explanation
Indices: 1668357--1668406 Score: 75
Period size: 20 Copynumber: 2.4 Consensus size: 21
1668347 CATTTCAAAC
*
1668357 ATGTATCGATAGATTCACTT-
1 ATGTATCGATACATTCACTTG
1668377 ATGTATCGATACATTCACTTG
1 ATGTATCGATACATTCACTTG
*
1668398 TTGTATCGA
1 ATGTATCGA
1668407 CTCAAATTGT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 19 0.70
21 8 0.30
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.40
Consensus pattern (21 bp):
ATGTATCGATACATTCACTTG
Found at i:1672997 original size:33 final size:32
Alignment explanation
Indices: 1672955--1673018 Score: 92
Period size: 33 Copynumber: 2.0 Consensus size: 32
1672945 GACACCCAGA
1672955 TGTATCGATACATATTGCTTAGTATCAATACAT
1 TGTATCGATACATATT-CTTAGTATCAATACAT
* * *
1672988 TGTATCGATACATGTTCTTTGTATCGATACA
1 TGTATCGATACATATTCTTAGTATCAATACA
1673019 CTATAAAATG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 13 0.46
33 15 0.54
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.41
Consensus pattern (32 bp):
TGTATCGATACATATTCTTAGTATCAATACAT
Found at i:1673599 original size:36 final size:35
Alignment explanation
Indices: 1673552--1673620 Score: 88
Period size: 35 Copynumber: 1.9 Consensus size: 35
1673542 AGTGATTGAG
1673552 AGGTTCTATCTTTA-CCT-TTGAAAAAGATAAGGAGAA
1 AGGTTCTATC-TTAGCCTGTT--AAAAGATAAGGAGAA
*
1673588 AGGTTTTATCTTAGCCTGTTAAAAGATAAGGAG
1 AGGTTCTATCTTAGCCTGTTAAAAGATAAGGAG
1673621 GTTCTATCTT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
35 16 0.53
36 12 0.40
37 2 0.07
ACGTcount: A:0.36, C:0.10, G:0.22, T:0.32
Consensus pattern (35 bp):
AGGTTCTATCTTAGCCTGTTAAAAGATAAGGAGAA
Found at i:1673644 original size:30 final size:31
Alignment explanation
Indices: 1673549--1673645 Score: 90
Period size: 31 Copynumber: 2.9 Consensus size: 31
1673539 CAAAGTGATT
*
1673549 GAGAGGTTCTATCTTTACCTTTGAAAAAGATAAG
1 GAGAGGTTCTATC-TTAGCTTT--AAAAGATAAG
*
1673583 GAGAAAGGTTTTATCTTAGCCTGTTAAAAGATAA-
1 GAG--AGGTTCTATCTTAG-CT-TTAAAAGATAAG
1673617 G-GAGGTTCTATCTTAGCTTTCAAAAGATA
1 GAGAGGTTCTATCTTAGCTTT-AAAAGATA
1673646 GCATTGTAAG
Statistics
Matches: 55, Mismatches: 3, Indels: 14
0.76 0.04 0.19
Matches are distributed among these distances:
29 2 0.04
30 10 0.18
31 13 0.24
33 1 0.02
34 4 0.07
35 12 0.22
36 11 0.20
37 2 0.04
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.33
Consensus pattern (31 bp):
GAGAGGTTCTATCTTAGCTTTAAAAGATAAG
Found at i:1674404 original size:47 final size:49
Alignment explanation
Indices: 1674320--1674419 Score: 118
Period size: 47 Copynumber: 2.1 Consensus size: 49
1674310 AATATTCCAA
* **
1674320 GTATGGACTTCTAACTCCAAATGTCTCAAAC-TTAAAAAG-AACTCTAG
1 GTATGGACTCCTAACTCCAAATGTCTCAAACAAAAAAAAGAAACTCTAG
1674367 GTATGGACTCCTAACTCCATAA-GTC-CTAAACAAAAAAAAGAAAACTCTAG
1 GTATGGACTCCTAACTCCA-AATGTCTC-AAACAAAAAAAAG-AAACTCTAG
1674417 GTA
1 GTA
1674420 CAAGCTCTTG
Statistics
Matches: 45, Mismatches: 3, Indels: 7
0.82 0.05 0.13
Matches are distributed among these distances:
46 1 0.02
47 25 0.56
48 8 0.18
50 11 0.24
ACGTcount: A:0.42, C:0.21, G:0.13, T:0.24
Consensus pattern (49 bp):
GTATGGACTCCTAACTCCAAATGTCTCAAACAAAAAAAAGAAACTCTAG
Found at i:1674634 original size:51 final size:51
Alignment explanation
Indices: 1674534--1674895 Score: 243
Period size: 52 Copynumber: 7.1 Consensus size: 51
1674524 AAATTATCTA
* * ** **
1674534 AATC-AAGTCCATATTAGCTAGCA-CTAGTAT-ATGATATCAAACCCTATAG
1 AATCTAAGTCCACATTAGCTAGCACCTA-TATAAAGAGGTCAAGTCCTATAG
* * ** * * *
1674583 AACCTTAGTTTACATTAACTAGCACCTCTATAAAGAAGTCAAGTCCTATAG
1 AATCTAAGTCCACATTAGCTAGCACCTATATAAAGAGGTCAAGTCCTATAG
* * * *
1674634 AATCTAAGTTCACAAATATCTAGCACCTATATAGAGAGGTCAAGTCCTAT-G
1 AATCTAAGTCCAC-ATTAGCTAGCACCTATATAAAGAGGTCAAGTCCTATAG
** ** *
1674685 AATCTAAGTCCACATTAGCTAGCACCT-TATAGGGAGGTCAAACCCTATAA
1 AATCTAAGTCCACATTAGCTAGCACCTATATAAAGAGGTCAAGTCCTATAG
* * *
1674735 AATCTAAGTCTACATTAGCTAGAACCTATATAAAGAGGTCAAGTACTATAG
1 AATCTAAGTCCACATTAGCTAGCACCTATATAAAGAGGTCAAGTCCTATAG
* * * * * * * ** *
1674786 AACCCAGAGTCCATACT-GGTTGACACCTGTATAGGGAGATCAAG-CCTTATAG
1 AATCTA-AGTCCACATTAGCTAG-CACCTATATAAAGAGGTCAAGTCC-TATAG
* * * * * * *
1674838 AACCTAAAGTCCACATTAGCTGGCACCTATGTAAGGTGGTTAAGCCCTATAG
1 AATCT-AAGTCCACATTAGCTAGCACCTATATAAAGAGGTCAAGTCCTATAG
1674890 AATCTA
1 AATCTA
1674896 TTAGATAGTA
Statistics
Matches: 241, Mismatches: 60, Indels: 22
0.75 0.19 0.07
Matches are distributed among these distances:
49 21 0.09
50 54 0.22
51 65 0.27
52 95 0.39
53 6 0.02
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.27
Consensus pattern (51 bp):
AATCTAAGTCCACATTAGCTAGCACCTATATAAAGAGGTCAAGTCCTATAG
Found at i:1674778 original size:100 final size:102
Alignment explanation
Indices: 1674594--1674783 Score: 242
Period size: 100 Copynumber: 1.9 Consensus size: 102
1674584 ACCTTAGTTT
** * * *
1674594 ACATTAACTAGCACCTCTATAAAGAAGTCAAGTCCTATAGAATCTAAGTTCACAAATATCTAGCA
1 ACATTAACTAGCACCTCTATAAAGAAGTCAAACCCTATAAAATCTAAGTTCACAAATAGCTAGAA
* *
1674659 CCTATATAGAGAGGTCAAGTCCTATGAATCTAAGTCC
66 CCTATATAAAGAGGTCAAGTACTATGAATCTAAGTCC
* ** * *
1674696 ACATTAGCTAGCACCT-TATAGGGAGGTCAAACCCTATAAAATCTAAG-TCTAC-ATTAGCTAGA
1 ACATTAACTAGCACCTCTATAAAGAAGTCAAACCCTATAAAATCTAAGTTC-ACAAATAGCTAGA
1674758 ACCTATATAAAGAGGTCAAGTACTAT
65 ACCTATATAAAGAGGTCAAGTACTAT
1674784 AGAACCCAGA
Statistics
Matches: 75, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
100 33 0.44
101 27 0.36
102 15 0.20
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (102 bp):
ACATTAACTAGCACCTCTATAAAGAAGTCAAACCCTATAAAATCTAAGTTCACAAATAGCTAGAA
CCTATATAAAGAGGTCAAGTACTATGAATCTAAGTCC
Found at i:1675134 original size:51 final size:50
Alignment explanation
Indices: 1675079--1675236 Score: 140
Period size: 51 Copynumber: 3.1 Consensus size: 50
1675069 CAGTCAAGAG
*
1675079 CTATAGAGTCAAAGTCCACACTAGCTAGCACTTATATAGAAAGGTCAGGCC
1 CTATAGAGTCAAAGTCCACACTAGCTGGCAC-TATATAGAAAGGTCAGGCC
* * * * * * *
1675130 CTATAAAGTCCAGGTCCATATTAGCTGGCACTAGCATTA-AAAGGT-AGAACC
1 CTATAGAGTCAAAGTCCACACTAGCTGGCACTA-TA-TAGAAAGGTCAG-GCC
* * * * *
1675181 CTATCGAGTCAAAATCCACACTAGCTGGCACCAATATAGAGAGGTCAAGCC
1 CTATAGAGTCAAAGTCCACACTAGCTGGCA-CTATATAGAAAGGTCAGGCC
1675232 CTATA
1 CTATA
1675237 AAGCCCAAGC
Statistics
Matches: 80, Mismatches: 21, Indels: 12
0.71 0.19 0.11
Matches are distributed among these distances:
50 6 0.08
51 69 0.86
52 5 0.06
ACGTcount: A:0.35, C:0.24, G:0.19, T:0.22
Consensus pattern (50 bp):
CTATAGAGTCAAAGTCCACACTAGCTGGCACTATATAGAAAGGTCAGGCC
Found at i:1681633 original size:28 final size:28
Alignment explanation
Indices: 1681602--1681656 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
1681592 TTCTCTTCTT
* *
1681602 TTGATATTACTTGCTGATTTCATTTCCC
1 TTGATATTACTTGCTGATCTCACTTCCC
* *
1681630 TTGATATTTCTTGTTGATCTCACTTCC
1 TTGATATTACTTGCTGATCTCACTTCC
1681657 ATAATATTTC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.16, C:0.22, G:0.11, T:0.51
Consensus pattern (28 bp):
TTGATATTACTTGCTGATCTCACTTCCC
Found at i:1692060 original size:13 final size:13
Alignment explanation
Indices: 1692042--1692067 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1692032 TACACAAAGT
1692042 ATGTATCGATACA
1 ATGTATCGATACA
1692055 ATGTATCGATACA
1 ATGTATCGATACA
1692068 CAAAAGATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1692065 original size:32 final size:33
Alignment explanation
Indices: 1692024--1692087 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
1692014 TAGCCAAACT
1692024 TGTATCGATACAC-AAAG-TATGTATCGATACAA
1 TGTATCGATACACAAAAGAT-TGTATCGATACAA
1692056 TGTATCGATACACAAAAGATTGTATCGATACA
1 TGTATCGATACACAAAAGATTGTATCGATACA
1692088 TTGGCTTGTA
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
32 13 0.43
33 16 0.53
34 1 0.03
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAGATTGTATCGATACAA
Found at i:1698437 original size:20 final size:20
Alignment explanation
Indices: 1698394--1698439 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
1698384 AAATCTTTTG
1698394 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
1698415 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
1698435 CAAAA
1 CAAAA
1698440 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:1700861 original size:13 final size:13
Alignment explanation
Indices: 1700843--1700868 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1700833 TACACAAAGT
1700843 ATGTATCGATACA
1 ATGTATCGATACA
1700856 ATGTATCGATACA
1 ATGTATCGATACA
1700869 CAAAAGATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1700868 original size:32 final size:33
Alignment explanation
Indices: 1700825--1700888 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
1700815 TAGCCAAACT
1700825 TGTATCAATACAC-AAAG-TATGTATCGATACAA
1 TGTATCAATACACAAAAGAT-TGTATCGATACAA
*
1700857 TGTATCGATACACAAAAGATTGTATCGATACA
1 TGTATCAATACACAAAAGATTGTATCGATACA
1700889 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 12 0.41
33 16 0.55
34 1 0.03
ACGTcount: A:0.42, C:0.16, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCAATACACAAAAGATTGTATCGATACAA
Found at i:1710362 original size:3 final size:3
Alignment explanation
Indices: 1710354--1710378 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
1710344 CCATTCCAAG
1710354 TGA TGA TGA TGA TGA TGA TGA TGA T
1 TGA TGA TGA TGA TGA TGA TGA TGA T
1710379 AAGGTTAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.36
Consensus pattern (3 bp):
TGA
Found at i:1711919 original size:20 final size:20
Alignment explanation
Indices: 1711894--1711943 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
1711884 GGGCATAATG
*
1711894 TATCGATACAAT-TCTTCATA
1 TATCGATACAATGTC-CCATA
*
1711914 TATCGATACAATGTCCCATG
1 TATCGATACAATGTCCCATA
1711934 TATCGATACA
1 TATCGATACA
1711944 TTTCACTTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
20 25 0.93
21 2 0.07
ACGTcount: A:0.34, C:0.22, G:0.10, T:0.34
Consensus pattern (20 bp):
TATCGATACAATGTCCCATA
Found at i:1714515 original size:13 final size:13
Alignment explanation
Indices: 1714483--1714522 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
1714473 ATATTAACTC
1714483 ATGTATCGATACA
1 ATGTATCGATACA
* * *
1714496 TTATATCAATACA
1 ATGTATCGATACA
1714509 ATGTATCGATACA
1 ATGTATCGATACA
1714522 A
1 A
1714523 AGAACATTGT
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.42, C:0.15, G:0.10, T:0.33
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1720508 original size:85 final size:85
Alignment explanation
Indices: 1720365--1720536 Score: 344
Period size: 85 Copynumber: 2.0 Consensus size: 85
1720355 ACCTATAAAC
1720365 ATTGTCACGACTTCTAGAGTTCTACAACTAGTTCACATGGATCTTTTTGGTCCAACTAGAACACA
1 ATTGTCACGACTTCTAGAGTTCTACAACTAGTTCACATGGATCTTTTTGGTCCAACTAGAACACA
1720430 AAGTCTAGGAGGAAAAAGAT
66 AAGTCTAGGAGGAAAAAGAT
1720450 ATTGTCACGACTTCTAGAGTTCTACAACTAGTTCACATGGATCTTTTTGGTCCAACTAGAACACA
1 ATTGTCACGACTTCTAGAGTTCTACAACTAGTTCACATGGATCTTTTTGGTCCAACTAGAACACA
1720515 AAGTCTAGGAGGAAAAAGAT
66 AAGTCTAGGAGGAAAAAGAT
1720535 AT
1 AT
1720537 GGTTTTGTCA
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 87 1.00
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (85 bp):
ATTGTCACGACTTCTAGAGTTCTACAACTAGTTCACATGGATCTTTTTGGTCCAACTAGAACACA
AAGTCTAGGAGGAAAAAGAT
Found at i:1723379 original size:13 final size:13
Alignment explanation
Indices: 1723361--1723397 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
1723351 ACATTTTTCT
1723361 TTGTATCGATACA
1 TTGTATCGATACA
1723374 TTGTATCGATACA
1 TTGTATCGATACA
*
1723387 CTGTATCGATA
1 TTGTATCGATA
1723398 TAGGGGGATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1723563 original size:20 final size:20
Alignment explanation
Indices: 1723520--1723566 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 20
1723510 AAATCTTTTG
1723520 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
1723541 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
1723561 CAAAAT
1 CAAAAT
1723567 CAGCCTCAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 6 0.26
21 9 0.39
22 8 0.35
ACGTcount: A:0.32, C:0.19, G:0.04, T:0.45
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:1725983 original size:13 final size:13
Alignment explanation
Indices: 1725965--1725990 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1725955 TACACCAAGT
1725965 ATGTATCGATACA
1 ATGTATCGATACA
1725978 ATGTATCGATACA
1 ATGTATCGATACA
1725991 CCAAAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1726009 original size:34 final size:32
Alignment explanation
Indices: 1725947--1726011 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 32
1725937 TAGCCAAACT
**
1725947 TGTATCGATACACCAAGTATGTATCGATACAA
1 TGTATCGATACACCAAAAATGTATCGATACAA
1725979 TGTATCGATACACCAAAAAATTGTATCGATACA
1 TGTATCGATACACC-AAAAA-TGTATCGATACA
1726012 TTGGCTTGCA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 14 0.48
33 3 0.10
34 12 0.41
ACGTcount: A:0.40, C:0.18, G:0.14, T:0.28
Consensus pattern (32 bp):
TGTATCGATACACCAAAAATGTATCGATACAA
Found at i:1730742 original size:20 final size:20
Alignment explanation
Indices: 1730717--1730769 Score: 81
Period size: 20 Copynumber: 2.6 Consensus size: 20
1730707 ATTGGGCATA
1730717 ATGTATCGATACAAT-TCCTC
1 ATGTATCGATACAATGTCC-C
1730737 ATGTATCGATACAATGTCCC
1 ATGTATCGATACAATGTCCC
*
1730757 ATGTATCAATACA
1 ATGTATCGATACA
1730770 TTTCACTTAG
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 28 0.90
21 3 0.10
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (20 bp):
ATGTATCGATACAATGTCCC
Found at i:1730843 original size:19 final size:19
Alignment explanation
Indices: 1730798--1730853 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
1730788 CTGCCAATTT
*
1730798 CATGTATCGATACAATTAAG
1 CATGTATCGATACAA-TGAG
* *
1730818 TATGTATCGATATAATGAG
1 CATGTATCGATACAATGAG
1730837 CATGTATCGATACAATG
1 CATGTATCGATACAATG
1730854 TATCAATACA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
19 18 0.58
20 13 0.42
ACGTcount: A:0.38, C:0.12, G:0.18, T:0.32
Consensus pattern (19 bp):
CATGTATCGATACAATGAG
Found at i:1738010 original size:48 final size:49
Alignment explanation
Indices: 1737886--1738013 Score: 168
Period size: 49 Copynumber: 2.6 Consensus size: 49
1737876 TAGGAATGTT
* * *
1737886 AAAGATGCCAATATGCTGATTCAAGGCCAACGATATCGGACTTAAAGATG
1 AAAG-TGCCAATATGCTGATTCAAGGCCAGCGACATCGGACTTAAAGATC
* * *
1737936 AAAGTGCCAATATGCTGATTCAAGGCCAGTGACATTGGTCTTAAAGA-C
1 AAAGTGCCAATATGCTGATTCAAGGCCAGCGACATCGGACTTAAAGATC
* *
1737984 AAGGTGCCAATATGTTGATTCAAGGCCAGC
1 AAAGTGCCAATATGCTGATTCAAGGCCAGC
1738014 AATATTGGGC
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
48 27 0.39
49 38 0.55
50 4 0.06
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.23
Consensus pattern (49 bp):
AAAGTGCCAATATGCTGATTCAAGGCCAGCGACATCGGACTTAAAGATC
Found at i:1738021 original size:48 final size:49
Alignment explanation
Indices: 1737886--1738029 Score: 182
Period size: 48 Copynumber: 2.9 Consensus size: 49
1737876 TAGGAATGTT
* * *
1737886 AAAGATGCCAATATGCTGATTCAAGGCCAACGATATCGGACTTAAAGATG
1 AAAG-TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATC
* * *
1737936 AAAGTGCCAATATGCTGATTCAAGGCCAGTGACATTGGTCTTAAAGA-C
1 AAAGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATC
* * * *
1737984 AAGGTGCCAATATGTTGATTCAAGGCCAGCAATATTGGGCTTAAAG
1 AAAGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG
1738030 GTGCCACGGA
Statistics
Matches: 82, Mismatches: 12, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
48 40 0.49
49 38 0.46
50 4 0.05
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.24
Consensus pattern (49 bp):
AAAGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATC
Found at i:1738069 original size:34 final size:33
Alignment explanation
Indices: 1738029--1738196 Score: 144
Period size: 34 Copynumber: 5.0 Consensus size: 33
1738019 TGGGCTTAAA
*
1738029 GGTGCCACGGAGTTGTGGACTTATAGGAAAAAG
1 GGTGCCACGGAGTTGTGGACTTAAAGGAAAAAG
* * *
1738062 GGATGCCACGGAGGTGTGGGCTTAAAAGGGAAAAG
1 GG-TGCCACGGAGTTGTGGACTT-AAAGGAAAAAG
* *
1738097 GGTGCCACGGAGTCGTGGACTTAAA--AAGAAAA
1 GGTGCCACGGAGTTGTGGACTTAAAGGAA-AAAG
* * *
1738129 GGTGCCACAGAGTTGTGGGCTTTAAAAAGAAAAA-
1 GGTGCCACGGAGTTGTGGAC-TT-AAAGGAAAAAG
* * * *
1738163 GGTGTCATGAAGTTGTGGACGTAAAAGGAAAAAG
1 GGTGCCACGGAGTTGTGGAC-TTAAAGGAAAAAG
1738197 ATGTCACGAA
Statistics
Matches: 107, Mismatches: 20, Indels: 15
0.75 0.14 0.11
Matches are distributed among these distances:
31 1 0.01
32 20 0.19
33 16 0.15
34 54 0.50
35 14 0.13
36 2 0.02
ACGTcount: A:0.35, C:0.11, G:0.35, T:0.18
Consensus pattern (33 bp):
GGTGCCACGGAGTTGTGGACTTAAAGGAAAAAG
Found at i:1738157 original size:68 final size:68
Alignment explanation
Indices: 1738029--1738164 Score: 170
Period size: 68 Copynumber: 2.0 Consensus size: 68
1738019 TGGGCTTAAA
* * * *
1738029 GGTGCCACGGAGTTGTGGACTTATAGGAAAAAGGGATGCCACGGAGGTGTGGGCTTAAAAGGGAA
1 GGTGCCACGGAGTCGTGGACTTATAGAAAAAAAGGATGCCACAGAGGTGTGGGCTTAAAAGGGAA
1738094 AAG
66 AAG
* * *
1738097 GGTGCCACGGAGTCGTGGACTTA-A-AAAGAAAAGG-TGCCACAGAGTTGTGGGCTTTAAAAAGA
1 GGTGCCACGGAGTCGTGGACTTATAGAAA-AAAAGGATGCCACAGAGGTGTGGGC-TTAAAAGGG
1738159 AAAAG
64 AAAAG
1738164 G
1 G
1738165 TGTCATGAAG
Statistics
Matches: 59, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
66 18 0.31
67 19 0.32
68 22 0.37
ACGTcount: A:0.34, C:0.12, G:0.36, T:0.18
Consensus pattern (68 bp):
GGTGCCACGGAGTCGTGGACTTATAGAAAAAAAGGATGCCACAGAGGTGTGGGCTTAAAAGGGAA
AAG
Found at i:1738181 original size:66 final size:67
Alignment explanation
Indices: 1738026--1738199 Score: 174
Period size: 66 Copynumber: 2.6 Consensus size: 67
1738016 TATTGGGCTT
* * * *
1738026 AAAGGTGCCACGGAGTTGTGGACTTATAGGAA-AAAGGGATGCCACGGAGGTGTGGGCTTAAAAG
1 AAAGGTGCCACGAAGTTGTGGACTTA-A-AAAGAAAAGGATGCCACAGAGGTGTGGGCTTAAAAG
*
1738090 GGAA
64 AGAA
* * * *
1738094 AAGGGTGCCACGGAGTCGTGGACTTAAAAAGAAAAGG-TGCCACAGAGTTGTGGGCTTTAAAA-A
1 AAAGGTGCCACGAAGTTGTGGACTTAAAAAGAAAAGGATGCCACAGAGGTGTGGGC-TTAAAAGA
1738157 GAA
65 GAA
* * * * *
1738160 AAAGGTGTCATGAAGTTGTGGACGTAAAAGGAAAAAGATG
1 AAAGGTGCCACGAAGTTGTGGACTTAAAAAGAAAAGGATG
1738200 TCACGAACTT
Statistics
Matches: 88, Mismatches: 15, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
66 50 0.57
67 14 0.16
68 24 0.27
ACGTcount: A:0.36, C:0.11, G:0.34, T:0.18
Consensus pattern (67 bp):
AAAGGTGCCACGAAGTTGTGGACTTAAAAAGAAAAGGATGCCACAGAGGTGTGGGCTTAAAAGAG
AA
Found at i:1738188 original size:33 final size:32
Alignment explanation
Indices: 1738111--1738213 Score: 100
Period size: 33 Copynumber: 3.1 Consensus size: 32
1738101 CCACGGAGTC
* *
1738111 GTGGACTTAAAAAG-AAAAGGTGCCACAGAGTT
1 GTGGACTTAAAAAGAAAAAGGTGTCAGA-AGTT
*
1738143 GTGGGCTTTAAAAAGAAAAAGGTGTCATGAAGTT
1 GTGGAC-TTAAAAAGAAAAAGGTGTCA-GAAGTT
* * * *
1738177 GTGGACGTAAAAGGAAAAAGATGTCACGAACTT
1 GTGGACTTAAAAAGAAAAAGGTGTCA-GAAGTT
1738210 GTGG
1 GTGG
1738214 GCTTTTGAAG
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
32 5 0.08
33 34 0.58
34 19 0.32
35 1 0.02
ACGTcount: A:0.39, C:0.10, G:0.30, T:0.21
Consensus pattern (32 bp):
GTGGACTTAAAAAGAAAAAGGTGTCAGAAGTT
Found at i:1738326 original size:28 final size:28
Alignment explanation
Indices: 1738206--1738369 Score: 123
Period size: 30 Copynumber: 5.7 Consensus size: 28
1738196 GATGTCACGA
* * *
1738206 ACTTGTGGGCTTTTGAAGGCTGCCATTA
1 ACTTGTGGGCTTTTGAAGGATGCCACTG
* * *
1738234 ACTTGTGGGC-TTTGAAAAAGTTTCCACTG
1 ACTTGTGGGCTTTTG--AAGGATGCCACTG
* * * *
1738263 ACCTATGGGCTTTGGAAAAAGATGCCACTG
1 ACTTGTGGGCTTTTG--AAGGATGCCACTG
* *
1738293 ACTTGTGGGCTTTTGAAGGTTGTCACTG
1 ACTTGTGGGCTTTTGAAGGATGCCACTG
* * * *
1738321 AGTTGTGAGCTTTGGAAAAAGATGCCACTG
1 ACTTGTGGGCTTTTG--AAGGATGCCACTG
1738351 ACTTGTGGGCTTTTGAAGG
1 ACTTGTGGGCTTTTGAAGG
1738370 GTAAGGAATG
Statistics
Matches: 105, Mismatches: 26, Indels: 10
0.74 0.18 0.07
Matches are distributed among these distances:
27 4 0.04
28 35 0.33
29 16 0.15
30 50 0.48
ACGTcount: A:0.23, C:0.16, G:0.29, T:0.32
Consensus pattern (28 bp):
ACTTGTGGGCTTTTGAAGGATGCCACTG
Found at i:1738397 original size:58 final size:57
Alignment explanation
Indices: 1738276--1738397 Score: 131
Period size: 58 Copynumber: 2.1 Consensus size: 57
1738266 TATGGGCTTT
** * * * * *
1738276 GGAAAAAGATGCCACTGACTTGTGGGCTTTTGAAGGTTGTCACTGAGTTGTGAGCTTT
1 GGAAAAAGATGCCACTGACTTGTGGGCTTTTGAAGG-TGTCAAGGAATTCTAACCTTA
1738334 GGAAAAAGATGCCACTGACTTGTGGGCTTTTGAAGG-GT-AAGGAATGTCTAATCCTTA
1 GGAAAAAGATGCCACTGACTTGTGGGCTTTTGAAGGTGTCAAGGAAT-TCTAA-CCTTA
1738391 GTGAAAA
1 G-GAAAA
1738398 GATCAAGGCT
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
55 4 0.07
56 5 0.09
57 4 0.07
58 41 0.76
ACGTcount: A:0.28, C:0.13, G:0.30, T:0.30
Consensus pattern (57 bp):
GGAAAAAGATGCCACTGACTTGTGGGCTTTTGAAGGTGTCAAGGAATTCTAACCTTA
Found at i:1739739 original size:101 final size:97
Alignment explanation
Indices: 1739612--1739791 Score: 236
Period size: 101 Copynumber: 1.8 Consensus size: 97
1739602 TGAAGAAGAA
*
1739612 TGCCAATGTGCTGAGACAAGGCCAGCGACATTGGGCTT-AGGAATGTTAAAGATGCCAATATGCT
1 TGCCAATATGCTGAGACAAGGCCAGCGACATTGGGCTTAAGG-A---T-AAGATGCCAATATGCT
*
1739676 GATTCAAGGCCAACGATATCGGACTTAAAGATGAAAG
61 GAATCAAGGCCAACGATATCGGACTTAAAGATGAAAG
** * * *
1739713 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAGGATAAGGTGCCAATATGTTGAATC
1 TGCCAATATGCTGAGACAAGGCCAGCGACATTGGGCTTAAGGATAAGATGCCAATATGCTGAATC
*
1739778 AAGGCCAGCGATAT
66 AAGGCCAACGATAT
1739792 TAGGCTTAAA
Statistics
Matches: 70, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
97 31 0.44
98 1 0.01
101 35 0.50
102 3 0.04
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.23
Consensus pattern (97 bp):
TGCCAATATGCTGAGACAAGGCCAGCGACATTGGGCTTAAGGATAAGATGCCAATATGCTGAATC
AAGGCCAACGATATCGGACTTAAAGATGAAAG
Found at i:1739800 original size:48 final size:49
Alignment explanation
Indices: 1739568--1739802 Score: 201
Period size: 49 Copynumber: 4.8 Consensus size: 49
1739558 CGAGGAATGA
* * * * * * *
1739568 CAATGTGCTAATTCATGGCCAGCGACATTAGACTTGAAGAAG-AA-TGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAGTGC
* ** * * *
1739615 CAATGTGCTGAGACAAGGCCAGCGACATTGGGCTTAGGAATG-TTAAAGATGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTA--AA-GATGAAAG-TGC
* *
1739667 CAATATGCTGATTCAAGGCCAACGATATCGGACTTAAAGATGAAAGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAGTGC
* * * *
1739716 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAGGAT-AAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAGTGC
* *
1739764 CAATATGTTGAATCAAGGCCAGCGATATTAGG-CTTAAAG
1 CAATATGCTGATTCAAGGCCAGCGATATT-GGACTTAAAG
1739803 GTGCCACGGA
Statistics
Matches: 153, Mismatches: 27, Indels: 15
0.78 0.14 0.08
Matches are distributed among these distances:
47 29 0.19
48 38 0.25
49 44 0.29
50 10 0.07
52 32 0.21
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.23
Consensus pattern (49 bp):
CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAGTGC
Found at i:1739801 original size:97 final size:97
Alignment explanation
Indices: 1739584--1739802 Score: 239
Period size: 97 Copynumber: 2.2 Consensus size: 97
1739574 GCTAATTCAT
* * * *
1739584 GGCCAGCGACATTAGACTTGAAGAAGAATGCCAATGTGCTGAGACAAGGCCAGCGACATTGGGCT
1 GGCCAGCGATATTAGGCTTAAAGAAGAATGCCAATATGCTGAGACAAGGCCAGCGACATTGGGCT
*
1739649 TAGGAATGTTAAAGATGCCAATATGCTGATTCAA
66 TAGGAA--TTAAAGATGCCAATATGCTGAATCAA
* * * **
1739683 GGCCAACGATA-TCGGACTTAAAGATGAAAGTGCCAATATGCTGATTCAAGGCCAGCGACATTGG
1 GGCCAGCGATATTAGG-CTTAAAGAAG-AA-TGCCAATATGCTGAGACAAGGCCAGCGACATTGG
* * *
1739747 TCTTAAGG-A-T-AAGGTGCCAATATGTTGAATCAA
63 GCTT-AGGAATTAAAGATGCCAATATGCTGAATCAA
1739780 GGCCAGCGATATTAGGCTTAAAG
1 GGCCAGCGATATTAGGCTTAAAG
1739803 GTGCCACGGA
Statistics
Matches: 100, Mismatches: 15, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
97 37 0.37
98 6 0.06
99 17 0.17
100 2 0.02
101 35 0.35
102 3 0.03
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.22
Consensus pattern (97 bp):
GGCCAGCGATATTAGGCTTAAAGAAGAATGCCAATATGCTGAGACAAGGCCAGCGACATTGGGCT
TAGGAATTAAAGATGCCAATATGCTGAATCAA
Found at i:1739953 original size:65 final size:67
Alignment explanation
Indices: 1739850--1739990 Score: 164
Period size: 65 Copynumber: 2.1 Consensus size: 67
1739840 CCATGGAGGT
* * *
1739850 GTGGGC-TTAAAAGGGAAAAAAGTGCCACGGAGTCGTGGACTTAAAA-AAAAATG-TGCCACGGA
1 GTGGGCTTTAAAAGAGAAAAAAGTGCCACAGAGTCGTGGACATAAAAGAAAAA-GATGCCACGGA
*
1739912 GTC
65 CTC
* * *
1739915 GTGGGCTTTAAAA-AGAAAAAGGTGTCACAGAGTTGTGGACATAAAAGGAAAAAGATGCCACGGA
1 GTGGGCTTTAAAAGAGAAAAAAGTGCCACAGAGTCGTGGACATAAAA-GAAAAAGATGCCACGGA
*
1739979 CTT
65 CTC
1739982 GTGGGCTTT
1 GTGGGCTTT
1739991 TGAAGGTTGC
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
65 33 0.52
66 7 0.11
67 24 0.38
ACGTcount: A:0.36, C:0.13, G:0.30, T:0.20
Consensus pattern (67 bp):
GTGGGCTTTAAAAGAGAAAAAAGTGCCACAGAGTCGTGGACATAAAAGAAAAAGATGCCACGGAC
TC
Found at i:1739985 original size:33 final size:33
Alignment explanation
Indices: 1739799--1739978 Score: 129
Period size: 34 Copynumber: 5.4 Consensus size: 33
1739789 TATTAGGCTT
* ** *
1739799 AAAGGTGCCACGGAGTTATGGACTT-ATAGGAA
1 AAAGATGCCACGGAGTCGTGGACTTAAAAGGAA
* * *
1739831 AAAGGGATACCATGGAGGT-GTGGGCTTAAAAGGGAA
1 AAA--GATGCCACGGA-GTCGTGGACTTAAAA-GGAA
1739867 AAA-AGTGCCACGGAGTCGTGGACTTAAAA--AA
1 AAAGA-TGCCACGGAGTCGTGGACTTAAAAGGAA
* *
1739898 AAATG-TGCCACGGAGTCGTGGGCTTTAAAAAGAA
1 AAA-GATGCCACGGAGTCGTGGAC-TTAAAAGGAA
* * * * *
1739932 AAAGGTGTCACAGAGTTGTGGACATAAAAGGAA
1 AAAGATGCCACGGAGTCGTGGACTTAAAAGGAA
1739965 AAAGATGCCACGGA
1 AAAGATGCCACGGA
1739979 CTTGTGGGCT
Statistics
Matches: 116, Mismatches: 19, Indels: 25
0.73 0.12 0.16
Matches are distributed among these distances:
31 22 0.19
32 9 0.08
33 23 0.20
34 51 0.44
35 4 0.03
36 7 0.06
ACGTcount: A:0.38, C:0.13, G:0.31, T:0.18
Consensus pattern (33 bp):
AAAGATGCCACGGAGTCGTGGACTTAAAAGGAA
Found at i:1740002 original size:28 final size:28
Alignment explanation
Indices: 1739968--1740168 Score: 233
Period size: 28 Copynumber: 7.0 Consensus size: 28
1739958 AAAGGAAAAA
*
1739968 GATGCCACGGACTTGTGGGCTTTTGAAG
1 GATGCCACTGACTTGTGGGCTTTTGAAG
* *
1739996 GTTGCCACTGGCTTGTGGGCTTTTGAAG
1 GATGCCACTGACTTGTGGGCTTTTGAAG
* *
1740024 GATGCGACTGACTTGTGGGC-TTTGAAAAA
1 GATGCCACTGACTTGTGGGCTTTTG--AAG
* * *
1740053 GATGCCACTGACCTGTGGGCATTTGAAAAA
1 GATGCCACTGACTTGTGGGCTTTTG--AAG
*
1740083 GATGCCACTAACTTGTGGGCTTTTGAAG
1 GATGCCACTGACTTGTGGGCTTTTGAAG
* * *
1740111 GTTGCCACTGACTTGTGGGCTTTGGAAAA
1 GATGCCACTGACTTGTGGGCTTTTG-AAG
*
1740140 GATACCACTGACTTGTGGGCTTTTGAAG
1 GATGCCACTGACTTGTGGGCTTTTGAAG
1740168 G
1 G
1740169 GTGAGGAACA
Statistics
Matches: 148, Mismatches: 21, Indels: 8
0.84 0.12 0.05
Matches are distributed among these distances:
27 4 0.03
28 69 0.47
29 44 0.30
30 31 0.21
ACGTcount: A:0.21, C:0.17, G:0.31, T:0.30
Consensus pattern (28 bp):
GATGCCACTGACTTGTGGGCTTTTGAAG
Found at i:1740121 original size:87 final size:87
Alignment explanation
Indices: 1739962--1740166 Score: 297
Period size: 87 Copynumber: 2.4 Consensus size: 87
1739952 GACATAAAAG
* * * **
1739962 GAAAAAGATGCCACGGACTTGTGGGCTTTTG--AAGGTTGCCACTGGCTTGTGGGCTTTTGAAGG
1 GAAAAAGATGCCACTGACTTGTGGGCTTTTGAAAAAGATGCCACTAACTTGTGGGCTTTTGAAGG
*
1740025 ATGCGACTGACTTGTGGGCTTT
66 ATGCCACTGACTTGTGGGCTTT
* *
1740047 GAAAAAGATGCCACTGACCTGTGGGCATTTGAAAAAGATGCCACTAACTTGTGGGCTTTTGAAGG
1 GAAAAAGATGCCACTGACTTGTGGGCTTTTGAAAAAGATGCCACTAACTTGTGGGCTTTTGAAGG
*
1740112 TTGCCACTGACTTGTGGGCTTT
66 ATGCCACTGACTTGTGGGCTTT
* *
1740134 GGAAAAGATACCACTGACTTGTGGGCTTTTGAA
1 GAAAAAGATGCCACTGACTTGTGGGCTTTTGAA
1740167 GGGTGAGGAA
Statistics
Matches: 105, Mismatches: 13, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
85 28 0.27
87 77 0.73
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.29
Consensus pattern (87 bp):
GAAAAAGATGCCACTGACTTGTGGGCTTTTGAAAAAGATGCCACTAACTTGTGGGCTTTTGAAGG
ATGCCACTGACTTGTGGGCTTT
Found at i:1741533 original size:49 final size:48
Alignment explanation
Indices: 1741469--1741601 Score: 140
Period size: 48 Copynumber: 2.8 Consensus size: 48
1741459 AAGAGCCCAG
* * * *
1741469 TATGCTGATTAAAGGCCAATGATATCGGACTTAAAGATGAAAGTGCTAA
1 TATGCTGATTCAAGGCCAATGATATTGGACTTAAAGAT-AAAGTACCAA
* * * * *
1741518 TATGCCGATTCAAGGCCAATGACATTGGTCGTAAAGATAACGTACCAA
1 TATGCTGATTCAAGGCCAATGATATTGGACTTAAAGATAAAGTACCAA
* ** *
1741566 TATGCTGATTCAAAGCCAGCGATATTGGGCTTAAAG
1 TATGCTGATTCAAGGCCAATGATATTGGACTTAAAG
1741602 GTGCCACAGA
Statistics
Matches: 68, Mismatches: 16, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
48 36 0.53
49 32 0.47
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.26
Consensus pattern (48 bp):
TATGCTGATTCAAGGCCAATGATATTGGACTTAAAGATAAAGTACCAA
Found at i:1741700 original size:33 final size:33
Alignment explanation
Indices: 1741598--1741774 Score: 137
Period size: 34 Copynumber: 5.3 Consensus size: 33
1741588 TATTGGGCTT
* *
1741598 AAAGGTGCCAC-AGAGTTGTGGACTT-ATAGGAA
1 AAAGGTGCCACGA-AGTTGTGGACTTAAAAAGAA
* * **
1741630 AAAGGGATGCCAC-AGAGGTGTGGGCTTTAAAGGGAA
1 AAA-GG-TGCCACGA-AGTTGTGGAC-TTAAAAAGAA
* * *
1741666 AAGGGTGCCATGAAATTGTGGACTTAAAAAG-A
1 AAAGGTGCCACGAAGTTGTGGACTTAAAAAGAA
* *
1741698 AAAGGTGCCACGAAGTTCTGGGCATTAAAAAGAA
1 AAAGGTGCCACGAAGTTGTGGAC-TTAAAAAGAA
* * *
1741732 AAAGGTGCCACGGAGCTGTGGACTTAAAAGGAA
1 AAAGGTGCCACGAAGTTGTGGACTTAAAAAGAA
*
1741765 AAAGATGCCA
1 AAAGGTGCCA
1741775 TGGACTTGTG
Statistics
Matches: 116, Mismatches: 22, Indels: 13
0.77 0.15 0.09
Matches are distributed among these distances:
32 22 0.19
33 34 0.29
34 48 0.41
35 5 0.04
36 7 0.06
ACGTcount: A:0.38, C:0.13, G:0.31, T:0.18
Consensus pattern (33 bp):
AAAGGTGCCACGAAGTTGTGGACTTAAAAAGAA
Found at i:1741785 original size:33 final size:33
Alignment explanation
Indices: 1741663--1741785 Score: 115
Period size: 33 Copynumber: 3.7 Consensus size: 33
1741653 GCTTTAAAGG
* * *
1741663 GAAAAGGGTGCCATGAAATTGTGGACTTAAAAA
1 GAAAAAGGTGCCACGAACTTGTGGACTTAAAAA
* * *
1741696 G-AAAAGGTGCCACGAAGTTCTGGGCATTAAAAA
1 GAAAAAGGTGCCACGAACTTGTGGAC-TTAAAAA
* *
1741729 GAAAAAGGTGCCACGGAGC-TGTGGACTTAAAAG
1 GAAAAAGGTGCCAC-GAACTTGTGGACTTAAAAA
* * *
1741762 GAAAAAGATGCCATGGACTTGTGG
1 GAAAAAGGTGCCACGAACTTGTGG
1741786 GCCTTTGAAG
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
32 21 0.29
33 32 0.44
34 17 0.24
35 2 0.03
ACGTcount: A:0.38, C:0.13, G:0.30, T:0.19
Consensus pattern (33 bp):
GAAAAAGGTGCCACGAACTTGTGGACTTAAAAA
Found at i:1741810 original size:28 final size:27
Alignment explanation
Indices: 1741777--1741968 Score: 213
Period size: 28 Copynumber: 6.7 Consensus size: 27
1741767 AGATGCCATG
1741777 GACTTGTGGGCCTTTGAAGGTTGCCACT
1 GACTTGTGGG-CTTTGAAGGTTGCCACT
*
1741805 GACTTGTGGGATTTTGAAGGTTGCCACT
1 GACTTGTGGG-CTTTGAAGGTTGCCACT
*
1741833 GACTTGTGGGCTTTGAAAAAGTTGCCACT
1 GACTTGTGGGCTTTG--AAGGTTGCCACT
* * *
1741862 GACCTGTGGGCTTTTGAAAAAGATGCCACT
1 GACTTGTGGGC-TTTG--AAGGTTGCCACT
1741892 GACTTGTGGGCTTTCGAAGGTTGCCACT
1 GACTTGTGGGCTTT-GAAGGTTGCCACT
* *
1741920 GACTTGTGGGATTTGGAAAAGTTGCCACT
1 GACTTGTGGGCTTT-G-AAGGTTGCCACT
*
1741949 AACTTGTGGGCTTTTGAAGG
1 GACTTGTGGGC-TTTGAAGG
1741969 GTGAGGAATG
Statistics
Matches: 143, Mismatches: 15, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
27 4 0.03
28 63 0.44
29 45 0.31
30 31 0.22
ACGTcount: A:0.20, C:0.17, G:0.31, T:0.32
Consensus pattern (27 bp):
GACTTGTGGGCTTTGAAGGTTGCCACT
Found at i:1741870 original size:57 final size:56
Alignment explanation
Indices: 1741764--1741968 Score: 261
Period size: 57 Copynumber: 3.6 Consensus size: 56
1741754 CTTAAAAGGA
*
1741764 AAAAGATGCCA-TGGACTTGTGGGCCTTTGAAGGTTGCCACTGACTTGTGGGATTTTG
1 AAAAGTTGCCACT-GACTTGTGGG-CTTTGAAGGTTGCCACTGACTTGTGGGATTTTG
* * * *
1741821 -AAGGTTGCCACTGACTTGTGGGCTTTGAAAAAGTTGCCACTGACCTGTGGGCTTTTG
1 AAAAGTTGCCACTGACTTGTGGGCTTTG--AAGGTTGCCACTGACTTGTGGGATTTTG
* *
1741878 AAAAAGATGCCACTGACTTGTGGGCTTTCGAAGGTTGCCACTGACTTGTGGGATTTGG
1 -AAAAGTTGCCACTGACTTGTGGGCTTT-GAAGGTTGCCACTGACTTGTGGGATTTTG
*
1741936 AAAAGTTGCCACTAACTTGTGGGCTTTTGAAGG
1 AAAAGTTGCCACTGACTTGTGGGC-TTTGAAGG
1741969 GTGAGGAATG
Statistics
Matches: 128, Mismatches: 13, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
55 5 0.04
56 18 0.14
57 53 0.41
58 27 0.21
59 24 0.19
60 1 0.01
ACGTcount: A:0.22, C:0.17, G:0.30, T:0.31
Consensus pattern (56 bp):
AAAAGTTGCCACTGACTTGTGGGCTTTGAAGGTTGCCACTGACTTGTGGGATTTTG
Found at i:1741914 original size:87 final size:87
Alignment explanation
Indices: 1741798--1741966 Score: 284
Period size: 87 Copynumber: 1.9 Consensus size: 87
1741788 CTTTGAAGGT
* * *
1741798 TGCCACTGACTTGTGGGATTTTGAAGGTTGCCACTGACTTGTGGGCTTTGAAAAAGTTGCCACTG
1 TGCCACTGACTTGTGGGATTTCGAAGGTTGCCACTGACTTGTGGGATTTGAAAAAGTTGCCACTA
1741863 ACCTGTGGGCTTTTGAAAAAGA
66 ACCTGTGGGCTTTTGAAAAAGA
* *
1741885 TGCCACTGACTTGTGGGCTTTCGAAGGTTGCCACTGACTTGTGGGATTTGGAAAAGTTGCCACTA
1 TGCCACTGACTTGTGGGATTTCGAAGGTTGCCACTGACTTGTGGGATTTGAAAAAGTTGCCACTA
*
1741950 ACTTGTGGGCTTTTGAA
66 ACCTGTGGGCTTTTGAA
1741967 GGGTGAGGAA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
87 76 1.00
ACGTcount: A:0.21, C:0.18, G:0.29, T:0.32
Consensus pattern (87 bp):
TGCCACTGACTTGTGGGATTTCGAAGGTTGCCACTGACTTGTGGGATTTGAAAAAGTTGCCACTA
ACCTGTGGGCTTTTGAAAAAGA
Found at i:1743376 original size:48 final size:49
Alignment explanation
Indices: 1743259--1743402 Score: 173
Period size: 48 Copynumber: 2.9 Consensus size: 49
1743249 TACGAATGTT
* * *
1743259 AAAGATGCCAATATGCTAATTCAAGGCCAACGATATCGGACTTAAAGATG
1 AAAG-TGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATC
* * * * **
1743309 AAAGTGCCAATATGGTGATTCGAGGCCAATGACATTGGTTTTAAAGA-C
1 AAAGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATC
* *
1743357 AAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGGCTTAAAG
1 AAAGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAG
1743403 GTGCCACAGA
Statistics
Matches: 78, Mismatches: 16, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
48 39 0.50
49 35 0.45
50 4 0.05
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.24
Consensus pattern (49 bp):
AAAGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATC
Found at i:1743476 original size:34 final size:34
Alignment explanation
Indices: 1743402--1743566 Score: 164
Period size: 34 Copynumber: 5.0 Consensus size: 34
1743392 TGGGCTTAAA
* * *
1743402 GGTGCCACAGAGTTGTGAACTTATAGGA-AAAAG
1 GGTGCCACAGAGTTGTGGACTTAAAAGAGAAAAG
* *
1743435 GGATGCCACAGAGGTGTGGGCTTAAAAGAGAAAAG
1 GG-TGCCACAGAGTTGTGGACTTAAAAGAGAAAAG
* * *
1743470 GGTGCCATTA-AGTCGTGGACATAAAA-AGAAAA-
1 GGTGCCA-CAGAGTTGTGGACTTAAAAGAGAAAAG
* *
1743502 GGTGCCACAGAGTTGTGGGCTTTAAAA-A-AAAAA
1 GGTGCCACAGAGTTGTGGAC-TTAAAAGAGAAAAG
1743535 GGTGCCACAGAGTTGTGGACTTAAAAG-GAAAA
1 GGTGCCACAGAGTTGTGGACTTAAAAGAGAAAA
1743567 AGATGTCACG
Statistics
Matches: 109, Mismatches: 15, Indels: 16
0.78 0.11 0.11
Matches are distributed among these distances:
31 1 0.01
32 25 0.23
33 37 0.34
34 38 0.35
35 8 0.07
ACGTcount: A:0.39, C:0.12, G:0.30, T:0.19
Consensus pattern (34 bp):
GGTGCCACAGAGTTGTGGACTTAAAAGAGAAAAG
Found at i:1743567 original size:33 final size:33
Alignment explanation
Indices: 1743399--1743568 Score: 168
Period size: 33 Copynumber: 5.1 Consensus size: 33
1743389 TATTGGGCTT
* *
1743399 AAAGGTGCCACAGAGTTGTGAACTT-ATAGGAA
1 AAAGGTGCCACAGAGTTGTGGACTTAAAAGGAA
* *
1743431 AAAGGGATGCCACAGAGGTGTGGGCTTAAAAGAGAA
1 AAA-GG-TGCCACAGAGTTGTGGACTTAAAAG-GAA
* * * * *
1743467 AAGGGTGCCATTA-AGTCGTGGACATAAAAAG-A
1 AAAGGTGCCA-CAGAGTTGTGGACTTAAAAGGAA
* *
1743499 AAAGGTGCCACAGAGTTGTGGGCTTTAAAA-AAA
1 AAAGGTGCCACAGAGTTGTGGAC-TTAAAAGGAA
1743532 AAAGGTGCCACAGAGTTGTGGACTTAAAAGGAA
1 AAAGGTGCCACAGAGTTGTGGACTTAAAAGGAA
1743565 AAAG
1 AAAG
1743569 ATGTCACGAA
Statistics
Matches: 110, Mismatches: 19, Indels: 17
0.75 0.13 0.12
Matches are distributed among these distances:
31 1 0.01
32 27 0.25
33 37 0.34
34 34 0.31
35 6 0.05
36 5 0.05
ACGTcount: A:0.40, C:0.12, G:0.30, T:0.18
Consensus pattern (33 bp):
AAAGGTGCCACAGAGTTGTGGACTTAAAAGGAA
Found at i:1743568 original size:66 final size:68
Alignment explanation
Indices: 1743399--1743568 Score: 199
Period size: 65 Copynumber: 2.5 Consensus size: 68
1743389 TATTGGGCTT
* *
1743399 AAAGGTGCCACAGAGTTGTGAACTT-ATAGGAAAAAGGGATGCCACAGAGGTGTGGGCTTAAAAG
1 AAAGGTGCCACAGAGTTGTGGACTTAAAAGGAAAAA-GGATGCCACAGAGGTGTGGGCTTAAAAG
1743463 AGAA
65 AGAA
* * * * * *
1743467 AAGGGTGCCATTA-AGTCGTGGACATAAAAAG-AAAAGG-TGCCACAGAGTTGTGGGCTTTAAAA
1 AAAGGTGCCA-CAGAGTTGTGGACTTAAAAGGAAAAAGGATGCCACAGAGGTGTGGGC-TTAAAA
1743529 -A-AA
64 GAGAA
1743532 AAAGGTGCCACAGAGTTGTGGACTTAAAAGGAAAAAG
1 AAAGGTGCCACAGAGTTGTGGACTTAAAAGGAAAAAG
1743569 ATGTCACGAA
Statistics
Matches: 84, Mismatches: 13, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
64 1 0.01
65 26 0.31
66 23 0.27
67 8 0.10
68 22 0.26
69 4 0.05
ACGTcount: A:0.40, C:0.12, G:0.30, T:0.18
Consensus pattern (68 bp):
AAAGGTGCCACAGAGTTGTGGACTTAAAAGGAAAAAGGATGCCACAGAGGTGTGGGCTTAAAAGA
GAA
Found at i:1743618 original size:28 final size:28
Alignment explanation
Indices: 1743578--1743650 Score: 119
Period size: 28 Copynumber: 2.6 Consensus size: 28
1743568 GATGTCACGA
*
1743578 ACTTTTGGGCTTTTGAAGGTTGCCACTG
1 ACTTGTGGGCTTTTGAAGGTTGCCACTG
*
1743606 ACTTGTGGGCTTTTGAAGGTTGCCATTG
1 ACTTGTGGGCTTTTGAAGGTTGCCACTG
*
1743634 CCTTGTGGGCTTTTGAA
1 ACTTGTGGGCTTTTGAA
1743651 CTCTCCCAAG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.14, C:0.16, G:0.30, T:0.40
Consensus pattern (28 bp):
ACTTGTGGGCTTTTGAAGGTTGCCACTG
Found at i:1744962 original size:49 final size:48
Alignment explanation
Indices: 1744900--1745022 Score: 174
Period size: 49 Copynumber: 2.5 Consensus size: 48
1744890 TAGGATTGTT
* *
1744900 AAAGATGCCAATATGCTGATTCAAGGCCAACGATATCGGACTTAAAGATG
1 AAAG-TGCCAATATGCTGATTCAAGGCCAACGACATCGGACTTAAAGA-C
* * *
1744950 AAAGTGCCAATATGCTGATTCAAGGCCAATGACATTGGTCTTAAAGAC
1 AAAGTGCCAATATGCTGATTCAAGGCCAACGACATCGGACTTAAAGAC
*
1744998 AAGGTGCCAATATGCTGATTCAAGG
1 AAAGTGCCAATATGCTGATTCAAGG
1745023 GTAGTGATAT
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
48 24 0.36
49 39 0.58
50 4 0.06
ACGTcount: A:0.36, C:0.18, G:0.23, T:0.24
Consensus pattern (48 bp):
AAAGTGCCAATATGCTGATTCAAGGCCAACGACATCGGACTTAAAGAC
Found at i:1745035 original size:48 final size:49
Alignment explanation
Indices: 1744900--1745043 Score: 191
Period size: 48 Copynumber: 2.9 Consensus size: 49
1744890 TAGGATTGTT
* * *
1744900 AAAGATGCCAATATGCTGATTCAAGGCCAACGATATCGGACTTAAAGATG
1 AAAG-TGCCAATATGCTGATTCAAGGCCAATGATATTGGACTTAAAGATC
* *
1744950 AAAGTGCCAATATGCTGATTCAAGGCCAATGACATTGGTCTTAAAGA-C
1 AAAGTGCCAATATGCTGATTCAAGGCCAATGATATTGGACTTAAAGATC
* ** *
1744998 AAGGTGCCAATATGCTGATTCAAGGGTAGTGATATTGGACTTAAAG
1 AAAGTGCCAATATGCTGATTCAAGGCCAATGATATTGGACTTAAAG
1745044 GTGCCACGGA
Statistics
Matches: 83, Mismatches: 11, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
48 40 0.48
49 39 0.47
50 4 0.05
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.25
Consensus pattern (49 bp):
AAAGTGCCAATATGCTGATTCAAGGCCAATGATATTGGACTTAAAGATC
Found at i:1745168 original size:33 final size:33
Alignment explanation
Indices: 1745040--1745227 Score: 164
Period size: 34 Copynumber: 5.6 Consensus size: 33
1745030 TATTGGACTT
* * *
1745040 AAAGGTGCCACGGAGTTGTGAACTT-ATAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAAGAA
* * * *
1745072 AAAGGGATGCCACAGAGGTATAGACTTAAAAGAGAA
1 AAA-GG-TGCCACGGAGTTGTGGACTTAAAA-AGAA
* * * *
1745108 AAGGGTGCCATGTAGTCGTGGACTTAAAAAG-A
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAAGAA
* * *
1745140 AAAGGTGCCATGGAATTGTGGGCTTTAAAAAGAA
1 AAAGGTGCCACGGAGTTGTGGAC-TTAAAAAGAA
* *
1745174 AAAGGTGCCACAGAGTTGTGGACTTAAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAAGAA
* *
1745207 AAAGATGCCACGGACTTGTGG
1 AAAGGTGCCACGGAGTTGTGG
1745228 GCTTTTGAAG
Statistics
Matches: 122, Mismatches: 28, Indels: 11
0.76 0.17 0.07
Matches are distributed among these distances:
32 22 0.18
33 39 0.32
34 52 0.43
35 4 0.03
36 5 0.04
ACGTcount: A:0.38, C:0.12, G:0.30, T:0.20
Consensus pattern (33 bp):
AAAGGTGCCACGGAGTTGTGGACTTAAAAAGAA
Found at i:1745195 original size:66 final size:68
Alignment explanation
Indices: 1745097--1745232 Score: 179
Period size: 67 Copynumber: 2.0 Consensus size: 68
1745087 AGGTATAGAC
* * * *
1745097 TTAAAAGAGAAAAGGGTGCCATGTAGTCGTGGACTTAAAAAG-AAAAGGTGCCATGGAATTGTGG
1 TTAAAAGAGAAAAAGGTGCCAAGTAGTCGTGGACTTAAAAAGAAAAAGATGCCACGGAATTGTGG
1745161 GCT
66 GCT
* * *
1745164 TTAAAA-AGAAAAAGGTGCCACAG-AGTTGTGGACTTAAAAGGAAAAAGATGCCACGGACTTGTG
1 TTAAAAGAGAAAAAGGTGCCA-AGTAGTCGTGGACTTAAAAAGAAAAAGATGCCACGGAATTGTG
1745227 GGCT
65 GGCT
1745231 TT
1 TT
1745233 TGAAGGTTGC
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
66 29 0.48
67 31 0.52
ACGTcount: A:0.37, C:0.12, G:0.29, T:0.22
Consensus pattern (68 bp):
TTAAAAGAGAAAAAGGTGCCAAGTAGTCGTGGACTTAAAAAGAAAAAGATGCCACGGAATTGTGG
GCT
Found at i:1745245 original size:28 final size:28
Alignment explanation
Indices: 1745212--1745293 Score: 128
Period size: 28 Copynumber: 2.9 Consensus size: 28
1745202 AGGAAAAAGA
*
1745212 TGCCACGGACTTGTGGGCTTTTGAAGGT
1 TGCCACTGACTTGTGGGCTTTTGAAGGT
1745240 TGCCACTGACTTGTGGGCTTTTGAAGGT
1 TGCCACTGACTTGTGGGCTTTTGAAGGT
* *
1745268 TGCCATTGACTTTATGGGCTTTTGAA
1 TGCCACTGAC-TTGTGGGCTTTTGAA
1745294 CTCTCCCAAG
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
28 36 0.72
29 14 0.28
ACGTcount: A:0.16, C:0.17, G:0.30, T:0.37
Consensus pattern (28 bp):
TGCCACTGACTTGTGGGCTTTTGAAGGT
Found at i:1746640 original size:19 final size:19
Alignment explanation
Indices: 1746616--1746664 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
1746606 AAATTTTGTG
*
1746616 CTAAATGATTTTTAACTTA
1 CTAAATGATTTTTAACTCA
1746635 CTAAAT-ATTTTTTAACTCA
1 CTAAATGA-TTTTTAACTCA
*
1746654 CCAAATG-TTTT
1 CTAAATGATTTT
1746665 CTAGTTAAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
18 5 0.19
19 21 0.81
ACGTcount: A:0.35, C:0.14, G:0.04, T:0.47
Consensus pattern (19 bp):
CTAAATGATTTTTAACTCA
Found at i:1746824 original size:20 final size:20
Alignment explanation
Indices: 1746793--1746849 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
1746783 GTCAAAACCC
*
1746793 TGAAAAGTATCGATACACAT
1 TGAAATGTATCGATACACAT
* *
1746813 TTAAATGTATCGATACAGAT
1 TGAAATGTATCGATACACAT
* *
1746833 TGCATTGTATCGATACA
1 TGAAATGTATCGATACA
1746850 TGACCAAATT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.32
Consensus pattern (20 bp):
TGAAATGTATCGATACACAT
Found at i:1753152 original size:13 final size:13
Alignment explanation
Indices: 1753134--1753169 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
1753124 CAGCATTCTC
*
1753134 TGTATCGATACAT
1 TGTATCGATACAG
*
1753147 TGTATCAATACAG
1 TGTATCGATACAG
1753160 TGTATCGATA
1 TGTATCGATA
1753170 TAAGGGAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:1753338 original size:20 final size:20
Alignment explanation
Indices: 1753303--1753343 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 20
1753293 CAAATTTCTT
1753303 GTTTTTCACTTCAAAATACATC
1 GTTTTTCAC-TCAAAAT-CATC
1753325 GTTTTTCA-TCAAAATCATC
1 GTTTTTCACTCAAAATCATC
1753344 AACAAAAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 7 0.37
22 8 0.42
ACGTcount: A:0.32, C:0.22, G:0.05, T:0.41
Consensus pattern (20 bp):
GTTTTTCACTCAAAATCATC
Found at i:1754231 original size:22 final size:23
Alignment explanation
Indices: 1754205--1754250 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
1754195 AGAAAGTGTT
1754205 AAATTATTTT-ACTAAGGGGGAG
1 AAATTATTTTGACTAAGGGGGAG
* *
1754227 AAATTTTTTTGATTAAGGGGGAG
1 AAATTATTTTGACTAAGGGGGAG
1754250 A
1 A
1754251 GAAAAGAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.35, C:0.02, G:0.28, T:0.35
Consensus pattern (23 bp):
AAATTATTTTGACTAAGGGGGAG
Found at i:1754640 original size:18 final size:19
Alignment explanation
Indices: 1754600--1754640 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
1754590 TGCTAAATGA
* * *
1754600 TTTTTAACTTACTAAATGT
1 TTTTTAACTCACCAAACGT
1754619 TTTTTAACTCACCAAACGT
1 TTTTTAACTCACCAAACGT
1754638 TTT
1 TTT
1754641 CTAGTTAAGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.29, C:0.17, G:0.05, T:0.49
Consensus pattern (19 bp):
TTTTTAACTCACCAAACGT
Found at i:1754800 original size:20 final size:20
Alignment explanation
Indices: 1754775--1754844 Score: 77
Period size: 20 Copynumber: 3.5 Consensus size: 20
1754765 ACCCTGAAAA
1754775 GTATCGATACACATTTAAAT
1 GTATCGATACACATTTAAAT
* ** *
1754795 GTATCGATACAGATTGCATT
1 GTATCGATACACATTTAAAT
* **
1754815 GTATCGATACATAACTAAAT
1 GTATCGATACACATTTAAAT
1754835 GTATCGATAC
1 GTATCGATAC
1754845 TTGAAAAGAA
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (20 bp):
GTATCGATACACATTTAAAT
Found at i:1754954 original size:33 final size:32
Alignment explanation
Indices: 1754888--1754955 Score: 100
Period size: 33 Copynumber: 2.1 Consensus size: 32
1754878 GTAGCCAAAC
**
1754888 TTGTATCGATACACATAGTATGTATCGACACA
1 TTGTATCGATACACATAAAATGTATCGACACA
*
1754920 TTGTATCGATACATCATAAAATGTATCGATACA
1 TTGTATCGATACA-CATAAAATGTATCGACACA
1754953 TTG
1 TTG
1754956 GCTTGTAACG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 13 0.41
33 19 0.59
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34
Consensus pattern (32 bp):
TTGTATCGATACACATAAAATGTATCGACACA
Found at i:1755804 original size:49 final size:48
Alignment explanation
Indices: 1755734--1755859 Score: 153
Period size: 49 Copynumber: 2.6 Consensus size: 48
1755724 TAGGAATGTT
* * *
1755734 AAAGATGCTAATATGCTGATTCAAGGCCAATGATATCGGACTTAAAGATA
1 AAAG-TGCCAATATGCTGATTCAAGGCCAACGACATCGGACTTAAAGA-A
* * * *
1755784 AAAGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGAC
1 AAAGTGCCAATATGCTGATTCAAGGCCAACGACATCGGACTTAAAGAA
* *
1755832 AAGGTGCCAATTTGCTGATTCAAGGCCA
1 AAAGTGCCAATATGCTGATTCAAGGCCA
1755860 GCGATATTGG
Statistics
Matches: 67, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
48 26 0.39
49 37 0.55
50 4 0.06
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (48 bp):
AAAGTGCCAATATGCTGATTCAAGGCCAACGACATCGGACTTAAAGAA
Found at i:1755858 original size:48 final size:47
Alignment explanation
Indices: 1755694--1755876 Score: 177
Period size: 48 Copynumber: 3.7 Consensus size: 47
1755684 TTGAGCTTTC
** * *
1755694 ATGCTGAGACAAGGCCAGCGACATTGGGCTTAGGAATGTTAAAGATGCTAAT
1 ATGCTGATTCAAGGCCAGCGACATTGGGCTTA--AA-G--AAAGGTGCCAAT
** * * * *
1755746 ATGCTGATTCAAGGCCAATGATATCGGACTTAAAGATAAAAGTGCCAAT
1 ATGCTGATTCAAGGCCAGCGACATTGGGCTTAAAG--AAAGGTGCCAAT
*
1755795 ATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAAT
1 ATGCTGATTCAAGGCCAGCGACATTGGGCTTAAAGA-AAGGTGCCAAT
* *
1755843 TTGCTGATTCAAGGCCAGCGATATTGGGCTTAAA
1 ATGCTGATTCAAGGCCAGCGACATTGGGCTTAAA
1755877 AGTGCCACGG
Statistics
Matches: 110, Mismatches: 20, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
47 1 0.01
48 41 0.37
49 41 0.37
50 2 0.02
52 25 0.23
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (47 bp):
ATGCTGATTCAAGGCCAGCGACATTGGGCTTAAAGAAAGGTGCCAAT
Found at i:1755875 original size:97 final size:99
Alignment explanation
Indices: 1755694--1755876 Score: 228
Period size: 97 Copynumber: 1.8 Consensus size: 99
1755684 TTGAGCTTTC
*
1755694 ATGCTGAGACAAGGCCAGCGACATTGGGCTTAGGAATGTTAAAGATGCTAATATGCTGATTCAAG
1 ATGCTGAGACAAGGCCAGCGACATTGGGCTTA-GAATG-TAAAGATGCCAATATGCTGATTCAAG
*
1755759 GCCAATGATATCGGACTTAAAGATAAAAGTGCCAAT
64 GCCAACGATATCGGACTTAAAGATAAAAGTGCCAAT
** * * *
1755795 ATGCTGATTCAAGGCCAGCGACATTGGTCTTA-AA-G-ACAAGGTGCCAATTTGCTGATTCAAGG
1 ATGCTGAGACAAGGCCAGCGACATTGGGCTTAGAATGTA-AAGATGCCAATATGCTGATTCAAGG
* * *
1755857 CCAGCGATATTGGGCTTAAA
65 CCAACGATATCGGACTTAAA
1755877 AGTGCCACGG
Statistics
Matches: 71, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
96 1 0.01
97 38 0.54
98 1 0.01
99 2 0.03
101 29 0.41
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (99 bp):
ATGCTGAGACAAGGCCAGCGACATTGGGCTTAGAATGTAAAGATGCCAATATGCTGATTCAAGGC
CAACGATATCGGACTTAAAGATAAAAGTGCCAAT
Found at i:1755951 original size:34 final size:33
Alignment explanation
Indices: 1755874--1756042 Score: 152
Period size: 34 Copynumber: 5.1 Consensus size: 33
1755864 TATTGGGCTT
* * *
1755874 AAAA-GTGCCACGGAGTTATGGACTTATAGGA-
1 AAAAGGTGCCACGGAGTTGTGGACTTAAAAGAG
* *
1755905 AAAAGGGATGCCACGGAGGTGTGGGCTTAAAAGAG
1 AAAA-GG-TGCCACGGAGTTGTGGACTTAAAAGAG
* *
1755940 AAAAGGGTGCCA-TGAATTCGTGGACTTAAAA-AG
1 AAAA-GGTGCCACGGAGTT-GTGGACTTAAAAGAG
** *
1755973 AAAAGGTGCCATAGAGTTGTGGGCTTTAAAA-AGG
1 AAAAGGTGCCACGGAGTTGTGGAC-TTAAAAGA-G
1756007 AAAAGGTGCCACGGAGTTGTGGACTTAAAAG-G
1 AAAAGGTGCCACGGAGTTGTGGACTTAAAAGAG
1756039 AAAA
1 AAAA
1756043 AGATGCCATG
Statistics
Matches: 114, Mismatches: 15, Indels: 17
0.78 0.10 0.12
Matches are distributed among these distances:
31 4 0.04
32 17 0.15
33 27 0.24
34 59 0.52
35 7 0.06
ACGTcount: A:0.37, C:0.11, G:0.32, T:0.20
Consensus pattern (33 bp):
AAAAGGTGCCACGGAGTTGTGGACTTAAAAGAG
Found at i:1756002 original size:33 final size:31
Alignment explanation
Indices: 1755924--1756065 Score: 140
Period size: 33 Copynumber: 4.3 Consensus size: 31
1755914 GCCACGGAGG
*
1755924 TGTGGGCTTAAAAGAGAAAAGGGTGCCATGAAT
1 TGTGGGCTTAAAA-AGAAAA-GGTGCCATGAGT
*
1755957 TCGTGGACTTAAAAAGAAAAGGTGCCATAGAGT
1 T-GTGGGCTTAAAAAGAAAAGGTGCCAT-GAGT
*
1755990 TGTGGGCTTTAAAAAGGAAAAGGTGCCACGGAGT
1 TGTGGGC-TTAAAAA-GAAAAGGTGCCA-TGAGT
* * * *
1756024 TGTGGACTTAAAAGGAAAAAGATGCCATGAACT
1 TGTGGGCTTAAAAAG-AAAAGGTGCCATG-AGT
1756057 TGTGGGCTT
1 TGTGGGCTT
1756066 TTGAAGGTTG
Statistics
Matches: 92, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
32 15 0.16
33 44 0.48
34 33 0.36
ACGTcount: A:0.35, C:0.11, G:0.31, T:0.23
Consensus pattern (31 bp):
TGTGGGCTTAAAAAGAAAAGGTGCCATGAGT
Found at i:1756029 original size:66 final size:65
Alignment explanation
Indices: 1755874--1756066 Score: 171
Period size: 67 Copynumber: 2.9 Consensus size: 65
1755864 TATTGGGCTT
* * * * *
1755874 AAAA-GTGCCACGGAGTTATGGACTTATAGGAA-AAAGGGATGCCACGGAGGTGTGGGC-TTAAA
1 AAAAGGTGCCACGGAGTTGTGGACTTA-A-AAAGAAAAGG-TGCCA-TGAGTTGTGGGCTTTAAA
1755936 AGAG
62 AGAG
* *
1755940 AAAAGGGTGCCA-TGAATTCGTGGACTTAAAAAGAAAAGGTGCCATAGAGTTGTGGGCTTTAAAA
1 AAAA-GGTGCCACGGAGTT-GTGGACTTAAAAAGAAAAGGTGCCAT-GAGTTGTGGGCTTTAAAA
1756004 -AGG
63 GA-G
* * *
1756007 AAAAGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAGATGCCATGAACTTGTGGGCTTT
1 AAAAGGTGCCACGGAGTTGTGGACTTAAAAAG-AAAAGGTGCCATG-AGTTGTGGGCTTT
1756067 TGAAGGTTGC
Statistics
Matches: 105, Mismatches: 12, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
66 43 0.41
67 48 0.46
68 14 0.13
ACGTcount: A:0.35, C:0.12, G:0.32, T:0.21
Consensus pattern (65 bp):
AAAAGGTGCCACGGAGTTGTGGACTTAAAAAGAAAAGGTGCCATGAGTTGTGGGCTTTAAAAGAG
Found at i:1756156 original size:30 final size:30
Alignment explanation
Indices: 1756038--1756242 Score: 203
Period size: 28 Copynumber: 7.1 Consensus size: 30
1756028 GACTTAAAAG
1756038 GAAAAAGATGCCA-TGAACTTGTGGGCTTTT
1 GAAAAAGATGCCACTG-ACTTGTGGGCTTTT
* * * *
1756068 G--AAGGTTGCCACTCACTTGTGGGATTTT
1 GAAAAAGATGCCACTGACTTGTGGGCTTTT
* *
1756096 G--AAGGTTGCCACTGACTTGTGGGC-TTT
1 GAAAAAGATGCCACTGACTTGTGGGCTTTT
* *
1756123 GAAAAAGATGCCACTGGCCTGTGGGCTTTT
1 GAAAAAGATGCCACTGACTTGTGGGCTTTT
*
1756153 GAAAAAGATGCCACTGACTTGTGGGTTTTT
1 GAAAAAGATGCCACTGACTTGTGGGCTTTT
* * *
1756183 G--AAGGTTGCCATTGACTTGTGGGC-TTT
1 GAAAAAGATGCCACTGACTTGTGGGCTTTT
* * *
1756210 GGAAAAGATGCCACTAACTTGTGGCCTTTT
1 GAAAAAGATGCCACTGACTTGTGGGCTTTT
1756240 GAA
1 GAA
1756243 GGGTACGGAA
Statistics
Matches: 145, Mismatches: 23, Indels: 14
0.80 0.13 0.08
Matches are distributed among these distances:
27 8 0.06
28 62 0.43
29 38 0.26
30 37 0.26
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.32
Consensus pattern (30 bp):
GAAAAAGATGCCACTGACTTGTGGGCTTTT
Found at i:1756189 original size:87 final size:87
Alignment explanation
Indices: 1756038--1756242 Score: 290
Period size: 87 Copynumber: 2.4 Consensus size: 87
1756028 GACTTAAAAG
* *
1756038 GAAAAAGATGCCA-TGAACTTGTGGGCTTTTG--AAGGTTGCCACTCACTTGTGGGATTTTGAAG
1 GAAAAAGATGCCACTG-ACTTGTGGGCTTTTGAAAAAGATGCCACTCACTTGTGGGATTTTGAAG
1756100 GTTGCCACTGACTTGTGGGCTTT
65 GTTGCCACTGACTTGTGGGCTTT
* * * *
1756123 GAAAAAGATGCCACTGGCCTGTGGGCTTTTGAAAAAGATGCCACTGACTTGTGGGTTTTTGAAGG
1 GAAAAAGATGCCACTGACTTGTGGGCTTTTGAAAAAGATGCCACTCACTTGTGGGATTTTGAAGG
*
1756188 TTGCCATTGACTTGTGGGCTTT
66 TTGCCACTGACTTGTGGGCTTT
* * *
1756210 GGAAAAGATGCCACTAACTTGTGGCCTTTTGAA
1 GAAAAAGATGCCACTGACTTGTGGGCTTTTGAA
1756243 GGGTACGGAA
Statistics
Matches: 105, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
85 26 0.25
86 2 0.02
87 77 0.73
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.32
Consensus pattern (87 bp):
GAAAAAGATGCCACTGACTTGTGGGCTTTTGAAAAAGATGCCACTCACTTGTGGGATTTTGAAGG
TTGCCACTGACTTGTGGGCTTT
Found at i:1756232 original size:57 final size:57
Alignment explanation
Indices: 1756040--1756244 Score: 218
Period size: 57 Copynumber: 3.6 Consensus size: 57
1756030 CTTAAAAGGA
* * *
1756040 AAAAGATGCCA-TGAACTTGTGGGCTTTTGAAGGTTGCCACTCACTTGTGGGATTTTG
1 AAAAGATGCCACT-AACTTGTGGGCTTTTGAAGGTTGCCACTGACTTGTGGGCTTTGG
* * * * * * * *
1756097 -AAGGTTGCCACTGACTTGTGGGC-TTTGAAAAAGATGCCACTGGCCTGTGGGCTTTTGA
1 AAAAGATGCCACTAACTTGTGGGCTTTTG--AAGGTTGCCACTGACTTGTGGGC-TTTGG
* * *
1756155 AAAAGATGCCACTGACTTGTGGGTTTTTGAAGGTTGCCATTGACTTGTGGGCTTTGG
1 AAAAGATGCCACTAACTTGTGGGCTTTTGAAGGTTGCCACTGACTTGTGGGCTTTGG
*
1756212 AAAAGATGCCACTAACTTGTGGCCTTTTGAAGG
1 AAAAGATGCCACTAACTTGTGGGCTTTTGAAGG
1756245 GTACGGAATG
Statistics
Matches: 119, Mismatches: 23, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
55 4 0.03
56 18 0.15
57 52 0.44
58 21 0.18
59 20 0.17
60 4 0.03
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32
Consensus pattern (57 bp):
AAAAGATGCCACTAACTTGTGGGCTTTTGAAGGTTGCCACTGACTTGTGGGCTTTGG
Found at i:1757770 original size:20 final size:20
Alignment explanation
Indices: 1757694--1757768 Score: 114
Period size: 20 Copynumber: 3.8 Consensus size: 20
1757684 TTTAAGGTTT
*
1757694 ATGTATTGTTACAATAAATA
1 ATGTATTGATACAATAAATA
1757714 ATGTATTGATACAATAAATA
1 ATGTATTGATACAATAAATA
*
1757734 ATGTATTGATACAATGAATA
1 ATGTATTGATACAATAAATA
* *
1757754 ATATATCGATACAAT
1 ATGTATTGATACAAT
1757769 GATTAAAATG
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 51 1.00
ACGTcount: A:0.47, C:0.07, G:0.11, T:0.36
Consensus pattern (20 bp):
ATGTATTGATACAATAAATA
Found at i:1757794 original size:40 final size:39
Alignment explanation
Indices: 1757694--1757804 Score: 102
Period size: 40 Copynumber: 2.8 Consensus size: 39
1757684 TTTAAGGTTT
* * *
1757694 ATGTATTGTTACAATAAATAATGTATTGATACAATAAATA
1 ATGTA-TGATACAATAAATAATATATCGATACAATAAATA
*
1757734 ATGTATTGATACAATGAATAATATATCGATACAATGATTAA-A
1 ATGTA-TGATACAATAAATAATATATCGATACAAT-A--AATA
*
1757776 ATGTA-GATATAATAAATAATGA-ATCGATA
1 ATGTATGATACAATAAATAAT-ATATCGATA
1757805 TATTAAGGTT
Statistics
Matches: 61, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
40 51 0.84
41 2 0.03
42 6 0.10
43 2 0.03
ACGTcount: A:0.49, C:0.05, G:0.12, T:0.34
Consensus pattern (39 bp):
ATGTATGATACAATAAATAATATATCGATACAATAAATA
Found at i:1757806 original size:20 final size:20
Alignment explanation
Indices: 1757703--1757804 Score: 77
Period size: 20 Copynumber: 5.1 Consensus size: 20
1757693 TATGTATTGT
* *
1757703 TACAATAAATAATGTATTGA
1 TACAATAAATAATGAATCGA
* *
1757723 TACAATAAATAATGTATTGA
1 TACAATAAATAATGAATCGA
*
1757743 TACAATGAATAAT-ATATCGA
1 TACAATAAATAATGA-ATCGA
*
1757763 TACAATGATTAA-AATG--TAGA
1 TACAAT-A--AATAATGAATCGA
*
1757783 TATAATAAATAATGAATCGA
1 TACAATAAATAATGAATCGA
1757803 TA
1 TA
1757805 TATTAAGGTT
Statistics
Matches: 67, Mismatches: 7, Indels: 16
0.74 0.08 0.18
Matches are distributed among these distances:
17 2 0.03
18 4 0.06
19 1 0.01
20 55 0.82
22 3 0.04
23 2 0.03
ACGTcount: A:0.51, C:0.06, G:0.11, T:0.32
Consensus pattern (20 bp):
TACAATAAATAATGAATCGA
Found at i:1757842 original size:48 final size:46
Alignment explanation
Indices: 1757733--1757880 Score: 114
Period size: 40 Copynumber: 3.3 Consensus size: 46
1757723 TACAATAAAT
* * * *
1757733 AATGTATTGATACAATGAATAATATATCGATACAAT-GA--TT-AA
1 AATGTATTAATACAATGAATAATATATCGATATATTAGAGTTTCAG
* * *
1757775 AATGTA--GATATAATAAATAATGA-ATCGATATATTA-AGGTTTTCTAG
1 AATGTATTAATACAATGAATAAT-ATATCGATATATTAGA-G-TTTC-AG
* *
1757821 AATGTATTAATACAATGAATAATATATTGATATATTTGAGTTTCAG
1 AATGTATTAATACAATGAATAATATATCGATATATTAGAGTTTCAG
*
1757867 AATGTATTGATACA
1 AATGTATTAATACA
1757881 CTTATTAATG
Statistics
Matches: 83, Mismatches: 11, Indels: 20
0.73 0.10 0.18
Matches are distributed among these distances:
40 23 0.28
41 1 0.01
42 6 0.07
44 2 0.02
46 22 0.27
47 5 0.06
48 23 0.28
49 1 0.01
ACGTcount: A:0.44, C:0.05, G:0.14, T:0.37
Consensus pattern (46 bp):
AATGTATTAATACAATGAATAATATATCGATATATTAGAGTTTCAG
Found at i:1760055 original size:11 final size:11
Alignment explanation
Indices: 1760039--1760063 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
1760029 ATAACATTGG
1760039 TGAATATTGAA
1 TGAATATTGAA
1760050 TGAATATTGAA
1 TGAATATTGAA
1760061 TGA
1 TGA
1760064 TTGGAACCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.00, G:0.20, T:0.36
Consensus pattern (11 bp):
TGAATATTGAA
Found at i:1760653 original size:20 final size:19
Alignment explanation
Indices: 1760630--1760698 Score: 75
Period size: 20 Copynumber: 3.4 Consensus size: 19
1760620 TTTGTATCTC
1760630 TACATATCAAAATGTATCGA
1 TACATAT-AAAATGTATCGA
*
1760650 TACAATATATAATGTATCGA
1 TAC-ATATAAAATGTATCGA
* *
1760670 TACATTATATGAATGTATCCA
1 TACA-TATA-AAATGTATCGA
1760691 TACATATA
1 TACATATA
1760699 TCTATTGGTA
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
19 1 0.02
20 25 0.58
21 17 0.40
ACGTcount: A:0.43, C:0.13, G:0.09, T:0.35
Consensus pattern (19 bp):
TACATATAAAATGTATCGA
Found at i:1760782 original size:116 final size:116
Alignment explanation
Indices: 1760578--1760788 Score: 264
Period size: 116 Copynumber: 1.8 Consensus size: 116
1760568 TTATGTATCG
* * * * *
1760578 ATATATCTACTGGCAGTAGCTAAAGAAATCCTAAAACCCTTATTTGTATCTCTACATATCAAAAT
1 ATATATCTACTGGCAATAACTAAAGAAATCATAAAACCCTTATTTGTATCTATACAAATCAAAAT
* * *
1760643 GTATCGATACAATATATAATGTATCGATACATTATATGAATGTATCCATAC
66 ATATCGATACAATACACAATGTATCGATACATTATATGAATGTATCCATAC
* * * * *
1760694 ATATATCTATTGGTAATAACTAAAGAAATCATGAAACCTTTATTTGTAT-TGATACAAATTAAAA
1 ATATATCTACTGGCAATAACTAAAGAAATCATAAAACCCTTATTTGTATCT-ATACAAATCAAAA
*
1760758 TATATC-ATTACAATACACAATGTATTGATAC
65 TATATCGA-TACAATACACAATGTATCGATAC
1760789 CCTGAGGTAC
Statistics
Matches: 79, Mismatches: 14, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
115 2 0.03
116 77 0.97
ACGTcount: A:0.41, C:0.15, G:0.09, T:0.35
Consensus pattern (116 bp):
ATATATCTACTGGCAATAACTAAAGAAATCATAAAACCCTTATTTGTATCTATACAAATCAAAAT
ATATCGATACAATACACAATGTATCGATACATTATATGAATGTATCCATAC
Found at i:1761268 original size:47 final size:46
Alignment explanation
Indices: 1761209--1761355 Score: 231
Period size: 47 Copynumber: 3.1 Consensus size: 46
1761199 TCTTAAGGGG
* *
1761209 ATTGAAAGGTTATACCTTAGCCCTAAAGGTAACAAATTCATTATAGA
1 ATTGTAAGGTTATACCTTAGCCTTAAAGGTAA-AAATTCATTATAGA
1761256 ATTGTAAGGTTATACCTTAGCCTTAAAGGTGAAAAATTCATTATAGA
1 ATTGTAAGGTTATACCTTAGCCTTAAAGGT-AAAAATTCATTATAGA
**
1761303 ATTGTAAGGTTATACCTTAGCCTTAAAGGTAATAAATTCATTAGCGA
1 ATTGTAAGGTTATACCTTAGCCTTAAAGGTAA-AAATTCATTATAGA
1761350 ATTGTA
1 ATTGTA
1761356 GGAATCACCA
Statistics
Matches: 94, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
46 2 0.02
47 90 0.96
48 2 0.02
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.33
Consensus pattern (46 bp):
ATTGTAAGGTTATACCTTAGCCTTAAAGGTAAAAATTCATTATAGA
Found at i:1762997 original size:52 final size:52
Alignment explanation
Indices: 1762900--1763024 Score: 128
Period size: 52 Copynumber: 2.4 Consensus size: 52
1762890 TTTTGAAAAA
* * ** *
1762900 AAATGTATCAACACATTTTTTATTATATTGATAAATTTTAGGTTTTTTA-CC
1 AAATGTATCAACACATTTTTCATTATATCGATAAATTGGAGGTTTTTGATCC
* * *
1762951 TAAATGTATCGATACATTTTTCATTATATCGATACATTCGGA-GTTTTTGATCC
1 -AAATGTATCAACACATTTTTCATTATATCGATAAATT-GGAGGTTTTTGATCC
* *
1763004 AAATGTATCCACACATCTTTC
1 AAATGTATCAACACATTTTTC
1763025 GATGTGTTGA
Statistics
Matches: 60, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
52 57 0.95
53 3 0.05
ACGTcount: A:0.31, C:0.15, G:0.10, T:0.44
Consensus pattern (52 bp):
AAATGTATCAACACATTTTTCATTATATCGATAAATTGGAGGTTTTTGATCC
Found at i:1764152 original size:66 final size:66
Alignment explanation
Indices: 1764075--1764206 Score: 237
Period size: 66 Copynumber: 2.0 Consensus size: 66
1764065 TTTCAGCATA
* * *
1764075 TTAGTTGTTGTTGGAACATGTTTATATCATTTTCCTTGTCATGATCATAATGTTGTTTATCTAGC
1 TTAGTTGTTGTTGGAACATGTTTATATCATTTTCCTTATCATGATCATAATGTTATTCATCTAGC
1764140 T
66 T
1764141 TTAGTTGTTGTTGGAACATGTTTATATCATTTTCCTTATCATGATCATAATGTTATTCATCTAGC
1 TTAGTTGTTGTTGGAACATGTTTATATCATTTTCCTTATCATGATCATAATGTTATTCATCTAGC
1764206 T
66 T
1764207 AATCTGTGTA
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
66 63 1.00
ACGTcount: A:0.23, C:0.13, G:0.15, T:0.49
Consensus pattern (66 bp):
TTAGTTGTTGTTGGAACATGTTTATATCATTTTCCTTATCATGATCATAATGTTATTCATCTAGC
T
Found at i:1767767 original size:13 final size:13
Alignment explanation
Indices: 1767749--1767775 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1767739 ACATCTTGCT
1767749 TTGTATCGATACA
1 TTGTATCGATACA
1767762 TTGTATCGATACA
1 TTGTATCGATACA
1767775 T
1 T
1767776 GCTCACTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1767807 original size:20 final size:19
Alignment explanation
Indices: 1767761--1767815 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 19
1767751 GTATCGATAC
*
1767761 ATTGTATCGATACATGCTC
1 ATTGTATCGATACATGCTA
*
1767780 ACTGTATCGATACATAGAC-A
1 ATTGTATCGATACAT-G-CTA
1767800 ATTGTATCGATACATG
1 ATTGTATCGATACATG
1767816 AAATTGGCAG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
19 15 0.48
20 15 0.48
21 1 0.03
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Consensus pattern (19 bp):
ATTGTATCGATACATGCTA
Found at i:1774079 original size:13 final size:13
Alignment explanation
Indices: 1774061--1774086 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1774051 ACAACATTCT
1774061 TTGTATCGATACA
1 TTGTATCGATACA
1774074 TTGTATCGATACA
1 TTGTATCGATACA
1774087 GTAGGTACTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1774253 original size:20 final size:22
Alignment explanation
Indices: 1774209--1774255 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
1774199 AATTTTCCAT
1774209 AAAT-TTTCACTTTTTCACTTCA
1 AAATCTTTCACTTTTTCAC-TCA
1774231 AAATCTTTCA-TTTTTCA-TCA
1 AAATCTTTCACTTTTTCACTCA
1774251 AAATC
1 AAATC
1774256 ATCAACAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
20 8 0.33
22 11 0.46
23 5 0.21
ACGTcount: A:0.32, C:0.21, G:0.00, T:0.47
Consensus pattern (22 bp):
AAATCTTTCACTTTTTCACTCA
Found at i:1776700 original size:13 final size:13
Alignment explanation
Indices: 1776682--1776707 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1776672 TACACCAAGT
1776682 ATGTATCGATACA
1 ATGTATCGATACA
1776695 ATGTATCGATACA
1 ATGTATCGATACA
1776708 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1776705 original size:32 final size:33
Alignment explanation
Indices: 1776664--1776727 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
1776654 TAGCCAAACT
* **
1776664 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
1776696 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
1776728 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:1778963 original size:21 final size:21
Alignment explanation
Indices: 1778930--1778979 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
1778920 TTGCAAGTTG
*
1778930 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
1778952 AAATAATG-AGTTAGCTAAGAA
1 AAATAAAGAAGTTAGCTAAG-A
1778973 AAATAAA
1 AAATAAA
1778980 AACTTGCATA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 16 0.67
22 7 0.29
ACGTcount: A:0.56, C:0.04, G:0.18, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:1780794 original size:15 final size:15
Alignment explanation
Indices: 1780774--1780804 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1780764 TAAAAATGTC
*
1780774 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
1780789 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
1780804 C
1 C
1780805 CACAAGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:1783058 original size:20 final size:20
Alignment explanation
Indices: 1783015--1783060 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
1783005 AAATCTTTTG
1783015 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
1783036 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
1783056 CAAAA
1 CAAAA
1783061 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:1785451 original size:13 final size:13
Alignment explanation
Indices: 1785433--1785458 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1785423 TACACCAAGT
1785433 ATGTATCGATACA
1 ATGTATCGATACA
1785446 ATGTATCGATACA
1 ATGTATCGATACA
1785459 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Done.