genome.fa.s2702.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2702
Parameters: 2 7 7 80 10 50 1000
Length:  121506

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1975--2019	22	2.1	21	84	8	56	26	17	4	51	1.65
4229--4280	19	2.7	20	87	6	79	28	13	15	42	1.85
6269--6294	13	2.0	13	100	0	52	30	15	15	38	1.88
6416--6462	22	2.2	22	85	14	64	31	21	0	46	1.51
7460--7485	13	2.0	13	100	0	52	38	15	15	30	1.88
7943--8009	37	1.9	35	88	11	102	32	11	25	29	1.92
11212--11236	13	1.9	13	100	0	50	36	16	16	32	1.90
13018--13043	13	2.0	13	100	0	52	38	15	15	30	1.88
13000--13063	32	2.0	33	87	3	94	40	17	14	28	1.88
13501--13567	37	1.9	35	88	11	102	32	11	25	29	1.92
15497--15550	20	2.8	20	88	2	83	31	9	18	40	1.82
18727--18787	18	3.3	18	67	13	52	47	18	16	18	1.83
18721--18796	37	2.1	37	89	0	116	43	18	15	22	1.88
20710--20977	80	3.4	78	81	6	288	27	24	14	33	1.94
20831--21097	130	2.0	132	82	7	321	29	23	12	33	1.92
26567--26622	19	2.9	19	91	2	94	30	16	14	39	1.88
26648--26696	20	2.5	20	73	6	55	42	12	18	26	1.85
35422--35511	20	4.6	20	76	14	80	33	16	12	37	1.86
38418--38715	88	3.4	88	79	8	277	29	32	16	22	1.95
38418--38745	58	5.6	58	82	5	324	28	31	16	23	1.96
38418--38745	30	11.2	30	81	5	300	28	31	16	23	1.96
41994--42216	79	2.8	79	85	2	304	27	22	11	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48795--48842	22	2.3	22	89	7	73	43	18	4	33	1.69
56438--56493	21	2.7	21	100	0	112	44	10	17	26	1.82
56532--56557	13	2.0	13	100	0	52	38	15	15	30	1.88
56514--56577	32	2.0	33	87	3	94	40	17	14	28	1.88
58765--58814	21	2.3	21	80	10	57	56	4	18	22	1.58
62712--62737	13	2.0	13	100	0	52	30	15	15	38	1.88
62863--62902	22	2.0	20	85	14	55	25	20	5	50	1.68
65274--65299	13	2.0	13	100	0	52	38	15	15	30	1.88
65256--65319	32	2.0	33	87	3	94	40	17	14	28	1.88
66808--66865	13	4.9	13	68	23	56	31	17	15	36	1.91
66788--66885	33	3.0	33	92	5	146	31	18	14	35	1.91
66818--66886	20	3.8	20	73	26	80	31	18	14	34	1.91
66915--66987	20	3.7	19	83	7	76	39	17	13	28	1.88
66919--66968	19	2.5	20	87	3	66	40	18	12	30	1.86
71505--71552	24	2.0	24	87	0	69	22	6	14	56	1.61
74478--74522	21	2.1	21	84	8	56	53	4	20	22	1.63
78502--78526	13	1.9	13	100	0	50	36	16	16	32	1.90
78567--78633	33	2.0	33	88	0	98	40	14	11	32	1.83
78589--78613	13	1.9	13	100	0	50	32	16	16	36	1.90
79507--79976	49	9.8	49	86	6	624	31	17	25	24	1.97
79441--79976	98	5.5	98	84	7	666	32	16	25	25	1.96
79976--80326	30	11.8	29	75	12	205	24	17	29	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80185--80326	28	5.0	28	81	6	124	23	17	30	28	1.97
80221--80332	28	4.0	28	82	4	127	19	18	30	31	1.96
81730--81815	1	86.0	1	76	0	73	0	2	10	87	0.64
81730--81813	8	10.9	8	81	8	95	0	2	10	86	0.65
91506--91532	10	2.7	10	100	0	54	77	22	0	0	0.76
95675--95823	52	2.9	51	88	4	226	30	17	18	33	1.94
95812--95836	13	1.9	13	100	0	50	36	16	16	32	1.90
95877--95943	33	2.0	33	88	0	98	40	14	11	32	1.83
95899--95923	13	1.9	13	100	0	50	32	16	16	36	1.90
99336--99361	13	2.0	13	100	0	52	30	15	15	38	1.88
99482--99527	21	2.2	20	81	11	58	32	19	4	43	1.71
101905--101930	13	2.0	13	100	0	52	38	15	15	30	1.88
104720--104774	19	2.8	19	83	5	65	41	12	14	30	1.83
104717--104773	21	2.8	21	78	5	73	40	12	14	33	1.83
104829--104941	51	2.3	49	83	6	129	30	15	13	41	1.85
112854--112886	15	2.2	16	89	10	52	48	12	12	27	1.76

Tables:   1

The End!