Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold271
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 492225
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.35
File 1 of 4
Found at i:1752 original size:27 final size:27
Alignment explanation
Indices: 1677--1755 Score: 96
Period size: 27 Copynumber: 3.1 Consensus size: 27
1667 TAAGTGTAAT
* *
1677 TAAATATAATTATTAAAAT-TGCTTAA
1 TAAATATTATTATTAAAATATGTTTAA
1703 T--AT-TTATTATT-AAATATGATTTAA
1 TAAATATTATTATTAAAATATG-TTTAA
1727 TAAATATTATTATTAAAATATGTTTAA
1 TAAATATTATTATTAAAATATGTTTAA
1754 TA
1 TA
1756 TATTAGTAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 11
0.78 0.03 0.19
Matches are distributed among these distances:
22 4 0.09
23 9 0.20
24 7 0.16
26 3 0.07
27 15 0.33
28 7 0.16
ACGTcount: A:0.47, C:0.01, G:0.04, T:0.48
Consensus pattern (27 bp):
TAAATATTATTATTAAAATATGTTTAA
Found at i:1766 original size:35 final size:36
Alignment explanation
Indices: 1727--1829 Score: 103
Period size: 35 Copynumber: 3.0 Consensus size: 36
1717 TATGATTTAA
** *
1727 TAAATATTATTATTAAA-ATATGTTTAATATATTAG
1 TAAATATTATTATTAAATATATCATTAAAATATTAG
*
1762 TAAATA-TAATATTAAATATATCATTAAAATATTAG
1 TAAATATTATTATTAAATATATCATTAAAATATTAG
*
1797 --AATA-TATTATTAAATAT-T-ATTTAAATCATTAG
1 TAAATATTATTATTAAATATATCATTAAAAT-ATTAG
1829 T
1 T
1830 TTTAATATAT
Statistics
Matches: 59, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
31 7 0.12
32 6 0.10
33 16 0.27
34 9 0.15
35 21 0.36
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.46
Consensus pattern (36 bp):
TAAATATTATTATTAAATATATCATTAAAATATTAG
Found at i:1769 original size:12 final size:12
Alignment explanation
Indices: 1675--1813 Score: 96
Period size: 12 Copynumber: 11.8 Consensus size: 12
1665 TTTAAGTGTA
1675 ATTAAATATAATT
1 ATTAAATAT-ATT
*
1688 ATTAAA-AT-TG
1 ATTAAATATATT
* *
1698 CTTAATATTTATT
1 ATTAA-ATATATT
1711 ATTAAATATGATTT
1 ATTAAATAT-A-TT
*
1725 AATAAATATTATT
1 ATTAAATA-TATT
1738 ATTAAA-ATATGT
1 ATTAAATATAT-T
1750 -TT-AATATATT
1 ATTAAATATATT
* *
1760 AGTAAATATAAT
1 ATTAAATATATT
*
1772 ATTAAATATATC
1 ATTAAATATATT
1784 ATTAAA-ATATT
1 ATTAAATATATT
*
1795 A--GAATATATT
1 ATTAAATATATT
1805 ATTAAATAT
1 ATTAAATAT
1814 TATTTAAATC
Statistics
Matches: 97, Mismatches: 16, Indels: 27
0.69 0.11 0.19
Matches are distributed among these distances:
9 2 0.02
10 14 0.14
11 16 0.16
12 35 0.36
13 19 0.20
14 10 0.10
15 1 0.01
ACGTcount: A:0.49, C:0.01, G:0.04, T:0.46
Consensus pattern (12 bp):
ATTAAATATATT
Found at i:1794 original size:20 final size:20
Alignment explanation
Indices: 1769--1815 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
1759 TAGTAAATAT
1769 AATATTA-AATATATCATTAA
1 AATATTAGAATATATCATT-A
*
1789 AATATTAGAATATATTATTA
1 AATATTAGAATATATCATTA
1809 AATATTA
1 AATATTA
1816 TTTAAATCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 15 0.60
21 10 0.40
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (20 bp):
AATATTAGAATATATCATTA
Found at i:1817 original size:13 final size:13
Alignment explanation
Indices: 1701--1877 Score: 77
Period size: 12 Copynumber: 14.5 Consensus size: 13
1691 AAAATTGCTT
1701 AATATTTATTATTA
1 AATA-TTATTATTA
* *
1715 AATATGATTTAATA
1 AATATTA-TTATTA
1729 AATATTATTATTA
1 AATATTATTATTA
1742 AA-A-TATGT-TT-
1 AATATTAT-TATTA
*
1752 AATA-TATTAGTA
1 AATATTATTATTA
*
1764 AATA-TAATATTA
1 AATATTATTATTA
*
1776 AATA-TATCATTA
1 AATATTATTATTA
*
1788 AA-A-TATTA--G
1 AATATTATTATTA
1797 AATA-TATTATTA
1 AATATTATTATTA
1809 AATATTA-T-TTA
1 AATATTATTATTA
1820 AATCATTAGTT-TT-
1 AAT-ATTA-TTATTA
* *
1833 AATA-TATTGTAA
1 AATATTATTATTA
*
1845 AATATTA-AATTAA
1 AATATTATTATT-A
1858 AATATT-TTATTAA
1 AATATTATTATT-A
1871 AATATTA
1 AATATTA
1878 ATTTATATTA
Statistics
Matches: 128, Mismatches: 17, Indels: 36
0.71 0.09 0.20
Matches are distributed among these distances:
9 2 0.02
10 11 0.09
11 24 0.19
12 39 0.30
13 34 0.27
14 18 0.14
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.47
Consensus pattern (13 bp):
AATATTATTATTA
Found at i:1904 original size:82 final size:81
Alignment explanation
Indices: 1749--1909 Score: 195
Period size: 82 Copynumber: 2.0 Consensus size: 81
1739 TTAAAATATG
1749 TTTAATATATTAGTAAATATAATATTAAATATATCATTAAAATATTAGAATATATTATTAAATAT
1 TTTAATATATTAGTAAATATAATATTAAATATATCATTAAAATATTAGAATATATTATTAAATAT
**
1814 TATTTAAATCATTAGT
66 TAAATAAATCATTAGT
* * *
1830 TTTAATATATT-GTAAAATATTAA-ATTAAAATATTTTATTAAAATATTA-ATTTATATTATTAA
1 TTTAATATATTAGT-AAATA-TAATATT-AAATATATCATTAAAATATTAGA-ATATATTATTAA
*
1892 CAT-TTAAATAAATTATTA
62 -ATATTAAATAAATCATTA
1910 AAATATAAAT
Statistics
Matches: 69, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
80 2 0.03
81 20 0.29
82 45 0.65
83 2 0.03
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.47
Consensus pattern (81 bp):
TTTAATATATTAGTAAATATAATATTAAATATATCATTAAAATATTAGAATATATTATTAAATAT
TAAATAAATCATTAGT
Found at i:1926 original size:19 final size:19
Alignment explanation
Indices: 1847--1928 Score: 76
Period size: 19 Copynumber: 4.3 Consensus size: 19
1837 TATTGTAAAA
* *
1847 TATTAAATTA-AAATATTT
1 TATTAAAATATAAATATAT
*
1865 TATTAAAATATTAATTTATAT
1 TATTAAAATA-TAA-ATATAT
* * *
1886 TATTAACATTTAAATAAAT
1 TATTAAAATATAAATATAT
*
1905 TATTAAAATATAAATATGT
1 TATTAAAATATAAATATAT
1924 TATTA
1 TATTA
1929 TGATATTATT
Statistics
Matches: 50, Mismatches: 11, Indels: 5
0.76 0.17 0.08
Matches are distributed among these distances:
18 9 0.18
19 24 0.48
20 5 0.10
21 12 0.24
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.48
Consensus pattern (19 bp):
TATTAAAATATAAATATAT
Found at i:1965 original size:30 final size:30
Alignment explanation
Indices: 1903--1970 Score: 73
Period size: 30 Copynumber: 2.2 Consensus size: 30
1893 ATTTAAATAA
* * **
1903 ATTATTAAAATATAAATATGTTATTATGAT
1 ATTATTAAAATATAAATATATCATTAAAAT
* *
1933 ATTATTAAAATTTAAATGTATCATTAAAAT
1 ATTATTAAAATATAAATATATCATTAAAAT
1963 ATTGATTA
1 ATT-ATTA
1971 CTTAGATCAA
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
30 27 0.87
31 4 0.13
ACGTcount: A:0.47, C:0.01, G:0.06, T:0.46
Consensus pattern (30 bp):
ATTATTAAAATATAAATATATCATTAAAAT
Found at i:4052 original size:18 final size:19
Alignment explanation
Indices: 4029--4064 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
4019 ATAAAAAGAA
4029 TTAATA-TAATTTTTTAAC
1 TTAATATTAATTTTTTAAC
*
4047 TTAATATTACTTTTTTAA
1 TTAATATTAATTTTTTAA
4065 TAATTTGAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (19 bp):
TTAATATTAATTTTTTAAC
Found at i:10241 original size:2 final size:2
Alignment explanation
Indices: 10229--10269 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
10219 CATGACTTTT
*
10229 AG AG GG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
10270 CCCCAAACTA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
AG
Found at i:15781 original size:17 final size:17
Alignment explanation
Indices: 15759--15804 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 17
15749 AAGTCAGAAA
15759 ATAAATATATATTGA-AT
1 ATAAATATATATT-ATAT
*
15776 ATAAATATAAATTATAT
1 ATAAATATATATTATAT
*
15793 ATATATATATAT
1 ATAAATATATAT
15805 ATTTAGAGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 1 0.04
17 24 0.96
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.43
Consensus pattern (17 bp):
ATAAATATATATTATAT
Found at i:18731 original size:7 final size:7
Alignment explanation
Indices: 18719--18745 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
18709 TTTCTTTCGT
18719 TTTATTA
1 TTTATTA
18726 TTTATTA
1 TTTATTA
18733 TTTATTA
1 TTTATTA
18740 TTTATT
1 TTTATT
18746 TACTGTTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (7 bp):
TTTATTA
Found at i:19098 original size:15 final size:16
Alignment explanation
Indices: 19078--19107 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
19068 TTATCTATTA
19078 TTTTTA-ATTTAAAAT
1 TTTTTATATTTAAAAT
19093 TTTTTATATTTAAAA
1 TTTTTATATTTAAAA
19108 ATTAATTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (16 bp):
TTTTTATATTTAAAAT
Found at i:19644 original size:2 final size:2
Alignment explanation
Indices: 19637--19661 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
19627 TTTTAAATCT
19637 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
19662 CTAAAGTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:19931 original size:322 final size:323
Alignment explanation
Indices: 19338--19982 Score: 1033
Period size: 322 Copynumber: 2.0 Consensus size: 323
19328 CCGCAATTAA
* * * *
19338 CTAAAATAATTACATTCAATCTTTATTCGGTTATTTTCATCTGTTTTACTATCTGAATTTAATTT
1 CTAAAATAATTACATTCAACCTTTATTCAGTTATTTTCATCTGTTTTACGATCTGAATCTAATTT
* * * **
19403 TATTTTAGAATATATAATTATCATTCTTAAGAGTACGTTCACATGGACTTGAATTTTAACTTTTT
66 TATTTTAGAATATATAATTACCATTCTTAAGAGTACGCTCACATGAACTTGAAGCTTAACTTTTT
* * *
19468 TTTCATAGTCATGAATGTGCTTTACGACTTATACTATAACTATTTAAATAAATCATGTTTATATT
131 TTTCATAGTCATGAATATGCTTTACGACGTATACTATAACTATTGAAATAAATCATGTTTATATT
*
19533 TATAATTAAAGAATTACTTTCATAAAAAATAATTAATTGAACAATTGCTAAAGTTCAGGTCAAGA
196 TATAATTAAAGAATTACTTTCATAAAAAATAATTAATTGAACAATTGCTAAAGCTCAGGTCAAGA
* **
19598 TGGATTGTTTGTCTTTAAGTATGATTATCTTTTAAATCTTATATATATATATATATATATATAT
261 TGGATTGTTTGTC-TTAAGTATGATAATCTACTAAATCTTATATATATATATATATATATATAT
* * * *
19662 CTAAAGTAATTACATTCGACCTTTATTCAGTTATTTTCATTTGTTTTACGATTTGAATCTAATTT
1 CTAAAATAATTACATTCAACCTTTATTCAGTTATTTTCATCTGTTTTACGATCTGAATCTAATTT
*
19727 TATTTTAGAATATATAATTACCATTCTTAAGAGTACGCTCACATGAACTTGAAGCTTGA-TTTTT
66 TATTTTAGAATATATAATTACCATTCTTAAGAGTACGCTCACATGAACTTGAAGCTTAACTTTTT
* * *
19791 TTT-GTAGTCATGAATATGCTTTACGACGTATACTATAACTATTGACATAAATTATGTTTATATT
131 TTTCATAGTCATGAATATGCTTTACGACGTATACTATAACTATTGAAATAAATCATGTTTATATT
* *
19855 TATAATTAAAGATTTACTTTCATAAAAAATAATTAATTGAACAATTGCTAAAGCTCATGTCAAGA
196 TATAATTAAAGAATTACTTTCATAAAAAATAATTAATTGAACAATTGCTAAAGCTCAGGTCAAGA
19920 TGGATTGTTTGTCTTAAGTATGATAATCTACTAAATCTTATATATATATATATATATATATAT
261 TGGATTGTTTGTCTTAAGTATGATAATCTACTAAATCTTATATATATATATATATATATATAT
19983 ATATATATAT
Statistics
Matches: 295, Mismatches: 26, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
321 47 0.16
322 130 0.44
323 8 0.03
324 110 0.37
ACGTcount: A:0.35, C:0.11, G:0.10, T:0.44
Consensus pattern (323 bp):
CTAAAATAATTACATTCAACCTTTATTCAGTTATTTTCATCTGTTTTACGATCTGAATCTAATTT
TATTTTAGAATATATAATTACCATTCTTAAGAGTACGCTCACATGAACTTGAAGCTTAACTTTTT
TTTCATAGTCATGAATATGCTTTACGACGTATACTATAACTATTGAAATAAATCATGTTTATATT
TATAATTAAAGAATTACTTTCATAAAAAATAATTAATTGAACAATTGCTAAAGCTCAGGTCAAGA
TGGATTGTTTGTCTTAAGTATGATAATCTACTAAATCTTATATATATATATATATATATATAT
Found at i:19965 original size:2 final size:2
Alignment explanation
Indices: 19958--19994 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
19948 TACTAAATCT
19958 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
19995 CAAACTAGAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:20434 original size:14 final size:14
Alignment explanation
Indices: 20389--20437 Score: 55
Period size: 14 Copynumber: 3.6 Consensus size: 14
20379 TAGACATAAT
*
20389 AAATTAACTATTTA
1 AAATTAAATATTTA
* *
20403 AAA-TAAATAATAA
1 AAATTAAATATTTA
*
20416 AAATTAATTATTTA
1 AAATTAAATATTTA
20430 AAATTAAA
1 AAATTAAA
20438 ATTAAATTTA
Statistics
Matches: 27, Mismatches: 7, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
13 10 0.37
14 17 0.63
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (14 bp):
AAATTAAATATTTA
Found at i:20875 original size:2 final size:2
Alignment explanation
Indices: 20868--20898 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
20858 AGATCGGGAA
20868 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
20899 AAGGATTTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:25221 original size:23 final size:23
Alignment explanation
Indices: 25195--25241 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
25185 TATTTTGATC
25195 ATTTAATTA-TGAAAATTTAAATA
1 ATTTAATTACT-AAAATTTAAATA
* *
25218 ATTTGATTACTAATATTTAAATA
1 ATTTAATTACTAAAATTTAAATA
25241 A
1 A
25242 AATATGAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 20 0.95
24 1 0.05
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (23 bp):
ATTTAATTACTAAAATTTAAATA
Found at i:31935 original size:22 final size:23
Alignment explanation
Indices: 31884--31935 Score: 65
Period size: 22 Copynumber: 2.3 Consensus size: 23
31874 AAGTTTTAAA
*
31884 TTCT-TTTTTCCTCTTGACATTC
1 TTCTCTTTTTCCTCTCGACATTC
31906 TT-TCCTTTTT-CTCTCGACATTC
1 TTCT-CTTTTTCCTCTCGACATTC
31928 TTCTCTTT
1 TTCTCTTT
31936 CTCTTTTACT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
21 1 0.04
22 19 0.73
23 6 0.23
ACGTcount: A:0.08, C:0.29, G:0.04, T:0.60
Consensus pattern (23 bp):
TTCTCTTTTTCCTCTCGACATTC
Found at i:34578 original size:24 final size:21
Alignment explanation
Indices: 34551--34599 Score: 62
Period size: 24 Copynumber: 2.2 Consensus size: 21
34541 CGACTATTAA
34551 TAAATATATTTAATTATATATTTT
1 TAAATATATTT-ATT-TA-ATTTT
*
34575 TAAATATGTTTATTTAATTTT
1 TAAATATATTTATTTAATTTT
34596 TAAA
1 TAAA
34600 AATAAATACA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 9 0.38
22 2 0.08
23 3 0.12
24 10 0.42
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (21 bp):
TAAATATATTTATTTAATTTT
Found at i:37120 original size:20 final size:20
Alignment explanation
Indices: 37092--37163 Score: 72
Period size: 20 Copynumber: 3.6 Consensus size: 20
37082 TACCCAGATG
*
37092 TATCAATACATTTTTCAATA
1 TATCGATACATTTTTCAATA
* * * *
37112 TATCGATACATGTATGAATG
1 TATCGATACATTTTTCAATA
* * *
37132 TATCGATATATTCTACAATA
1 TATCGATACATTTTTCAATA
37152 TATCGATACATT
1 TATCGATACATT
37164 ATGTCTTTTC
Statistics
Matches: 39, Mismatches: 13, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.38, C:0.14, G:0.08, T:0.40
Consensus pattern (20 bp):
TATCGATACATTTTTCAATA
Found at i:37151 original size:40 final size:39
Alignment explanation
Indices: 37089--37166 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
37079 TTTTACCCAG
* *
37089 ATGTATCAATACATTTTTCAATATATCGATACATGTATGA
1 ATGTATCAATACATTCTACAATATATCGATACAT-TATGA
* *
37129 ATGTATCGATATATTCTACAATATATCGATACATTATG
1 ATGTATCAATACATTCTACAATATATCGATACATTATG
37167 TCTTTTCAAG
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.37, C:0.13, G:0.10, T:0.40
Consensus pattern (39 bp):
ATGTATCAATACATTCTACAATATATCGATACATTATGA
Found at i:44197 original size:16 final size:16
Alignment explanation
Indices: 44178--44225 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
44168 AAAAAAGGTC
44178 AAAA-GCAAAAGCACAA
1 AAAATGCAAAAGCA-AA
44194 AAAATG-AAAAG-AAA
1 AAAATGCAAAAGCAAA
44208 AAAAGTGCAAAAGCAAA
1 AAAA-TGCAAAAGCAAA
44225 A
1 A
44226 TAAAAAAGGG
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
14 6 0.21
15 3 0.11
16 14 0.50
17 5 0.18
ACGTcount: A:0.71, C:0.10, G:0.15, T:0.04
Consensus pattern (16 bp):
AAAATGCAAAAGCAAA
Found at i:45483 original size:17 final size:18
Alignment explanation
Indices: 45448--45484 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
45438 TTATGTCAAA
45448 TCCCTAGATAGCTTGACC
1 TCCCTAGATAGCTTGACC
45466 TCCCTAG-TA-CTGTGACC
1 TCCCTAGATAGCT-TGACC
45483 TC
1 TC
45485 TTCAAAGTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 2 0.11
17 9 0.50
18 7 0.39
ACGTcount: A:0.19, C:0.35, G:0.16, T:0.30
Consensus pattern (18 bp):
TCCCTAGATAGCTTGACC
Found at i:45631 original size:83 final size:83
Alignment explanation
Indices: 45512--46061 Score: 858
Period size: 83 Copynumber: 6.7 Consensus size: 83
45502 AGTGGCATTT
* *
45512 CTTTCTAAAGTCCACAACTCCGTGGCACTCTCTTAAAGTCCACAACTCCGTGGCACCCTTTTAAG
1 CTTT-TAAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAG
45577 TCCACAACTCCGTGGCACC
65 TCCACAACTCCGTGGCACC
*
45596 CTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCGCAACTCCGTGGCACCCTTTTAAGT
1 CTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAGT
*
45661 CCACAACTCCGTGGCACT
66 CCACAACTCCGTGGCACC
* *
45679 CTTTTAAAGTCCACAACTCCGTGACACCCTTTTAAAGTCCACAACTCCATGGCACCCTTTTAAAG
1 CTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACCCTTTT-AAG
45744 TCCACAACTCCGTGGCACC
65 TCCACAACTCCGTGGCACC
* ** *
45763 CTTTT-AAGTCCACAACTCCGTAGCATTCTTTTAAAGTCCACAACTCCGTGGCACCCTTCTAAGT
1 CTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAGT
* *
45827 CCATAACTCTGTGGCACC
66 CCACAACTCCGTGGCACC
* *
45845 CTTTT-AAGTCCACAACTCCGTGGCACTCTTTTAAAGTCCACAACTCCGTGGTACCCTTTTAAGT
1 CTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAGT
* * *
45909 CCAAAACTTCGTGGCACT
66 CCACAACTCCGTGGCACC
*
45927 CTTTTAAAGTCCACAACTCCATGGCACCCTTTT-AAGTCCACAACTCCGTGGCACCCTTTTAAAG
1 CTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACCCTTTT-AAG
*
45991 TCCACAACTCCGTGGCATC
65 TCCACAACTCCGTGGCACC
*
46010 CTTTT-AAGTCCACAACTCCGTGGCATCCTTTT-AAGTCCACAACTCCGTGGCA
1 CTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCA
46062 ACACCCATTT
Statistics
Matches: 430, Mismatches: 33, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
82 170 0.40
83 230 0.53
84 30 0.07
ACGTcount: A:0.25, C:0.34, G:0.14, T:0.27
Consensus pattern (83 bp):
CTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAGT
CCACAACTCCGTGGCACC
Found at i:46184 original size:96 final size:96
Alignment explanation
Indices: 46064--46883 Score: 408
Period size: 96 Copynumber: 9.2 Consensus size: 96
46054 CCGTGGCAAC
*
46064 ACCCATTTCAAAGCCCACACAAGTTGGTGGCAACCTATTTCGAAGCCCACACAAGTTGGTGGCAA
1 ACCCATTTCAAAGCCCACACAAGTTGGTGGCAACCTATTTCAAAGCCCACACAAGTTGGTGGCAA
* *
46129 CTCATTTGAAAGCCCACACAAGTTAGTGGCA
66 CCCATTTCAAAGCCCACACAAGTTAGTGGCA
* * * * *
46160 ACCCATTTCAAAGCCCACATAAGTTGGTGGCAACTTATTTCAAAACCCACGCAAGTTAGTGGCAA
1 ACCCATTTCAAAGCCCACACAAGTTGGTGGCAACCTATTTCAAAGCCCACACAAGTTGGTGGCAA
* * *
46225 CCCATTTTAAAGCTCACACAAGTTGGTGGCA
66 CCCATTTCAAAGCCCACACAAGTTAGTGGCA
** * * *
46256 AGTCATTTGAAAGCCCACACAAGTCGGTGGCAA-CTCATTTCAAAGCCCACACAAGTCGGTGGCA
1 ACCCATTTCAAAGCCCACACAAGTTGGTGGCAACCT-ATTTCAAAGCCCACACAAGTTGGTGGCA
* **
46320 ACCCATTTCAAAG-CC-CATAAGTCGGTGGC-
65 ACCCATTTCAAAGCCCACACAAGTTAGTGGCA
* * *** * ** *
46349 A-TCTTTTCAAAG-CC-CACAAGTCATTGGC-ACC-CTTTCAAAGCCCACA-AA-TCAGTGG-TA
1 ACCCATTTCAAAGCCCACACAAGTTGGTGGCAACCTATTTCAAAGCCCACACAAGTTGGTGGCAA
* *
46406 TCC-TTTCCAAG-CC-CACAAGTTAGTGGCA
66 CCCATTTCAAAGCCCACACAAGTTAGTGGCA
* * ** * *
46434 A--CTTTTCAAAGCCCACGC--GTCAGTGGCAA-CT-TTTCAAAG-CC-CACGAGTTAGTGGC-A
1 ACCCATTTCAAAGCCCACACAAGTTGGTGGCAACCTATTTCAAAGCCCACACAAGTTGGTGGCAA
* * * *
46490 TCC-TTCCAAAG-TC-CACAAGTCAGTGGC-
66 CCCATTTCAAAGCCCACACAAGTTAGTGGCA
* ** * ** **
46517 ATCC-TTTCAAAG-CC-CACAAGTCAGTGGTATTCT-TTTCAAAG-CC-CACAAGTCAGTGGC-A
1 ACCCATTTCAAAGCCCACACAAGTTGGTGGCAACCTATTTCAAAGCCCACACAAGTTGGTGGCAA
* *
46575 -TCATTCTCAAAG-CC-CACAAGTCAGTGGC-
66 CCCATT-TCAAAGCCCACACAAGTTAGTGGCA
* * * * *
46603 A-TCATTCTCAAAGCCCACACAAATTAGTGGC-ACAT-TTTCAAAGCCCACACAAGTCGGTGGC-
1 ACCCATT-TCAAAGCCCACACAAGTTGGTGGCAACCTATTTCAAAGCCCACACAAGTTGGTGGCA
** * *
46664 A-TTATTTCAAAGCCCACACGAG-TCGATGGCA
65 ACCCATTTCAAAGCCCACACAAGTTAG-TGGCA
* * * ** * * *
46695 ACTCTTTTTAAAG-CC-CACAAGTCAGTGGC-ACC-CTTTCGAAG-CC-CACAAGTTAGTGGC-A
1 ACCCATTTCAAAGCCCACACAAGTTGGTGGCAACCTATTTCAAAGCCCACACAAGTTGGTGGCAA
* *
46753 CCC-TTTCGAAG-CC-CACAA-TTCATTGGC-
66 CCCATTTCAAAGCCCACACAAGTT-AGTGGCA
* *** * * *
46780 ACTC-TTTCAAAG-CC-CACAAGTCAATGGC-A-TTCTTTCAAAGCCCACACAAGTCGGTGGCAA
1 ACCCATTTCAAAGCCCACACAAGTTGGTGGCAACCTATTTCAAAGCCCACACAAGTTGGTGGCAA
* *
46840 CTCC-TTTTAAAG-CC-CACAAGTCAGTGGC-
66 C-CCATTTCAAAGCCCACACAAGTTAGTGGCA
46868 ACCC-TTTC-AAGCCCAC
1 ACCCATTTCAAAGCCCAC
46884 GAGTCAGTGG
Statistics
Matches: 595, Mismatches: 89, Indels: 87
0.77 0.12 0.11
Matches are distributed among these distances:
82 4 0.01
83 6 0.01
84 126 0.21
85 42 0.07
86 52 0.09
87 15 0.03
88 74 0.12
89 24 0.04
90 55 0.09
91 13 0.02
92 15 0.03
93 5 0.01
94 12 0.02
95 2 0.00
96 150 0.25
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.23
Consensus pattern (96 bp):
ACCCATTTCAAAGCCCACACAAGTTGGTGGCAACCTATTTCAAAGCCCACACAAGTTGGTGGCAA
CCCATTTCAAAGCCCACACAAGTTAGTGGCA
Found at i:46418 original size:56 final size:56
Alignment explanation
Indices: 45485--47661 Score: 1301
Period size: 55 Copynumber: 37.8 Consensus size: 56
45475 CTGTGACCTC
* * * ** * * * *
45485 TTCAAAGTCCACGATTCAGTGGCATTTCTTTCTAAAGTCCACAACTCCGTGGCACTCTC
1 TTCAAAGCCCACAAGTCAGTGGCA-CCCTTTC-AAAGCCCACAAGTCAGTGGCA-TCTT
* * * * * * * *
45544 TT-AAAGTCCACAACTCCGTGGCACCCTTT-TAAGTCCACAACTCCGTGGCACCCTT
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCA-TCTT
* * * * * * * * *
45599 TT-AAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCGCAACTCCGTGGCACCCTT
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCA-TCTT
* * * * * * * * * *
45655 TT--AAGTCCACAACTCCGTGGCACTCTTTTAAAGTCCACAACTCCGTGACACCCTT
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCA-TCTT
* * * * * * *
45710 TT-AAAGTCCACAACTCCA-TGGCACCCTTTTAAAGTCCACAACTCCGTGGCACCCTT
1 TTCAAAGCCCACAAGT-CAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCA-TCTT
* * * * ** * * * * **
45766 TT--AAGTCCACAACTCCGTAGCATTCTTTTAAAGTCCACAACTCCGTGGCA-CCC
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCATCTT
* * * * * * * * *
45819 TTCTAAGTCCATAACTCTGTGGCACCCTTT-TAAGTCCACAACTCCGTGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCA-TCTT
* * * * * * * *
45875 TT-AAAGTCCACAACTCCGTGGTACCCTTT-TAAGTCCAAAACTTC-GTGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAA-GTCAGTGGCA-TCTT
* * * * * * *
45930 TT-AAAGTCCACAACTCCA-TGGCACCCTTT-TAAGTCCACAACTCCGTGGCACCCTT
1 TTCAAAGCCCACAAGT-CAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCA-TCTT
* * * * * * * *
45985 TT-AAAGTCCACAACTCCGTGGCATCCTTT-TAAGTCCACAACTCCGTGGCATCCTT
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCAT-CTT
* * * ** *
46040 TT--AAGTCCACAACTCCGTGGCAACACCCATTTCAAAGCCCACACAAGTTGGTGGCAACCTAT
1 TTCAAAGCCCACAAGTCAGTGG---CACCC-TTTCAAAG-CC-CACAAGTCAGTGGC-ATCT-T
* ** * * * * *
46102 TTCGAAGCCCACACAAGTTGGTGGCAACTCATTTGAAAGCCCACACAAGTTAGTGGCAACCCAT
1 TTCAAAG-CC-CACAAGTCAGTGGC-AC-CCTTTCAAAG-CC-CACAAGTCAGTGGC-A-TCTT
** ** * * *
46166 TTCAAAGCCCACATAAGTTGGTGGCAACTTATTTCAAAACCCACGCAAGTTAGTGGCAACCCATT
1 TTCAAAGCCCAC--AAGTCAGTGGC-AC-CCTTTCAAAGCCCA--CAAGTCAGTGGC-A-TC-TT
** * * * * *
46231 TT-AAAGCTCACACAAGTTGGTGGCAAGTCATTTGAAAGCCCACACAAGTCGGTGGCAACTCAT
1 TTCAAAGC-C-CACAAGTCAGTGGC-A-CCCTTTCAAAG-CC-CACAAGTCAGTGGC-A-TCTT
* * *
46294 TTCAAAGCCCACACAAGTCGGTGGCAACCCATTTCAAAGCCCATAAGTCGGTGGCATCTT
1 TTCAAAG-CC-CACAAGTCAGTGGC-ACCC-TTTCAAAGCCCACAAGTCAGTGGCATCTT
* * * *
46354 TTCAAAGCCCACAAGTCATTGGCACCCTTTCAAAGCCCACAAATCAGTGGTATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCATCTT
* * * * ** *
46410 TTCCAAGCCCACAAGTTAGTGGCAACTTTTCAAAGCCCACGCGTCAGTGGCAACTT
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCATCTT
* * * * * *
46466 TTCAAAGCCCACGAGTTAGTGGCATCCTTCCAAAGTCCACAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCATCTT
* * *
46522 TTCAAAGCCCACAAGTCAGTGGTATTCTTTTCAAAGCCCACAAGTCAGTGGCATCATT
1 TTCAAAGCCCACAAGTCAGTGGCA-CCCTTTCAAAGCCCACAAGTCAGTGGCATC-TT
* * * * *
46580 CTCAAAGCCCACAAGTCAGTGGCATCATTCTCAAAGCCCACACAAATTAGTGGCA-CATT
1 TTCAAAGCCCACAAGTCAGTGGCACCCTT-TCAAAG-CC-CACAAGTCAGTGGCATC-TT
* ***
46639 TTCAAAGCCCACACAAGTCGGTGGCATTATTTCAAAGCCCACACGAGTC-GATGGCAACTCTT
1 TTCAAAG-CC-CACAAGTCAGTGGCACCCTTTCAAAGCCCACA--AGTCAG-TGGC-A-TCTT
* * * * *
46701 TTTAAAGCCCACAAGTCAGTGGCACCCTTTCGAAGCCCACAAGTTAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCATCTT
* * * * *
46757 TTCGAAGCCCACAATTCATTGGCACTCTTTCAAAGCCCACAAGTCAATGGCAT-TCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCATCT-T
* * * *
46813 TTCAAAGCCCACACAAGTCGGTGGCAACTCCTTTTAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAG-CC-CACAAGTCAGTGGC-AC-CCTTTCAAAGCCCACAAGTCAGTGGCATCTT
* *** *
46873 TTC-AAGCCCACGAGTCAGTGGCATTTTTTCAAAGCCCACGAGTCAGTGGCA-CTTT
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCATC-TT
* * * *
46928 TTCAAAGCCCACAAGTCAGTGGCATCCTTTTAAAGTCCACGCAAGTCAGTGGCACCCTT
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAG-CC-CACAAGTCAGTGGCA-TCTT
** * *
46987 TT-AAAGCCCACGCAAGTCAGTGGCACATTTTCAAAGCCCACGAGTCAGTGGCGTCTTT
1 TTCAAAGCCCA--CAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCATC-TT
* * *
47045 TTCAAAGCCCACGAGTCAGTGGCACTCTTTCAAAGCCCACAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCATCTT
* * *
47101 TTCAAAGCCCACGCAAGTCAGTGGCACCCTTTTAAAGCCCACGCAAGTCAGTGGTACCTT
1 TTCAAAGCCCA--CAAGTCAGTGGCACCCTTTCAAAGCCCA--CAAGTCAGTGGCATCTT
* * * *
47161 TTCAAAGCCCACGAGTCAGCGGCACTCTTTCAAAGCCCACAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCATCTT
* *
47217 TTCAAAGCCCACGCAAGTCAGTGGCACCCTTTTAAAGCCCACGCAAGTTAGTGGCA-CATT
1 TTCAAAGCCCA--CAAGTCAGTGGCACCCTTTCAAAGCCCA--CAAGTCAGTGGCATC-TT
** * * *
47277 TTC-AAGCCCATGAGTCAGTGGCACTCTTTCAAAGCCCACGCAAGTCAATGGCATATT
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCA--CAAGTCAGTGGCATCTT
* * * * * * * *
47334 TTTAAAGCCCACGTAAGTCAATAGCACTCTTTTCAAAGCCTACGCAGGTCAGTGACACTTTT
1 TTCAAAGCCCAC--AAGTCAGTGGCAC-CCTTTCAAAGCC--CACAAGTCAGTGGCA-TCTT
** ** *
47396 TTCAAAGCCCATGAGTCAGTGGCACCCTTTCAAAGCCCATGAGTCAGTGGCACCTT
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCATCTT
** *
47452 TTC-AAGCCCACAAGTCAGTGGCACTTTTTC-AAGCCCACAAGTTAGTGGCA-CTTT
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCATC-TT
* **
47506 TTCAAAGCCCATAAGTCAGTGGCACTTTTTC-AAGCCCACAAGTCAGTGGCA-CTTT
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCATC-TT
* * *
47561 TTCAAAGCCCACAAGTGAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGACACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCA-TCTT
* *
47618 TTCAAAGCCCACAAGTCAGTGACACTCTTTTCAAAGCCCACAAG
1 TTCAAAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAG
47662 CCATTAGTAA
Statistics
Matches: 1778, Mismatches: 245, Indels: 191
0.80 0.11 0.09
Matches are distributed among these distances:
53 4 0.00
54 65 0.04
55 434 0.24
56 360 0.20
57 176 0.10
58 222 0.12
59 61 0.03
60 175 0.10
61 55 0.03
62 43 0.02
63 13 0.01
64 144 0.08
65 11 0.01
66 15 0.01
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (56 bp):
TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCATCTT
Found at i:46881 original size:27 final size:28
Alignment explanation
Indices: 45485--47661 Score: 1368
Period size: 28 Copynumber: 75.5 Consensus size: 28
45475 CTGTGACCTC
* * * **
45485 TTCAAAGTCCACGATTCAGTGGCATTTCT
1 TTCAAAGCCCACAAGTCAGTGGCA-CCCT
* * * *
45514 TTCTAAAGTCCACAACTCCGTGGCACTCT
1 TTC-AAAGCCCACAAGTCAGTGGCACCCT
* * *
45543 CTT-AAAGTCCACAACTCCGTGGCACCCT
1 -TTCAAAGCCCACAAGTCAGTGGCACCCT
* * * *
45571 TT-TAAGTCCACAACTCCGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* * * *
45598 TTTAAAGTCCACAACTCCGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* * * * *
45626 TTTAAAGTCCGCAACTCCGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* * * * *
45654 TT-TAAGTCCACAACTCCGTGGCACTCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* * * * *
45681 TTTAAAGTCCACAACTCCGTGACACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* * *
45709 TTTAAAGTCCACAACTCCA-TGGCACCCT
1 TTCAAAGCCCACAAGT-CAGTGGCACCCT
* * * *
45737 TTTAAAGTCCACAACTCCGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* * * * * **
45765 TT-TAAGTCCACAACTCCGTAGCATTCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* * * *
45792 TTTAAAGTCCACAACTCCGTGGCACCC-
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* * * * *
45819 TTCTAAGTCCATAACTCTGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* * * * *
45847 TT-TAAGTCCACAACTCCGTGGCACTCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* * * * *
45874 TTTAAAGTCCACAACTCCGTGGTACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* * * * *
45902 TT-TAAGTCCAAAACTTC-GTGGCACTCT
1 TTCAAAGCCCACAA-GTCAGTGGCACCCT
* * *
45929 TTTAAAGTCCACAACTCCA-TGGCACCCT
1 TTCAAAGCCCACAAGT-CAGTGGCACCCT
* * * *
45957 TT-TAAGTCCACAACTCCGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* * * * *
45984 TTTAAAGTCCACAACTCCGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* * * * *
46012 TT-TAAGTCCACAACTCCGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* * * *
46039 TT-TAAGTCCACAACTCCGTGGCAACACCCAT
1 TTCAAAGCCCACAAGTCAGTGG---CACCC-T
** *
46070 TTCAAAGCCCACACAAGTTGGTGGCAACCTAT
1 TTCAAAG-CC-CACAAGTCAGTGGC-ACC-CT
* ** *
46102 TTCGAAGCCCACACAAGTTGGTGGCAACTCAT
1 TTCAAAG-CC-CACAAGTCAGTGGC-AC-CCT
* *
46134 TTGAAAGCCCACACAAGTTAGTGGCAACCCAT
1 TTCAAAG-CC-CACAAGTCAGTGGC-ACCC-T
** **
46166 TTCAAAGCCCACATAAGTTGGTGGCAACTTAT
1 TTCAAAGCCCAC--AAGTCAGTGGC-AC-CCT
* *
46198 TTCAAAACCCACGCAAGTTAGTGGCAACCCAT
1 TTCAAAGCCCA--CAAGTCAGTGGC-ACCC-T
* ** * *
46230 TTTAAAGCTCACACAAGTTGGTGGCAAGTCAT
1 TTCAAAGC-C-CACAAGTCAGTGGC-A-CCCT
* * *
46262 TTGAAAGCCCACACAAGTCGGTGGCAACTCAT
1 TTCAAAG-CC-CACAAGTCAGTGGC-AC-CCT
*
46294 TTCAAAGCCCACACAAGTCGGTGGCAACCCAT
1 TTCAAAG-CC-CACAAGTCAGTGGC-ACCC-T
* * * *
46326 TTCAAAGCCCATAAGTCGGTGGCATCTT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
*
46354 TTCAAAGCCCACAAGTCATTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* * *
46382 TTCAAAGCCCACAAATCAGTGGTATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* * * *
46410 TTCCAAGCCCACAAGTTAGTGGCAACTT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
** * *
46438 TTCAAAGCCCACGCGTCAGTGGCAACTT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* * *
46466 TTCAAAGCCCACGAGTTAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* * *
46494 TCCAAAGTCCACAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* * *
46522 TTCAAAGCCCACAAGTCAGTGGTATTCTT
1 TTCAAAGCCCACAAGTCAGTGGCA-CCCT
* *
46551 TTCAAAGCCCACAAGTCAGTGGCATCAT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
46579 TCTCAAAGCCCACAAGTCAGTGGCATCAT
1 T-TCAAAGCCCACAAGTCAGTGGCACCCT
* * **
46608 TCTCAAAGCCCACACAAATTAGTGGCACATT
1 T-TCAAAG-CC-CACAAGTCAGTGGCACCCT
* ***
46639 TTCAAAGCCCACACAAGTCGGTGGCATTAT
1 TTCAAAG-CC-CACAAGTCAGTGGCACCCT
*
46669 TTCAAAGCCCACACGAGTC-GATGGCAACTCTT
1 TTCAAAGCCCACA--AGTCAG-TGGC-AC-CCT
*
46701 TTTAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
46729 TTCGAAGCCCACAAGTTAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* * * *
46757 TTCGAAGCCCACAATTCATTGGCACTCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* **
46785 TTCAAAGCCCACAAGTCAATGGCATTCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
*
46813 TTCAAAGCCCACACAAGTCGGTGGCAACTCCT
1 TTCAAAG-CC-CACAAGTCAGTGGC-AC-CCT
*
46845 TTTAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* ***
46873 TTC-AAGCCCACGAGTCAGTGGCATTTT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* **
46900 TTCAAAGCCCACGAGTCAGTGGCACTTT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
*
46928 TTCAAAGCCCACAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
46956 TTTAAAGTCCACGCAAGTCAGTGGCACCCT
1 TTCAAAG-CC-CACAAGTCAGTGGCACCCT
* **
46986 TTTAAAGCCCACGCAAGTCAGTGGCACATT
1 TTCAAAGCCCA--CAAGTCAGTGGCACCCT
* * **
47016 TTCAAAGCCCACGAGTCAGTGGCGTCTTT
1 TTCAAAGCCCACAAGTCAGTGGC-ACCCT
* *
47045 TTCAAAGCCCACGAGTCAGTGGCACTCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
*
47073 TTCAAAGCCCACAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
47101 TTCAAAGCCCACGCAAGTCAGTGGCACCCT
1 TTCAAAGCCCA--CAAGTCAGTGGCACCCT
* * *
47131 TTTAAAGCCCACGCAAGTCAGTGGTACCTT
1 TTCAAAGCCCA--CAAGTCAGTGGCACCCT
* * *
47161 TTCAAAGCCCACGAGTCAGCGGCACTCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
*
47189 TTCAAAGCCCACAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
47217 TTCAAAGCCCACGCAAGTCAGTGGCACCCT
1 TTCAAAGCCCA--CAAGTCAGTGGCACCCT
* * **
47247 TTTAAAGCCCACGCAAGTTAGTGGCACATT
1 TTCAAAGCCCA--CAAGTCAGTGGCACCCT
** *
47277 TTC-AAGCCCATGAGTCAGTGGCACTCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* ***
47304 TTCAAAGCCCACGCAAGTCAATGGCATATT
1 TTCAAAGCCCA--CAAGTCAGTGGCACCCT
* * * *
47334 TTTAAAGCCCACGTAAGTCAATAGCACTCTT
1 TTCAAAGCCCAC--AAGTCAGTGGCAC-CCT
* * * **
47365 TTCAAAGCCTACGCAGGTCAGTGACACTTTT
1 TTCAAAGCC--CACAAGTCAGTGGCAC-CCT
**
47396 TTCAAAGCCCATGAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
** *
47424 TTCAAAGCCCATGAGTCAGTGGCACCTT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
**
47452 TTC-AAGCCCACAAGTCAGTGGCACTTT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* **
47479 TTC-AAGCCCACAAGTTAGTGGCACTTT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* **
47506 TTCAAAGCCCATAAGTCAGTGGCACTTT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
**
47534 TTC-AAGCCCACAAGTCAGTGGCACTTT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
47561 TTCAAAGCCCACAAGTGAGTGGCACCTT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
47589 TTCAAAGCCCACAAGTCAGTGACACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCAC-CCT
* *
47618 TTCAAAGCCCACAAGTCAGTGACACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCAC-CCT
47647 TTCAAAGCCCACAAG
1 TTCAAAGCCCACAAG
47662 CCATTAGTAA
Statistics
Matches: 1841, Mismatches: 234, Indels: 146
0.83 0.11 0.07
Matches are distributed among these distances:
26 1 0.00
27 325 0.18
28 761 0.41
29 174 0.09
30 291 0.16
31 61 0.03
32 208 0.11
33 7 0.00
34 13 0.01
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (28 bp):
TTCAAAGCCCACAAGTCAGTGGCACCCT
Found at i:48324 original size:20 final size:20
Alignment explanation
Indices: 48299--48370 Score: 81
Period size: 20 Copynumber: 3.6 Consensus size: 20
48289 TACCTAGATG
48299 TATCGATACATTTTTCAATA
1 TATCGATACATTTTTCAATA
* * * *
48319 TATCGATACATGTATGAATG
1 TATCGATACATTTTTCAATA
* * *
48339 TATCGATATATTCTGCAATA
1 TATCGATACATTTTTCAATA
48359 TATCGATACATT
1 TATCGATACATT
48371 ATGTCTTTTT
Statistics
Matches: 40, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.35, C:0.14, G:0.11, T:0.40
Consensus pattern (20 bp):
TATCGATACATTTTTCAATA
Found at i:48358 original size:40 final size:39
Alignment explanation
Indices: 48296--48373 Score: 120
Period size: 40 Copynumber: 2.0 Consensus size: 39
48286 TTTTACCTAG
* *
48296 ATGTATCGATACATTTTTCAATATATCGATACATGTATGA
1 ATGTATCGATACATTCTGCAATATATCGATACAT-TATGA
*
48336 ATGTATCGATATATTCTGCAATATATCGATACATTATG
1 ATGTATCGATACATTCTGCAATATATCGATACATTATG
48374 TCTTTTTACC
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
39 4 0.11
40 31 0.89
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.40
Consensus pattern (39 bp):
ATGTATCGATACATTCTGCAATATATCGATACATTATGA
Found at i:53100 original size:22 final size:22
Alignment explanation
Indices: 53074--53137 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 22
53064 AAGGAGAGGT
53074 TTTCACTTGATTCCTCATTGAA
1 TTTCACTTGATTCCTCATTGAA
* * ***
53096 TTTCACCT-AATGAACATTGAA
1 TTTCACTTGATTCCTCATTGAA
*
53117 TTTCATTTGATTCCTCATTGA
1 TTTCACTTGATTCCTCATTGA
53138 TGATCACTTA
Statistics
Matches: 30, Mismatches: 11, Indels: 2
0.70 0.26 0.05
Matches are distributed among these distances:
21 15 0.50
22 15 0.50
ACGTcount: A:0.27, C:0.20, G:0.09, T:0.44
Consensus pattern (22 bp):
TTTCACTTGATTCCTCATTGAA
Found at i:53135 original size:43 final size:43
Alignment explanation
Indices: 53074--53165 Score: 141
Period size: 43 Copynumber: 2.1 Consensus size: 43
53064 AAGGAGAGGT
*
53074 TTTCACTTGATTCCTCATTGAAT-TTCACCTAATGAACATTGAA
1 TTTCACTTGATTCCTCATTG-ATGATCACCTAATGAACATTGAA
* *
53117 TTTCATTTGATTCCTCATTGATGATCACTTAATGAACATTGAA
1 TTTCACTTGATTCCTCATTGATGATCACCTAATGAACATTGAA
53160 TTTCAC
1 TTTCAC
53166 AAGGCTTTTC
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
42 2 0.05
43 42 0.95
ACGTcount: A:0.29, C:0.20, G:0.10, T:0.41
Consensus pattern (43 bp):
TTTCACTTGATTCCTCATTGATGATCACCTAATGAACATTGAA
Found at i:53165 original size:21 final size:21
Alignment explanation
Indices: 53089--53165 Score: 66
Period size: 21 Copynumber: 3.6 Consensus size: 21
53079 CTTGATTCCT
*
53089 CATTGAATTTCACCTAATGAA
1 CATTGAATTTCACTTAATGAA
* * ***
53110 CATTGAATTTCATTTGATTCCT
1 CATTGAATTTCACTT-AATGAA
*
53132 CATTG-ATGATCACTTAATGAA
1 CATTGAAT-TTCACTTAATGAA
53153 CATTGAATTTCAC
1 CATTGAATTTCAC
53166 AAGGCTTTTC
Statistics
Matches: 40, Mismatches: 13, Indels: 6
0.68 0.22 0.10
Matches are distributed among these distances:
21 26 0.65
22 14 0.35
ACGTcount: A:0.32, C:0.18, G:0.10, T:0.39
Consensus pattern (21 bp):
CATTGAATTTCACTTAATGAA
Found at i:53229 original size:15 final size:16
Alignment explanation
Indices: 53209--53238 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
53199 TCCATAAAGT
53209 TATTCTAA-TTTTTCA
1 TATTCTAAGTTTTTCA
53224 TATTCTAAGTTTTTC
1 TATTCTAAGTTTTTC
53239 TAAATTTCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.23, C:0.13, G:0.03, T:0.60
Consensus pattern (16 bp):
TATTCTAAGTTTTTCA
Found at i:53672 original size:273 final size:273
Alignment explanation
Indices: 53185--53736 Score: 955
Period size: 273 Copynumber: 2.0 Consensus size: 273
53175 CTTCAACTTC
* *
53185 TTTTTATGTTTTCTTCCATAAAGTTATTCTAATTTTTCATATTCTAAGTTTTTCTAAATTTCCTT
1 TTTTTATGTTTTCTTCAATAAAGTTATTCTAATTTTTCATATTCTAAGTTTTCCTAAATTTCCTT
53250 AGAGATAGCATAATAAAAGACAAACTTAAGCTTCTCATCGTCTAGAGCTTCATAAAAGAAATTCA
66 AGAGATAGCATAATAAAAGACAAACTTAAGCTTCTCATCGTCTAGAGCTTCATAAAAGAAATTCA
53315 TATCGTTTGCATAACTTTGTAATTTCTTCATGAATTTCTCCTCATTTGACGTTCCAACGCTATTC
131 TATCGTTTGCATAACTTTGTAATTTCTTCATGAATTTCTCCTCATTTGACGTTCCAACGCTATTC
*
53380 TTGATTACATTCCAAACACCTATGTCTTAAGCCATCACAAATACTTTTATCCTTAAATTCCAAGC
196 TTGATTACATTCCAAACACCCATGTCTTAAGCCATCACAAATACTTTTATCCTTAAATTCCAAGC
53445 CTAAAACTCATGA
261 CTAAAACTCATGA
* * *
53458 TTTTTATGTTTTCTTCAATAGAGTTATTTTAATTTTTCATATTCTAAGTTTTCCTAAATTTCTTT
1 TTTTTATGTTTTCTTCAATAAAGTTATTCTAATTTTTCATATTCTAAGTTTTCCTAAATTTCCTT
* * *
53523 TGAGATAGCATAATAAAAGACGAACTTAAGCTTCTCATCGTCTAGAGCTTCATAAAGGAAATTCA
66 AGAGATAGCATAATAAAAGACAAACTTAAGCTTCTCATCGTCTAGAGCTTCATAAAAGAAATTCA
* * *
53588 TAGT-GTTTGCATAA-TCTTGTAATTTCTTCATGAATTTCTCCTTATTTGACGTTCCAATGTTAT
131 TA-TCGTTTGCATAACT-TTGTAATTTCTTCATGAATTTCTCCTCATTTGACGTTCCAACGCTAT
*
53651 TCTTGATTACATTCTAAACACCCATGTCTTAAGCCATCACAAATACTTTTATCCTTAAATTCCAA
194 TCTTGATTACATTCCAAACACCCATGTCTTAAGCCATCACAAATACTTTTATCCTTAAATTCCAA
53716 GCCTAAAACTCATGA
259 GCCTAAAACTCATGA
53731 TTTTTA
1 TTTTTA
53737 AACTTTTAGA
Statistics
Matches: 264, Mismatches: 13, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
272 1 0.00
273 262 0.99
274 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.09, T:0.41
Consensus pattern (273 bp):
TTTTTATGTTTTCTTCAATAAAGTTATTCTAATTTTTCATATTCTAAGTTTTCCTAAATTTCCTT
AGAGATAGCATAATAAAAGACAAACTTAAGCTTCTCATCGTCTAGAGCTTCATAAAAGAAATTCA
TATCGTTTGCATAACTTTGTAATTTCTTCATGAATTTCTCCTCATTTGACGTTCCAACGCTATTC
TTGATTACATTCCAAACACCCATGTCTTAAGCCATCACAAATACTTTTATCCTTAAATTCCAAGC
CTAAAACTCATGA
Found at i:59168 original size:2 final size:2
Alignment explanation
Indices: 59163--59202 Score: 52
Period size: 2 Copynumber: 22.0 Consensus size: 2
59153 ATATATTTGC
59163 AT AT AT AT AT AT AT AT AT AT AT AT -T A- AT AT AT -T A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
59201 AT
1 AT
59203 TTTTATTAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
1 4 0.12
2 30 0.88
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:60177 original size:17 final size:19
Alignment explanation
Indices: 60140--60181 Score: 61
Period size: 17 Copynumber: 2.3 Consensus size: 19
60130 AATTATATTG
*
60140 AATAATTTTTATTTATTTA
1 AATAATTTTTATATATTTA
60159 AATAATTTTT-TAT-TTTA
1 AATAATTTTTATATATTTA
60176 AATAAT
1 AATAAT
60182 GAATTTGAGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 10 0.45
18 2 0.09
19 10 0.45
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (19 bp):
AATAATTTTTATATATTTA
Found at i:61904 original size:29 final size:28
Alignment explanation
Indices: 61847--61904 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 28
61837 ATCAAAACTT
61847 TTATAAATATAAAATACTTTAAACATGA
1 TTATAAATATAAAATACTTTAAACATGA
61875 TTATAATATGATAAAATA-TCTT-AACATGA
1 TTATAA-AT-ATAAAATACT-TTAAACATGA
61904 T
1 T
61905 AATGATACAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
28 6 0.22
29 11 0.41
30 10 0.37
ACGTcount: A:0.50, C:0.07, G:0.05, T:0.38
Consensus pattern (28 bp):
TTATAAATATAAAATACTTTAAACATGA
Found at i:62400 original size:20 final size:21
Alignment explanation
Indices: 62362--62400 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
62352 TTTATGCACG
62362 TTAAATAAAAATTAGATTAGA
1 TTAAATAAAAATTAGATTAGA
*
62383 TTAAATAAAATTTA-ATTA
1 TTAAATAAAAATTAGATTA
62401 TTTATTTGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.38
Consensus pattern (21 bp):
TTAAATAAAAATTAGATTAGA
Found at i:66718 original size:16 final size:13
Alignment explanation
Indices: 66686--66712 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
66676 AGATGTTAAT
66686 ATACATCTAATGA
1 ATACATCTAATGA
66699 ATACATCTAATGA
1 ATACATCTAATGA
66712 A
1 A
66713 GAATACTGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.15, G:0.07, T:0.30
Consensus pattern (13 bp):
ATACATCTAATGA
Found at i:74486 original size:23 final size:22
Alignment explanation
Indices: 74441--74484 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
74431 AATAATATTT
74441 TTATTTAAATTTAATTATAAAA
1 TTATTTAAATTTAATTATAAAA
74463 TTATTTAAATATTAA-TATAAAA
1 TTATTTAAAT-TTAATTATAAAA
74485 ATAATTTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 17 0.81
23 4 0.19
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
TTATTTAAATTTAATTATAAAA
Found at i:74491 original size:23 final size:22
Alignment explanation
Indices: 74443--74491 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 22
74433 TAATATTTTT
*
74443 ATTTAAATTTAATTATAAAATT
1 ATTTAAATTTAATTATAAAATA
74465 ATTTAAATATTAA-TATAAAAATA
1 ATTTAAAT-TTAATTAT-AAAATA
74488 ATTT
1 ATTT
74492 TTAATATATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 11 0.46
23 13 0.54
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (22 bp):
ATTTAAATTTAATTATAAAATA
Found at i:74784 original size:30 final size:30
Alignment explanation
Indices: 74732--74791 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
74722 TATGATTCAC
* * * *
74732 TATTAAATTTTATCAATGTATTTTTAATTT
1 TATTAAATCTTACCAATATATTTTCAATTT
*
74762 TATTAAATCTTACCATTATATTTTCAATTT
1 TATTAAATCTTACCAATATATTTTCAATTT
74792 CATTGATTGT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.08, G:0.02, T:0.57
Consensus pattern (30 bp):
TATTAAATCTTACCAATATATTTTCAATTT
Found at i:74861 original size:21 final size:22
Alignment explanation
Indices: 74837--74883 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
74827 TATTTCACGA
*
74837 AATA-TTT-TGTTTATAAATTTT
1 AATATTTTATGTTTA-AAATATT
74858 AATATTTTATGTTTAAAATATT
1 AATATTTTATGTTTAAAATATT
74880 AATA
1 AATA
74884 AAATTAACAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 4 0.17
22 13 0.57
23 6 0.26
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.55
Consensus pattern (22 bp):
AATATTTTATGTTTAAAATATT
Found at i:75658 original size:15 final size:17
Alignment explanation
Indices: 75624--75658 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
75614 AAATGTTATT
75624 TATATTAAATAATAACA
1 TATATTAAATAATAACA
75641 TATATTAAA-AATAA-A
1 TATATTAAATAATAACA
75656 TAT
1 TAT
75659 TTATATTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 4 0.22
16 5 0.28
17 9 0.50
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (17 bp):
TATATTAAATAATAACA
Found at i:75663 original size:19 final size:19
Alignment explanation
Indices: 75595--75676 Score: 62
Period size: 19 Copynumber: 4.2 Consensus size: 19
75585 ATAAAAAATT
75595 ATATTTATATTAAAACATTAA
1 ATATTTATATTAAAA-A-TAA
75616 ATGTTATTTATATTAAATAAT-A
1 A---TATTTATATTAAA-AATAA
*
75638 ACA--TATATTAAAAATAA
1 ATATTTATATTAAAAATAA
* *
75655 ATATTTATATTTATAATAA
1 ATATTTATATTAAAAATAA
75674 ATA
1 ATA
75677 AAAATTAAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 16
0.71 0.06 0.23
Matches are distributed among these distances:
16 3 0.06
17 12 0.24
19 16 0.32
21 1 0.02
22 2 0.04
23 1 0.02
24 14 0.28
25 1 0.02
ACGTcount: A:0.52, C:0.02, G:0.01, T:0.44
Consensus pattern (19 bp):
ATATTTATATTAAAAATAA
Found at i:76439 original size:16 final size:16
Alignment explanation
Indices: 76418--76449 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
76408 AATTAGAATA
*
76418 TAATTTAATAATAATT
1 TAATTTAACAATAATT
76434 TAATTTAACAATAATT
1 TAATTTAACAATAATT
76450 AAAGATAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (16 bp):
TAATTTAACAATAATT
Found at i:76626 original size:23 final size:23
Alignment explanation
Indices: 76598--76641 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
76588 TTTAATCAAA
*
76598 TTTTTAAAAAATAAATAAATATT
1 TTTTTAAAAAATAAAAAAATATT
*
76621 TTTTTAAAATATAAAAAAATA
1 TTTTTAAAAAATAAAAAAATA
76642 AATATATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (23 bp):
TTTTTAAAAAATAAAAAAATATT
Found at i:76641 original size:31 final size:31
Alignment explanation
Indices: 76570--76670 Score: 116
Period size: 31 Copynumber: 3.2 Consensus size: 31
76560 AATTAATTTT
* * *
76570 AAAAAATAAATATATTTTTTTAATCAAATTTTT
1 AAAAAATAAATATA-TTTTTT-ATAAAATTATA
76603 AAAAAATAAATAAATATTTTTT-TAAAA-TATA
1 AAAAAATAAAT--ATATTTTTTATAAAATTATA
*
76634 AAAAAATAAATATATTTTTTATAAAATTTTA
1 AAAAAATAAATATATTTTTTATAAAATTATA
76665 AAAAAA
1 AAAAAA
76671 AGAAAATACC
Statistics
Matches: 60, Mismatches: 4, Indels: 10
0.81 0.05 0.14
Matches are distributed among these distances:
29 9 0.15
30 5 0.08
31 22 0.37
32 4 0.07
33 11 0.18
34 6 0.10
35 3 0.05
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.42
Consensus pattern (31 bp):
AAAAAATAAATATATTTTTTATAAAATTATA
Found at i:76656 original size:23 final size:24
Alignment explanation
Indices: 76598--76660 Score: 65
Period size: 27 Copynumber: 2.5 Consensus size: 24
76588 TTTAATCAAA
*
76598 TTTTTAAAAAATAAATAAATAT-T
1 TTTTTATAAAATAAATAAATATAT
*
76621 TTTTTAAAATATAAAAAAATAAATATAT
1 TTTTT---ATA-AAATAAATAAATATAT
76649 TTTTTATAAAAT
1 TTTTTATAAAAT
76661 TTTAAAAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 9
0.73 0.07 0.20
Matches are distributed among these distances:
23 5 0.16
24 3 0.09
25 3 0.09
26 2 0.06
27 13 0.41
28 6 0.19
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (24 bp):
TTTTTATAAAATAAATAAATATAT
Found at i:82759 original size:18 final size:19
Alignment explanation
Indices: 82716--82766 Score: 52
Period size: 19 Copynumber: 2.7 Consensus size: 19
82706 ATTATTTACA
*
82716 TAATTTTTATAAATAATTAT
1 TAATATTTA-AAATAATTAT
*
82736 T-TTATTTAAAATAATT-T
1 TAATATTTAAAATAATTAT
82753 TAATATTTTAAAAT
1 TAATA-TTTAAAAT
82767 TTATTTAATA
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
17 2 0.08
18 10 0.38
19 13 0.50
20 1 0.04
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
TAATATTTAAAATAATTAT
Found at i:86750 original size:17 final size:18
Alignment explanation
Indices: 86720--86761 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
86710 AATTATGAGT
86720 TATTTTATGATAATTATTA
1 TATTTTAT-ATAATTATTA
*
86739 TATTTTAT-TAATTTTTA
1 TATTTTATATAATTATTA
86756 T-TTTTA
1 TATTTTA
86762 ATATGAATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 5 0.23
17 9 0.41
19 8 0.36
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (18 bp):
TATTTTATATAATTATTA
Found at i:90346 original size:20 final size:20
Alignment explanation
Indices: 90299--90373 Score: 80
Period size: 20 Copynumber: 3.8 Consensus size: 20
90289 AAAAAGACAT
*
90299 AATGTATCGATACATT-GTA
1 AATGTATCGATACATTCATA
*
90318 GAATATATCGATACATTCATA
1 -AATGTATCGATACATTCATA
* * * *
90339 CATGTATCGATATATTGAAA
1 AATGTATCGATACATTCATA
90359 AATGTATCGATACAT
1 AATGTATCGATACAT
90374 CAGGGTATGA
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTCATA
Found at i:90367 original size:40 final size:39
Alignment explanation
Indices: 90296--90373 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
90286 GGTAAAAAGA
* *
90296 CATAATGTATCGATACATTGTAGAATATATCGATACATT
1 CATAATGTATCGATACATTGAAAAATATATCGATACATT
* *
90335 CATACATGTATCGATATATTGAAAAATGTATCGATACAT
1 CATA-ATGTATCGATACATTGAAAAATATATCGATACAT
90374 CAGGGTATGA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.35
Consensus pattern (39 bp):
CATAATGTATCGATACATTGAAAAATATATCGATACATT
Found at i:90951 original size:32 final size:32
Alignment explanation
Indices: 90902--91187 Score: 473
Period size: 32 Copynumber: 8.9 Consensus size: 32
90892 AAAATGGTGA
* * **
90902 TTTGAAAAGGGTTGCCACTGACTTGCATGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
90934 TTTTAAATGGGTTGCCACCGACTTGTGTGGGT
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
90966 TTTGAAATGGGTTGCCGCCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
90998 TTTGAAATGGATTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
91030 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
91062 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
91094 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
91126 TTTGGAATGGGTTTCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
91158 TTTGGAATGGGTTGCCACCGACTTGTGTGG
1 TTTGAAATGGGTTGCCACCGACTTGTGTGG
91188 ATTTAAAAGG
Statistics
Matches: 239, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 239 1.00
ACGTcount: A:0.16, C:0.18, G:0.34, T:0.32
Consensus pattern (32 bp):
TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
Found at i:91221 original size:27 final size:27
Alignment explanation
Indices: 91183--91716 Score: 782
Period size: 27 Copynumber: 19.5 Consensus size: 27
91173 CACCGACTTG
* * *
91183 TGTGGATTTAAAAGGATGCCACGAAGT
1 TGTGGACTTAAAAGGGTGCCACGGAGT
91210 TGTGGACTTAAAAGGGTGCCACGGAGT
1 TGTGGACTTAAAAGGGTGCCACGGAGT
*
91237 TGTGGACTTAAAAGGGTGCCACAGAGT
1 TGTGGACTTAAAAGGGTGCCACGGAGT
*
91264 TGTGGTCTTAAAAGGGATGCCACGGAGT
1 TGTGGACTTAAAAGGG-TGCCACGGAGT
91292 TGTGGACTTAAAAGGGTGCCACGGAGT
1 TGTGGACTTAAAAGGGTGCCACGGAGT
91319 TGTGGACTTAAAAGGGTGCCACGGAGT
1 TGTGGACTTAAAAGGGTGCCACGGAGT
*
91346 TGTGGACTTAAAAGAGTGCCACGGAGT
1 TGTGGACTTAAAAGGGTGCCACGGAGT
91373 TGTGGACTTAAAGAGGGTGCCACGGAGT
1 TGTGGACTTAAA-AGGGTGCCACGGAGT
* * *
91401 TGTGGACTTTAAAAGAGCGCTACGGAGT
1 TGTGGAC-TTAAAAGGGTGCCACGGAGT
91429 TGTGGACTTAAAAGGGTGCCACGGAGT
1 TGTGGACTTAAAAGGGTGCCACGGAGT
* *
91456 TGTGGACTTTGAAA-GGTGCCACAGAGT
1 TGTGGAC-TTAAAAGGGTGCCACGGAGT
91483 TGTGGACTTAAAAGGGTGCCACGGAGT
1 TGTGGACTTAAAAGGGTGCCACGGAGT
*
91510 TGTGGACTTTAAAAGAGTGCCACGGAGT
1 TGTGGAC-TTAAAAGGGTGCCACGGAGT
**
91538 TGTGGACTTTGAAGGGTGCCACGGAGT
1 TGTGGACTTAAAAGGGTGCCACGGAGT
91565 TGTGGACTTAAAAGGGTGCCACGGAGT
1 TGTGGACTTAAAAGGGTGCCACGGAGT
*
91592 TGTGGACTTTAAAAGAGTGCCACGGAGT
1 TGTGGAC-TTAAAAGGGTGCCACGGAGT
*
91620 TGTGGACTTTAAAAGAGTGCCACGGAGT
1 TGTGGAC-TTAAAAGGGTGCCACGGAGT
* * * *
91648 TGTAGATTTAAAAGGGTGCCACAGAAT
1 TGTGGACTTAAAAGGGTGCCACGGAGT
* *
91675 TGTGGACTTAAAAAGGATGCCACAGAGT
1 TGTGGACTT-AAAAGGGTGCCACGGAGT
91703 TGTGGACTTCAAAA
1 TGTGGACTT-AAAA
91717 AGAAATGCCA
Statistics
Matches: 463, Mismatches: 36, Indels: 15
0.90 0.07 0.03
Matches are distributed among these distances:
26 5 0.01
27 276 0.60
28 177 0.38
29 5 0.01
ACGTcount: A:0.28, C:0.14, G:0.34, T:0.24
Consensus pattern (27 bp):
TGTGGACTTAAAAGGGTGCCACGGAGT
Found at i:91293 original size:82 final size:81
Alignment explanation
Indices: 91183--91716 Score: 782
Period size: 82 Copynumber: 6.5 Consensus size: 81
91173 CACCGACTTG
* * *
91183 TGTGGATTTAAAAGGATGCCACGAAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAA
1 TGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAA
*
91248 AAGGGTGCCACAGAGT
66 AAGGGTGCCACGGAGT
*
91264 TGTGGTCTTAAAAGGGATGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTA
1 TGTGGACTTAAAAGGG-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTA
91329 AAAGGGTGCCACGGAGT
65 AAAGGGTGCCACGGAGT
*
91346 TGTGGACTTAAAAGAGTGCCACGGAGTTGTGGACTTAAAGAGGGTGCCACGGAGTTGTGGACTTT
1 TGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAA-AGGGTGCCACGGAGTTGTGGAC-TT
* * *
91411 AAAAGAGCGCTACGGAGT
64 AAAAGGGTGCCACGGAGT
* *
91429 TGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTTGAAA-GGTGCCACAGAGTTGTGGACTTA
1 TGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACGGAGTTGTGGACTTA
91493 AAAGGGTGCCACGGAGT
65 AAAGGGTGCCACGGAGT
* **
91510 TGTGGACTTTAAAAGAGTGCCACGGAGTTGTGGACTTTGAAGGGTGCCACGGAGTTGTGGACTTA
1 TGTGGAC-TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTA
91575 AAAGGGTGCCACGGAGT
65 AAAGGGTGCCACGGAGT
* * * *
91592 TGTGGACTTTAAAAGAGTGCCACGGAGTTGTGGACTTTAAAAGAGTGCCACGGAGTTGTAGATTT
1 TGTGGAC-TTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACGGAGTTGTGGACTT
* *
91657 AAAAGGGTGCCACAGAAT
64 AAAAGGGTGCCACGGAGT
* *
91675 TGTGGACTTAAAAAGGATGCCACAGAGTTGTGGACTTCAAAA
1 TGTGGACTT-AAAAGGGTGCCACGGAGTTGTGGACTT-AAAA
91717 AGAAATGCCA
Statistics
Matches: 414, Mismatches: 30, Indels: 16
0.90 0.07 0.03
Matches are distributed among these distances:
81 64 0.15
82 222 0.54
83 124 0.30
84 4 0.01
ACGTcount: A:0.28, C:0.14, G:0.34, T:0.24
Consensus pattern (81 bp):
TGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAA
AAGGGTGCCACGGAGT
Found at i:91568 original size:219 final size:218
Alignment explanation
Indices: 91183--91716 Score: 826
Period size: 219 Copynumber: 2.4 Consensus size: 218
91173 CACCGACTTG
*
91183 TGTGGA-TTTAAAAGGATGC-CACGAAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC-T
1 TGTGGACTTTAAAA-GA-GCGCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTT
* *
91245 TAAAAGGGTGCCACAGAGTTGTGGTCTTAAAAGGGATGCCACGGAGTTGTGGACTTAAAAGGGTG
64 TAAAA-GGTGCCACAGAGTTGTGGACTTAAAAGGGATGCCACGGAGTTGTGGACTTAAAAGAGTG
91310 CCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGAGTGCCACGGAGTTG
128 CCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGAGTGCCACGGAGTTG
*
91375 TGGAC-TTAAAGAGGGTGCCACGGAGT
193 TGGACTTTAAA-AGAGTGCCACGGAGT
91401 TGTGGACTTTAAAAGAGCGCTACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTT
1 TGTGGACTTTAAAAGAGCGC-ACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTT
*
91466 GAAAGGTGCCACAGAGTTGTGGACTTAAAAGGG-TGCCACGGAGTTGTGGACTTTAAAAGAGTGC
65 AAAAGGTGCCACAGAGTTGTGGACTTAAAAGGGATGCCACGGAGTTGTGGAC-TTAAAAGAGTGC
** *
91530 CACGGAGTTGTGGACTTTGAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGT
129 CACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGAGTGCCACGGAGTTGT
91595 GGACTTTAAAAGAGTGCCACGGAGT
194 GGACTTTAAAAGAGTGCCACGGAGT
* * * * * *
91620 TGTGGACTTTAAAAGAGTGCCACGGAGTTGTAGATTTAAAAGGGTGCCACAGAATTGTGGACTTA
1 TGTGGACTTTAAAAGAGCG-CACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTT
91685 AAAAGGATGCCACAGAGTTGTGGACTTCAAAA
65 AAAAGG-TGCCACAGAGTTGTGGACTT-AAAA
91717 AGAAATGCCA
Statistics
Matches: 292, Mismatches: 15, Indels: 15
0.91 0.05 0.05
Matches are distributed among these distances:
217 2 0.01
218 27 0.09
219 228 0.78
220 31 0.11
221 4 0.01
ACGTcount: A:0.28, C:0.14, G:0.34, T:0.24
Consensus pattern (218 bp):
TGTGGACTTTAAAAGAGCGCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTTA
AAAGGTGCCACAGAGTTGTGGACTTAAAAGGGATGCCACGGAGTTGTGGACTTAAAAGAGTGCCA
CGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGAGTGCCACGGAGTTGTGG
ACTTTAAAAGAGTGCCACGGAGT
Found at i:100219 original size:20 final size:20
Alignment explanation
Indices: 100172--100246 Score: 80
Period size: 20 Copynumber: 3.8 Consensus size: 20
100162 AAAAAGACAT
*
100172 AATGTATCGATACATT-GTA
1 AATGTATCGATACATTCATA
*
100191 GAATATATCGATACATTCATA
1 -AATGTATCGATACATTCATA
* * * *
100212 CATGTATCGATATATTGAAA
1 AATGTATCGATACATTCATA
100232 AATGTATCGATACAT
1 AATGTATCGATACAT
100247 CAGGGTATGA
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTCATA
Found at i:100240 original size:40 final size:39
Alignment explanation
Indices: 100169--100246 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
100159 GGTAAAAAGA
* *
100169 CATAATGTATCGATACATTGTAGAATATATCGATACATT
1 CATAATGTATCGATACATTGAAAAATATATCGATACATT
* *
100208 CATACATGTATCGATATATTGAAAAATGTATCGATACAT
1 CATA-ATGTATCGATACATTGAAAAATATATCGATACAT
100247 CAGGGTATGA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.35
Consensus pattern (39 bp):
CATAATGTATCGATACATTGAAAAATATATCGATACATT
Found at i:101121 original size:26 final size:27
Alignment explanation
Indices: 101072--101133 Score: 90
Period size: 26 Copynumber: 2.3 Consensus size: 27
101062 GATAATGATA
* *
101072 ATTTAGATTCAAAATTAATTTAATTTT
1 ATTTAAATTCAAAATTAATCTAATTTT
*
101099 TTTTAAATTC-AAATTAATCTAATTTT
1 ATTTAAATTCAAAATTAATCTAATTTT
101125 ATTTAAATT
1 ATTTAAATT
101134 AATCCAAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
26 23 0.74
27 8 0.26
ACGTcount: A:0.40, C:0.05, G:0.02, T:0.53
Consensus pattern (27 bp):
ATTTAAATTCAAAATTAATCTAATTTT
Found at i:101147 original size:26 final size:25
Alignment explanation
Indices: 101083--101148 Score: 62
Period size: 26 Copynumber: 2.6 Consensus size: 25
101073 TTTAGATTCA
* *
101083 AAATTAATTTAATTTTTTTTAAATT
1 AAATAAATTTAATTTTATTTAAATT
* *
101108 CAAATTAATCTAATTTTATTTAAATT
1 -AAATAAATTTAATTTTATTTAAATT
101134 -AATCCAAATTTAATT
1 AAAT--AAATTTAATT
101149 CAACTGATCG
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
24 3 0.09
26 31 0.91
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (25 bp):
AAATAAATTTAATTTTATTTAAATT
Found at i:101698 original size:22 final size:21
Alignment explanation
Indices: 101672--101713 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
101662 AAATTTAAAA
101672 ATAT-TTTTAT-ATTAATATTT
1 ATATATTTTATAATTAA-ATTT
101692 ATATATTTTATAATTAAATTT
1 ATATATTTTATAATTAAATTT
101713 A
1 A
101714 AAATATAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 4 0.20
21 11 0.55
22 5 0.25
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (21 bp):
ATATATTTTATAATTAAATTT
Found at i:101719 original size:22 final size:22
Alignment explanation
Indices: 101662--101719 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 22
101652 TAATTAATAA
101662 AAATTTAAAAATATTTTTATATT
1 AAATTT-AAAATATTTTTATATT
*
101685 AATATTT-ATATA-TTTTATAATT
1 AA-ATTTAAAATATTTTTAT-ATT
101707 AAATTTAAAATAT
1 AAATTTAAAATAT
101720 AATTATTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
21 10 0.34
22 13 0.45
23 2 0.07
24 4 0.14
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
AAATTTAAAATATTTTTATATT
Found at i:101929 original size:49 final size:49
Alignment explanation
Indices: 101868--101967 Score: 130
Period size: 49 Copynumber: 2.0 Consensus size: 49
101858 TCAAGTTGCA
* *
101868 AAATTTTGAGTTATATTCTTTTTCTTTTCTGAATCTATCAATTAAAAAT
1 AAATTTTGAGTTATATTCTTTTTCTTTTCTAAACCTATCAATTAAAAAT
* * **
101917 AAATATTT-AGTTATATTTTTTTTCTTTTGTAAACCTATCGGTTAAAAAT
1 AAAT-TTTGAGTTATATTCTTTTTCTTTTCTAAACCTATCAATTAAAAAT
101966 AA
1 AA
101968 GTATAAAGAA
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
49 41 0.93
50 3 0.07
ACGTcount: A:0.34, C:0.09, G:0.07, T:0.50
Consensus pattern (49 bp):
AAATTTTGAGTTATATTCTTTTTCTTTTCTAAACCTATCAATTAAAAAT
Found at i:102921 original size:21 final size:23
Alignment explanation
Indices: 102878--102921 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 23
102868 TAAAATATTA
*
102878 TTTTTATATTAATATTTATATAT
1 TTTTTATATTAATATTTAAATAT
102901 TTTTTA-ATTAA-ATTTAAATAT
1 TTTTTATATTAATATTTAAATAT
102922 AAATATTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 9 0.45
22 5 0.25
23 6 0.30
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (23 bp):
TTTTTATATTAATATTTAAATAT
Found at i:102922 original size:23 final size:26
Alignment explanation
Indices: 102865--102922 Score: 65
Period size: 23 Copynumber: 2.5 Consensus size: 26
102855 TTTACCATAT
*
102865 TATTAAAATAT-TATTTTTATATTAA
1 TATTTAAATATATATTTTTATATTAA
102890 TATTT--ATATAT-TTTTTA-ATTAA
1 TATTTAAATATATATTTTTATATTAA
102912 -ATTTAAATATA
1 TATTTAAATATA
102923 AATATTATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
21 4 0.14
22 5 0.17
23 15 0.52
24 1 0.03
25 4 0.14
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (26 bp):
TATTTAAATATATATTTTTATATTAA
Found at i:102943 original size:25 final size:25
Alignment explanation
Indices: 102870--102945 Score: 75
Period size: 25 Copynumber: 3.0 Consensus size: 25
102860 CATATTATTA
*
102870 AAATATTATTTTTA-TATTAATATTT
1 AAATATTATTTTTATTATTAA-ATAT
* *
102895 ATATATT-TTTTAATTAAATTTAAATAT
1 AAATATTATTTTTATT--A-TTAAATAT
102922 AAATATTATTTTTATTATTAAATA
1 AAATATTATTTTTATTATTAAATA
102946 GTAATTCAGA
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
24 5 0.12
25 14 0.34
26 1 0.02
27 10 0.24
28 11 0.27
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (25 bp):
AAATATTATTTTTATTATTAAATAT
Found at i:103081 original size:19 final size:20
Alignment explanation
Indices: 103057--103094 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
103047 ACATGTTATG
*
103057 TTATTACAT-TATTTTATTT
1 TTATTAAATATATTTTATTT
103076 TTATTAAATATATTTTATT
1 TTATTAAATATATTTTATT
103095 CATATCTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.66
Consensus pattern (20 bp):
TTATTAAATATATTTTATTT
Found at i:103886 original size:20 final size:18
Alignment explanation
Indices: 103870--103921 Score: 67
Period size: 18 Copynumber: 3.1 Consensus size: 18
103860 TATTTTAAAT
103870 ATTAAAATAAAATTTTAA
1 ATTAAAATAAAATTTTAA
*
103888 ATTAAATTAAAA--TTAA
1 ATTAAAATAAAATTTTAA
103904 A-T-AAATAAAATTTTAA
1 ATTAAAATAAAATTTTAA
103920 AT
1 AT
103922 ATGATCTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
14 7 0.24
15 1 0.03
16 10 0.34
18 11 0.38
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
ATTAAAATAAAATTTTAA
Found at i:103919 original size:16 final size:16
Alignment explanation
Indices: 103874--103922 Score: 66
Period size: 16 Copynumber: 3.1 Consensus size: 16
103864 TTAAATATTA
103874 AAATAAAATTTTAAATT
1 AAATAAAATTTTAAA-T
103891 AAATTAAAA--TTAAAT
1 AAA-TAAAATTTTAAAT
103906 AAATAAAATTTTAAAT
1 AAATAAAATTTTAAAT
103922 A
1 A
103923 TGATCTAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
14 5 0.17
15 4 0.14
16 12 0.41
17 3 0.10
18 5 0.17
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (16 bp):
AAATAAAATTTTAAAT
Found at i:107294 original size:3 final size:3
Alignment explanation
Indices: 107280--107321 Score: 57
Period size: 3 Copynumber: 14.0 Consensus size: 3
107270 TCAATGTAAG
* **
107280 TAA TAA TGA TAA TAA CGA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
107322 CTCTCTTGAA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:107512 original size:20 final size:20
Alignment explanation
Indices: 107487--107525 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
107477 AATGTCAAAA
107487 TTTATATA-AATATATAATAT
1 TTTATATATAAT-TATAATAT
107507 TTTATATATAATTATAATA
1 TTTATATATAATTATAATA
107526 CATAACTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 15 0.83
21 3 0.17
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
TTTATATATAATTATAATAT
Found at i:109243 original size:41 final size:39
Alignment explanation
Indices: 109172--109332 Score: 117
Period size: 41 Copynumber: 3.8 Consensus size: 39
109162 GTTCTTATCA
** *
109172 TTTAATATAATCTCAATAATCTTTAATATAATTTAGGTAATC
1 TTTAATATAAT-TTTATAAT-TTTTATATAATTTAGGTAA-C
* *
109214 TTTAATTTAATTTTAGTAATTTTTATATAATTTTA-ATAAC
1 TTTAATATAATTTTA-TAATTTTTATATAA-TTTAGGTAAC
* * *
109254 TTTTAATATAATTTTCATAATTTTTATTAAAATTTTGGTTAAAA
1 -TTTAATATAATTTT-ATAATTTTTA-TATAATTTAGG-T-AAC
*
109298 TTTTATATAATTTTAATAACTTTTTAATATAATTT
1 TTTAATATAATTTT-ATAA-TTTTT-ATATAATTT
109333 TAATAATTTT
Statistics
Matches: 96, Mismatches: 13, Indels: 18
0.76 0.10 0.14
Matches are distributed among these distances:
40 1 0.01
41 39 0.41
42 23 0.24
43 18 0.19
44 14 0.15
45 1 0.01
ACGTcount: A:0.39, C:0.04, G:0.03, T:0.54
Consensus pattern (39 bp):
TTTAATATAATTTTATAATTTTTATATAATTTAGGTAAC
Found at i:109333 original size:11 final size:11
Alignment explanation
Indices: 109187--109337 Score: 84
Period size: 11 Copynumber: 14.1 Consensus size: 11
109177 TATAATCTCA
109187 ATAATCTTTAAT
1 ATAAT-TTTAAT
*
109199 ATAA-TTT-AG
1 ATAATTTTAAT
*
109208 GTAATCTTTAAT
1 ATAAT-TTTAAT
*
109220 TTAATTTT-A-
1 ATAATTTTAAT
* *
109229 GTAATTTTTAT
1 ATAATTTTAAT
109240 ATAATTTTAAT
1 ATAATTTTAAT
*
109251 A-ACTTTTAAT
1 ATAATTTTAAT
*
109261 ATAATTTTCAT
1 ATAATTTTAAT
* *
109272 A-ATTTTTATT
1 ATAATTTTAAT
* **
109282 AAAATTTTGGTT
1 ATAATTTT-AAT
*
109294 AAAATTTT-AT
1 ATAATTTTAAT
109304 ATAATTTTAAT
1 ATAATTTTAAT
*
109315 A-ACTTTTTAAT
1 ATA-ATTTTAAT
109326 ATAATTTTAAT
1 ATAATTTTAAT
109337 A
1 A
109338 ATTTTGATGA
Statistics
Matches: 109, Mismatches: 19, Indels: 23
0.72 0.13 0.15
Matches are distributed among these distances:
9 11 0.10
10 30 0.28
11 48 0.44
12 20 0.18
ACGTcount: A:0.39, C:0.03, G:0.03, T:0.54
Consensus pattern (11 bp):
ATAATTTTAAT
Found at i:109342 original size:21 final size:21
Alignment explanation
Indices: 109172--109342 Score: 159
Period size: 21 Copynumber: 8.1 Consensus size: 21
109162 GTTCTTATCA
* * *
109172 TTTAATATAATCTCAATAATC
1 TTTAATATAATTTTAATAATT
* *
109193 TTTAATATAA-TTTAGGTAATC
1 TTTAATATAATTTTA-ATAATT
* *
109214 TTTAATTTAATTTTAGTAATT
1 TTTAATATAATTTTAATAATT
*
109235 TTT-ATATAATTTTAATAACT
1 TTTAATATAATTTTAATAATT
*
109255 TTTAATATAATTTTCATAATT
1 TTTAATATAATTTTAATAATT
* * ** *
109276 TTTATTAAAATTTTGGTTAAAAT
1 TTTAATATAATTTT-AAT-AATT
109299 TTT-ATATAATTTTAATAACTT
1 TTTAATATAATTTTAATAA-TT
109320 TTTAATATAATTTTAATAATT
1 TTTAATATAATTTTAATAATT
109341 TT
1 TT
109343 GATGACATTT
Statistics
Matches: 123, Mismatches: 20, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
20 21 0.17
21 68 0.55
22 28 0.23
23 6 0.05
ACGTcount: A:0.39, C:0.04, G:0.03, T:0.54
Consensus pattern (21 bp):
TTTAATATAATTTTAATAATT
Found at i:109691 original size:27 final size:27
Alignment explanation
Indices: 109637--109709 Score: 67
Period size: 27 Copynumber: 2.7 Consensus size: 27
109627 TGATTTTTTT
* * ** *
109637 AACTTTTATATAATTTTGGTTTTGATA
1 AACTTTAACATAATTTTGGTAATAATA
109664 AACTTTAACATAATTTTGGTAATAATA
1 AACTTTAACATAATTTTGGTAATAATA
*
109691 ATCTTTCATACA-AATTTTG
1 AACTTT-A-ACATAATTTTG
109710 TAACCTTTAA
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
27 27 0.71
28 8 0.21
29 3 0.08
ACGTcount: A:0.36, C:0.08, G:0.08, T:0.48
Consensus pattern (27 bp):
AACTTTAACATAATTTTGGTAATAATA
Found at i:109759 original size:21 final size:21
Alignment explanation
Indices: 109705--109759 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
109695 TTCATACAAA
* *
109705 TTTTGTAACCTTTAATATAAT
1 TTTTATAACTTTTAATATAAT
* * * *
109726 TTTAAAAATTTTTTATATAAT
1 TTTTATAACTTTTAATATAAT
109747 TTTTATAACTTTT
1 TTTTATAACTTTT
109760 GCAATATTTT
Statistics
Matches: 25, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.58
Consensus pattern (21 bp):
TTTTATAACTTTTAATATAAT
Found at i:109807 original size:21 final size:21
Alignment explanation
Indices: 109765--109814 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
109755 CTTTTGCAAT
* *
109765 ATTTTGGTAATTTTAAATATA
1 ATTTTGGTAATCTTAAACATA
109786 ATTTTGGTAACTCTT-AACATA
1 ATTTTGGTAA-TCTTAAACATA
*
109807 ATCTTGGT
1 ATTTTGGT
109815 TTACTTTTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 22 0.88
22 3 0.12
ACGTcount: A:0.32, C:0.08, G:0.12, T:0.48
Consensus pattern (21 bp):
ATTTTGGTAATCTTAAACATA
Found at i:109858 original size:21 final size:21
Alignment explanation
Indices: 109834--109888 Score: 60
Period size: 21 Copynumber: 2.6 Consensus size: 21
109824 ATAATATTTG
109834 ATATTATTTTGA-AAACTTTCT
1 ATATTATTTTGATAAA-TTTCT
*
109855 ATA-TAGTTTTGATAAATTTTT
1 ATATTA-TTTTGATAAATTTCT
*
109876 ATATAATTTTGAT
1 ATATTATTTTGAT
109889 TATGTTGTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
20 2 0.07
21 23 0.79
22 4 0.14
ACGTcount: A:0.35, C:0.04, G:0.07, T:0.55
Consensus pattern (21 bp):
ATATTATTTTGATAAATTTCT
Found at i:109937 original size:21 final size:21
Alignment explanation
Indices: 109830--109940 Score: 59
Period size: 21 Copynumber: 5.3 Consensus size: 21
109820 TTTTATAATA
*
109830 TTTGATATTATTTTGAA-AACT
1 TTTGATATAATTTT-AATAACT
* * *
109851 TTCT-ATATAGTTTTGATAAAT
1 TT-TGATATAATTTTAATAACT
* * *
109872 TTTTATATAATTTTGATTA-T
1 TTTGATATAATTTTAATAACT
* * * * *
109892 GTTG-TAAAAATTTTAGTATCA
1 TTTGAT-ATAATTTTAATAACT
109913 TTTGATATAATTTTAATAACT
1 TTTGATATAATTTTAATAACT
109934 TTTGATA
1 TTTGATA
109941 ACTATATAAT
Statistics
Matches: 65, Mismatches: 19, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
19 1 0.02
20 13 0.20
21 49 0.75
22 2 0.03
ACGTcount: A:0.34, C:0.04, G:0.09, T:0.53
Consensus pattern (21 bp):
TTTGATATAATTTTAATAACT
Found at i:109968 original size:21 final size:20
Alignment explanation
Indices: 109913--109990 Score: 83
Period size: 21 Copynumber: 4.0 Consensus size: 20
109903 TTTAGTATCA
*
109913 TTTGATATAATTTTA-ATAACT
1 TTTGATA-ACTTTTATATAA-T
109934 TTTGATAAC---TATATAAT
1 TTTGATAACTTTTATATAAT
*
109951 TTTGATAATTTTTAATATAAT
1 TTTGATAACTTTT-ATATAAT
109972 TTTGATAACTTTTATATAA
1 TTTGATAACTTTTATATAA
109991 GTATAATTTT
Statistics
Matches: 49, Mismatches: 3, Indels: 11
0.78 0.05 0.17
Matches are distributed among these distances:
17 11 0.22
18 4 0.08
20 8 0.16
21 26 0.53
ACGTcount: A:0.38, C:0.04, G:0.05, T:0.53
Consensus pattern (20 bp):
TTTGATAACTTTTATATAAT
Found at i:110017 original size:48 final size:48
Alignment explanation
Indices: 109900--110018 Score: 122
Period size: 48 Copynumber: 2.5 Consensus size: 48
109890 ATGTTGTAAA
109900 AATTTTA-GTATCATTTGATATAATTTTAATAACTTTTGATAACTATAT
1 AATTTTAGGTATCATTTGATATAATTTTAATAACTTTTGATAAC-ATAT
* * * *
109948 AATTTT-GATAAT-TTTTAATATAATTTTGATAACTTTT-ATATA-AGTAT
1 AATTTTAGGT-ATCATTTGATATAATTTTAATAACTTTTGATA-ACA-TAT
*
109995 AATTTTAGGTATCCTTTGATATAA
1 AATTTTAGGTATCATTTGATATAA
110019 CACAATAACA
Statistics
Matches: 58, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
46 1 0.02
47 14 0.24
48 41 0.71
49 2 0.03
ACGTcount: A:0.37, C:0.05, G:0.08, T:0.50
Consensus pattern (48 bp):
AATTTTAGGTATCATTTGATATAATTTTAATAACTTTTGATAACATAT
Found at i:110084 original size:21 final size:22
Alignment explanation
Indices: 110060--110118 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
110050 TTTATATTCA
110060 TTTTTATAATATTTGTAAT-AG
1 TTTTTATAATATTTGTAATAAG
* *
110081 TTTTTGTAATTTTTGT-ATAAG
1 TTTTTATAATATTTGTAATAAG
*
110102 -TTTAATAATATTTGTAA
1 TTTTTATAATATTTGTAA
110119 CAATAATGAT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
20 14 0.45
21 17 0.55
ACGTcount: A:0.32, C:0.00, G:0.10, T:0.58
Consensus pattern (22 bp):
TTTTTATAATATTTGTAATAAG
Found at i:110151 original size:21 final size:21
Alignment explanation
Indices: 110023--110161 Score: 67
Period size: 21 Copynumber: 6.6 Consensus size: 21
110013 ATATAACACA
*
110023 ATAACATTTT-ATATAATTTTG
1 ATAAC-TTTTGATATAATTTTT
*
110044 ATAACTTTT-ATATTCATTTTT
1 ATAACTTTTGATA-TAATTTTT
*
110065 ATAA-TATTTG-TAATAGTTTTT
1 ATAACT-TTTGAT-ATAATTTTT
* * * *
110086 GTAATTTTTG-TATAAGTTTA
1 ATAACTTTTGATATAATTTTT
* ** *
110106 ATAA-TATTTG-TAACAATAATG
1 ATAACT-TTTGAT-ATAATTTTT
110127 ATAACTTTTGATATAATTTTT
1 ATAACTTTTGATATAATTTTT
110148 ATAACTTTTTGATA
1 ATAAC-TTTTGATA
110162 ACCCTTTAAA
Statistics
Matches: 90, Mismatches: 18, Indels: 19
0.71 0.14 0.15
Matches are distributed among these distances:
19 1 0.01
20 22 0.24
21 55 0.61
22 12 0.13
ACGTcount: A:0.35, C:0.04, G:0.07, T:0.53
Consensus pattern (21 bp):
ATAACTTTTGATATAATTTTT
Found at i:110195 original size:21 final size:21
Alignment explanation
Indices: 110171--110228 Score: 62
Period size: 21 Copynumber: 2.8 Consensus size: 21
110161 AACCCTTTAA
* ***
110171 ATAATTTTAATAATTCTTGAT
1 ATAATTTTAATAACTCCAAAT
* *
110192 ATAATTATAGTAACTCCAAAT
1 ATAATTTTAATAACTCCAAAT
110213 ATAATTTTAATAACTC
1 ATAATTTTAATAACTC
110229 TATCTATTTT
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.43, C:0.10, G:0.03, T:0.43
Consensus pattern (21 bp):
ATAATTTTAATAACTCCAAAT
Found at i:110787 original size:48 final size:48
Alignment explanation
Indices: 110693--110788 Score: 183
Period size: 48 Copynumber: 2.0 Consensus size: 48
110683 TTTTTTCTCA
*
110693 TTTTTCTCTAATTAACTCACATTTATGATGAATTTTATTATTTTCTTG
1 TTTTTCTCTAAATAACTCACATTTATGATGAATTTTATTATTTTCTTG
110741 TTTTTCTCTAAATAACTCACATTTATGATGAATTTTATTATTTTCTTG
1 TTTTTCTCTAAATAACTCACATTTATGATGAATTTTATTATTTTCTTG
110789 GATATTGAGT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.26, C:0.12, G:0.06, T:0.55
Consensus pattern (48 bp):
TTTTTCTCTAAATAACTCACATTTATGATGAATTTTATTATTTTCTTG
Found at i:113912 original size:33 final size:33
Alignment explanation
Indices: 113875--113941 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
113865 TTCAACGATT
113875 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
113908 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
113941 T
1 T
113942 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:113913 original size:13 final size:13
Alignment explanation
Indices: 113895--113919 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
113885 CATAAAATGT
113895 TGTATCGATACAA
1 TGTATCGATACAA
113908 TGTATCGATACA
1 TGTATCGATACA
113920 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:114000 original size:13 final size:13
Alignment explanation
Indices: 113982--114006 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
113972 ATTACTCAAA
113982 TGTATCGATACAT
1 TGTATCGATACAT
113995 TGTATCGATACA
1 TGTATCGATACA
114007 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:114108 original size:52 final size:52
Alignment explanation
Indices: 114015--114138 Score: 207
Period size: 52 Copynumber: 2.4 Consensus size: 52
114005 CACTGATCTT
*
114015 TGTATCGATACATGCAGGC-AATTTGCCCAGATGTATCGATACA-TTTTAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATT-AAA
114066 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
*
114118 TGTATCGATACATGCAAGCAA
1 TGTATCGATACATGCAGGCAA
114139 CTTTTCATAT
Statistics
Matches: 69, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
51 19 0.28
52 47 0.68
53 3 0.04
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
Found at i:127751 original size:25 final size:25
Alignment explanation
Indices: 127694--127763 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
127684 ATTCGGTTTG
*
127694 TTTTTATTTATATAATATATATTAA
1 TTTTTATTTATATAAAATATATTAA
* *
127719 ATTATATTTATATAAAATATTATT-A
1 TTTTTATTTATATAAAATA-TATTAA
127744 TTTTTATTATATATAAAATA
1 TTTTTATT-TATATAAAATA
127764 AATATATAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
25 23 0.61
26 15 0.39
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (25 bp):
TTTTTATTTATATAAAATATATTAA
Found at i:127863 original size:25 final size:24
Alignment explanation
Indices: 127820--127889 Score: 61
Period size: 27 Copynumber: 2.7 Consensus size: 24
127810 TTATATTTTA
*
127820 AAATTGAATAAAAAT-TATTAAATTAT
1 AAATT-AA-AAAAATATATTAAA-AAT
127846 AAATTAAAAAAATATATTTTTAAAAAT
1 AAATTAAAAAAATATA---TTAAAAAT
*
127873 AAATTAAAAATATATAT
1 AAATTAAAAAAATATAT
127890 AATATAGATG
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
24 7 0.18
25 4 0.11
26 5 0.13
27 17 0.45
28 5 0.13
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.37
Consensus pattern (24 bp):
AAATTAAAAAAATATATTAAAAAT
Found at i:133978 original size:30 final size:30
Alignment explanation
Indices: 133942--134037 Score: 95
Period size: 30 Copynumber: 3.2 Consensus size: 30
133932 GTGGGGGCGC
*
133942 TGGTGGAGGGTTTGGTGGTGGCGGTGGCCT
1 TGGTGGAGGGTTTGGTGGTGGAGGTGGCCT
* **
133972 TGGTGGA-GGTGCTGGTGGTGGAGGTGGTGT
1 TGGTGGAGGGT-TTGGTGGTGGAGGTGGCCT
* * * *
134002 TGGTGGAGGTTTTGGGGGTGGTGGAGGCCT
1 TGGTGGAGGGTTTGGTGGTGGAGGTGGCCT
*
134032 AGGTGG
1 TGGTGG
134038 CGGCGGTGGC
Statistics
Matches: 52, Mismatches: 12, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
29 3 0.06
30 47 0.90
31 2 0.04
ACGTcount: A:0.06, C:0.06, G:0.58, T:0.29
Consensus pattern (30 bp):
TGGTGGAGGGTTTGGTGGTGGAGGTGGCCT
Found at i:133990 original size:15 final size:15
Alignment explanation
Indices: 133972--134097 Score: 64
Period size: 15 Copynumber: 8.2 Consensus size: 15
133962 GCGGTGGCCT
133972 TGGTGGAGGTGCTGG
1 TGGTGGAGGTGCTGG
* *
133987 TGGTGGAGGTGGTGT
1 TGGTGGAGGTGCTGG
**
134002 TGGTGGAGGTTTTGGGGG
1 TGGTGGAGG---TGCTGG
*
134020 TGGTGGAGG-CCTAGG
1 TGGTGGAGGTGCT-GG
* *
134035 TGGCGGCGGTGGCCT--
1 TGGTGGAGGT-G-CTGG
*
134050 CGGTGGAGGTGCTGG
1 TGGTGGAGGTGCTGG
134065 TGGTGGAGGTGGTCTGG
1 TGGTGGAGGT-G-CTGG
*
134082 -GG-GGCGGTGCTGG
1 TGGTGGAGGTGCTGG
134095 TGG
1 TGG
134098 AGGACTAGGT
Statistics
Matches: 84, Mismatches: 15, Indels: 25
0.68 0.12 0.20
Matches are distributed among these distances:
13 6 0.07
14 4 0.05
15 52 0.62
16 3 0.04
17 4 0.05
18 15 0.18
ACGTcount: A:0.06, C:0.10, G:0.60, T:0.25
Consensus pattern (15 bp):
TGGTGGAGGTGCTGG
Found at i:134067 original size:30 final size:30
Alignment explanation
Indices: 134033--134097 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 30
134023 TGGAGGCCTA
* *
134033 GGTGGCGGCGGTGGCCTCGGTGGAGGTGCT
1 GGTGGCGGAGGTGGCCTCGGGGGAGGTGCT
* * * *
134063 GGTGGTGGAGGTGGTCTGGGGGGCGGTGCT
1 GGTGGCGGAGGTGGCCTCGGGGGAGGTGCT
134093 GGTGG
1 GGTGG
134098 AGGACTAGGT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.03, C:0.14, G:0.62, T:0.22
Consensus pattern (30 bp):
GGTGGCGGAGGTGGCCTCGGGGGAGGTGCT
Found at i:134157 original size:36 final size:36
Alignment explanation
Indices: 134117--134250 Score: 124
Period size: 36 Copynumber: 3.6 Consensus size: 36
134107 TGGTGGCGCA
134117 GGAGGAGGACTAGGTGGTGGCCATGGGCTTGGAGGT
1 GGAGGAGGACTAGGTGGTGGCCATGGGCTTGGAGGT
* * * * * *
134153 GGAGGCGGATTAGGTGGTGGTGCAGGAGTTGGATTGGGTGGT
1 GGAGGAGGACTAGGTGGT-G-GC--CA-TGGGCTT-GGAGGT
* *
134195 GGTGGAGGACTTGGTGGTGGCCATGGGCTTGGAGGT
1 GGAGGAGGACTAGGTGGTGGCCATGGGCTTGGAGGT
* *
134231 GGAGGCGGATTAGGTGGTGG
1 GGAGGAGGACTAGGTGGTGG
134251 TGCAGGGGCT
Statistics
Matches: 74, Mismatches: 18, Indels: 12
0.71 0.17 0.12
Matches are distributed among these distances:
36 37 0.50
37 6 0.08
38 3 0.04
40 3 0.04
41 6 0.08
42 19 0.26
ACGTcount: A:0.14, C:0.08, G:0.54, T:0.23
Consensus pattern (36 bp):
GGAGGAGGACTAGGTGGTGGCCATGGGCTTGGAGGT
Found at i:134180 original size:24 final size:24
Alignment explanation
Indices: 134153--134203 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
134143 GCTTGGAGGT
134153 GGAGGCGGATTAGGTGGTGGTGCA
1 GGAGGCGGATTAGGTGGTGGTGCA
** * *
134177 GGAGTTGGATTGGGTGGTGGTGGA
1 GGAGGCGGATTAGGTGGTGGTGCA
134201 GGA
1 GGA
134204 CTTGGTGGTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.16, C:0.04, G:0.57, T:0.24
Consensus pattern (24 bp):
GGAGGCGGATTAGGTGGTGGTGCA
Found at i:134202 original size:78 final size:77
Alignment explanation
Indices: 134120--134807 Score: 538
Period size: 78 Copynumber: 9.1 Consensus size: 77
134110 TGGCGCAGGA
* *
134120 GGAGGACTAGGTGGTGGCCATGGGCTTGGAGGTGGAGGCGGATTAGGTGGTGGTGCAGGAGTTGG
1 GGAGGACTTGGTGGTGGCCATGGGCTTGGAGGTGGAGGCGGATTAGGTGGTGGTGCAGGAGGTGG
134185 ATTGGGTGGTGGT
66 ATT-GGTGGTGGT
134198 GGAGGACTTGGTGGTGGCCATGGGCTTGGAGGTGGAGGCGGATTAGGTGGTGGTGCAGG-GGCTG
1 GGAGGACTTGGTGGTGGCCATGGGCTTGGAGGTGGAGGCGGATTAGGTGGTGGTGCAGGAGG-TG
*
134262 GCCTTGGTGGTGGT
65 G-ATTGGTGGTGGT
* ** *** * * * *
134276 GCAGGAGGTGGATTGGGTGGTGGTGGG---GGACTTGGTGGTGGC-CA-TGGGCTTGGAGGT---
1 GGAGGACTTGG--T-GGTGGCCATGGGCTTGGA---GGTGGAGGCGGATTAGG--TGGTGGTGCA
*
134333 GGAGGCGGACTTGGTGGTGGT
58 GGAGGTGGA-TTGGTGGTGGT
* * * *
134354 GG-TG-CATGGTGGTGGCCATGGGCTTGGAGGTGGAGGCGGATTAGGTGGTGGTACAGGAGGCGG
1 GGAGGACTTGGTGGTGGCCATGGGCTTGGAGGTGGAGGCGGATTAGGTGGTGGTGCAGGAGGTGG
134417 ATTGGGTGGTGGT
66 ATT-GGTGGTGGT
* *
134430 GGAGGACTTGGTGGTGGCCATGGGC-T-----TGGAGGCGGATTAGGTGGTGGTGCCGGGGGTGG
1 GGAGGACTTGGTGGTGGCCATGGGCTTGGAGGTGGAGGCGGATTAGGTGGTGGTGCAGGAGGTGG
*
134489 CCTTGGTGGTGG-
66 -ATTGGTGGTGGT
** * * *** * * * * * ** *
134501 CCATGGGCTTGGAGGTGGAGGTGGAC-T--AGGTGGTGGC-CA-T-GG-GCATGGAGTTGGAGGC
1 GGA-GGACTTGGTGGTGGCCATGGGCTTGGAGGTGGAGGCGGATTAGGTG-GTGGTGCAGGAGGT
134559 GGATTCGGTGGTGGT
64 GGATT-GGTGGTGGT
* * *
134574 ----G-C-AGGTGGTGGCCATGGGCTTGGAGGTGGAGGCGGAGTAGGTGGTGGTGCAGGGGGTGG
1 GGAGGACTTGGTGGTGGCCATGGGCTTGGAGGTGGAGGCGGATTAGGTGGTGGTGCAGGAGGTGG
*
134633 CCTTGGTGGTGGT
66 -ATTGGTGGTGGT
* * *
134646 GCAGGACTTGGTGGTGGCCATGGGCTTGGAGGGGGAGGGGGATTAGGTGGTGGTGCAGGAGGTGG
1 GGAGGACTTGGTGGTGGCCATGGGCTTGGAGGTGGAGGCGGATTAGGTGGTGGTGCAGGAGGTGG
134711 ATTGGGTGGTGGT
66 ATT-GGTGGTGGT
* * * *
134724 GGAGGACTTGGTGGTGGCCATGGGCTTAGAGGTGGAGGGGGATTAGGTGTTGGTGCAGGGGGTGG
1 GGAGGACTTGGTGGTGGCCATGGGCTTGGAGGTGGAGGCGGATTAGGTGGTGGTGCAGGAGGTGG
*
134789 CCTTGGTGGTGGT
66 -ATTGGTGGTGGT
*
134802 GCAGGA
1 GGAGGA
134808 GGTGGATTGG
Statistics
Matches: 485, Mismatches: 78, Indels: 94
0.74 0.12 0.14
Matches are distributed among these distances:
66 11 0.02
67 2 0.00
68 1 0.00
69 9 0.02
70 1 0.00
71 5 0.01
72 95 0.20
73 29 0.06
74 3 0.01
75 11 0.02
76 27 0.06
77 7 0.01
78 250 0.52
79 9 0.02
80 2 0.00
81 23 0.05
ACGTcount: A:0.12, C:0.10, G:0.55, T:0.24
Consensus pattern (77 bp):
GGAGGACTTGGTGGTGGCCATGGGCTTGGAGGTGGAGGCGGATTAGGTGGTGGTGCAGGAGGTGG
ATTGGTGGTGGT
Found at i:134208 original size:24 final size:24
Alignment explanation
Indices: 134159--134208 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
134149 AGGTGGAGGC
*
134159 GGATTAGGTGGTGGTGCAGGAGTT
1 GGATTAGGTGGTGGTGCAGGACTT
* *
134183 GGATTGGGTGGTGGTGGAGGACTT
1 GGATTAGGTGGTGGTGCAGGACTT
134207 GG
1 GG
134209 TGGTGGCCAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.14, C:0.04, G:0.54, T:0.28
Consensus pattern (24 bp):
GGATTAGGTGGTGGTGCAGGACTT
Found at i:134271 original size:102 final size:101
Alignment explanation
Indices: 134165--134965 Score: 693
Period size: 102 Copynumber: 7.7 Consensus size: 101
134155 AGGCGGATTA
*
134165 GGTGGTGGTGCAGGAGTTGGATTGGGTGGTGGTGGAGGACTTGGTGGTGGCCATGGGCTTGGAGG
1 GGTGGTGGTGCAGGAGGTGGATTGGGTGGTGGTGGAGGACTTGGTGGTGGCCATGGGCTTGGAGG
134230 TGGAGGCGGATTAGGTGGTGGTGCAGGGGCTGGCCTT
66 TGGAGGCGGATTAGGTGGTGGTGCAGGGG-TGGCCTT
*
134267 GGTGGTGGTGCAGGAGGTGGATTGGGTGGTGGTGGGGGACTTGGTGGTGGCCATGGGCTTGGAGG
1 GGTGGTGGTGCAGGAGGTGGATTGGGTGGTGGTGGAGGACTTGGTGGTGGCCATGGGCTTGGAGG
* *
134332 TGGAGGCGGACTTGGTGGTGGTGGTGCATGGTGGTGGCCAT
66 TGGAGGCGGA-TT--AGGTGGTGGTGCA-GG-GGTGGCCTT
* * ** * * * *
134373 GG-GCTTGGAGGTGGAGGCGGATTAGGTGGTGGTACAGGAGGCGGATTGGGTGGTGGTGGAGGAC
1 GGTG-GTGGTGCAGGAGGTGGATTGGGTGGTGGT---GGA---GGACT---TGGTGGT---GGCC
* * *
134437 TTGGTG-GTGGCCATGGGCTTGGAGGCGGATTAGGTGGTGGTGCCGGGGGTGGCCTT
53 ATGG-GCTTGG--A--GG--TGGAGGCGGATTAGGTGGTGGTG-CAGGGGTGGCCTT
* * * * * * * * *
134493 GGTGGT-G-GC--CATG-GGCTT-GGAGGTGGAGGTGGACTAGGTGGTGGCCATGGGCATGGAGT
1 GGTGGTGGTGCAGGAGGTGGATTGGGTGGTGGTGGAGGACTTGGTGGTGGCCATGGGCTTGGAGG
* *
134552 TGGAGGCGGATTCGGTGGTGGTGCAGGTGGTGGCCATG
66 TGGAGGCGGATTAGGTGGTGGTGCAGG-GGTGGCC-TT
* * * * ** * * * * *
134590 GGCTTGGAGGTGGAGGCGGAGTAGG-TGGTGGTGCAGGGGGTGGCCTTGGTGGTGGTGCA-GGAC
1 GG--TGGTGGTGCAGG-AG-GT-GGATTG-GGTGGTGGTGGAGGACTTGGTGGTGG-CCATGGGC
* * * * *
134653 TTGGTGGTGGCCATG-GGCTT-GGAGG-GG-G-A-GGG-GG-ATT
59 TTGGAGGTGG--AGGCGGATTAGGTGGTGGTGCAGGGGTGGCCTT
*
134690 AGGTGGTGGTGCAGGAGGTGGATTGGGTGGTGGTGGAGGACTTGGTGGTGGCCATGGGCTTAGAG
1 -GGTGGTGGTGCAGGAGGTGGATTGGGTGGTGGTGGAGGACTTGGTGGTGGCCATGGGCTTGGAG
* *
134755 GTGGAGGGGGATTAGGTGTTGGTGCAGGGGGTGGCCTT
65 GTGGAGGCGGATTAGGTGGTGGTGCA-GGGGTGGCCTT
134793 GGTGGTGGTGCAGGAGGTGGATTGGGTGGTGGTGGAGGACTTGGTGGTGGCCATGGGCTTGGAGG
1 GGTGGTGGTGCAGGAGGTGGATTGGGTGGTGGTGGAGGACTTGGTGGTGGCCATGGGCTTGGAGG
*
134858 TGGAGGGGGATTAGGTGGTGGTGCAGGGGGTGGCCTT
66 TGGAGGCGGATTAGGTGGTGGTGCA-GGGGTGGCCTT
134895 GGTGGTGGTGCAGGAGGTGGATTGGGTGGTGGTGGAGGACTTGGTGGTGGCCATGGGCTTGGAGG
1 GGTGGTGGTGCAGGAGGTGGATTGGGTGGTGGTGGAGGACTTGGTGGTGGCCATGGGCTTGGAGG
134960 TGGAGG
66 TGGAGG
134966 TGGAGGTGGA
Statistics
Matches: 565, Mismatches: 77, Indels: 114
0.75 0.10 0.15
Matches are distributed among these distances:
94 2 0.00
95 9 0.02
96 66 0.12
97 9 0.02
98 3 0.01
99 14 0.02
100 3 0.01
101 7 0.01
102 257 0.45
103 6 0.01
104 1 0.00
105 21 0.04
106 35 0.06
107 6 0.01
108 38 0.07
109 8 0.01
110 2 0.00
111 2 0.00
112 4 0.01
114 7 0.01
115 11 0.02
116 2 0.00
118 10 0.02
119 2 0.00
120 12 0.02
121 13 0.02
122 3 0.01
123 2 0.00
124 10 0.02
ACGTcount: A:0.11, C:0.09, G:0.55, T:0.24
Consensus pattern (101 bp):
GGTGGTGGTGCAGGAGGTGGATTGGGTGGTGGTGGAGGACTTGGTGGTGGCCATGGGCTTGGAGG
TGGAGGCGGATTAGGTGGTGGTGCAGGGGTGGCCTT
Found at i:134294 original size:24 final size:23
Alignment explanation
Indices: 134231--134300 Score: 79
Period size: 24 Copynumber: 2.9 Consensus size: 23
134221 GCTTGGAGGT
*
134231 GGAGGCGGATTAGGTGGTGGTGCA
1 GGAGGTGGATT-GGTGGTGGTGCA
*
134255 GG-GGCTGGCCTTGGTGGTGGTGCA
1 GGAGG-TGG-ATTGGTGGTGGTGCA
134279 GGAGGTGGATTGGGTGGTGGTG
1 GGAGGTGGATT-GGTGGTGGTG
134301 GGGGACTTGG
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
23 4 0.10
24 31 0.79
25 4 0.10
ACGTcount: A:0.10, C:0.09, G:0.57, T:0.24
Consensus pattern (23 bp):
GGAGGTGGATTGGTGGTGGTGCA
Found at i:134312 original size:18 final size:18
Alignment explanation
Indices: 134291--134355 Score: 60
Period size: 18 Copynumber: 3.6 Consensus size: 18
134281 AGGTGGATTG
134291 GGTGGTGGTGGGGGACTT
1 GGTGGTGGTGGGGGACTT
***
134309 GGTGGTGGCCATGGG-CTT
1 GGTGGTGG-TGGGGGACTT
* * *
134327 GGAGGTGGAGGCGGACTT
1 GGTGGTGGTGGGGGACTT
134345 GGTGGTGGTGG
1 GGTGGTGGTGG
134356 TGCATGGTGG
Statistics
Matches: 35, Mismatches: 10, Indels: 4
0.71 0.20 0.08
Matches are distributed among these distances:
17 2 0.06
18 30 0.86
19 3 0.09
ACGTcount: A:0.08, C:0.09, G:0.58, T:0.25
Consensus pattern (18 bp):
GGTGGTGGTGGGGGACTT
Found at i:134433 original size:21 final size:21
Alignment explanation
Indices: 134382--134434 Score: 70
Period size: 24 Copynumber: 2.4 Consensus size: 21
134372 TGGGCTTGGA
134382 GGTGGAGGCGGATTAGGTGGT
1 GGTGGAGGCGGATTAGGTGGT
*
134403 GGTACAGGAGGCGGATTGGGTGGT
1 GGT---GGAGGCGGATTAGGTGGT
134427 GGTGGAGG
1 GGTGGAGG
134435 ACTTGGTGGT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
21 8 0.29
24 20 0.71
ACGTcount: A:0.15, C:0.06, G:0.58, T:0.21
Consensus pattern (21 bp):
GGTGGAGGCGGATTAGGTGGT
Found at i:134478 original size:48 final size:49
Alignment explanation
Indices: 134409--134515 Score: 135
Period size: 54 Copynumber: 2.1 Consensus size: 49
134399 TGGTGGTACA
*
134409 GGAGGCGGATTGGGTGGTGGT-GGAGGACTTGGTGGTGGCCATGGGCTT
1 GGAGGCGGATTAGGTGGTGGTGGGAGGACTTGGTGGTGGCCATGGGCTT
* *
134457 GGAGGCGGATTAGGTGGTGGTGCCGGGGGTGGCCTTGGTGGTGGCCATGGGCTT
1 GGAGGCGGATTAGGTGGTGGT-----GGGAGGACTTGGTGGTGGCCATGGGCTT
134511 GGAGG
1 GGAGG
134516 TGGAGGTGGA
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
48 20 0.40
54 30 0.60
ACGTcount: A:0.09, C:0.12, G:0.55, T:0.23
Consensus pattern (49 bp):
GGAGGCGGATTAGGTGGTGGTGGGAGGACTTGGTGGTGGCCATGGGCTT
Found at i:134511 original size:18 final size:18
Alignment explanation
Indices: 134490--134544 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 18
134480 CGGGGGTGGC
134490 CTTGGTGGTGGCCATGGG
1 CTTGGTGGTGGCCATGGG
* *** *
134508 CTTGGAGGTGGAGGTGGA
1 CTTGGTGGTGGCCATGGG
*
134526 CTAGGTGGTGGCCATGGG
1 CTTGGTGGTGGCCATGGG
134544 C
1 C
134545 ATGGAGTTGG
Statistics
Matches: 26, Mismatches: 11, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.11, C:0.15, G:0.51, T:0.24
Consensus pattern (18 bp):
CTTGGTGGTGGCCATGGG
Found at i:134524 original size:36 final size:36
Alignment explanation
Indices: 134484--134572 Score: 115
Period size: 36 Copynumber: 2.5 Consensus size: 36
134474 TGGTGCCGGG
* * *
134484 GGTGGCCTTGGTGGTGGCCATGGGCTTGGAGGTGGA
1 GGTGGACTAGGTGGTGGCCATGGGCATGGAGGTGGA
*
134520 GGTGGACTAGGTGGTGGCCATGGGCATGGAGTTGGA
1 GGTGGACTAGGTGGTGGCCATGGGCATGGAGGTGGA
* * *
134556 GGCGGATTCGGTGGTGG
1 GGTGGACTAGGTGGTGG
134573 TGCAGGTGGT
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
36 46 1.00
ACGTcount: A:0.11, C:0.12, G:0.53, T:0.24
Consensus pattern (36 bp):
GGTGGACTAGGTGGTGGCCATGGGCATGGAGGTGGA
Found at i:134572 original size:48 final size:48
Alignment explanation
Indices: 134520--134634 Score: 151
Period size: 48 Copynumber: 2.4 Consensus size: 48
134510 TGGAGGTGGA
* * *
134520 GGTGG-ACTAGGTGGTGGCCATGGGCATGGAGTTGGAGGCGGATTCGGT
1 GGTGGTAC-AGGTGGTGGCCATGGGCATGGAGGTGGAGGCGGAGTAGGT
* *
134568 GGTGGTGCAGGTGGTGGCCATGGGCTTGGAGGTGGAGGCGGAGTAGGT
1 GGTGGTACAGGTGGTGGCCATGGGCATGGAGGTGGAGGCGGAGTAGGT
* *
134616 GGTGGTGCAGGGGGTGGCC
1 GGTGGTACAGGTGGTGGCC
134635 TTGGTGGTGG
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
48 59 0.98
49 1 0.02
ACGTcount: A:0.12, C:0.12, G:0.55, T:0.21
Consensus pattern (48 bp):
GGTGGTACAGGTGGTGGCCATGGGCATGGAGGTGGAGGCGGAGTAGGT
Found at i:134616 original size:36 final size:36
Alignment explanation
Indices: 134576--134772 Score: 99
Period size: 36 Copynumber: 5.1 Consensus size: 36
134566 GTGGTGGTGC
*
134576 AGGTGGTGGCCATGGGCTTGGAGGTGGAGGCGGAGT
1 AGGTGGTGGCCATGGGCTTGGAGGTGGAGGCGGACT
* * * *
134612 AGGTGGTGGTGCAGGGGGTGGCCTTGGTGGTGG-TGCAGGACT
1 AGGTGGTGG-CCA-----TGGGCTTGGAGGTGGAGGC-GGACT
* * * *
134654 TGGTGGTGGCCATGGGCTTGGAGGGGGAGGGGGATT
1 AGGTGGTGGCCATGGGCTTGGAGGTGGAGGCGGACT
* * * * * *
134690 AGGTGGTGGTGCAGGAGGTGGATTGGGTGGTGGTGGAGGACT
1 AGGTGGT-G-GC--CATG-GGCTT-GGAGGTGGAGGCGGACT
* * * *
134732 TGGTGGTGGCCATGGGCTTAGAGGTGGAGGGGGATT
1 AGGTGGTGGCCATGGGCTTGGAGGTGGAGGCGGACT
134768 AGGTG
1 AGGTG
134773 TTGGTGCAGG
Statistics
Matches: 115, Mismatches: 32, Indels: 28
0.66 0.18 0.16
Matches are distributed among these distances:
36 47 0.41
37 8 0.07
38 4 0.03
40 4 0.03
41 9 0.08
42 43 0.37
ACGTcount: A:0.13, C:0.09, G:0.56, T:0.23
Consensus pattern (36 bp):
AGGTGGTGGCCATGGGCTTGGAGGTGGAGGCGGACT
Found at i:134712 original size:24 final size:24
Alignment explanation
Indices: 134679--134729 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
134669 GCTTGGAGGG
134679 GGAGGGGGATTAGGTGGTGGTGCA
1 GGAGGGGGATTAGGTGGTGGTGCA
* * *
134703 GGAGGTGGATTGGGTGGTGGTGGA
1 GGAGGGGGATTAGGTGGTGGTGCA
134727 GGA
1 GGA
134730 CTTGGTGGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.16, C:0.02, G:0.61, T:0.22
Consensus pattern (24 bp):
GGAGGGGGATTAGGTGGTGGTGCA
Found at i:134757 original size:48 final size:48
Alignment explanation
Indices: 134704--134963 Score: 163
Period size: 48 Copynumber: 5.2 Consensus size: 48
134694 GGTGGTGCAG
134704 GAGGTGGATTGGGTGGTGGTGGAGGACTTGGTGGTGGCCATGGGCTTA
1 GAGGTGGATTGGGTGGTGGTGGAGGACTTGGTGGTGGCCATGGGCTTA
** * * * * * *
134752 GAGGTGGAGGGGGATTAGGTGTTGG-TG-C-AGGGGGTGGCCTTGGTGGTGGTGCA
1 GAGGTGGATTGGG--T-GGTGGTGGAGGACTTGGTGGTGGCCATGG-GCT--T--A
*
134805 GGAGGTGGATTGGGTGGTGGTGGAGGACTTGGTGGTGGCCATGGGCTTG
1 -GAGGTGGATTGGGTGGTGGTGGAGGACTTGGTGGTGGCCATGGGCTTA
** * * * * *
134854 GAGGTGGAGGGGGATTAGGTGGTGG-TG-C-AGGGGGTGGCCTTGGTGGTGGTGCA
1 GAGGTGGATTGGG--T-GGTGGTGGAGGACTTGGTGGTGGCCATGG-GCT--T--A
*
134907 GGAGGTGGATTGGGTGGTGGTGGAGGACTTGGTGGTGGCCATGGGCTTG
1 -GAGGTGGATTGGGTGGTGGTGGAGGACTTGGTGGTGGCCATGGGCTTA
134956 GAGGTGGA
1 GAGGTGGA
134964 GGTGGAGGTG
Statistics
Matches: 155, Mismatches: 33, Indels: 48
0.66 0.14 0.20
Matches are distributed among these distances:
48 54 0.35
49 6 0.04
50 4 0.03
51 34 0.22
52 4 0.03
53 7 0.05
54 46 0.30
ACGTcount: A:0.12, C:0.08, G:0.56, T:0.25
Consensus pattern (48 bp):
GAGGTGGATTGGGTGGTGGTGGAGGACTTGGTGGTGGCCATGGGCTTA
Found at i:134767 original size:54 final size:54
Alignment explanation
Indices: 134703--134969 Score: 256
Period size: 54 Copynumber: 5.2 Consensus size: 54
134693 TGGTGGTGCA
*
134703 GGAGGTGGATTGGGTGGTGGTGGAGGACTTGGTGGTGGCCATGGGCTTAGAGGT
1 GGAGGTGGATTGGGTGGTGGTGGAGGACTTGGTGGTGGCCATGGGCTTGGAGGT
* * * * * * * **
134757 GGAGGGGGATTAGGTGTTGGTGCA-G----GG-GGTGGCCTTGGTG-GTGGTGCA
1 GGAGGTGGATTGGGTGGTGGTGGAGGACTTGGTGGTGGCCATGG-GCTTGGAGGT
134805 GGAGGTGGATTGGGTGGTGGTGGAGGACTTGGTGGTGGCCATGGGCTTGGAGGT
1 GGAGGTGGATTGGGTGGTGGTGGAGGACTTGGTGGTGGCCATGGGCTTGGAGGT
* * * * * * **
134859 GGAGGGGGATTAGGTGGTGGTGCA-G----GG-GGTGGCCTTGGTG-GTGGTGCA
1 GGAGGTGGATTGGGTGGTGGTGGAGGACTTGGTGGTGGCCATGG-GCTTGGAGGT
134907 GGAGGTGGATTGGGTGGTGGTGGAGGACTTGGTGGTGGCCATGGGCTTGGAGGT
1 GGAGGTGGATTGGGTGGTGGTGGAGGACTTGGTGGTGGCCATGGGCTTGGAGGT
134961 GGAGGTGGA
1 GGAGGTGGA
134970 GGTGGAGGCG
Statistics
Matches: 162, Mismatches: 35, Indels: 32
0.71 0.15 0.14
Matches are distributed among these distances:
48 68 0.42
49 8 0.05
53 8 0.05
54 78 0.48
ACGTcount: A:0.12, C:0.07, G:0.56, T:0.25
Consensus pattern (54 bp):
GGAGGTGGATTGGGTGGTGGTGGAGGACTTGGTGGTGGCCATGGGCTTGGAGGT
Found at i:134801 original size:24 final size:24
Alignment explanation
Indices: 134757--134933 Score: 101
Period size: 24 Copynumber: 7.1 Consensus size: 24
134747 GCTTAGAGGT
* * *
134757 GGAGGGGGATTAGGTGTTGGTGCA
1 GGAGGTGGATTGGGTGGTGGTGCA
* *
134781 GGGGGTGGCCTT-GGTGGTGGTGCA
1 GGAGGTGG-ATTGGGTGGTGGTGCA
*
134805 GGAGGTGGATTGGGTGGTGGTGGA
1 GGAGGTGGATTGGGTGGTGGTGCA
* * **
134829 GGACTTGGTGG--TGGCCATGGGCTTGGAGGT
1 GGA---GGTGGATTGG--GT-GG--TGGTGCA
* *
134859 GGAGGGGGATTAGGTGGTGGTGCA
1 GGAGGTGGATTGGGTGGTGGTGCA
* *
134883 GGGGGTGGCCTT-GGTGGTGGTGCA
1 GGAGGTGG-ATTGGGTGGTGGTGCA
*
134907 GGAGGTGGATTGGGTGGTGGTGGA
1 GGAGGTGGATTGGGTGGTGGTGCA
134931 GGA
1 GGA
134934 CTTGGTGGTG
Statistics
Matches: 117, Mismatches: 22, Indels: 28
0.70 0.13 0.17
Matches are distributed among these distances:
23 4 0.03
24 81 0.69
25 7 0.06
26 2 0.02
27 11 0.09
28 2 0.02
29 2 0.02
30 8 0.07
ACGTcount: A:0.11, C:0.07, G:0.58, T:0.24
Consensus pattern (24 bp):
GGAGGTGGATTGGGTGGTGGTGCA
Found at i:135168 original size:42 final size:42
Alignment explanation
Indices: 135122--135235 Score: 113
Period size: 42 Copynumber: 2.6 Consensus size: 42
135112 GTGGAGGAGT
*
135122 AGGTGGAGGAC-TTGGGGGTGGTGGAGGAGGTGGCTTTGGTGG
1 AGGTGGAGG-CTTTGGGGGTGGTGGAGGAGCTGGCTTTGGTGG
* * * *
135164 AGGTGGCGGCTTTGGTGGTGGTGGAGGTGCTGGCTTTGGCGG
1 AGGTGGAGGCTTTGGGGGTGGTGGAGGAGCTGGCTTTGGTGG
* * *
135206 CGGAGCAGGCTTTGGTGCTGGTGGTGGAGG
1 AGGTGGAGGCTTTGG-G--GGTGGTGGAGG
135236 TGGACACTAA
Statistics
Matches: 58, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
41 1 0.02
42 46 0.79
45 11 0.19
ACGTcount: A:0.09, C:0.10, G:0.56, T:0.25
Consensus pattern (42 bp):
AGGTGGAGGCTTTGGGGGTGGTGGAGGAGCTGGCTTTGGTGG
Found at i:135186 original size:18 final size:18
Alignment explanation
Indices: 135140--135187 Score: 69
Period size: 18 Copynumber: 2.7 Consensus size: 18
135130 GACTTGGGGG
* *
135140 TGGTGGAGGAGGTGGCTT
1 TGGTGGAGGTGGCGGCTT
135158 TGGTGGAGGTGGCGGCTT
1 TGGTGGAGGTGGCGGCTT
*
135176 TGGTGGTGGTGG
1 TGGTGGAGGTGG
135188 AGGTGCTGGC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.06, C:0.06, G:0.58, T:0.29
Consensus pattern (18 bp):
TGGTGGAGGTGGCGGCTT
Found at i:136468 original size:17 final size:18
Alignment explanation
Indices: 136430--136470 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
136420 TTTATTCTAT
*
136430 TTTTATTAATTTAATTAAA
1 TTTT-TTAATTTAATAAAA
136449 TTTTTTAATTT-ATAAAA
1 TTTTTTAATTTAATAAAA
136466 TTTTT
1 TTTTT
136471 AGTTCTACAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 10 0.48
18 7 0.33
19 4 0.19
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
TTTTTTAATTTAATAAAA
Found at i:136517 original size:9 final size:9
Alignment explanation
Indices: 136503--136540 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
136493 AAATAAATTT
136503 TTAATTAAA
1 TTAATTAAA
*
136512 TTAATTAGA
1 TTAATTAAA
136521 TTAATT-AA
1 TTAATTAAA
136529 TTCAATTAAA
1 TT-AATTAAA
136539 TT
1 TT
136541 TATTTAACAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
8 3 0.12
9 18 0.72
10 4 0.16
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (9 bp):
TTAATTAAA
Found at i:140101 original size:39 final size:39
Alignment explanation
Indices: 140014--140101 Score: 90
Period size: 39 Copynumber: 2.3 Consensus size: 39
140004 CTTTCAGTTC
* **
140014 AATACATGTCCATTAAAGTCATGTTGGAACCTCTCTATT
1 AATACATGTCCATCAAAGTCATAATGGAACCTCTCTATT
* * *
140053 GATATATGTCCATCAAAGTCA-AATGAGAACCT-TCTTCTT
1 AATACATGTCCATCAAAGTCATAATG-GAACCTCTC-TATT
140092 AATACATGTC
1 AATACATGTC
140102 TTTTGAAGTC
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
38 4 0.10
39 35 0.90
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.34
Consensus pattern (39 bp):
AATACATGTCCATCAAAGTCATAATGGAACCTCTCTATT
Found at i:141230 original size:498 final size:492
Alignment explanation
Indices: 140252--141489 Score: 1410
Period size: 500 Copynumber: 2.5 Consensus size: 492
140242 TCATCGATTA
* * *
140252 TTTTAAATAAATTAATCATAATTTTT-AATTTTCAACAAGGAATAAAACTTTTGTATTTCTTCAG
1 TTTTTAATAAATAAATCATAATTTTTGAATTTTCAACAAGAAATAAAACTTTTGTA-TTCTTCAG
* * * * * *
140316 GTTTACTAGAGAGGTATAAAAAAAAATTCAATTTTCAAAATTGATGGAAACCTCGATTTACTTGA
65 GTTT-TTAGATAGGTACAAAAAATATTTCAATTTTCAAAATTAAT-GAAACCTCGATTTACTTGA
* * * * *
140381 AATCGAAAAAATAACATTAATTTTAAATATTTCAAAACATGAAAATTATAATTAAATACTAAAAA
128 AACCAAAAAAATAATATTAATTCTAAATATTTCAAAACATGAAAATTATAATTAAATACCAAAAA
* * * * *
140446 ATTAAAACTAA-TTTAAATTGTGAATAAGGATAACATGTAATTAATCTGTATCATTTTACAGGAA
193 ATTAAAACCAACTTT-AATCGCGAATAAGGATAACATGTAATTAATATGTATCATCTTACAGGAA
* *
140510 TCATAAAAGAGAAATGTCTCACTTTGTACGTAACTGACTCCCGAAGTTCTTTTCATATAAATCTC
257 TCACAAAAGAGAAATGTCTCACTTTGTACGTAACTGACT-CCGAAGTCCTTTTCATATAAATCTC
* * * *
140575 TGGTTAATATGCAGGTTTCGGAGTTTATTGTGAAAAAAGTATGTAATTTCTTAAAACAATCTCAA
321 TAGTTAATATGCAAGTTTAGGAGTTTATTGTGAAAAAAGCATGTAATTTCTTAAAACAATCTCAA
* * *
140640 GTGATTTTAAAATAAAATCCGAAGTAATATCATCAAGTTAAAATAGTCCATAAAAATGCTTTTAA
386 GTGATTTTAAAATAAAATCCGAAGCAATATCATCAAGTTAAAATAGTCCACAAAAATGCTTCTAA
140705 CATATAGAAGTTATCTAATTAATTATTTTAAACAAAGAAATATT
451 CATATAGAAGTTATCTAATTAATTATTTTAAACAAAGAAA-A-T
* * *
140749 TTCTTTAA-ACAAGTAAATCATAATTTTTGAATTTTTAACAAGAAATAAAACTTTTATATTCCTC
1 TT-TTTAATA-AA-TAAATCATAATTTTTGAATTTTCAACAAGAAATAAAACTTTTGTATT-CTT
* * *
140813 CAAGTTTTTAGGATAGGTACAAAAAATATTTAAATTTTCAAAATTAATGAAAACCCCGATTTACT
62 CAGGTTTTTA-GATAGGTACAAAAAATATTTCAATTTTCAAAATTAATG-AAACCTCGATTTACT
* *
140878 TGAAACCAAAAAAAT-ATATTAATTCTAAATATTTCAAAGCATGAATATTATAATTAAATACCAA
125 TGAAACCAAAAAAATAATATTAATTCTAAATATTTCAAAACATGAAAATTATAATTAAATACC-A
* * * ** **
140942 AAAAATTAAAACCAACTTTAATCGGGAATAAGGATGACATGTAGTTAATATGTATTGTCTTATGG
189 AAAAATTAAAACCAACTTTAATCGCGAATAAGGATAACATGTAATTAATATGTATCATCTTACAG
* * *
141007 GAATCACAGAAA-AGACATGTCTCACTTT-TGGCGTAA-TCGAGCT-TGAA-TCC-TTTCTATAT
254 GAATCACA-AAAGAGAAATGTCTCACTTTGT-ACGTAACT-GA-CTCCGAAGTCCTTTTC-ATAT
* * * *
141066 AAATCTTTAGTTAATATGCAAGTTTAGGAGTTTGTTTGTG-AAAGAGCATGTAATTTCTTAAAAT
314 AAATCTCTAGTTAATATGCAAGTTTAGGAGTTT-ATTGTGAAAAAAGCATGTAATTTCTTAAAAC
* * ** * ** *
141130 GATCTCAAGTGATTTCT-AAATAAATTTTG-AGACAATATCCTTGAGTTAAAATAGTCCACAAAT
378 AATCTCAAGTGATTT-TAAAATAAAATCCGAAG-CAATATCATCAAGTTAAAATAGTCCACAAAA
* * * * * * *
141193 GTGCTTCTAGCATATGGAAGTTATCTTATTGATTATTTTAAATAAAGGAAAT
441 ATGCTTCTAACATATAGAAGTTATCTAATTAATTATTTTAAACAAAGAAAAT
* * * * *
141245 TTTTTAATAAATAAATCATAATTTTTGAATTTTCAATAAGAAATAGAACTCTTGTGTTCTTTAGG
1 TTTTTAATAAATAAATCATAATTTTTGAATTTTCAACAAGAAATAAAACTTTTGTATTCTTCAGG
* * * *
141310 TTTTTTAAAGTA-GTGCAAAAAAATATTTCAATTTTCATAATTAATCGAAACCTTGATTTACTTG
66 -TTTTTAGA-TAGGTAC-AAAAAATATTTCAATTTTCAAAATTAAT-GAAACCTCGATTTACTTG
*
141374 AAACCAAAAAAATAATGTTAATTCTAAATATTTCAAAACATGAAAATTATAATT-AATACC-AAA
127 AAACCAAAAAAATAATATTAATTCTAAATATTTCAAAACATGAAAATTATAATTAAATACCAAAA
* * * * *
141437 AATTAAAACCATCTTTAATCACGAATTAGGATAAAATATAATTAATATGTATC
192 AATTAAAACCAACTTTAATCGCGAATAAGGATAACATGTAATTAATATGTATC
141490 GTTTTACGAA
Statistics
Matches: 627, Mismatches: 91, Indels: 51
0.82 0.12 0.07
Matches are distributed among these distances:
492 47 0.07
493 8 0.01
494 109 0.17
495 45 0.07
496 4 0.01
497 10 0.02
498 152 0.24
499 72 0.11
500 172 0.27
501 8 0.01
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.36
Consensus pattern (492 bp):
TTTTTAATAAATAAATCATAATTTTTGAATTTTCAACAAGAAATAAAACTTTTGTATTCTTCAGG
TTTTTAGATAGGTACAAAAAATATTTCAATTTTCAAAATTAATGAAACCTCGATTTACTTGAAAC
CAAAAAAATAATATTAATTCTAAATATTTCAAAACATGAAAATTATAATTAAATACCAAAAAATT
AAAACCAACTTTAATCGCGAATAAGGATAACATGTAATTAATATGTATCATCTTACAGGAATCAC
AAAAGAGAAATGTCTCACTTTGTACGTAACTGACTCCGAAGTCCTTTTCATATAAATCTCTAGTT
AATATGCAAGTTTAGGAGTTTATTGTGAAAAAAGCATGTAATTTCTTAAAACAATCTCAAGTGAT
TTTAAAATAAAATCCGAAGCAATATCATCAAGTTAAAATAGTCCACAAAAATGCTTCTAACATAT
AGAAGTTATCTAATTAATTATTTTAAACAAAGAAAAT
Done.