Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2713
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 368274
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
File 1 of 3
Found at i:6499 original size:1 final size:1
Alignment explanation
Indices: 6495--6578 Score: 60
Period size: 1 Copynumber: 84.0 Consensus size: 1
6485 CATTCTTTTT
* * * * * * * * *
6495 AAAAAAAAAAACACAAAAAAAAACAACAAAAAAAAAACACAAAAAAAAGACAAAAAAACAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * *
6560 ACAAAACAAAGAAAAAAAA
1 AAAAAAAAAAAAAAAAAAA
6579 TCTGCTTAAG
Statistics
Matches: 59, Mismatches: 24, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
1 59 1.00
ACGTcount: A:0.86, C:0.12, G:0.02, T:0.00
Consensus pattern (1 bp):
A
Found at i:6514 original size:13 final size:13
Alignment explanation
Indices: 6496--6565 Score: 88
Period size: 13 Copynumber: 5.3 Consensus size: 13
6486 ATTCTTTTTA
6496 AAAAAAAAAACAC
1 AAAAAAAAAACAC
6509 -AAAAAAAAACAAC
1 AAAAAAAAAAC-AC
6522 AAAAAAAAAACAC
1 AAAAAAAAAACAC
* *
6535 AAAAAAAAGACAA
1 AAAAAAAAAACAC
*
6548 AAAAACAAAAAAAC
1 AAAAA-AAAAACAC
6562 AAAA
1 AAAA
6566 CAAAGAAAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
12 10 0.20
13 20 0.41
14 19 0.39
ACGTcount: A:0.86, C:0.13, G:0.01, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAACAC
Found at i:6525 original size:27 final size:27
Alignment explanation
Indices: 6495--6578 Score: 120
Period size: 26 Copynumber: 3.2 Consensus size: 27
6485 CATTCTTTTT
6495 AAAAAAAAAAACACAAAAAAAA-ACAA
1 AAAAAAAAAAACACAAAAAAAAGACAA
*
6521 CAAAAAAAAAACACAAAAAAAAGACAA
1 AAAAAAAAAAACACAAAAAAAAGACAA
*
6548 AAAAACAAAAAA-ACAAAACAAAGA-AA
1 AAAAA-AAAAAACACAAAAAAAAGACAA
6574 AAAAA
1 AAAAA
6579 TCTGCTTAAG
Statistics
Matches: 53, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
26 28 0.53
27 19 0.36
28 6 0.11
ACGTcount: A:0.86, C:0.12, G:0.02, T:0.00
Consensus pattern (27 bp):
AAAAAAAAAAACACAAAAAAAAGACAA
Found at i:6566 original size:13 final size:12
Alignment explanation
Indices: 6495--6578 Score: 82
Period size: 13 Copynumber: 6.9 Consensus size: 12
6485 CATTCTTTTT
6495 AAAAAAAAAAAC
1 AAAAAAAAAAAC
*
6507 ACAAAAAAAAAC
1 AAAAAAAAAAAC
6519 AACAAAAAAAAA-
1 AA-AAAAAAAAAC
* *
6531 ACACAAAAAAA-
1 AAAAAAAAAAAC
* *
6542 AGACAAAAAAAC
1 AAAAAAAAAAAC
6554 AAAAAAACAAAAC
1 AAAAAAA-AAAAC
6567 AAAGAAAAAAAA
1 AAA-AAAAAAAA
6579 TCTGCTTAAG
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
11 18 0.30
12 18 0.30
13 21 0.34
14 4 0.07
ACGTcount: A:0.86, C:0.12, G:0.02, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAAAC
Found at i:6576 original size:11 final size:10
Alignment explanation
Indices: 6497--6576 Score: 67
Period size: 10 Copynumber: 7.9 Consensus size: 10
6487 TTCTTTTTAA
6497 AAAAAAAAAC
1 AAAAAAAAAC
*
6507 ACAAAAAAA-
1 AAAAAAAAAC
* *
6516 AACAACAAA-
1 AAAAAAAAAC
*
6525 AAAAAAACAC
1 AAAAAAAAAC
6535 AAAAAAAAGAC
1 AAAAAAAA-AC
6546 AAAAAAACAA-
1 AAAAAAA-AAC
6556 AAAAACAAAAC
1 AAAAA-AAAAC
6567 AAAGAAAAAA
1 AAA-AAAAAA
6577 AATCTGCTTA
Statistics
Matches: 56, Mismatches: 8, Indels: 11
0.75 0.11 0.15
Matches are distributed among these distances:
9 12 0.21
10 22 0.39
11 19 0.34
12 3 0.05
ACGTcount: A:0.85, C:0.12, G:0.03, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAC
Found at i:7827 original size:55 final size:55
Alignment explanation
Indices: 7578--8187 Score: 725
Period size: 55 Copynumber: 10.9 Consensus size: 55
7568 CTTTTCTCTT
* *
7578 AAAGCCCACACAAGTTGGTAGCA-CTTTCAGTCCTCAAAGAGC-GAGACGCCTTTTC
1 AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAG-GACACC-TTTC
* * *
7633 TTTTAAAGCCCACCCAAGTTGGTGGCACC-TTCAGTCCTCAAAGAGCGGGACGCCTTTTC
1 ----AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACC-TTTC
* ** *
7692 TTTTAAAGCCCACCCAAGTTGGTGGCACC-TTCAGTCCTCAAAGAGCAGGATGCTTTTTCTTCTT
1 ----AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGA--C---ACCTT-TC
* *
7756 AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCCCAAAGAGCAGGACCCCTTTC
1 AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTTC
*
7811 AAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGACACCTTTC
1 AAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAGCAGGACACCTTTC
* * *
7866 AAAGCCCACACAAGTCGGTGGCA-TTTTCCAGTACTCAAAGAGCAGGACACCTCTT-
1 AAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAGCAGGACACCT-TTC
*
7921 AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCCCAAAGAGCAGGACACCTTTC
1 AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTTC
* * *
7976 AAAGCCCACACAAGTTGGTGACA-TTTTCCAGTCCTCAAAGAGCAGGACACCTCTC
1 AAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAGCAGGACACCTTTC
* * *
8031 AAAGCCCACACAAGTTAGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGACGCCTTTC
1 AAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAGCAGGACACCTTTC
*
8086 AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTC
1 AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTTC
* * *
8141 AAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGA
1 AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGA
8188 TACACTTTAT
Statistics
Matches: 503, Mismatches: 33, Indels: 34
0.88 0.06 0.06
Matches are distributed among these distances:
54 8 0.02
55 334 0.66
56 11 0.02
59 99 0.20
60 26 0.05
61 21 0.04
63 2 0.00
64 2 0.00
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (55 bp):
AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTTC
Found at i:8141 original size:26 final size:26
Alignment explanation
Indices: 8059--8141 Score: 69
Period size: 26 Copynumber: 3.1 Consensus size: 26
8049 TGGCATTTTC
8059 CAGTCCTCAAAGAGCAGGACGCCTTT
1 CAGTCCTCAAAGAGCAGGACGCCTTT
* * * ** *
8085 CAAAGCCCACACAAGTTGGTGG-CACCTTT
1 C--AGTCCTCA-AAG-AGCAGGACGCCTTT
8114 CAGTCCTCAAAGAGCAGGACGCCTTT
1 CAGTCCTCAAAGAGCAGGACGCCTTT
8140 CA
1 CA
8142 AAGCCCACAC
Statistics
Matches: 40, Mismatches: 12, Indels: 10
0.65 0.19 0.16
Matches are distributed among these distances:
25 3 0.08
26 12 0.30
27 6 0.15
28 6 0.15
29 10 0.25
30 3 0.08
ACGTcount: A:0.28, C:0.31, G:0.22, T:0.19
Consensus pattern (26 bp):
CAGTCCTCAAAGAGCAGGACGCCTTT
Found at i:9053 original size:19 final size:18
Alignment explanation
Indices: 9028--9095 Score: 65
Period size: 19 Copynumber: 3.9 Consensus size: 18
9018 AATTCAACAA
9028 TTTGTATCGATACATAAG
1 TTTGTATCGATACATAAG
9046 TGTTGTATCGATAC--AA-
1 T-TTGTATCGATACATAAG
*
9062 --TGTATCGATAGATAAG
1 TTTGTATCGATACATAAG
*
9078 TATTGTATCAATACATAA
1 T-TTGTATCGATACATAA
9096 TTAGCTACTG
Statistics
Matches: 40, Mismatches: 3, Indels: 13
0.71 0.05 0.23
Matches are distributed among these distances:
13 10 0.25
15 2 0.05
17 2 0.05
18 1 0.03
19 25 0.62
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (18 bp):
TTTGTATCGATACATAAG
Found at i:9067 original size:32 final size:32
Alignment explanation
Indices: 9030--9092 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
9020 TTCAACAATT
* *
9030 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCAATACAA
*
9062 TGTATCGATAGATAAGTATTGTATCAATACA
1 TGTATCGATACATAAGTATTGTATCAATACA
9093 TAATTAGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.35
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCAATACAA
Found at i:9153 original size:13 final size:13
Alignment explanation
Indices: 9135--9160 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
9125 CATTTTTCTA
9135 TGTATCGATACAT
1 TGTATCGATACAT
9148 TGTATCGATACAT
1 TGTATCGATACAT
9161 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:9155 original size:33 final size:33
Alignment explanation
Indices: 9117--9181 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
9107 CAAGGAAATA
***
9117 TATCGATACATTTTTCTATGTATCGATACATTG
1 TATCGATACATGGATCTATGTATCGATACATTG
*
9150 TATCGATACATGGATCTTTGTATCGATACATT
1 TATCGATACATGGATCTATGTATCGATACATT
9182 TAGGAATTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.28, C:0.15, G:0.14, T:0.43
Consensus pattern (33 bp):
TATCGATACATGGATCTATGTATCGATACATTG
Found at i:11587 original size:51 final size:53
Alignment explanation
Indices: 11527--11644 Score: 161
Period size: 51 Copynumber: 2.2 Consensus size: 53
11517 ATTCTCCACG
* * * *
11527 ATCGGGGATA-TTTCAACTCCGATTTTATTTTC-AAAACACTAATTTTTT-ATA
1 ATCGGGGATACTCT-AACTCCGATTTTATTTCCAAAAACACCAATTTTTTCACA
11578 ATCGGGGATACTCTAACTCCGATTTTATTTCCAAAAAACACCAATTTTTTCACA
1 ATCGGGGATACTCTAACTCCGATTTTATTTCC-AAAAACACCAATTTTTTCACA
11632 ATCGGGGATACTC
1 ATCGGGGATACTC
11645 CAACCCCGTT
Statistics
Matches: 59, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
51 27 0.46
52 2 0.03
53 15 0.25
54 15 0.25
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.36
Consensus pattern (53 bp):
ATCGGGGATACTCTAACTCCGATTTTATTTCCAAAAACACCAATTTTTTCACA
Found at i:18494 original size:20 final size:20
Alignment explanation
Indices: 18469--18536 Score: 69
Period size: 20 Copynumber: 3.8 Consensus size: 20
18459 ATTTGCCTAC
18469 ATGTATCGATACATTGAATA
1 ATGTATCGATACATTGAATA
18489 ATGTATCGATAC----AAT-
1 ATGTATCGATACATTGAATA
*
18504 A--TAACGATACATTGAATA
1 ATGTATCGATACATTGAATA
*
18522 ATGTTTCGATACATT
1 ATGTATCGATACATT
18537 TCCTTGGTAG
Statistics
Matches: 38, Mismatches: 3, Indels: 14
0.69 0.05 0.25
Matches are distributed among these distances:
13 8 0.21
15 1 0.03
16 3 0.08
17 3 0.08
18 1 0.03
20 22 0.58
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (20 bp):
ATGTATCGATACATTGAATA
Found at i:19485 original size:49 final size:49
Alignment explanation
Indices: 19328--20123 Score: 410
Period size: 49 Copynumber: 16.8 Consensus size: 49
19318 CGAAGAATGA
* * ** * *
19328 CAATGTGCTGATTCATGGCCAGCGACATTAGATTTAAAGAAGAA--TGC
1 CAATGTGCTGATTCAAGGCCAACGACATCGGACTTAAAGATGAAGGTGC
* * * * * * * * *
19375 CAATGTGCTGAGAT-GAGGCTAGCGACATTGGGCTTAGGAATGTTAAAGATGC
1 CAATGTGCTGA-TTCAAGGCCAACGACATCGGACTTA--AA-GATGAAGGTGC
* * * *
19427 CAATATGCTGATTCTAGGCCAACGATATCGGACTTAAAGATGAAGATGC
1 CAATGTGCTGATTCAAGGCCAACGACATCGGACTTAAAGATGAAGGTGC
* * * *
19476 CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGACGGTGC
1 CAATGTGCTGATTCAAGGCCAACGACATCGGACTTAAAGATGAAGGTGC
* * * * * *
19525 CAATGTGTTGATTCAAGGCCAGCGATATCGGAGTTACAGATGAAGATGC
1 CAATGTGCTGATTCAAGGCCAACGACATCGGACTTAAAGATGAAGGTGC
* * * *
19574 CAATGTGTTGATTCAAGGTCGACGACATTGGACTTAAAGATGGTTAAGGTGC
1 CAATGTGCTGATTCAAGGCCAACGACATCGGACTTAAAGAT-G--AAGGTGC
19626 CAATGTGCTGATTCAAGGCCAACGACATC-GATCTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAACGACATCGGA-CTTAAAGATGAAGGTGC
* * * * *
19675 CAATTTGCTAATTCAAGGCCAACGACATTGGTCTTAAAGA-CAAGGTGC
1 CAATGTGCTGATTCAAGGCCAACGACATCGGACTTAAAGATGAAGGTGC
* * * *
19723 CAATATGCTGATTCAAGGCCAGCGATATTGTG-C-T-----T--A--TGC
1 CAATGTGCTGATTCAAGGCCAACGACATCG-GACTTAAAGATGAAGGTGC
* * * * * * *
19762 CAATGTGTTGATTTAAGGCCAGCGACATTGGTCTTAGAGA-CAAGGTGC
1 CAATGTGCTGATTCAAGGCCAACGACATCGGACTTAAAGATGAAGGTGC
* * * * * *
19810 TAATATGCTGATTCAAGGCCAGCAATATTGGAC-T-----T----GTGC
1 CAATGTGCTGATTCAAGGCCAACGACATCGGACTTAAAGATGAAGGTGC
* * * *
19849 CAATGTGCTGATTTAAGGCCAACGACATTGGTCTTAAAGA-CAAGGTGC
1 CAATGTGCTGATTCAAGGCCAACGACATCGGACTTAAAGATGAAGGTGC
* * * ** * * *
19897 CAATATGCTGATTAAAGGCTAGTGATATTGGAC-TCAAGATGGTAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAACGACATCGGACTTAAAGAT-G--AAGGTGC
* * * * *
19948 CAATATGCTGATTCAACGCCAGCGATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAACGACATCGGACTTAAAGATGAAGGTGC
* * * * * *
19991 CAATATGCTGATTCAATGCCAGCGACATTGGTCTTAAAGATAAAGGTG-
1 CAATGTGCTGATTCAAGGCCAACGACATCGGACTTAAAGATGAAGGTGC
* * * ** *
20039 C-A--TGCTGATTCAATGCCAGCGACATTGGTGTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAACGACATCGGACTTAAAGATGAAGGTGC
* * * * *
20085 TAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG
1 CAATGTGCTGATTCAAGGCCAACGACATCGGACTTAAAG
20124 GTGCCACAGA
Statistics
Matches: 601, Mismatches: 97, Indels: 100
0.75 0.12 0.13
Matches are distributed among these distances:
38 1 0.00
39 60 0.10
40 2 0.00
41 1 0.00
43 39 0.06
45 42 0.07
46 1 0.00
47 37 0.06
48 96 0.16
49 205 0.34
50 7 0.01
51 40 0.07
52 70 0.12
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (49 bp):
CAATGTGCTGATTCAAGGCCAACGACATCGGACTTAAAGATGAAGGTGC
Found at i:19818 original size:87 final size:87
Alignment explanation
Indices: 19672--20120 Score: 406
Period size: 87 Copynumber: 5.0 Consensus size: 87
19662 AAGATGAAGG
* * *
19672 TGCCAATTTGCTAATTCAAGGCCAACGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTC
1 TGCCAATGTGCTGATTTAAGGCCAACGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTC
19737 AAGGCCAGCGATATTGTG-CTTA
66 AAGGCCAGCGATATTG-GACTTA
* * * *
19759 TGCCAATGTGTTGATTTAAGGCCAGCGACATTGGTCTTAGAGACAAGGTGCTAATATGCTGATTC
1 TGCCAATGTGCTGATTTAAGGCCAACGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTC
* *
19824 AAGGCCAGCAATATTGGACTTG
66 AAGGCCAGCGATATTGGACTTA
*
19846 TGCCAATGTGCTGATTTAAGGCCAACGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTA
1 TGCCAATGTGCTGATTTAAGGCCAACGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTC
* *
19911 AAGGCTAGTGATATTGGACTCAAGATGGTAAA
66 AAGGCCAGCGATATTGGA--C----T--T--A
* * * * * *
19943 GGTGCCAATATGCTGATTCAACGCCAGCGATATTGGACTT----A-AAGGTGCCAATATGCTGAT
1 --TGCCAATGTGCTGATTTAAGGCCAACGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGAT
* * *
20003 TCAATGCCAGCGACATTGGTCTTAA
64 TCAAGGCCAGCGATATTGGACTT-A
* ** * * * * * *
20028 AGATAAAGGTGCATGCTGATTCAATGCCAGCGACATTGGTGTTAAAGATAAAGGTGCTAATATGC
1 TG-CCAA--TG--TGCTGATTTAAGGCCAACGACATTGGTCTTAAAGA-CAAGGTGCCAATATGC
20093 TGATTCAAGGCCAGCGATATTGGACTTA
60 TGATTCAAGGCCAGCGATATTGGACTTA
20121 AAGGTGCCAC
Statistics
Matches: 296, Mismatches: 42, Indels: 42
0.78 0.11 0.11
Matches are distributed among these distances:
83 1 0.00
84 2 0.01
85 2 0.01
86 3 0.01
87 151 0.51
88 27 0.09
89 1 0.00
92 2 0.01
93 2 0.01
94 71 0.24
95 2 0.01
99 32 0.11
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.27
Consensus pattern (87 bp):
TGCCAATGTGCTGATTTAAGGCCAACGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTC
AAGGCCAGCGATATTGGACTTA
Found at i:20000 original size:43 final size:43
Alignment explanation
Indices: 19939--20129 Score: 188
Period size: 43 Copynumber: 4.3 Consensus size: 43
19929 CTCAAGATGG
* *
19939 TAAAGGTGCCAATATGCTGATTCAACGCCAGCGATATTGGACT
1 TAAAGGTGCCAATATGCTGATTCAATGCCAGCGACATTGGACT
*
19982 TAAAGGTGCCAATATGCTGATTCAATGCCAGCGACATTGGTCT
1 TAAAGGTGCCAATATGCTGATTCAATGCCAGCGACATTGGACT
* * **
20025 TAAAGAT--AAAGGTGCATGCTGATTCAATGCCAGCGACATTGGTGTTAAAGA
1 TAAAGGTGCCAA--T--ATGCTGATTCAATGCCAGCGACATT-G-G----ACT
* * *
20076 TAAAGGTGCTAATATGCTGATTCAAGGCCAGCGATATTGGACT
1 TAAAGGTGCCAATATGCTGATTCAATGCCAGCGACATTGGACT
20119 TAAAGGTGCCA
1 TAAAGGTGCCA
20130 CAGAGTTGTG
Statistics
Matches: 121, Mismatches: 15, Indels: 24
0.76 0.09 0.15
Matches are distributed among these distances:
41 2 0.02
43 58 0.48
45 25 0.21
46 1 0.01
47 2 0.02
48 1 0.01
49 23 0.19
51 7 0.06
53 2 0.02
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (43 bp):
TAAAGGTGCCAATATGCTGATTCAATGCCAGCGACATTGGACT
Found at i:20058 original size:45 final size:46
Alignment explanation
Indices: 19995--20123 Score: 188
Period size: 45 Copynumber: 2.8 Consensus size: 46
19985 AGGTGCCAAT
19995 ATGCTGATTCAATGCCAGCGACATTGGTCTTAAAGATAAAGGTGC-
1 ATGCTGATTCAATGCCAGCGACATTGGTCTTAAAGATAAAGGTGCA
*
20040 ATGCTGATTCAATGCCAGCGACATTGGTGTTAAAGATAAAGGTGCTAA
1 ATGCTGATTCAATGCCAGCGACATTGGTCTTAAAGATAAAGGTGC--A
* * *
20088 TATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG
1 -ATGCTGATTCAATGCCAGCGACATTGGTCTTAAAG
20124 GTGCCACAGA
Statistics
Matches: 75, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
45 44 0.59
49 31 0.41
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.27
Consensus pattern (46 bp):
ATGCTGATTCAATGCCAGCGACATTGGTCTTAAAGATAAAGGTGCA
Found at i:20081 original size:94 final size:96
Alignment explanation
Indices: 19845--20123 Score: 279
Period size: 94 Copynumber: 2.9 Consensus size: 96
19835 TATTGGACTT
* * * * *
19845 GTGCCAATGTGCTGATTTAAGGCCAACGACATTGGTCTTAAAGA-CAAGGTGCCAATATGCTGAT
1 GTGCCAA--TGCTGATTCAACGCCAGCGACATTGGTGTTAAAGATAAAGGTGCCAATATGCTGAT
* * * * *
19909 TAAAGGCTAGTGATATTGGACTCAAGATGGTAAAG
64 TCAAGGCCAGCGATATTGGACTTAA-A-GATAAAG
* **
19944 GTGCCAATATGCTGATTCAACGCCAGCGATATT-G-G----ACTTAAAGGTGCCAATATGCTGAT
1 GTGCC-A-ATGCTGATTCAACGCCAGCGACATTGGTGTTAAAGATAAAGGTGCCAATATGCTGAT
* * *
20003 TCAATGCCAGCGACATTGGTCTTAAAGATAAAG
64 TCAAGGCCAGCGATATTGGACTTAAAGATAAAG
* *
20036 GTG-C-ATGCTGATTCAATGCCAGCGACATTGGTGTTAAAGATAAAGGTGCTAATATGCTGATTC
1 GTGCCAATGCTGATTCAACGCCAGCGACATTGGTGTTAAAGATAAAGGTGCCAATATGCTGATTC
20099 AAGGCCAGCGATATTGGACTTAAAG
66 AAGGCCAGCGATATTGGACTTAAAG
20124 GTGCCACAGA
Statistics
Matches: 147, Mismatches: 24, Indels: 23
0.76 0.12 0.12
Matches are distributed among these distances:
88 23 0.16
89 1 0.01
90 1 0.01
91 1 0.01
92 9 0.06
93 2 0.01
94 82 0.56
98 1 0.01
99 25 0.17
100 1 0.01
101 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.27
Consensus pattern (96 bp):
GTGCCAATGCTGATTCAACGCCAGCGACATTGGTGTTAAAGATAAAGGTGCCAATATGCTGATTC
AAGGCCAGCGATATTGGACTTAAAGATAAAG
Found at i:20163 original size:34 final size:33
Alignment explanation
Indices: 20120--20515 Score: 348
Period size: 34 Copynumber: 11.8 Consensus size: 33
20110 TATTGGACTT
*
20120 AAAGGTGCCACAGAGTTGTGGACTT-AAAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
* * * *
20152 AAAGGGATGCCATGGAGGTGTGGGCCTAAAAGGGAA
1 AAA-GG-TGCCACGGAGTTGTGGACTTAAAA-GGAA
* * *
20188 AAGGGTGCCACGGAGTCGTAGACTTAAACA-G-A
1 AAAGGTGCCACGGAGTTGTGGACTTAAA-AGGAA
* * *
20220 AAAGGTGCCACAGAGTTATGGACTTAAAAGAAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
* * *
20253 AAAGAGTGCCACGAAGTTGTGGGCTTTAAAAAGAA
1 AAAG-GTGCCACGGAGTTGTGGAC-TTAAAAGGAA
* * *
20288 AAAGGTACCACGGAGTTATGGGCTTAAAAGGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAA-GGAA
* * * *
20322 AAGGGTGCCACGGAGGTGTGGGCTTAAAAGGGA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
* ** * *
20355 AAAGAGTGCTACAAAGTTGTGGGCTTTAAAAAGAA
1 AAAG-GTGCCACGGAGTTGTGGAC-TTAAAAGGAA
* * * *
20390 AAAGATACCACGAAGTTGTAGACTTAAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
* * *
20423 AAAGAGTGCCACGAAGTTGTGGGCTTTAAAACGAA
1 AAAG-GTGCCACGGAGTTGTGGAC-TTAAAAGGAA
* * *
20458 AAAAGTACCACGGAGTTGTGGACTTAAAAGGAG
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
20491 AAAGGTGCCACGGAGTTGTGGACTT
1 AAAGGTGCCACGGAGTTGTGGACTT
20516 TGAGAAGAGA
Statistics
Matches: 290, Mismatches: 60, Indels: 27
0.77 0.16 0.07
Matches are distributed among these distances:
31 1 0.00
32 27 0.09
33 64 0.22
34 150 0.52
35 42 0.14
36 6 0.02
ACGTcount: A:0.38, C:0.13, G:0.31, T:0.18
Consensus pattern (33 bp):
AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
Found at i:21843 original size:11 final size:11
Alignment explanation
Indices: 21829--21865 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
21819 TTGCACTCTC
21829 TTTTTTTTGTG
1 TTTTTTTTGTG
21840 TTTTTTTTGT-
1 TTTTTTTTGTG
*
21850 TTTTTTATGTG
1 TTTTTTTTGTG
21861 TTTTT
1 TTTTT
21866 ACTTTTAACT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
10 9 0.38
11 15 0.62
ACGTcount: A:0.03, C:0.00, G:0.14, T:0.84
Consensus pattern (11 bp):
TTTTTTTTGTG
Found at i:29047 original size:21 final size:20
Alignment explanation
Indices: 29021--29059 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
29011 GTTGGGACCT
29021 TGTATCGATACATTCTAGAAA
1 TGTATCGATACATT-TAGAAA
*
29042 TGTATCGATATATTTAGA
1 TGTATCGATACATTTAGA
29060 CAAAAATGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.36, C:0.10, G:0.15, T:0.38
Consensus pattern (20 bp):
TGTATCGATACATTTAGAAA
Found at i:35886 original size:13 final size:13
Alignment explanation
Indices: 35868--35893 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
35858 CAATTTTTTG
35868 TGTATCGATACAT
1 TGTATCGATACAT
35881 TGTATCGATACAT
1 TGTATCGATACAT
35894 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:35905 original size:32 final size:33
Alignment explanation
Indices: 35848--35911 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
35838 TATAAGCCAA
**
35848 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTTGTGTATCGATACAT
35881 TGTATCGATAC-ATACTTTGTGTATCGATACA
1 TGTATCGATACAATACTTTGTGTATCGATACA
35912 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAT
Found at i:36642 original size:21 final size:21
Alignment explanation
Indices: 36601--36644 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
36591 CTCCCCTTTA
* *
36601 TCTCCCCCGTTTATTAATAAT
1 TCTCCCCCGTTAATCAATAAT
36622 TCTCCCCC-TTAATCAAGTAAT
1 TCTCCCCCGTTAATCAA-TAAT
36643 TC
1 TC
36645 ATATCAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.25, C:0.32, G:0.05, T:0.39
Consensus pattern (21 bp):
TCTCCCCCGTTAATCAATAAT
Found at i:37527 original size:13 final size:13
Alignment explanation
Indices: 37509--37533 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37499 ACTGAAGCAA
37509 TGTATCGATACAT
1 TGTATCGATACAT
37522 TGTATCGATACA
1 TGTATCGATACA
37534 ATCTGGAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:41238 original size:13 final size:13
Alignment explanation
Indices: 41220--41245 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
41210 CAATTTTTTG
41220 TGTATCGATACAT
1 TGTATCGATACAT
41233 TGTATCGATACAT
1 TGTATCGATACAT
41246 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:41257 original size:32 final size:33
Alignment explanation
Indices: 41200--41263 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
41190 TATAAGCCAA
**
41200 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTTGTGTATCGATACAT
41233 TGTATCGATAC-ATACTTTGTGTATCGATACA
1 TGTATCGATACAATACTTTGTGTATCGATACA
41264 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAT
Found at i:42062 original size:33 final size:33
Alignment explanation
Indices: 42020--42223 Score: 225
Period size: 33 Copynumber: 6.2 Consensus size: 33
42010 TTCTCCAAAT
42020 CTTTTTCTTCAAAGTCCACGACTCAATGGCATC
1 CTTTTTCTTCAAAGTCCACGACTCAATGGCATC
* * *
42053 CTTTTTCTTCAAAGTCCACGACTTAGTGGCATT
1 CTTTTTCTTCAAAGTCCACGACTCAATGGCATC
* * ** *
42086 ATTTTTTTTCAAAGTCCACGACTCTGTAGCA-C
1 CTTTTTCTTCAAAGTCCACGACTCAATGGCATC
42118 CATTTCTT-TTCAAAGTCCACGACTCAATGGCATC
1 C-TTT-TTCTTCAAAGTCCACGACTCAATGGCATC
* * *
42152 TTTTTTCTTCAAAGTCCATGACTCAGTGGCATC
1 CTTTTTCTTCAAAGTCCACGACTCAATGGCATC
* * * *
42185 ATTTTTCTTTAAAGTCCACAACTCCATGGCA-C
1 CTTTTTCTTCAAAGTCCACGACTCAATGGCATC
42217 TCTTTTT
1 -CTTTTT
42224 AAGTTCACAA
Statistics
Matches: 143, Mismatches: 23, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
32 3 0.02
33 137 0.96
34 3 0.02
ACGTcount: A:0.24, C:0.26, G:0.12, T:0.38
Consensus pattern (33 bp):
CTTTTTCTTCAAAGTCCACGACTCAATGGCATC
Found at i:42130 original size:66 final size:66
Alignment explanation
Indices: 42021--42223 Score: 250
Period size: 66 Copynumber: 3.1 Consensus size: 66
42011 TCTCCAAATC
* * *
42021 TTTTTCTTCAAAGTCCACGACTCAATGGCATCC-TTTTTCTTCAAAGTCCACGACTTAGTGGCAT
1 TTTTTCTTCAAAGTCCACGACTCAGTGGCA-CCATTTTTCTTCAAAGTCCACGACTCAATGGCAT
42085 -T
65 CT
* * *
42086 ATTTTTTTTCAAAGTCCACGACTCTGTAGCACCATTTCTT-TTCAAAGTCCACGACTCAATGGCA
1 -TTTTTCTTCAAAGTCCACGACTCAGTGGCACCATTT-TTCTTCAAAGTCCACGACTCAATGGCA
42150 TCT
64 TCT
* * * * *
42153 TTTTTCTTCAAAGTCCATGACTCAGTGGCATCATTTTTCTTTAAAGTCCACAACTCCATGGCACT
1 TTTTTCTTCAAAGTCCACGACTCAGTGGCACCATTTTTCTTCAAAGTCCACGACTCAATGGCA-T
42218 CT
65 CT
42220 TTTT
1 TTTT
42224 AAGTTCACAA
Statistics
Matches: 118, Mismatches: 14, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
65 4 0.03
66 104 0.88
67 10 0.08
ACGTcount: A:0.24, C:0.26, G:0.12, T:0.38
Consensus pattern (66 bp):
TTTTTCTTCAAAGTCCACGACTCAGTGGCACCATTTTTCTTCAAAGTCCACGACTCAATGGCATC
T
Found at i:42199 original size:99 final size:99
Alignment explanation
Indices: 42027--42208 Score: 303
Period size: 99 Copynumber: 1.8 Consensus size: 99
42017 AATCTTTTTC
* *
42027 TTCAAAGTCCACGACTCAATGGCATCCTTTTTCTTCAAAGTCCACGACTTAGTGGCATTATTTTT
1 TTCAAAGTCCACGACTCAATGGCATCCTTTTTCTTCAAAGTCCACGACTCAGTGGCATCATTTTT
*
42092 TTTCAAAGTCCACGACTCTGTAGCACCATTTCTT
66 TTTCAAAGTCCACAACTCTGTAGCACCATTTCTT
* *
42126 TTCAAAGTCCACGACTCAATGGCATCTTTTTTCTTCAAAGTCCATGACTCAGTGGCATCATTTTT
1 TTCAAAGTCCACGACTCAATGGCATCCTTTTTCTTCAAAGTCCACGACTCAGTGGCATCATTTTT
42191 CTTT-AAAGTCCACAACTC
66 -TTTCAAAGTCCACAACTC
42209 CATGGCACTC
Statistics
Matches: 77, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
99 74 0.96
100 3 0.04
ACGTcount: A:0.25, C:0.26, G:0.13, T:0.36
Consensus pattern (99 bp):
TTCAAAGTCCACGACTCAATGGCATCCTTTTTCTTCAAAGTCCACGACTCAGTGGCATCATTTTT
TTTCAAAGTCCACAACTCTGTAGCACCATTTCTT
Found at i:42232 original size:28 final size:29
Alignment explanation
Indices: 42192--42281 Score: 110
Period size: 28 Copynumber: 3.0 Consensus size: 29
42182 ATCATTTTTC
42192 TTTAAAGTCCACAACTCCATGGCACTCTT
1 TTTAAAGTCCACAACTCCATGGCACTCTT
*
42221 TTT-AAGTTCACAACTCCATGGCACATTTTCTT
1 TTTAAAGTCCACAACTCCATGGCAC----TCTT
*
42253 TTTAAAAGTCCACAACTCCGTGGCACTCT
1 TTT-AAAGTCCACAACTCCATGGCACTCT
42282 CTAAAGCCCA
Statistics
Matches: 52, Mismatches: 3, Indels: 11
0.79 0.05 0.17
Matches are distributed among these distances:
28 20 0.38
29 3 0.06
30 3 0.06
32 7 0.13
34 19 0.37
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (29 bp):
TTTAAAGTCCACAACTCCATGGCACTCTT
Found at i:42271 original size:34 final size:32
Alignment explanation
Indices: 42120--42279 Score: 127
Period size: 33 Copynumber: 5.0 Consensus size: 32
42110 TGTAGCACCA
* * *
42120 TTTCTTTTCAAAGTCCACGACTCAATGGCATCT
1 TTTCTTTTTAAAGTCCACAACTCCATGGCA-CT
* **
42153 TTT-TTCTTCAAAGTCCATGACT-CAGTGGCATCAT
1 TTTCTT-TTTAAAGTCCACAACTCCA-TGGCA-C-T
*
42187 TTT-TCTTTAAAGTCCACAACTCCATGGCAC-
1 TTTCTTTTTAAAGTCCACAACTCCATGGCACT
*
42217 --TCTTTTT-AAGTTCACAACTCCATGGCACAT
1 TTTCTTTTTAAAGTCCACAACTCCATGGCAC-T
*
42247 TTTCTTTTTAAAAGTCCACAACTCCGTGGCACT
1 TTTCTTTTT-AAAGTCCACAACTCCATGGCACT
42280 CTCTAAAGCC
Statistics
Matches: 106, Mismatches: 10, Indels: 22
0.77 0.07 0.16
Matches are distributed among these distances:
28 21 0.20
29 4 0.04
32 11 0.10
33 44 0.42
34 26 0.25
ACGTcount: A:0.25, C:0.27, G:0.12, T:0.36
Consensus pattern (32 bp):
TTTCTTTTTAAAGTCCACAACTCCATGGCACT
Found at i:42320 original size:32 final size:31
Alignment explanation
Indices: 42279--42394 Score: 126
Period size: 32 Copynumber: 3.6 Consensus size: 31
42269 TCCGTGGCAC
42279 TCTCTAAAGCCCACACAAGTCAGTCGCAACCCT
1 TCTC-AAAGCCCACACAAGTCAGT-GCAACCCT
* *
42312 TCTGAAAGCCTACACAAGTCAGTGACAACCCT
1 TCTCAAAGCCCACACAAGTCAGTG-CAACCCT
* ** *
42344 TCTTAAAGCCCACACAAGTTGGTGGCAA-CTT
1 TCTCAAAGCCCACACAAGTCAGT-GCAACCCT
42375 TCTCCAAAGCCCACACAAGT
1 TCT-CAAAGCCCACACAAGT
42395 TGCTGGCATC
Statistics
Matches: 72, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
31 6 0.08
32 62 0.86
33 4 0.06
ACGTcount: A:0.32, C:0.34, G:0.15, T:0.20
Consensus pattern (31 bp):
TCTCAAAGCCCACACAAGTCAGTGCAACCCT
Found at i:42508 original size:76 final size:76
Alignment explanation
Indices: 42341--42543 Score: 241
Period size: 78 Copynumber: 2.6 Consensus size: 76
42331 CAGTGACAAC
* * *
42341 CCTTCTTAAAGCCCACACAAGTTGGTGGCAACTTTCTCCAAAGCCCACACAAGTTGCTGGCATCA
1 CCTTC-TAAAGCCCACACAAGTCGGTGGCAAC-CTCT-CAAAGCCCACACAAATTGCTGGCATCA
*
42406 TTTCCTTTTTTTTT
63 TTTCCTTTTTCTTT
* * * *
42420 CCTTCTAAAGCCCACAAAAGTCGGTGGCAAACCTCTCAAAACCCACACAAATTGGTGGCATCCCT
1 CCTTCTAAAGCCCACACAAGTCGGTGGC-AACCTCTCAAAGCCCACACAAATTGCTGGCAT-CAT
42485 TT-C-TTTTCTTT
64 TTCCTTTTTCTTT
* *
42496 CCTTCTAAAGCCCACACAA-TCGGTGGTAACCTTTCTAAAGCCCACACA
1 CCTTCTAAAGCCCACACAAGTCGGTGGCAACCTCTC-AAAGCCCACACA
42544 GGTCGATGGC
Statistics
Matches: 109, Mismatches: 12, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
74 7 0.06
75 18 0.17
76 25 0.23
77 23 0.21
78 28 0.26
79 8 0.07
ACGTcount: A:0.27, C:0.32, G:0.13, T:0.29
Consensus pattern (76 bp):
CCTTCTAAAGCCCACACAAGTCGGTGGCAACCTCTCAAAGCCCACACAAATTGCTGGCATCATTT
CCTTTTTCTTT
Found at i:42561 original size:76 final size:76
Alignment explanation
Indices: 42341--42563 Score: 220
Period size: 76 Copynumber: 2.9 Consensus size: 76
42331 CAGTGACAAC
* * * *
42341 CCTTCTTAAAGCCCACACAAGTTGGTGGCAA-CTTTCTCCAAAGCCCACACAAGTTGCTGGCATC
1 CCTTC-TAAAGCCCACACAAGTCGGTGGAAACCTTTCT--AAAGCCCACACAAGTTGATGGCACC
* *
42405 ATTTCCTTTTTTTTT
63 CTTT-CTTTTTCTTT
* * * * *
42420 CCTTCTAAAGCCCACAAAAGTCGGTGGCAAACCTCTC-AAAACCCACACAAATTGGTGGCATCCC
1 CCTTCTAAAGCCCACACAAGTCGGTGG-AAACCTTTCTAAAGCCCACACAAGTTGATGGCA-CCC
42484 TTTC-TTTTCTTT
64 TTTCTTTTTCTTT
* * *
42496 CCTTCTAAAGCCCACACAA-TCGGTGGTAACCTTTCTAAAGCCCACACAGGTCGATGGCAACCCC
1 CCTTCTAAAGCCCACACAAGTCGGTGGAAACCTTTCTAAAGCCCACACAAGTTGATGGC-A-CCC
42560 TTTC
64 TTTC
42564 AAAAGCCCAC
Statistics
Matches: 120, Mismatches: 19, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
74 7 0.06
75 24 0.20
76 33 0.28
77 21 0.17
78 24 0.20
79 7 0.06
80 4 0.03
ACGTcount: A:0.26, C:0.32, G:0.14, T:0.28
Consensus pattern (76 bp):
CCTTCTAAAGCCCACACAAGTCGGTGGAAACCTTTCTAAAGCCCACACAAGTTGATGGCACCCTT
TCTTTTTCTTT
Found at i:42650 original size:31 final size:31
Alignment explanation
Indices: 42496--42762 Score: 234
Period size: 33 Copynumber: 8.4 Consensus size: 31
42486 TCTTTTCTTT
*
42496 CCTTCTAAAGCCCACACAA-TCGGTGGTAAC
1 CCTTCTAAAGCCCACACAAGTCGGTGGCAAC
* * *
42526 CTTTCTAAAGCCCACACAGGTCGATGGCAACC
1 CCTTCTAAAGCCCACACAAGTCGGTGGCAA-C
* * * * *
42558 CCTTTCAAAAGCCCACATAAATTGGTTGCAAC
1 CC-TTCTAAAGCCCACACAAGTCGGTGGCAAC
* * ** **
42590 CTTTCTCTAAAGCCTAGGCAAGTTAGTGGCAAC
1 C-CT-TCTAAAGCCCACACAAGTCGGTGGCAAC
*
42623 CCTTCTAGAGCCCACACAAGTCGGTGGCAACC
1 CCTTCTAAAGCCCACACAAGTCGGTGGCAA-C
* *
42655 CCTTTTTAAAAGCCCACACAAGTCGGTGGTAAC
1 CC-TTCT-AAAGCCCACACAAGTCGGTGGCAAC
* *
42688 CCTTC-AAAGTCCACACAAGTTGGTGGCAAC
1 CCTTCTAAAGCCCACACAAGTCGGTGGCAAC
* *
42718 CCTCTCAAAAGCCCACACAAGTCGGTGGCATC
1 CCT-TCTAAAGCCCACACAAGTCGGTGGCAAC
42750 CCTTTCT-AAGCCC
1 CC-TTCTAAAGCCC
42763 GATGTCATTG
Statistics
Matches: 187, Mismatches: 39, Indels: 21
0.76 0.16 0.09
Matches are distributed among these distances:
30 42 0.22
31 37 0.20
32 37 0.20
33 49 0.26
34 22 0.12
ACGTcount: A:0.28, C:0.32, G:0.18, T:0.21
Consensus pattern (31 bp):
CCTTCTAAAGCCCACACAAGTCGGTGGCAAC
Found at i:43026 original size:52 final size:52
Alignment explanation
Indices: 42815--43119 Score: 185
Period size: 52 Copynumber: 5.9 Consensus size: 52
42805 CGTTTCTTTC
* * * **
42815 TAAGTCCAATGTCGTTGGCCTTGAATCAACACATTGGCA-CCTT-TTTTTTCT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCATTCTTCTAATTT-T
* * * * * * * * *
42866 TAAGTCTAATATCGCTGGCCTTGAATAAGCATATTGGTA-CCTTTGTCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCATTC-TTCTAATTTT
* * * **
42918 TAAGTCCAATATTGCTGGCCTTGAATCA--ATATCTCGGCA-TCTT-TATCATTCC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACAT-T-GGCATTCTTCTA--ATTTT
* *
42970 TAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGACATTCTTCTAATTTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCATTCTTCTAATTTT
** * * * * *
43022 TAAGTCCAATGTTACTAGCTTTGAATCAGGACATTGGCATTCTTCTCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCATTCTTCTAATTTT
* * * ** *
43074 AAAGTCTAATGTCGTTGG-CTGTGAATCAGCATGTTGGCACTCTTCT
1 TAAGTCCAATGTCGCTGGCCT-TGAATCAGCACATTGGCATTCTTCT
43120 CACCCTTATC
Statistics
Matches: 197, Mismatches: 46, Indels: 21
0.75 0.17 0.08
Matches are distributed among these distances:
50 5 0.03
51 38 0.19
52 141 0.72
53 8 0.04
54 5 0.03
ACGTcount: A:0.24, C:0.22, G:0.17, T:0.38
Consensus pattern (52 bp):
TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCATTCTTCTAATTTT
Found at i:43265 original size:52 final size:53
Alignment explanation
Indices: 43146--43270 Score: 146
Period size: 53 Copynumber: 2.4 Consensus size: 53
43136 AAATCTGACA
** * * *
43146 TCGCTGGCCTTGAATTGGCATATCGACACCTTTATCTCTTTCTAAGTCCAATG
1 TCGCTGGCCTTGAATCAGCACATAGACACCTTTATCTCTTTCTAAGCCCAATG
* * *
43199 TCACTGGCCTTGAATCAGCACATAGGCACCTTTGTCAT-TTT-TAAGCCCAATG
1 TCGCTGGCCTTGAATCAGCACATAGACACCTTTATC-TCTTTCTAAGCCCAATG
*
43251 TTGCTGGCCTTGAATCAGCA
1 TCGCTGGCCTTGAATCAGCA
43271 TAATAGTAAT
Statistics
Matches: 61, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
52 28 0.46
53 32 0.52
54 1 0.02
ACGTcount: A:0.22, C:0.26, G:0.18, T:0.33
Consensus pattern (53 bp):
TCGCTGGCCTTGAATCAGCACATAGACACCTTTATCTCTTTCTAAGCCCAATG
Found at i:43285 original size:52 final size:52
Alignment explanation
Indices: 43188--43321 Score: 144
Period size: 52 Copynumber: 2.6 Consensus size: 52
43178 TATCTCTTTC
* * *
43188 TAAGTCCAATGTCACTGGCCTTGAATCAGCACATAGGCACCTTTGTCATTTT
1 TAAGCCCAATGTCACTGGCCTTGAATCAGCAAATAGGCAACTTTGTCATTTT
** * *
43240 TAAGCCCAATGTTGCTGGCCTTGAATCAGCATAATA-GTAATTTTGTCATTTT
1 TAAGCCCAATGTCACTGGCCTTGAATCAGCA-AATAGGCAACTTTGTCATTTT
*** * *
43292 TAAGTTTAATGTCATTGACCTTGAATCAGC
1 TAAGCCCAATGTCACTGGCCTTGAATCAGC
43322 TAATTAGCAT
Statistics
Matches: 67, Mismatches: 14, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
52 64 0.96
53 3 0.04
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (52 bp):
TAAGCCCAATGTCACTGGCCTTGAATCAGCAAATAGGCAACTTTGTCATTTT
Found at i:44116 original size:21 final size:21
Alignment explanation
Indices: 44051--44124 Score: 71
Period size: 21 Copynumber: 3.6 Consensus size: 21
44041 TTTTACAATT
* *
44051 TGTATCAATATA-AACAGTAAA
1 TGTATCAATACATAACTG-AAA
* *
44072 TGTATCTATACATAAGTG-AA
1 TGTATCAATACATAACTGAAA
* *
44092 TGTATCGATACATACCTGAAA
1 TGTATCAATACATAACTGAAA
44113 TGTATCAATACA
1 TGTATCAATACA
44125 AAACCACCAT
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
20 17 0.40
21 23 0.53
22 3 0.07
ACGTcount: A:0.43, C:0.14, G:0.12, T:0.31
Consensus pattern (21 bp):
TGTATCAATACATAACTGAAA
Found at i:48112 original size:19 final size:19
Alignment explanation
Indices: 48090--48126 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
48080 AATAAAAGAT
*
48090 CATCAGTCTCTTAAAAAAC
1 CATCAGACTCTTAAAAAAC
*
48109 CATCAGAGTCTTAAAAAA
1 CATCAGACTCTTAAAAAA
48127 AATTATTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.46, C:0.22, G:0.08, T:0.24
Consensus pattern (19 bp):
CATCAGACTCTTAAAAAAC
Found at i:48688 original size:20 final size:21
Alignment explanation
Indices: 48649--48688 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
48639 TTTATAGTTA
48649 TATATTTTTATATTTAAAATAT
1 TATATTTTTATA-TTAAAATAT
48671 TATATTTTTATA-TAAAAT
1 TATATTTTTATATTAAAAT
48689 TTTTATATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 6 0.33
22 12 0.67
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
TATATTTTTATATTAAAATAT
Found at i:48693 original size:35 final size:36
Alignment explanation
Indices: 48646--48732 Score: 99
Period size: 37 Copynumber: 2.4 Consensus size: 36
48636 GTATTTATAG
*
48646 TTATATATTTTTATAT-TTAA-AA-TATTATATTTT
1 TTATAAATTTTTATATATTAATAATTATTATATTTT
*
48679 TATATAAAATTTTTATATATTAATAATTTATTTTATTTT
1 T-TAT-AAATTTTTATATATTAATAA-TTATTATATTTT
*
48718 TTATATATTTTTATA
1 TTATAAATTTTTATA
48733 CATATATATT
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
33 1 0.02
34 3 0.07
35 11 0.24
36 4 0.09
37 12 0.27
38 3 0.07
39 11 0.24
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (36 bp):
TTATAAATTTTTATATATTAATAATTATTATATTTT
Found at i:50227 original size:24 final size:25
Alignment explanation
Indices: 50197--50246 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 25
50187 TAAAATATAA
50197 ATTTTTACA-TTAAAAT-TAAAATTT
1 ATTTTTA-ATTTAAAATATAAAATTT
*
50221 ATTTTTAATTTTAAATATAAAATTT
1 ATTTTTAATTTAAAATATAAAATTT
50246 A
1 A
50247 AATACATAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 1 0.04
24 13 0.57
25 9 0.39
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (25 bp):
ATTTTTAATTTAAAATATAAAATTT
Found at i:57439 original size:21 final size:19
Alignment explanation
Indices: 57415--57481 Score: 55
Period size: 21 Copynumber: 3.4 Consensus size: 19
57405 AATGATAAAT
57415 ATAAAATTAATTATTATAATA
1 ATAAAATTAA-TATT-TAATA
*
57436 ATAATATTGAATAATTTAATA
1 ATAAAATT-AAT-ATTTAATA
* * *
57457 GTATAATTAA-AATTAATA
1 ATAAAATTAATATTTAATA
57475 ATAAAAT
1 ATAAAAT
57482 ATATATTAAA
Statistics
Matches: 37, Mismatches: 7, Indels: 7
0.73 0.14 0.14
Matches are distributed among these distances:
18 12 0.32
20 2 0.05
21 18 0.49
22 5 0.14
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (19 bp):
ATAAAATTAATATTTAATA
Found at i:57650 original size:20 final size:21
Alignment explanation
Indices: 57611--57651 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
57601 GAAAAATTAA
57611 TTTAAATATTATTAGTGAAATT
1 TTTAAATATTATTAG-GAAATT
*
57633 TTTAAATTTTATTA-GAAAT
1 TTTAAATATTATTAGGAAAT
57652 ATTATTGATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
22 13 0.72
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.51
Consensus pattern (21 bp):
TTTAAATATTATTAGGAAATT
Found at i:58004 original size:21 final size:21
Alignment explanation
Indices: 57978--58018 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
57968 TCAATATAAA
*
57978 ATGTTTAAATCTTTTAATTTG
1 ATGTTTAAATCTTTAAATTTG
57999 ATGTTTAAATCTTTAAATTT
1 ATGTTTAAATCTTTAAATTT
58019 CTTAATAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.32, C:0.05, G:0.07, T:0.56
Consensus pattern (21 bp):
ATGTTTAAATCTTTAAATTTG
Found at i:58116 original size:19 final size:19
Alignment explanation
Indices: 58094--58156 Score: 81
Period size: 19 Copynumber: 3.3 Consensus size: 19
58084 TACTACCCAA
58094 TAAAAAAACATCATTCTTT
1 TAAAAAAACATCATTCTTT
*
58113 TAAAAAAATCACCATTCTTT
1 TAAAAAAA-CATCATTCTTT
* * *
58133 TAAAAAAAAATTATTTTTT
1 TAAAAAAACATCATTCTTT
58152 TAAAA
1 TAAAA
58157 TAATTATTTA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
19 20 0.53
20 18 0.47
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (19 bp):
TAAAAAAACATCATTCTTT
Found at i:58118 original size:20 final size:20
Alignment explanation
Indices: 58095--58156 Score: 81
Period size: 20 Copynumber: 3.1 Consensus size: 20
58085 ACTACCCAAT
58095 AAAAAAACATCATTCTTTTA
1 AAAAAAACATCATTCTTTTA
* *
58115 AAAAAATCACCATTCTTTTA
1 AAAAAAACATCATTCTTTTA
* *
58135 AAAAAAA-ATTATTTTTTTA
1 AAAAAAACATCATTCTTTTA
58154 AAA
1 AAA
58157 TAATTATTTA
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
19 12 0.33
20 24 0.67
ACGTcount: A:0.52, C:0.11, G:0.00, T:0.37
Consensus pattern (20 bp):
AAAAAAACATCATTCTTTTA
Found at i:59367 original size:22 final size:22
Alignment explanation
Indices: 59342--59395 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
59332 GAATAAAATT
*
59342 TAATTAGAATTTAATTTTATAA-
1 TAATTA-AATTTAATTTTAAAAC
**
59364 TAATTAAAAATAATTTTAAAAC
1 TAATTAAATTTAATTTTAAAAC
59386 TAATTAAATT
1 TAATTAAATT
59396 CTTATTTTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
21 12 0.46
22 14 0.54
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (22 bp):
TAATTAAATTTAATTTTAAAAC
Found at i:59379 original size:21 final size:22
Alignment explanation
Indices: 59353--59393 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
59343 AATTAGAATT
*
59353 TAATTTTATAA-TAATTAAAAA
1 TAATTTTAAAACTAATTAAAAA
59374 TAATTTTAAAACTAATTAAA
1 TAATTTTAAAACTAATTAAA
59394 TTCTTATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (22 bp):
TAATTTTAAAACTAATTAAAAA
Found at i:70084 original size:20 final size:19
Alignment explanation
Indices: 70052--70126 Score: 78
Period size: 20 Copynumber: 3.8 Consensus size: 19
70042 AAAAAGACAT
*
70052 AATGTATCAATACATTGAA
1 AATGTATCGATACATTGAA
* *
70071 GAATATATCGATACATTCATA
1 -AATGTATCGATACATTGA-A
* *
70092 CATGTATCGATATATTGAA
1 AATGTATCGATACATTGAA
70111 ATATGTATCGATACAT
1 A-ATGTATCGATACAT
70127 CTGGGTAAAA
Statistics
Matches: 44, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
19 1 0.02
20 42 0.95
21 1 0.02
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.35
Consensus pattern (19 bp):
AATGTATCGATACATTGAA
Found at i:70097 original size:40 final size:39
Alignment explanation
Indices: 70049--70126 Score: 104
Period size: 40 Copynumber: 2.0 Consensus size: 39
70039 GGTAAAAAGA
70049 CATAATGTATCAATACATTGAAGA-ATATATCGATACATT
1 CATAATGTATCAATACATTGAA-ATATATATCGATACATT
* * *
70088 CATACATGTATCGATATATTGAAATATGTATCGATACAT
1 CATA-ATGTATCAATACATTGAAATATATATCGATACAT
70127 CTGGGTAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
39 5 0.15
40 29 0.85
ACGTcount: A:0.41, C:0.13, G:0.12, T:0.35
Consensus pattern (39 bp):
CATAATGTATCAATACATTGAAATATATATCGATACATT
Found at i:70878 original size:60 final size:60
Alignment explanation
Indices: 70705--71487 Score: 1078
Period size: 60 Copynumber: 13.2 Consensus size: 60
70695 CACTAACTTG
* * *
70705 TGTGGGCTTTGAAAAGAGTTGCCACCAACTCGTGTGGGCTTTGAAAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGGTTGCCACCGACTCGTGTGGGCTTTGAAAGGA-TGCCACTGACT
**
70766 TGTGGGCTTTG-AAAGGG-TGCCATTGACT--TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAAGGGTTGCCACCGACTCGTGTGGGCTTTGAAAGGATGCCACTGACT
*
70822 TGTGGGCTTTGAAAAGGGTTGCCAGCGACTCGTGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAAGGGTTGCCACCGACTCGTGTGGGCTTTGAAAGGATGCCACTGACT
*
70882 TGTGGGCTTTGAAAAGTGTTGCCACCGACTC--GTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAAGGGTTGCCACCGACTCGTGTGGGCTTTGAAAGGATGCCACTGACT
* *
70940 TGTGGGCTTTGAAAAGGGTTGCCACCGATTCGTGTGGGCTTTGAAAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGGTTGCCACCGACTCGTGTGGGCTTTGAAAGGA-TGCCACTGACT
*
71001 TGTGGGCTTTG-AAAGGGTGCTGCCACCGAATC--GTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAAGGGT--TGCCACCGACTCGTGTGGGCTTTGAAAGGATGCCACTGACT
* *
71060 TGTGGGCTTTGAAAAGAGTTGCCACCGACTCGTGTGGGCTTTGAAAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGGTTGCCACCGACTCGTGTGGGCTTTGAAAGGA-TGCCACTGACT
*
71121 TGTGGGCTTTGAAAAGGGTTGCCACCGACTCGTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGGGTTGCCACCGACTCGTGTGGGCTTTGAAAGGATGCCACTGACT
* *
71181 TGTGGGCTTTGAAAAGTGTTGCCACCGACTC--GTAGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAAGGGTTGCCACCGACTCGTGTGGGCTTTGAAAGGATGCCACTGACT
* *
71239 TGTGGGCTTTGAAAAGGGTTGCCACCGACTCGTGTGGGCTTTGAAAAGAGTACCACTGACT
1 TGTGGGCTTTGAAAAGGGTTGCCACCGACTCGTGTGGGCTTTGAAAGGA-TGCCACTGACT
* * * *
71300 TGTGGGCTTT-AAAAAGG-TGCCACTGACT--TGTGGG-TTTGAAAGGGTGCCACTGATT
1 TGTGGGCTTTGAAAAGGGTTGCCACCGACTCGTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
71355 TGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTCAAATAGGTTGCCACCGACTT
1 TGTGGGCTTTGAAAAGGGTTGCCACCGACTCGTGTGGGCTTT-GAA-AGGATGCCACTGAC-T
* * * *
71418 GTGTGGGCTTTGAAATA-GGTTTCCACCGACTTGTGTGGGCTTTAAAAGGGTGCCACTGACT
1 -TGTGGGCTTTGAAA-AGGGTTGCCACCGACTCGTGTGGGCTTTGAAAGGATGCCACTGACT
71479 TGTGGGCTT
1 TGTGGGCTT
71488 AAAAAGGATA
Statistics
Matches: 652, Mismatches: 44, Indels: 53
0.87 0.06 0.07
Matches are distributed among these distances:
55 19 0.03
56 35 0.05
57 38 0.06
58 131 0.20
59 46 0.07
60 192 0.29
61 114 0.17
62 34 0.05
63 4 0.01
64 39 0.06
ACGTcount: A:0.21, C:0.19, G:0.32, T:0.28
Consensus pattern (60 bp):
TGTGGGCTTTGAAAAGGGTTGCCACCGACTCGTGTGGGCTTTGAAAGGATGCCACTGACT
Found at i:71007 original size:179 final size:175
Alignment explanation
Indices: 70705--71776 Score: 1054
Period size: 179 Copynumber: 6.1 Consensus size: 175
70695 CACTAACTTG
*
70705 TGTGGGCTTTGAAAAGAGTTGCCACCAACTCGTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTG
1 TGTGGGCTTTGAAAAGAGTTGCCACCGACTCG-GTGGGCTTTGAAAAGAGTGCCACTGACTTGTG
** * *
70770 GGCTTTG-AAAGGGTGCCATTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGA
65 GGCTTTGAAAAGGGTGCCACCGACGTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGA
*
70834 AAAGGGTTGCCAGCGACTCGTGTGGGCTTTGAAAGGATGCCACTGACT
130 AAAGGGTTGCCACCGACTC--GTGGGCTTTGAAAGGATGCCACTGACT
* *
70882 TGTGGGCTTTGAAAAGTGTTGCCACCGACTC-GTGGGCTTTGAAAGGA-TGCCACTGACTTGTGG
1 TGTGGGCTTTGAAAAGAGTTGCCACCGACTCGGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGG
70945 GCTTTGAAAAGGGTTGCCACCGATTCGTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTT
66 GCTTTGAAAAGGG-TGCCACCGA--CGTGTGGGCTTTGAAAAGA-TGCCACTGACTTGTGGGCTT
*
71010 TG-AAAGGGTGCTGCCACCGAATCGTGGGCTTTGAAAGGATGCCACTGACT
127 TGAAAAGGGT--TGCCACCGACTCGTGGGCTTTGAAAGGATGCCACTGACT
71060 TGTGGGCTTTGAAAAGAGTTGCCACCGACTCGTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTG
1 TGTGGGCTTTGAAAAGAGTTGCCACCGACTCG-GTGGGCTTTGAAAAGAGTGCCACTGACTTGTG
* *
71125 GGCTTTGAAAAGGGTTGCCACCGACTCGTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
65 GGCTTTGAAAAGGG-TGCCACCGA--CGTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTT
* *
71190 TGAAAAGTGTTGCCACCGACTCGTAGGCTTTGAAAGGATGCCACTGACT
127 TGAAAAGGGTTGCCACCGACTCGTGGGCTTTGAAAGGATGCCACTGACT
* *
71239 TGTGGGCTTTGAAAAGGGTTGCCACCGACTCGTGTGGGCTTTGAAAAGAGTACCACTGACTTGTG
1 TGTGGGCTTTGAAAAGAGTTGCCACCGACTCG-GTGGGCTTTGAAAAGAGTGCCACTGACTTGTG
* * * * * *
71304 GGCTTT-AAAAAGGTGCCACTGACTTGTGGG-TTTGAAAGGGTGCCACTGATTTGTGGGCTTTGA
65 GGCTTTGAAAAGGGTGCCACCGACGTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGA
* * * * *
71367 AATGGGTTGCCACCGACTTGTGTGGGCTTTCAAATAGGTTGCCACCGACTT
130 AAAGGGTTGCCACCGAC-T-CGTGGGCTTT-GAA-AGGATGCCACTGAC-T
* * *
71418 GTGTGGGCTTTGAAATAG-GTTTCCACCGACTTGTGTGGGCTTT-AAAAGGGTGCCACTGACTTG
1 -TGTGGGCTTTGAAA-AGAGTTGCCACCGACTCG-GTGGGCTTTGAAAAGAGTGCCACTGACTTG
* * * * ** * * * *
71481 TGGGC-TTAAAAAGGATACCA-CGAAGTTGTGAAC-TT-AAAAGGGTGCCACGGAGTTGTGGACT
63 TGGGCTTTGAAAAGGGTGCCACCGACG-TGTGGGCTTTGAAAA-GATGCCACTGACTTGTGGGCT
* * * * * *
71542 TT-AAAAGGG-TGCCACGGAGTTGTGGACTTT-AAAGGATGCCACGGAGT
126 TTGAAAAGGGTTGCCACCGACTCGTGGGCTTTGAAAGGATGCCACTGACT
* * * * * * * *
71589 TGTGGAC-TT-AAAACGA--TGCCACGGAGT-TGTGGAC-TTGAAAAGGGTGCCACAGAGTTGTG
1 TGTGGGCTTTGAAAA-GAGTTGCCACCGACTCGGTGGGCTTTGAAAAGAGTGCCACTGACTTGTG
* * * * * * *
71648 GACTTT--AAAGGG-GACCA-CAAAGTTGTGGAC-TT-AAAACGATGCCACAGAGTTGTGGACTT
65 GGCTTTGAAAAGGGTG-CCACCGACG-TGTGGGCTTTGAAAA-GATGCCACTGACTTGTGGGCTT
* * * * * * * *
71707 T-AAAAGGG-TGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGT
127 TGAAAAGGGTTGCCACCGACTCGTGGGCTTTGAAAGGATGCCACTGACT
*
71754 TGTGGACTTT-AAAAG-GTTGCCAC
1 TGTGGGCTTTGAAAAGAGTTGCCAC
71777 GGAGTTGTGG
Statistics
Matches: 792, Mismatches: 72, Indels: 73
0.85 0.08 0.08
Matches are distributed among these distances:
164 76 0.10
165 51 0.06
166 14 0.02
167 9 0.01
168 4 0.01
169 2 0.00
170 6 0.01
171 1 0.00
172 11 0.01
173 2 0.00
174 67 0.08
175 38 0.05
176 16 0.02
177 47 0.06
178 112 0.14
179 187 0.24
180 83 0.10
181 66 0.08
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.27
Consensus pattern (175 bp):
TGTGGGCTTTGAAAAGAGTTGCCACCGACTCGGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGG
GCTTTGAAAAGGGTGCCACCGACGTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAA
AAGGGTTGCCACCGACTCGTGGGCTTTGAAAGGATGCCACTGACT
Found at i:71492 original size:28 final size:28
Alignment explanation
Indices: 70737--72180 Score: 1021
Period size: 28 Copynumber: 50.5 Consensus size: 28
70727 CACCAACTCG
* * *
70737 TGTGGGCTTTGAAAAGAGTGCCACTGACT
1 TGTGGGCTTT-AAAAGGGTGCCACGGAGT
* ** *
70766 TGTGGGCTTTGAAAGGGTGCCATTGACT
1 TGTGGGCTTTAAAAGGGTGCCACGGAGT
* * * *
70794 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTAAAAGGGTGCCACGGAGT
*
70822 TGTGGGCTTTGAAAAGGGTTGCCA-GCGACT
1 TGTGGGCTTT-AAAAGGG-TGCCACG-GAGT
* * * *
70852 CGTGTGGGCTTTGAAAGGATGCCACTGACT
1 --TGTGGGCTTTAAAAGGGTGCCACGGAGT
* * *
70882 TGTGGGCTTTGAAAAGTGTTGCCACCGACT
1 TGTGGGCTTT-AAAAG-GGTGCCACGGAGT
* * * * *
70912 CGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTAAAAGGGTGCCACGGAGT
* *
70940 TGTGGGCTTTGAAAAGGGTTGCCACCGATT
1 TGTGGGCTTT-AAAAGGG-TGCCACGGAGT
* * *
70970 CGTGTGGGCTTTGAAAAGAGTGCCACTGACT
1 --TGTGGGCTTT-AAAAGGGTGCCACGGAGT
* * *
71001 TGTGGGCTTTGAAAGGGTGCTGCCACCGAAT
1 TGTGGGCTTT-AAAAGG-G-TGCCACGGAGT
* * * * *
71032 CGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTAAAAGGGTGCCACGGAGT
* * *
71060 TGTGGGCTTTGAAAAGAGTTGCCACCGACT
1 TGTGGGCTTT-AAAAG-GGTGCCACGGAGT
* * *
71090 CGTGTGGGCTTTGAAAAGAGTGCCACTGACT
1 --TGTGGGCTTT-AAAAGGGTGCCACGGAGT
* *
71121 TGTGGGCTTTGAAAAGGGTTGCCACCGACT
1 TGTGGGCTTT-AAAAGGG-TGCCACGGAGT
* * ** *
71151 CGTGTGGGCTTTGAAAGGATGCCACTAACT
1 --TGTGGGCTTTAAAAGGGTGCCACGGAGT
* * *
71181 TGTGGGCTTTGAAAAGTGTTGCCACCGACT
1 TGTGGGCTTT-AAAAG-GGTGCCACGGAGT
* * * * * *
71211 CGTAGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTAAAAGGGTGCCACGGAGT
* *
71239 TGTGGGCTTTGAAAAGGGTTGCCACCGACT
1 TGTGGGCTTT-AAAAGGG-TGCCACGGAGT
* * * *
71269 CGTGTGGGCTTTGAAAAGAGTACCACTGACT
1 --TGTGGGCTTT-AAAAGGGTGCCACGGAGT
* * *
71300 TGTGGGCTTTAAAAAGGTGCCACTGACT
1 TGTGGGCTTTAAAAGGGTGCCACGGAGT
* * *
71328 TGTGGG-TTTGAAAGGGTGCCACTGATT
1 TGTGGGCTTTAAAAGGGTGCCACGGAGT
* * *
71355 TGTGGGCTTTGAAATGGGTTGCCACCGACTT
1 TGTGGGCTTT-AAAAGGG-TGCCACGGA-GT
* * *
71386 GTGTGGGCTTTCAAATAGGTTGCCACCGACTT
1 -TGTGGGCTTT-AAA-AGGGTGCCACGGA-GT
* * * *
71418 GTGTGGGCTTTGAAATAGGTTTCCACCGACTT
1 -TGTGGGCTTT-AAA-AGGGTGCCACGGA-GT
* *
71450 GTGTGGGCTTTAAAAGGGTGCCACTGACT
1 -TGTGGGCTTTAAAAGGGTGCCACGGAGT
* * * *
71479 TGTGGGCTTAAAAAGGATACCACGAAGT
1 TGTGGGCTTTAAAAGGGTGCCACGGAGT
**
71507 TGTGAAC-TTAAAAGGGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGTGCCACGGAGT
*
71534 TGTGGACTTTAAAAGGGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGTGCCACGGAGT
* *
71562 TGTGGACTTT-AAAGGATGCCACGGAGT
1 TGTGGGCTTTAAAAGGGTGCCACGGAGT
* * *
71589 TGTGGAC-TTAAAACGATGCCACGGAGT
1 TGTGGGCTTTAAAAGGGTGCCACGGAGT
* * *
71616 TGTGGACTTGAAAAGGGTGCCACAGAGT
1 TGTGGGCTTTAAAAGGGTGCCACGGAGT
* **
71644 TGTGGACTTT-AAAGGG-GACCACAAAGT
1 TGTGGGCTTTAAAAGGGTG-CCACGGAGT
* * * *
71671 TGTGGAC-TTAAAACGATGCCACAGAGT
1 TGTGGGCTTTAAAAGGGTGCCACGGAGT
*
71698 TGTGGACTTTAAAAGGGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGTGCCACGGAGT
*
71726 TGTGGACTTTAAAAGGGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGTGCCACGGAGT
* *
71754 TGTGGACTTTAAAAGGTTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGTGCCACGGAGT
* *
71782 TGTGGACTTT-AAAGGGTACCACGGAGT
1 TGTGGGCTTTAAAAGGGTGCCACGGAGT
* * * * *
71809 TGTTGAC-TTAAAACGATGCCACAGAGT
1 TGTGGGCTTTAAAAGGGTGCCACGGAGT
*
71836 TGTGGACTTTAAAAGGGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGTGCCACGGAGT
* * *
71864 TGTGGACTTT-AAAGGGTACCATGGAGT
1 TGTGGGCTTTAAAAGGGTGCCACGGAGT
* * * *
71891 TATGGAC-TTAAAACGATGCCACGGAGT
1 TGTGGGCTTTAAAAGGGTGCCACGGAGT
* *
71918 TGTGGACTTTAAAAGGGTGCCACAGAGT
1 TGTGGGCTTTAAAAGGGTGCCACGGAGT
* *
71946 TGTGGACTTTAAAAGGGTACCACGGAGT
1 TGTGGGCTTTAAAAGGGTGCCACGGAGT
* * **
71974 TATGGACTTT-AAAGGGTATCACGGAGT
1 TGTGGGCTTTAAAAGGGTGCCACGGAGT
* * * * *
72001 TGTGGAC-TTAAAACGATGCTACGGAAT
1 TGTGGGCTTTAAAAGGGTGCCACGGAGT
* *
72028 TATGGACTTTAAAAGGGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGTGCCACGGAGT
* *
72056 TGTGGACTTTAAAAGGATGCCACGGAGT
1 TGTGGGCTTTAAAAGGGTGCCACGGAGT
* *
72084 TGTGGACTTTAAAAGGATGCCACGGAGT
1 TGTGGGCTTTAAAAGGGTGCCACGGAGT
* * *
72112 TGTGGAC-TTAAAAGGATGCCACAGAGT
1 TGTGGGCTTTAAAAGGGTGCCACGGAGT
* * *
72139 TGTGGAC-TTAAAAGGATGCCACAGAGT
1 TGTGGGCTTTAAAAGGGTGCCACGGAGT
*
72166 TGTGGACTTTAAAAG
1 TGTGGGCTTTAAAAG
72181 AAAATGCCAC
Statistics
Matches: 1215, Mismatches: 153, Indels: 95
0.83 0.10 0.06
Matches are distributed among these distances:
26 11 0.01
27 304 0.25
28 480 0.40
29 93 0.08
30 128 0.11
31 61 0.05
32 136 0.11
33 2 0.00
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.27
Consensus pattern (28 bp):
TGTGGGCTTTAAAAGGGTGCCACGGAGT
Found at i:71609 original size:82 final size:83
Alignment explanation
Indices: 70737--72212 Score: 998
Period size: 82 Copynumber: 17.2 Consensus size: 83
70727 CACCAACTCG
* * * * * * ** * *
70737 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCATTGACTTGTGGGCT
1 TGTGGACTTT-AAAAGGGTGCCACGGAGTTGTGGACTTT-AAAGGATGCCACGGAGTTGTGGACT
* * *
70802 TTGAAAGGATGCCACTGACT
64 TTAAAAGGATGCCACGGAGT
* * * * *
70822 TGTGGGCTTTGAAAAGGGTTGCCA-GCGACTCGTGTGGGCTTTGAAAGGATGCCACTGACTTGTG
1 TGTGGACTTT-AAAAGGG-TGCCACG-GAGT--TGTGGACTTT-AAAGGATGCCACGGAGTTGTG
* * * *
70886 GGCTTTGAAAAGTGTTGCCACCGACT
60 GACTTT-AAAAG-GATGCCACGGAGT
* * * * * * * * * *
70912 CGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGGGTTGCCACCGATTCGTGTGG
1 TGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTT--AAA-GGATGCCACGGAGT--TGTGG
* * *
70977 GCTTTGAAAA-GAGTGCCACTGACT
61 ACTTT-AAAAGGA-TGCCACGGAGT
* * * * * * * * *
71001 TGTGGGCTTTGAAAGGGTGCTGCCACCGAATCGTGGGCTTTGAAAGGATGCCACTGACTTGTGGG
1 TGTGGACTTT-AAAAGG-G-TGCCACGGAGTTGTGGACTTT-AAAGGATGCCACGGAGTTGTGGA
* * *
71066 CTTTGAAAAGAGTTGCCACCGACT
62 CTTT-AAAAG-GATGCCACGGAGT
* * * * * * * *
71090 CGTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGGGTTGCCACCGACTCGTG
1 --TGTGGACTTT-AAAAGGGTGCCACGGAGTTGTGGACTTT--AAA-GGATGCCACGGAGT--TG
* * ** *
71155 TGGGCTTTGAAAGGATGCCACTAACT
58 TGGACTTTAAAAGGATGCCACGGAGT
* * * * * * * *
71181 TGTGGGCTTTGAAAAGTGTTGCCACCGACTCGTAGG-CTTTGAAAGGATGCCACTGACTTGTGGG
1 TGTGGACTTT-AAAAG-GGTGCCACGGAGTTGT-GGACTTT-AAAGGATGCCACGGAGTTGTGGA
* * *
71245 CTTTGAAAAGGGTTGCCACCGACT
62 CTTT-AAAA-GGATGCCACGGAGT
* * * * * * * *
71269 CGTGTGGGCTTTGAAAAGAGTACCACTGACTTGTGGGCTTTAAAAAGG-TGCCACTGACTTGTGG
1 --TGTGGACTTT-AAAAGGGTGCCACGGAGTTGTGGACTTT--AAAGGATGCCACGGAGTTGTGG
* * * * *
71333 -GTTTGAAAGGGTGCCACTGATT
61 ACTTTAAAAGGATGCCACGGAGT
* * * * * * * *
71355 TGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTCAAATAGGTTGCCACCGACTTGT
1 TGTGGACTTT-AAAAGGG-TGCCACGGA-GT-TGTGGACTTT--AA-AGGATGCCACGGA-GT-T
* * * * *
71420 GTGGGCTTTGAAATAGGTTTCCACCGACTT
57 GTGGACTTT-AAA-AGGATGCCACGGA-GT
* * * * * * * *
71450 GTGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTAAAAAGGATACCACGAAGTTGTGAAC-
1 -TGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTT-TAAAGGATGCCACGGAGTTGTGGACT
*
71514 TTAAAAGGGTGCCACGGAGT
64 TTAAAAGGATGCCACGGAGT
71534 TGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAGGATGCCACGGAGTTGTGGAC-TT
1 TGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAGGATGCCACGGAGTTGTGGACTTT
*
71598 AAAACGATGCCACGGAGT
66 AAAAGGATGCCACGGAGT
* * * **
71616 TGTGGACTTGAAAAGGGTGCCACAGAGTTGTGGACTTTAAAGG-GGACCACAAAGTTGTGGAC-T
1 TGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAGGATG-CCACGGAGTTGTGGACTT
* *
71679 TAAAACGATGCCACAGAGT
65 TAAAAGGATGCCACGGAGT
*
71698 TGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTT
1 TGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTT-AAAGGATGCCACGGAGTTGTGGACTT
*
71763 TAAAAGGTTGCCACGGAGT
65 TAAAAGGATGCCACGGAGT
* * * * *
71782 TGTGGACTTT-AAAGGGTACCACGGAGTTGTTGACTTAAAACGATGCCACAGAGTTGTGGACTTT
1 TGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAGGATGCCACGGAGTTGTGGACTTT
*
71846 AAAAGGGTGCCACGGAGT
66 AAAAGGATGCCACGGAGT
* * * * *
71864 TGTGGACTTT-AAAGGGTACCATGGAGTTATGGACTTAAAACGATGCCACGGAGTTGTGGACTTT
1 TGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAGGATGCCACGGAGTTGTGGACTTT
* *
71928 AAAAGGGTGCCACAGAGT
66 AAAAGGATGCCACGGAGT
* * * **
71946 TGTGGACTTTAAAAGGGTACCACGGAGTTATGGACTTTAAAGGGTATCACGGAGTTGTGGAC-TT
1 TGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAGGATGCCACGGAGTTGTGGACTTT
* * *
72010 AAAACGATGCTACGGAAT
66 AAAAGGATGCCACGGAGT
*
72028 TATGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGATGCCACGGAGTTGTGGACTT
1 TGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTT-AAAGGATGCCACGGAGTTGTGGACTT
72093 TAAAAGGATGCCACGGAGT
65 TAAAAGGATGCCACGGAGT
* * * *
72112 TGTGGAC-TTAAAAGGATGCCACAGAGTTGTGGACTTAAAAGGATGCCACAGAGTTGTGGACTTT
1 TGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAGGATGCCACGGAGTTGTGGACTTT
* *
72176 AAAAGAAAATGCCACTGAGT
66 AAAAG--GATGCCACGGAGT
*
72196 CGTGGACTTTGAAAAGG
1 TGTGGACTTT-AAAAGG
72213 TCACAGTACT
Statistics
Matches: 1180, Mismatches: 156, Indels: 109
0.82 0.11 0.08
Matches are distributed among these distances:
81 1 0.00
82 358 0.30
83 169 0.14
84 85 0.07
85 36 0.03
86 50 0.04
87 24 0.02
88 108 0.09
89 115 0.10
90 102 0.09
91 49 0.04
92 34 0.03
93 13 0.01
94 18 0.02
95 8 0.01
96 10 0.01
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.26
Consensus pattern (83 bp):
TGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAGGATGCCACGGAGTTGTGGACTTT
AAAAGGATGCCACGGAGT
Found at i:71630 original size:110 final size:110
Alignment explanation
Indices: 71459--72212 Score: 987
Period size: 110 Copynumber: 6.8 Consensus size: 110
71449 TGTGTGGGCT
* * * * * * *
71459 TTAAAAGGGTGCCACTGACTTGTGGGCTTAAAAAGGATACCACGAAGTTGTGAAC-TTAAAAGGG
1 TTAAAAGGATGCCACGGAGTTGTGGACTT-AAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGG
71523 TGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGAC
65 TGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGAC
* * *
71569 TTTAAAGGATGCCACGGAGTTGTGGACTTAAAACGATGCCACGGAGTTGTGGACTTGAAAAGGGT
1 TTAAAAGGATGCCACGGAGTTGTGGACTTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGGT
* **
71634 GCCACAGAGTTGTGGACTTT-AAAGGG-GACCACAAAGTTGTGGAC
66 GCCACGGAGTTGTGGACTTTAAAAGGGTG-CCACGGAGTTGTGGAC
* * *
71678 TTAAAACGATGCCACAGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGG
1 TTAAAAGGATGCCACGGAGTTGTGGAC-TTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGG
*
71743 TGCCACGGAGTTGTGGACTTTAAAAGGTTGCCACGGAGTTGTGGAC
65 TGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGAC
* * * * * *
71789 TTTAAAGGGTACCACGGAGTTGTTGACTTAAAACGATGCCACAGAGTTGTGGACTTTAAAAGGGT
1 TTAAAAGGATGCCACGGAGTTGTGGACTTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGGT
* * *
71854 GCCACGGAGTTGTGGACTTT-AAAGGGTACCATGGAGTTATGGAC
66 GCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGAC
* * *
71898 TTAAAACGATGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACAGAGTTGTGGACTTTAAAAGGG
1 TTAAAAGGATGCCACGGAGTTGTGGAC-TTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGG
* * **
71963 TACCACGGAGTTATGGACTTT-AAAGGGTATCACGGAGTTGTGGAC
65 TGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGAC
* * * * * *
72008 TTAAAACGATGCTACGGAATTATGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGA
1 TTAAAAGGATGCCACGGAGTTGTGGAC-TTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGG
*
72073 TGCCACGGAGTTGTGGACTTTAAAAGGATGCCACGGAGTTGTGGAC
65 TGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGAC
* * *
72119 TTAAAAGGATGCCACAGAGTTGTGGACTTAAAAGGATGCCACAGAGTTGTGGACTTTAAAAGAAA
1 TTAAAAGGATGCCACGGAGTTGTGGACTTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAG--G
* * *
72184 ATGCCACTGAGTCGTGGACTTTGAAAAGG
64 GTGCCACGGAGTTGTGGACTTT-AAAAGG
72213 TCACAGTACT
Statistics
Matches: 566, Mismatches: 68, Indels: 17
0.87 0.10 0.03
Matches are distributed among these distances:
108 1 0.00
109 107 0.19
110 348 0.61
111 83 0.15
112 21 0.04
113 6 0.01
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.25
Consensus pattern (110 bp):
TTAAAAGGATGCCACGGAGTTGTGGACTTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGGT
GCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGAC
Found at i:80483 original size:20 final size:20
Alignment explanation
Indices: 80451--80565 Score: 131
Period size: 20 Copynumber: 5.8 Consensus size: 20
80441 AAAAAGACAT
*
80451 AATGTATCAATACATTGAAA
1 AATGTATCGATACATTGAAA
* * *
80471 AATATATCGATACATTCATA
1 AATGTATCGATACATTGAAA
* *
80491 TATGTATCGATATATTGAAA
1 AATGTATCGATACATTGAAA
* *
80511 AATGTATCGATACATTCATA
1 AATGTATCGATACATTGAAA
* * *
80531 CATGTATCGATATATTGAAG
1 AATGTATCGATACATTGAAA
80551 AATGTATCGATACAT
1 AATGTATCGATACAT
80566 CTGGGTAAAA
Statistics
Matches: 75, Mismatches: 20, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 75 1.00
ACGTcount: A:0.42, C:0.11, G:0.12, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTGAAA
Found at i:80496 original size:40 final size:39
Alignment explanation
Indices: 80448--80565 Score: 182
Period size: 40 Copynumber: 3.0 Consensus size: 39
80438 GGTAAAAAGA
* * *
80448 CATAATGTATCAATACATTGAAAAATATATCGATACATT
1 CATAATGTATCGATATATTGAAAAATGTATCGATACATT
80487 CATATATGTATCGATATATTGAAAAATGTATCGATACATT
1 CATA-ATGTATCGATATATTGAAAAATGTATCGATACATT
*
80527 CATACATGTATCGATATATTGAAGAATGTATCGATACAT
1 CATA-ATGTATCGATATATTGAAAAATGTATCGATACAT
80566 CTGGGTAAAA
Statistics
Matches: 73, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
39 4 0.05
40 69 0.95
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.35
Consensus pattern (39 bp):
CATAATGTATCGATATATTGAAAAATGTATCGATACATT
Found at i:80905 original size:51 final size:51
Alignment explanation
Indices: 80829--80946 Score: 173
Period size: 51 Copynumber: 2.3 Consensus size: 51
80819 TTATTTCTGA
* * *
80829 GGGGATACTCTAACCCCGGTTTTATTTTCAAAACACCAAATTTTCACCATC
1 GGGGATACTCCAACCCCGGTTTTATTTCCAAAACACCAAATTTTCACAATC
* * *
80880 GGGGATACTCCAACCCCGGTTTTATTTCCAAAACATCAATTTTTCACAATT
1 GGGGATACTCCAACCCCGGTTTTATTTCCAAAACACCAAATTTTCACAATC
*
80931 GGAGATACTCCAACCC
1 GGGGATACTCCAACCC
80947 TGTTATTTTT
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 60 1.00
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.30
Consensus pattern (51 bp):
GGGGATACTCCAACCCCGGTTTTATTTCCAAAACACCAAATTTTCACAATC
Found at i:80999 original size:130 final size:129
Alignment explanation
Indices: 80762--81155 Score: 563
Period size: 130 Copynumber: 3.0 Consensus size: 129
80752 TGGTGTTTAC
* * * *
80762 ACCCCGGTTTTATTTTCAAAACATCAATTTTCCATAATTGGGGATACTCCAACCCTGTTATTTCT
1 ACCCCGGTTTTATTTCCAAAACATCAATTTTTCACAATTGGGGATACTCCAACCCTGTTATTTTT
* *
80827 GAGGGGATACTCTAACCCCGGTTTTATTTTCAAAACACCAAATTTTCACCATCGGGGATACTCCA
66 GAGGGGATACTCCAA-CCCAGTTTTATTTTCAAAACACCAAATTTTCACCATCGGGGATACTCCA
*
80892 ACCCCGGTTTTATTTCCAAAACATCAATTTTTCACAATTGGAGATACTCCAACCCTGTTATTTTT
1 ACCCCGGTTTTATTTCCAAAACATCAATTTTTCACAATTGGGGATACTCCAACCCTGTTATTTTT
* * *
80957 GAGAGGATACTCCAACCCTAGTTTTATTTCCAAAACAGCAAATTTTCACCATCGGGGATACTCCA
66 GAGGGGATACTCCAACCC-AGTTTTATTTTCAAAACACCAAATTTTCACCATCGGGGATACTCCA
* * ** * *
81022 ACCCCGATTTTATTTCCAAAACTTTGATTTTTCACAATCGGGGATACTCCAACCCTGTTATTTTC
1 ACCCCGGTTTTATTTCCAAAACATCAATTTTTCACAATTGGGGATACTCCAACCCTGTTATTTTT
* * * * * *
81087 GAGGGGATACTCCAACTCCAATTTTATTTTTAAAACACCGATTTTTCGCAATCGGGGATACTCCA
66 GAGGGGATACTCCAAC-CCAGTTTTATTTTCAAAACACCAAATTTTCACCATCGGGGATACTCCA
81152 ACCC
1 ACCC
81156 TGTTATTTTC
Statistics
Matches: 236, Mismatches: 26, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
129 3 0.01
130 231 0.98
131 2 0.01
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.33
Consensus pattern (129 bp):
ACCCCGGTTTTATTTCCAAAACATCAATTTTTCACAATTGGGGATACTCCAACCCTGTTATTTTT
GAGGGGATACTCCAACCCAGTTTTATTTTCAAAACACCAAATTTTCACCATCGGGGATACTCCA
Found at i:81016 original size:51 final size:52
Alignment explanation
Indices: 80961--81077 Score: 157
Period size: 51 Copynumber: 2.3 Consensus size: 52
80951 ATTTTTGAGA
*
80961 GGATACTCCAACCCTAG-TTTTATTTCCAAAACAGCAAATTTTCACCATCGG
1 GGATACTCCAACCCTAGATTTTATTTCCAAAACAGCAAATTTTCACAATCGG
* **** *
81012 GGATACTCCAACCC-CGATTTTATTTCCAAAACTTTGATTTTTCACAATCGG
1 GGATACTCCAACCCTAGATTTTATTTCCAAAACAGCAAATTTTCACAATCGG
81063 GGATACTCCAACCCT
1 GGATACTCCAACCCT
81078 GTTATTTTCG
Statistics
Matches: 57, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
50 1 0.02
51 56 0.98
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (52 bp):
GGATACTCCAACCCTAGATTTTATTTCCAAAACAGCAAATTTTCACAATCGG
Found at i:81093 original size:79 final size:78
Alignment explanation
Indices: 81010--81200 Score: 256
Period size: 79 Copynumber: 2.4 Consensus size: 78
81000 TTTCACCATC
***
81010 GGGGATACTCCAACCCCGATTTTATTTCCAAAACTTTGATTTTTCACAATCGGGGATACTCCAAC
1 GGGGATACTCCAACCCC-ATTTTATTTCCAAAACACCGATTTTTCACAATCGGGGATACTCCAAC
*
81075 CCTGTTATTTTCGA
65 CCTGTTATTTTCAA
* ** *
81089 GGGGATACTCCAACTCCAATTTTATTTTTAAAACACCGATTTTTCGCAATCGGGGATACTCCAAC
1 GGGGATACTCCAAC-CCCATTTTATTTCCAAAACACCGATTTTTCACAATCGGGGATACTCCAAC
81154 CCTGTTATTTTCAA
65 CCTGTTATTTTCAA
* * *
81168 GGAGATACTCCAATCCCAGTTTTATCTCCAAAA
1 GGGGATACTCCAACCCCA-TTTTATTTCCAAAA
81201 TATTAAACTT
Statistics
Matches: 96, Mismatches: 14, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
78 3 0.03
79 91 0.95
80 2 0.02
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (78 bp):
GGGGATACTCCAACCCCATTTTATTTCCAAAACACCGATTTTTCACAATCGGGGATACTCCAACC
CTGTTATTTTCAA
Found at i:87576 original size:155 final size:152
Alignment explanation
Indices: 87167--87967 Score: 563
Period size: 155 Copynumber: 5.2 Consensus size: 152
87157 TTTCATTATT
* * * ** *
87167 TATGATTATTGTTGAG-CCTTTTAAGGTTACCGAGATACTTTCATATCAAAGGTATA-ATTCAAA
1 TATGATTATTTTTGAGTCC-TTTAAGGTTACCGAGATACTTTTATATGAAA-GTATACCCT-AAG
* * ** * * **
87230 GGTATTTGGGTAATTTTTTTAAAACCAAGT-CTAGTGTAGTTACCGGGATGCTTTTATGCCAAAG
63 GGCATTT-TGTAA-TTTCCTAAAACCAAGTCCGA-TGTAGTCACCAAGATGCTTTTATGCCAAAG
* * *
87294 GTGTAG-ATTTAAGATAGGTTCACCATTC
125 ATGT-GCATTTAGGATAGGTTCACCCTTC
* ** * * *** * * * ** *
87322 CATGATTA-TTTCAAGTTCTTTAAGGTCATTAAGATGCTTTTAAAATAAAAGTAGT-CTTTACGG
1 TATGATTATTTTTGAGTCCTTTAAGGTTACCGAGATACTTTT-ATATGAAAGTA-TACCCTAAGG
** * ** *** *
87385 GCATTTTAGTAATTTCCCTTGGAATCAAGTTTGATGTAGTCACTGGGATGCTTTTATGCCAAAGG
64 GCATTTT-GTAATTT-CC-TAAAACCAAGTCCGATGTAGTCACCAAGATGCTTTTATGCCAAAGA
** * *
87450 TGTGTGTTTAGGACAAGTTCACCCTT-
126 TGTGCATTTAGGATAGGTTCACCCTTC
** * *
87476 TAATGATTATTTTTGAGTTTTTTAAGGTTACCGAGATATTTTTACT-TCGAAAGTATACCCCAAG
1 T-ATGATTATTTTTGAGTCCTTTAAGGTTACCGAGATACTTTTA-TAT-GAAAGTATACCCTAAG
* *
87540 GGCATTTTGTTAATTATCCTAAAACTAAGTCCGATGTAGTCACCGAGATGCTTTGT-T---AAAG
63 GGCATTTTG-TAATT-TCCTAAAACCAAGTCCGATGTAGTCACCAAGATGCTTT-TATGCCAAAG
*
87601 ATGTGCATTTAGGATATGTTCACCCTT-
125 ATGTGCATTTAGGATAGGTTCACCCTTC
* * * * *
87628 TCATGATCATTTTT-AGTCCTTTAAGGTAACCGGGATGCTTTCAATATGAAAGTAGT-CCCTAAG
1 T-ATGATTATTTTTGAGTCCTTTAAGGTTACCGAGATACTTT-TATATGAAAGTA-TACCCTAAG
* * *
87691 GGTATTTTAGTAATTTTTCCTAGAACCAAGTCCGATGTAGTCACCAAGATGCTTTTATGCCAAAA
63 GGCATTTT-GTAA--TTTCCTAAAACCAAGTCCGATGTAGTCACCAAGATGCTTTTATGCCAAAG
87756 ATGTGCATTTAGGATAGGTTCACCCTTC
125 ATGTGCATTTAGGATAGGTTCACCCTTC
* * * * * * * * *
87784 TTTGACTATTTTTGAGTCCCTTAGGGTTATCGAGATACTGTTATGTTAAAGGTATACCTTAAGGG
1 TATGATTATTTTTGAGTCCTTTAAGGTTACCGAGATACTTTTATATGAAA-GTATACCCTAAGGG
* * * *
87849 CATTTTGGTCATTTCCTCTAAAACCAAGTTCGATGAAGTCATCAAGATGCTTTTATGCCAAAG-T
65 CATTTT-GTAATTT-C-CTAAAACCAAGTCCGATGTAGTCACCAAGATGCTTTTATGCCAAAGAT
* *
87913 GTGCATCTAGGATAGGTTCATCCTTC
127 GTGCATTTAGGATAGGTTCACCCTTC
*
87939 TATGATTATTTTTGAGTCCTTTAGGGTTA
1 TATGATTATTTTTGAGTCCTTTAAGGTTA
87968 TCAGGATACT
Statistics
Matches: 509, Mismatches: 104, Indels: 66
0.75 0.15 0.10
Matches are distributed among these distances:
151 46 0.09
152 78 0.15
153 5 0.01
154 39 0.08
155 209 0.41
156 131 0.26
157 1 0.00
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.38
Consensus pattern (152 bp):
TATGATTATTTTTGAGTCCTTTAAGGTTACCGAGATACTTTTATATGAAAGTATACCCTAAGGGC
ATTTTGTAATTTCCTAAAACCAAGTCCGATGTAGTCACCAAGATGCTTTTATGCCAAAGATGTGC
ATTTAGGATAGGTTCACCCTTC
Found at i:87744 original size:307 final size:309
Alignment explanation
Indices: 87354--87961 Score: 660
Period size: 307 Copynumber: 2.0 Consensus size: 309
87344 AGGTCATTAA
* ** * * * **
87354 GATGCTTTTAAAATAAAAGTAGTCTTTACGGGCATTTTAGTAATTTCCCTTGGAATCAAGTTTGA
1 GATGCTTTCAAAATAAAAGTAGTCCCTAAGGGCATTTTAGTAATTTCCCTTAGAACCAAGTCCGA
*** ** ** *
87419 TGTAGTCACTGGGATGCTTTTATGCCAAAGGTGTGTGTTTAGGACAAGTTCACCCTT-TAATGAT
66 TGTAGTCACCAAGATGCTTTTATGCCAAAAATGTGCATTTAGGACAAGTTCACCCTTCT-ATGAC
*** * *
87483 TATTTTTGAGTTTTTTAAGGTTACCGAGATATTTTTACT-TCGAAA-GTATACCCCAAGGGCATT
130 TATTTTTGAGTCCCTTAAGGTTACCGAGATACTGTTA-TGT-GAAAGGTATACCCCAAGGGCATT
* * * *
87546 TTGTTAATTAT-C-CTAAAACTAAGTCCGATGTAGTCACCGAGATGCTTTGT-T-AAAGATGTGC
193 TTGGTAATT-TCCTCTAAAACCAAGTCCGATGAAGTCACCAAGATGCTTT-TATCAAAG-TGTGC
* *
87607 ATTTAGGATATGTTCACCCTT-TCATGATCATTTTT-AGTCCTTTAAGGTAACCGG
255 ATCTAGGATAGGTTCACCCTTCT-ATGATCATTTTTGAGTCCTTTAAGGTAACCGG
* * * *
87661 GATGCTTTCAATATGAAAGTAGTCCCTAAGGGTATTTTAGTAATTTTTCC-TAGAACCAAGTCCG
1 GATGCTTTCAAAATAAAAGTAGTCCCTAAGGGCATTTTAGTAA-TTTCCCTTAGAACCAAGTCCG
* * *
87725 ATGTAGTCACCAAGATGCTTTTATGCCAAAAATGTGCATTTAGGATAGGTTCACCCTTCTTTGAC
65 ATGTAGTCACCAAGATGCTTTTATGCCAAAAATGTGCATTTAGGACAAGTTCACCCTTCTATGAC
* * * **
87790 TATTTTTGAGTCCCTTAGGGTTATCGAGATACTGTTATGTTAAAGGTATACCTTAAGGGCATTTT
130 TATTTTTGAGTCCCTTAAGGTTACCGAGATACTGTTATGTGAAAGGTATACCCCAAGGGCATTTT
* * *
87855 GGTCATTTCCTCTAAAACCAAGTTCGATGAAGTCATCAAGATGCTTTTATGCCAAAGTGTGCATC
195 GGTAATTTCCTCTAAAACCAAGTCCGATGAAGTCACCAAGATGCTTTTAT--CAAAGTGTGCATC
* *
87920 TAGGATAGGTTCATCCTTCTATGATTATTTTTGAGTCCTTTA
258 TAGGATAGGTTCACCCTTCTATGATCATTTTTGAGTCCTTTA
87962 GGGTTATCAG
Statistics
Matches: 245, Mismatches: 44, Indels: 20
0.79 0.14 0.06
Matches are distributed among these distances:
306 5 0.02
307 154 0.63
308 38 0.16
310 34 0.14
311 14 0.06
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.38
Consensus pattern (309 bp):
GATGCTTTCAAAATAAAAGTAGTCCCTAAGGGCATTTTAGTAATTTCCCTTAGAACCAAGTCCGA
TGTAGTCACCAAGATGCTTTTATGCCAAAAATGTGCATTTAGGACAAGTTCACCCTTCTATGACT
ATTTTTGAGTCCCTTAAGGTTACCGAGATACTGTTATGTGAAAGGTATACCCCAAGGGCATTTTG
GTAATTTCCTCTAAAACCAAGTCCGATGAAGTCACCAAGATGCTTTTATCAAAGTGTGCATCTAG
GATAGGTTCACCCTTCTATGATCATTTTTGAGTCCTTTAAGGTAACCGG
Found at i:88009 original size:155 final size:151
Alignment explanation
Indices: 87694--88150 Score: 413
Period size: 155 Copynumber: 3.0 Consensus size: 151
87684 CCCTAAGGGT
* * * * *
87694 ATTTTAGTAATTTTTCCTAGAACCAAGTCCGATGTAGTCACCAAGATGCTTTTATGCCAAAAATG
1 ATTTTAGTAA-TTTTACTAAAACCAAGTTCGATGAAGTCA-CAAGATGCTTTTATGCC-AAAGTG
* * * *
87759 TGCATTTAGGATAGGTTCACCCTTCTTTGACTATTTTTGAGTCCCTTAGGGTTATC-GAGATACT
63 TGCATTTAGGATAGGTTCATCCTTCTATGATTATTTTTGAGTCCTTTAGGGTTATCAG-GATACT
* ***
87823 GTTATGTTAAAGGTATACCTTAAGGGC
127 -TTATGTTGAAGGTATACC-TAAAAAC
* *
87850 ATTTTGGTCATTTCCT-CTAAAACCAAGTTCGATGAAGTCATCAAGATGCTTTTATGCCAAAGTG
1 ATTTTAGTAATTT--TACTAAAACCAAGTTCGATGAAGTCA-CAAGATGCTTTTATGCCAAAGTG
*
87914 TGCATCTAGGATAGGTTCATCCTTCTATGATTATTTTTGAGTCCTTTAGGGTTATCAGGATACTT
63 TGCATTTAGGATAGGTTCATCCTTCTATGATTATTTTTGAGTCCTTTAGGGTTATCAGGATACTT
* *
87979 TAATGTCGAAGGTATATTCC-AAAAAT
128 T-ATGTTGAAGGTATA--CCTAAAAAC
* * * *
88005 ATTTTAGTAATTTTACTAGAACCAAGTTCGA-CATAGTCACCAGAATG-TTTTCATGTCAAATGT
1 ATTTTAGTAATTTTACTAAAACCAAGTTCGATGA-AGTCACAAG-ATGCTTTT-ATGCCAAA-GT
** * * ** ** * * * *
88068 GTATATTTGGGATAAGTTTGTTATT-TATGATTATTTTCGAGTCTTTTAAGGTTATCAAGATACT
62 GTGCATTTAGGATAGGTTCATCCTTCTATGATTATTTTTGAGTCCTTTAGGGTTATCAGGATAC-
88132 TTTATGTTGAAGGTATACC
126 TTTATGTTGAAGGTATACC
88151 CAATGGCATT
Statistics
Matches: 251, Mismatches: 38, Indels: 28
0.79 0.12 0.09
Matches are distributed among these distances:
152 2 0.01
153 9 0.04
154 79 0.31
155 111 0.44
156 47 0.19
157 3 0.01
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.39
Consensus pattern (151 bp):
ATTTTAGTAATTTTACTAAAACCAAGTTCGATGAAGTCACAAGATGCTTTTATGCCAAAGTGTGC
ATTTAGGATAGGTTCATCCTTCTATGATTATTTTTGAGTCCTTTAGGGTTATCAGGATACTTTAT
GTTGAAGGTATACCTAAAAAC
Found at i:92044 original size:33 final size:34
Alignment explanation
Indices: 92007--92093 Score: 83
Period size: 33 Copynumber: 2.6 Consensus size: 34
91997 AAAATTTTTA
*
92007 TATATTAATAATTTATTTTATTTCATGTATAT-T
1 TATATTAATAATTTATTTTATGTCATGTATATAT
*
92040 TATA-TATATATATGTA-TTTATGTCATGTATATAT
1 TATATTA-ATA-ATTTATTTTATGTCATGTATATAT
* *
92074 TATTTTCAT-ATTATATTTTA
1 TATATTAATAATT-TATTTTA
92094 AATATTTTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 11
0.73 0.08 0.19
Matches are distributed among these distances:
32 4 0.09
33 24 0.56
34 14 0.33
35 1 0.02
ACGTcount: A:0.33, C:0.03, G:0.05, T:0.59
Consensus pattern (34 bp):
TATATTAATAATTTATTTTATGTCATGTATATAT
Found at i:92131 original size:11 final size:11
Alignment explanation
Indices: 92069--92138 Score: 52
Period size: 11 Copynumber: 5.8 Consensus size: 11
92059 ATGTCATGTA
92069 TATATTATTTT
1 TATATTATTTT
*
92080 CATATTATATTT
1 TATATTAT-TTT
92092 TAAATATT-TTTT
1 T--ATATTATTTT
*
92104 TATAAATATCATATT
1 TAT--AT-T-ATTTT
92119 TATATTATTTT
1 TATATTATTTT
92130 TATATTATT
1 TATATTATT
92139 AAAGTAAAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 16
0.70 0.06 0.24
Matches are distributed among these distances:
10 2 0.04
11 20 0.43
12 10 0.21
13 4 0.09
14 5 0.11
15 6 0.13
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (11 bp):
TATATTATTTT
Found at i:92382 original size:17 final size:18
Alignment explanation
Indices: 92362--92401 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
92352 GAGAAAGTTG
92362 GAAAAAAAG-AAAAGAAA
1 GAAAAAAAGAAAAAGAAA
*
92379 GAAAATAAGAAAAAGAAA
1 GAAAAAAAGAAAAAGAAA
*
92397 TAAAA
1 GAAAA
92402 GAAAATTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.80, C:0.00, G:0.15, T:0.05
Consensus pattern (18 bp):
GAAAAAAAGAAAAAGAAA
Found at i:92549 original size:22 final size:21
Alignment explanation
Indices: 92520--92574 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 21
92510 ATCATATTCA
92520 TTTTTTATATTATGTTT-TAAT
1 TTTTTTATATTATGTTTGT-AT
*
92541 TATTTTTATTTTATGTTTGTAT
1 T-TTTTTATATTATGTTTGTAT
92563 TTTTTGTATATT
1 TTTTT-TATATT
92575 TAAAATAGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
21 5 0.17
22 23 0.79
23 1 0.03
ACGTcount: A:0.20, C:0.00, G:0.07, T:0.73
Consensus pattern (21 bp):
TTTTTTATATTATGTTTGTAT
Found at i:92554 original size:11 final size:12
Alignment explanation
Indices: 92522--92558 Score: 51
Period size: 11 Copynumber: 3.2 Consensus size: 12
92512 CATATTCATT
92522 TTTTATATTATG
1 TTTTATATTATG
92534 TTTTA-ATTAT-
1 TTTTATATTATG
*
92544 TTTTATTTTATG
1 TTTTATATTATG
92556 TTT
1 TTT
92559 GTATTTTTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
10 5 0.23
11 9 0.41
12 8 0.36
ACGTcount: A:0.22, C:0.00, G:0.05, T:0.73
Consensus pattern (12 bp):
TTTTATATTATG
Found at i:93223 original size:23 final size:21
Alignment explanation
Indices: 93197--93243 Score: 67
Period size: 23 Copynumber: 2.1 Consensus size: 21
93187 GTCGTATTCA
*
93197 TTTTTATATTATGTTTTAATTAT
1 TTTTTATATTATATTTT--TTAT
93220 TTTTTATATTATATTTTTTAT
1 TTTTTATATTATATTTTTTAT
93241 TTT
1 TTT
93244 AATTTAAAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 7 0.30
23 16 0.70
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.74
Consensus pattern (21 bp):
TTTTTATATTATATTTTTTAT
Found at i:93224 original size:11 final size:12
Alignment explanation
Indices: 93197--93241 Score: 58
Period size: 12 Copynumber: 3.8 Consensus size: 12
93187 GTCGTATTCA
93197 TTTTTATATTAT
1 TTTTTATATTAT
*
93209 GTTTTA-ATTAT
1 TTTTTATATTAT
93220 TTTTTATATTAT
1 TTTTTATATTAT
93232 ATTTTT-TATT
1 -TTTTTATATT
93242 TTAATTTAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
11 10 0.34
12 14 0.48
13 5 0.17
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.73
Consensus pattern (12 bp):
TTTTTATATTAT
Found at i:93538 original size:24 final size:25
Alignment explanation
Indices: 93508--93557 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 25
93498 AAAATAATAA
93508 ATTTTTACA-TTAAAAT-TAAAATTT
1 ATTTTTA-ATTTAAAATATAAAATTT
*
93532 ATTTTTAATTTTAAATATAAAATTT
1 ATTTTTAATTTAAAATATAAAATTT
93557 A
1 A
93558 AATACATAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 1 0.04
24 13 0.57
25 9 0.39
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (25 bp):
ATTTTTAATTTAAAATATAAAATTT
Found at i:93595 original size:17 final size:18
Alignment explanation
Indices: 93575--93615 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
93565 AAATATTATT
93575 TAATAAAATTTATT-TT-A
1 TAATAAAATTT-TTATTAA
*
93592 TAATTAAATTTTTATTAA
1 TAATAAAATTTTTATTAA
93610 TAATAA
1 TAATAA
93616 TTAAAATTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
16 2 0.10
17 12 0.60
18 6 0.30
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TAATAAAATTTTTATTAA
Found at i:93618 original size:679 final size:670
Alignment explanation
Indices: 92362--93623 Score: 1749
Period size: 679 Copynumber: 1.9 Consensus size: 670
92352 GAGAAAGTTG
*
92362 GAAAAAAAGAAAAGAAAGAAAATAAGAAAAAGAAATAAAAGAAAATTTAATATATTTATATTTAT
1 GAAAAAAAGAAAAGAAAGAAAAAAAGAAAAAGAAATAAAAGAAAATTTAATATATTTATATTTAT
** *
92427 ATTCGTATTATTTTTTATTATTTAAAGTATTATAAATTTATATAATATTGTACACATATATATTT
66 ATTAATATTATTTTTTATTATTTAAAATATTATAAATTTATATAATATTGTACACA-ATATATTT
* * *
92492 ATATGTTATTATATTCGTATCATATTCATTTTTTATATTATGTTTTAATTATTTTTATTTTATGT
130 ATATGTTATTATATTCATATCATATTCATTTTTTATATTATGTTTTAATTATTTTTATATTATAT
* *
92557 TTGTATTTTTTGTATATTTAAAATAGTATAAATTTATATAAATTTTTACACATTAATTATTTATA
195 TTGTATTATTTGTATATTTAAAATAATATAAATTTATATAAATTTTTACACATTAATTATTTATA
* * * * *
92622 TATGTATATTTCGACACGTTAGTGTAATTAAATAATATATTTAAAATGATAAATTTTTAAGTTGA
260 TATGTATATTTCAACACGTTAATATAATTAAATAATATATTTAAAATAATAAATTTGTAAGTTGA
* * *
92687 TGACCATCGATTTAAAATTTATACTTTATTCTAAATGCAAATTTAAATAAATAAATAAATATTAT
325 TGACAATCGATTTAAAATTTATACTCTATTCTAAAAGCAAATTT--ATAAATAAATAAATATTAT
* *
92752 TTAATAAAATTTAATTTTTATTAAAAACATAAAAAAATTAAAAATGTCATTATTTATTTTATTTT
388 TTAATAAAATTTAATTTTTATTAAAAACATAAAAAAATTAAAAATATCATTAATTATTTTATTTT
* * * * *
92817 TAAATGATGTGTTTAAAGTAATAAATTTTTGTTTTAACTCACAAAACAGTTAAATTTTATTTTTA
453 TAAATAATATATTTAAAATAATAAA---TTGTTTTAAC-CACAAAACAGTTAAAATTTATTTTTA
* *
92882 ATTTTAAATATAAATTTAAATACATAATTACTATTTAATAAAATTTATTTTATAATTAAATTTTT
514 ATTTTAAATATAAATTTAAATACATAATTAATATTTAATAAAATTTATTTAATAATTAAATTTTT
92947 ATTAATAATATAAAATTAACTAAATAAATAAATTTGGTGCTAACACATGTTCTACTTTTGAGTTT
579 ATTAATAATATAAAATTAACTAAATAAATAAATTTGGTGCTAACACATGTTCTACTTTTGAGTTT
93012 TTTTTCAACGAGAGATAAAGATGCAAA
644 TTTTTCAACGAGAGATAAAGATGCAAA
93039 GAAAAAAAGAAAA-AAAGAAAGAAAAGGAAAGAGAGAAATAAAA-AAAATTTAATATATTTATAT
1 GAAAAAAAGAAAAGAAAGAAA-AAAA-GAAA-A-AGAAATAAAAGAAAATTTAATATATTTATAT
* * * *
93102 TTATATTAATGTTATTTTTTATTGTTTAAAATATTATAAATTTGTATAATATTTTACAC-ATATA
62 TTATATTAATATTATTTTTTATTATTTAAAATATTATAAATTTATATAATATTGTACACAATATA
* * * *
93166 TTTATATGTTCTTATATTTATGTCGTATTCA-TTTTTATATTATGTTTTAATTATTTTTTATATT
127 TTTATATGTTATTATATTCATATCATATTCATTTTTTATATTATGTTTTAATTA-TTTTTATATT
* * *
93230 ATATTT-T-TTATTT-TA-ATTTAAAGTAATATAAATTTATATAAATTTTTATATATTAATTATT
191 ATATTTGTATTATTTGTATATTTAAAATAATATAAATTTATATAAATTTTTACACATTAATTATT
* **
93291 TATTTATGTATA-TT-AATTCGTTAATATAATTAAATAATATATTTAAAATAATAAATTTGTATA
256 TATATATGTATATTTCAACACGTTAATATAATTAAATAATATATTTAAAATAATAAATTTGTA-A
* * *
93354 -TTGATATATAATCGATTTAAAATTTATA-TCCTATTCTAAAAGTAAA-TT-TAAATAAATAAAT
320 GTTGAT-GACAATCGATTTAAAATTTATACT-CTATTCTAAAAGCAAATTTATAAATAAATAAAT
* *
93415 ATTATTTAATAAAATTTAATTTTTATTAAAAA-A-ATAAAAATTAAAAAATATTATTAATTATTT
383 ATTATTTAATAAAATTTAATTTTTATTAAAAACATAAAAAAATT-AAAAATATCATTAATTATTT
**
93478 TATTTTTAAATAATATATTTAAAATAATAAA-T-TTTT-A-CATTAAA-A-TTAAAATTTATTTT
447 TATTTTTAAATAATATATTTAAAATAATAAATTGTTTTAACCACAAAACAGTTAAAATTTATTTT
* * *
93537 TAATTTTAAATATAAAATTTAAATACATAAATATTATTTAATAAAATTTATTTTATAATTAAATT
512 TAATTTTAAATAT-AAATTTAAATACATAATTAATATTTAATAAAATTTATTTAATAATTAAATT
93602 TTTATTAATAATAATTAAAATT
576 TTTATTAATAAT-A-TAAAATT
93624 TATAAAATAA
Statistics
Matches: 526, Mismatches: 47, Indels: 41
0.86 0.08 0.07
Matches are distributed among these distances:
657 26 0.05
658 62 0.12
659 6 0.01
660 7 0.01
661 1 0.00
662 4 0.01
663 1 0.00
666 8 0.02
667 45 0.09
668 45 0.09
671 48 0.09
672 35 0.07
673 53 0.10
674 2 0.00
675 5 0.01
676 30 0.06
677 61 0.12
678 4 0.01
679 73 0.14
680 10 0.02
ACGTcount: A:0.44, C:0.04, G:0.05, T:0.46
Consensus pattern (670 bp):
GAAAAAAAGAAAAGAAAGAAAAAAAGAAAAAGAAATAAAAGAAAATTTAATATATTTATATTTAT
ATTAATATTATTTTTTATTATTTAAAATATTATAAATTTATATAATATTGTACACAATATATTTA
TATGTTATTATATTCATATCATATTCATTTTTTATATTATGTTTTAATTATTTTTATATTATATT
TGTATTATTTGTATATTTAAAATAATATAAATTTATATAAATTTTTACACATTAATTATTTATAT
ATGTATATTTCAACACGTTAATATAATTAAATAATATATTTAAAATAATAAATTTGTAAGTTGAT
GACAATCGATTTAAAATTTATACTCTATTCTAAAAGCAAATTTATAAATAAATAAATATTATTTA
ATAAAATTTAATTTTTATTAAAAACATAAAAAAATTAAAAATATCATTAATTATTTTATTTTTAA
ATAATATATTTAAAATAATAAATTGTTTTAACCACAAAACAGTTAAAATTTATTTTTAATTTTAA
ATATAAATTTAAATACATAATTAATATTTAATAAAATTTATTTAATAATTAAATTTTTATTAATA
ATATAAAATTAACTAAATAAATAAATTTGGTGCTAACACATGTTCTACTTTTGAGTTTTTTTTCA
ACGAGAGATAAAGATGCAAA
Found at i:93632 original size:18 final size:21
Alignment explanation
Indices: 93591--93633 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
93581 AATTTATTTT
*
93591 ATAATTAAATTTTTATTAATA
1 ATAATTAAATATTTATTAATA
93612 ATAATTAAA-ATTTA-TAA-A
1 ATAATTAAATATTTATTAATA
93630 ATAA
1 ATAA
93634 AAATAAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 5 0.24
19 3 0.14
20 4 0.19
21 9 0.43
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (21 bp):
ATAATTAAATATTTATTAATA
Found at i:93632 original size:21 final size:22
Alignment explanation
Indices: 93591--93642 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 22
93581 AATTTATTTT
* *
93591 ATAATT-AAATTTTTATTAATA
1 ATAATTAAAATTTATATAAATA
93612 ATAATTAAAATTTATA-AAATA
1 ATAATTAAAATTTATATAAATA
* *
93633 AAAATAAAAA
1 ATAATTAAAA
93643 ATCTCAAGGA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
21 18 0.69
22 8 0.31
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (22 bp):
ATAATTAAAATTTATATAAATA
Found at i:94139 original size:13 final size:13
Alignment explanation
Indices: 94123--94164 Score: 52
Period size: 14 Copynumber: 3.3 Consensus size: 13
94113 CAAATAAAAA
94123 ATTTAATATTTTT
1 ATTTAATATTTTT
*
94136 ATTTCAATATTTAT
1 ATTT-AATATTTTT
94150 -TTTAAT-TTTTT
1 ATTTAATATTTTT
94161 ATTT
1 ATTT
94165 TTTCTTATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
11 4 0.16
12 6 0.24
13 7 0.28
14 8 0.32
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (13 bp):
ATTTAATATTTTT
Found at i:94513 original size:20 final size:22
Alignment explanation
Indices: 94470--94515 Score: 62
Period size: 20 Copynumber: 2.2 Consensus size: 22
94460 TCTCCTTAGT
94470 AATAAAAATTAAATATTTATAA
1 AATAAAAATTAAATATTTATAA
94492 AATAAAAA-T-AATATTTCA-AA
1 AATAAAAATTAAATATTT-ATAA
94512 AATA
1 AATA
94516 TTATCTTAGC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 13 0.57
21 2 0.09
22 8 0.35
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (22 bp):
AATAAAAATTAAATATTTATAA
Found at i:95652 original size:22 final size:24
Alignment explanation
Indices: 95609--95654 Score: 69
Period size: 22 Copynumber: 2.0 Consensus size: 24
95599 TTAAATAAAT
*
95609 TTTATATTTTTAAAATTTAATTTA
1 TTTATATTTTTAAAATTAAATTTA
95633 TTTATA-TTTT-AAATTAAATTTA
1 TTTATATTTTTAAAATTAAATTTA
95655 ATAAATTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 11 0.52
23 4 0.19
24 6 0.29
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (24 bp):
TTTATATTTTTAAAATTAAATTTA
Found at i:95687 original size:19 final size:18
Alignment explanation
Indices: 95650--95706 Score: 69
Period size: 19 Copynumber: 3.1 Consensus size: 18
95640 TTTAAATTAA
* *
95650 ATTTAATAAATTTTATTTT
1 ATTTAATAAAATAT-TTTT
95669 ATTTAGATAAAATATTTTT
1 ATTTA-ATAAAATATTTTT
*
95688 ATTTAATAAGATATTTTT
1 ATTTAATAAAATATTTTT
95706 A
1 A
95707 AAATTTAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
18 13 0.38
19 14 0.41
20 7 0.21
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (18 bp):
ATTTAATAAAATATTTTT
Found at i:95705 original size:18 final size:19
Alignment explanation
Indices: 95665--95706 Score: 68
Period size: 18 Copynumber: 2.3 Consensus size: 19
95655 ATAAATTTTA
95665 TTTTATTTAGATAAAATAT
1 TTTTATTTAGATAAAATAT
*
95684 TTTTATTTA-ATAAGATAT
1 TTTTATTTAGATAAAATAT
95702 TTTTA
1 TTTTA
95707 AAATTTAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 13 0.59
19 9 0.41
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (19 bp):
TTTTATTTAGATAAAATAT
Found at i:96178 original size:15 final size:16
Alignment explanation
Indices: 96157--96201 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 16
96147 AGGGTTTAAC
96157 ATTCGGGTTAATCGAG
1 ATTCGGGTTAATCGAG
* * *
96173 -TTCGGGTCATTCTAG
1 ATTCGGGTTAATCGAG
96188 ATTCGGGTTAATCG
1 ATTCGGGTTAATCG
96202 GGTTTAACAT
Statistics
Matches: 22, Mismatches: 6, Indels: 2
0.73 0.20 0.07
Matches are distributed among these distances:
15 12 0.55
16 10 0.45
ACGTcount: A:0.20, C:0.16, G:0.29, T:0.36
Consensus pattern (16 bp):
ATTCGGGTTAATCGAG
Found at i:96205 original size:53 final size:52
Alignment explanation
Indices: 96115--96219 Score: 138
Period size: 53 Copynumber: 2.0 Consensus size: 52
96105 TTGGGTTGTT
*
96115 TCGAATTCGGATCATTTTAAATTCAGGTCAATAGGGTTTAACATTCGGGTTAA
1 TCGAATTCGGATCATTCTAAATTCAGGTCAATAGGGTTTAACATTC-GGTTAA
* * * * * *
96168 TCGAGTTCGGGTCATTCTAGATTCGGGTTAATCGGGTTTAACATTCGGTTAA
1 TCGAATTCGGATCATTCTAAATTCAGGTCAATAGGGTTTAACATTCGGTTAA
96220 ATTAGGTTCA
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
52 6 0.13
53 39 0.87
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.36
Consensus pattern (52 bp):
TCGAATTCGGATCATTCTAAATTCAGGTCAATAGGGTTTAACATTCGGTTAA
Found at i:97422 original size:2 final size:2
Alignment explanation
Indices: 97415--97450 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
97405 TGCTTTAGGT
97415 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
97451 CACTTTGTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:102967 original size:24 final size:24
Alignment explanation
Indices: 102940--102987 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
102930 CACTATTGAC
102940 ATCCGT-GATGAATAAGAAATTGTT
1 ATCCGTAG-TGAATAAGAAATTGTT
102964 ATCCGTAGTGAATAAGAAATTGTT
1 ATCCGTAGTGAATAAGAAATTGTT
102988 CTCATAATAC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 22 0.96
25 1 0.04
ACGTcount: A:0.38, C:0.08, G:0.21, T:0.33
Consensus pattern (24 bp):
ATCCGTAGTGAATAAGAAATTGTT
Found at i:106725 original size:21 final size:21
Alignment explanation
Indices: 106700--106739 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
106690 ATAATGAACA
* *
106700 TTTAATTAGTTTTAAATTATT
1 TTTAATTACTATTAAATTATT
106721 TTTAATTACTATTAAATTA
1 TTTAATTACTATTAAATTA
106740 AATTATAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.57
Consensus pattern (21 bp):
TTTAATTACTATTAAATTATT
Found at i:115224 original size:50 final size:50
Alignment explanation
Indices: 115162--115271 Score: 152
Period size: 50 Copynumber: 2.2 Consensus size: 50
115152 TTATTTTTGA
* *
115162 GGGGATACTCCAACC-CTGGTTTTA-TTTCAAAACACCAATTTTTCACCATC
1 GGGGATACTCCAACCTC-GATTTTATTTTCAAAACACCAA-TTTTCACAATC
* *
115212 GGGGATACTCCAACCTCGATTTTATTTTCAAAACATCAATTTTCACAATT
1 GGGGATACTCCAACCTCGATTTTATTTTCAAAACACCAATTTTCACAATC
115262 GGGGATACTC
1 GGGGATACTC
115272 TAATCCTGTT
Statistics
Matches: 54, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
50 40 0.74
51 14 0.26
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.33
Consensus pattern (50 bp):
GGGGATACTCCAACCTCGATTTTATTTTCAAAACACCAATTTTCACAATC
Found at i:115227 original size:78 final size:78
Alignment explanation
Indices: 115023--115229 Score: 261
Period size: 79 Copynumber: 2.6 Consensus size: 78
115013 TCATTCATGT
* * * *
115023 TTTTATTTCTAAAATACCGATTTTCCACAATCGGGGATACTCCAACCTCGTTATTTCTAAGGTGA
1 TTTTATTTC-AAAACACCAATTTTTCACAATCGGGGATACTCCAACCTCGTTATTTCTAAGGGGA
115088 TACTCCAACCCCCA
65 TACTCCAACCCCCA
* * * * * * *
115102 TTTTATTTTCAAAACATCAATTTTTCATAATTGGGGATACTCTAACCTTGTTATTTTTGAGGGGA
1 TTTTA-TTTCAAAACACCAATTTTTCACAATCGGGGATACTCCAACCTCGTTATTTCTAAGGGGA
***
115167 TACTCCAACCCTGG
65 TACTCCAACCCCCA
*
115181 TTTTATTTCAAAACACCAATTTTTCACCATCGGGGATACTCCAACCTCG
1 TTTTATTTCAAAACACCAATTTTTCACAATCGGGGATACTCCAACCTCG
115230 ATTTTATTTT
Statistics
Matches: 107, Mismatches: 20, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
78 38 0.36
79 65 0.61
80 4 0.04
ACGTcount: A:0.28, C:0.24, G:0.13, T:0.36
Consensus pattern (78 bp):
TTTTATTTCAAAACACCAATTTTTCACAATCGGGGATACTCCAACCTCGTTATTTCTAAGGGGAT
ACTCCAACCCCCA
Found at i:115354 original size:50 final size:50
Alignment explanation
Indices: 115290--115402 Score: 149
Period size: 50 Copynumber: 2.3 Consensus size: 50
115280 TTATTTCTAA
* *
115290 GGGATACTCCAACCCCGATTTTATTTCCAAAACA-CTAATTTTCCACCATC-
1 GGGATACTCCAACCCCAATTTTATTTCCAAAACATC-AA-TTTCCACAATCG
* * *
115340 GGGATACTCTAACCCTAATTTTATTTCCAAAACATCGATTTCCACAATCG
1 GGGATACTCCAACCCCAATTTTATTTCCAAAACATCAATTTCCACAATCG
115390 GGGATACTCCAAC
1 GGGATACTCCAAC
115403 TCTGTTATTT
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
49 10 0.18
50 44 0.80
51 1 0.02
ACGTcount: A:0.31, C:0.29, G:0.11, T:0.29
Consensus pattern (50 bp):
GGGATACTCCAACCCCAATTTTATTTCCAAAACATCAATTTCCACAATCG
Found at i:115374 original size:127 final size:125
Alignment explanation
Indices: 115086--115483 Score: 503
Period size: 128 Copynumber: 3.1 Consensus size: 125
115076 TTTCTAAGGT
** *
115086 GATACTCCAACCCCCATTTTATTTTCAAAACATCAATTTTTCATAATTGGGGATACTCTAACCTT
1 GATACTCCAACCCTAATTTTATTTTCAAAACATCAA-TTTTCACAATTGGGGATACTCTAACC-T
* * *
115151 GTTATTTTTGAGGGGATACTCCAACCCTGGTTTTATTTCAAAACACCAATTTTTCACCATCGGG
64 GTTATTTCT-AGGGGATACTCCAACCCCGATTTTATTTCAAAACA-CAATTTTTCACCATCGGG
*
115215 GATACTCCAA-CCTCGATTTTATTTTCAAAACATCAATTTTCACAATTGGGGATACTCTAATCCT
1 GATACTCCAACCCT-AATTTTATTTTCAAAACATCAATTTTCACAATTGGGGATACTCTAA-CCT
* *
115279 GTTATTTCTAAGGGATACTCCAACCCCGATTTTATTTCCAAAACACTAATTTTCCACCATC-GG
64 GTTATTTCTAGGGGATACTCCAACCCCGATTTTATTT-CAAAACAC-AATTTTTCACCATCGGG
* * * * * *
115342 GATACTCTAACCCTAATTTTATTTCCAAAACATCGATTTCCACAATCGGGGATACTCCAACTCTG
1 GATACTCCAACCCTAATTTTATTTTCAAAACATCAATTTTCACAATTGGGGATACTCTAAC-CTG
* * * *
115407 TTATTTCCGAGGGGATACTCCAACCTCGATTTTTTTTTCAAAACACAGATTTTTCACAATCGGG
65 TTATTT-CTAGGGGATACTCCAACCCCGA-TTTTATTTCAAAACACA-ATTTTTCACCATCGGG
115471 GATACTCCAACCC
1 GATACTCCAACCC
115484 CGTTATTTCA
Statistics
Matches: 237, Mismatches: 22, Indels: 20
0.85 0.08 0.07
Matches are distributed among these distances:
126 1 0.00
127 87 0.37
128 95 0.40
129 54 0.23
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.34
Consensus pattern (125 bp):
GATACTCCAACCCTAATTTTATTTTCAAAACATCAATTTTCACAATTGGGGATACTCTAACCTGT
TATTTCTAGGGGATACTCCAACCCCGATTTTATTTCAAAACACAATTTTTCACCATCGGG
Found at i:115439 original size:78 final size:79
Alignment explanation
Indices: 115340--115519 Score: 233
Period size: 79 Copynumber: 2.3 Consensus size: 79
115330 TTCCACCATC
*
115340 GGGATACTCTAACCCTAATTTTATTTCCAAAACATC-GA-TTTCCACAATCGGGGATACTCCAAC
1 GGGATACTCCAACCCTAATTTTATTTCCAAAACA-CAGATTTTCCACAATCGGGGATACTCCAAC
* * *
115403 TCTGTTATTTCCGAG
65 CCCGTTATTTCAGAG
* * * *
115418 GGGATACTCCAA-CCTCGATTTTTTTTTCAAAACACAGATTTTTCACAATCGGGGATACTCCAAC
1 GGGATACTCCAACCCT-AATTTTATTTCCAAAACACAGATTTTCCACAATCGGGGATACTCCAAC
115482 CCCGTTATTTCAGAG
65 CCCGTTATTTCAGAG
*
115497 GGGATACTCCAACCC-AGTTTTAT
1 GGGATACTCCAACCCTAATTTTAT
115520 CTAAAAAATA
Statistics
Matches: 87, Mismatches: 11, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
77 4 0.05
78 33 0.38
79 48 0.55
80 2 0.02
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.32
Consensus pattern (79 bp):
GGGATACTCCAACCCTAATTTTATTTCCAAAACACAGATTTTCCACAATCGGGGATACTCCAACC
CCGTTATTTCAGAG
Found at i:118300 original size:20 final size:19
Alignment explanation
Indices: 118275--118328 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
118265 TGCCAATCTT
*
118275 ATGTATCGATACAAT-TGTCC
1 ATGTATCGATACAATAAG--C
*
118295 ATGTATTGATACAATAAGC
1 ATGTATCGATACAATAAGC
118314 ATGTATCGATACAAT
1 ATGTATCGATACAAT
118329 GTATCGATAC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
19 15 0.50
20 14 0.47
21 1 0.03
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (19 bp):
ATGTATCGATACAATAAGC
Found at i:118332 original size:13 final size:13
Alignment explanation
Indices: 118314--118340 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
118304 TACAATAAGC
118314 ATGTATCGATACA
1 ATGTATCGATACA
118327 ATGTATCGATACA
1 ATGTATCGATACA
118340 A
1 A
118341 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:120834 original size:13 final size:13
Alignment explanation
Indices: 120816--120840 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
120806 TAGTACCCAA
120816 TGTATCGATACAT
1 TGTATCGATACAT
120829 TGTATCGATACA
1 TGTATCGATACA
120841 AGGAATATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:124830 original size:21 final size:21
Alignment explanation
Indices: 124806--124846 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
124796 CAATCTTTTA
124806 ATACGTATT-GTATCAATACAT
1 ATAC-TATTGGTATCAATACAT
*
124827 ATACTATTGGTATTAATACA
1 ATACTATTGGTATCAATACA
124847 CAAGGTTGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (21 bp):
ATACTATTGGTATCAATACAT
Found at i:124911 original size:20 final size:19
Alignment explanation
Indices: 124886--124956 Score: 70
Period size: 20 Copynumber: 3.6 Consensus size: 19
124876 ACCCTGAAAA
124886 GTATCGATACACATTTAAAT
1 GTATCGATACACA-TTAAAT
* **
124906 GTATCGATACAAATTGCAT
1 GTATCGATACACATTAAAT
**
124925 AGTATCGATACACACAAATAT
1 -GTATCGATACACATTAA-AT
124946 GTATCGATACA
1 GTATCGATACA
124957 GGACATTAGC
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
19 4 0.10
20 35 0.85
21 2 0.05
ACGTcount: A:0.41, C:0.17, G:0.13, T:0.30
Consensus pattern (19 bp):
GTATCGATACACATTAAAT
Found at i:125009 original size:53 final size:53
Alignment explanation
Indices: 124926--125062 Score: 222
Period size: 53 Copynumber: 2.6 Consensus size: 53
124916 AAATTGCATA
*
124926 GTATCGATACACACAAATATGTATCGATACAGGACATTAGCAGTAGTCAAATTT
1 GTATCGATACACAC-AATATGTATCGATACAGGACATTAGCAGTAGCCAAATTT
* *
124980 GTATCGATACACACAATATGTATCGATACAGGTCATTGGCAGTAGCCAAATTT
1 GTATCGATACACACAATATGTATCGATACAGGACATTAGCAGTAGCCAAATTT
125033 GTATCGATACACA-AATTATGTATCGATACA
1 GTATCGATACACACAA-TATGTATCGATACA
125063 TTGGAAGTAG
Statistics
Matches: 79, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
52 2 0.03
53 63 0.80
54 14 0.18
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (53 bp):
GTATCGATACACACAATATGTATCGATACAGGACATTAGCAGTAGCCAAATTT
Found at i:125049 original size:18 final size:19
Alignment explanation
Indices: 125026--125062 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
125016 TGGCAGTAGC
125026 CAAATT-TGTATCGATACA
1 CAAATTATGTATCGATACA
125044 CAAATTATGTATCGATACA
1 CAAATTATGTATCGATACA
125063 TTGGAAGTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.41, C:0.16, G:0.11, T:0.32
Consensus pattern (19 bp):
CAAATTATGTATCGATACA
Found at i:125105 original size:10 final size:10
Alignment explanation
Indices: 125086--125116 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
125076 AATCTCATTT
125086 TCACTGTTCA
1 TCACTGTTCA
*
125096 TCACTATTCA
1 TCACTGTTCA
125106 TCACTGTTCA
1 TCACTGTTCA
125116 T
1 T
125117 GTATCGATAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.23, C:0.29, G:0.06, T:0.42
Consensus pattern (10 bp):
TCACTGTTCA
Found at i:125138 original size:21 final size:22
Alignment explanation
Indices: 125104--125158 Score: 103
Period size: 21 Copynumber: 2.5 Consensus size: 22
125094 CATCACTATT
125104 CATCACTGTTCATGTATCGATA
1 CATCACTGTTCATGTATCGATA
125126 CATCACT-TTCATGTATCGATA
1 CATCACTGTTCATGTATCGATA
125147 CATCACTGTTCA
1 CATCACTGTTCA
125159 CACTGTTCAC
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 21 0.66
22 11 0.34
ACGTcount: A:0.27, C:0.25, G:0.11, T:0.36
Consensus pattern (22 bp):
CATCACTGTTCATGTATCGATA
Found at i:125253 original size:13 final size:13
Alignment explanation
Indices: 125235--125260 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
125225 ACATATTTGT
125235 GTGTATCGATACA
1 GTGTATCGATACA
125248 GTGTATCGATACA
1 GTGTATCGATACA
125261 TCATAAATAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (13 bp):
GTGTATCGATACA
Found at i:125802 original size:34 final size:35
Alignment explanation
Indices: 125739--125805 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
125729 CTAAGTGATT
125739 GAGAGGTTCTATCTTAGCCTTTGAAAAAGATAGAGA
1 GAGAGGTTCTATCTTAGCCTTTG-AAAAGATAGAGA
125775 GAGAGGTTTCTATCTTAGCC-TTG-AAAGATAG
1 GAGAGG-TTCTATCTTAGCCTTTGAAAAGATAG
125806 TGTTGTAAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 8 0.27
36 9 0.30
37 13 0.43
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (35 bp):
GAGAGGTTCTATCTTAGCCTTTGAAAAGATAGAGA
Found at i:127482 original size:13 final size:13
Alignment explanation
Indices: 127464--127489 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
127454 CATTTTATGG
127464 TGTATCGATACAT
1 TGTATCGATACAT
127477 TGTATCGATACAT
1 TGTATCGATACAT
127490 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:127486 original size:33 final size:32
Alignment explanation
Indices: 127444--127507 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 32
127434 TACAAGCCAA
*
127444 TGTATCGATACAT-TTTATGGTGTATCGATACAT
1 TGTATCGATACATACTT-T-GTGTATCGATACAT
127477 TGTATCGATACATACTTTGTGTATCGATACA
1 TGTATCGATACATACTTTGTGTATCGATACA
127508 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 13 0.45
33 14 0.48
34 2 0.07
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (32 bp):
TGTATCGATACATACTTTGTGTATCGATACAT
Found at i:127604 original size:20 final size:20
Alignment explanation
Indices: 127562--127611 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
127552 TCTTTTTCAA
*
127562 GTATCGATACAATGCAACAT
1 GTATCGATACAATGAAACAT
* **
127582 GTATCGATACAATTAAATGT
1 GTATCGATACAATGAAACAT
127602 GTATCGATAC
1 GTATCGATAC
127612 TTTTCAGGGT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (20 bp):
GTATCGATACAATGAAACAT
Found at i:129411 original size:13 final size:13
Alignment explanation
Indices: 129393--129420 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
129383 CCGTTACAAC
129393 CAATGTATCGATA
1 CAATGTATCGATA
129406 CAATGTATCGATA
1 CAATGTATCGATA
129419 CA
1 CA
129421 TTGTCAAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:134371 original size:20 final size:19
Alignment explanation
Indices: 134348--134419 Score: 90
Period size: 20 Copynumber: 3.6 Consensus size: 19
134338 AAAAAAACAG
134348 AATGTATCGATACATTAAA
1 AATGTATCGATACATTAAA
* *
134367 GAATGTATCGATACACTCATA
1 -AATGTATCGATACA-TTAAA
*
134388 CATGTATCGATACATTGAAA
1 AATGTATCGATACATT-AAA
134408 AATGTATCGATA
1 AATGTATCGATA
134420 TATCTGGGTA
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
19 1 0.02
20 40 0.91
21 3 0.07
ACGTcount: A:0.42, C:0.14, G:0.14, T:0.31
Consensus pattern (19 bp):
AATGTATCGATACATTAAA
Found at i:134451 original size:71 final size:71
Alignment explanation
Indices: 134366--134575 Score: 366
Period size: 71 Copynumber: 3.0 Consensus size: 71
134356 GATACATTAA
* *
134366 AGAATGTATCGATACACTCATACATGTATCGATACATTGAAAAATGTATCGATATATCTGGGTAA
1 AGAATGTATCGATACATTCATACATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAA
*
134431 AAAGAT
66 AAAGAC
*
134437 AGAATGTATCGATACATTCATGCATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAA
1 AGAATGTATCGATACATTCATACATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAA
134502 AAAGAC
66 AAAGAC
* *
134508 AGAATGTATCGATACATTCATACATGTATCGATACATTGAAAACTATATCGATACATCTGGGTAA
1 AGAATGTATCGATACATTCATACATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAA
134573 AAA
66 AAA
134576 TGTGACTTTT
Statistics
Matches: 132, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
71 132 1.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (71 bp):
AGAATGTATCGATACATTCATACATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAA
AAAGAC
Found at i:134465 original size:20 final size:20
Alignment explanation
Indices: 134439--134493 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
134429 AAAAAGATAG
**
134439 AATGTATCGATACATTCATG
1 AATGTATCGATACATTCAAA
* *
134459 CATGTATCGATACATTGAAA
1 AATGTATCGATACATTCAAA
134479 AATGTATCGATACAT
1 AATGTATCGATACAT
134494 CTGGGTAAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.33
Consensus pattern (20 bp):
AATGTATCGATACATTCAAA
Found at i:134484 original size:91 final size:90
Alignment explanation
Indices: 134299--134493 Score: 255
Period size: 91 Copynumber: 2.2 Consensus size: 90
134289 TTTTAACTAG
****
134299 ATGTATCGATACATTTCTCAATGTATCGATACATCTGGGAAAAAAACAGAATGTATCGATACATT
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGAAAAAAACAGAATGTATCGATACATT
* *
134364 AAAGAATGTATCGATACACTCATAC
66 AAAGAATGTATCGATACACTCAAAA
* * *
134389 ATGTATCGATACATTGAAAAATGTATCGATATATCTGGGTAAAAAGATAGAATGTATCGATACAT
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGG-AAAAAAACAGAATGTATCGATACAT
* * * * *
134454 TCATGCATGTATCGATACATTGAAAA
65 TAAAGAATGTATCGATACACTCAAAA
134480 ATGTATCGATACAT
1 ATGTATCGATACAT
134494 CTGGGTAAAA
Statistics
Matches: 90, Mismatches: 14, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
90 34 0.38
91 56 0.62
ACGTcount: A:0.40, C:0.14, G:0.16, T:0.30
Consensus pattern (90 bp):
ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGAAAAAAACAGAATGTATCGATACATT
AAAGAATGTATCGATACACTCAAAA
Found at i:135338 original size:48 final size:48
Alignment explanation
Indices: 135276--135442 Score: 158
Period size: 48 Copynumber: 3.5 Consensus size: 48
135266 AGAGGAGTGC
* * * *
135276 CAATGTACCAATTCAAGGCCAACGACATCGAGCTAAGGGAAAAGTAGA
1 CAATGTGCTAATTCAAGGCCAGCGACATCGAGCGAAGGGAAAAGTAGA
* * * * * *
135324 CAATGTGTTGATTCAAAGCCAGTGACATTGAGCGAAGGGAAAAGTGGA
1 CAATGTGCTAATTCAAGGCCAGCGACATCGAGCGAAGGGAAAAGTAGA
** ** * * *
135372 CAATGTGCTAATTCAAGGCCAGCGACATTAAGTTAA--TAAAGGTGGA
1 CAATGTGCTAATTCAAGGCCAGCGACATCGAGCGAAGGGAAAAGTAGA
*
135418 CAATGTGCTAATTCAAGGCTAGCGA
1 CAATGTGCTAATTCAAGGCCAGCGA
135443 TATTGAGCTA
Statistics
Matches: 99, Mismatches: 20, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
46 32 0.32
48 67 0.68
ACGTcount: A:0.37, C:0.17, G:0.26, T:0.20
Consensus pattern (48 bp):
CAATGTGCTAATTCAAGGCCAGCGACATCGAGCGAAGGGAAAAGTAGA
Found at i:135429 original size:46 final size:46
Alignment explanation
Indices: 135276--135484 Score: 150
Period size: 48 Copynumber: 4.5 Consensus size: 46
135266 AGAGGAGTGC
* * * ** * * *
135276 CAATGTACCAATTCAAGGCCAACGACATCGAGCTAAGGGAAAAGTAGA
1 CAATGTGCTAATTCAAGGCCAGCGACATTAAGCTAA--TAAAGGTGGA
* * * * * * * *
135324 CAATGTGTTGATTCAAAGCCAGTGACATTGAGCGAAGGGAAAAGTGGA
1 CAATGTGCTAATTCAAGGCCAGCGACATTAAGCTAA--TAAAGGTGGA
*
135372 CAATGTGCTAATTCAAGGCCAGCGACATTAAGTTAATAAAGGTGGA
1 CAATGTGCTAATTCAAGGCCAGCGACATTAAGCTAATAAAGGTGGA
* * * * *
135418 CAATGTGCTAATTCAAGGCTAGCGATATTGAGCTAATAAAGCT-GC
1 CAATGTGCTAATTCAAGGCCAGCGACATTAAGCTAATAAAGGTGGA
* * *
135463 CAATATGCTGATTCAATGCCAG
1 CAATGTGCTAATTCAAGGCCAG
135485 TGATATTGGA
Statistics
Matches: 132, Mismatches: 29, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
45 19 0.14
46 46 0.35
48 67 0.51
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.22
Consensus pattern (46 bp):
CAATGTGCTAATTCAAGGCCAGCGACATTAAGCTAATAAAGGTGGA
Found at i:135490 original size:45 final size:46
Alignment explanation
Indices: 135364--135492 Score: 154
Period size: 46 Copynumber: 2.8 Consensus size: 46
135354 AGCGAAGGGA
* * *
135364 AAAG-TGGACAATGTGCTAATTCAAGGCCAGCGACATTAAGTTAAT
1 AAAGCTGGACAATGTGCTAATTCAAGGCCAGCGATATTGAGCTAAT
* *
135409 AAAGGTGGACAATGTGCTAATTCAAGGCTAGCGATATTGAGCTAAT
1 AAAGCTGGACAATGTGCTAATTCAAGGCCAGCGATATTGAGCTAAT
* * * * *
135455 AAAGCT-GCCAATATGCTGATTCAATGCCAGTGATATTG
1 AAAGCTGGACAATGTGCTAATTCAAGGCCAGCGATATTG
135493 GACTTTATGA
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
45 30 0.42
46 42 0.58
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.26
Consensus pattern (46 bp):
AAAGCTGGACAATGTGCTAATTCAAGGCCAGCGATATTGAGCTAAT
Found at i:135602 original size:25 final size:25
Alignment explanation
Indices: 135565--135613 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
135555 AAAAAAAGGT
*
135565 GCCACTAACTTATGTGGGCTTTGAA
1 GCCACCAACTTATGTGGGCTTTGAA
*
135590 GCCACCAATTTATGTGGGCTTTGA
1 GCCACCAACTTATGTGGGCTTTGA
135614 CAGGGGATTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.22, C:0.20, G:0.24, T:0.33
Consensus pattern (25 bp):
GCCACCAACTTATGTGGGCTTTGAA
Found at i:135657 original size:28 final size:28
Alignment explanation
Indices: 135602--136133 Score: 503
Period size: 28 Copynumber: 18.5 Consensus size: 28
135592 CACCAATTTA
* *
135602 TGTGGGCTTTGACAGGGGATTCCACTGACT
1 TGTGGGCTTTGA-AAGGG-TGCCACTGACT
* * *
135632 TGTGAGCTTTGAAGGGGTACCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
135660 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
135688 TGTGGGCTTTGAAAGAGTGCCACTGATTT
1 TGTGGGCTTTGAAAGGGTGCCACTGA-CT
135717 GTGTGGGCTTTGAAAGGGTATGCCACTGACT
1 -TGTGGGCTTTGAAAGGG--TGCCACTGACT
* * *
135748 TATGAGCTTTAAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
135776 TGTGGGCTTTGAAAGGATGCTACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
**
135804 TGTGGTTTTTTG--AGGAGATGCCACTGACT
1 TGTGG-GCTTTGAAAGG-G-TGCCACTGACT
* * *
135833 TATGGGCTTTGAAAAGAGTTACCA-TCGACTT
1 TGTGGGCTTTG-AAAG-GGTGCCACT-GAC-T
* * *
135864 ATGTAGGCTTTGAAAAGGTGCCACCGACT
1 -TGTGGGCTTTGAAAGGGTGCCACTGACT
*
135893 TGTGGGCTTTGAAAGGGCATGCCACTAACT
1 TGTGGGCTTTGAAAGGG--TGCCACTGACT
*
135923 TGTGGGCTTTGAAAGGGTATGCCACTAACT
1 TGTGGGCTTTGAAAGGG--TGCCACTGACT
* *
135953 TGTGGGCTTTGAAAGGGTACCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * * *
135981 TGAGGGCTTTAAAAGGATGCCATTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
136009 TGTGGGATTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
136037 TATGGCCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
136065 TGTAGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
136093 TGTGGGCTTTGAAAGGATGCCACTGACC
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
*
136121 TATGGGCTTTGAA
1 TGTGGGCTTTGAA
136134 GAGATGAACT
Statistics
Matches: 424, Mismatches: 61, Indels: 36
0.81 0.12 0.07
Matches are distributed among these distances:
27 3 0.01
28 259 0.61
29 25 0.06
30 111 0.26
31 7 0.02
32 19 0.04
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30
Consensus pattern (28 bp):
TGTGGGCTTTGAAAGGGTGCCACTGACT
Found at i:135900 original size:205 final size:199
Alignment explanation
Indices: 135638--136133 Score: 615
Period size: 205 Copynumber: 2.5 Consensus size: 199
135628 GACTTGTGAG
* * * *
135638 CTTTGAAGGGGTACCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAA-
1 CTTTGAAAGGATACCACTGACTTGTAGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTGAAAG
** * *
135702 GAGTGCCACTGATTTGTGTGGGCTTTGAAAGGGTATGCCACTGACTTATGAGCTTTAAAAGGGTG
66 GA-TGCCACTGAACT-TGTGGGCTTTGAAAGGGTATGCCACTAACTTATGAGCTTTAAAAGGGTA
* * * * ** * *
135767 CCACTGACTTGTGGGCTTTGAAAGGATGCTACTAACTTGTGGTTTTTTG-AGGAGATGCCACTGA
129 CCACTAACTTGAGGGCTTTAAAAGGATGCCACTAACTTGTGG-GATTTGAAAG-GATGCCACTAA
*
135831 CTTATGGG
192 CTTATGGC
* *
135839 CTTTGAAAAGAGTTACCA-TCGACTTATGTAGGCTTTGAAAAGGTGCCACCGACTTGTGGGCTTT
1 CTTTG-AAAG-GATACCACT-GAC-T-TGTAGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTT
* * *
135903 GAAAGGGCATGCCACT-AACTTGTGGGCTTTGAAAGGGTATGCCACTAACTTGTGGGCTTTGAAA
61 GAAA-GG-ATGCCACTGAACTTGTGGGCTTTGAAAGGGTATGCCACTAACTTATGAGCTTTAAAA
*
135967 GGGTACCACTAACTTGAGGGCTTTAAAAGGATGCCATTAACTTGTGGGATTTGAAAGGATGCCAC
124 GGGTACCACTAACTTGAGGGCTTTAAAAGGATGCCACTAACTTGTGGGATTTGAAAGGATGCCAC
136032 TAACTTATGGC
189 TAACTTATGGC
* *
136043 CTTTGAAAGGATGCCACTGACTTGTAGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAG
1 CTTTGAAAGGATACCACTGACTTGTAGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTGAAAG
* *
136108 GATGCCACTG-ACCTATGGGCTTTGAA
66 GATGCCACTGAACTTGTGGGCTTTGAA
136134 GAGATGAACT
Statistics
Matches: 256, Mismatches: 28, Indels: 25
0.83 0.09 0.08
Matches are distributed among these distances:
198 22 0.09
199 2 0.01
200 40 0.16
201 6 0.02
202 12 0.05
203 14 0.05
204 27 0.11
205 122 0.48
206 2 0.01
207 8 0.03
208 1 0.00
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30
Consensus pattern (199 bp):
CTTTGAAAGGATACCACTGACTTGTAGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTGAAAG
GATGCCACTGAACTTGTGGGCTTTGAAAGGGTATGCCACTAACTTATGAGCTTTAAAAGGGTACC
ACTAACTTGAGGGCTTTAAAAGGATGCCACTAACTTGTGGGATTTGAAAGGATGCCACTAACTTA
TGGC
Found at i:137346 original size:21 final size:21
Alignment explanation
Indices: 137320--137364 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
137310 CTCTTTTTTG
137320 TTTGTTTGTTTTTTGATTGTT
1 TTTGTTTGTTTTTTGATTGTT
**
137341 TTTGTTTGTTTTTTTTTTGTT
1 TTTGTTTGTTTTTTGATTGTT
137362 TTT
1 TTT
137365 TAATTTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.02, C:0.00, G:0.16, T:0.82
Consensus pattern (21 bp):
TTTGTTTGTTTTTTGATTGTT
Done.