Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2713
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 368274
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
File 2 of 3
Found at i:137357 original size:40 final size:40
Alignment explanation
Indices: 137313--137395 Score: 107
Period size: 40 Copynumber: 2.1 Consensus size: 40
137303 TCTGGACCTC
*
137313 TTTTTTGTTTGTTT-GTTTTTTGATT-GTTTTTGTTTGTTTT
1 TTTTTTGTTT-TTTAATTTTTTGATTGGTTTTT-TTTGTTTT
**
137353 TTTTTTGTTTTTTAATTTTTTTCTTGGTTTTTTTTGTTTT
1 TTTTTTGTTTTTTAATTTTTTGATTGGTTTTTTTTGTTTT
137393 TTT
1 TTT
137396 GGTTTTTTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
39 3 0.08
40 29 0.76
41 6 0.16
ACGTcount: A:0.04, C:0.01, G:0.13, T:0.82
Consensus pattern (40 bp):
TTTTTTGTTTTTTAATTTTTTGATTGGTTTTTTTTGTTTT
Found at i:137363 original size:10 final size:10
Alignment explanation
Indices: 137324--137405 Score: 69
Period size: 10 Copynumber: 8.2 Consensus size: 10
137314 TTTTTGTTTG
137324 TTTGTTTTTT
1 TTTGTTTTTT
* *
137334 GATTGTTTTTG
1 -TTTGTTTTTT
137345 TTTGTTTTTTT
1 TTTG-TTTTTT
137356 TTTGTTTTTT
1 TTTGTTTTTT
**
137366 AAT-TTTTTT
1 TTTGTTTTTT
* *
137375 CTTGGTTTTT
1 TTTGTTTTTT
137385 TTTG-TTTTT
1 TTTGTTTTTT
*
137394 TTGGTTTTTT
1 TTTGTTTTTT
137404 TT
1 TT
137406 GGGTACGAAG
Statistics
Matches: 57, Mismatches: 11, Indels: 7
0.76 0.15 0.09
Matches are distributed among these distances:
9 15 0.26
10 25 0.44
11 17 0.30
ACGTcount: A:0.04, C:0.01, G:0.13, T:0.82
Consensus pattern (10 bp):
TTTGTTTTTT
Found at i:137403 original size:11 final size:10
Alignment explanation
Indices: 137313--137405 Score: 71
Period size: 11 Copynumber: 8.8 Consensus size: 10
137303 TCTGGACCTC
137313 TTTTTTGTTTG
1 TTTTTT-TTTG
137324 TTTGTTTTTTG
1 TTT-TTTTTTG
* *
137335 ATTGTTTTTG
1 TTTTTTTTTG
*
137345 TTTGTTTTTTT
1 TTT-TTTTTTG
*
137356 TTTGTTTTTTAA
1 TTT-TTTTTT-G
137368 TTTTTTTCTTG
1 TTTTTTT-TTG
*
137379 GTTTTTTTTG
1 TTTTTTTTTG
*
137389 -TTTTTTTGG
1 TTTTTTTTTG
137398 TTTTTTTT
1 TTTTTTTT
137406 GGGTACGAAG
Statistics
Matches: 68, Mismatches: 9, Indels: 11
0.77 0.10 0.12
Matches are distributed among these distances:
9 8 0.12
10 18 0.26
11 34 0.50
12 8 0.12
ACGTcount: A:0.03, C:0.01, G:0.14, T:0.82
Consensus pattern (10 bp):
TTTTTTTTTG
Found at i:137404 original size:18 final size:18
Alignment explanation
Indices: 137351--137406 Score: 69
Period size: 18 Copynumber: 3.0 Consensus size: 18
137341 TTTGTTTGTT
*
137351 TTTTTTTTGTTTTTTAATT-
1 TTTTTTTGGTTTTTT--TTG
137370 TTTTTCTTGGTTTTTTTTG
1 TTTTT-TTGGTTTTTTTTG
137389 TTTTTTTGGTTTTTTTTG
1 TTTTTTTGGTTTTTTTTG
137407 GGTACGAAGG
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
18 15 0.44
19 10 0.29
20 9 0.26
ACGTcount: A:0.04, C:0.02, G:0.12, T:0.82
Consensus pattern (18 bp):
TTTTTTTGGTTTTTTTTG
Found at i:137405 original size:21 final size:19
Alignment explanation
Indices: 137313--137405 Score: 78
Period size: 19 Copynumber: 4.8 Consensus size: 19
137303 TCTGGACCTC
* *
137313 TTTTTTGTTTGTTTGTTTT
1 TTTTTTGTTTTTTTTTTTT
**
137332 TTGATTGTTTTTGTTTGTTTT
1 TTTTTTGTTTTT-TTT-TTTT
**
137353 TTTTTTGTTTTTTAATTTT
1 TTTTTTGTTTTTTTTTTTT
* * *
137372 TTTCTTGGTTTTTTTTGTT
1 TTTTTTGTTTTTTTTTTTT
*
137391 TTTTTGGTTTTTTTT
1 TTTTTTGTTTTTTTT
137406 GGGTACGAAG
Statistics
Matches: 56, Mismatches: 16, Indels: 4
0.74 0.21 0.05
Matches are distributed among these distances:
19 39 0.70
20 3 0.05
21 14 0.25
ACGTcount: A:0.03, C:0.01, G:0.14, T:0.82
Consensus pattern (19 bp):
TTTTTTGTTTTTTTTTTTT
Found at i:147587 original size:70 final size:70
Alignment explanation
Indices: 147497--147649 Score: 288
Period size: 70 Copynumber: 2.2 Consensus size: 70
147487 TTTGTCCAAA
147497 TGTATCGATACATTGTTTGAATGTATCGATACAAGGTCCCAACGATCAAAAATTTTGAATTTCAA
1 TGTATCGATACATTGTTTGAATGTATCGATACAAGGTCCCAACGATCAAAAATTTTGAATTTCAA
147562 CGATT
66 CGATT
*
147567 TGTATCGATACATTGTTTGAATGTATCGATACAAGGTCCCAACGGTCAAAAATTTTGAATTTCAA
1 TGTATCGATACATTGTTTGAATGTATCGATACAAGGTCCCAACGATCAAAAATTTTGAATTTCAA
*
147632 TGATT
66 CGATT
147637 TGTATCGATACAT
1 TGTATCGATACAT
147650 AAGTGTTGTA
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
70 81 1.00
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.35
Consensus pattern (70 bp):
TGTATCGATACATTGTTTGAATGTATCGATACAAGGTCCCAACGATCAAAAATTTTGAATTTCAA
CGATT
Found at i:147660 original size:19 final size:18
Alignment explanation
Indices: 147635--147699 Score: 77
Period size: 19 Copynumber: 3.8 Consensus size: 18
147625 ATTTCAATGA
147635 TTTGTATCGATACATAAG
1 TTTGTATCGATACATAAG
147653 TGTTGTATCGATAC--AA-
1 T-TTGTATCGATACATAAG
147669 --TGTATCGATACATAAG
1 TTTGTATCGATACATAAG
147685 TTTTGTATCGATACA
1 -TTTGTATCGATACA
147700 ATGTAAGCTA
Statistics
Matches: 40, Mismatches: 0, Indels: 13
0.75 0.00 0.25
Matches are distributed among these distances:
13 11 0.28
15 2 0.05
17 2 0.05
18 1 0.03
19 24 0.60
ACGTcount: A:0.32, C:0.12, G:0.17, T:0.38
Consensus pattern (18 bp):
TTTGTATCGATACATAAG
Found at i:147674 original size:13 final size:13
Alignment explanation
Indices: 147656--147680 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
147646 ACATAAGTGT
147656 TGTATCGATACAA
1 TGTATCGATACAA
147669 TGTATCGATACA
1 TGTATCGATACA
147681 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:147678 original size:32 final size:32
Alignment explanation
Indices: 147637--147704 Score: 127
Period size: 32 Copynumber: 2.1 Consensus size: 32
147627 TTCAATGATT
147637 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
*
147669 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
147701 TGTA
1 TGTA
147705 AGCTACTGCC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:147760 original size:13 final size:13
Alignment explanation
Indices: 147742--147766 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
147732 ATTACTCAAA
147742 TGTATCGATACAT
1 TGTATCGATACAT
147755 TGTATCGATACA
1 TGTATCGATACA
147767 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:147818 original size:52 final size:52
Alignment explanation
Indices: 147775--147896 Score: 190
Period size: 52 Copynumber: 2.3 Consensus size: 52
147765 CACTGATCTT
* *
147775 TGTATCGATACATGCAGGTAAATTTACCCAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGGAAATTTACCCAAATGTATCGATACACTATAAAA
* * * *
147827 TGTATCGATACATACAGGGAAATTTGCCCAAATGTATCAATACACTATGAAA
1 TGTATCGATACATGCAGGGAAATTTACCCAAATGTATCGATACACTATAAAA
147879 TGTATCGATACATGCAGG
1 TGTATCGATACATGCAGG
147897 CAAAATTTCA
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
52 63 1.00
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (52 bp):
TGTATCGATACATGCAGGGAAATTTACCCAAATGTATCGATACACTATAAAA
Found at i:155028 original size:20 final size:20
Alignment explanation
Indices: 155003--155218 Score: 117
Period size: 20 Copynumber: 9.7 Consensus size: 20
154993 TTTTAACTAG
155003 ATGTATCGATACATTGAAAA
1 ATGTATCGATACATTGAAAA
155023 ATGTATCGATACATCTCGAAAAAAAGACAGA
1 ATGTATCGATACAT-T-G------A-A-A-A
*
155054 ATGTATCGATACATTGAAGA
1 ATGTATCGATACATTGAAAA
* * * *
155074 ATGTATCGATACACTCATAC
1 ATGTATCGATACATTGAAAA
* * * *
155094 ATGTATCGATACACTCATAC
1 ATGTATCGATACATTGAAAA
155114 ATGTATCGATACATTGAAAA
1 ATGTATCGATACATTGAAAA
155134 ATGTATCGATACATCTAGGTAAAAAGACAGA
1 ATGTATCGATACAT-T--G-----A-A-A-A
* * *
155165 ATGTATCGATACATTCATAC
1 ATGTATCGATACATTGAAAA
*
155185 ATGTATCAATACATTGAAAA
1 ATGTATCGATACATTGAAAA
155205 ATGTATCGATACAT
1 ATGTATCGATACAT
155219 CTAGGTAAAA
Statistics
Matches: 156, Mismatches: 18, Indels: 44
0.72 0.08 0.20
Matches are distributed among these distances:
20 109 0.70
21 3 0.02
22 2 0.01
23 3 0.02
28 2 0.01
29 3 0.02
30 4 0.03
31 30 0.19
ACGTcount: A:0.42, C:0.15, G:0.14, T:0.28
Consensus pattern (20 bp):
ATGTATCGATACATTGAAAA
Found at i:155169 original size:31 final size:30
Alignment explanation
Indices: 155133--155249 Score: 108
Period size: 31 Copynumber: 3.5 Consensus size: 30
155123 TACATTGAAA
155133 AATGTATCGATACATCTAGGTAAAAAGACAG
1 AATGTATCGATACATCTAGGTAAAAAGA-AG
* *
155164 AATGTATCGATACATTCATACATGTATCAATACATTGAAA
1 AATGTATCGATACA-TC-T--AGGTA--AA-A-A--GAAG
155204 AATGTATCGATACATCTAGGTAAAAAGATAG
1 AATGTATCGATACATCTAGGTAAAAAGA-AG
155235 AATGTATCGATACAT
1 AATGTATCGATACAT
155250 TCATACATCT
Statistics
Matches: 71, Mismatches: 4, Indels: 22
0.73 0.04 0.23
Matches are distributed among these distances:
30 2 0.03
31 30 0.42
32 3 0.04
33 2 0.03
34 2 0.03
35 4 0.06
36 4 0.06
37 2 0.03
38 2 0.03
39 3 0.04
40 15 0.21
41 2 0.03
ACGTcount: A:0.44, C:0.13, G:0.15, T:0.28
Consensus pattern (30 bp):
AATGTATCGATACATCTAGGTAAAAAGAAG
Found at i:155175 original size:71 final size:71
Alignment explanation
Indices: 155094--155257 Score: 301
Period size: 71 Copynumber: 2.3 Consensus size: 71
155084 ACACTCATAC
* *
155094 ATGTATCGATACACTCATACATGTATCGATACATTGAAAAATGTATCGATACATCTAGGTAAAAA
1 ATGTATCGATACATTCATACATGTATCAATACATTGAAAAATGTATCGATACATCTAGGTAAAAA
155159 GACAGA
66 GACAGA
155165 ATGTATCGATACATTCATACATGTATCAATACATTGAAAAATGTATCGATACATCTAGGTAAAAA
1 ATGTATCGATACATTCATACATGTATCAATACATTGAAAAATGTATCGATACATCTAGGTAAAAA
*
155230 GATAGA
66 GACAGA
155236 ATGTATCGATACATTCATACAT
1 ATGTATCGATACATTCATACAT
155258 CTGGGTAAAA
Statistics
Matches: 90, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 90 1.00
ACGTcount: A:0.42, C:0.15, G:0.14, T:0.29
Consensus pattern (71 bp):
ATGTATCGATACATTCATACATGTATCAATACATTGAAAAATGTATCGATACATCTAGGTAAAAA
GACAGA
Found at i:155197 original size:111 final size:111
Alignment explanation
Indices: 155003--155217 Score: 324
Period size: 111 Copynumber: 1.9 Consensus size: 111
154993 TTTTAACTAG
*
155003 ATGTATCGATACATTGAAAAATGTATCGATACATCTCGAAAAAAAGACAGAATGTATCGATACAT
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTAGAAAAAAAGACAGAATGTATCGATACAT
* * * *
155068 TGAAGAATGTATCGATACACTCATACATGTATCGATACACTCATAC
66 TCAAGAATGTATCAATACACTCAAAAATGTATCGATACACTCATAC
**
155114 ATGTATCGATACATTGAAAAATGTATCGATACATCTAGGTAAAAAGACAGAATGTATCGATACAT
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTAGAAAAAAAGACAGAATGTATCGATACAT
* * *
155179 TCATA-CATGTATCAATACATTGAAAAATGTATCGATACA
66 TCA-AGAATGTATCAATACACTCAAAAATGTATCGATACA
155218 TCTAGGTAAA
Statistics
Matches: 93, Mismatches: 10, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
111 92 0.99
112 1 0.01
ACGTcount: A:0.42, C:0.15, G:0.14, T:0.28
Consensus pattern (111 bp):
ATGTATCGATACATTGAAAAATGTATCGATACATCTAGAAAAAAAGACAGAATGTATCGATACAT
TCAAGAATGTATCAATACACTCAAAAATGTATCGATACACTCATAC
Found at i:160454 original size:155 final size:156
Alignment explanation
Indices: 160224--160524 Score: 417
Period size: 155 Copynumber: 1.9 Consensus size: 156
160214 CCCTAAGGGT
*
160224 ATTTTAGTAATTTCCTCTAAAACCAAGTCCAATGTAGTCACCGAGATGCTTTTATGCAAAAAATG
1 ATTTTAGTAATTTCCTCTAAAACCAAGTCCAATGAAGTCACCGAGATGCTTTTATGCAAAAAATG
* * * *
160289 TGCATTTAGGATAGGTTCACCCTTCTTTAACTATTTTTGAGTCCCTTAGGGTTACCGAGATACTG
66 TGCATCTAGGATAGGTTCACCCTTCTATAACTATTTTTAAGTCCCTTAGGGTTACCAAGATACT-
160354 TT-ATGTCAAAGGTATACCTTAACGGC
130 TTCATGTCAAAGGTATACCTTAACGGC
* ** * * * * *
160380 ATTTTGGTAATTTCCTCTAAAATTAAGTTCGATGAAGTCATCGAGATGCTTTTATGC-TAAAGTG
1 ATTTTAGTAATTTCCTCTAAAACCAAGTCCAATGAAGTCACCGAGATGCTTTTATGCAAAAAATG
* * * *
160444 TGCATCTAGGATAGGTTCATCCTTCTATGATTATTTTTAAGTCCTTTAGGGTTACCAAGATACTT
66 TGCATCTAGGATAGGTTCACCCTTCTATAACTATTTTTAAGTCCCTTAGGGTTACCAAGATACTT
*
160509 TCATGTCGAAGGTATA
131 TCATGTCAAAGGTATA
160525 TTCCAAAATT
Statistics
Matches: 126, Mismatches: 18, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
154 2 0.02
155 74 0.59
156 50 0.40
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (156 bp):
ATTTTAGTAATTTCCTCTAAAACCAAGTCCAATGAAGTCACCGAGATGCTTTTATGCAAAAAATG
TGCATCTAGGATAGGTTCACCCTTCTATAACTATTTTTAAGTCCCTTAGGGTTACCAAGATACTT
TCATGTCAAAGGTATACCTTAACGGC
Found at i:160539 original size:155 final size:155
Alignment explanation
Indices: 160222--160563 Score: 397
Period size: 155 Copynumber: 2.2 Consensus size: 155
160212 GTCCCTAAGG
*
160222 GTATTTTAGTAATTTCCTCTAAAACCAAGTCCAATGTAGTCACCGAGATGCTTTTATGCAAAAAA
1 GTATTTTAGTAATTTCCTCTAAAACCAAGTCCAATGAAGTCACCGAGATGCTTTTATGCAAAAAA
* * * *
160287 TGTGCATTTAGGATAGGTTCACCCTTCTTTAACTATTTTTGAGTCCCTTAGGGTTACCGAGATAC
66 TGTGCATCTAGGATAGGTTCACCCTTCTATAACTATTTTTAAGTCCCTTAGGGTTACCAAGATAC
**
160352 TGTTATGTCAAAGGTATACCTTAACG
131 TGTTATGTCAAAGGTATACC-TAAAA
* * ** * * * * *
160378 GCATTTTGGTAATTTCCTCTAAAATTAAGTTCGATGAAGTCATCGAGATGCTTTTATGC-TAAAG
1 GTATTTTAGTAATTTCCTCTAAAACCAAGTCCAATGAAGTCACCGAGATGCTTTTATGCAAAAAA
* * * *
160442 TGTGCATCTAGGATAGGTTCATCCTTCTATGATTATTTTTAAGTCCTTTAGGGTTACCAAGATAC
66 TGTGCATCTAGGATAGGTTCACCCTTCTATAACTATTTTTAAGTCCCTTAGGGTTACCAAGATAC
*
160507 T-TTCATGTCGAAGGTATATTCC-AAAA
131 TGTT-ATGTCAAAGGTATA--CCTAAAA
* *
160533 TTATTTTAGTAATTT--TACTAGAACCAAGTCC
1 GTATTTTAGTAATTTCCT-CTAAAACCAAGTCC
160564 GACATAGTCA
Statistics
Matches: 154, Mismatches: 28, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
153 1 0.01
154 12 0.08
155 88 0.57
156 51 0.33
157 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37
Consensus pattern (155 bp):
GTATTTTAGTAATTTCCTCTAAAACCAAGTCCAATGAAGTCACCGAGATGCTTTTATGCAAAAAA
TGTGCATCTAGGATAGGTTCACCCTTCTATAACTATTTTTAAGTCCCTTAGGGTTACCAAGATAC
TGTTATGTCAAAGGTATACCTAAAA
Found at i:161927 original size:13 final size:13
Alignment explanation
Indices: 161909--161934 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
161899 TACACCAAGT
161909 ATGTATCGATACA
1 ATGTATCGATACA
161922 ATGTATCGATACA
1 ATGTATCGATACA
161935 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:161932 original size:32 final size:33
Alignment explanation
Indices: 161891--161954 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
161881 TAGCCAAACT
* **
161891 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
161923 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
161955 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:164191 original size:21 final size:21
Alignment explanation
Indices: 164158--164202 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
164148 TTGCAAGTTG
*
164158 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
164180 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
164200 AAA
1 AAA
164203 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:166017 original size:15 final size:15
Alignment explanation
Indices: 165997--166027 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
165987 TAAAAATGTC
*
165997 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
166012 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
166027 C
1 C
166028 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:168113 original size:13 final size:13
Alignment explanation
Indices: 168095--168133 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
168085 ACATTTTTCT
168095 TTGTATCGATACA
1 TTGTATCGATACA
168108 TTGTATCGATACA
1 TTGTATCGATACA
*
168121 CTGTATCGATACA
1 TTGTATCGATACA
168134 GGAGGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:168296 original size:20 final size:19
Alignment explanation
Indices: 168255--168297 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
168245 ATCTTTTACA
168255 AAATACTTGTTTTTCACTTC
1 AAATACTTGTTTTTCAC-TC
168275 AAATCACTTCGTTTTTCA-TC
1 AAAT-ACTT-GTTTTTCACTC
168295 AAA
1 AAA
168298 ACCAGCATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 9 0.43
21 4 0.19
22 8 0.38
ACGTcount: A:0.30, C:0.21, G:0.05, T:0.44
Consensus pattern (19 bp):
AAATACTTGTTTTTCACTC
Found at i:170708 original size:13 final size:13
Alignment explanation
Indices: 170690--170715 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
170680 TACACCAAGT
170690 ATGTATCGATACA
1 ATGTATCGATACA
170703 ATGTATCGATACA
1 ATGTATCGATACA
170716 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:170713 original size:32 final size:33
Alignment explanation
Indices: 170672--170735 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
170662 TAGCCAAACT
* **
170672 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
170704 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
170736 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:171140 original size:20 final size:20
Alignment explanation
Indices: 171117--171189 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
171107 ACAATTCAAA
171117 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
171137 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
171158 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
171178 GTATCGATACAT
1 GTATCGATACAT
171190 AAAAAAGTTG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:171161 original size:21 final size:21
Alignment explanation
Indices: 171135--171210 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
171125 ACATGTTGCA
171135 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
171156 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
171176 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
*
171197 TTGTATCGATACAT
1 ATGTATCGATACAT
171211 TTCTTGGCAG
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 15 0.34
21 29 0.66
ACGTcount: A:0.41, C:0.12, G:0.17, T:0.30
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:171168 original size:41 final size:41
Alignment explanation
Indices: 171117--171210 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
171107 ACAATTCAAA
*
171117 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
*
171158 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGTT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
171199 GTATCGATACAT
1 GTATCGATACAT
171211 TTCTTGGCAG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:171267 original size:13 final size:13
Alignment explanation
Indices: 171249--171274 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
171239 TACAGCAAGT
171249 ATGTATCGATACA
1 ATGTATCGATACA
171262 ATGTATCGATACA
1 ATGTATCGATACA
171275 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:175359 original size:15 final size:15
Alignment explanation
Indices: 175339--175369 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
175329 TAAAAATGTC
*
175339 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
175354 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
175369 C
1 C
175370 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:177462 original size:20 final size:21
Alignment explanation
Indices: 177383--177461 Score: 72
Period size: 20 Copynumber: 3.7 Consensus size: 21
177373 AATGTCCAAA
*
177383 ATGTATCGATACATGTTTT-T
1 ATGTATCGATACATCTTTTCT
* *
177403 GTGTATCGATACATCTGGAAATTCT
1 ATGTATCGATACATCT----TTTCT
177428 ATGTATCGATACAT-TTTTCT
1 ATGTATCGATACATCTTTTCT
*
177448 TTGTATCGATACAT
1 ATGTATCGATACAT
177462 TGTATCGATA
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
20 31 0.65
24 3 0.06
25 14 0.29
ACGTcount: A:0.27, C:0.14, G:0.15, T:0.44
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTCT
Found at i:177466 original size:13 final size:13
Alignment explanation
Indices: 177448--177486 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
177438 ACATTTTTCT
177448 TTGTATCGATACA
1 TTGTATCGATACA
177461 TTGTATCGATACA
1 TTGTATCGATACA
*
177474 CTGTATCGATACA
1 TTGTATCGATACA
177487 GGGTGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:179954 original size:20 final size:20
Alignment explanation
Indices: 179931--180003 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
179921 ACAATTCAAA
179931 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
179951 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
179972 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
179992 GTATCGATACAT
1 GTATCGATACAT
180004 AAAAAAGTTG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:179975 original size:21 final size:21
Alignment explanation
Indices: 179949--180024 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
179939 ACATGTTGCA
179949 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
179970 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
179990 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
*
180011 TTGTATCGATACAT
1 ATGTATCGATACAT
180025 TTCTTGGCAG
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 15 0.34
21 29 0.66
ACGTcount: A:0.41, C:0.12, G:0.17, T:0.30
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:179982 original size:41 final size:41
Alignment explanation
Indices: 179931--180024 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
179921 ACAATTCAAA
*
179931 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
*
179972 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGTT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
180013 GTATCGATACAT
1 GTATCGATACAT
180025 TTCTTGGCAG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:180081 original size:13 final size:13
Alignment explanation
Indices: 180063--180088 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
180053 TACAGCAAGT
180063 ATGTATCGATACA
1 ATGTATCGATACA
180076 ATGTATCGATACA
1 ATGTATCGATACA
180089 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:181422 original size:644 final size:643
Alignment explanation
Indices: 180194--181423 Score: 2243
Period size: 644 Copynumber: 1.9 Consensus size: 643
180184 CACGGGAAAT
180194 CATTAAAACAAGCTCCAACAAGTCAATAACGGCTAGAAACTCCACTAATCAAACTCCAACGGCTA
1 CATTAAAACAAGCTCCAACAAGTCAATAACGGCTAGAAACTCCACTAATCAAACTCCAACGGCTA
180259 CAACAACATTGAAGCCTATAAATAAGAGCTTCCAGCAGCAAAACACAAGAAGAGAGAAGTAGAAC
66 CAACAACATTGAAGCCTATAAATAAGAGCTTCCAGCAGCAAAACACAAGAAGAGAGAAGTAGAAC
*
180324 CAAGCAAGAAACATCTAGCATTCAAAGATCAAAGCGTTTTATATTTTTCAAGAGCTTTTGTTTAT
131 CAAGCAAGAAACATCTAGCATTCAAAGATCAAAGCGTTTTATATTTTTCAAGAGCTTTTGTTCAT
*
180389 ATTGTCATTATTTTTTTCTAAGCTCTTTGTATTCTTATTTCGAGCTTAAATTCCCACAAACACAA
196 ATTGTCATTA-TCTTTTCTAAGCTCTTTGTATTCTTATTTCGAGCTTAAATTCCCACAAACACAA
180454 GCCTAGTTAGAGGCAAACTTTGTTTGTAGTAAATCCTTGTTGTCATAAGGTTGTGGTAAACCTTG
260 GCCTAGTTAGAGGCAAACTTTGTTTGTAGTAAATCCTTGTTGTCATAAGGTTGTGGTAAACCTTG
*
180519 AGAGAGAATTTCTTTGGAACTTGTGGTATAGTTCACAAAGAGATTGTAAGGTTGGTATCTTAGCC
325 AGAGAGAATCTCTTTGGAACTTGTGGTATAGTTCACAAAGAGATTGTAAGGTTGGTATCTTAGCC
*
180584 CGTAAAAAGATACGAGTTGTAAGGTTATACCTTTGCCTTCAAGGTAATCAATTCGGTTAGTGAAT
390 CGTAAAAAGATACGAGTTGTAAGGTTATACCTTTGCCTTAAAGGTAATCAATTCGGTTAGTGAAT
*
180649 TGGGTTATCACTCGACAAGGAAGTGTCGAGGAGAGAGGACGTAGGTACCGTATTTGGACCGAACC
455 TGGGTAATCACTCGACAAGGAAGTGTCGAGGAGAGAGGACGTAGGTACCGTATTTGGACCGAACC
*
180714 TCTATAAATATCTTGTGTCAAATTTTTCCTTCCCTAAATCTCTTTTTCGAATTGTGTTGTTTCAA
520 TCTATAAATATCTTGTGTCAAAGTTTTCCTTCCCTAAATCTCTTTTTCGAATTGTGTTGTTTCAA
180779 AACCGAAAATTCGAAAAAAACCAATTCACCCCCCCTCTTGGTTCGTTAATAAGCTTTCA
585 AACCGAAAATTCGAAAAAAACCAATTCACCCCCCCTCTTGGTTCGTTAATAAGCTTTCA
*
180838 CATTAAAACAAGCTCCAACAAGTCAATAACGGCTAGAAACTCCACTAATCAAACTCCAATGGCTA
1 CATTAAAACAAGCTCCAACAAGTCAATAACGGCTAGAAACTCCACTAATCAAACTCCAACGGCTA
180903 CAACAACATTGAAGCCTATAAATAAGAGCTTCCAGCAGCAAAACACAAGAAGAGAGAAGTAGAAC
66 CAACAACATTGAAGCCTATAAATAAGAGCTTCCAGCAGCAAAACACAAGAAGAGAGAAGTAGAAC
180968 CAAGCAAGAAACATCTAGCATTCAAAGATCAAAGCGTTTTATATTTTTCAAGAGCTTTTTGTTCA
131 CAAGCAAGAAACATCTAGCATTCAAAGATCAAAGCGTTTTATATTTTTCAAGAGC-TTTTGTTCA
181033 TATTGTCATTA-CTTTTCTAAGCTCTTTGTATTCTTATTTCGAGCTTAAATTCCCACAAACACAA
195 TATTGTCATTATCTTTTCTAAGCTCTTTGTATTCTTATTTCGAGCTTAAATTCCCACAAACACAA
* *
181097 GCCTAGTTAGAGGGAAACTTTGTTTGTAGTAAATCTTTGTTGTCATAAGGTTGTGGTAAACCTTG
260 GCCTAGTTAGAGGCAAACTTTGTTTGTAGTAAATCCTTGTTGTCATAAGGTTGTGGTAAACCTTG
* *
181162 AGAGAGAATCTCTTTGGAACTTGTGGTATAGTTCGCAACGAGATTGTAAGGTTGGTATCTTAGCC
325 AGAGAGAATCTCTTTGGAACTTGTGGTATAGTTCACAAAGAGATTGTAAGGTTGGTATCTTAGCC
181227 CGT-AAAAGATACGAGTTGTAAGGTTATACCTTTGCCTTAAAGGTAATCAATTCGGTTAGTGAAT
390 CGTAAAAAGATACGAGTTGTAAGGTTATACCTTTGCCTTAAAGGTAATCAATTCGGTTAGTGAAT
* *
181291 TGGGTAATCACTCGACAAGGAAGTGTCGAGGAGAGAGGACGTAGGTGCCGTGTTTGGACCGAACC
455 TGGGTAATCACTCGACAAGGAAGTGTCGAGGAGAGAGGACGTAGGTACCGTATTTGGACCGAACC
* *
181356 TCTATAAATA-CTTTGTGTC-AAGTTTTCCTTCCCTAAACTCTTTTCATTTCGAATTGTTTTGTT
520 TCTATAAATATC-TTGTGTCAAAGTTTTCCTTCCCTAAA-TCTCTT--TTTCGAATTGTGTTGTT
181419 TCAAA
581 TCAAA
181424 TTTGTTCAAA
Statistics
Matches: 566, Mismatches: 15, Indels: 10
0.96 0.03 0.02
Matches are distributed among these distances:
641 18 0.03
642 144 0.25
643 180 0.32
644 205 0.36
645 19 0.03
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.31
Consensus pattern (643 bp):
CATTAAAACAAGCTCCAACAAGTCAATAACGGCTAGAAACTCCACTAATCAAACTCCAACGGCTA
CAACAACATTGAAGCCTATAAATAAGAGCTTCCAGCAGCAAAACACAAGAAGAGAGAAGTAGAAC
CAAGCAAGAAACATCTAGCATTCAAAGATCAAAGCGTTTTATATTTTTCAAGAGCTTTTGTTCAT
ATTGTCATTATCTTTTCTAAGCTCTTTGTATTCTTATTTCGAGCTTAAATTCCCACAAACACAAG
CCTAGTTAGAGGCAAACTTTGTTTGTAGTAAATCCTTGTTGTCATAAGGTTGTGGTAAACCTTGA
GAGAGAATCTCTTTGGAACTTGTGGTATAGTTCACAAAGAGATTGTAAGGTTGGTATCTTAGCCC
GTAAAAAGATACGAGTTGTAAGGTTATACCTTTGCCTTAAAGGTAATCAATTCGGTTAGTGAATT
GGGTAATCACTCGACAAGGAAGTGTCGAGGAGAGAGGACGTAGGTACCGTATTTGGACCGAACCT
CTATAAATATCTTGTGTCAAAGTTTTCCTTCCCTAAATCTCTTTTTCGAATTGTGTTGTTTCAAA
ACCGAAAATTCGAAAAAAACCAATTCACCCCCCCTCTTGGTTCGTTAATAAGCTTTCA
Found at i:191155 original size:13 final size:13
Alignment explanation
Indices: 191137--191161 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
191127 AGATTGCACA
191137 GTATCGATACATT
1 GTATCGATACATT
191150 GTATCGATACAT
1 GTATCGATACAT
191162 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:191280 original size:13 final size:13
Alignment explanation
Indices: 191262--191287 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
191252 ACACACAATA
191262 TGTATCGATACAT
1 TGTATCGATACAT
191275 TGTATCGATACAT
1 TGTATCGATACAT
191288 CCCAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:191303 original size:33 final size:32
Alignment explanation
Indices: 191242--191308 Score: 107
Period size: 33 Copynumber: 2.1 Consensus size: 32
191232 CCTTAACTGT
*
191242 TTGTATCGATACACACAATATGTATCGATACA
1 TTGTATCGATACACACAAAATGTATCGATACA
*
191274 TTGTATCGATACATCCCAAAATGTATCGATACA
1 TTGTATCGATACA-CACAAAATGTATCGATACA
191307 TT
1 TT
191309 AGCTTGTAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 13 0.41
33 19 0.59
ACGTcount: A:0.36, C:0.19, G:0.12, T:0.33
Consensus pattern (32 bp):
TTGTATCGATACACACAAAATGTATCGATACA
Found at i:197458 original size:20 final size:20
Alignment explanation
Indices: 197423--197463 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 20
197413 CAAATTTCTT
197423 GTTTTTCACTTCAAAATACATC
1 GTTTTTCAC-TCAAAAT-CATC
197445 GTTTTTCA-TCAAAATCATC
1 GTTTTTCACTCAAAATCATC
197464 AACAAAAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 7 0.37
22 8 0.42
ACGTcount: A:0.32, C:0.22, G:0.05, T:0.41
Consensus pattern (20 bp):
GTTTTTCACTCAAAATCATC
Found at i:199189 original size:21 final size:22
Alignment explanation
Indices: 199149--199193 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 22
199139 TGAAATTGTT
199149 AAATTATTTTATTAAGGGGGAG
1 AAATTATTTTATTAAGGGGGAG
199171 AAATT-TTTTGATTAAGGGGGAG
1 AAATTATTTT-ATTAAGGGGGAG
199193 A
1 A
199194 GAAGAAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.36, C:0.00, G:0.29, T:0.36
Consensus pattern (22 bp):
AAATTATTTTATTAAGGGGGAG
Found at i:199765 original size:13 final size:13
Alignment explanation
Indices: 199747--199771 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
199737 AGATTGCACA
199747 GTATCGATACATT
1 GTATCGATACATT
199760 GTATCGATACAT
1 GTATCGATACAT
199772 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:199913 original size:33 final size:32
Alignment explanation
Indices: 199852--199919 Score: 100
Period size: 33 Copynumber: 2.1 Consensus size: 32
199842 CCTTAACTGT
* *
199852 TTGTATCGATACACACAACATGTATCGATACA
1 TTGTATCAATACACACAAAATGTATCGATACA
*
199884 TTGTATCAATACATCCCAAAATGTATCGATACA
1 TTGTATCAATACA-CACAAAATGTATCGATACA
199917 TTG
1 TTG
199920 GCTTGTAACG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 12 0.38
33 20 0.62
ACGTcount: A:0.37, C:0.21, G:0.12, T:0.31
Consensus pattern (32 bp):
TTGTATCAATACACACAAAATGTATCGATACA
Found at i:204446 original size:52 final size:52
Alignment explanation
Indices: 204300--204428 Score: 213
Period size: 52 Copynumber: 2.5 Consensus size: 52
204290 CGAAATATGA
*
204300 AAATTTGCCTGGATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
* * * *
204352 AACTTTGCCTGTATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
204404 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
204429 AAGATCAGTG
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 71 1.00
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
Found at i:204529 original size:19 final size:18
Alignment explanation
Indices: 204505--204634 Score: 101
Period size: 19 Copynumber: 7.8 Consensus size: 18
204495 TAGCTAACAT
204505 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
204524 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
*
204537 TGTATCAATACAACACTTA
1 TGTATCGATACAA-ACTTA
204556 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
204569 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
204588 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
204601 TGTATCGATACAACACTTTA
1 TGTATCGATACAA-AC-TTA
204621 TGTATCGATACAAA
1 TGTATCGATACAAA
204635 TCATTGAAAT
Statistics
Matches: 90, Mismatches: 2, Indels: 38
0.69 0.02 0.29
Matches are distributed among these distances:
13 32 0.36
14 3 0.03
16 6 0.07
18 2 0.02
19 34 0.38
20 13 0.14
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.34
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:204542 original size:13 final size:13
Alignment explanation
Indices: 204524--204612 Score: 61
Period size: 13 Copynumber: 5.9 Consensus size: 13
204514 ACAAAACTTA
204524 TGTATCGATACAT
1 TGTATCGATACAT
*
204537 TGTATCAATACAACACTT
1 TGTATCGAT---ACA--T
204555 ATGTATCGATACAT
1 -TGTATCGATACAT
204569 TGTATCGATACAACACTT
1 TGTATCGAT---ACA--T
204587 ATGTATCGATACAT
1 -TGTATCGATACAT
204601 TGTATCGATACA
1 TGTATCGATACA
204613 ACACTTTATG
Statistics
Matches: 62, Mismatches: 2, Indels: 24
0.70 0.02 0.27
Matches are distributed among these distances:
13 29 0.47
14 2 0.03
16 12 0.19
18 2 0.03
19 17 0.27
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:204542 original size:32 final size:32
Alignment explanation
Indices: 204501--204632 Score: 237
Period size: 32 Copynumber: 4.1 Consensus size: 32
204491 GCAGTAGCTA
*
204501 ACATTGTATCGATACAAAACTTATGTATCGAT
1 ACATTGTATCGATACAACACTTATGTATCGAT
*
204533 ACATTGTATCAATACAACACTTATGTATCGAT
1 ACATTGTATCGATACAACACTTATGTATCGAT
204565 ACATTGTATCGATACAACACTTATGTATCGAT
1 ACATTGTATCGATACAACACTTATGTATCGAT
204597 ACATTGTATCGATACAACACTTTATGTATCGAT
1 ACATTGTATCGATACAACAC-TTATGTATCGAT
204630 ACA
1 ACA
204633 AATCATTGAA
Statistics
Matches: 96, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
32 81 0.84
33 15 0.16
ACGTcount: A:0.36, C:0.18, G:0.11, T:0.34
Consensus pattern (32 bp):
ACATTGTATCGATACAACACTTATGTATCGAT
Found at i:208386 original size:20 final size:20
Alignment explanation
Indices: 208363--208412 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
208353 TTTATGGATG
208363 TATCGATACATTCTAAAT-TA
1 TATCGATACATT-TAAATGTA
* *
208383 TATCGATACATTTACATGTG
1 TATCGATACATTTAAATGTA
208403 TATCGATACA
1 TATCGATACA
208413 AATGAGGGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
19 4 0.15
20 23 0.85
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (20 bp):
TATCGATACATTTAAATGTA
Found at i:213078 original size:9 final size:8
Alignment explanation
Indices: 213063--213132 Score: 67
Period size: 8 Copynumber: 8.9 Consensus size: 8
213053 CTCAAAAAGT
*
213063 AAAAAAAG
1 AAAAAAAC
*
213071 AAACAAA-
1 AAAAAAAC
213078 AAAAAAAC
1 AAAAAAAC
213086 AAAAAACAC
1 AAAAAA-AC
213095 AAAAAAAC
1 AAAAAAAC
213103 --AAAAAC
1 AAAAAAAC
213109 AAAAAAA-
1 AAAAAAAC
213116 AAAAACAAC
1 AAAAA-AAC
213125 ACAAAAAA
1 A-AAAAAA
213133 GGGAGGGGTC
Statistics
Matches: 53, Mismatches: 2, Indels: 13
0.78 0.03 0.19
Matches are distributed among these distances:
6 6 0.11
7 11 0.21
8 21 0.40
9 11 0.21
10 4 0.08
ACGTcount: A:0.86, C:0.13, G:0.01, T:0.00
Consensus pattern (8 bp):
AAAAAAAC
Found at i:213084 original size:16 final size:16
Alignment explanation
Indices: 213063--213132 Score: 79
Period size: 17 Copynumber: 4.2 Consensus size: 16
213053 CTCAAAAAGT
* *
213063 AAAAAAAGAAACAAAAA
1 AAAAAAAAAAAC-ACAA
213080 AAAAACAAAAAACACAA
1 AAAAA-AAAAAACACAA
*
213097 AAAAACAAAAACA-AA
1 AAAAAAAAAAACACAA
213112 AAAAAAAAACAACACAA
1 AAAAAAAAA-AACACAA
213129 AAAA
1 AAAA
213133 GGGAGGGGTC
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
15 10 0.22
16 11 0.24
17 19 0.41
18 6 0.13
ACGTcount: A:0.86, C:0.13, G:0.01, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAAACACAA
Found at i:213098 original size:17 final size:17
Alignment explanation
Indices: 213078--213132 Score: 80
Period size: 17 Copynumber: 3.4 Consensus size: 17
213068 AAGAAACAAA
213078 AAAAAAACAAAAAACAC
1 AAAAAAACAAAAAACAC
213095 AAAAAAAC-AAAAACA-
1 AAAAAAACAAAAAACAC
213110 AAAAAAA-AAAACAACAC
1 AAAAAAACAAAA-AACAC
213127 AAAAAA
1 AAAAAA
213133 GGGAGGGGTC
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
15 10 0.29
16 11 0.31
17 14 0.40
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (17 bp):
AAAAAAACAAAAAACAC
Found at i:213098 original size:29 final size:29
Alignment explanation
Indices: 213066--213132 Score: 91
Period size: 29 Copynumber: 2.2 Consensus size: 29
213056 AAAAAGTAAA
*
213066 AAAAGAAACAAAAA-AAAAACAAAAAACAC
1 AAAA-AAACAAAAACAAAAAAAAAAAACAC
213095 AAAAAAACAAAAACAAAAAAAAAAAACAAC
1 AAAAAAACAAAAACAAAAAAAAAAAAC-AC
213125 ACAAAAAA
1 A-AAAAAA
213133 GGGAGGGGTC
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
28 9 0.26
29 16 0.47
30 3 0.09
31 6 0.18
ACGTcount: A:0.85, C:0.13, G:0.01, T:0.00
Consensus pattern (29 bp):
AAAAAAACAAAAACAAAAAAAAAAAACAC
Found at i:213109 original size:34 final size:31
Alignment explanation
Indices: 213063--213132 Score: 95
Period size: 33 Copynumber: 2.2 Consensus size: 31
213053 CTCAAAAAGT
*
213063 AAAAAAAGAAACAAAAAAAAAACAAAAAACACA
1 AAAAAAAAAAAC-AAAAAAAAA-AAAAAACACA
*
213096 AAAAAACAAAAACAAAAAAAAAAAACAACACA
1 AAAAAA-AAAAACAAAAAAAAAAAAAAACACA
213128 AAAAA
1 AAAAA
213133 GGGAGGGGTC
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
32 14 0.41
33 15 0.44
34 5 0.15
ACGTcount: A:0.86, C:0.13, G:0.01, T:0.00
Consensus pattern (31 bp):
AAAAAAAAAAACAAAAAAAAAAAAAAACACA
Found at i:213113 original size:32 final size:32
Alignment explanation
Indices: 213063--213132 Score: 99
Period size: 32 Copynumber: 2.2 Consensus size: 32
213053 CTCAAAAAGT
*
213063 AAAAAAAGAAACAAAAAAAAAACAAAA-AACAC
1 AAAAAAACAAACAAAAAAAAAA-AAAACAACAC
213095 AAAAAAACAAA-AACAAAAAAAAAAAACAACAC
1 AAAAAAACAAACAA-AAAAAAAAAAAACAACAC
213127 AAAAAA
1 AAAAAA
213133 GGGAGGGGTC
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
31 6 0.17
32 29 0.83
ACGTcount: A:0.86, C:0.13, G:0.01, T:0.00
Consensus pattern (32 bp):
AAAAAAACAAACAAAAAAAAAAAAAACAACAC
Found at i:213130 original size:10 final size:9
Alignment explanation
Indices: 213071--213132 Score: 62
Period size: 9 Copynumber: 7.3 Consensus size: 9
213061 GTAAAAAAAG
*
213071 AAACAAAAA
1 AAACACAAA
*
213080 AAAAACAAA
1 AAACACAAA
213089 AAACACAAA
1 AAACACAAA
213098 AAA-AC-AA
1 AAACACAAA
213105 AAACA-AAA
1 AAACACAAA
213113 AAA-A-AAA
1 AAACACAAA
213120 ACAACACAAA
1 A-AACACAAA
213130 AAA
1 AAA
213133 GGGAGGGGTC
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
7 10 0.22
8 10 0.22
9 21 0.47
10 4 0.09
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (9 bp):
AAACACAAA
Found at i:213132 original size:1 final size:1
Alignment explanation
Indices: 213063--213120 Score: 53
Period size: 1 Copynumber: 58.0 Consensus size: 1
213053 CTCAAAAAGT
* * * * * * *
213063 AAAAAAAGAAACAAAAAAAAAACAAAAAACACAAAAAAACAAAAACAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
213121 CAACACAAAA
Statistics
Matches: 43, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 43 1.00
ACGTcount: A:0.88, C:0.10, G:0.02, T:0.00
Consensus pattern (1 bp):
A
Found at i:214332 original size:14 final size:14
Alignment explanation
Indices: 214313--214350 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
214303 AATTCACCAT
*
214313 TTGTCAAGAAATGG
1 TTGTCAAGAAATGA
*
214327 TTGTCAAGAAATTA
1 TTGTCAAGAAATGA
214341 TTGTCAAGAA
1 TTGTCAAGAA
214351 CTTTTGTTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.39, C:0.08, G:0.21, T:0.32
Consensus pattern (14 bp):
TTGTCAAGAAATGA
Found at i:214437 original size:28 final size:28
Alignment explanation
Indices: 214404--214985 Score: 660
Period size: 28 Copynumber: 20.6 Consensus size: 28
214394 TGTCAATACG
**
214404 ACCTTTTCAAAGCCCACAAGTTGGTGGC
1 ACCTTTTCAAAGCCCACAAGTCAGTGGC
* * *
214432 ATCTTTTTAAAGCCCACAAGTCAGTTGC
1 ACCTTTTCAAAGCCCACAAGTCAGTGGC
* * * *
214460 ACCTTCTCAAAGCCCACAAGCCAATGGT
1 ACCTTTTCAAAGCCCACAAGTCAGTGGC
* * *
214488 ATCCTTTT-AAAGCCTATAAATCAGTGGC
1 A-CCTTTTCAAAGCCCACAAGTCAGTGGC
*
214516 ATCC-TTTCAAAGCCCACAAGTTAGTGGC
1 A-CCTTTTCAAAGCCCACAAGTCAGTGGC
* *
214544 ACCTTTTCAAAGCTCACAAGTCAATGGC
1 ACCTTTTCAAAGCCCACAAGTCAGTGGC
* *
214572 ACCTTTTCAAAGCTCACAAGTCAATGGC
1 ACCTTTTCAAAGCCCACAAGTCAGTGGC
214600 ACCTTTTCAAAGCCCACAAGTCAGTGGC
1 ACCTTTTCAAAGCCCACAAGTCAGTGGC
* *
214628 ACCTTCTT-AAAGCCCACAAATCAATGGC
1 ACCTT-TTCAAAGCCCACAAGTCAGTGGC
*
214656 ATCC-TTTCAAAGCCCACTAGTCAGTGGC
1 A-CCTTTTCAAAGCCCACAAGTCAGTGGC
*
214684 AACTTTTCAAAGCCCACAAGTCAGTGGC
1 ACCTTTTCAAAGCCCACAAGTCAGTGGC
*
214712 ATCC-TTTCAAAGCCCACAAGTTAGTGGC
1 A-CCTTTTCAAAGCCCACAAGTCAGTGGC
*
214740 ATCC-TTTCAAAGCCCACAAGTCAATGGC
1 A-CCTTTTCAAAGCCCACAAGTCAGTGGC
* *
214768 ACCTTCTCAAAACCCACAAGTCAGTGGC
1 ACCTTTTCAAAGCCCACAAGTCAGTGGC
*
214796 ACCTTCTT-AAAGCCCATAAGTCAGTGGC
1 ACCTT-TTCAAAGCCCACAAGTCAGTGGC
*
214824 ACCTTTTCAAAGCCCACAAGTCAGTGGA
1 ACCTTTTCAAAGCCCACAAGTCAGTGGC
* * *
214852 ACCTTCTCAAAGGCCACAAGTTAGTGGC
1 ACCTTTTCAAAGCCCACAAGTCAGTGGC
*
214880 ATCC-TTTAAAAGCCCACAAGTCAGTGGC
1 A-CCTTTTCAAAGCCCACAAGTCAGTGGC
* * *
214908 ATCTTTTCAAAACCCACAAGTTAGTGGC
1 ACCTTTTCAAAGCCCACAAGTCAGTGGC
*
214936 ATCC-TTTCAAAGCCCACACAAGTCATTGGC
1 A-CCTTTTCAAAG-CC-CACAAGTCAGTGGC
*
214966 AACTTTTTCTAAAGCCCACA
1 -ACCTTTTC-AAAGCCCACA
214986 TAAGTTGGTG
Statistics
Matches: 471, Mismatches: 64, Indels: 36
0.82 0.11 0.06
Matches are distributed among these distances:
27 13 0.03
28 414 0.88
29 16 0.03
30 17 0.04
31 7 0.01
32 4 0.01
ACGTcount: A:0.31, C:0.30, G:0.16, T:0.24
Consensus pattern (28 bp):
ACCTTTTCAAAGCCCACAAGTCAGTGGC
Found at i:216088 original size:20 final size:20
Alignment explanation
Indices: 216026--216119 Score: 109
Period size: 20 Copynumber: 4.8 Consensus size: 20
216016 TTTTACCCAG
* *
216026 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTATAA
* * *
216046 ATGCATCGATACATTTTTTA
1 ATGTATCGATACATTTATAA
*
216066 ATGTATCGATACATGTATAA
1 ATGTATCGATACATTTATAA
* *
216086 ATGTATCGGTACA-TTAAAA
1 ATGTATCGATACATTTATAA
216105 ATGTATCGATACATT
1 ATGTATCGATACATT
216120 CAATACATCT
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
19 16 0.25
20 47 0.75
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39
Consensus pattern (20 bp):
ATGTATCGATACATTTATAA
Found at i:216108 original size:19 final size:19
Alignment explanation
Indices: 216065--216119 Score: 83
Period size: 19 Copynumber: 2.8 Consensus size: 19
216055 TACATTTTTT
*
216065 AATGTATCGATACATGTATA
1 AATGTATCGATACAT-TAAA
*
216085 AATGTATCGGTACATTAAA
1 AATGTATCGATACATTAAA
216104 AATGTATCGATACATT
1 AATGTATCGATACATT
216120 CAATACATCT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 18 0.56
20 14 0.44
ACGTcount: A:0.40, C:0.11, G:0.15, T:0.35
Consensus pattern (19 bp):
AATGTATCGATACATTAAA
Found at i:217059 original size:20 final size:21
Alignment explanation
Indices: 217020--217059 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
217010 AAGCCTTTGA
*
217020 TCATGCATTTTTTACTATGTT
1 TCATGCATTTTTAACTATGTT
217041 TCATGCATTTTTAAC-ATGT
1 TCATGCATTTTTAACTATGT
217060 CCAGCATCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.23, C:0.15, G:0.10, T:0.53
Consensus pattern (21 bp):
TCATGCATTTTTAACTATGTT
Found at i:221569 original size:638 final size:639
Alignment explanation
Indices: 220350--221627 Score: 2391
Period size: 638 Copynumber: 2.0 Consensus size: 639
220340 AACATTAAAG
220350 AACCATCAGGCCACAAGAAGGTTTTAACTACCAATTATAGGGACAATCATTAAAAGTAGTACACA
1 AACCATCAGGCCACAAGAAGGTTTTAACTACCAATTATAGGGACAATCATTAAAAGTAGTACACA
* *
220415 AGTGCTCGTGATTTTGGATATCCTATTGCAAAGTCATTACTAGCATTCATTTAGGATCTTTGAAA
66 AGTGCTCGTGATTTTGGATATCCTATTGCAAAGTCATTACTAGCACTCATTTAGGATCTTTCAAA
*
220480 TTGGTTTTAACTCTAGATTGCAGTATCTAAAAATTAGGTGATCCTAAAAGATGGATGTTTAAGTT
131 TTGGTTTTAACTCTAGATTGCAATATCTAAAAATTAGGTGATCCTAAAAGATGGATGTTTAAGTT
*
220545 TCGGTTAAAAATATTGATATTTACTACAAATAAGTCCTTTCCTAAAGATCCGTAAGGAAATTCAA
196 TCGGTTAAAAATATTGATATTTACTACAAATAAGTCCTTCCCTAAAGATCCGTAAGGAAATTCAA
**
220610 CTGTTTTTGTGTTTATGTCTTATGTTTCCTTTTTAATGTTATTTTATTGATCTTTAAAATTTGTT
261 CTAATTTTGTGTTTATGTCTTATGTTTCCTTTTTAATGTTATTTTATTGATCTTTAAAATTTGTT
*
220675 AGGATCTTGGTTTTGATATAACAAAGTTTGAATAAAACCAAAAAATACTTTTAAAAACCGTAATA
326 AGGATCTTGGTTTTGATATAACAAAGTTTGAATAAAACCAAAAAATACTTTGAAAAACCGTAATA
*
220740 AGTTTGATTCACTTCAAAATACTCTGAAACCTTGTTCAAAATAGTTTTCAATATCAAAGATGTTT
391 AGTTTGATTCACTTCAAAATACTCTGAAACCTTGGTCAAAATAGTTTTCAATATCAAAGATGTTT
220805 TAGAGTTTCATATAAGTGTTTTCAAGCCTTAAATCGAATGTTATTAAGTAAAAATATCCCAAAGT
456 TAGAGTTTCATATAAGTGTTTTCAAGCCTTAAATCGAATGTTATTAAGTAAAAATATCCCAAAGT
*
220870 ATCGATACATAGGTATTTGTATCAATACATTAGGGCTGACTTAGGCTACAACAGTCAAAATCCTA
521 ATCGATACATAGGTATTTGTATCAATACATTAGGGCTGACTTAGGCTACAACAGGCAAAATCCTA
*
220935 GAAAGTATCGATACATATCTAGATGTATTGATACATTATGCTTTGTATCGATAC
586 GAAAGTATCGATACACATCTAGATGTATTGATACATTATGCTTTGTATCGATAC
*
220989 AACCATCAGGCCTCAAGAAGGTTTT-ACGTACCAATTATAGGGACAATCATTAAAAGTAGTACAC
1 AACCATCAGGCCACAAGAAGGTTTTAAC-TACCAATTATAGGGACAATCATTAAAAGTAGTACAC
221053 AAGTGCTCGTGATTTTGGATATCCTATTGCAAAGTCATTACT-GCCACTCATTTAGGATCTTTCA
65 AAGTGCTCGTGATTTTGGATATCCTATTGCAAAGTCATTACTAG-CACTCATTTAGGATCTTTCA
221117 AATTGGTTTTAACTCTAGATTGCAATATCTAAAAATTAGGTGATCCTAAAAGATGGATGTTTAAG
129 AATTGGTTTTAACTCTAGATTGCAATATCTAAAAATTAGGTGATCCTAAAAGATGGATGTTTAAG
*
221182 TTTCGGTTAAAAATTTTGATATTTACTACAAATAAGTCCTTCCCTAAAGATCCGTAAGGAAATTC
194 TTTCGGTTAAAAATATTGATATTTACTACAAATAAGTCCTTCCCTAAAGATCCGTAAGGAAATTC
*
221247 GAC-AATTTTGTGTTTATGTCTTATGTTTCCTTTTTAATGTTATTTTATTGATCTTTAAAATTTG
259 AACTAATTTTGTGTTTATGTCTTATGTTTCCTTTTTAATGTTATTTTATTGATCTTTAAAATTTG
*
221311 TTATGATCTTGGTTTTGATATAACAAAGTTTGAATAAAACCAAAAAATACTTTGAAAAACCGTAA
324 TTAGGATCTTGGTTTTGATATAACAAAGTTTGAATAAAACCAAAAAATACTTTGAAAAACCGTAA
221376 TAAGTTTGATTCACTTCAAAATACTCTGAAACCTTGGTCAAAATAGTTTTCAATATCAAAGATGT
389 TAAGTTTGATTCACTTCAAAATACTCTGAAACCTTGGTCAAAATAGTTTTCAATATCAAAGATGT
221441 TTTAGAGTTTCATATAAGTGTTTTCAAGCCTTAAATCGAATGTTATTAAGTAAAAATATCCCAAA
454 TTTAGAGTTTCATATAAGTGTTTTCAAGCCTTAAATCGAATGTTATTAAGTAAAAATATCCCAAA
221506 GTATCGATACATAGGTATTTGTATCAATACATTAGGGCTGACTTAGGCTACAACAGGCAAAATCC
519 GTATCGATACATAGGTATTTGTATCAATACATTAGGGCTGACTTAGGCTACAACAGGCAAAATCC
221571 TAGAAAGTATCGATACACATCTAGATGTATTGATACATTATGCTTTGTATCGATAC
584 TAGAAAGTATCGATACACATCTAGATGTATTGATACATTATGCTTTGTATCGATAC
221627 A
1 A
221628 TGTTCATTGT
Statistics
Matches: 623, Mismatches: 14, Indels: 5
0.97 0.02 0.01
Matches are distributed among these distances:
638 374 0.60
639 249 0.40
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.36
Consensus pattern (639 bp):
AACCATCAGGCCACAAGAAGGTTTTAACTACCAATTATAGGGACAATCATTAAAAGTAGTACACA
AGTGCTCGTGATTTTGGATATCCTATTGCAAAGTCATTACTAGCACTCATTTAGGATCTTTCAAA
TTGGTTTTAACTCTAGATTGCAATATCTAAAAATTAGGTGATCCTAAAAGATGGATGTTTAAGTT
TCGGTTAAAAATATTGATATTTACTACAAATAAGTCCTTCCCTAAAGATCCGTAAGGAAATTCAA
CTAATTTTGTGTTTATGTCTTATGTTTCCTTTTTAATGTTATTTTATTGATCTTTAAAATTTGTT
AGGATCTTGGTTTTGATATAACAAAGTTTGAATAAAACCAAAAAATACTTTGAAAAACCGTAATA
AGTTTGATTCACTTCAAAATACTCTGAAACCTTGGTCAAAATAGTTTTCAATATCAAAGATGTTT
TAGAGTTTCATATAAGTGTTTTCAAGCCTTAAATCGAATGTTATTAAGTAAAAATATCCCAAAGT
ATCGATACATAGGTATTTGTATCAATACATTAGGGCTGACTTAGGCTACAACAGGCAAAATCCTA
GAAAGTATCGATACACATCTAGATGTATTGATACATTATGCTTTGTATCGATAC
Found at i:221639 original size:19 final size:20
Alignment explanation
Indices: 221615--221668 Score: 74
Period size: 19 Copynumber: 2.8 Consensus size: 20
221605 ACATTATGCT
*
221615 TTGTATCGATACATGTTC-A
1 TTGTATCGATACATGCTCAA
*
221634 TTGTATCGATACATACTCAA
1 TTGTATCGATACATGCTCAA
*
221654 TTGTATTGATACATG
1 TTGTATCGATACATG
221669 AAACTGGCAG
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 16 0.53
20 14 0.47
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (20 bp):
TTGTATCGATACATGCTCAA
Found at i:223356 original size:9 final size:9
Alignment explanation
Indices: 223342--223371 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
223332 TCAACCATTA
223342 AAGATGATG
1 AAGATGATG
223351 AAGATGATG
1 AAGATGATG
*
223360 ATGATGATG
1 AAGATGATG
223369 AAG
1 AAG
223372 TTGACTCGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.33, T:0.23
Consensus pattern (9 bp):
AAGATGATG
Found at i:230085 original size:23 final size:24
Alignment explanation
Indices: 230040--230086 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
230030 TAAAGAATTG
*
230040 AACACAAATTCAATTAAGCACAAA
1 AACACAAATTCAATTAAGAACAAA
230064 AACACAAA-TCAATTGAA-AACAAA
1 AACACAAATTCAATT-AAGAACAAA
230087 TTTTCAACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 11 0.52
24 10 0.48
ACGTcount: A:0.62, C:0.19, G:0.04, T:0.15
Consensus pattern (24 bp):
AACACAAATTCAATTAAGAACAAA
Found at i:233199 original size:13 final size:13
Alignment explanation
Indices: 233181--233206 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
233171 CAATTTTTTG
233181 TGTATCGATACAT
1 TGTATCGATACAT
233194 TGTATCGATACAT
1 TGTATCGATACAT
233207 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:233221 original size:32 final size:33
Alignment explanation
Indices: 233161--233224 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
233151 TACAAGCCAA
** *
233161 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
233194 TGTATCGATAC-ATACTTGGTGTATCGATACA
1 TGTATCGATACAATACTTGGTGTATCGATACA
233225 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATACAT
Found at i:238524 original size:32 final size:33
Alignment explanation
Indices: 238464--238526 Score: 92
Period size: 32 Copynumber: 1.9 Consensus size: 33
238454 TACAAGCCAA
** *
238464 TGTATCGATACAATTTTTTGTGTATCGATACCT
1 TGTATCGATACAATACTTGGTGTATCGATACCT
238497 TGTATCGATAC-ATACTTGGTGTATCGATAC
1 TGTATCGATACAATACTTGGTGTATCGATAC
238527 AAGTTTGCTA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 16 0.59
33 11 0.41
ACGTcount: A:0.25, C:0.16, G:0.17, T:0.41
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATACCT
Found at i:242159 original size:20 final size:19
Alignment explanation
Indices: 242136--242208 Score: 76
Period size: 20 Copynumber: 3.7 Consensus size: 19
242126 CACATCCAAA
242136 TGTATCGATACAT-TATGCAT
1 TGTATCGATACATGT-T-CAT
*
242156 TGTATCAATACATGTTCAT
1 TGTATCGATACATGTTCAT
* *
242175 TGTATCGATACATACTTAAT
1 TGTATCGATACAT-GTTCAT
*
242195 TATATCGATACATG
1 TGTATCGATACATG
242209 AAACTGGCAG
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
19 15 0.33
20 29 0.64
21 1 0.02
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.40
Consensus pattern (19 bp):
TGTATCGATACATGTTCAT
Found at i:245197 original size:13 final size:13
Alignment explanation
Indices: 245179--245216 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
245169 TGTTGGGCTC
245179 AATGTATCGATAA
1 AATGTATCGATAA
*
245192 AATGTATCGATAC
1 AATGTATCGATAA
245205 AATGTATCGATA
1 AATGTATCGATA
245217 TTGAGTGAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.42, C:0.11, G:0.16, T:0.32
Consensus pattern (13 bp):
AATGTATCGATAA
Found at i:246071 original size:33 final size:33
Alignment explanation
Indices: 246005--246071 Score: 82
Period size: 33 Copynumber: 2.0 Consensus size: 33
245995 CGTTAAGCAT
* *
246005 AATGTATCGATACAATTCTTCATATATCGATAC
1 AATGTATCGATACAATTCTCCATATATCAATAC
* *
246038 AATGTATCGATAC-ATTGTCCCATTTATCAATAC
1 AATGTATCGATACAATTCT-CCATATATCAATAC
246071 A
1 A
246072 TTTCACTTAG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
32 4 0.14
33 25 0.86
ACGTcount: A:0.36, C:0.19, G:0.09, T:0.36
Consensus pattern (33 bp):
AATGTATCGATACAATTCTCCATATATCAATAC
Found at i:246145 original size:19 final size:19
Alignment explanation
Indices: 246100--246155 Score: 85
Period size: 19 Copynumber: 2.9 Consensus size: 19
246090 CTGCCACTTT
*
246100 CATGTATCGATACAATTGAG
1 CATGTATCGATACAA-TGAA
*
246120 TATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
246139 CATGTATCGATACAATG
1 CATGTATCGATACAATG
246156 TATCAATACA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 19 0.58
20 14 0.42
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.30
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:250950 original size:24 final size:24
Alignment explanation
Indices: 250917--250994 Score: 85
Period size: 24 Copynumber: 3.4 Consensus size: 24
250907 GGAAGAGTTA
250917 GATTCATCAAAAACAATGTGGATT
1 GATTCATCAAAAACAATGTGGATT
* *
250941 GATTCTTCAACAACTAA---GGA--
1 GATTCATCAAAAAC-AATGTGGATT
250961 GATTCATCAAAAACAATGTGGATT
1 GATTCATCAAAAACAATGTGGATT
*
250985 GATTCTTCAA
1 GATTCATCAA
250995 CAACTAAGGT
Statistics
Matches: 43, Mismatches: 5, Indels: 12
0.72 0.08 0.20
Matches are distributed among these distances:
19 2 0.05
20 12 0.28
22 6 0.14
24 21 0.49
25 2 0.05
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.29
Consensus pattern (24 bp):
GATTCATCAAAAACAATGTGGATT
Found at i:250966 original size:44 final size:44
Alignment explanation
Indices: 250916--251003 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
250906 CGGAAGAGTT
250916 AGATTCATCAAAAACAATGTGGATTGATTCTTCAACAACTAAGG
1 AGATTCATCAAAAACAATGTGGATTGATTCTTCAACAACTAAGG
250960 AGATTCATCAAAAACAATGTGGATTGATTCTTCAACAACTAAGG
1 AGATTCATCAAAAACAATGTGGATTGATTCTTCAACAACTAAGG
251004 TTCTTTTATT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.27
Consensus pattern (44 bp):
AGATTCATCAAAAACAATGTGGATTGATTCTTCAACAACTAAGG
Found at i:250984 original size:20 final size:21
Alignment explanation
Indices: 250916--250984 Score: 63
Period size: 20 Copynumber: 3.2 Consensus size: 21
250906 CGGAAGAGTT
250916 AGATTCATCAAAAACAATGTGG
1 AGATTCATCAAAAACAATGT-G
* *
250938 ATTGATTCTTCAACAACTAA-G-G
1 A--GATTCATCAAAAAC-AATGTG
250960 AGATTCATCAAAAACAATGTG
1 AGATTCATCAAAAACAATGTG
250981 -GATT
1 AGATT
250985 GATTCTTCAA
Statistics
Matches: 38, Mismatches: 4, Indels: 12
0.70 0.07 0.22
Matches are distributed among these distances:
19 2 0.05
20 17 0.45
21 1 0.03
22 3 0.08
24 13 0.34
25 2 0.05
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.28
Consensus pattern (21 bp):
AGATTCATCAAAAACAATGTG
Found at i:254407 original size:55 final size:55
Alignment explanation
Indices: 254323--254436 Score: 210
Period size: 55 Copynumber: 2.1 Consensus size: 55
254313 TCCAAATACG
* *
254323 ACACCTACGTCCTCTCTTCTTAATACTTTTTTGTCGAATGTTACCACAATTCACT
1 ACACCTAAGTCCTCTCTCCTTAATACTTTTTTGTCGAATGTTACCACAATTCACT
254378 ACACCTAAGTCCTCTCTCCTTAATACTTTTTTGTCGAATGTTACCACAATTCACT
1 ACACCTAAGTCCTCTCTCCTTAATACTTTTTTGTCGAATGTTACCACAATTCACT
254433 ACAC
1 ACAC
254437 GAATTAATTA
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
55 57 1.00
ACGTcount: A:0.25, C:0.30, G:0.07, T:0.38
Consensus pattern (55 bp):
ACACCTAAGTCCTCTCTCCTTAATACTTTTTTGTCGAATGTTACCACAATTCACT
Found at i:255063 original size:19 final size:19
Alignment explanation
Indices: 255018--255073 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
255008 CTGCCACTTT
*
255018 CATGTATCGATACAATTGAG
1 CATGTATCGATACAA-TGAA
*
255038 TATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
*
255057 CATGTATTGATACAATG
1 CATGTATCGATACAATG
255074 TATCGATACA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 18 0.56
20 14 0.44
ACGTcount: A:0.38, C:0.12, G:0.18, T:0.32
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:260878 original size:20 final size:20
Alignment explanation
Indices: 260853--260893 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
260843 AGCTTATGAA
*
260853 AAAAGGGTCTAAGAATTCTT
1 AAAAGGATCTAAGAATTCTT
260873 AAAAGGATCTAAGAATTCTT
1 AAAAGGATCTAAGAATTCTT
260893 A
1 A
260894 CTTTGATAGC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.44, C:0.10, G:0.17, T:0.29
Consensus pattern (20 bp):
AAAAGGATCTAAGAATTCTT
Found at i:267287 original size:31 final size:31
Alignment explanation
Indices: 267216--268064 Score: 870
Period size: 33 Copynumber: 27.0 Consensus size: 31
267206 TGGGCCTTAA
* * * *
267216 AGAAGGGTTACCATCAACTTGTGTGGGCCTTAA
1 AGAAGGGTTGCCACCGACTTGTGTGGG-CTT-T
* * *
267249 AGAAGGGTTACCATCAACTTGTGTGGGCTTT
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTT
* *
267280 AGAAGGGTTGTCACCGACTTATGTGGGCTTT
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTT
267311 AGAAAAGGGTTGCCACCGACTTGTGTGGGCTTT
1 AG--AAGGGTTGCCACCGACTTGTGTGGGCTTT
** *
267344 AGAGAAGGGTTGTTATCGACTTGTGTGGGCTTT
1 --AGAAGGGTTGCCACCGACTTGTGTGGGCTTT
*
267377 AGAAAGGTTGCCACCGACTT-TGTGGGCTTT
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTT
* *
267407 AGAAAGGTTGCCATCGACTTGTGTGGGCTTT
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTT
* *
267438 AGAAGGGTTACCACTGACTTGTGTGGGCTTT
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTT
*
267469 A-AAGGGTTGCCACGGACTTGTGTGGG-TGTT
1 AGAAGGGTTGCCACCGACTTGTGTGGGCT-TT
*
267499 A-AAGGGTTGCCACCGACTTGTGTGAGCTTT
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTT
* *
267529 AGAGAAGGGTTGCCACCAAATTGTGTGGGCTTT
1 --AGAAGGGTTGCCACCGACTTGTGTGGGCTTT
* * **
267562 AGAAAAGGGATGCCACCAACTTGTGTGGTTTTT
1 AG--AAGGGTTGCCACCGACTTGTGTGGGCTTT
*
267595 AGAAGGGTTGCCACCGACTTGTGGGGGCTTT
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTT
* * *
267626 A-AAGGGTTACCACCAACTTGTGTGAGCTTT
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTT
*
267656 AGAAGGATTGCCACCGACTTGTGTGGGCTTT
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTT
* * * * *
267687 AGAGAAAGGTTACCACCGACTTATGTAGGTTTT
1 --AGAAGGGTTGCCACCGACTTGTGTGGGCTTT
* **
267720 AGAAGGGTTACCATAGACTTGTGTGGGCTTT
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTT
* *
267751 A-AAGGGTTGCCACCGACTTGTGTAGGCGTT
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTT
* *
267781 A-AAAGGTTGCCACCAACTTGTGTGGGCTTTGT
1 AGAAGGGTTGCCACCGACTTGTGTGGGC-TT-T
* * *
267813 AGAAGAGTTGCCACCAACTTGTGTAGGCTTT
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTT
* * * *
267844 AGAAAAGGTATGACACCGATTTGTGTGGGTTTT
1 AG-AAGGGT-TGCCACCGACTTGTGTGGGCTTT
* * *
267877 AGAGGGGTTGCCACCAACTTGTGTTGGCTTT
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTT
* *
267908 A-AAGGGTTACCACCGACTTGTGTGGGTTTT
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTT
**
267938 AG-AGGGATTATCACCGACTTGTGTGGGCTTT
1 AGAAGGG-TTGCCACCGACTTGTGTGGGCTTT
* * *
267969 AGAGAAGGGTTGCCACCGATTTGTATGAGCTTT
1 --AGAAGGGTTGCCACCGACTTGTGTGGGCTTT
*
268002 AGAAAAGGGTTGCCACCGAATTGTGTGGGCTTT
1 AG--AAGGGTTGCCACCGACTTGTGTGGGCTTT
* * *
268035 AGAAGGGTTGCCATCAACTTATGTGGGCTT
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTT
268065 GAAAAGGAAA
Statistics
Matches: 688, Mismatches: 101, Indels: 56
0.81 0.12 0.07
Matches are distributed among these distances:
29 1 0.00
30 183 0.27
31 232 0.34
32 16 0.02
33 250 0.36
34 4 0.01
35 2 0.00
ACGTcount: A:0.22, C:0.16, G:0.31, T:0.30
Consensus pattern (31 bp):
AGAAGGGTTGCCACCGACTTGTGTGGGCTTT
Found at i:267723 original size:282 final size:281
Alignment explanation
Indices: 267218--268047 Score: 1048
Period size: 282 Copynumber: 2.9 Consensus size: 281
267208 GGCCTTAAAG
* * * * * *
267218 AAGGGTTACCATCAACTTGTGTGGGCCTTAAAGAAGGGTTACCATCAACTTGTGTGGGCTTTAG-
1 AAGGGTTGCCACCAACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCAACTTGTGTGGGCTTTAGA
* * * *
267282 -AAGGGTTGTCACCGACTTATGTGGGCTTTAGAAAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
66 AAAGGGATGACACCGACTTGTGTGGGTTTTAG--AAGGGTTGCCACCGACTTGTGTGGGCTTT--
*** *
267346 AGAAGGGTTGTTATCGACTTGTGTGGGCTTTAGAAAGG-TTGCCACCGACTT-TGTGGGCTTT--
127 A-AAGGGTTACCACCGACTTGTGTGGGCTTTAG-AAGGATTGCCACCGACTTGTGTGGGCTTTAG
* *
267407 AGAAAGGTTGCCATCGACTTGTGTGGGCTTTAGAAGGGTTACCACTGACTTGTGTGGGCTTTAAA
190 AGAAAGGTTGCCACCGACTT-TGTAGGCTTTAGAAGGGTTACCACTGACTTGTGTGGGCTTTAAA
* * *
267472 GGGTTGCCACGGACTTGTGTGGGTGTTA
254 GGGTTGCCACCGACTTGTGTAGGCGTTA
* * *
267500 AAGGGTTGCCACCGACTTGTGTGAGCTTTAGAGAAGGGTTGCCACCAAATTGTGTGGGCTTTAGA
1 AAGGGTTGCCACCAACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCAACTTGTGTGGGCTTTAGA
* * * *
267565 AAAGGGATGCCACCAACTTGTGTGGTTTTTAGAAGGGTTGCCACCGACTTGTGGGGGCTTTAAAG
66 AAAGGGATGACACCGACTTGTGTGGGTTTTAGAAGGGTTGCCACCGACTTGTGTGGGCTTTAAAG
* *
267630 GGTTACCACCAACTTGTGTGAGCTTTAGAAGGATTGCCACCGACTTGTGTGGGCTTTAGAGAAAG
131 GGTTACCACCGACTTGTGTGGGCTTTAGAAGGATTGCCACCGACTTGTGTGGGCTTTAGAGAAAG
* *
267695 GTTACCACCGACTTATGTAGGTTTTAGAAGGGTTACCA-TAGACTTGTGTGGGCTTTAAAGGGTT
196 GTTGCCACCGACTT-TGTAGGCTTTAGAAGGGTTACCACT-GACTTGTGTGGGCTTTAAAGGGTT
267759 GCCACCGACTTGTGTAGGCGTTA
259 GCCACCGACTTGTGTAGGCGTTA
* * *
267782 AAAGGTTGCCACCAACTTGTGTGGGCTTT-GTAGAAGAGTTGCCACCAACTTGTGTAGGCTTTAG
1 AAGGGTTGCCACCAACTTGTGTGGGCTTTAG-AGAAGGGTTGCCACCAACTTGTGTGGGCTTTAG
* * * * *
267846 AAAAGGTATGACACCGATTTGTGTGGGTTTTAGAGGGGTTGCCACCAACTTGTGTTGGCTTTAAA
65 AAAAGGGATGACACCGACTTGTGTGGGTTTTAGAAGGGTTGCCACCGACTTGTGTGGGCTTTAAA
* * ** *
267911 GGGTTACCACCGACTTGTGTGGGTTTTAGAGGGATTATCACCGACTTGTGTGGGCTTTAGAGAAG
130 GGGTTACCACCGACTTGTGTGGGCTTTAGAAGGATTGCCACCGACTTGTGTGGGCTTTAGAGAAA
* * *
267976 GGTTGCCACCGA-TTTGTATGAGCTTTAGAAAAGGGTTGCCACCGAATTGTGTGGGCTTTAGAAG
195 GGTTGCCACCGACTTTGTA-G-GCTTTAG--AAGGGTTACCACTGACTTGTGTGGGCTTTA-AAG
268040 GGTTGCCA
255 GGTTGCCA
268048 TCAACTTATG
Statistics
Matches: 477, Mismatches: 57, Indels: 25
0.85 0.10 0.04
Matches are distributed among these distances:
278 4 0.01
279 38 0.08
280 15 0.03
281 5 0.01
282 353 0.74
284 51 0.11
285 11 0.02
ACGTcount: A:0.22, C:0.17, G:0.31, T:0.30
Consensus pattern (281 bp):
AAGGGTTGCCACCAACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCAACTTGTGTGGGCTTTAGA
AAAGGGATGACACCGACTTGTGTGGGTTTTAGAAGGGTTGCCACCGACTTGTGTGGGCTTTAAAG
GGTTACCACCGACTTGTGTGGGCTTTAGAAGGATTGCCACCGACTTGTGTGGGCTTTAGAGAAAG
GTTGCCACCGACTTTGTAGGCTTTAGAAGGGTTACCACTGACTTGTGTGGGCTTTAAAGGGTTGC
CACCGACTTGTGTAGGCGTTA
Found at i:268108 original size:32 final size:32
Alignment explanation
Indices: 268066--268167 Score: 116
Period size: 32 Copynumber: 3.2 Consensus size: 32
268056 TGTGGGCTTG
*
268066 AAAAGGAAAAAGGTGCCATAAAGTTGTGGACTT
1 AAAA-GAAAAAGGTGCCATAAAGTTATGGACTT
** * *
268099 AAAAGAAAAAGGTGCCATAGGGTTATAG-TTT
1 AAAAGAAAAAGGTGCCATAAAGTTATGGACTT
* *
268130 AAAAGAAAAATGGTGCTACAAAGTTATGGACTT
1 AAAAGAAAAA-GGTGCCATAAAGTTATGGACTT
268163 AAAAG
1 AAAAG
268168 GGTACCACGA
Statistics
Matches: 56, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
31 12 0.21
32 33 0.59
33 11 0.20
ACGTcount: A:0.45, C:0.08, G:0.25, T:0.23
Consensus pattern (32 bp):
AAAAGAAAAAGGTGCCATAAAGTTATGGACTT
Found at i:276947 original size:20 final size:20
Alignment explanation
Indices: 276922--276959 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
276912 ATTTGAGATG
276922 TGTATCAAGACATTCACTTA
1 TGTATCAAGACATTCACTTA
* *
276942 TGTATCGATACATTCACT
1 TGTATCAAGACATTCACT
276960 AATTGTATTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.37
Consensus pattern (20 bp):
TGTATCAAGACATTCACTTA
Found at i:276972 original size:21 final size:20
Alignment explanation
Indices: 276931--276974 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
276921 GTGTATCAAG
*
276931 ACATTCACTTATGTATCGAT
1 ACATTCACTAATGTATCGAT
*
276951 ACATTCACTAATTGTATTGAT
1 ACATTCACTAA-TGTATCGAT
276972 ACA
1 ACA
276975 AAATTTGTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.34, C:0.18, G:0.09, T:0.39
Consensus pattern (20 bp):
ACATTCACTAATGTATCGAT
Found at i:281892 original size:13 final size:13
Alignment explanation
Indices: 281874--281904 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
281864 AAAGAATTGA
281874 AGAGGGATACAAG
1 AGAGGGATACAAG
*
281887 AGAGGGATATAAG
1 AGAGGGATACAAG
281900 AGAGG
1 AGAGG
281905 AAGGAGAGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.45, C:0.03, G:0.42, T:0.10
Consensus pattern (13 bp):
AGAGGGATACAAG
Found at i:282002 original size:24 final size:26
Alignment explanation
Indices: 281968--282028 Score: 72
Period size: 27 Copynumber: 2.4 Consensus size: 26
281958 TAGCTACCAA
* *
281968 TTTTGATAAAC-AATAAG-CCACAAT
1 TTTTGACAAACAAAAAAGACCACAAT
*
281992 TTTTGACAAACAAAAAAGATCCACCAT
1 TTTTGACAAACAAAAAAGA-CCACAAT
282019 TTTTGACAAA
1 TTTTGACAAA
282029 TACAAAGTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 10 0.32
25 5 0.16
27 16 0.52
ACGTcount: A:0.46, C:0.18, G:0.08, T:0.28
Consensus pattern (26 bp):
TTTTGACAAACAAAAAAGACCACAAT
Found at i:282060 original size:27 final size:26
Alignment explanation
Indices: 281985--282062 Score: 93
Period size: 27 Copynumber: 2.9 Consensus size: 26
281975 AAACAATAAG
* * *
281985 CCACAATTTTTGACAAACAAAAAAGAT
1 CCACCATTTTTGACAAAC-ACAAAGAA
*
282012 CCACCATTTTTGACAAATACAAAGTAA
1 CCACCATTTTTGACAAACACAAAG-AA
*
282039 CTACCATTTTTGACAAACACAAAG
1 CCACCATTTTTGACAAACACAAAG
282063 GGTGGCTTTT
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
26 5 0.11
27 39 0.89
ACGTcount: A:0.46, C:0.22, G:0.08, T:0.24
Consensus pattern (26 bp):
CCACCATTTTTGACAAACACAAAGAA
Found at i:283968 original size:21 final size:22
Alignment explanation
Indices: 283944--283985 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
283934 TGTTGAAACT
* *
283944 CACCTGTTTTGGAGTA-TACTC
1 CACCTGCTGTGGAGTACTACTC
283965 CACCTGCTGTGGAGTACTACT
1 CACCTGCTGTGGAGTACTACT
283986 TGTCTGAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.19, C:0.26, G:0.21, T:0.33
Consensus pattern (22 bp):
CACCTGCTGTGGAGTACTACTC
Found at i:288245 original size:52 final size:52
Alignment explanation
Indices: 288175--288295 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
288165 GAAAATTTAT
*
288175 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
*
288227 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
288279 CTGCATGTATCGATACA
1 CTGCATGTATCGATACA
288296 AAGATCAGTG
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
Found at i:288308 original size:52 final size:51
Alignment explanation
Indices: 288175--288315 Score: 212
Period size: 52 Copynumber: 2.7 Consensus size: 51
288165 GAAAATTTAT
288175 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
* *
288227 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
*
288279 CTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 CTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
288316 ATGTATCGAT
Statistics
Matches: 82, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
51 2 0.02
52 80 0.98
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33
Consensus pattern (51 bp):
CTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:288322 original size:13 final size:13
Alignment explanation
Indices: 288304--288328 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
288294 CAAAGATCAG
288304 TGTATCGATACAA
1 TGTATCGATACAA
288317 TGTATCGATACA
1 TGTATCGATACA
288329 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:288411 original size:13 final size:13
Alignment explanation
Indices: 288393--288417 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
288383 ACAAAAAATA
288393 TGTATCGATACAT
1 TGTATCGATACAT
288406 TGTATCGATACA
1 TGTATCGATACA
288418 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:288413 original size:32 final size:33
Alignment explanation
Indices: 288372--288437 Score: 98
Period size: 32 Copynumber: 2.0 Consensus size: 33
288362 AGTAGCTTAA
288372 ATTGTATCGATACAA-AAAATATGTATCGATAC
1 ATTGTATCGATACAACAAAATATGTATCGATAC
***
288404 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAACAAAATATGTATCGATAC
288437 A
1 A
288438 GATCGTTGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 15 0.50
33 15 0.50
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.35
Consensus pattern (33 bp):
ATTGTATCGATACAACAAAATATGTATCGATAC
Found at i:289453 original size:49 final size:49
Alignment explanation
Indices: 289307--289465 Score: 147
Period size: 49 Copynumber: 3.1 Consensus size: 49
289297 AAAAGTGATA
* * * * *
289307 AAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCCTAAAGATGAG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT--G
* ** * * *
289358 AAAAAGGATGTCAACGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATG
1 ---AA-GATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
*
289411 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAAATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
*
289460 ATGATG
1 AAGATG
289466 AGAAGAGTGA
Statistics
Matches: 85, Mismatches: 19, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
49 45 0.53
50 2 0.02
53 1 0.01
54 2 0.02
55 35 0.41
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.25
Consensus pattern (49 bp):
AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
Found at i:289597 original size:49 final size:49
Alignment explanation
Indices: 289478--290096 Score: 778
Period size: 49 Copynumber: 12.9 Consensus size: 49
289468 AAGAGTGATA
* * * *
289478 AAGATGCCAATATGTTGATTCATGGCCAACGATATTGGACTT-AA-A-G
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* *
289524 --G-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
*
289570 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-AA-A-G
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* * *
289616 --G-TGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
*
289662 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* * * * * *
289711 AAGGTGCCAATGTGTTGAGTCAAGGCCAACTACATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
*
289760 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* * * * *
289809 AAGGTGCCAATGTGCTGAGTCAAGGCTAGCTACATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* * * *
289858 AAGATGCCAATATGCAGATTCAAGGCCAGCGATATTGGACTTAATGGTG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* * * * *
289907 AA-AGTGCCAATGTGTTGAGTCAAGGCCAGCTACATTGGACTTAAAGATA
1 AAGA-TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
*
289956 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* * * * *
290005 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATA
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* *
290054 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGGCTTA
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTA
290097 GAAGGGTTGC
Statistics
Matches: 490, Mismatches: 69, Indels: 25
0.84 0.12 0.04
Matches are distributed among these distances:
43 66 0.13
44 6 0.01
45 2 0.00
46 3 0.01
47 1 0.00
48 5 0.01
49 407 0.83
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (49 bp):
AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
Found at i:289744 original size:98 final size:98
Alignment explanation
Indices: 289478--290096 Score: 983
Period size: 98 Copynumber: 6.4 Consensus size: 98
289468 AAGAGTGATA
* * *
289478 AAGATGCCAATATGTTGATTCATGGCCAACGATATTGGACTT----A--AAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
*
289537 GATTCAAGGCCAGCTACATTGGACTTAAAGATG
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
289570 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
289629 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
*
289662 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGTT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
*
289727 GAGTCAAGGCCAACTACATTGGACTTAAAGATG
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
289760 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
*
289825 GAGTCAAGGCTAGCTACATTGGACTTAAAGATG
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
* * * * *
289858 AAGATGCCAATATGCAGATTCAAGGCCAGCGATATTGGACTTAATGGTGAAAGTGCCAATGTGTT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
*
289923 GAGTCAAGGCCAGCTACATTGGACTTAAAGATA
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
* *
289956 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
*
290021 GAGTCAAGGCCAGCTACATTGGACTTAAAGATA
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
* * *
290054 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGGCTTA
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
290097 GAAGGGTTGC
Statistics
Matches: 497, Mismatches: 24, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
92 130 0.26
96 1 0.00
98 366 0.74
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (98 bp):
AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
Found at i:290140 original size:33 final size:33
Alignment explanation
Indices: 290096--290168 Score: 130
Period size: 33 Copynumber: 2.2 Consensus size: 33
290086 TATTGGGCTT
290096 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
*
290129 AGAAGGTTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
290162 A-AAGGGT
1 AGAAGGGT
290169 GAAAGATGCC
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
32 5 0.13
33 33 0.87
ACGTcount: A:0.21, C:0.16, G:0.36, T:0.27
Consensus pattern (33 bp):
AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
Found at i:290280 original size:34 final size:34
Alignment explanation
Indices: 290170--291113 Score: 835
Period size: 34 Copynumber: 28.6 Consensus size: 34
290160 AGAAAGGGTG
* * * *
290170 AAAGA-TGCCACGAAGTTGTGGACTTAAAAAGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
* *
290203 CAA-AGTGCCACGGAGTTGTGGGCTTTAAAAGGGAAA
1 AAAGAGTGCCACGGAGTTGTGGGC-TTAGAA-GG-AA
290239 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
*
290273 AAAGAGTGCCACGAAGTTGTGGGCTTAGAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
290307 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
290341 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
*
290375 AAAGAGTGCCACAGAGTTGTGGGCTTAGAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
290409 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGG-A
1 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
* * *
290442 AAAGTGTGCCACAGAGTTGTGGGCTTTA-AAAGAA
1 AAAGAGTGCCACGGAGTTGTGGGC-TTAGAAGGAA
*
290476 AAAGAATGCCACGGAGTTGTGGGCTTAGAAGG-A
1 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
* *
290509 AAAGAGTGCCACGTAATTGTGGGCTTTA-AAGG-A
1 AAAGAGTGCCACGGAGTTGTGGGC-TTAGAAGGAA
290542 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGG-A
1 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
* *
290575 AAAGAGTGCCACGTAATTGTGGGCTTTA-AAGG-A
1 AAAGAGTGCCACGGAGTTGTGGGC-TTAGAAGGAA
*
290608 AAAGAGTGCCACGGAGTTGTGGGCTTTGAAGG-A
1 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
*
290641 AAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAA
1 AAAGAGTGCCACGGAGTTGTGGGC-TT-AGAA-GGAA
* * * *
290678 AAAGGGTGCCACAGAGTTGTGGGCTTTAAAAAGAA
1 AAAGAGTGCCACGGAGTTGTGGGC-TTAGAAGGAA
* * ** *
290713 AAAGTGTGCCACAGAGTTGTGGGCTTTTAA-AAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
*
290746 AAAG-GTGCCACGGAGTTGTGGGCTTTGAA--AA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
* *
290777 AAAG-GTGCCACGGAGTTGTGGCCTTTGAAAAGGGAA
1 AAAGAGTGCCACGGAGTTGTGGGC-TT-AGAA-GGAA
* *
290813 AAAGAGTGCCACAGAGTTGTGGGCTTTGAA-GAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
* * * * * *
290846 AAA-A-TGTCACTGAGTCGTGGACTTTG-A-GAC
1 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
* * * *
290876 AAA-A-TGCCACTGAGTCGTGGACTTTGAAGG-A
1 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
* * * * *
290907 AAAGA-TGCCACTGAGTCGTGGACTTTG-A-GAC
1 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
* *
290938 AAA-A-TGCCACTGAGTTGTGGACTTTA-AAGG-A
1 AAAGAGTGCCACGGAGTTGTGGGC-TTAGAAGGAA
* * * * *
290969 AAAGA-TGCCACTGAGTCGTGGACTTTG-A-GAC
1 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
* * * *
291000 AAA-A-TGCCACTGAGTCGTGGACTTTGAAGG-A
1 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
* * * * *
291031 AAAGA-TGCCACTGAGTCGTGGACTTTG-A-GAC
1 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
* *
291062 AAA-A-TGCCACTGAGTTGTGGACTTTA-AAGG-A
1 AAAGAGTGCCACGGAGTTGTGGGC-TTAGAAGGAA
* *
291093 AAAGA-TGCCACTGAGTCGTGG
1 AAAGAGTGCCACGGAGTTGTGG
291114 ACTTTGAGAC
Statistics
Matches: 806, Mismatches: 65, Indels: 81
0.85 0.07 0.09
Matches are distributed among these distances:
30 90 0.11
31 76 0.09
32 116 0.14
33 193 0.24
34 212 0.26
35 33 0.04
36 23 0.03
37 63 0.08
ACGTcount: A:0.33, C:0.13, G:0.33, T:0.21
Consensus pattern (34 bp):
AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
Found at i:290325 original size:68 final size:68
Alignment explanation
Indices: 290170--291118 Score: 865
Period size: 62 Copynumber: 14.4 Consensus size: 68
290160 AGAAAGGGTG
* * * * * *
290170 AAAGA-TGCCACGAAGTTGTGGACTTAAAAAGAACAA-AGTGCCACGGAGTTGTGGGCTTTAAAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAGGAAAAAGAGTGCCACGGAGTTGTGGGC-TTAGAA
290233 GGGAAA
65 -GG-AA
*
290239 AAAGAGTGCCACGGAGTTGTGGGC-TTAGAAGGAAAAAGAGTGCCACGAAGTTGTGGGCTTAGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTA-AAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAGAA
290303 GGAA
65 GGAA
290307 AAAGAGTGCCACGGAGTTGTGGGC-TTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTA-AAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAGAA
290371 GGAA
65 GGAA
*
290375 AAAGAGTGCCACAGAGTTGTGGGC-TTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTA-AAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAGAA
290439 GG-A
65 GGAA
* * * *
290442 AAAGTGTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGAATGCCACGGAGTTGTGGGCTTAGAAG
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAGAAG
290507 G-A
66 GAA
* *
290509 AAAGAGTGCCACGTAATTGTGGGCTTTAAAGG-AAAAGAGTGCCACGGAGTTGTGGGCTTAGAAG
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAGAAG
290573 G-A
66 GAA
* * *
290575 AAAGAGTGCCACGTAATTGTGGGCTTTAAAGG-AAAAGAGTGCCACGGAGTTGTGGGCTTTGAAG
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAGAAG
290639 G-A
66 GAA
* *
290641 AAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGGGTGCCACAGAGTTGTGGGCTTTA
1 AAAGAGTGCCACGGAGTTGTGGGCTTT--AAA-GGAAAAAGAGTGCCACGGAGTTGTGGGC-TTA
* *
290706 AAAAGAA
62 GAAGGAA
* * *
290713 AAAGTGTGCCACAGAGTTGTGGGCTTTTAAA--AAAAAG-GTGCCACGGAGTTGTGGGCTTTGAA
1 AAAGAGTGCCACGGAGTTGTGGGC-TTTAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAGAA
290775 --AA
65 GGAA
* * *
290777 AAAG-GTGCCACGGAGTTGTGGCCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTG
1 AAAGAGTGCCACGGAGTTGTGGGCTTT--AAA-GGAAAAAGAGTGCCACGGAGTTGTGGGCTTAG
290841 AA-GAA
63 AAGGAA
* * * * * * * * * *
290846 AAA-A-TGTCACTGAGTCGTGGACTTT-GA-GACAAA-A-TGCCACTGAGTCGTGGACTTTGAAG
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAGAAG
290905 G-A
66 GAA
* * * * * * *
290907 AAAGA-TGCCACTGAGTCGTGGACTTT-GA-GACAAA-A-TGCCACTGAGTTGTGGACTTTA-AA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAGGAAAAAGAGTGCCACGGAGTTGTGGGC-TTAGAA
290966 GG-A
65 GGAA
* * * * * * * * *
290969 AAAGA-TGCCACTGAGTCGTGGACTTT-GA-GACAAA-A-TGCCACTGAGTCGTGGACTTTGAAG
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAGAAG
291029 G-A
66 GAA
* * * * * * *
291031 AAAGA-TGCCACTGAGTCGTGGACTTT-GA-GACAAA-A-TGCCACTGAGTTGTGGACTTTA-AA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAGGAAAAAGAGTGCCACGGAGTTGTGGGC-TTAGAA
291090 GG-A
65 GGAA
* * *
291093 AAAGA-TGCCACTGAGTCGTGGACTTT
1 AAAGAGTGCCACGGAGTTGTGGGCTTT
291119 GAGACAAAAT
Statistics
Matches: 806, Mismatches: 50, Indels: 55
0.88 0.05 0.06
Matches are distributed among these distances:
61 27 0.03
62 197 0.24
63 26 0.03
64 9 0.01
65 1 0.00
66 127 0.16
67 112 0.14
68 187 0.23
69 16 0.02
70 51 0.06
71 27 0.03
72 23 0.03
73 3 0.00
ACGTcount: A:0.33, C:0.13, G:0.33, T:0.21
Consensus pattern (68 bp):
AAAGAGTGCCACGGAGTTGTGGGCTTTAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAGAAG
GAA
Found at i:290923 original size:62 final size:62
Alignment explanation
Indices: 290819--291213 Score: 650
Period size: 62 Copynumber: 6.4 Consensus size: 62
290809 GGAAAAAGAG
* * * * *
290819 TGCCACAGAGTTGTGGGCTTTGAA-GAAAAAATGTCACTGAGTCGTGGACTTTGAGACAAAA
1 TGCCACTGAGTCGTGGACTTTGAAGGAAAAGATGCCACTGAGTCGTGGACTTTGAGACAAAA
290880 TGCCACTGAGTCGTGGACTTTGAAGGAAAAGATGCCACTGAGTCGTGGACTTTGAGACAAAA
1 TGCCACTGAGTCGTGGACTTTGAAGGAAAAGATGCCACTGAGTCGTGGACTTTGAGACAAAA
* *
290942 TGCCACTGAGTTGTGGACTTTAAAGGAAAAGATGCCACTGAGTCGTGGACTTTGAGACAAAA
1 TGCCACTGAGTCGTGGACTTTGAAGGAAAAGATGCCACTGAGTCGTGGACTTTGAGACAAAA
291004 TGCCACTGAGTCGTGGACTTTGAAGGAAAAGATGCCACTGAGTCGTGGACTTTGAGACAAAA
1 TGCCACTGAGTCGTGGACTTTGAAGGAAAAGATGCCACTGAGTCGTGGACTTTGAGACAAAA
* *
291066 TGCCACTGAGTTGTGGACTTTAAAGGAAAAGATGCCACTGAGTCGTGGACTTTGAGACAAAA
1 TGCCACTGAGTCGTGGACTTTGAAGGAAAAGATGCCACTGAGTCGTGGACTTTGAGACAAAA
* *
291128 TGCCACTGAGTCGTGGACTTTAAAGGAAAAGATGCCACTGAGTCGTGGACTTTGAGA-AGAGAT
1 TGCCACTGAGTCGTGGACTTTGAAGGAAAAGATGCCACTGAGTCGTGGACTTTGAGACA-A-AA
*
291191 TGCCACTGAGTCGTGGATTTTGA
1 TGCCACTGAGTCGTGGACTTTGA
291214 GAAGAGATTT
Statistics
Matches: 316, Mismatches: 15, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
61 22 0.07
62 272 0.86
63 22 0.07
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.24
Consensus pattern (62 bp):
TGCCACTGAGTCGTGGACTTTGAAGGAAAAGATGCCACTGAGTCGTGGACTTTGAGACAAAA
Found at i:292165 original size:1 final size:1
Alignment explanation
Indices: 292159--292209 Score: 75
Period size: 1 Copynumber: 51.0 Consensus size: 1
292149 TGTTCTTCTC
* * *
292159 TTTTTTTTTCTTTTTTTTTTTTGTTTTGTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
292210 GGAAAAGAAC
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
1 44 1.00
ACGTcount: A:0.00, C:0.02, G:0.04, T:0.94
Consensus pattern (1 bp):
T
Found at i:292466 original size:16 final size:14
Alignment explanation
Indices: 292459--292527 Score: 77
Period size: 15 Copynumber: 4.7 Consensus size: 14
292449 TTTTTCTGTG
292459 TTTTTTTTTTGTTT
1 TTTTTTTTTTGTTT
292473 TTTTGTTTTTT-TTT
1 TTTT-TTTTTTGTTT
* *
292487 TTTTTTGTGTGTTTT
1 TTTTTTTTTTG-TTT
292502 TTTTTTTGTTTGTTT
1 TTTTTTT-TTTGTTT
292517 GTTTTTTTTTT
1 -TTTTTTTTTT
292528 ATCACCTTTT
Statistics
Matches: 46, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
13 4 0.09
14 11 0.24
15 21 0.46
16 10 0.22
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (14 bp):
TTTTTTTTTTGTTT
Found at i:292482 original size:20 final size:20
Alignment explanation
Indices: 292448--292527 Score: 108
Period size: 20 Copynumber: 3.9 Consensus size: 20
292438 ACTTTGCACT
292448 TTTTTTCTGTGTTTTTTTTTTG
1 TTTTTT-TGT-TTTTTTTTTTG
292470 TTTTTTTGTTTTTTTTTTT-
1 TTTTTTTGTTTTTTTTTTTG
*
292489 TTTTGTGTGTTTTTTTTTTTG
1 TTTT-TTTGTTTTTTTTTTTG
*
292510 TTTGTTTGTTTTTTTTTT
1 TTTTTTTGTTTTTTTTTT
292528 ATCACCTTTT
Statistics
Matches: 53, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.08
20 37 0.70
21 6 0.11
22 6 0.11
ACGTcount: A:0.00, C:0.01, G:0.12, T:0.86
Consensus pattern (20 bp):
TTTTTTTGTTTTTTTTTTTG
Found at i:292501 original size:39 final size:40
Alignment explanation
Indices: 292447--292527 Score: 137
Period size: 40 Copynumber: 2.0 Consensus size: 40
292437 GACTTTGCAC
*
292447 TTTTTTTCTGTG-TTTTTTTTTTGTTTTTTTGTTTTTTTT
1 TTTTTTTCTGTGTTTTTTTTTTTGTTTGTTTGTTTTTTTT
*
292486 TTTTTTTGTGTGTTTTTTTTTTTGTTTGTTTGTTTTTTTT
1 TTTTTTTCTGTGTTTTTTTTTTTGTTTGTTTGTTTTTTTT
292526 TT
1 TT
292528 ATCACCTTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
39 11 0.28
40 28 0.72
ACGTcount: A:0.00, C:0.01, G:0.12, T:0.86
Consensus pattern (40 bp):
TTTTTTTCTGTGTTTTTTTTTTTGTTTGTTTGTTTTTTTT
Found at i:292539 original size:1 final size:1
Alignment explanation
Indices: 292459--292527 Score: 66
Period size: 1 Copynumber: 69.0 Consensus size: 1
292449 TTTTTCTGTG
* * * * * * * *
292459 TTTTTTTTTTGTTTTTTTGTTTTTTTTTTTTTTTGTGTGTTTTTTTTTTTGTTTGTTTGTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
292524 TTTT
1 TTTT
292528 ATCACCTTTT
Statistics
Matches: 52, Mismatches: 16, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
1 52 1.00
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (1 bp):
T
Found at i:299498 original size:52 final size:52
Alignment explanation
Indices: 299428--299548 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
299418 GAAAATTTAT
*
299428 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
*
299480 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
299532 CTGCATGTATCGATACA
1 CTGCATGTATCGATACA
299549 AAGATCAGTG
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
Found at i:299561 original size:52 final size:51
Alignment explanation
Indices: 299428--299568 Score: 212
Period size: 52 Copynumber: 2.7 Consensus size: 51
299418 GAAAATTTAT
299428 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
* *
299480 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
*
299532 CTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 CTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
299569 ATGTATCGAT
Statistics
Matches: 82, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
51 2 0.02
52 80 0.98
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33
Consensus pattern (51 bp):
CTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:299575 original size:13 final size:13
Alignment explanation
Indices: 299557--299581 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
299547 CAAAGATCAG
299557 TGTATCGATACAA
1 TGTATCGATACAA
299570 TGTATCGATACA
1 TGTATCGATACA
299582 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:299664 original size:13 final size:13
Alignment explanation
Indices: 299646--299670 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
299636 ACAAAAAATA
299646 TGTATCGATACAT
1 TGTATCGATACAT
299659 TGTATCGATACA
1 TGTATCGATACA
299671 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:299666 original size:32 final size:33
Alignment explanation
Indices: 299625--299690 Score: 98
Period size: 32 Copynumber: 2.0 Consensus size: 33
299615 AGTAGCTTAA
299625 ATTGTATCGATACAA-AAAATATGTATCGATAC
1 ATTGTATCGATACAACAAAATATGTATCGATAC
***
299657 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAACAAAATATGTATCGATAC
299690 A
1 A
299691 GATCGTTGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 15 0.50
33 15 0.50
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.35
Consensus pattern (33 bp):
ATTGTATCGATACAACAAAATATGTATCGATAC
Found at i:300706 original size:49 final size:49
Alignment explanation
Indices: 300560--300718 Score: 147
Period size: 49 Copynumber: 3.1 Consensus size: 49
300550 AAAAGTGATA
* * * * *
300560 AAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCCTAAAGATGAG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT--G
* ** * * *
300611 AAAAAGGATGTCAACGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATG
1 ---AA-GATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
*
300664 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAAATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
*
300713 ATGATG
1 AAGATG
300719 AGAAGAGTGA
Statistics
Matches: 85, Mismatches: 19, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
49 45 0.53
50 2 0.02
53 1 0.01
54 2 0.02
55 35 0.41
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.25
Consensus pattern (49 bp):
AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
Found at i:300850 original size:49 final size:49
Alignment explanation
Indices: 300731--301349 Score: 771
Period size: 49 Copynumber: 12.9 Consensus size: 49
300721 AAGAGTGATA
* * * *
300731 AAGATGCCAATATGTTGATTCATGGCCAACGATATTGGACTT-AA-A-G
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* *
300777 --G-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
*
300823 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-AA-A-G
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* * *
300869 --G-TGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
*
300915 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* * * * * *
300964 AAGGTGCCAATGTGTTGAGTCAAGGCCAACTACATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
*
301013 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* * * *
301062 AAGGTGCCAATGTGCTGAGTCAAGGCTC-GCTACATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGC-CAGCTATATTGGACTTAAAGATG
* * * *
301111 AAGATGCCAATATGCAGATTCAAGGCCAGCGATATTGGACTTAATGGTG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* * * * *
301160 AA-AGTGCCAATGTGTTGAGTCAAGGCCAGCTACATTGGACTTAAAGATA
1 AAGA-TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
*
301209 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* * * * *
301258 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATA
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* *
301307 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGGCTTA
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTA
301350 GAAGGGTTGC
Statistics
Matches: 490, Mismatches: 67, Indels: 29
0.84 0.11 0.05
Matches are distributed among these distances:
43 66 0.13
44 6 0.01
45 2 0.00
46 3 0.01
47 1 0.00
48 6 0.01
49 405 0.83
50 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (49 bp):
AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
Found at i:300997 original size:98 final size:98
Alignment explanation
Indices: 300731--301349 Score: 976
Period size: 98 Copynumber: 6.4 Consensus size: 98
300721 AAGAGTGATA
* * *
300731 AAGATGCCAATATGTTGATTCATGGCCAACGATATTGGACTT----A--AAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
*
300790 GATTCAAGGCCAGCTACATTGGACTTAAAGATG
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
300823 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
300882 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
*
300915 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGTT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
*
300980 GAGTCAAGGCCAACTACATTGGACTTAAAGATG
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
301013 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
301078 GAGTCAAGGCTC-GCTACATTGGACTTAAAGATG
66 GAGTCAAGGC-CAGCTACATTGGACTTAAAGATG
* * * * *
301111 AAGATGCCAATATGCAGATTCAAGGCCAGCGATATTGGACTTAATGGTGAAAGTGCCAATGTGTT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
*
301176 GAGTCAAGGCCAGCTACATTGGACTTAAAGATA
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
* *
301209 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
*
301274 GAGTCAAGGCCAGCTACATTGGACTTAAAGATA
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
* * *
301307 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGGCTTA
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
301350 GAAGGGTTGC
Statistics
Matches: 497, Mismatches: 22, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
92 130 0.26
96 1 0.00
97 1 0.00
98 364 0.73
99 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (98 bp):
AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
Found at i:301393 original size:33 final size:33
Alignment explanation
Indices: 301349--301421 Score: 130
Period size: 33 Copynumber: 2.2 Consensus size: 33
301339 TATTGGGCTT
301349 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
*
301382 AGAAGGTTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
301415 A-AAGGGT
1 AGAAGGGT
301422 GAAAGATGCC
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
32 5 0.13
33 33 0.87
ACGTcount: A:0.21, C:0.16, G:0.36, T:0.27
Consensus pattern (33 bp):
AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
Found at i:301533 original size:34 final size:34
Alignment explanation
Indices: 301423--302366 Score: 835
Period size: 34 Copynumber: 28.6 Consensus size: 34
301413 AGAAAGGGTG
* * * *
301423 AAAGA-TGCCACGAAGTTGTGGACTTAAAAAGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
* *
301456 CAA-AGTGCCACGGAGTTGTGGGCTTTAAAAGGGAAA
1 AAAGAGTGCCACGGAGTTGTGGGC-TTAGAA-GG-AA
301492 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
*
301526 AAAGAGTGCCACGAAGTTGTGGGCTTAGAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
301560 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
301594 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
*
301628 AAAGAGTGCCACAGAGTTGTGGGCTTAGAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
301662 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGG-A
1 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
* * *
301695 AAAGTGTGCCACAGAGTTGTGGGCTTTA-AAAGAA
1 AAAGAGTGCCACGGAGTTGTGGGC-TTAGAAGGAA
*
301729 AAAGAATGCCACGGAGTTGTGGGCTTAGAAGG-A
1 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
* *
301762 AAAGAGTGCCACGTAATTGTGGGCTTTA-AAGG-A
1 AAAGAGTGCCACGGAGTTGTGGGC-TTAGAAGGAA
301795 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGG-A
1 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
* *
301828 AAAGAGTGCCACGTAATTGTGGGCTTTA-AAGG-A
1 AAAGAGTGCCACGGAGTTGTGGGC-TTAGAAGGAA
*
301861 AAAGAGTGCCACGGAGTTGTGGGCTTTGAAGG-A
1 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
*
301894 AAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAA
1 AAAGAGTGCCACGGAGTTGTGGGC-TT-AGAA-GGAA
* * * *
301931 AAAGGGTGCCACAGAGTTGTGGGCTTTAAAAAGAA
1 AAAGAGTGCCACGGAGTTGTGGGC-TTAGAAGGAA
* * ** *
301966 AAAGTGTGCCACAGAGTTGTGGGCTTTTAA-AAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
*
301999 AAAG-GTGCCACGGAGTTGTGGGCTTTGAA--AA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
* *
302030 AAAG-GTGCCACGGAGTTGTGGCCTTTGAAAAGGGAA
1 AAAGAGTGCCACGGAGTTGTGGGC-TT-AGAA-GGAA
* *
302066 AAAGAGTGCCACAGAGTTGTGGGCTTTGAA-GAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
* * * * * *
302099 AAA-A-TGTCACTGAGTCGTGGACTTTG-A-GAC
1 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
* * * *
302129 AAA-A-TGCCACTGAGTCGTGGACTTTGAAGG-A
1 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
* * * * *
302160 AAAGA-TGCCACTGAGTCGTGGACTTTG-A-GAC
1 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
* *
302191 AAA-A-TGCCACTGAGTTGTGGACTTTA-AAGG-A
1 AAAGAGTGCCACGGAGTTGTGGGC-TTAGAAGGAA
* * * * *
302222 AAAGA-TGCCACTGAGTCGTGGACTTTG-A-GAC
1 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
* * * *
302253 AAA-A-TGCCACTGAGTCGTGGACTTTGAAGG-A
1 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
* * * * *
302284 AAAGA-TGCCACTGAGTCGTGGACTTTG-A-GAC
1 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
* *
302315 AAA-A-TGCCACTGAGTTGTGGACTTTA-AAGG-A
1 AAAGAGTGCCACGGAGTTGTGGGC-TTAGAAGGAA
* *
302346 AAAGA-TGCCACTGAGTCGTGG
1 AAAGAGTGCCACGGAGTTGTGG
302367 ACTTTGAGAC
Statistics
Matches: 806, Mismatches: 65, Indels: 81
0.85 0.07 0.09
Matches are distributed among these distances:
30 90 0.11
31 76 0.09
32 116 0.14
33 193 0.24
34 212 0.26
35 33 0.04
36 23 0.03
37 63 0.08
ACGTcount: A:0.33, C:0.13, G:0.33, T:0.21
Consensus pattern (34 bp):
AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
Found at i:301578 original size:68 final size:68
Alignment explanation
Indices: 301423--302371 Score: 865
Period size: 62 Copynumber: 14.4 Consensus size: 68
301413 AGAAAGGGTG
* * * * * *
301423 AAAGA-TGCCACGAAGTTGTGGACTTAAAAAGAACAA-AGTGCCACGGAGTTGTGGGCTTTAAAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAGGAAAAAGAGTGCCACGGAGTTGTGGGC-TTAGAA
301486 GGGAAA
65 -GG-AA
*
301492 AAAGAGTGCCACGGAGTTGTGGGC-TTAGAAGGAAAAAGAGTGCCACGAAGTTGTGGGCTTAGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTA-AAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAGAA
301556 GGAA
65 GGAA
301560 AAAGAGTGCCACGGAGTTGTGGGC-TTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTA-AAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAGAA
301624 GGAA
65 GGAA
*
301628 AAAGAGTGCCACAGAGTTGTGGGC-TTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTA-AAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAGAA
301692 GG-A
65 GGAA
* * * *
301695 AAAGTGTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGAATGCCACGGAGTTGTGGGCTTAGAAG
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAGAAG
301760 G-A
66 GAA
* *
301762 AAAGAGTGCCACGTAATTGTGGGCTTTAAAGG-AAAAGAGTGCCACGGAGTTGTGGGCTTAGAAG
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAGAAG
301826 G-A
66 GAA
* * *
301828 AAAGAGTGCCACGTAATTGTGGGCTTTAAAGG-AAAAGAGTGCCACGGAGTTGTGGGCTTTGAAG
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAGAAG
301892 G-A
66 GAA
* *
301894 AAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGGGTGCCACAGAGTTGTGGGCTTTA
1 AAAGAGTGCCACGGAGTTGTGGGCTTT--AAA-GGAAAAAGAGTGCCACGGAGTTGTGGGC-TTA
* *
301959 AAAAGAA
62 GAAGGAA
* * *
301966 AAAGTGTGCCACAGAGTTGTGGGCTTTTAAA--AAAAAG-GTGCCACGGAGTTGTGGGCTTTGAA
1 AAAGAGTGCCACGGAGTTGTGGGC-TTTAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAGAA
302028 --AA
65 GGAA
* * *
302030 AAAG-GTGCCACGGAGTTGTGGCCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTG
1 AAAGAGTGCCACGGAGTTGTGGGCTTT--AAA-GGAAAAAGAGTGCCACGGAGTTGTGGGCTTAG
302094 AA-GAA
63 AAGGAA
* * * * * * * * * *
302099 AAA-A-TGTCACTGAGTCGTGGACTTT-GA-GACAAA-A-TGCCACTGAGTCGTGGACTTTGAAG
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAGAAG
302158 G-A
66 GAA
* * * * * * *
302160 AAAGA-TGCCACTGAGTCGTGGACTTT-GA-GACAAA-A-TGCCACTGAGTTGTGGACTTTA-AA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAGGAAAAAGAGTGCCACGGAGTTGTGGGC-TTAGAA
302219 GG-A
65 GGAA
* * * * * * * * *
302222 AAAGA-TGCCACTGAGTCGTGGACTTT-GA-GACAAA-A-TGCCACTGAGTCGTGGACTTTGAAG
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAGAAG
302282 G-A
66 GAA
* * * * * * *
302284 AAAGA-TGCCACTGAGTCGTGGACTTT-GA-GACAAA-A-TGCCACTGAGTTGTGGACTTTA-AA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAGGAAAAAGAGTGCCACGGAGTTGTGGGC-TTAGAA
302343 GG-A
65 GGAA
* * *
302346 AAAGA-TGCCACTGAGTCGTGGACTTT
1 AAAGAGTGCCACGGAGTTGTGGGCTTT
302372 GAGACAAAAT
Statistics
Matches: 806, Mismatches: 50, Indels: 55
0.88 0.05 0.06
Matches are distributed among these distances:
61 27 0.03
62 197 0.24
63 26 0.03
64 9 0.01
65 1 0.00
66 127 0.16
67 112 0.14
68 187 0.23
69 16 0.02
70 51 0.06
71 27 0.03
72 23 0.03
73 3 0.00
ACGTcount: A:0.33, C:0.13, G:0.33, T:0.21
Consensus pattern (68 bp):
AAAGAGTGCCACGGAGTTGTGGGCTTTAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAGAAG
GAA
Found at i:302176 original size:62 final size:62
Alignment explanation
Indices: 302072--302466 Score: 650
Period size: 62 Copynumber: 6.4 Consensus size: 62
302062 GGAAAAAGAG
* * * * *
302072 TGCCACAGAGTTGTGGGCTTTGAA-GAAAAAATGTCACTGAGTCGTGGACTTTGAGACAAAA
1 TGCCACTGAGTCGTGGACTTTGAAGGAAAAGATGCCACTGAGTCGTGGACTTTGAGACAAAA
302133 TGCCACTGAGTCGTGGACTTTGAAGGAAAAGATGCCACTGAGTCGTGGACTTTGAGACAAAA
1 TGCCACTGAGTCGTGGACTTTGAAGGAAAAGATGCCACTGAGTCGTGGACTTTGAGACAAAA
* *
302195 TGCCACTGAGTTGTGGACTTTAAAGGAAAAGATGCCACTGAGTCGTGGACTTTGAGACAAAA
1 TGCCACTGAGTCGTGGACTTTGAAGGAAAAGATGCCACTGAGTCGTGGACTTTGAGACAAAA
302257 TGCCACTGAGTCGTGGACTTTGAAGGAAAAGATGCCACTGAGTCGTGGACTTTGAGACAAAA
1 TGCCACTGAGTCGTGGACTTTGAAGGAAAAGATGCCACTGAGTCGTGGACTTTGAGACAAAA
* *
302319 TGCCACTGAGTTGTGGACTTTAAAGGAAAAGATGCCACTGAGTCGTGGACTTTGAGACAAAA
1 TGCCACTGAGTCGTGGACTTTGAAGGAAAAGATGCCACTGAGTCGTGGACTTTGAGACAAAA
* *
302381 TGCCACTGAGTCGTGGACTTTAAAGGAAAAGATGCCACTGAGTCGTGGACTTTGAGA-AGAGAT
1 TGCCACTGAGTCGTGGACTTTGAAGGAAAAGATGCCACTGAGTCGTGGACTTTGAGACA-A-AA
*
302444 TGCCACTGAGTCGTGGATTTTGA
1 TGCCACTGAGTCGTGGACTTTGA
302467 GAAGAGATTT
Statistics
Matches: 316, Mismatches: 15, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
61 22 0.07
62 272 0.86
63 22 0.07
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.24
Consensus pattern (62 bp):
TGCCACTGAGTCGTGGACTTTGAAGGAAAAGATGCCACTGAGTCGTGGACTTTGAGACAAAA
Found at i:303418 original size:1 final size:1
Alignment explanation
Indices: 303412--303463 Score: 86
Period size: 1 Copynumber: 52.0 Consensus size: 1
303402 TGTTCTTCTC
* *
303412 TTTTTTTTTTTTTTTTTTTTTTTGTTTTGTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
303464 GGAAAAGAAC
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
1 47 1.00
ACGTcount: A:0.00, C:0.00, G:0.04, T:0.96
Consensus pattern (1 bp):
T
Found at i:303720 original size:16 final size:14
Alignment explanation
Indices: 303701--303782 Score: 85
Period size: 14 Copynumber: 5.6 Consensus size: 14
303691 GACTTTGCAC
* *
303701 TTTTTTTCTGTGTT
1 TTTTTTTTTGTTTT
303715 TTTTTTTTTGTTTT
1 TTTTTTTTTGTTTT
303729 TTTGTTTTTT-TTTT
1 TTT-TTTTTTGTTTT
* *
303743 TTTTTGTGTGTTTTT
1 TTTTTTTTTG-TTTT
303758 TTTTTTGTTTGTTTGT
1 TTTTTT-TTTGTTT-T
303774 TTTTTTTTT
1 TTTTTTTTT
303783 ATCACCTTTT
Statistics
Matches: 57, Mismatches: 6, Indels: 9
0.79 0.08 0.12
Matches are distributed among these distances:
13 4 0.07
14 22 0.39
15 21 0.37
16 10 0.18
ACGTcount: A:0.00, C:0.01, G:0.12, T:0.87
Consensus pattern (14 bp):
TTTTTTTTTGTTTT
Found at i:303736 original size:20 final size:20
Alignment explanation
Indices: 303711--303782 Score: 110
Period size: 20 Copynumber: 3.6 Consensus size: 20
303701 TTTTTTTCTG
303711 TGTTTTTTTTTTTGTTTTTT
1 TGTTTTTTTTTTTGTTTTTT
*
303731 TGTTTTTTTTTTT-TTTTGTG
1 TGTTTTTTTTTTTGTTTT-TT
*
303751 TGTTTTTTTTTTTGTTTGTT
1 TGTTTTTTTTTTTGTTTTTT
303771 TGTTTTTTTTTT
1 TGTTTTTTTTTT
303783 ATCACCTTTT
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
19 4 0.09
20 40 0.85
21 3 0.06
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (20 bp):
TGTTTTTTTTTTTGTTTTTT
Done.