genome.fa.s2715.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2715
Parameters: 2 7 7 80 10 50 1000
Length:  29969

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1836--1898	19	3.6	19	70	24	66	36	12	12	38	1.82
1838--1899	32	1.9	32	96	0	115	38	12	11	37	1.80
8542--8583	16	2.6	17	85	11	61	73	7	11	7	1.23
8824--8944	56	2.1	56	89	1	179	42	26	11	19	1.85
9918--10185	34	8.0	32	80	13	292	20	28	11	39	1.88
9917--10185	101	2.7	100	86	8	359	20	28	11	39	1.88
10192--10503	32	9.7	32	82	8	332	29	33	18	18	1.94
10191--10503	96	3.3	95	86	3	414	29	33	18	18	1.95
10564--10809	52	4.8	52	77	5	230	25	21	15	37	1.92
10574--10809	104	2.3	104	81	0	265	25	21	15	37	1.93
10725--10890	87	1.9	87	82	2	208	25	22	18	33	1.97
10919--11129	52	4.1	52	80	4	194	23	24	14	37	1.92
10919--11117	104	1.9	103	82	5	249	23	24	15	37	1.93
11089--11270	61	3.0	60	84	5	217	24	27	12	35	1.91
14335--14444	43	2.5	43	80	11	125	33	20	7	39	1.80
14501--14543	22	2.0	22	100	0	86	27	23	13	34	1.93
14980--15046	37	1.9	35	88	11	102	32	11	25	29	1.92
19521--19580	20	3.0	19	85	7	75	35	13	16	35	1.88
25775--25894	51	2.4	51	81	0	132	31	16	25	25	1.97
26008--26063	28	2.0	28	89	6	87	32	19	28	19	1.97
25826--26139	110	2.9	105	85	6	396	32	17	23	26	1.96
26036--26190	79	2.0	79	81	0	184	33	15	23	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26131--26243	51	2.2	51	84	3	138	36	15	20	28	1.92
28576--28605	13	2.3	13	100	0	60	40	13	16	30	1.87
28587--28641	20	2.8	20	88	0	83	41	14	16	27	1.87
29280--29367	38	2.3	40	78	13	103	39	9	30	20	1.83
29406--29483	41	1.9	41	86	0	111	43	14	20	21	1.87
29570--29679	42	2.6	43	85	7	136	38	11	33	16	1.85
29590--29747	42	3.8	41	74	18	114	35	15	29	19	1.92
29789--29969	45	4.0	46	82	5	226	37	11	30	20	1.87
29789--29943	46	3.5	44	82	3	159	36	12	30	20	1.89

Tables:   1

The End!