genome.fa.s2717.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2717
Parameters: 2 7 7 80 10 50 1000
Length:  89397

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2707--2747	18	2.5	15	85	14	55	19	0	2	78	0.87
3814--4202	51	8.1	49	86	10	476	19	17	4	58	1.55
3858--3947	28	3.4	28	65	16	82	20	17	4	57	1.56
3864--4201	132	2.4	134	87	11	457	19	17	4	58	1.56
3915--4138	41	5.0	41	84	14	270	20	18	4	56	1.59
3996--4201	53	4.0	50	90	6	333	19	16	3	60	1.51
4188--4221	12	2.7	13	90	4	52	14	0	8	76	1.01
4732--5531	42	19.0	42	76	7	645	38	18	28	14	1.90
5434--5562	42	3.0	42	78	5	109	43	17	24	13	1.86
5463--5562	42	2.4	43	79	5	123	45	17	25	13	1.84
7516--7556	20	2.0	20	85	0	55	39	19	12	29	1.88
7568--7592	13	1.9	13	100	0	50	32	16	16	36	1.90
7664--7713	20	2.5	20	90	3	75	38	18	16	28	1.91
14442--14468	13	2.1	13	100	0	54	40	14	14	29	1.86
14512--14563	13	3.5	13	73	26	50	36	17	13	32	1.89
18924--18965	21	2.0	21	86	9	59	30	16	16	35	1.92
22161--22201	20	2.0	20	100	0	82	51	19	9	19	1.74
23012--23055	13	3.4	13	82	17	56	22	0	0	77	0.77
23009--23049	18	2.5	15	85	14	55	21	0	0	78	0.76
24029--24096	33	2.1	33	86	8	95	36	14	14	33	1.87
32031--32114	35	2.4	35	100	0	168	42	2	30	23	1.67
33393--33457	19	3.6	19	66	29	61	46	13	13	26	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35656--35705	21	2.3	21	80	10	57	56	4	18	22	1.58
37504--37534	15	2.1	15	93	0	53	48	16	22	12	1.80
43998--44081	23	3.4	23	69	15	78	17	14	3	64	1.43
43976--44426	51	9.1	51	86	8	666	19	18	4	57	1.56
44021--44109	28	3.4	28	69	15	98	21	16	3	58	1.53
44090--44156	19	3.4	19	67	18	55	23	19	5	50	1.69
44077--44137	21	3.0	21	66	20	56	21	21	4	52	1.65
43975--44412	142	3.0	141	87	9	634	19	18	4	57	1.57
43967--44426	104	4.7	99	86	10	674	18	18	4	58	1.55
44317--44402	28	3.4	28	65	28	82	20	18	3	56	1.55
44123--44417	151	1.9	154	91	5	492	19	19	4	56	1.58
46971--47006	2	19.0	2	88	11	58	52	0	0	47	1.00
46978--47025	10	4.8	10	81	0	51	54	4	0	41	1.20
48976--49010	2	17.5	2	87	0	52	51	2	0	45	1.16
49125--49173	19	2.4	21	83	10	66	34	6	4	55	1.44
49252--49276	2	12.5	2	100	0	50	48	0	0	52	1.00
56652--56760	11	8.7	12	73	19	82	77	0	20	1	0.92
56652--56719	18	3.9	16	79	14	64	80	0	19	0	0.70
56659--56761	4	27.0	4	68	21	53	75	0	21	1	0.95
56653--56761	40	2.9	36	77	18	107	76	0	21	1	0.94
65338--65393	28	2.0	28	89	0	85	30	10	5	53	1.58
66157--66191	16	2.1	18	89	10	56	20	2	5	71	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67544--67578	2	17.5	2	100	0	70	51	0	0	48	1.00
68859--68897	19	2.1	19	85	0	51	87	0	12	0	0.55
70122--70202	15	4.9	16	68	18	51	62	0	0	37	0.95
70126--70209	14	6.5	14	68	21	51	60	0	0	39	0.97
70174--70229	20	3.0	18	78	19	53	53	0	0	46	1.00
77406--77430	2	12.5	2	100	0	50	52	0	0	48	1.00
79038--79073	16	2.2	16	100	0	72	47	25	22	5	1.73
80215--80245	2	15.5	2	100	0	62	51	0	0	48	1.00
86724--86753	15	2.0	15	100	0	60	13	20	20	46	1.83
88022--88052	16	2.0	15	93	6	53	19	0	3	77	0.90
89127--89384	50	5.6	49	83	13	284	20	19	3	55	1.58
89240--89302	20	3.2	19	68	16	56	26	19	1	52	1.55
89227--89349	40	3.0	40	95	2	219	23	19	3	53	1.59
89227--89350	41	3.0	41	96	1	223	23	19	3	54	1.59
89265--89327	20	3.0	22	67	19	62	20	20	4	53	1.63

Tables:   1

The End!