Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold272
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 421410
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
File 1 of 3
Found at i:9393 original size:28 final size:28
Alignment explanation
Indices: 9337--9413 Score: 91
Period size: 28 Copynumber: 2.8 Consensus size: 28
9327 GAAATAAAGC
*** *
9337 CGGGGTTGGAGTATCCCCTCGGAAGTAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
9365 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
** *
9393 CAAGGTTGGAGTATCCTCGAT
1 CGGGGTTGGAGTATCCCCGAT
9414 TGTGAAAAAT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.23
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGATGAAATAA
Found at i:9466 original size:52 final size:52
Alignment explanation
Indices: 9397--9734 Score: 162
Period size: 52 Copynumber: 6.4 Consensus size: 52
9387 AAATAACAAG
*
9397 GTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGA
** * ** * *
9449 GTTGGAGTATCCCCGATTAAAGGAAAATTGG-CGTTTTGAAAATAAAACCAGGA
1 GTTGGAGTATCCCCGATT-GTGAAAAATTGGTATTTTTGGAAATAAAATC-GGA
* * * * *
9502 -TTGGAGTATCCCCGATTGTGGAAAAATTAGTGTTTTAGCG-AA-AAAACCGGG
1 GTTGGAGTATCCCCGATTGT-GAAAAATTGGTATTTTTG-GAAATAAAATCGGA
** **** * * *
9553 GTTGGAGTATCCCC---TCAGAAATAACGGGGTTGG-AGTATCCCCGATGAT-TAA-CGGG
1 GTTGGAGTATCCCCGATTGTGAAA-AA-----TTGGTA-T-TTTTGGA-AATAAAATCGGA
*
9608 GTTGGAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAA-AAATT-G-G-TATTTTTGGAAATAAAATCGGA
* * * * *
9664 GTTAGAGTATCCCCGATTAT-AGAAAATTAGT-GTTTTGAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGA-AAAATTGGTATTTTTGGAAATAAAATCGGA
*
9715 GTTGGAATAT-CCCGATTGTG
1 GTTGGAGTATCCCCGATTGTG
9735 GAGAATTGAT
Statistics
Matches: 212, Mismatches: 45, Indels: 59
0.67 0.14 0.19
Matches are distributed among these distances:
48 4 0.02
49 3 0.01
50 8 0.04
51 28 0.13
52 76 0.36
53 21 0.10
54 8 0.04
55 31 0.15
56 26 0.12
58 6 0.03
59 1 0.00
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.30
Consensus pattern (52 bp):
GTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGA
Found at i:9612 original size:27 final size:28
Alignment explanation
Indices: 9549--9624 Score: 111
Period size: 27 Copynumber: 2.8 Consensus size: 28
9539 GCGAAAAAAC
*
9549 CGGGGTTGGAGTATCCCCTCA-GAAATAA
1 CGGGGTTGGAGTATCCCC-GATGAAATAA
*
9577 CGGGGTTGGAGTATCCCCGATG-ATTAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
9604 CGGGGTTGGAGTATCCCCGAT
1 CGGGGTTGGAGTATCCCCGAT
9625 TGTGAAGAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
27 26 0.58
28 19 0.42
ACGTcount: A:0.22, C:0.21, G:0.33, T:0.24
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGATGAAATAA
Found at i:9678 original size:56 final size:51
Alignment explanation
Indices: 9612--9739 Score: 134
Period size: 51 Copynumber: 2.4 Consensus size: 51
9602 AACGGGGTTG
* *
9612 GAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTTTGGAAATAAAATCGGAGTTA
1 GAGTATCCCCGATTGTG-AGAAATTAGTG----TTTTGAAAATAAAATCGGAGTTA
* *
9668 GAGTATCCCCGATTAT-AGAAAATTAGTGTTTTGAAAATAAAATCGGAGTTG
1 GAGTATCCCCGATTGTGAG-AAATTAGTGTTTTGAAAATAAAATCGGAGTTA
*
9719 GAATAT-CCCGATTGTGGAGAA
1 GAGTATCCCCGATTGT-GAGAA
9740 TTGATAAACT
Statistics
Matches: 63, Mismatches: 6, Indels: 11
0.79 0.08 0.14
Matches are distributed among these distances:
50 8 0.13
51 28 0.44
52 2 0.03
54 2 0.03
55 8 0.13
56 15 0.24
ACGTcount: A:0.34, C:0.10, G:0.24, T:0.32
Consensus pattern (51 bp):
GAGTATCCCCGATTGTGAGAAATTAGTGTTTTGAAAATAAAATCGGAGTTA
Found at i:12111 original size:13 final size:13
Alignment explanation
Indices: 12093--12128 Score: 72
Period size: 13 Copynumber: 2.8 Consensus size: 13
12083 AAGATCCATA
12093 TATCGATACAATG
1 TATCGATACAATG
12106 TATCGATACAATG
1 TATCGATACAATG
12119 TATCGATACA
1 TATCGATACA
12129 CAGAAAAATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.31
Consensus pattern (13 bp):
TATCGATACAATG
Found at i:12139 original size:33 final size:33
Alignment explanation
Indices: 12068--12148 Score: 94
Period size: 33 Copynumber: 2.5 Consensus size: 33
12058 TAAAATTTCC
*
12068 AAATGTATCGATACAAAGATCCATATATCGATA
1 AAATGTATCGATACAAAGATCCATACATCGATA
* * *
12101 CAATGTATCGATACAATGTATCGATACA-CAGA-A
1 AAATGTATCGATACAAAG-ATCCATACATC-GATA
12134 AAATGTATCGATACA
1 AAATGTATCGATACA
12149 TTTCCTTGGC
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
33 32 0.78
34 9 0.22
ACGTcount: A:0.44, C:0.16, G:0.14, T:0.26
Consensus pattern (33 bp):
AAATGTATCGATACAAAGATCCATACATCGATA
Found at i:12192 original size:19 final size:18
Alignment explanation
Indices: 12168--12235 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
12158 CAGTAGCTAA
12168 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
12187 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
12202 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
12219 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
12236 TTGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:12208 original size:13 final size:13
Alignment explanation
Indices: 12190--12214 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
12180 ACAATACTTA
12190 TGTATCGATACAT
1 TGTATCGATACAT
12203 TGTATCGATACA
1 TGTATCGATACA
12215 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:12212 original size:32 final size:32
Alignment explanation
Indices: 12171--12233 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
12161 TAGCTAATTA
*
12171 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
12203 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
12234 AATTGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:12315 original size:21 final size:21
Alignment explanation
Indices: 12291--12347 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
12281 CATTTGTAGG
12291 ATGTATCGATACATTCCACAA
1 ATGTATCGATACATTCCACAA
*
12312 ATGTATCGATACATTCTACAA
1 ATGTATCGATACATTCCACAA
12333 ATGTATCGATACATT
1 ATGTATCGATACATT
12348 TGGGCTTTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (21 bp):
ATGTATCGATACATTCCACAA
Found at i:12389 original size:14 final size:13
Alignment explanation
Indices: 12353--12388 Score: 72
Period size: 13 Copynumber: 2.8 Consensus size: 13
12343 ACATTTGGGC
12353 TTTTTTTTTTCAA
1 TTTTTTTTTTCAA
12366 TTTTTTTTTTCAA
1 TTTTTTTTTTCAA
12379 TTTTTTTTTT
1 TTTTTTTTTT
12389 TTTCAAACAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.11, C:0.06, G:0.00, T:0.83
Consensus pattern (13 bp):
TTTTTTTTTTCAA
Found at i:13001 original size:55 final size:55
Alignment explanation
Indices: 12917--13594 Score: 989
Period size: 55 Copynumber: 12.3 Consensus size: 55
12907 ATAAATTGTA
* * * * *
12917 TCCTGCTCATTGAGGAGT-AAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* * *
12972 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCCACTTGTGTGGGCTTTGAAAAGTG
1 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* * *
13027 TCCTGCTCTTTGGGGAAT-GAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
13082 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
13137 TCCTGCTCTTTGGGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
* * *
13192 TCCTACTCTTTGAGGACTAGAAAATGCCACCAACTTGGGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
13247 TCCTGCTCTTTGGGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
13302 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
13357 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
13412 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
13467 TCCTGCTTTTTGAGAACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
***
13522 TCCTGCTCTTTGAGGACTGGAAGGCGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
13577 TCCTGCTCTTTGAGGACT
1 TCCTGCTCTTTGAGGACT
13595 AAAAAGCGGA
Statistics
Matches: 574, Mismatches: 34, Indels: 30
0.90 0.05 0.05
Matches are distributed among these distances:
54 18 0.03
55 536 0.93
56 20 0.03
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
Found at i:13081 original size:29 final size:28
Alignment explanation
Indices: 13046--13301 Score: 92
Period size: 28 Copynumber: 9.2 Consensus size: 28
13036 TTGGGGAATG
13046 AAAGGTGCCACCAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
** * * * **
13074 AAGAGGTGTCCTGC-TCTT-TGAGGACTGG
1 AA-AGGTG-CCACCAACTTGTGTGGGCTTT
*
13102 AAA-ATGCCACCAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
** * *
13129 GAAAGGTGTCCTGC-TCTT-TG-GGGAC-TG
1 -AAAGGTG-CCACCAACTTGTGTGGG-CTTT
13156 AAAGGTGCCACCAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
* * * **
13184 AAGAGGTGTCCTA-C-TCTT-TGAGGACTAG
1 AA-AGGTG-CC-ACCAACTTGTGTGGGCTTT
* *
13212 AAA-ATGCCACCAACTTGGGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
** * *
13239 GAAAGGTGTCCTGC-TCTT-TG-GGGAC-TG
1 -AAAGGTG-CCACCAACTTGTGTGGG-CTTT
13266 AAAGGTGCCACCAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
13294 AAGAGGTG
1 AA-AGGTG
13302 TCCTGCTCTT
Statistics
Matches: 155, Mismatches: 46, Indels: 53
0.61 0.18 0.21
Matches are distributed among these distances:
24 1 0.01
25 12 0.08
26 30 0.19
27 27 0.17
28 41 0.26
29 31 0.20
30 12 0.08
31 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.31, T:0.28
Consensus pattern (28 bp):
AAAGGTGCCACCAACTTGTGTGGGCTTT
Found at i:13379 original size:27 final size:27
Alignment explanation
Indices: 13239--13379 Score: 65
Period size: 28 Copynumber: 5.1 Consensus size: 27
13229 GGTGGGCTTT
*
13239 GAAAGGTGTCCTGCTCTTTGGGGACT-
1 GAAAGGTGTCCTGCTCTTTGAGGACTG
** * * * *
13265 GAAAGGTG-CCACCAACTTGTGTGGGCTT
1 GAAAGGTGTCCTGC-TCTT-TGAGGACTG
*
13293 TAAGAGGTGTCCTGCTCTTTGAGGACTG
1 GAA-AGGTGTCCTGCTCTTTGAGGACTG
* ** * * * *
13321 GAAA-ATG-CCACCAACTTGTGTGGGCTTT
1 GAAAGGTGTCCTGC-TCTT-TGAGGAC-TG
13349 GAAAGGTGTCCTGCTCTTTGAGGACTG
1 GAAAGGTGTCCTGCTCTTTGAGGACTG
13376 GAAA
1 GAAA
13380 ATGCCACCAA
Statistics
Matches: 78, Mismatches: 27, Indels: 19
0.63 0.22 0.15
Matches are distributed among these distances:
25 6 0.08
26 16 0.21
27 17 0.22
28 20 0.26
29 13 0.17
30 6 0.08
ACGTcount: A:0.21, C:0.19, G:0.31, T:0.28
Consensus pattern (27 bp):
GAAAGGTGTCCTGCTCTTTGAGGACTG
Found at i:14604 original size:25 final size:25
Alignment explanation
Indices: 14576--14623 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
14566 CTTTTCTCTC
*
14576 TTTTTCTTTGTTTTGTTTTTTTGTT
1 TTTTTCTTTCTTTTGTTTTTTTGTT
* *
14601 TTTTTTTTTCTTTTTTTTTTTTG
1 TTTTTCTTTCTTTTGTTTTTTTG
14624 AAGAGAAGGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.00, C:0.04, G:0.08, T:0.88
Consensus pattern (25 bp):
TTTTTCTTTCTTTTGTTTTTTTGTT
Found at i:14608 original size:12 final size:12
Alignment explanation
Indices: 14576--14621 Score: 65
Period size: 12 Copynumber: 3.8 Consensus size: 12
14566 CTTTTCTCTC
*
14576 TTTTTCTTTGTT
1 TTTTTTTTTGTT
14588 TTGTTTTTTTGTT
1 TT-TTTTTTTGTT
*
14601 TTTTTTTTTCTT
1 TTTTTTTTTGTT
14613 TTTTTTTTT
1 TTTTTTTTT
14622 TGAAGAGAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
12 20 0.65
13 11 0.35
ACGTcount: A:0.00, C:0.04, G:0.07, T:0.89
Consensus pattern (12 bp):
TTTTTTTTTGTT
Found at i:21172 original size:8 final size:8
Alignment explanation
Indices: 21158--21229 Score: 51
Period size: 8 Copynumber: 8.8 Consensus size: 8
21148 TTCTCTTAAA
21158 AAAAAAAG
1 AAAAAAAG
21166 CAAAAAAA-
1 -AAAAAAAG
*
21174 AAAAAAGG
1 AAAAAAAG
21182 AAAAAAA-
1 AAAAAAAG
21189 ACAAAAAA-
1 A-AAAAAAG
*
21197 AAAAAAACA
1 AAAAAAA-G
21206 AAGAAAAAG
1 AA-AAAAAG
*
21215 AGAGAAAAG
1 A-AAAAAAG
21224 AAAAAA
1 AAAAAA
21230 CCTACTTAAG
Statistics
Matches: 52, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
7 13 0.25
8 17 0.33
9 16 0.31
10 6 0.12
ACGTcount: A:0.85, C:0.04, G:0.11, T:0.00
Consensus pattern (8 bp):
AAAAAAAG
Found at i:21175 original size:15 final size:14
Alignment explanation
Indices: 21155--21229 Score: 80
Period size: 15 Copynumber: 5.2 Consensus size: 14
21145 ACCTTCTCTT
21155 AAAAAAAAAAGCAAA
1 AAAAAAAAAAG-AAA
21170 AAAAAAAAAAGGAAA
1 AAAAAAAAAA-GAAA
*
21185 AAAAACAAAA-AAA
1 AAAAAAAAAAGAAA
*
21198 AAAAAACAAAGAAA
1 AAAAAAAAAAGAAA
* *
21212 AAGAGAGAAAAGAAA
1 AA-AAAAAAAAGAAA
21227 AAA
1 AAA
21230 CCTACTTAAG
Statistics
Matches: 51, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
13 11 0.22
14 6 0.12
15 33 0.65
16 1 0.02
ACGTcount: A:0.85, C:0.04, G:0.11, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAAGAAA
Found at i:21193 original size:24 final size:25
Alignment explanation
Indices: 21157--21203 Score: 87
Period size: 24 Copynumber: 1.9 Consensus size: 25
21147 CTTCTCTTAA
21157 AAAAAAAAGCAAAAAAAAAAAAAGG
1 AAAAAAAAGCAAAAAAAAAAAAAGG
21182 AAAAAAAA-CAAAAAAAAAAAAA
1 AAAAAAAAGCAAAAAAAAAAAAA
21204 CAAAGAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 14 0.64
25 8 0.36
ACGTcount: A:0.89, C:0.04, G:0.06, T:0.00
Consensus pattern (25 bp):
AAAAAAAAGCAAAAAAAAAAAAAGG
Found at i:21212 original size:24 final size:25
Alignment explanation
Indices: 21157--21214 Score: 84
Period size: 24 Copynumber: 2.4 Consensus size: 25
21147 CTTCTCTTAA
*
21157 AAAAAAAAGCAAAAAAAAAAAAAGG
1 AAAAAAAAGCAAAAAAAAAAAAAGC
21182 AAAAAAAA-CAAAAAAAAAAAAA-C
1 AAAAAAAAGCAAAAAAAAAAAAAGC
21205 AAAGAAAAAG
1 AAA-AAAAAG
21215 AGAGAAAAGA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
23 3 0.10
24 19 0.63
25 8 0.27
ACGTcount: A:0.86, C:0.05, G:0.09, T:0.00
Consensus pattern (25 bp):
AAAAAAAAGCAAAAAAAAAAAAAGC
Found at i:21229 original size:1 final size:1
Alignment explanation
Indices: 21155--21213 Score: 55
Period size: 1 Copynumber: 59.0 Consensus size: 1
21145 ACCTTCTCTT
** ** * * *
21155 AAAAAAAAAAGCAAAAAAAAAAAAAGGAAAAAAAACAAAAAAAAAAAAACAAAGAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
21214 GAGAGAAAAG
Statistics
Matches: 47, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
1 47 1.00
ACGTcount: A:0.88, C:0.05, G:0.07, T:0.00
Consensus pattern (1 bp):
A
Found at i:22274 original size:55 final size:55
Alignment explanation
Indices: 22191--22634 Score: 619
Period size: 55 Copynumber: 8.0 Consensus size: 55
22181 CTCCATCCGC
*
22191 TTTT-CAGTCCCCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
1 TTTTCCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
22245 TTTTCCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
1 TTTTCCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
* * * *
22300 TTTTCTAGTCCTCAGAGAGCAGGACACCTCTT-AAAGCCCACACGAGTTGGTGGCG
1 TTTTCCAGTCCTCAAAGAGCAGGACACCT-TTCAAAGCCCACACAAGTTGGTGGCA
**
22355 CCTTCCAGTCCTCAAAGAGCAGGACACCTCTT-AAAGCCCACACAAGTTGGTGGCA
1 TTTTCCAGTCCTCAAAGAGCAGGACACCT-TTCAAAGCCCACACAAGTTGGTGGCA
* * *
22410 TTTTCCAATCCTCAAAGAGCAGGACACCTTTTAAAGCCCACACAGGTTGGTGGCA
1 TTTTCCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
22465 TTTTTCAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCA
1 TTTTCCAGTCCTCAAAGAGCAGGA--C----ACCTTTCAAAGCCCACACAAGTTGGTGGCA
* *
22526 CCTTT-CAGTCCTCAAAGAGCAAGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
1 -TTTTCCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
* *
22581 -TTTCCAGTCCTCAAAGAGCAGGACACCTTTTAAAGCCCACACAAGTTAGTGGCA
1 TTTTCCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
22635 AACCTTCCCA
Statistics
Matches: 351, Mismatches: 28, Indels: 22
0.88 0.07 0.05
Matches are distributed among these distances:
53 3 0.01
54 53 0.15
55 244 0.70
56 2 0.01
57 1 0.00
59 1 0.00
61 44 0.13
62 3 0.01
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (55 bp):
TTTTCCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
Found at i:23215 original size:19 final size:19
Alignment explanation
Indices: 23191--23258 Score: 85
Period size: 19 Copynumber: 3.9 Consensus size: 19
23181 AATTCAACGA
23191 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
23210 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
23225 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
23242 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
23259 TTAGCTACTG
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 2 0.05
19 28 0.65
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:23229 original size:32 final size:32
Alignment explanation
Indices: 23193--23255 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
23183 TTCAACGATT
*
23193 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
23225 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
23256 TAATTAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:23230 original size:13 final size:13
Alignment explanation
Indices: 23212--23236 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23202 ACATAAGTTT
23212 TGTATCGATACAA
1 TGTATCGATACAA
23225 TGTATCGATACA
1 TGTATCGATACA
23237 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:23316 original size:13 final size:13
Alignment explanation
Indices: 23298--23323 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
23288 CATTTTTCTG
23298 TGTATCGATACAT
1 TGTATCGATACAT
23311 TGTATCGATACAT
1 TGTATCGATACAT
23324 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:23320 original size:33 final size:33
Alignment explanation
Indices: 23278--23344 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
23268 GCCAAGGAAA
***
23278 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
23311 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
23344 T
1 T
23345 TGGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:25740 original size:51 final size:53
Alignment explanation
Indices: 25676--26017 Score: 192
Period size: 52 Copynumber: 6.5 Consensus size: 53
25666 AGTTTATCAA
* * * *
25676 TTCTCCACAATCGGGGATATTCCAACTCCGATTTTATTTTC-AAAACACTAA-
1 TTCTTCACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAAT
* * *
25727 TT-TTCTATAATCGGGGATACTCTAACTTCGATTTTATTTCCAAAAAACACCAAT
1 TTCTTC-ACAATCGGGGATACTCCAACTCCGATTTTATTTCC-AAAAACACCAAT
* * * *** * * *
25781 TTCTTCACAATCGGGGATACTCCAACCCCG--TTAATCATCGGGGATACTCCAAC
1 TTCTTCACAATCGGGGATACTCCAACTCCGATTTTAT-TTC-CAAAAACACCAAT
** ** * * *
25834 CCCGTT-A-TTTCTGAGGGGATACTCCAACTCCGGTTTTA--TCGCTAAAACACTAAT
1 TTC-TTCACAATC---GGGGATACTCCAACTCCGATTTTATTTC-CAAAAACACCAAT
* * *
25888 TT-TTCCACAATCGGGGATACTCCAA-TCCTGGTTTTATTTTC-AAAACGCCAATT
1 TTCTT-CACAATCGGGGATACTCCAACTCC-GATTTTATTTCCAAAAACACCAA-T
* * *
25941 TTCCTT--TAATCGGGGATACTCCAACTCCGATTTTATTTTCAAAAATACCAAT
1 TT-CTTCACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAAT
*
25993 TTC-TCACAATCGAGGATACTCCAAC
1 TTCTTCACAATCGGGGATACTCCAAC
26018 CTCGTTATTT
Statistics
Matches: 220, Mismatches: 45, Indels: 51
0.70 0.14 0.16
Matches are distributed among these distances:
50 3 0.01
51 36 0.16
52 84 0.38
53 35 0.16
54 35 0.16
55 24 0.11
57 3 0.01
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.32
Consensus pattern (53 bp):
TTCTTCACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAAT
Found at i:25860 original size:28 final size:27
Alignment explanation
Indices: 25793--25861 Score: 95
Period size: 27 Copynumber: 2.5 Consensus size: 27
25783 CTTCACAATC
*
25793 GGGGATACTCCAACCCCGTTAATCATC
1 GGGGATACTCCAACCCCGTTAATCATA
*
25820 GGGGATACTCCAACCCCGTTATTTC-TGA
1 GGGGATACTCCAACCCCGTTA-ATCAT-A
25848 GGGGATACTCCAAC
1 GGGGATACTCCAAC
25862 TCCGGTTTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (27 bp):
GGGGATACTCCAACCCCGTTAATCATA
Found at i:25900 original size:107 final size:105
Alignment explanation
Indices: 25739--26131 Score: 314
Period size: 107 Copynumber: 3.7 Consensus size: 105
25729 TTCTATAATC
* * *
25739 GGGGATACTCTAACTTCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGGGGATACTCC
1 GGGGATACTCCAACTCCGGTTTTA-TTCC-AAAAACACCAATTTC-TCACAATCGGGGATACTCC
25804 AACCCCGTTAATCATCGGGGATACTCCAACCCCGTTATTTCTGA
63 AACCCCGTTAATCATCGGGGATACTCCAACCCCGTTATTTC-GA
* * *
25848 GGGGATACTCCAACTCCGGTTTTA-TCGCTAAAACACTAATTTTTCCACAATCGGGGATACTCCA
1 GGGGATACTCCAACTCCGGTTTTATTC-CAAAAACACCAATTTCT-CACAATCGGGGATACTCCA
** * ** * * * ** * *
25912 ATCCTGGTTTTATTTTC---AAAACGCCAATTTTCCTTTA-ATC--
64 A-CCCCG-TTAATCATCGGGGATACTCCAA--CCCCGTTATTTCGA
* * * *
25952 GGGGATACTCCAACTCCGATTTTATTTTCAAAAATACCAATTTCTCACAATCGAGGATACTCCAA
1 GGGGATACTCCAACTCCGGTTTTA-TTCCAAAAACACCAATTTCTCACAATCGGGGATACTCCAA
* * *
26017 CCTCGTTATTTCCTCGGGGATACTCCAACCCCGTTACTTTCGA
65 CCCCGTTA-ATCATCGGGGATACTCCAACCCCGTTA-TTTCGA
* * * * *** * *
26060 GGGGATACTCCAACCCCGGCTTTATTCCCAAAATATTGATTTCTCATAATTGGGGATACTCCAAC
1 GGGGATACTCCAACTCCGGTTTTATTCCAAAAACACCAATTTCTCACAATCGGGGATACTCCAAC
26125 CCCGTTA
66 CCCGTTA
26132 TTTTCGAAGG
Statistics
Matches: 219, Mismatches: 49, Indels: 34
0.73 0.16 0.11
Matches are distributed among these distances:
102 2 0.01
103 7 0.03
104 47 0.21
105 13 0.06
106 18 0.08
107 75 0.34
108 30 0.14
109 27 0.12
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (105 bp):
GGGGATACTCCAACTCCGGTTTTATTCCAAAAACACCAATTTCTCACAATCGGGGATACTCCAAC
CCCGTTAATCATCGGGGATACTCCAACCCCGTTATTTCGA
Found at i:26001 original size:104 final size:104
Alignment explanation
Indices: 25676--26016 Score: 291
Period size: 104 Copynumber: 3.2 Consensus size: 104
25666 AGTTTATCAA
* * * *
25676 TTCTCCACAATCGGGGATATTCCAACTCCGATTTTATTTTCAAAACACTAATTTT-CTATAATCG
1 TTCTCCACAATCGGGGATACTCCAA-TCCGGTTTTATTTTCAAAACACCAATTTTCCTTTAATCG
* *
25740 GGGATACTCTAACTTCGATTTTATTTCCAAAAAACACCAAT
65 GGGATACTCCAACTCCGATTTTATTTCC-AAAAACACCAAT
* * * * ** * * * ** * *
25781 TTCTTCACAATCGGGGATACTCCAACCCCG-TTAATCATCGGGGATACTCCAA--CCCCGTTATT
1 TTCTCCACAATCGGGGATACTCCAATCCGGTTTTATTTTC---AAAACACCAATTTTCCTTTA-A
* * *
25843 TCTGAGGGGATACTCCAACTCCGGTTTTA--TCGCTAAAACACTAAT
62 TC---GGGGATACTCCAACTCCGATTTTATTTC-CAAAAACACCAAT
* *
25888 TTTTCCACAATCGGGGATACTCCAATCCTGGTTTTATTTTCAAAACGCCAATTTTCCTTTAATCG
1 TTCTCCACAATCGGGGATACTCCAATCC-GGTTTTATTTTCAAAACACCAATTTTCCTTTAATCG
* *
25953 GGGATACTCCAACTCCGATTTTATTTTCAAAAATACCAAT
65 GGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAAT
*
25993 TTCT-CACAATCGAGGATACTCCAA
1 TTCTCCACAATCGGGGATACTCCAA
26017 CCTCGTTATT
Statistics
Matches: 178, Mismatches: 43, Indels: 31
0.71 0.17 0.12
Matches are distributed among these distances:
103 6 0.03
104 44 0.25
105 39 0.22
106 16 0.09
107 39 0.22
108 7 0.04
109 27 0.15
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.33
Consensus pattern (104 bp):
TTCTCCACAATCGGGGATACTCCAATCCGGTTTTATTTTCAAAACACCAATTTTCCTTTAATCGG
GGATACTCCAACTCCGATTTTATTTCCAAAAACACCAAT
Found at i:26038 original size:28 final size:28
Alignment explanation
Indices: 26006--26077 Score: 101
Period size: 28 Copynumber: 2.6 Consensus size: 28
25996 TCACAATCGA
* **
26006 GGATACTCCAACCTCGTTA-TTTCCTCGG
1 GGATACTCCAACCCCGTTACTTT-CGAGG
26034 GGATACTCCAACCCCGTTACTTTCGAGG
1 GGATACTCCAACCCCGTTACTTTCGAGG
26062 GGATACTCCAACCCCG
1 GGATACTCCAACCCCG
26078 GCTTTATTCC
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 37 0.93
29 3 0.08
ACGTcount: A:0.21, C:0.35, G:0.19, T:0.25
Consensus pattern (28 bp):
GGATACTCCAACCCCGTTACTTTCGAGG
Found at i:26046 original size:212 final size:212
Alignment explanation
Indices: 25679--26084 Score: 613
Period size: 212 Copynumber: 1.9 Consensus size: 212
25669 TTATCAATTC
* *
25679 TCCACAATCGGGGATATTCCAACTCCGATTTTATTTTCAAAACACTAATTTTCTATAATCGGGGA
1 TCCACAATCGGGGATACTCCAACTCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGA
* * *
25744 TACTCTAACTTCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGGGGATACTCCAACCC
66 TACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACCC
* *
25809 CGTTAATCATCGGGGATACTCCAACCCCGTTA-TTTCTGAGGGGATACTCCAACTCCGGTTTTAT
131 CGTTAATCATCGGGGATACTCCAACCCCGTTACTTTC-GAGGGGATACTCCAACCCCGGCTTTAT
25873 CGCTAAAACACTAATTTT
195 CGCTAAAACACTAATTTT
* * *
25891 TCCACAATCGGGGATACTCCAA-TCCTGGTTTTATTTTCAAAACGCCAATTTTCCTTTAATCGGG
1 TCCACAATCGGGGATACTCCAACTCC-GATTTTATTTTCAAAACACCAATTTT-CTATAATCGGG
* *
25955 GATACTCCAACTCCGATTTTATTTTC-AAAAATACCAATTTC-TCACAATCGAGGATACTCCAAC
64 GATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAAC
* * *
26018 CTCGTTATTTCCTCGGGGATACTCCAACCCCGTTACTTTCGAGGGGATACTCCAACCCCGGCTTT
129 CCCGTTA-ATCATCGGGGATACTCCAACCCCGTTACTTTCGAGGGGATACTCCAACCCCGGCTTT
26083 AT
193 AT
26085 TCCCAAAATA
Statistics
Matches: 175, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
211 30 0.17
212 108 0.62
213 37 0.21
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (212 bp):
TCCACAATCGGGGATACTCCAACTCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGA
TACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACCC
CGTTAATCATCGGGGATACTCCAACCCCGTTACTTTCGAGGGGATACTCCAACCCCGGCTTTATC
GCTAAAACACTAATTTT
Found at i:26210 original size:80 final size:79
Alignment explanation
Indices: 26031--26234 Score: 232
Period size: 80 Copynumber: 2.6 Consensus size: 79
26021 GTTATTTCCT
* *
26031 CGGGGATACTCCAACCCCGTTACTTTCGAGGGGATACTCCAACCCCGGCTTTATTCCCAAAATAT
1 CGGGGATACTCCAACCCCGTTATTTTCGAAGGGATACTCCAACCCCGGCTTTATTCCCAAAATAT
* * *
26096 TGATTTCTCATAAT
66 CGATTTCTCACAAC
* * ** * ** *
26110 TGGGGATACTCCAACCCCGTTATTTTCGAAGGGATACTCCAATCCCGATTTTTTTTTTC-TAATC
1 CGGGGATACTCCAACCCCGTTATTTTCGAAGGGATACTCCAACCCCG-GCTTTATTCCCAAAAT-
26174 ATCGATTTCTCACAAC
64 ATCGATTTCTCACAAC
* *
26190 CGGGGATACTCCAGCCCCGTTATTTTC-AAGGGAACACTCCAACCC
1 CGGGGATACTCCAACCCCGTTATTTTCGAAGGG-ATACTCCAACCC
26235 TGTTATTATC
Statistics
Matches: 105, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
79 51 0.49
80 54 0.51
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (79 bp):
CGGGGATACTCCAACCCCGTTATTTTCGAAGGGATACTCCAACCCCGGCTTTATTCCCAAAATAT
CGATTTCTCACAAC
Found at i:26262 original size:80 final size:76
Alignment explanation
Indices: 26031--26265 Score: 218
Period size: 80 Copynumber: 2.9 Consensus size: 76
26021 GTTATTTCCT
* * * *
26031 CGGGGATACTCCAACCCCGTTACTTTCGAGGGGATACTCCAACCCCGGCTTTATTCCCAAAATAT
1 CGGGGATACTCCAACCCCGTTATTTTC-AAGGGATACTCCAACCCC-GTTTTATT-CCAAAACAT
* *
26096 TGATTTCTCATAAT
63 TGATTTCTCACAAC
* * * * * *
26110 TGGGGATACTCCAACCCCGTTATTTTCGAAGGGATACTCCAATCCCGATTTTTTTTTTCTAATCA
1 CGGGGATACTCCAACCCCGTTATTTTC-AAGGGATACTCCAACCCCG---TTTTATTCCAAAACA
*
26175 TCGATTTCTCACAAC
62 TTGATTTCTCACAAC
* * *
26190 CGGGGATACTCCAGCCCCGTTATTTTCAAGGGAACACTCCAACCCTGTTATTATCTCCAAAACAT
1 CGGGGATACTCCAACCCCGTTATTTTCAAGGG-ATACTCCAACCCCGTT-TTAT-TCCAAAACAT
*
26255 TAAATTTCTCA
63 T-GATTTCTCA
26266 TCGGGAAATA
Statistics
Matches: 125, Mismatches: 24, Indels: 13
0.77 0.15 0.08
Matches are distributed among these distances:
77 2 0.02
78 4 0.03
79 54 0.43
80 60 0.48
81 5 0.04
ACGTcount: A:0.26, C:0.28, G:0.14, T:0.31
Consensus pattern (76 bp):
CGGGGATACTCCAACCCCGTTATTTTCAAGGGATACTCCAACCCCGTTTTATTCCAAAACATTGA
TTTCTCACAAC
Found at i:29120 original size:19 final size:20
Alignment explanation
Indices: 29092--29138 Score: 87
Period size: 19 Copynumber: 2.4 Consensus size: 20
29082 GTTGCTATGC
29092 ATCGATACTTTTCATAATGT
1 ATCGATACTTTTCATAATGT
29112 ATC-ATACTTTTCATAATGT
1 ATCGATACTTTTCATAATGT
29131 ATCGATAC
1 ATCGATAC
29139 ATTGCTTTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 19 0.73
20 7 0.27
ACGTcount: A:0.32, C:0.17, G:0.09, T:0.43
Consensus pattern (20 bp):
ATCGATACTTTTCATAATGT
Found at i:29285 original size:19 final size:20
Alignment explanation
Indices: 29240--29286 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
29230 CTGCCAGTTT
29240 CATGTATCGATAAAATTAAG
1 CATGTATCGATAAAATTAAG
* * *
29260 TATGTATTGATAAAA-TGAG
1 CATGTATCGATAAAATTAAG
29279 CATGTATC
1 CATGTATC
29287 CATACAATGT
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
19 9 0.41
20 13 0.59
ACGTcount: A:0.40, C:0.09, G:0.17, T:0.34
Consensus pattern (20 bp):
CATGTATCGATAAAATTAAG
Found at i:30763 original size:154 final size:155
Alignment explanation
Indices: 30314--31005 Score: 640
Period size: 154 Copynumber: 4.5 Consensus size: 155
30304 TAAGTTTAAG
* * * *
30314 AAATTA-TGAAAATACCTCTAGGGGATAAC-TTCGACGTAAAAGTACCCAATACCCCTAAAGGAC
1 AAATTACT-AAAATGCCCCTAGGGGAT-ACTTTCGACGTAAAAGTACCCAGTACCTCTAAAGGAC
* * * * * * *
30377 TTAAAAAAGATTATAGATGAGATGAACCTATCCTAAAGACCCACCTTCGACATAAAAGCGTACTC
64 TTAAAAAGGATTATAAAAGGGATGAACCTATCCTAAATACCCACCTTCGACATAAAAGCGGACCC
*
30442 GATGACAACCTAAGACTCGGTTCTAAA
129 GATGACAACCTAGGACTCGGTTCTAAA
* * * * * *
30469 AAATTACTAAAATACCCCT-GAGGGATA-TTTTGTCGTAGAAGTGCCCGAG-ATCC-ATAAAGGA
1 AAATTACTAAAATGCCCCTAG-GGGATACTTTCGACGTAAAAGTACCC-AGTA-CCTCTAAAGGA
* * * * *
30530 CTTAAAAAGGATTACAAAATGGGATGAACCTATCCTTAATACACACCATC-AGCATTAAAGCGGA
63 CTTAAAAAGGATTATAAAA-GGGATGAACCTATCCTAAATACCCACCTTCGA-CATAAAAGCGGA
* * *
30594 CCCGATTACAACCTAGGACTTGGTTCTATA
126 CCCGATGACAACCTAGGACTCGGTTCTAAA
* * * * * *
30624 CAATTACAAAAATGCCCTTAGGGGATACCTGT-GACATAAAAGTACCCAGCACCTCTAAAGGAC-
1 AAATTACTAAAATGCCCCTAGGGGATA-CTTTCGACGTAAAAGTACCCAGTACCTCTAAAGGACT
* * * * *
30687 TAAAAAGGGTCATAGAAA-GGATGAACCTATCCTAAATACCCACCTTCGACGTGAAAGCGGACTC
65 TAAAAAGGATTATA-AAAGGGATGAACCTATCCTAAATACCCACCTTCGACATAAAAGCGGACCC
*
30751 -AGTGACAACCTAGGACTCGGTTCTAGA
129 GA-TGACAACCTAGGACTCGGTTCTAAA
* ** **
30778 AAATTACGAAAATGCCTTTAGGGGATACTTTCGACGTAAAAGTA-CTTGATACCTCTAAAGGACT
1 AAATTACTAAAATGCCCCTAGGGGATACTTTCGACGTAAAAGTACCCAG-TACCTCTAAAGGACT
* * * * * * * *
30842 TAAAAAGGATTTTAAAAGGGAT-AACATATCGTAAATATCTACCTTCGGCAAAAAAGCAGACCCG
65 TAAAAAGGATTATAAAAGGGATGAACCTATCCTAAATACCCACCTTCGACATAAAAGCGGACCCG
* *
30906 ATAACAACCTAGGACTTGGTTCTAAA
130 ATGACAACCTAGGACTCGGTTCTAAA
* * * * * *
30932 AAATTACTAGAATGCCCCTAGGGGATACCTTCGACGTAGAAGTGCCCAATACC-CGTAAA-AACT
1 AAATTACTAAAATGCCCCTAGGGGATACTTTCGACGTAAAAGTACCCAGTACCTC-TAAAGGACT
30995 TAAAAAGGATT
65 TAAAAAGGATT
31006 TATAGATGTG
Statistics
Matches: 435, Mismatches: 80, Indels: 46
0.78 0.14 0.08
Matches are distributed among these distances:
153 21 0.05
154 249 0.57
155 138 0.32
156 25 0.06
157 2 0.00
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.23
Consensus pattern (155 bp):
AAATTACTAAAATGCCCCTAGGGGATACTTTCGACGTAAAAGTACCCAGTACCTCTAAAGGACTT
AAAAAGGATTATAAAAGGGATGAACCTATCCTAAATACCCACCTTCGACATAAAAGCGGACCCGA
TGACAACCTAGGACTCGGTTCTAAA
Found at i:33040 original size:42 final size:42
Alignment explanation
Indices: 32989--33379 Score: 197
Period size: 42 Copynumber: 9.3 Consensus size: 42
32979 AGCCAAAGAG
* *
32989 AAAGAAGTCTCCCAGGTCTAAGTCGACGAGTAGACAAAGGAT
1 AAAGAAGTCTCCCAGGTCAAAGTCGACGAGCAGACAAAGGAT
* * *
33031 AAAGTAGTCTCCCAGGTCAAAGTCGACGGGCAGACAAAGGGT
1 AAAGAAGTCTCCCAGGTCAAAGTCGACGAGCAGACAAAGGAT
* * ** * **
33073 GAAGAAATCTCCTGGGTCAAAGCCGACCTGCAGACAAAAGG-T
1 AAAGAAGTCTCCCAGGTCAAAGTCGACGAGCAGAC-AAAGGAT
* * * * * * *
33115 GAAGGAGTCTCCCAGGTCAAAGTCGGCGGGCAAACAGAGGGT
1 AAAGAAGTCTCCCAGGTCAAAGTCGACGAGCAGACAAAGGAT
* * * * * *
33157 GAAGGAGTCTCCTAGGTCAAAGTCGA-TAGGCAGACAGAGGGT
1 AAAGAAGTCTCCCAGGTCAAAGTCGACGA-GCAGACAAAGGAT
* * **** * *
33199 GAAGGAGTCTTTTGGGTCAAAG-CTGA-TAGGCAGATAAAAGG-T
1 AAAGAAGTCTCCCAGGTCAAAGTC-GACGA-GCAGA-CAAAGGAT
* * * *
33241 AAAGGAGTCTCCCAGGTCAAAGTCGA-TAGGCAAATGAAA-GAT
1 AAAGAAGTCTCCCAGGTCAAAGTCGACGA-GCAGA-CAAAGGAT
* * * * ** *
33283 AAATAAGTCTCCCAGGTCTAAGTCGATGGGCAGATGAAGGGT
1 AAAGAAGTCTCCCAGGTCAAAGTCGACGAGCAGACAAAGGAT
*** *
33325 GAAA-AAGTCTCTTGGGTCAAAGTCAACGAGCAGACAAA-GAGT
1 -AAAGAAGTCTCCCAGGTCAAAGTCGACGAGCAGACAAAGGA-T
*
33367 AAAAAAGTCTCCC
1 AAAGAAGTCTCCC
33380 GGATGAAAGA
Statistics
Matches: 276, Mismatches: 61, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
41 12 0.04
42 251 0.91
43 13 0.05
ACGTcount: A:0.35, C:0.18, G:0.30, T:0.17
Consensus pattern (42 bp):
AAAGAAGTCTCCCAGGTCAAAGTCGACGAGCAGACAAAGGAT
Found at i:33110 original size:84 final size:84
Alignment explanation
Indices: 33020--33178 Score: 230
Period size: 84 Copynumber: 1.9 Consensus size: 84
33010 GTCGACGAGT
* *
33020 AGAC-AAAGGATAAAGTAGTCTCCCAGGTCAAAGTCGACGGGCAGACAAAGGGTGAAGAAATCTC
1 AGACAAAAGG-TAAAGGAGTCTCCCAGGTCAAAGTCGACGGGCAAACAAAGGGTGAAGAAATCTC
*
33084 CTGGGTCAAAGCCGACCTGC
65 CTAGGTCAAAGCCGACCTGC
* * * * *
33104 AGACAAAAGGTGAAGGAGTCTCCCAGGTCAAAGTCGGCGGGCAAACAGAGGGTGAAGGAGTCTCC
1 AGACAAAAGGTAAAGGAGTCTCCCAGGTCAAAGTCGACGGGCAAACAAAGGGTGAAGAAATCTCC
33169 TAGGTCAAAG
66 TAGGTCAAAG
33179 TCGATAGGCA
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
84 61 0.92
85 5 0.08
ACGTcount: A:0.34, C:0.21, G:0.31, T:0.14
Consensus pattern (84 bp):
AGACAAAAGGTAAAGGAGTCTCCCAGGTCAAAGTCGACGGGCAAACAAAGGGTGAAGAAATCTCC
TAGGTCAAAGCCGACCTGC
Found at i:33191 original size:126 final size:126
Alignment explanation
Indices: 32989--33419 Score: 363
Period size: 126 Copynumber: 3.4 Consensus size: 126
32979 AGCCAAAGAG
* * * * *
32989 AAAGAAGTCTCCCAGGTCTAAGTCGACGAGTAGACAAAGGATAAAGTAGTCTCCCAGGTCAAAGT
1 AAAGGAGTCTCCCAGGTCAAAGTCGACGAGCAAACAAAGGATAAAGGAGTCTCCCAGGTCAAAGT
* **
33054 CGACGGGCAGACAAAGGGTGAAGAAATCTCCTGGGTCAAAGCCGACCTGCAGACAAAAGGT
66 CGACAGGCAGACAAAGGGTGAAGAAATCTCCTGGGTCAAAGCCGACAGGCAGACAAAAGGT
* * * * * * *
33115 GAAGGAGTCTCCCAGGTCAAAGTCGGCGGGCAAACAGAGGGTGAAGGAGTCTCCTAGGTCAAAGT
1 AAAGGAGTCTCCCAGGTCAAAGTCGACGAGCAAACAAAGGATAAAGGAGTCTCCCAGGTCAAAGT
* * * * ** * * *
33180 CGATAGGCAGACAGAGGGTGAAGGAGTCTTTTGGGTCAAAGCTGATAGGCAGATAAAAGGT
66 CGACAGGCAGACAAAGGGTGAAGAAATCTCCTGGGTCAAAGCCGACAGGCAGACAAAAGGT
* * ** *
33241 AAAGGAGTCTCCCAGGTCAAAGTCGA-TAGGCAAATGAAA-GATAAATAAGTCTCCCAGGTCTAA
1 AAAGGAGTCTCCCAGGTCAAAGTCGACGA-GCAAA-CAAAGGATAAAGGAGTCTCCCAGGTCAAA
** ** * * *
33304 GTCGATGGGCAGATGAAGGGTGAA-AAAGTCTCTTGGGTCAAAGTCAAC-GAGCAGAC-AAAGAG
64 GTCGACAGGCAGACAAAGGGTGAAGAAA-TCTCCTGGGTCAAAGCCGACAG-GCAGACAAAAG-G
33366 T
126 T
** * * * * *
33367 AAAAAAGTCTCCC-GGATGAAAGACGACTG-GCAAATAAAGGGTAAAAGAGTCTC
1 AAAGGAGTCTCCCAGG-TCAAAGTCGAC-GAGCAAACAAAGGATAAAGGAGTCTC
33420 TCGAGTCAAA
Statistics
Matches: 239, Mismatches: 57, Indels: 18
0.76 0.18 0.06
Matches are distributed among these distances:
125 11 0.05
126 226 0.95
127 2 0.01
ACGTcount: A:0.36, C:0.18, G:0.30, T:0.17
Consensus pattern (126 bp):
AAAGGAGTCTCCCAGGTCAAAGTCGACGAGCAAACAAAGGATAAAGGAGTCTCCCAGGTCAAAGT
CGACAGGCAGACAAAGGGTGAAGAAATCTCCTGGGTCAAAGCCGACAGGCAGACAAAAGGT
Found at i:33217 original size:84 final size:84
Alignment explanation
Indices: 33036--33348 Score: 277
Period size: 84 Copynumber: 3.7 Consensus size: 84
33026 AGGATAAAGT
* * * * **
33036 AGTCTCCCAGGTCAAAGTCGACGGGCAGACAAAGGGTGAAGAAATCTCCTGGGTCAAAGCCGACC
1 AGTCTCCCAGGTCAAAGTCGACGGGCAGACAAAGGGTGAAGGAGTCTCCTAGGTCAAAGTCGATA
*
33101 TGCAGACAAAAGGTGAAGG
66 GGCAGACAAAAGGTGAAGG
* * *
33120 AGTCTCCCAGGTCAAAGTCGGCGGGCAAACAGAGGGTGAAGGAGTCTCCTAGGTCAAAGTCGATA
1 AGTCTCCCAGGTCAAAGTCGACGGGCAGACAAAGGGTGAAGGAGTCTCCTAGGTCAAAGTCGATA
* *
33185 GGCAGACAGAGGGTGAAGG
66 GGCAGACAAAAGGTGAAGG
**** ** * * * *
33204 AGTCTTTTGGGTCAAAG-CTGATAGGCAGATAAAAGGTAAAGGAGTCTCCCAGGTCAAAGTCGAT
1 AGTCTCCCAGGTCAAAGTC-GACGGGCAGACAAAGGGTGAAGGAGTCTCCTAGGTCAAAGTCGAT
* ** * * **
33268 AGGCAAATGAAAGATAAATA
65 AGGCAGACAAAAGGTGAAGG
* * ** ** * *
33288 AGTCTCCCAGGTCTAAGTCGATGGGCAGATGAAGGGTGAAAAAGTCTCTTGGGTCAAAGTC
1 AGTCTCCCAGGTCAAAGTCGACGGGCAGACAAAGGGTGAAGGAGTCTCCTAGGTCAAAGTC
33349 AACGAGCAGA
Statistics
Matches: 179, Mismatches: 48, Indels: 4
0.77 0.21 0.02
Matches are distributed among these distances:
83 1 0.01
84 177 0.99
85 1 0.01
ACGTcount: A:0.33, C:0.18, G:0.31, T:0.18
Consensus pattern (84 bp):
AGTCTCCCAGGTCAAAGTCGACGGGCAGACAAAGGGTGAAGGAGTCTCCTAGGTCAAAGTCGATA
GGCAGACAAAAGGTGAAGG
Found at i:33375 original size:84 final size:84
Alignment explanation
Indices: 33227--33472 Score: 227
Period size: 84 Copynumber: 2.9 Consensus size: 84
33217 AAAGCTGATA
* * * * * * *
33227 GGCAGATAAAAGGTAAAGGAGTCTC-CCAGGTCAAAGTCGATAGGCAAATGAAAGATAAATAAGT
1 GGCAAATAAAGGGTAAAAGAGTCTCTCGA-GTCAAAGCCGATAGGCAAACGAAAGATAAAAAAGT
*
33291 CTCCCAGGTCTAAGTCGA-T
65 CTCCCAGGTCTAAGACGACT
* * * * * *
33310 GGGCAGATGAAGGGTGAAAA-AGTCTCTTGGGTCAAAGTC-A-ACGAGCAGAC-AAAGAGTAAAA
1 -GGCAAATAAAGGGT-AAAAGAGTCTCTCGAGTCAAAGCCGATA-G-GCAAACGAAAGA-TAAAA
**
33371 AAGTCTCCC-GGATGAAAGACGACT
61 AAGTCTCCCAGG-TCTAAGACGACT
33395 GGCAAATAAAGGGTAAAAGAGTCTCTCGAGTCAAAGCCGATAGGCAAACGAAAGATAAAAAAGTC
1 GGCAAATAAAGGGTAAAAGAGTCTCTCGAGTCAAAGCCGATAGGCAAACGAAAGATAAAAAAGTC
*
33460 TCCCAAGTCTAAG
66 TCCCAGGTCTAAG
33473 CCAATGGGTA
Statistics
Matches: 129, Mismatches: 21, Indels: 24
0.74 0.12 0.14
Matches are distributed among these distances:
82 1 0.01
83 13 0.10
84 102 0.79
85 12 0.09
86 1 0.01
ACGTcount: A:0.40, C:0.17, G:0.26, T:0.17
Consensus pattern (84 bp):
GGCAAATAAAGGGTAAAAGAGTCTCTCGAGTCAAAGCCGATAGGCAAACGAAAGATAAAAAAGTC
TCCCAGGTCTAAGACGACT
Found at i:33442 original size:42 final size:42
Alignment explanation
Indices: 33172--33440 Score: 144
Period size: 42 Copynumber: 6.4 Consensus size: 42
33162 AGTCTCCTAG
* * * * * * *
33172 GTCAAAGTCGATAGGCAGACAGAGGGTGAAGGAGTCTTTTGG
1 GTCAAAGTCGATAGGCAGATAAAGGGTAAAAGAGTCTCTCGA
* * *
33214 GTCAAAG-CTGATAGGCAGATAAAAGGTAAAGGAGTCTC-CCA
1 GTCAAAGTC-GATAGGCAGATAAAGGGTAAAAGAGTCTCTCGA
* * *
33255 GGTCAAAGTCGATAGGCAAATGAAA-GATAAATA-AGTCTC-CCA
1 -GTCAAAGTCGATAGGCAGAT-AAAGGGTAAA-AGAGTCTCTCGA
* * * * *
33297 GGTCTAAGTCGATGGGCAGATGAAGGGTGAAAA-AGTCTCTTGG
1 -GTCAAAGTCGATAGGCAGATAAAGGGT-AAAAGAGTCTCTCGA
* * * *
33340 GTCAAAGTC-A-ACGAGCAGACAAAGAGTAAAAAAGTCTCCCG-
1 GTCAAAGTCGATA-G-GCAGATAAAGGGTAAAAGAGTCTCTCGA
* * *
33381 GATGAAAGACGACT-GGCAAATAAAGGGTAAAAGAGTCTCTCGA
1 G-TCAAAGTCGA-TAGGCAGATAAAGGGTAAAAGAGTCTCTCGA
*
33424 GTCAAAGCCGATAGGCA
1 GTCAAAGTCGATAGGCA
33441 AACGAAAGAT
Statistics
Matches: 175, Mismatches: 35, Indels: 34
0.72 0.14 0.14
Matches are distributed among these distances:
41 11 0.06
42 154 0.88
43 10 0.06
ACGTcount: A:0.37, C:0.16, G:0.29, T:0.18
Consensus pattern (42 bp):
GTCAAAGTCGATAGGCAGATAAAGGGTAAAAGAGTCTCTCGA
Found at i:34938 original size:13 final size:13
Alignment explanation
Indices: 34920--34944 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
34910 CATAAAGTGT
34920 TGTATCGATACAA
1 TGTATCGATACAA
34933 TGTATCGATACA
1 TGTATCGATACA
34945 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:34962 original size:32 final size:33
Alignment explanation
Indices: 34900--34965 Score: 107
Period size: 32 Copynumber: 2.0 Consensus size: 33
34890 TTCAACGATT
34900 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
* *
34933 TGTATCGATACAT-AAGTTTTGTATTGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
34965 T
1 T
34966 TTAAGCTACT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.58
33 13 0.42
ACGTcount: A:0.35, C:0.11, G:0.17, T:0.38
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Found at i:35024 original size:13 final size:13
Alignment explanation
Indices: 35006--35033 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
34996 ATTACTCAAA
35006 TGTATCGATACAT
1 TGTATCGATACAT
35019 TGTATCGATACAT
1 TGTATCGATACAT
35032 TG
1 TG
35034 ATCTTTGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:35081 original size:52 final size:51
Alignment explanation
Indices: 35019--35167 Score: 194
Period size: 52 Copynumber: 2.9 Consensus size: 51
35009 ATCGATACAT
**
35019 TGTATCGATACATTGATCTTTGTATCGATACATGCAGGCAAATTTGCCCAGA
1 TGTATCGATACATTGAT-AATGTATCGATACATGCAGGCAAATTTGCCCAGA
* *
35071 TGTATCGATACACTAT-AAAATGTATCGATACATGCAAGCAAATTTGCCCAGA
1 TGTATCGATACA-T-TGATAATGTATCGATACATGCAGGCAAATTTGCCCAGA
*
35123 TGTATCGATACACTATGA-AATGTATCGATACATGCAGGCGAATTT
1 TGTATCGATACA-T-TGATAATGTATCGATACATGCAGGCAAATTT
35168 TCATATTTTG
Statistics
Matches: 88, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
52 84 0.95
53 3 0.03
54 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (51 bp):
TGTATCGATACATTGATAATGTATCGATACATGCAGGCAAATTTGCCCAGA
Found at i:38131 original size:23 final size:23
Alignment explanation
Indices: 38101--38146 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
38091 TCATCTACCG
38101 ATCTTTCTCCTTTAATCAACACA
1 ATCTTTCTCCTTTAATCAACACA
38124 ATCTTTCTCCTTTAATCAACACA
1 ATCTTTCTCCTTTAATCAACACA
38147 CTTCCCATCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.30, G:0.00, T:0.39
Consensus pattern (23 bp):
ATCTTTCTCCTTTAATCAACACA
Found at i:47548 original size:22 final size:22
Alignment explanation
Indices: 47499--47611 Score: 86
Period size: 22 Copynumber: 5.0 Consensus size: 22
47489 CGTCCTTCGC
47499 AAAAAAAAAT-AAAAAATAAAA
1 AAAAAAAAATAAAAAAATAAAA
*
47520 AATAAAAAAATAAAAAAATATAGA
1 AA-AAAAAAATAAAAAAATA-AAA
* *
47544 AAAAAAAGA-AAAAAAACAAAA
1 AAAAAAAAATAAAAAAATAAAA
** * * *
47565 CCAAACAAATAACAAAACAAAA
1 AAAAAAAAATAAAAAAATAAAA
* *
47587 AACAAAACAAAAAAAAAAACAAAA
1 AA-AAAA-AAATAAAAAAATAAAA
47611 A
1 A
47612 CAACAACAAA
Statistics
Matches: 72, Mismatches: 14, Indels: 9
0.76 0.15 0.09
Matches are distributed among these distances:
21 9 0.12
22 27 0.38
23 17 0.24
24 19 0.26
ACGTcount: A:0.84, C:0.08, G:0.02, T:0.06
Consensus pattern (22 bp):
AAAAAAAAATAAAAAAATAAAA
Found at i:47558 original size:12 final size:12
Alignment explanation
Indices: 47499--47623 Score: 83
Period size: 12 Copynumber: 10.2 Consensus size: 12
47489 CGTCCTTCGC
*
47499 AAAAAAAAA-TA
1 AAAAAAAAACAA
*
47510 AAAAATAAA-AA
1 AAAAAAAAACAA
* *
47521 ATAAAAAAATAA
1 AAAAAAAAACAA
* * *
47533 AAAAATATAGAA
1 AAAAAAAAACAA
*
47545 AAAAAAGAAAAAA
1 AAAAAA-AAACAA
47558 AACAAAACCAAACAA
1 AA-AAAA--AAACAA
* *
47573 ATAACAAAACAA
1 AAAAAAAAACAA
*
47585 AAAACAAAACAA
1 AAAAAAAAACAA
47597 AAAAAAAAACAA
1 AAAAAAAAACAA
* *
47609 AAACAACAACAA
1 AAAAAAAAACAA
47621 AAA
1 AAA
47624 GGGTCCGGAT
Statistics
Matches: 91, Mismatches: 19, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
11 16 0.18
12 56 0.62
13 6 0.07
14 7 0.08
15 6 0.07
ACGTcount: A:0.83, C:0.10, G:0.02, T:0.06
Consensus pattern (12 bp):
AAAAAAAAACAA
Found at i:47564 original size:17 final size:17
Alignment explanation
Indices: 47499--47623 Score: 92
Period size: 17 Copynumber: 7.2 Consensus size: 17
47489 CGTCCTTCGC
*
47499 AAAAAAAAATAAAA-AA
1 AAAAAAAAACAAAACAA
*
47515 TAAAAAATAAA-AAAATAA
1 -AAAAAA-AAACAAAACAA
* * * *
47533 AAAAATATAGAAAAAAA
1 AAAAAAAAACAAAACAA
*
47550 AGAAAAAAAACAAAACCA
1 A-AAAAAAAACAAAACAA
* *
47568 AACAAATAACAAAACAA
1 AAAAAAAAACAAAACAA
* *
47585 AAAACAAAACAAAAAAA
1 AAAAAAAAACAAAACAA
47602 AAAACAAAAACAACAACAA
1 AAAA-AAAAACAA-AACAA
47621 AAA
1 AAA
47624 GGGTCCGGAT
Statistics
Matches: 85, Mismatches: 17, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
16 2 0.02
17 52 0.61
18 24 0.28
19 7 0.08
ACGTcount: A:0.83, C:0.10, G:0.02, T:0.06
Consensus pattern (17 bp):
AAAAAAAAACAAAACAA
Found at i:47619 original size:24 final size:23
Alignment explanation
Indices: 47498--47623 Score: 96
Period size: 24 Copynumber: 5.3 Consensus size: 23
47488 GCGTCCTTCG
*
47498 CAAAAAAAAATAA-AAAATAAAAAA
1 CAAAAAAAAA-AACAAAA-ACAAAA
* *
47522 TAAAAAAATAAAA-AAATATAGAAAA
1 CAAAAAAA-AAAACAAA-A-ACAAAA
* *
47547 AAAAGAAAAAAAAC-AAAACCAAA
1 CAAA-AAAAAAAACAAAAACAAAA
* *
47570 CAAATAACAAAACAAAAAACAAAA
1 CAAAAAAAAAAAC-AAAAACAAAA
47594 CAAAAAAAAAAACAAAAACAACAA
1 CAAAAAAAAAAACAAAAACAA-AA
47618 CAAAAA
1 CAAAAA
47624 GGGTCCGGAT
Statistics
Matches: 84, Mismatches: 11, Indels: 14
0.77 0.10 0.13
Matches are distributed among these distances:
22 7 0.08
23 15 0.18
24 40 0.48
25 18 0.21
26 4 0.05
ACGTcount: A:0.83, C:0.10, G:0.02, T:0.06
Consensus pattern (23 bp):
CAAAAAAAAAAACAAAAACAAAA
Found at i:47619 original size:29 final size:28
Alignment explanation
Indices: 47498--47622 Score: 87
Period size: 29 Copynumber: 4.4 Consensus size: 28
47488 GCGTCCTTCG
* * *
47498 CAAAAA-AAAATAAAAAATAAAAAATAA
1 CAAAAACAAAACAAAAAAAAAAAAAAAA
*
47525 -AAAAATAAAA-AAATATAGAAAAAAAAGAAA
1 CAAAAACAAAACAAA-A-A-AAAAAAAA-AAA
* * * *
47555 -AAAAACAAAACCAAACAAATAACAAAA
1 CAAAAACAAAACAAAAAAAAAAAAAAAA
47582 CAAAAAACAAAACAAAAAAAAAAACAAAAA
1 C-AAAAACAAAACAAAAAAAAAAA-AAAAA
*
47612 CAACAACAAAA
1 CAAAAACAAAA
47623 AGGGTCCGGA
Statistics
Matches: 77, Mismatches: 12, Indels: 16
0.73 0.11 0.15
Matches are distributed among these distances:
26 8 0.10
27 8 0.10
28 7 0.09
29 35 0.45
30 17 0.22
31 2 0.03
ACGTcount: A:0.82, C:0.10, G:0.02, T:0.06
Consensus pattern (28 bp):
CAAAAACAAAACAAAAAAAAAAAAAAAA
Found at i:47623 original size:1 final size:1
Alignment explanation
Indices: 47499--47611 Score: 64
Period size: 1 Copynumber: 113.0 Consensus size: 1
47489 CGTCCTTCGC
* * * * * * * * *
47499 AAAAAAAAATAAAAAATAAAAAATAAAAAAATAAAAAAATATAGAAAAAAAAGAAAAAAAACAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
** * * * * * * *
47564 ACCAAACAAATAACAAAACAAAAAACAAAACAAAAAAAAAAACAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
47612 CAACAACAAA
Statistics
Matches: 78, Mismatches: 34, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
1 78 1.00
ACGTcount: A:0.84, C:0.08, G:0.02, T:0.06
Consensus pattern (1 bp):
A
Found at i:49167 original size:27 final size:27
Alignment explanation
Indices: 49115--49168 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
49105 GCACCTTGTT
* *
49115 CCTTTTAAATCCACAACTCTGCGGCAC
1 CCTTTTAAACCCACAACTCCGCGGCAC
* *
49142 CCTTTTAAGCCCACAACTCCGTGGCAC
1 CCTTTTAAACCCACAACTCCGCGGCAC
49169 TCTGTTTCCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.24, C:0.39, G:0.13, T:0.24
Consensus pattern (27 bp):
CCTTTTAAACCCACAACTCCGCGGCAC
Found at i:49186 original size:34 final size:32
Alignment explanation
Indices: 49088--49491 Score: 304
Period size: 34 Copynumber: 12.3 Consensus size: 32
49078 ATCTTTTTCA
*
49088 AAGCCCACAACTCCGTTGCACCTTGTTCCTTTT
1 AAGCCCACAACTCCGTGGCACCTT-TTCCTTTT
** * *
49121 AAATCCACAACTCTGCGGCA-C----CCTTTT
1 AAGCCCACAACTCCGTGGCACCTTTTCCTTTT
*
49148 AAGCCCACAACTCCGTGGCACTCTGTTTCCTTCT
1 AAGCCCACAACTCCGTGGCAC-CT-TTTCCTTTT
* * * *
49182 AAGCCCACAACTTCGTGACACTTTTTTCTTTT
1 AAGCCCACAACTCCGTGGCACCTTTTCCTTTT
* *
49214 CAAAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
1 --AAGCCCACAACTCCGTGGCACC-TTTTCCTTTT
* ** * *
49249 AAAGCCCATAACTCTATGGCACTTTTTTCTTTT
1 -AAGCCCACAACTCCGTGGCACCTTTTCCTTTT
*
49282 CAAAGCCCACCACTCCGTGGCACCTTTT-CTTTT
1 --AAGCCCACAACTCCGTGGCACCTTTTCCTTTT
* *
49315 AAAGTCCACAACCCCGTGGCACCTTGTTCCTTTT
1 -AAGCCCACAACTCCGTGGCACCTT-TTCCTTTT
* * *
49349 AAGTCCACGACTCTGTGGCACC--TT-CTTTT
1 AAGCCCACAACTCCGTGGCACCTTTTCCTTTT
49378 CAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
1 --AAGCCCACAACTCCGTGGCAC-C-TTTT-CCTTTT
* *
49415 AAAGTCCACAACTTCGTGGCACCTTATTCCTTTT
1 -AAGCCCACAACTCCGTGGCACCTT-TTCCTTTT
* * * *
49449 AAGTCCACAACTTCGTGGCATCTTTCCCTTTTT
1 AAGCCCACAACTCCGTGGCACCTTTTCC-TTTT
49482 AAAGCCCACA
1 -AAGCCCACA
49492 CAAGTCGGTG
Statistics
Matches: 300, Mismatches: 47, Indels: 47
0.76 0.12 0.12
Matches are distributed among these distances:
27 22 0.07
29 6 0.02
30 2 0.01
31 18 0.06
32 34 0.11
33 77 0.26
34 103 0.34
35 13 0.04
36 20 0.07
37 5 0.02
ACGTcount: A:0.21, C:0.33, G:0.12, T:0.33
Consensus pattern (32 bp):
AAGCCCACAACTCCGTGGCACCTTTTCCTTTT
Found at i:49337 original size:100 final size:99
Alignment explanation
Indices: 49082--49491 Score: 407
Period size: 100 Copynumber: 4.2 Consensus size: 99
49072 AGTGGCATCT
* * *
49082 TTTTCAAAGCCCACAACTCCGTTGCAC-CTTGTTCCTTTTAAA-TCCACAACTCTGCGGCA-C--
1 TTTTCAAAGCCCACAACTCCGTGGCACTCTT-TTCCTTTTAAAGTCCACAACTCCGTGGCACCTT
*
49142 --CCTTTTAAGCCCACAACTCCGTGGCACTCTGTTTC
65 TTCCTTTTAAGCCCACAACTCTGTGGCACT-T-TTTC
* * * * *
49177 -CTTCTAAGCCCACAACTTCGTGACACT-TTTTTCTTTTCAAAGTCCACAACTCCGTGGCACCTT
1 TTTTCAAAGCCCACAACTCCGTGGCACTCTTTTCCTTTT-AAAGTCCACAACTCCGTGGCACC-T
* * *
49240 TTTCTTTTTAAAGCCCATAACTCTATGGCACTTTTTTC
64 TTTCCTTTT-AAGCCCACAACTCTGTGGCAC-TTTTTC
* *
49278 TTTTCAAAGCCCACCACTCCGTGGCAC-CTTTT-CTTTTAAAGTCCACAACCCCGTGGCACCTTG
1 TTTTCAAAGCCCACAACTCCGTGGCACTCTTTTCCTTTTAAAGTCCACAACTCCGTGGCACCTT-
* * *
49341 TTCCTTTTAAGTCCACGACTCTGTGGCAC--CTTC
65 TTCCTTTTAAGCCCACAACTCTGTGGCACTTTTTC
*
49374 TTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGTCCACAACTTCGTGGCACCT
1 TTTTCAAAGCCCACAACTCCGTGGCACTC-TTTT-CCTTTTAAAGTCCACAACTCCGTGGCACCT
* **
49439 TATTCCTTTTAAGTCCACAACT-TCGTGGCATCTTTCCC
64 T-TTCCTTTTAAGCCCACAACTCT-GTGGCA-CTTTTTC
*
49477 TTTTTAAAGCCCACA
1 TTTTCAAAGCCCACA
49492 CAAGTCGGTG
Statistics
Matches: 260, Mismatches: 33, Indels: 36
0.79 0.10 0.11
Matches are distributed among these distances:
93 7 0.03
94 26 0.10
95 15 0.06
96 30 0.12
97 1 0.00
98 4 0.02
99 20 0.08
100 82 0.32
101 15 0.06
102 44 0.17
103 16 0.06
ACGTcount: A:0.21, C:0.33, G:0.12, T:0.34
Consensus pattern (99 bp):
TTTTCAAAGCCCACAACTCCGTGGCACTCTTTTCCTTTTAAAGTCCACAACTCCGTGGCACCTTT
TCCTTTTAAGCCCACAACTCTGTGGCACTTTTTC
Found at i:49568 original size:32 final size:32
Alignment explanation
Indices: 49482--49560 Score: 149
Period size: 32 Copynumber: 2.5 Consensus size: 32
49472 TTCCCTTTTT
*
49482 AAAGCCCACACAAGTCGGTGGCAACCCTTCCC
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCCA
49514 AAAGCCCACACAAGTCGGTGGCAACCCTTCCA
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCCA
49546 AAAGCCCACACAAGT
1 AAAGCCCACACAAGT
49561 TAGTGGCATC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 46 1.00
ACGTcount: A:0.33, C:0.38, G:0.18, T:0.11
Consensus pattern (32 bp):
AAAGCCCACACAAGTCGGTGGCAACCCTTCCA
Found at i:49686 original size:43 final size:43
Alignment explanation
Indices: 49623--50080 Score: 547
Period size: 43 Copynumber: 10.1 Consensus size: 43
49613 GCACCTTCAT
*
49623 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
* *
49666 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA----C
*
49713 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
* * * *
49758 CTTTAAGTCCAATATCGCTGGCCTTGAATCAACATATTAGCACCTTC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA----C
*
49805 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
* *
49850 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA----C
*
49897 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
* *
49942 CTTTAAGGCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA----C
*
49989 TTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
* *
50034 CTTTAAGTCCAATATAGCTGGCCTTGAAACAGCATATTGGCAC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
50077 CTTT
1 CTTT
50081 TCCATCTTTA
Statistics
Matches: 360, Mismatches: 31, Indels: 48
0.82 0.07 0.11
Matches are distributed among these distances:
43 198 0.55
45 4 0.01
47 4 0.01
49 154 0.43
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (43 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
Found at i:49729 original size:92 final size:92
Alignment explanation
Indices: 49572--50133 Score: 980
Period size: 92 Copynumber: 6.1 Consensus size: 92
49562 AGTGGCATCT
* *
49572 ACCTTTAAGTCCAATATTGCTGGCCTTGAATCAACATATTGGCACCTTCATCTTTAAGTCCAATG
1 ACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATG
49637 TAGCTGGCCTTGAATCAGCACATTGGC
66 TAGCTGGCCTTGAATCAGCACATTGGC
49664 ACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATG
1 ACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATG
49729 TAGCTGGCCTTGAATCAGCACATTGGC
66 TAGCTGGCCTTGAATCAGCACATTGGC
* *
49756 ACCTTTAAGTCCAATATCGCTGGCCTTGAATCAACATATTAGCACCTTCATCTTTAAGTCCAATG
1 ACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATG
49821 TAGCTGGCCTTGAATCAGCACATTGGC
66 TAGCTGGCCTTGAATCAGCACATTGGC
49848 ACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATG
1 ACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATG
49913 TAGCTGGCCTTGAATCAGCACATTGGC
66 TAGCTGGCCTTGAATCAGCACATTGGC
* * *
49940 ACCTTTAAGGCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATG
1 ACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATG
50005 TAGCTGGCCTTGAATCAGCACATTGGC
66 TAGCTGGCCTTGAATCAGCACATTGGC
* * *
50032 ACCTTTAAGTCCAATATAGCTGGCCTTGAAACAGCATATTGGCACCTTTTCCATCTTTAAGTTCA
1 ACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--TT-CATCTTTAAGTCCA
* *
50097 ATGTAGCTGGCCTTGAATCAGAACATTGAC
63 ATGTAGCTGGCCTTGAATCAGCACATTGGC
50127 ATCCTTT
1 A-CCTTT
50134 TTCTCATCTT
Statistics
Matches: 451, Mismatches: 15, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
92 403 0.89
94 2 0.00
95 41 0.09
96 5 0.01
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (92 bp):
ACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATG
TAGCTGGCCTTGAATCAGCACATTGGC
Found at i:50112 original size:52 final size:55
Alignment explanation
Indices: 50034--50155 Score: 160
Period size: 52 Copynumber: 2.3 Consensus size: 55
50024 ACATTGGCAC
* * *
50034 CTTTAAGTCCAATATAGCTGGCCTTGAAACAGCATATTGGCA-CC-TTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAAACAGAACATTGACATCCTTTTTCTCAT
* * *
50086 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGAACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAAACAGAACATTGACATCCTTTTTCTCAT
*
50141 CTTTAAGCCCAATAT
1 CTTTAAGTCCAATAT
50156 CGTTGGCCAT
Statistics
Matches: 58, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
52 36 0.62
53 2 0.03
54 5 0.09
55 15 0.26
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.35
Consensus pattern (55 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAAACAGAACATTGACATCCTTTTTCTCAT
Found at i:50163 original size:55 final size:52
Alignment explanation
Indices: 50034--50171 Score: 159
Period size: 52 Copynumber: 2.6 Consensus size: 52
50024 ACATTGGCAC
* * * *
50034 CTTTAAGTCCAATATAGCTGGCCTTGAAACAGCATATTGGCACCTTTTCCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGAACATTGACACCTTTTCCAT
* *
50086 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGAACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGAACATTGACA-CC-TTTTC-CAT
* * * *
50141 CTTTAAGCCCAATATCGTTGGCCATGAATCA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCA
50172 ACATATTGGC
Statistics
Matches: 71, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
52 36 0.51
53 2 0.03
54 5 0.07
55 28 0.39
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.34
Consensus pattern (52 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGAACATTGACACCTTTTCCAT
Found at i:54558 original size:33 final size:33
Alignment explanation
Indices: 54503--54571 Score: 93
Period size: 33 Copynumber: 2.1 Consensus size: 33
54493 AGTTGATCAC
* * *
54503 TTCACTTTCACAGCCCATGGATGAGCACTTTAG
1 TTCACTTTCACAGCACAAGGATGAGAACTTTAG
**
54536 TTCACTTTCGTAGCACAAGGATGAGAACTTTAG
1 TTCACTTTCACAGCACAAGGATGAGAACTTTAG
54569 TTC
1 TTC
54572 TCTTAACCGA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (33 bp):
TTCACTTTCACAGCACAAGGATGAGAACTTTAG
Found at i:55524 original size:20 final size:20
Alignment explanation
Indices: 55501--55552 Score: 79
Period size: 19 Copynumber: 2.6 Consensus size: 20
55491 CACTTTCAGA
*
55501 TGTATCGATACATTATGCTT
1 TGTATCGATACATTATGCAT
*
55521 TGTATCGATACA-TATTCAT
1 TGTATCGATACATTATGCAT
55540 TGTATCGATACAT
1 TGTATCGATACAT
55553 GAACAAATGT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 17 0.59
20 12 0.41
ACGTcount: A:0.29, C:0.15, G:0.13, T:0.42
Consensus pattern (20 bp):
TGTATCGATACATTATGCAT
Found at i:55552 original size:19 final size:20
Alignment explanation
Indices: 55481--55551 Score: 83
Period size: 20 Copynumber: 3.6 Consensus size: 20
55471 AACCCTTGTA
*
55481 TGTATCGATACACT-TTCAGA
1 TGTATCGATACACTATTCA-T
* * *
55501 TGTATCGATACATTATGCTT
1 TGTATCGATACACTATTCAT
55521 TGTATCGATACA-TATTCAT
1 TGTATCGATACACTATTCAT
55540 TGTATCGATACA
1 TGTATCGATACA
55552 TGAACAAATG
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
19 17 0.39
20 25 0.57
21 2 0.05
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.39
Consensus pattern (20 bp):
TGTATCGATACACTATTCAT
Found at i:56439 original size:14 final size:14
Alignment explanation
Indices: 56408--56450 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 14
56398 CTTAAGCTTA
56408 CATTTTT-TTCTTTT
1 CATTTTTCTT-TTTT
56422 -ATTTTTCTTTTTT
1 CATTTTTCTTTTTT
56435 CATTTTTCTCTTTTT
1 CATTTTTCT-TTTTT
56450 C
1 C
56451 TCGTTATTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
13 10 0.38
14 10 0.38
15 6 0.23
ACGTcount: A:0.07, C:0.16, G:0.00, T:0.77
Consensus pattern (14 bp):
CATTTTTCTTTTTT
Found at i:60580 original size:156 final size:154
Alignment explanation
Indices: 60353--61052 Score: 501
Period size: 156 Copynumber: 4.5 Consensus size: 154
60343 TAAATTCAAG
* * * * *
60353 AAAAATTA-CGAAAATA-CTCTAGGGGATAACTTCGACGTAAAAGTACTTGATACCCCTAAAGGA
1 AAAAATTACCG-AAATACCCCTAGGGGATACCTTCGACGTAAAAGTACCTAATA-CCCTAAAAGA
60416 CTTAAAAAGGATTATAGATGAGACTGAACCTATCCTAAATACCCCACCTTTGGCATAAAAGCAAA
64 CTTAAAAAGGATTATAGATGAGA-TGAACCTATCCTAAATA-CCCACCTTTGGCATAAAAGCAAA
* * *
60481 CTCAATGACAATCTAAGACTCGATTCTA
127 CTCGATGACAACCTAAGACTTGATTCTA
* * * * * *
60509 AAAAATTACCGAAATGCCCCTAGGGGATATCTTTGACGTAGAAGTGCTTAATACCCTAAAAGACT
1 AAAAATTACCGAAATACCCCTAGGGGATACCTTCGACGTAAAAGTACCTAATACCCTAAAAGACT
* * * * * * * *
60574 TAAAAAGGATTACAAAATGGGATAAACCTATCCTAAATACCCA-ATATTGACATTAAAGCAGACT
66 TAAAAAGGATTA-TAGATGAGATGAACCTATCCTAAATACCCACCT-TTGGCATAAAAGCAAACT
* * *
60638 CGGTAACAACCTAAGACTTGGTTCTA
129 CGATGACAACCTAAGACTTGATTCTA
* ** * ** * ** * **
60664 AACAATTACAAAAATACCCTTAGGGGATATTTTTGATATAAAAGTACCCAGCA-CCTATAAAGGA
1 AAAAATTACCGAAATACCCCTAGGGGATACCTTCGACGTAAAAGTACCTAATACCCTA-AAA-GA
* * * * * * ** ** *
60728 C-T-AAAAGGGTCATAGA-AAGGATGAACTTATCCTAAATACCTACCTTCGGTGTGGAAGCGAAC
64 CTTAAAAAGGATTATAGATGA-GATGAACCTATCCTAAATACCCACCTTTGGCATAAAAGCAAAC
* * *
60790 TCGGTGACAA-CTTAG----GACTCTA
128 TCGATGACAACCTAAGACTTGATTCTA
* * * * *
60812 AAAAATTA-TGAAAATGCCCCTAGGGGATACCTTCGATGTATAAGTACCTGATACCTCTAAAAGA
1 AAAAATTACCG-AAATACCCCTAGGGGATACCTTCGACGTAAAAGTACCTAATACC-CTAAAAGA
* * * * * * * * *
60876 CTTGAAAAGGATTTTAAAAAGGGATGAACCTATCGTAAATATCTACCTTTGGCATAAAATCAAAC
64 CTTAAAAAGGATTAT-AGATGAGATGAACCTATCCTAAATACCCACCTTTGGCATAAAAGCAAAC
* * *
60941 TCGATGACAACCTAGGACTTGGTTTTA
128 TCGATGACAACCTAAGACTTGATTCTA
* * * * *
60968 AAAAATTACC-AGAATACCCTTAGGGGATACCTTCAACGTAAAAGTGCCCAATACCCCTAAAGGA
1 AAAAATTACCGA-AATACCCCTAGGGGATACCTTCGACGTAAAAGTACCTAATA-CCCTAAAAGA
*
61032 CTAAAAAAGGATTTATAGATG
64 CTTAAAAAGGA-TTATAGATG
61053 TAAAGGAATG
Statistics
Matches: 411, Mismatches: 109, Indels: 48
0.72 0.19 0.08
Matches are distributed among these distances:
148 46 0.11
149 5 0.01
150 11 0.03
151 44 0.11
152 7 0.02
153 40 0.10
154 14 0.03
155 83 0.20
156 118 0.29
157 43 0.10
ACGTcount: A:0.40, C:0.19, G:0.17, T:0.25
Consensus pattern (154 bp):
AAAAATTACCGAAATACCCCTAGGGGATACCTTCGACGTAAAAGTACCTAATACCCTAAAAGACT
TAAAAAGGATTATAGATGAGATGAACCTATCCTAAATACCCACCTTTGGCATAAAAGCAAACTCG
ATGACAACCTAAGACTTGATTCTA
Found at i:60699 original size:155 final size:156
Alignment explanation
Indices: 60353--60710 Score: 391
Period size: 155 Copynumber: 2.3 Consensus size: 156
60343 TAAATTCAAG
* * * * * *
60353 AAAAATTACGAAAATACTCTAGGGGATAACTTCGACGTAAAAGTACTTGATACCCCTAAAGGACT
1 AAAAATTACAAAAATACCCTAGGGGATATCTTTGACGTAAAAGTACTTAATACCCCTAAAAGACT
* * * * *
60418 TAAAAAGGATTATAGATGAGACTGAACCTATCCTAAATACCCCACCTTTGGCATAAAAGCAAACT
66 TAAAAAGGATTAAAAATGAGACTAAACCTATCCTAAATACCCCACATTTGACATAAAAGCAAACT
* *
60483 CAATGACAATCTAAGACTCGATTCTA
131 CAATAACAACCTAAGACTCGATTCTA
** * * *
60509 AAAAATTACCGAAATGCCCCTAGGGGATATCTTTGACGTAGAAGTGCTTAATA-CCCTAAAAGAC
1 AAAAATTACAAAAAT-ACCCTAGGGGATATCTTTGACGTAAAAGTACTTAATACCCCTAAAAGAC
* * *
60573 TTAAAAAGGATTACAAAATGGGA-TAAACCTATCCTAAATA-CCCA-ATATTGACATTAAAGCAG
65 TTAAAAAGGATTA-AAAATGAGACTAAACCTATCCTAAATACCCCACAT-TTGACATAAAAGCAA
** * *
60635 ACTCGGTAACAACCTAAGACTTGGTTCTA
128 ACTCAATAACAACCTAAGACTCGATTCTA
* * **
60664 AACAATTACAAAAATACCCTTAGGGGATATTTTTGATATAAAAGTAC
1 AAAAATTACAAAAATACCC-TAGGGGATATCTTTGACGTAAAAGTAC
60711 CCAGCACCTA
Statistics
Matches: 165, Mismatches: 33, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
154 4 0.02
155 73 0.44
156 52 0.32
157 36 0.22
ACGTcount: A:0.41, C:0.19, G:0.15, T:0.25
Consensus pattern (156 bp):
AAAAATTACAAAAATACCCTAGGGGATATCTTTGACGTAAAAGTACTTAATACCCCTAAAAGACT
TAAAAAGGATTAAAAATGAGACTAAACCTATCCTAAATACCCCACATTTGACATAAAAGCAAACT
CAATAACAACCTAAGACTCGATTCTA
Found at i:62424 original size:11 final size:11
Alignment explanation
Indices: 62408--62467 Score: 66
Period size: 11 Copynumber: 5.2 Consensus size: 11
62398 AGTTTTGCTA
62408 TTTTTCTTTTT
1 TTTTTCTTTTT
62419 TTTTTCCTCTTTT
1 TTTTT-CT-TTTT
*
62432 TCTTTCTTTTT
1 TTTTTCTTTTT
*
62443 TCTTTCTTTTT
1 TTTTTCTTTTT
*
62454 TGTTTTATTTTT
1 T-TTTTCTTTTT
62466 TT
1 TT
62468 GTTGAGTTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
11 22 0.51
12 13 0.30
13 8 0.19
ACGTcount: A:0.02, C:0.13, G:0.02, T:0.83
Consensus pattern (11 bp):
TTTTTCTTTTT
Found at i:68948 original size:28 final size:28
Alignment explanation
Indices: 68862--69347 Score: 542
Period size: 28 Copynumber: 16.9 Consensus size: 28
68852 AAAAAAAAAA
*
68862 GTGCCACTAACTTCTGTGGGCTTTGAAAAGAG
1 GTGCCACTGAC-T-TGTGGGCTTTG-AAAG-G
* *
68894 TTGCCACCGACTTGTGTGGGCTTTGAAAGG
1 GTGCCACTGAC-T-TGTGGGCTTTGAAAGG
* **
68924 GGGCCACCAACTTGTGGGCTTTGAAAGG
1 GTGCCACTGACTTGTGGGCTTTGAAAGG
* * * *
68952 GTATACCATCTAACTTATGGGCTTTAAAAGG
1 G--TGCCA-CTGACTTGTGGGCTTTGAAAGG
*
68983 GTGCCACTGACTTGTGGGCTTTGAAGGG
1 GTGCCACTGACTTGTGGGCTTTGAAAGG
*
69011 GTACCACTGACTTGTGGGCTTTGAAAGG
1 GTGCCACTGACTTGTGGGCTTTGAAAGG
*
69039 GTGCCACTGACTTGTGGGCATTGAAATGG
1 GTGCCACTGACTTGTGGGCTTTGAAA-GG
* *
69068 GTGGCACTGATTTGTGTGGGCTTTGAAAGG
1 GTGCCACTGA-CT-TGTGGGCTTTGAAAGG
* * *
69098 GTGCCACTGGCTTGTGGTCTTTGAAAAG
1 GTGCCACTGACTTGTGGGCTTTGAAAGG
* * *
69126 GTGCCACTAACTTGTGGGTTTTGAAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAGG
*
69154 GTGCCACTAACTTGTGGGCTTTGAAAGG
1 GTGCCACTGACTTGTGGGCTTTGAAAGG
* *
69182 ATGCCACTGACTTGTGGTCTTTTG-AAGAG
1 GTGCCACTGACTTGTGGGC-TTTGAAAG-G
* *
69211 ATGCCACTGACTTGTGGCCTTTGAAAGG
1 GTGCCACTGACTTGTGGGCTTTGAAAGG
* *
69239 ATGCCACTGACTTATGGGCTTTGAAAGG
1 GTGCCACTGACTTGTGGGCTTTGAAAGG
* *
69267 ATGCCACTAACTTGTGGGCTTTGAAAGG
1 GTGCCACTGACTTGTGGGCTTTGAAAGG
* *
69295 GTGCCACTGACTTATGAGCTTTGAAAGG
1 GTGCCACTGACTTGTGGGCTTTGAAAGG
*
69323 ATGCCACTGACTTGTGGGCTTTGAA
1 GTGCCACTGACTTGTGGGCTTTGAA
69348 GAGATGAACG
Statistics
Matches: 393, Mismatches: 52, Indels: 22
0.84 0.11 0.05
Matches are distributed among these distances:
28 269 0.68
29 43 0.11
30 23 0.06
31 37 0.09
32 21 0.05
ACGTcount: A:0.22, C:0.18, G:0.31, T:0.30
Consensus pattern (28 bp):
GTGCCACTGACTTGTGGGCTTTGAAAGG
Found at i:69052 original size:115 final size:112
Alignment explanation
Indices: 68876--69347 Score: 541
Period size: 115 Copynumber: 4.1 Consensus size: 112
68866 CACTAACTTC
* * * *
68876 TGTGGGCTTTGAAAAGAGTTGCCACCGACTTGTGTGGGCTTTGAAAGGGGGCCACCAACTTGTGG
1 TGTGGGCTTTG-AAAG-GGTGCCACTGAC-T-TGTGGGCTTTGAAAGGGTGCCACTAACTTGTGG
* * *
68941 GCTTTGAAAGGGTATACCATCTAACTTATGGGCTTTAAAAGGGTGCCACTGACT
62 GCTTTGAAAGGG--TGCCA-CTAACTTATGGGCTTTGAAAGGATGCCACTGACT
* * * *
68995 TGTGGGCTTTGAAGGGGTACCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCAT
1 TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTT
* ** * * *
69060 TGAAATGGGTGGCACTGATTTGTGTGGGCTTTGAAAGGGTGCCACTGGCT
66 TGAAA-GGGTGCCACT-AACT-TATGGGCTTTGAAAGGATGCCACTGACT
* * * * *
69110 TGTGGTCTTTGAAAAGGTGCCACTAACTTGTGGGTTTTGAAAGAGTGCCACTAACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTT
* * * *
69175 TGAAAGGATGCCACTGACTTGTGGTCTTTTG-AAGAGATGCCACTGACT
66 TGAAAGGGTGCCACTAACTTATGGGC-TTTGAAAG-GATGCCACTGACT
* * * *
69223 TGTGGCCTTTGAAAGGATGCCACTGACTTATGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTT
* *
69288 TGAAAGGGTGCCACTGACTTATGAGCTTTGAAAGGATGCCACTGACT
66 TGAAAGGGTGCCACTAACTTATGGGCTTTGAAAGGATGCCACTGACT
69335 TGTGGGCTTTGAA
1 TGTGGGCTTTGAA
69348 GAGATGAACG
Statistics
Matches: 302, Mismatches: 45, Indels: 19
0.83 0.12 0.05
Matches are distributed among these distances:
112 38 0.13
113 100 0.33
114 13 0.04
115 124 0.41
116 4 0.01
117 9 0.03
118 3 0.01
119 11 0.04
ACGTcount: A:0.22, C:0.17, G:0.31, T:0.30
Consensus pattern (112 bp):
TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTT
TGAAAGGGTGCCACTAACTTATGGGCTTTGAAAGGATGCCACTGACT
Found at i:70619 original size:19 final size:19
Alignment explanation
Indices: 70595--70665 Score: 63
Period size: 21 Copynumber: 3.5 Consensus size: 19
70585 TCTAGACCCC
*
70595 TTTTTTGTTTGTTTGTTTT-
1 TTTTTTTTTTGTTT-TTTTG
70614 TTTTTTTTTTGGCTTTTTTCTG
1 TTTTTTTTTT-G-TTTTTT-TG
*
70636 TTTTTTTGTTGTTTTTCTTAG
1 TTTTTTTTTTGTTTTT-TT-G
70657 TTTTTTTTT
1 TTTTTTTTT
70666 GTATGAAGGA
Statistics
Matches: 43, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
19 9 0.21
20 10 0.23
21 15 0.35
22 9 0.21
ACGTcount: A:0.01, C:0.04, G:0.13, T:0.82
Consensus pattern (19 bp):
TTTTTTTTTTGTTTTTTTG
Found at i:70621 original size:8 final size:8
Alignment explanation
Indices: 70595--70651 Score: 62
Period size: 8 Copynumber: 6.8 Consensus size: 8
70585 TCTAGACCCC
70595 TTTTTTGT
1 TTTTTTGT
*
70603 TTGTTTGT
1 TTTTTTGT
70611 TTTTTT-T
1 TTTTTTGT
70618 TTTTTTGGCT
1 TTTTTT-G-T
70628 TTTTTCTGT
1 TTTTT-TGT
70637 TTTTTTGT
1 TTTTTTGT
70645 TGTTTTT
1 T-TTTTT
70652 CTTAGTTTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
7 7 0.17
8 16 0.38
9 11 0.26
10 7 0.17
11 1 0.02
ACGTcount: A:0.00, C:0.04, G:0.14, T:0.82
Consensus pattern (8 bp):
TTTTTTGT
Found at i:70641 original size:11 final size:10
Alignment explanation
Indices: 70595--70667 Score: 67
Period size: 10 Copynumber: 7.1 Consensus size: 10
70585 TCTAGACCCC
70595 TTTTTTGTTTG
1 TTTTTT-TTTG
70606 TTTGTTTTTT-
1 TTT-TTTTTTG
*
70616 TTTTTTTTGG
1 TTTTTTTTTG
* *
70626 CTTTTTTCTG
1 TTTTTTTTTG
70636 TTTTTTTGTTG
1 TTTTTTT-TTG
* *
70647 TTTTTCTTAG
1 TTTTTTTTTG
70657 TTTTTTTTTG
1 TTTTTTTTTG
70667 T
1 T
70668 ATGAAGGATG
Statistics
Matches: 49, Mismatches: 10, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
9 5 0.10
10 27 0.55
11 14 0.29
12 3 0.06
ACGTcount: A:0.01, C:0.04, G:0.14, T:0.81
Consensus pattern (10 bp):
TTTTTTTTTG
Found at i:72917 original size:15 final size:16
Alignment explanation
Indices: 72891--72920 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
72881 TTAAAGGATG
72891 ACCAAGCACTGGCGGT
1 ACCAAGCACTGGCGGT
72907 ACCAA-CACTGGCGG
1 ACCAAGCACTGGCGG
72921 GTTTGATAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.27, C:0.33, G:0.30, T:0.10
Consensus pattern (16 bp):
ACCAAGCACTGGCGGT
Found at i:76166 original size:20 final size:20
Alignment explanation
Indices: 76140--76194 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
76130 AAAAAGACAG
* *
76140 AATGTATCGATACATTCATA
1 AATGTATCAATACATTCAAA
* *
76160 CATGTATCAATACATTGAAA
1 AATGTATCAATACATTCAAA
76180 AATGTATCAATACAT
1 AATGTATCAATACAT
76195 CTGGGTAAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.44, C:0.15, G:0.09, T:0.33
Consensus pattern (20 bp):
AATGTATCAATACATTCAAA
Found at i:80207 original size:27 final size:28
Alignment explanation
Indices: 80150--80209 Score: 74
Period size: 27 Copynumber: 2.2 Consensus size: 28
80140 GTAACAAGTT
*
80150 TAAA-AATGGGGTTGGAGTATTCCCTCG
1 TAAATAATGGGGTTAGAGTATTCCCTCG
80177 -AAATAATGGGGTTAGAGTA-TCCCT-G
1 TAAATAATGGGGTTAGAGTATTCCCTCG
80202 ATAAATAA
1 -TAAATAA
80210 AATTTTGATA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
25 1 0.03
26 8 0.28
27 20 0.69
ACGTcount: A:0.35, C:0.12, G:0.25, T:0.28
Consensus pattern (28 bp):
TAAATAATGGGGTTAGAGTATTCCCTCG
Found at i:80913 original size:20 final size:20
Alignment explanation
Indices: 80875--80918 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
80865 CACTTTCAAA
80875 GAAAAATGTTATAAAATTTAT
1 GAAAAATGTTATAAAATTT-T
**
80896 GAAAAATGTT-TAGTATTTT
1 GAAAAATGTTATAAAATTTT
80915 GAAA
1 GAAA
80919 TGATTTTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.24
20 6 0.29
21 10 0.48
ACGTcount: A:0.48, C:0.00, G:0.14, T:0.39
Consensus pattern (20 bp):
GAAAAATGTTATAAAATTTT
Found at i:83914 original size:155 final size:154
Alignment explanation
Indices: 83384--84312 Score: 780
Period size: 156 Copynumber: 6.0 Consensus size: 154
83374 TAAGTTCAAG
* * * *
83384 AAAAATTACGAAAATGCCCCTATA-GGATACCCTCGACATAGAAGTA-CCC-GATACCCTTAAAG
1 AAAAATTACGAAAATGCCTCTA-AGGGATACCTTCGACGTAAAAGTATCCCGGA-ACCCTTAAAG
* * * * * * * *
83446 GACTTAAAAATGAATATAAAAGGGATGAACCTATCCTAAAGACCCACCTTTGACATAAAAGCGGA
64 GACTTAAAAAGGATTAGAAAAGGGATGAACCTATCCTAAATATCTACCTTCGGCATAAAAGCGGA
* * *
83511 CTTGATGATAACCTAGGACTCGATTCTA
129 C-CGGTG-TAACCTAGGACTCGGTTCTA
* * * * ** *
83539 AAAAATTACCAAAATACCCCT-AGGGGTACCTTCGACGTAAAAGTA-CCCAACAACCC-TAAAGA
1 AAAAATTACGAAAATGCCTCTAAGGGATACCTTCGACGTAAAAGTATCCC-GGAACCCTTAAAGG
* * *
83601 ACTTAAAGAGGATTAGAAAAGGGATGAAGCTATCCTAAATATCTACCTTCGGCA-CAAAGCGGAC
65 ACTTAAAAAGGATTAGAAAAGGGATGAACCTATCCTAAATATCTACCTTCGGCATAAAAGCGGAC
* * * *
83665 CAAGTGATGA-CTAGGAGTTGGTTCTA
130 C-GGTG-TAACCTAGGACTCGGTTCTA
* * *
83691 GAAAATTACGAAAATG-CTCCTTCAA-GTATACCTAT-GACGTAAAAGTATCTCGGAACCCTTAA
1 AAAAATTACGAAAATGCCT-C-T-AAGGGATACCT-TCGACGTAAAAGTATCCCGGAACCCTTAA
* * ** *
83753 AGGACTTCAAAA-GATTAGAAAATGGG-TGAACCTTTCCTAAATATCTACCTTCAACATAAAATC
62 AGGACTTAAAAAGGATTAGAAAA-GGGATGAACCTATCCTAAATATCTACCTTCGGCATAAAAGC
* * *
83816 AGACTCGGTAGTAACTTAGGCCTCGGTTCTA
126 GGAC-CGGT-GTAACCTAGGACTCGGTTCTA
* * *
83847 AAAAATTACGAAAATGCCTCTAAGGGATAGCTTCGACGTGAAAGTATCCCGGTACCCTTAAAGGA
1 AAAAATTACGAAAATGCCTCTAAGGGATACCTTCGACGTAAAAGTATCCCGGAACCCTTAAAGGA
* *
83912 CTTAAAAAGGATTTTA-AAAAGGGATGAACCTATCCTAAATATCTACCTTTGGCGA-AAAAGTGG
66 CTTAAAAAGGA--TTAGAAAAGGGATGAACCTATCCTAAATATCTACCTTCGGC-ATAAAAGCGG
* * ** *
83975 ACAAGGTG-ACGACCTAGGAGTTAGTTTTA
128 AC-CGGTGTA--ACCTAGGACTCGGTTCTA
* * * * * *
84004 GAAAATTATGAAAATACCTTTACGGGTATACCTTCGACGTAAAAGTATCCCGACAACCC-TAAAG
1 AAAAATTACGAAAATGCCTCTAAGGG-ATACCTTCGACGTAAAAGTATCCCG-GAACCCTTAAAG
* * *
84068 GACTTAAAAA-GATTAGAAAATGGG-TGAACCTATGCTAAATATCTACCTTTGGCATAAAAACGG
64 GACTTAAAAAGGATTAGAAAA-GGGATGAACCTATCCTAAATATCTACCTTCGGCATAAAAGCGG
* * * *
84131 ACCTGATGGTAACCTAGAACTCAGTTCTG
128 ACC-GGT-GTAACCTAGGACTCGGTTCTA
* * * * * ** *
84160 AAAAATTACAAAAATGCTTCTAAGGGATACCTTTGACATGAAAGTATCCTAGTACCCTTAAAGGA
1 AAAAATTACGAAAATGCCTCTAAGGGATACCTTCGACGTAAAAGTATCCCGGAACCCTTAAAGGA
* ** * *
84225 CTTTAAAAGGATTTTAAAAAGGATGAACCTATCCTAAATATCTACCTTCGGCATAAAAGTGGACT
66 CTTAAAAAGGATTAGAAAAGGGATGAACCTATCCTAAATATCTACCTTCGGCATAAAAGCGGAC-
* *
84290 CGGTGGTTACCTAGGACTTGGTT
130 CGGT-GTAACCTAGGACTCGGTT
84313 TTGTAACAAA
Statistics
Matches: 617, Mismatches: 119, Indels: 75
0.76 0.15 0.09
Matches are distributed among these distances:
151 1 0.00
152 27 0.04
153 16 0.03
154 136 0.22
155 136 0.22
156 173 0.28
157 81 0.13
158 43 0.07
159 4 0.01
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.25
Consensus pattern (154 bp):
AAAAATTACGAAAATGCCTCTAAGGGATACCTTCGACGTAAAAGTATCCCGGAACCCTTAAAGGA
CTTAAAAAGGATTAGAAAAGGGATGAACCTATCCTAAATATCTACCTTCGGCATAAAAGCGGACC
GGTGTAACCTAGGACTCGGTTCTA
Found at i:84047 original size:313 final size:310
Alignment explanation
Indices: 83436--84288 Score: 1010
Period size: 313 Copynumber: 2.7 Consensus size: 310
83426 AGTACCCGAT
* * * * *
83436 ACCCTTAAAGGACTTAAAAATGAATATAAAA-GGGATGAACCTATCCTAAAGACCCACCTTTGAC
1 ACCCTTAAAGGACTTAAAAA-GATTAGAAAATGGG-TGAACCTATCCTAAATATCTACCTTTGAC
* * * * * *
83500 ATAAAAGCGGACTTGATGATAACCTAGGACTCGATTCTAAAAAATTACCAAAATACCCCT-AGGG
64 ATAAAAACGGACTCGATG-TAACCTAGGACTCGGTTCTAAAAAATTACAAAAATGCCTCTAAGGG
* * ** * *
83564 GTACCTTCGACGTAAAAGTA-CCCAACAACCC-TAAAGAACTTAAAGAGGA--TTAGAAAAGGGA
128 ATACCTTCGACGTGAAAGTATCCC-AGTACCCTTAAAGGACTTAAAAAGGATTTTA-AAAAGGGA
* * * * *
83625 TGAAGCTATCCTAAATATCTACCTTCGGCACAAAGCGGACCAAGTGATGACTAGGAGTTGGTTCT
191 TGAACCTATCCTAAATATCTACCTTCGGCAAAAAGTGGA-CAAGTGACGACTAGGAGTTAGTTCT
* * *
83690 AGAAAATTACGAAAATGCTCCTTCAAGTATACCTATGACGTAAAAGTATCTCG-GA
255 AGAAAATTACGAAAATACTCCTTCAAGTATACCTATGACGTAAAAGTATCCCGACA
* * **
83745 ACCCTTAAAGGACTTCAAAAGATTAGAAAATGGGTGAACCTTTCCTAAATATCTACCTTCAACAT
1 ACCCTTAAAGGACTTAAAAAGATTAGAAAATGGGTGAACCTATCCTAAATATCTACCTTTGACAT
* * * * * *
83810 AAAATCAGACTCGGTAGTAACTTAGGCCTCGGTTCTAAAAAATTACGAAAATGCCTCTAAGGGAT
66 AAAAACGGACTCGAT-GTAACCTAGGACTCGGTTCTAAAAAATTACAAAAATGCCTCTAAGGGAT
* *
83875 AGCTTCGACGTGAAAGTATCCCGGTACCCTTAAAGGACTTAAAAAGGATTTTAAAAAGGGATGAA
130 ACCTTCGACGTGAAAGTATCCCAGTACCCTTAAAGGACTTAAAAAGGATTTTAAAAAGGGATGAA
* *
83940 CCTATCCTAAATATCTACCTTTGGCGAAAAAGTGGACAAGGTGACGACCTAGGAGTTAGTTTTAG
195 CCTATCCTAAATATCTACCTTCGGC-AAAAAGTGGACAA-GTGACGA-CTAGGAGTTAGTTCTAG
* * **
84005 AAAATTATGAAAATAC-CTTTACGGGTATACCT-TCGACGTAAAAGTATCCCGACA
257 AAAATTACGAAAATACTCCTT-CAAGTATACCTAT-GACGTAAAAGTATCCCGACA
* *
84059 ACCC-TAAAGGACTTAAAAAGATTAGAAAATGGGTGAACCTATGCTAAATATCTACCTTTGGCAT
1 ACCCTTAAAGGACTTAAAAAGATTAGAAAATGGGTGAACCTATCCTAAATATCTACCTTTGACAT
* * * *
84123 AAAAACGGAC-CTGATGGTAACCTAGAACTCAGTTCTGAAAAATTACAAAAATGCTTCTAAGGGA
66 AAAAACGGACTC-GAT-GTAACCTAGGACTCGGTTCTAAAAAATTACAAAAATGCCTCTAAGGGA
* * * *
84187 TACCTTTGACATGAAAGTATCCTAGTACCCTTAAAGGACTTTAAAAGGATTTTAAAAA-GGATGA
129 TACCTTCGACGTGAAAGTATCCCAGTACCCTTAAAGGACTTAAAAAGGATTTTAAAAAGGGATGA
84251 ACCTATCCTAAATATCTACCTTCGGCATAAAAGTGGAC
194 ACCTATCCTAAATATCTACCTTCGGCA-AAAAGTGGAC
84289 TCGGTGGTTA
Statistics
Matches: 464, Mismatches: 65, Indels: 27
0.83 0.12 0.05
Matches are distributed among these distances:
308 79 0.17
309 48 0.10
310 19 0.04
311 39 0.08
312 63 0.14
313 211 0.45
314 5 0.01
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.25
Consensus pattern (310 bp):
ACCCTTAAAGGACTTAAAAAGATTAGAAAATGGGTGAACCTATCCTAAATATCTACCTTTGACAT
AAAAACGGACTCGATGTAACCTAGGACTCGGTTCTAAAAAATTACAAAAATGCCTCTAAGGGATA
CCTTCGACGTGAAAGTATCCCAGTACCCTTAAAGGACTTAAAAAGGATTTTAAAAAGGGATGAAC
CTATCCTAAATATCTACCTTCGGCAAAAAGTGGACAAGTGACGACTAGGAGTTAGTTCTAGAAAA
TTACGAAAATACTCCTTCAAGTATACCTATGACGTAAAAGTATCCCGACA
Found at i:85116 original size:132 final size:129
Alignment explanation
Indices: 84970--85219 Score: 329
Period size: 132 Copynumber: 1.9 Consensus size: 129
84960 TAATTATTTC
**
84970 AAAAAAATCATTTCGTACCTTAACGGATACCCGAAAAGATATGAAAAGATTTTCGAAATATTCTA
1 AAAAAAATCATTTCGTACCTTAACGGATACCCGAAAAGATACAAAAAG-TTTTCGAAATATTCTA
* * * * *
85035 TACCCCTACAGATGCCTATAGGAATATAAAAGACTTGAAAATAATTGATATTTATTTATATTTGG
65 GA-CCCTACAGATACCTATAAGAATATAAAAGA-TTAAAAATAATTAATATTTATTTATATTTGG
85100 AA
128 AA
* * * * * *
85102 AAAAAAATCATTTCGTACCTTAATGGATACCTGAAAAGATACAAAAAGTTTTTGATATCTTTTAG
1 AAAAAAATCATTTCGTACCTTAACGGATACCCGAAAAGATACAAAAAGTTTTCGAAATATTCTAG
** *
85167 ACCCTATGGATACCTATAAGAATATAAAAGATTAAAAATGATTAATATTTATT
66 ACCCTACAGATACCTATAAGAATATAAAAGATTAAAAATAATTAATATTTATT
85220 GTAATTAACG
Statistics
Matches: 102, Mismatches: 16, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
129 19 0.19
130 26 0.25
131 13 0.13
132 44 0.43
ACGTcount: A:0.43, C:0.12, G:0.12, T:0.32
Consensus pattern (129 bp):
AAAAAAATCATTTCGTACCTTAACGGATACCCGAAAAGATACAAAAAGTTTTCGAAATATTCTAG
ACCCTACAGATACCTATAAGAATATAAAAGATTAAAAATAATTAATATTTATTTATATTTGGAA
Found at i:86200 original size:23 final size:23
Alignment explanation
Indices: 86165--86213 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
86155 TTTTCTCCCA
* *
86165 TTTCTTCTATTTTCTCTTGCTTT
1 TTTCCTCTATTTTCTCTGGCTTT
* *
86188 TTTCCTCTCTTTTCTCTGGTTTT
1 TTTCCTCTATTTTCTCTGGCTTT
86211 TTT
1 TTT
86214 TTCTAGCAGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.02, C:0.22, G:0.06, T:0.69
Consensus pattern (23 bp):
TTTCCTCTATTTTCTCTGGCTTT
Found at i:87078 original size:166 final size:165
Alignment explanation
Indices: 86853--87269 Score: 487
Period size: 166 Copynumber: 2.5 Consensus size: 165
86843 ACCACATTTT
* * * * * * * *
86853 GAAAAAATAAGAATTTCGAGGAGAAAAATCAAAAACTCATGATAATGGATTTTTTTTTTAAATTG
1 GAAAAAA-GAGAATTTCAAAGA-AAAAATCCAAAACTCATGAAAATGAATTTATTTTTTAAAATG
* * ** * * *
86918 AATTAATAGGAAATAAATAATTGTATTTTATGCCTTTTGAAAATTGAAAACTGAGAAAAA-TCCC
64 AATTAACATGAAATAAATAATAATATTTGATGACTTTTAAAAATTGAAAACTGAGAAAAATTCCC
* * *
86982 GTCGAAAA-ATTTTATGGAGTAAAAAACACCGTATTTAG
129 -TC-AAAACAATTTATGAAGTAAAAAACAACGTATTTAG
* * * * * *
87020 GAAAAAAAGGGTATTTCAAAGAAAAAATCCAAAACACATGAAAATGAACTTATTTTTTAGAACTA
1 G-AAAAAAGAGAATTTCAAAGAAAAAATCCAAAACTCATGAAAATGAATTTATTTTTTA-AAATG
** *
87085 AATTAACATGAAATAAATTGTAATATTTGATGACTTTTAAAAATTGAAAATTGAGAAAAATTCCC
64 AATTAACATGAAATAAATAATAATATTTGATGACTTTTAAAAATTGAAAACTGAGAAAAATTCCC
* *
87150 TCAAAACAATTTATGAAGTAGAAAACAATGTATTTAG
129 TCAAAACAATTTATGAAGTAAAAAACAACGTATTTAG
*
87187 GAAAAAAGAGAATTTCAAAGAAAAAATTCAAAACTCATGAAAATGAATTTATTTTTTAAAAATGA
1 GAAAAAAGAGAATTTCAAAGAAAAAATCCAAAACTCATGAAAATGAATTTATTTTTT-AAAATGA
87252 ATTAACATGAAATAAATA
65 ATTAACATGAAATAAATA
87270 TTTGATGAAT
Statistics
Matches: 209, Mismatches: 36, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
166 107 0.51
167 92 0.44
168 10 0.05
ACGTcount: A:0.49, C:0.08, G:0.13, T:0.30
Consensus pattern (165 bp):
GAAAAAAGAGAATTTCAAAGAAAAAATCCAAAACTCATGAAAATGAATTTATTTTTTAAAATGAA
TTAACATGAAATAAATAATAATATTTGATGACTTTTAAAAATTGAAAACTGAGAAAAATTCCCTC
AAAACAATTTATGAAGTAAAAAACAACGTATTTAG
Found at i:87130 original size:167 final size:159
Alignment explanation
Indices: 86941--87307 Score: 448
Period size: 166 Copynumber: 2.3 Consensus size: 159
86931 TAAATAATTG
* * * * *
86941 TATTTTATGCCTTTTGAAAATTGAAAACTGAGAAAAATCCCGTCGAAAA-ATTTTATGGAGTAAA
1 TATTTGATGACTTTTAAAAATTGAAAACTGAGAAAAATCCC-TC-AAAACAATTTATGAAGTAAA
* * *
87005 AAACACCGTATTTAGGAAAAAAAGGGTATTTCAAAGAAAAAATCCAAAACACATGAAAATGAACT
64 AAACAACGTATTTAGG-AAAAAAGAGAATTTCAAAGAAAAAATCCAAAACACATGAAAATGAACT
* *
87070 TATTTTTTAGAACTAAATTAACATGAAATAAATTGTAA
128 TATTTTTTAAAAATAAATTAACATGAAAT--A----AA
* *
87108 TATTTGATGACTTTTAAAAATTGAAAATTGAGAAAAATTCCCTCAAAACAATTTATGAAGTAGAA
1 TATTTGATGACTTTTAAAAATTGAAAACTGAGAAAAA-TCCCTCAAAACAATTTATGAAGTAAAA
* * * *
87173 AACAATGTATTTAGGAAAAAAGAGAATTTCAAAGAAAAAATTCAAAACTCATGAAAATGAATTTA
65 AACAACGTATTTAGGAAAAAAGAGAATTTCAAAGAAAAAATCCAAAACACATGAAAATGAACTTA
*
87238 TTTTTTAAAAATGAATTAACATGAAATAAA
130 TTTTTTAAAAATAAATTAACATGAAATAAA
* * **
87268 TATTTGATGAATTTTAAAAATTAAAAACCAAGAAAAATCC
1 TATTTGATGACTTTTAAAAATTGAAAACTGAGAAAAATCC
87308 TCTTGAAAAA
Statistics
Matches: 176, Mismatches: 22, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
159 3 0.02
160 34 0.19
164 1 0.01
166 73 0.41
167 61 0.35
168 4 0.02
ACGTcount: A:0.50, C:0.09, G:0.12, T:0.29
Consensus pattern (159 bp):
TATTTGATGACTTTTAAAAATTGAAAACTGAGAAAAATCCCTCAAAACAATTTATGAAGTAAAAA
ACAACGTATTTAGGAAAAAAGAGAATTTCAAAGAAAAAATCCAAAACACATGAAAATGAACTTAT
TTTTTAAAAATAAATTAACATGAAATAAA
Found at i:87386 original size:159 final size:162
Alignment explanation
Indices: 87014--87389 Score: 401
Period size: 166 Copynumber: 2.3 Consensus size: 162
87004 AAAACACCGT
* * *
87014 ATTTAGGAAAAAAAGGGTATTTCAAAGAAAAAATCCAAAAC-ACATGAAAATGAACTTATTTTTT
1 ATTTA-GAAAAAAAGAGAATTTCAAAGAAAAAATTCAAAACTA-ATGAAAATGAACTTATTTTTT
* * * * ***
87078 AGAACTAAATTAACATGAAATAAATTGTAATATTTGATGACTTTTAAAAATTGAAAATTGAGAAA
64 AAAAATAAATTAACATGAAAT-AA---TAATATTTGATGAATTTTAAAAATTAAAAACCAAGAAA
* * *
87143 AATTCCCTCAAAACAATTTATGAAGTAGAAAACAATGT
125 AATTCCCTCAAAACAATTCAAGAAGTAGAAAACAATGA
* * *
87181 ATTTAGGAAAAAAGAGAATTTCAAAGAAAAAATTCAAAACTCATGAAAATGAATTTATTTTTTAA
1 ATTTAGAAAAAAAGAGAATTTCAAAGAAAAAATTCAAAACTAATGAAAATGAACTTATTTTTTAA
*
87246 AAATGAATTAACATGAAAT-A-AATATTTGATGAATTTTAAAAATTAAAAACCAAGAAAAA-TCC
66 AAATAAATTAACATGAAATAATAATATTTGATGAATTTTAAAAATTAAAAACCAAGAAAAATTCC
* **
87308 TCTTGAAAA-AA-TCACAG-AGTAGAAAACTCTGA
131 -C-TCAAAACAATTCA-AGAAGTAGAAAACAATGA
*
87340 ATTTCGAAAAAAA-AGAAATTTC-AAGAAAAAATTCAAAAACTAATGAAAAT
1 ATTTAGAAAAAAAGAG-AATTTCAAAGAAAAAATTC-AAAACTAATGAAAAT
87390 AAAAGCATTT
Statistics
Matches: 180, Mismatches: 23, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
158 14 0.08
159 48 0.27
160 38 0.21
161 5 0.03
164 1 0.01
166 69 0.38
167 5 0.03
ACGTcount: A:0.53, C:0.09, G:0.11, T:0.28
Consensus pattern (162 bp):
ATTTAGAAAAAAAGAGAATTTCAAAGAAAAAATTCAAAACTAATGAAAATGAACTTATTTTTTAA
AAATAAATTAACATGAAATAATAATATTTGATGAATTTTAAAAATTAAAAACCAAGAAAAATTCC
CTCAAAACAATTCAAGAAGTAGAAAACAATGA
Found at i:88373 original size:42 final size:42
Alignment explanation
Indices: 88330--89106 Score: 352
Period size: 42 Copynumber: 18.3 Consensus size: 42
88320 AAAAGAATCC
* * *
88330 CGGGTCTGAGCCGATAGGCAGACGAATGATGGAAAAGTCTCC
1 CGGGTCTAAGCCGATGGGCAGACGAATGATGGAAAAGTCTCT
* * * * * *
88372 CGGGCCTAAGCCGATAGGAAGATGAAAGAT-GAAGAAGTCACT
1 CGGGTCTAAGCCGATGGGCAGACGAATGATGGAA-AAGTCTCT
* * * **
88414 CGAGTCTAAGCCGATGGGTAGATC-ATTGA-CAAACGAAGTCTCT
1 CGGGTCTAAGCCGATGGGCAGA-CGAATGATGGAA--AAGTCTCT
* * *
88457 TGGGTCTGAA-CCGATGGGCAGATGAATGGTGGAAAAGTCTCT
1 CGGGTCT-AAGCCGATGGGCAGACGAATGATGGAAAAGTCTCT
* * * * * *
88499 CGGGTCTATGCCGACGAGCAGATGATTAATGGAAAAGTCTCT
1 CGGGTCTAAGCCGATGGGCAGACGAATGATGGAAAAGTCTCT
* * * * * *
88541 CGAGTCTAAGCTGACGGGCAGATGATTGATGAAAAAGTCTCT
1 CGGGTCTAAGCCGATGGGCAGACGAATGATGGAAAAGTCTCT
* *** *** *
88583 CGGGTCTAAGCCGACGAATAGAC-AATTGACAAAGAAAGTCTTT
1 CGGGTCTAAGCCGATGGGCAGACGAA-TGATGGA-AAAGTCTCT
* * * *
88626 CGGGTCTAAGTCAACGGGCAGACGATTGATGGAAAAGTCTCT
1 CGGGTCTAAGCCGATGGGCAGACGAATGATGGAAAAGTCTCT
* * * * *
88668 CGAGTCTAAGCCAACGAGCAGACGATTGATGGAAAAGTCTC-
1 CGGGTCTAAGCCGATGGGCAGACGAATGATGGAAAAGTCTCT
* * *
88709 CTAGGTCTAAGCCGACGGGCAGAC-AATTGAT-AAAGGAAGTCTCT
1 C-GGGTCTAAGCCGATGGGCAGACGAA-TGATGGAA--AAGTCTCT
* * * * * ** *
88753 CGAGTTTGAGCCGATGGGCAAATGAATGACAGAAAAGTCTCC
1 CGGGTCTAAGCCGATGGGCAGACGAATGATGGAAAAGTCTCT
* * * *** * *
88795 CAGGTCTAAGCCGACGGGCAGA-TAATTGACAAAAAAAGTTTCC
1 CGGGTCTAAGCCGATGGGCAGACGAA-TGA-TGGAAAAGTCTCT
* * * *
88838 CGGGTTTAAGCCGATGGGCAGACGATTGATTGAAAAGTCTCC
1 CGGGTCTAAGCCGATGGGCAGACGAATGATGGAAAAGTCTCT
* * * * * * * * *
88880 CAGGTCTAAGTCGATAGGCAAACGATTCAT-AAAGGAAGTATCC
1 CGGGTCTAAGCCGATGGGCAGACGAATGATGGAA--AAGTCTCT
* * * * * *** *
88923 CGAGTCTAAGCTGATGGGTAGATGATTGACAAAGAAAGTCTCC
1 CGGGTCTAAGCCGATGGGCAGACGAATGATGGA-AAAGTCTCT
*** * ** * * *
88966 CTATTCTAAGCCGACGATCAAACCATTGATGGAAAAGTCTCT
1 CGGGTCTAAGCCGATGGGCAGACGAATGATGGAAAAGTCTCT
* * * * *
89008 CGGGTCTAAGCTGACGGGCAAACGATTGATAGAGAAAGTCTCT
1 CGGGTCTAAGCCGATGGGCAGACGAATGATGGA-AAAGTCTCT
* * * *
89051 TGGGTCTAAGCCGATGAGCAGAC-AATTGATGGAAAGGTCTCC
1 CGGGTCTAAGCCGATGGGCAGACGAA-TGATGGAAAAGTCTCT
* *
89093 CAGGTCTAAACCGA
1 CGGGTCTAAGCCGA
89107 CGGGTAGATA
Statistics
Matches: 560, Mismatches: 148, Indels: 54
0.73 0.19 0.07
Matches are distributed among these distances:
41 13 0.02
42 332 0.59
43 201 0.36
44 13 0.02
45 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.28, T:0.21
Consensus pattern (42 bp):
CGGGTCTAAGCCGATGGGCAGACGAATGATGGAAAAGTCTCT
Found at i:88569 original size:127 final size:127
Alignment explanation
Indices: 88331--88569 Score: 295
Period size: 127 Copynumber: 1.9 Consensus size: 127
88321 AAAGAATCCC
* *
88331 GGGTCTGAGCCGATAGGCAGACGAATGATGGAAAAGTCTCCCGGGCCTAAGCCGATAGGAAGATG
1 GGGTCTGAACCGATAGGCAGACGAATGATGGAAAAGTCTCCCGGGCCTAAGCCGAGAGGAAGATG
* *
88396 AAAGATGAAGAAGTCACTCGAGTCTAAGCCGATGGGTAGATCATTGACAAACGAAGTCTCTT
66 AAAGATGAAGAAGTCACTCGAGTCTAAGCCGACGGGCAGATCATTGACAAACGAAGTCTCTT
* * * * * * *
88458 GGGTCTGAACCGATGGGCAGATGAATGGTGGAAAAGTCTCTCGGGTCTATGCCGACGA-GCAGAT
1 GGGTCTGAACCGATAGGCAGACGAATGATGGAAAAGTCTCCCGGGCCTAAGCCGA-GAGGAAGAT
* * * *
88522 GATTA-ATGGAA-AAGTCTCTCGAGTCTAAGCTGACGGGCAGATGATTGA
65 GA-AAGAT-GAAGAAGTCACTCGAGTCTAAGCCGACGGGCAGATCATTGA
88570 TGAAAAAGTC
Statistics
Matches: 94, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
127 89 0.95
128 5 0.05
ACGTcount: A:0.30, C:0.18, G:0.31, T:0.21
Consensus pattern (127 bp):
GGGTCTGAACCGATAGGCAGACGAATGATGGAAAAGTCTCCCGGGCCTAAGCCGAGAGGAAGATG
AAAGATGAAGAAGTCACTCGAGTCTAAGCCGACGGGCAGATCATTGACAAACGAAGTCTCTT
Found at i:88614 original size:169 final size:168
Alignment explanation
Indices: 88347--88766 Score: 436
Period size: 169 Copynumber: 2.5 Consensus size: 168
88337 GAGCCGATAG
* * * * ** * ** * *
88347 GCAGACGAATGATGGAAAAGTCTCCCGGGCCTAAGCCGATAGGAAGATGAAAGATGAAGAAGTCA
1 GCAGACGATTAATGGAAAAGTCT-CCGAGTCTAAGCCGACGGGCAGATGATTGATGAAAAAGTCT
* ** * *
88412 CTCGAGTCTAAGCCGATGGGTAGATCATTGACAAACG-AAGTCTCTT-GGGTCTGAA-CCGATGG
65 CTCGAGTCTAAGCCGACGAATAGATCATTGACAAA-GAAAGTCT-TTCGGGTCT-AAGCCAACGG
* * * * *
88474 GCAGATGAATGGTGGAAAAGTCTCTCGGGTCTATGCCGACGA
127 GCAGACGAATGATGGAAAAGTCTCTCGAGTCTAAGCCAACGA
* *
88516 GCAGATGATTAATGGAAAAGTCTCTCGAGTCTAAGCTGACGGGCAGATGATTGATGAAAAAGTCT
1 GCAGACGATTAATGGAAAAGTCTC-CGAGTCTAAGCCGACGGGCAGATGATTGATGAAAAAGTCT
* *
88581 CTCGGGTCTAAGCCGACGAATAGA-CAATTGACAAAGAAAGTCTTTCGGGTCTAAGTCAACGGGC
65 CTCGAGTCTAAGCCGACGAATAGATC-ATTGACAAAGAAAGTCTTTCGGGTCTAAGCCAACGGGC
*
88645 AGACGATTGATGGAAAAGTCTCTCGAGTCTAAGCCAACGA
129 AGACGAATGATGGAAAAGTCTCTCGAGTCTAAGCCAACGA
* * **
88685 GCAGACGATTGATGGAAAAGTCTCCTAGGTCTAAGCCGACGGGCAGACAATTGAT-AAAGGAAGT
1 GCAGACGATTAATGGAAAAGTCTCCGA-GTCTAAGCCGACGGGCAGATGATTGATGAAA--AAGT
* *
88749 CTCTCGAGTTTGAGCCGA
63 CTCTCGAGTCTAAGCCGA
88767 TGGGCAAATG
Statistics
Matches: 208, Mismatches: 35, Indels: 15
0.81 0.14 0.06
Matches are distributed among these distances:
168 12 0.06
169 177 0.85
170 19 0.09
ACGTcount: A:0.32, C:0.19, G:0.29, T:0.21
Consensus pattern (168 bp):
GCAGACGATTAATGGAAAAGTCTCCGAGTCTAAGCCGACGGGCAGATGATTGATGAAAAAGTCTC
TCGAGTCTAAGCCGACGAATAGATCATTGACAAAGAAAGTCTTTCGGGTCTAAGCCAACGGGCAG
ACGAATGATGGAAAAGTCTCTCGAGTCTAAGCCAACGA
Found at i:88621 original size:127 final size:125
Alignment explanation
Indices: 88490--89108 Score: 382
Period size: 127 Copynumber: 4.9 Consensus size: 125
88480 GAATGGTGGA
* * *
88490 AAAGTCTCTCGGGTCTATGCCGACGAGCAGATGATTAATGGAAAAGTCTCTCGAGTCTAAGCTGA
1 AAAGTCTCTCGGGTCTA-GCCGACGGGCAGATGATTGATGGAAAAGTCTCTCGAGTCTAAGCCGA
*
88555 CGGGCAGATGATTGATGAAAAAGTCTCTCGGGTCTAAGCCGACGAATAGACAATTGACAAAG
65 CGGGCAGATGATTGATGAAAAAGTCTC-CGGGTCTAAGCCGACGAACAGACAATTGACAAAG
* * * * *
88617 AAAGTCTTTCGGGTCTAAGTCAACGGGCAGACGATTGATGGAAAAGTCTCTCGAGTCTAAGCCAA
1 AAAGTCTCTCGGGTCT-AGCCGACGGGCAGATGATTGATGGAAAAGTCTCTCGAGTCTAAGCCGA
* * * * ** *
88682 CGAGCAGACGATTGATGGAAAAGTCTCCTAGGTCTAAGCCGACGGGCAGACAATTGATAAAG
65 CGGGCAGATGATTGATGAAAAAGTCTCC-GGGTCTAAGCCGACGAACAGACAATTGACAAAG
* * * * * * ** *
88744 GAAGTCTCTCGAGTTTGAGCCGATGGGCAAATGAATGACAGAAAAGTCTC-CCAGGTCTAAGCCG
1 AAAGTCTCTCGGGTCT-AGCCGACGGGCAGATGATTGATGGAAAAGTCTCTCGA-GTCTAAGCCG
* ** * * * ** * ***
88808 ACGGGCAGATAATTGACAAAAAAAGTTTCCCGGGTTTAAGCCGATGGGCAGACGATTGATTGA-
64 ACGGGCAGATGATTGA-TGAAAAAGTCT-CCGGGTCTAAGCCGACGAACAGACAATTGACAAAG
* * * ** * * * * * * *
88871 AAAGTCTCCCAGGTCTAAGTCGATAGGCAAACGATTCAT-AAAGGAAGTATCCCGAGTCTAAGCT
1 AAAGTCTCTCGGGTCT-AGCCGACGGGCAGATGATTGATGGAA--AAGTCTCTCGAGTCTAAGCC
* * ** *** * * * ***
88935 GATGGGTAGATGATTGACAAAGAAAGTCTCCCTATTCTAAGCCGACGATCAAACCATTGATGGA-
63 GACGGGCAGATGATTGATGAA-AAAGTCT-CCGGGTCTAAGCCGACGAACAGACAATTGACAAAG
* * * * * *
88999 AAAGTCTCTCGGGTCTAAGCTGACGGGCAAACGATTGATAGAGAAAGTCTCTTGGGTCTAAGCCG
1 AAAGTCTCTCGGGTCT-AGCCGACGGGCAGATGATTGATGGA-AAAGTCTCTCGAGTCTAAGCCG
* * ** * * * *
89064 ATGAGCAGACAATTGATGGAAAGGTCTCCCAGGTCTAAACCGACG
64 ACGGGCAGATGATTGATGAAAAAGTCT-CCGGGTCTAAGCCGACG
89109 GGTAGATAAA
Statistics
Matches: 381, Mismatches: 100, Indels: 22
0.76 0.20 0.04
Matches are distributed among these distances:
126 5 0.01
127 216 0.57
128 154 0.40
129 5 0.01
130 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.21
Consensus pattern (125 bp):
AAAGTCTCTCGGGTCTAGCCGACGGGCAGATGATTGATGGAAAAGTCTCTCGAGTCTAAGCCGAC
GGGCAGATGATTGATGAAAAAGTCTCCGGGTCTAAGCCGACGAACAGACAATTGACAAAG
Found at i:88976 original size:128 final size:128
Alignment explanation
Indices: 88798--89079 Score: 280
Period size: 128 Copynumber: 2.2 Consensus size: 128
88788 AGTCTCCCAG
* * * * * *
88798 GTCTAAGCCGACGGGCAGATAATTGACAAAAAAAGTTTCCCGGGTTTAAGCCGATGGGCAGACGA
1 GTCTAAGCCGACGGGCAGATAATTGACAAAAAAAGTCTCCCGGATTTAAGCCGACGAGCAAACCA
* *
88863 TTGATTGAAAAGTCTCCCAGGTCTAAG-TCGATAGGCAAACGATTCATAAAGGAAGTATCCCGA
66 TTGATGGAAAAGTCTCCCAGGTCTAAGCT-GACAGGCAAACGATTCATAAAGGAAGTATCCCGA
* * * * * * *
88926 GTCTAAGCTGATGGGTAGATGATTGACAAAGAAAGTCTCCC-TATTCTAAGCCGACGATCAAACC
1 GTCTAAGCCGACGGGCAGATAATTGACAAAAAAAGTCTCCCGGATT-TAAGCCGACGAGCAAACC
* * * * * * * ** *
88990 ATTGATGGAAAAGTCTCTCGGGTCTAAGCTGACGGGCAAACGATTGATAGAGAAAGTCTCTTGG
65 ATTGATGGAAAAGTCTCCCAGGTCTAAGCTGACAGGCAAACGATTCATAAAGGAAGTATCCCGA
* * *
89054 GTCTAAGCCGATGAGCAGACAATTGA
1 GTCTAAGCCGACGGGCAGATAATTGA
89080 TGGAAAGGTC
Statistics
Matches: 122, Mismatches: 30, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
127 2 0.02
128 119 0.98
129 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.26, T:0.22
Consensus pattern (128 bp):
GTCTAAGCCGACGGGCAGATAATTGACAAAAAAAGTCTCCCGGATTTAAGCCGACGAGCAAACCA
TTGATGGAAAAGTCTCCCAGGTCTAAGCTGACAGGCAAACGATTCATAAAGGAAGTATCCCGA
Found at i:89081 original size:85 final size:84
Alignment explanation
Indices: 88330--89110 Score: 439
Period size: 85 Copynumber: 9.2 Consensus size: 84
88320 AAAAGAATCC
* ** * * * * ** *
88330 CGGGTCTGAGCCGATAGGCAGACGAATGATGGAAAAGTCTCCCGGGCCTAAGCCGATAGGAAGAT
1 CGGGTCTAAGCCGACGGGCAGACGATTGATAGAAAAGTCTCCTGGGTCTAAGCCGACGGGCAGA-
* * * *
88395 GAA-AGATGAAGAAGTCACT
65 CAATTGATGAAAAAGTCTCT
* * * * * *
88414 CGAGTCTAAGCCGATGGGTAGATC-ATTGACA-AACGAAGTCTCTTGGGTCTGAA-CCGATGGGC
1 CGGGTCTAAGCCGACGGGCAGA-CGATTGATAGAA--AAGTCTCCTGGGTCT-AAGCCGACGGGC
* * *
88476 AGATGAA-TGGTGGAAAAGTCTCT
62 AGA-CAATTGATGAAAAAGTCTCT
* * * * * * *
88499 CGGGTCTATGCCGACGAGCAGATGATTAATGGAAAAGTCT-CTCGAGTCTAAGCTGACGGGCAGA
1 CGGGTCTAAGCCGACGGGCAGACGATTGATAGAAAAGTCTCCT-GGGTCTAAGCCGACGGGCAGA
**
88563 TGATTGATGAAAAAGTCTCT
65 CAATTGATGAAAAAGTCTCT
*** * * * * * *
88583 CGGGTCTAAGCCGACGAATAGACAATTGACAAAGAAAGTCT-TTCGGGTCTAAGTCAACGGGCAG
1 CGGGTCTAAGCCGACGGGCAGACGATTGATAGA-AAAGTCTCCT-GGGTCTAAGCCGACGGGCAG
* *
88647 ACGATTGATGGAAAAGTCTCT
64 ACAATTGATGAAAAAGTCTCT
* * * * *
88668 CGAGTCTAAGCCAACGAGCAGACGATTGATGGAAAAGTCTCCTAGGTCTAAGCCGACGGGCAGAC
1 CGGGTCTAAGCCGACGGGCAGACGATTGATAGAAAAGTCTCCTGGGTCTAAGCCGACGGGCAGAC
88733 AATTGAT-AAAGGAAGTCTCT
66 AATTGATGAAA--AAGTCTCT
* * * * * * * * ** *
88753 CGAGTTTGAGCCGATGGGCAAATGAATGACAGAAAAGTCTCCCAGGTCTAAGCCGACGGGCAGAT
1 CGGGTCTAAGCCGACGGGCAGACGATTGATAGAAAAGTCTCCTGGGTCTAAGCCGACGGGCAGAC
** * *
88818 AATTGACAAAAAAAGTTTCC
66 AATTGA-TGAAAAAGTCTCT
* * * ** * ** *
88838 CGGGTTTAAGCCGATGGGCAGACGATTGATTGAAAAGTCTCCCAGGTCTAAGTCGATAGGCAAAC
1 CGGGTCTAAGCCGACGGGCAGACGATTGATAGAAAAGTCTCCTGGGTCTAAGCCGACGGGCAGAC
* * * *
88903 GATTCAT-AAAGGAAGTATCC
66 AATTGATGAAA--AAGTCTCT
* * * * * * * ** ** *
88923 CGAGTCTAAGCTGATGGGTAGATGATTGACAAAGAAAGTCTCCCT-ATTCTAAGCCGACGATCAA
1 CGGGTCTAAGCCGACGGGCAGACGATTGATAGA-AAAGTCT-CCTGGGTCTAAGCCGACGGGCAG
* *
88987 ACCATTGATGGAAAAGTCTCT
64 ACAATTGATGAAAAAGTCTCT
* * * * *
89008 CGGGTCTAAGCTGACGGGCAAACGATTGATAGAGAAAGTCTCTTGGGTCTAAGCCGATGAGCAGA
1 CGGGTCTAAGCCGACGGGCAGACGATTGATAGA-AAAGTCTCCTGGGTCTAAGCCGACGGGCAGA
* * *
89073 CAATTGATGGAAAGGTCTCC
65 CAATTGATGAAAAAGTCTCT
* *
89093 CAGGTCTAAACCGACGGG
1 CGGGTCTAAGCCGACGGG
89111 TAGATAAAAG
Statistics
Matches: 541, Mismatches: 135, Indels: 41
0.75 0.19 0.06
Matches are distributed among these distances:
83 11 0.02
84 115 0.21
85 378 0.70
86 30 0.06
87 7 0.01
ACGTcount: A:0.32, C:0.19, G:0.28, T:0.21
Consensus pattern (84 bp):
CGGGTCTAAGCCGACGGGCAGACGATTGATAGAAAAGTCTCCTGGGTCTAAGCCGACGGGCAGAC
AATTGATGAAAAAGTCTCT
Found at i:89752 original size:78 final size:79
Alignment explanation
Indices: 89651--89839 Score: 242
Period size: 78 Copynumber: 2.4 Consensus size: 79
89641 CCATTTAGTG
* *** * *
89651 TTTAGGAAGGAGGGATGCAATTGGGAATGTGTGA-GAAATGCCCC-CTTTGGCTTTATGATGCAC
1 TTTAGGAAGGAAGGATATGATTGGGAATGTGTGAGGAAATGCCCCTC-TTGGCCTTAGGATGCAC
89714 CAATATCATCTGGTA
65 CAATATCATCTGGTA
* * *
89729 -TTCGGTAAGGAAGGATATGATTGGGAATGTAT-AGGAAGTGCCCCTCTTGGCCTTAGGATGCAC
1 TTTAGG-AAGGAAGGATATGATTGGGAATGTGTGAGGAAATGCCCCTCTTGGCCTTAGGATGCAC
89792 CAATATCATCTGGTA
65 CAATATCATCTGGTA
*
89807 TTTAGGAAGGAAGGATATGATTAGGAATGTGTG
1 TTTAGGAAGGAAGGATATGATTGGGAATGTGTG
89840 GTTAGGCTGA
Statistics
Matches: 94, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
77 5 0.05
78 84 0.89
79 5 0.05
ACGTcount: A:0.28, C:0.13, G:0.30, T:0.29
Consensus pattern (79 bp):
TTTAGGAAGGAAGGATATGATTGGGAATGTGTGAGGAAATGCCCCTCTTGGCCTTAGGATGCACC
AATATCATCTGGTA
Found at i:90554 original size:53 final size:53
Alignment explanation
Indices: 90482--90696 Score: 255
Period size: 53 Copynumber: 4.2 Consensus size: 53
90472 CATTCAGTCC
* * *
90482 ATTTTTTTTACCTGTATGCCCTTTCGGGTTTTCATCTAAGCATTATCATTCTT
1 ATTTTTTTTACCTGAATGCCCTTTCGGGTTTTCATCCAAGCATTATCATTCTA
* *
90535 ATTTTTTTTACTTGAATGCCCTTTCGGGTTTTCATCCAAGCA-T-T--GTC--
1 ATTTTTTTTACCTGAATGCCCTTTCGGGTTTTCATCCAAGCATTATCATTCTA
* * *
90582 A-TTTTTTTACCTAAATGCCCTTTCGAGTTTTCATCCAAGCATTGTCATTCTA
1 ATTTTTTTTACCTGAATGCCCTTTCGGGTTTTCATCCAAGCATTATCATTCTA
* ** * *
90634 ATTTTTTTTACTTGAACACCCTTTCGGGTTTTCATCTAGGCATTATCATTCTAA
1 ATTTTTTTTACCTGAATGCCCTTTCGGGTTTTCATCCAAGCATTATCATTCT-A
90688 ATTTTTTTT
1 ATTTTTTTT
90697 TAACACATAG
Statistics
Matches: 138, Mismatches: 16, Indels: 15
0.82 0.09 0.09
Matches are distributed among these distances:
46 37 0.27
47 2 0.01
48 1 0.01
49 2 0.01
50 2 0.01
51 1 0.01
52 2 0.01
53 81 0.59
54 10 0.07
ACGTcount: A:0.20, C:0.20, G:0.11, T:0.49
Consensus pattern (53 bp):
ATTTTTTTTACCTGAATGCCCTTTCGGGTTTTCATCCAAGCATTATCATTCTA
Found at i:90587 original size:46 final size:46
Alignment explanation
Indices: 90537--90630 Score: 161
Period size: 46 Copynumber: 2.0 Consensus size: 46
90527 TCATTCTTAT
* * *
90537 TTTTTTTACTTGAATGCCCTTTCGGGTTTTCATCCAAGCATTGTCA
1 TTTTTTTACCTAAATGCCCTTTCGAGTTTTCATCCAAGCATTGTCA
90583 TTTTTTTACCTAAATGCCCTTTCGAGTTTTCATCCAAGCATTGTCA
1 TTTTTTTACCTAAATGCCCTTTCGAGTTTTCATCCAAGCATTGTCA
90629 TT
1 TT
90631 CTAATTTTTT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.19, C:0.22, G:0.13, T:0.46
Consensus pattern (46 bp):
TTTTTTTACCTAAATGCCCTTTCGAGTTTTCATCCAAGCATTGTCA
Found at i:90600 original size:99 final size:99
Alignment explanation
Indices: 90484--90683 Score: 301
Period size: 99 Copynumber: 2.0 Consensus size: 99
90474 TTCAGTCCAT
** * * *
90484 TTTTTTTACCTGTATGCCCTTTCGGGTTTTCATCTAAGCATTATCATTCTTATTTTTTTTACTTG
1 TTTTTTTACCTAAATGCCCTTTCGAGTTTTCATCCAAGCATTATCATTCTAATTTTTTTTACTTG
** *
90549 AATGCCCTTTCGGGTTTTCATCCAAGCATTGTCA
66 AACACCCTTTCGGGTTTTCATCCAAGCATTATCA
*
90583 TTTTTTTACCTAAATGCCCTTTCGAGTTTTCATCCAAGCATTGTCATTCTAATTTTTTTTACTTG
1 TTTTTTTACCTAAATGCCCTTTCGAGTTTTCATCCAAGCATTATCATTCTAATTTTTTTTACTTG
* *
90648 AACACCCTTTCGGGTTTTCATCTAGGCATTATCA
66 AACACCCTTTCGGGTTTTCATCCAAGCATTATCA
90682 TT
1 TT
90684 CTAAATTTTT
Statistics
Matches: 90, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
99 90 1.00
ACGTcount: A:0.19, C:0.21, G:0.12, T:0.47
Consensus pattern (99 bp):
TTTTTTTACCTAAATGCCCTTTCGAGTTTTCATCCAAGCATTATCATTCTAATTTTTTTTACTTG
AACACCCTTTCGGGTTTTCATCCAAGCATTATCA
Found at i:102075 original size:61 final size:61
Alignment explanation
Indices: 102000--102146 Score: 249
Period size: 61 Copynumber: 2.4 Consensus size: 61
101990 TAAGGTTTAT
*
102000 CATTGACACTAAGGTACTCGATAACAGCTTAAGACTCGATCAAATTATCCCTAAAGCTTAC
1 CATTGACACTAAGGTACCCGATAACAGCTTAAGACTCGATCAAATTATCCCTAAAGCTTAC
* *
102061 CATTAACACTAAGGTACCCGATAACAGCTTAGGACTCGATCAAATTATCCCTAAAGCTTAC
1 CATTGACACTAAGGTACCCGATAACAGCTTAAGACTCGATCAAATTATCCCTAAAGCTTAC
* *
102122 AATTGACACTAAGGCACCCGATAAC
1 CATTGACACTAAGGTACCCGATAAC
102147 TCTAAAAGGC
Statistics
Matches: 80, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 80 1.00
ACGTcount: A:0.37, C:0.26, G:0.14, T:0.24
Consensus pattern (61 bp):
CATTGACACTAAGGTACCCGATAACAGCTTAAGACTCGATCAAATTATCCCTAAAGCTTAC
Found at i:102620 original size:156 final size:157
Alignment explanation
Indices: 102167--102784 Score: 435
Period size: 153 Copynumber: 4.0 Consensus size: 157
102157 TAAGTTCAAG
* * * * * *
102167 AAAAATTACGAAAATGCCCCTAAGGGATATCCTT-GACGTAGAAGTA-C-CCG-ATACCCTTAAA
1 AAAAATTACAAAAATACCTCTAAGGGATA-CCTTCAACGTAAAAGTATCTCGGCA-ACCC-TAAA
* * * * * * * *
102228 AGACTTAAAAATGACTA-TAAAAGGGATGAACCTATCCTAAAGACCCACCTTCGGCATAAAAGC-
63 AGACTTAAAAAGGATTAGAAAAAGGGATGAACCTATCCTAAATATCTACCTTCAGCACAAAAGCA
* * * * * ***
102291 GGACTCGATGATAACTTAGGACTCAATTCTA
128 GAAC-CGGTGATGACCTAGGAGTTGGTTCTA
* * * * ** *
102322 AAAAATTACGAAAATACC-CTTAGGGGTACCTTCGACGTAAAAG-A-AGC-GAAACCCCT-AAAG
1 AAAAATTACAAAAATACCTCTAAGGGATACCTTCAACGTAAAAGTATCTCGGCAA-CCCTAAAAG
* ** * * *
102382 AACTTGAAGTGGATCA-AAAAAAGGATGAACCTATCCTAAATATCTACCTTCGGCACAAAAGC-G
65 -ACTTAAAAAGGATTAGAAAAAGGGATGAACCTATCCTAAATATCTACCTTCAGCACAAAAGCAG
* *
102445 GACCTGGTGATGACTTAGGAGTTGGTTCTA
129 AACC-GGTGATGACCTAGGAGTTGGTTCTA
* * * * ** * *
102475 AAAAATTACGAAAAT-GCTCTTATGGGTTTACCTTTGACGTAAAAGTTTCTCGGCAACCCTAAAG
1 AAAAATTACAAAAATACCTC-TAAGGG-ATACCTTCAACGTAAAAGTATCTCGGCAACCCTAAAA
* * * * *
102539 GAGTTAAAAA-GATTAGAAAATGGG-TGAACC-AGTCCTAACTATCTACCTTCAACATAAAAGCA
64 GACTTAAAAAGGATTAGAAAAAGGGATGAACCTA-TCCTAAATATCTACCTTCAGCACAAAAGCA
* * * * * *
102601 GAACCGGTGGTAACCTAGGACTCGGTTTTG
128 GAACCGGTGATGACCTAGGAGTTGGTTCTA
* * *
102631 AAAAATTACAAAAATACCTCTAAGGGATACCTTCAACGTGAAAGTATCTCGGTACCCCTAAAAGA
1 AAAAATTACAAAAATACCTCTAAGGGATACCTTCAACGTAAAAGTATCTCGGCAACCCTAAAAGA
** * *
102696 CTTAAAAAGGATTTTAAAAAGGGATGAACCTATCCTAAATATCTACCTTCAGTAGAAAAGCA-AA
66 CTTAAAAAGGATTAGAAAAAGGGATGAACCTATCCTAAATATCTACCTTCAGCACAAAAGCAGAA
*
102760 CTCGGTGATGACCTAGTAGTTGGTT
131 C-CGGTGATGACCTAGGAGTTGGTT
102785 TCGTAACAAA
Statistics
Matches: 366, Mismatches: 76, Indels: 40
0.76 0.16 0.08
Matches are distributed among these distances:
152 6 0.02
153 96 0.26
154 26 0.07
155 72 0.20
156 86 0.23
157 73 0.20
158 7 0.02
ACGTcount: A:0.38, C:0.20, G:0.19, T:0.24
Consensus pattern (157 bp):
AAAAATTACAAAAATACCTCTAAGGGATACCTTCAACGTAAAAGTATCTCGGCAACCCTAAAAGA
CTTAAAAAGGATTAGAAAAAGGGATGAACCTATCCTAAATATCTACCTTCAGCACAAAAGCAGAA
CCGGTGATGACCTAGGAGTTGGTTCTA
Found at i:102785 original size:157 final size:156
Alignment explanation
Indices: 102398--102785 Score: 406
Period size: 156 Copynumber: 2.5 Consensus size: 156
102388 AAGTGGATCA
* * ** *
102398 AAAAAAGGATGAACCTATCCTAAATATCTACCTTCGGCACAAAAGCGGACCTGGTGATGACTTAG
1 AAAAAGGGATGAACCTATCCTAAATATCTACCTTCAGCACAAAAGCAAACC-GGTGATGACCTAG
* * * * * ** *
102463 GAGTTGGTTCTAAAAAATTACGAAAATGCTCTTATGGGTTTACCTTTGACGTAAAAGTTTCTCGG
65 GAGTTGGTTTTAAAAAATTACAAAAATCCTCTTAAGGGTATACCTTCAACGTAAAAGTATCTCGG
* *
102528 CAACCCTAAAGGAGTTAAAAAGATTAG
130 CAACCCTAAAAGACTTAAAAAGATTAG
* * * * * *
102555 AAAATGGG-TGAACC-AGTCCTAACTATCTACCTTCAACATAAAAGCAGAACCGGTGGTAACCTA
1 AAAAAGGGATGAACCTA-TCCTAAATATCTACCTTCAGCACAAAAGCA-AACCGGTGATGACCTA
* * * *
102618 GGACTCGGTTTTGAAAAATTACAAAAATACCTC-TAAGGG-ATACCTTCAACGTGAAAGTATCTC
64 GGAGTTGGTTTTAAAAAATTACAAAAAT-CCTCTTAAGGGTATACCTTCAACGTAAAAGTATCTC
* * **
102681 GGTACCCCTAAAAGACTTAAAAAGGATTTT
128 GGCAACCCTAAAAGACTTAAAAA-GATTAG
* *
102711 AAAAAGGGATGAACCTATCCTAAATATCTACCTTCAGTAGAAAAGCAAACTCGGTGATGACCTAG
1 AAAAAGGGATGAACCTATCCTAAATATCTACCTTCAGCACAAAAGCAAAC-CGGTGATGACCTAG
*
102776 TAGTTGGTTT
65 GAGTTGGTTT
102786 CGTAACAAAT
Statistics
Matches: 185, Mismatches: 39, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
155 39 0.21
156 82 0.44
157 63 0.34
158 1 0.01
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.26
Consensus pattern (156 bp):
AAAAAGGGATGAACCTATCCTAAATATCTACCTTCAGCACAAAAGCAAACCGGTGATGACCTAGG
AGTTGGTTTTAAAAAATTACAAAAATCCTCTTAAGGGTATACCTTCAACGTAAAAGTATCTCGGC
AACCCTAAAAGACTTAAAAAGATTAG
Found at i:103409 original size:147 final size:151
Alignment explanation
Indices: 103255--103523 Score: 336
Period size: 147 Copynumber: 1.8 Consensus size: 151
103245 TTTTCTTTTA
* * *
103255 AAAAAATCATTTCATACCTTAATGAAAATCCGT-CAAA-ATAC-AAAAAATTTT-GAAATCTTTT
1 AAAAAATCATTCCATACCTTAATGAAAA-CC-TAAAAAGATACGAAAAAATTTTCGAAATATTTT
*
103316 AATACC-CCTACAGATACCCA-AAGAATATAAAAGA-TTGAAAACGATTAATATTTATTTTAGCA
64 -ATACCTCCTACAGATACCCATAAGAATATAAAAGACTTGAAAACAATTAATATTTATTTTAGCA
103378 AGGAGGGTTAATTTAATTATTTCT
128 AGGAGGGTTAATTTAATTATTTCT
* * * * **
103402 AAAAAATCATTCCGTACTTTAATGGATACCTAAAAAGATACGAAAAGTTTTTCGAAATATTTTAT
1 AAAAAATCATTCCATACCTTAATGAAAACCTAAAAAGATACGAAAAAATTTTCGAAATATTTTAT
* * * *
103467 ACCTCCTACGGATACCCATAGGAATATAAAAGACTTGAAAATAATTGATATTTATTT
66 ACCTCCTACAGATACCCATAAGAATATAAAAGACTTGAAAACAATTAATATTTATTT
103524 ATATTTGGAA
Statistics
Matches: 101, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
145 1 0.01
146 5 0.05
147 27 0.27
148 13 0.13
149 22 0.22
150 13 0.13
151 20 0.20
ACGTcount: A:0.43, C:0.14, G:0.10, T:0.33
Consensus pattern (151 bp):
AAAAAATCATTCCATACCTTAATGAAAACCTAAAAAGATACGAAAAAATTTTCGAAATATTTTAT
ACCTCCTACAGATACCCATAAGAATATAAAAGACTTGAAAACAATTAATATTTATTTTAGCAAGG
AGGGTTAATTTAATTATTTCT
Found at i:104711 original size:19 final size:19
Alignment explanation
Indices: 104687--104729 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
104677 GGGAGTAAGG
104687 GGGAGGATTGACCAAGGGT
1 GGGAGGATTGACCAAGGGT
104706 GGGAGGATTGACCAAGGGT
1 GGGAGGATTGACCAAGGGT
104725 GGGAG
1 GGGAG
104730 AAAAACCCCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.26, C:0.09, G:0.51, T:0.14
Consensus pattern (19 bp):
GGGAGGATTGACCAAGGGT
Found at i:105558 original size:164 final size:164
Alignment explanation
Indices: 105316--105843 Score: 616
Period size: 164 Copynumber: 3.2 Consensus size: 164
105306 TCGAGGAAAA
* ** * * * *
105316 AAAACTCATGAAAATAAATTTATTTTTCAAAACAAAATTAATATGGAATAAATAATAGTATTTTA
1 AAAACTCATGAAAATGAATTTATTTTT-AAAACTGAATTAACATGAAATAAATAATAATATTTGA
* *
105381 TGACTTTTAAAAATTGAAAACTGAGAAAAATCCCCTCGAAAAAATTTATAGAGTAGAAAACACTA
65 TGACTTTTAAAAATTGAAAACTGAGAAAAAT-CCCTCAAAAAAAATTATAGAGTAGAAAACACTA
*
105446 TATTTAGGAAAAATG-GTATTTCAAGGAAAAAATCT
129 TATTTAGGAAAAATGAGAATTTCAAGGAAAAAATCT
* * *
105481 AAAACTC-TCGAAAATGAATTTATTTTTAAAATTGAATTAACATGAAATAAATTATAATATTCGA
1 AAAACTCAT-GAAAATGAATTTATTTTTAAAACTGAATTAACATGAAATAAATAATAATATTTGA
* * *
105545 TGACTTTTAAAAATTGAAAACTGAGAAAAATTCCCT-AAAAAAAATTACAGAGTAGAAAATACTG
65 TGACTTTTAAAAATTGAAAACTGAGAAAAA-TCCCTCAAAAAAAATTATAGAGTAGAAAACACTA
*
105609 TATTTAGTAAAAATGAGAATTTCAAGGAAAAAATCT
129 TATTTAGGAAAAATGAGAATTTCAAGGAAAAAATCT
105645 AAAACTCATGAAAATGAATTTATTTTTTAAAACTGAATTAACATGAAATAAATAATAATATTTGA
1 AAAACTCATGAAAATGAATTTA-TTTTTAAAACTGAATTAACATGAAATAAATAATAATATTTGA
* * * * ** * * * **
105710 TTAATTTTACAAATTAAAAACCAAAAAAAAGTCTCTCAAAAAAAATCATAGAGTAGAAAACTTTG
65 TGACTTTTAAAAATTGAAAACTGAGAAAAA-TCCCTCAAAAAAAATTATAGAGTAGAAAACACT-
* * * * *
105775 A-ATTT-CGAAAAAAGAAAAATTTTAAGGAAAAAATTCA
128 ATATTTAGGAAAAATG-AGAATTTCAAGGAAAAAA-TCT
* *
105812 AAAACTAATGAAAATGAAATTATTTTTCAAAA
1 AAAACTCATGAAAATGAATTTATTTTT-AAAA
105844 TTGATTTGAT
Statistics
Matches: 310, Mismatches: 43, Indels: 18
0.84 0.12 0.05
Matches are distributed among these distances:
163 37 0.12
164 102 0.33
165 98 0.32
166 47 0.15
167 26 0.08
ACGTcount: A:0.52, C:0.09, G:0.10, T:0.30
Consensus pattern (164 bp):
AAAACTCATGAAAATGAATTTATTTTTAAAACTGAATTAACATGAAATAAATAATAATATTTGAT
GACTTTTAAAAATTGAAAACTGAGAAAAATCCCTCAAAAAAAATTATAGAGTAGAAAACACTATA
TTTAGGAAAAATGAGAATTTCAAGGAAAAAATCT
Found at i:106901 original size:51 final size:52
Alignment explanation
Indices: 106841--106950 Score: 141
Period size: 51 Copynumber: 2.1 Consensus size: 52
106831 ATTTAACTAG
* * * *
106841 ATGTATCAATACATTGAAGACTGTATCGATACATTTAGGT-TAAAACCCAAA
1 ATGTATCAATACAATGAAGAATCTATCGATACATTTAGGTCAAAAACCCAAA
* * * *
106892 ATGTATCAATACAATGAATAATCTATCGATACATTTGGGTCAAAAACCTAGA
1 ATGTATCAATACAATGAAGAATCTATCGATACATTTAGGTCAAAAACCCAAA
106944 ATGTATC
1 ATGTATC
106951 GATATAAAAA
Statistics
Matches: 50, Mismatches: 8, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
51 35 0.70
52 15 0.30
ACGTcount: A:0.41, C:0.15, G:0.14, T:0.30
Consensus pattern (52 bp):
ATGTATCAATACAATGAAGAATCTATCGATACATTTAGGTCAAAAACCCAAA
Found at i:106985 original size:50 final size:49
Alignment explanation
Indices: 106862--107026 Score: 172
Period size: 48 Copynumber: 3.3 Consensus size: 49
106852 CATTGAAGAC
* * * * * *
106862 TGTATCGATACATTTAGGTTAAAACCCAAAATGTATCAATACAATGAATAA
1 TGTATCGATACATTT-GGATCAAACCCAGAATGTATCGATATAAT-AAAAA
* * *
106913 TCTATCGATACATTTGGGTCAAAAACCTAGAATGTATCGATATAA-AAAAA
1 TGTATCGATACATTTGGATC--AAACCCAGAATGTATCGATATAATAAAAA
*
106963 TGTATCGATACACTTT-GATCAAACCCAGAATGTATTGATATAATAAAAA
1 TGTATCGATACA-TTTGGATCAAACCCAGAATGTATCGATATAATAAAAA
*
107012 TGTATTGATACATTT
1 TGTATCGATACATTT
107027 TTTTTCCAAA
Statistics
Matches: 97, Mismatches: 13, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
48 24 0.25
49 16 0.16
50 21 0.22
51 17 0.18
52 19 0.20
ACGTcount: A:0.42, C:0.13, G:0.13, T:0.32
Consensus pattern (49 bp):
TGTATCGATACATTTGGATCAAACCCAGAATGTATCGATATAATAAAAA
Found at i:107106 original size:20 final size:20
Alignment explanation
Indices: 107063--107122 Score: 66
Period size: 20 Copynumber: 3.0 Consensus size: 20
107053 GATATGGTCT
***
107063 TGTATCGATACATTTCAAACA
1 TGTATCGATACA-TTCACTTA
107084 TGTATCGATACATTCACTTA
1 TGTATCGATACATTCACTTA
**
107104 TGTATTAATACATTCACTT
1 TGTATCGATACATTCACTT
107123 GTTATATCAT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 22 0.65
21 12 0.35
ACGTcount: A:0.33, C:0.18, G:0.08, T:0.40
Consensus pattern (20 bp):
TGTATCGATACATTCACTTA
Found at i:108394 original size:27 final size:27
Alignment explanation
Indices: 108341--108395 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
108331 TCGGTTGAAA
* **
108341 AATGGGGATGGAGTGTCCCCTCGGATG
1 AATGGGGATAGAGTGTCCCCGAGGATG
* *
108368 AATGGGGTTAGAGTGTCCCCGATGATG
1 AATGGGGATAGAGTGTCCCCGAGGATG
108395 A
1 A
108396 TATTTTGGGA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.22, C:0.16, G:0.38, T:0.24
Consensus pattern (27 bp):
AATGGGGATAGAGTGTCCCCGAGGATG
Found at i:110766 original size:19 final size:20
Alignment explanation
Indices: 110722--110773 Score: 70
Period size: 19 Copynumber: 2.6 Consensus size: 20
110712 AAATACCTAG
*
110722 ATGTATCGATACAATGATAA
1 ATGTATCGATACAATAATAA
**
110742 ATGTATCGATACAA-AATTT
1 ATGTATCGATACAATAATAA
110761 ATGTATCGATACA
1 ATGTATCGATACA
110774 TTGTATCGAT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 15 0.52
20 14 0.48
ACGTcount: A:0.42, C:0.12, G:0.13, T:0.33
Consensus pattern (20 bp):
ATGTATCGATACAATAATAA
Found at i:110780 original size:13 final size:13
Alignment explanation
Indices: 110762--110786 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
110752 ACAAAATTTA
110762 TGTATCGATACAT
1 TGTATCGATACAT
110775 TGTATCGATACA
1 TGTATCGATACA
110787 AATTGTAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:111522 original size:60 final size:60
Alignment explanation
Indices: 111408--111534 Score: 148
Period size: 60 Copynumber: 2.1 Consensus size: 60
111398 TTAAAGATGA
* * * * *
111408 TAAAGATGAGAAGAGTGATAAAGATGCCAATTGCTGATTCAAGGCCAATGATATTAGGCT
1 TAAAGATGAAAAAAATGATAAAGATGCCAATTGCTGATTCAAAGCCAATAATATTAGGCT
* * * * *
111468 TAAAGATGAAAAAAATGATAAAGGTGCCATTATGTTGATTCAAAG-CAGTAATATTGGGCT
1 TAAAGATGAAAAAAATGATAAAGATGCCAAT-TGCTGATTCAAAGCCAATAATATTAGGCT
111528 TAAAGAT
1 TAAAGAT
111535 ACGAAGAATG
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
60 45 0.80
61 11 0.20
ACGTcount: A:0.41, C:0.09, G:0.23, T:0.27
Consensus pattern (60 bp):
TAAAGATGAAAAAAATGATAAAGATGCCAATTGCTGATTCAAAGCCAATAATATTAGGCT
Found at i:111605 original size:43 final size:43
Alignment explanation
Indices: 111543--112007 Score: 345
Period size: 43 Copynumber: 10.0 Consensus size: 43
111533 ATACGAAGAA
*
111543 TGCCAATGTGCTGATTCAAGGCCAACGACATTAGACTTAAAGG
1 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGG
* *
111586 CGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAATATGACAAAGG
1 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGAC-----T-T---AAAGG
* * *
111638 TGCCAATATGCTGATTCAAAGCCAACGATATTGGACTTAAAGG
1 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGG
* *
111681 TGCTAATGATGTCAATGTGCTGATTCAAGGCCAATGACATTAGACTTAAAGG
1 TGC---------CAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGG
**
111733 TGCCAATGTGCTGATTCAAGGCCAACGACATTAAACTTAAAGG
1 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGG
* * *
111776 TGCCAATATGCTGATTCAAGGCCAGCGACATTCGACTTAATAATGACAAAGG
1 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGAC----T--T---AAAGG
* *
111828 TGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGG
1 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGG
* *
111871 TGCCAATGTGCTGATTCAAGTCCAATGACATTGGACTTAAAGATGACAAAGG
1 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGAC-T-----T---AAAGG
* * *
111923 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGG
1 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGG
** * * * * * * *
111966 TTTCACTGTGCTAAGTCAAGGCTAGCGACGTTGGGCTTAAAG
1 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAG
112008 ATGCGAAGAA
Statistics
Matches: 345, Mismatches: 41, Indels: 72
0.75 0.09 0.16
Matches are distributed among these distances:
43 185 0.54
44 1 0.00
46 3 0.01
47 2 0.01
48 2 0.01
49 3 0.01
51 1 0.00
52 148 0.43
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.25
Consensus pattern (43 bp):
TGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGG
Found at i:111671 original size:52 final size:50
Alignment explanation
Indices: 111581--111963 Score: 331
Period size: 52 Copynumber: 7.9 Consensus size: 50
111571 CATTAGACTT
* * *
111581 AAAGGCGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAATATGAC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAACGACATTGGACTTAAAT-TG-C
* * *
111633 AAAGGTGCCAATATGCTGATTCAAAGCCAACGATATTGGACTTAAAGGTGC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAACGACATTGGACTTAAA-TTGC
* * * * * *
111684 TAATGATGTCAATGTGCTGATTCAAGGCCAATGACATTAGAC-----TT--
1 -AAAGGTGCCAATATGCTGATTCAAGGCCAACGACATTGGACTTAAATTGC
* *
111728 AAAGGTGCCAATGTGCTGATTCAAGGCCAACGACATT--A---AACTT--
1 AAAGGTGCCAATATGCTGATTCAAGGCCAACGACATTGGACTTAAATTGC
* * *
111771 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTCGACTTAATAATGAC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAACGACATTGGACTTAA-ATTG-C
*
111823 AAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGAC-----TT--
1 AAAGGTGCCAATATGCTGATTCAAGGCCAACGACATTGGACTTAAATTGC
* * * *
111866 AAAGGTGCCAATGTGCTGATTCAAGTCCAATGACATTGGACTTAAAGATGAC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAACGACATTGGACTTAAA-TTG-C
* *
111918 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAACGACATTGGACTTAAA
111964 GGTTTCACTG
Statistics
Matches: 271, Mismatches: 37, Indels: 46
0.77 0.10 0.13
Matches are distributed among these distances:
41 1 0.00
43 107 0.39
45 1 0.00
46 2 0.01
48 2 0.01
49 2 0.01
51 1 0.00
52 155 0.57
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.25
Consensus pattern (50 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAACGACATTGGACTTAAATTGC
Found at i:111987 original size:190 final size:190
Alignment explanation
Indices: 111520--111994 Score: 601
Period size: 190 Copynumber: 2.5 Consensus size: 190
111510 AAGCAGTAAT
* * *
111520 ATTGGGCTTAAAGATACGAAGAATGCCAATGTGCTGATTCAAGGCCAACGACATTAGACTTAAAG
1 ATTGGACTTAAAGATACAAAG-GTGCCAATGTGCTGATTCAAGGCCAACGACATTAGACTTAAAG
* *
111585 GCGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAATATGACAAAGGTGCCAATATGCT
65 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTCGACTTAAATATGACAAAGGTGCCAATATGCT
111650 GATTCAAAGCCAACGATATTGGACTTAAAGGTGCTAATGATGTCAATGTGCTGATTCAAGGCCAA
130 GATTCAAAGCCAACGATATTGGACTTAAAGGTGC--------TCAATGTGCTGATTCAAGGCCAA
111715 TGAC
187 TGAC
* *
111719 ATTAGAC-T-----T--AAAGGTGCCAATGTGCTGATTCAAGGCCAACGACATTAAACTTAAAGG
1 ATTGGACTTAAAGATACAAAGGTGCCAATGTGCTGATTCAAGGCCAACGACATTAGACTTAAAGG
*
111776 TGCCAATATGCTGATTCAAGGCCAGCGACATTCGACTT-AATAATGACAAAGGTGCCAATATGCT
66 TGCCAATGTGCTGATTCAAGGCCAGCGACATTCGACTTAAAT-ATGACAAAGGTGCCAATATGCT
* *
111840 GATTCAAGGCCAACGATATTGGACTTAAAGGTGC-CAATGTGCTGATTCAAGTCCAATGAC
130 GATTCAAAGCCAACGATATTGGACTTAAAGGTGCTCAATGTGCTGATTCAAGGCCAATGAC
* * * *
111900 ATTGGACTTAAAGATGACAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG
1 ATTGGACTTAAAGAT-ACAAAGGTGCCAATGTGCTGATTCAAGGCCAACGACATTAGACTTAAAG
** * * * *
111965 GTTTCACTGTGCTAAGTCAAGGCTAGCGAC
65 GTGCCAATGTGCTGATTCAAGGCCAGCGAC
111995 GTTGGGCTTA
Statistics
Matches: 243, Mismatches: 23, Indels: 29
0.82 0.08 0.10
Matches are distributed among these distances:
181 31 0.13
182 1 0.00
187 1 0.00
189 3 0.01
190 197 0.81
191 3 0.01
193 1 0.00
198 1 0.00
199 5 0.02
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (190 bp):
ATTGGACTTAAAGATACAAAGGTGCCAATGTGCTGATTCAAGGCCAACGACATTAGACTTAAAGG
TGCCAATGTGCTGATTCAAGGCCAGCGACATTCGACTTAAATATGACAAAGGTGCCAATATGCTG
ATTCAAAGCCAACGATATTGGACTTAAAGGTGCTCAATGTGCTGATTCAAGGCCAATGAC
Found at i:112007 original size:95 final size:95
Alignment explanation
Indices: 111520--112010 Score: 536
Period size: 95 Copynumber: 5.2 Consensus size: 95
111510 AAGCAGTAAT
* * * * * *
111520 ATTGGGCTTAAAGAT-ACGAAGAATGCCAATGTGCTGATTCAAGGCCAACGACATTAGACTTAAA
1 ATTGGACTTAAAGATGACAAAG-GTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAA
*
111584 GGCGCCAATGTGCTGATTCAAGGCCAGCGAC
65 GGTGCCAATGTGCTGATTCAAGGCCAGCGAC
* *
111615 ATTGGACTTAAATATGACAAAGGTGCCAATATGCTGATTCAAAGCCAACGATATTGGACTTAAAG
1 ATTGGACTTAAAGATGACAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAG
**
111680 GTGCTAATGATGTCAATGTGCTGATTCAAGGCCAATGAC
66 GTGC---------CAATGTGCTGATTCAAGGCCAGCGAC
* * * **
111719 ATTAGAC-T-----T---AAAGGTGCCAATGTGCTGATTCAAGGCCAACGACATTAAACTTAAAG
1 ATTGGACTTAAAGATGACAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAG
*
111775 GTGCCAATATGCTGATTCAAGGCCAGCGAC
66 GTGCCAATGTGCTGATTCAAGGCCAGCGAC
*
111805 ATTCGACTTAATA-ATGACAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAA
1 ATTGGACTTAA-AGATGACAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAA
* **
111869 GGTGCCAATGTGCTGATTCAAGTCCAATGAC
65 GGTGCCAATGTGCTGATTCAAGGCCAGCGAC
*
111900 ATTGGACTTAAAGATGACAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG
1 ATTGGACTTAAAGATGACAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAG
** * * * *
111965 GTTTCACTGTGCTAAGTCAAGGCTAGCGAC
66 GTGCCAATGTGCTGATTCAAGGCCAGCGAC
* *
111995 GTTGGGCTTAAAGATG
1 ATTGGACTTAAAGATG
112011 CGAAGAATGA
Statistics
Matches: 334, Mismatches: 42, Indels: 40
0.80 0.10 0.10
Matches are distributed among these distances:
86 29 0.09
87 1 0.00
92 1 0.00
94 1 0.00
95 265 0.79
96 5 0.01
98 1 0.00
103 1 0.00
104 30 0.09
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.25
Consensus pattern (95 bp):
ATTGGACTTAAAGATGACAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAG
GTGCCAATGTGCTGATTCAAGGCCAGCGAC
Found at i:112502 original size:32 final size:30
Alignment explanation
Indices: 112474--112567 Score: 118
Period size: 31 Copynumber: 3.0 Consensus size: 30
112464 CAGGCTTTTG
*
112474 AAAGGGTTACCACTGACTTGTGTGGGCTTT
1 AAAGGGTTGCCACTGACTTGTGTGGGCTTT
*
112504 AAGAAGGGTTGCCACT-AGCTTGTATGGGCTTT
1 -A-AAGGGTTGCCACTGA-CTTGTGTGGGCTTT
*
112536 AAAGGGGTTGCCACCGACTTGTGTGGGCTTT
1 AAA-GGGTTGCCACTGACTTGTGTGGGCTTT
112567 A
1 A
112568 CGAAGGATTT
Statistics
Matches: 55, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
30 2 0.04
31 27 0.49
32 26 0.47
ACGTcount: A:0.20, C:0.17, G:0.32, T:0.31
Consensus pattern (30 bp):
AAAGGGTTGCCACTGACTTGTGTGGGCTTT
Found at i:112547 original size:31 final size:32
Alignment explanation
Indices: 112475--112573 Score: 130
Period size: 32 Copynumber: 3.1 Consensus size: 32
112465 AGGCTTTTGA
*
112475 AAGGGTTACCACTGACTTGTGTGGGCTTTAAG
1 AAGGGTTGCCACTGACTTGTGTGGGCTTTAAG
*
112507 AAGGGTTGCCACT-AGCTTGTATGGGCTTTAA-
1 AAGGGTTGCCACTGA-CTTGTGTGGGCTTTAAG
* * *
112538 AGGGGTTGCCACCGACTTGTGTGGGCTTTACG
1 AAGGGTTGCCACTGACTTGTGTGGGCTTTAAG
112570 AAGG
1 AAGG
112574 ATTTCTCCAC
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
31 26 0.46
32 31 0.54
ACGTcount: A:0.20, C:0.17, G:0.33, T:0.29
Consensus pattern (32 bp):
AAGGGTTGCCACTGACTTGTGTGGGCTTTAAG
Found at i:112805 original size:28 final size:28
Alignment explanation
Indices: 112774--112829 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
112764 TCCGAAAAGA
*
112774 TGCCATTAACTTGTGGACTTTGAAGAGG
1 TGCCATTAACTAGTGGACTTTGAAGAGG
* *
112802 TGCCATTAACTAGTGGGCTTTGAGGAGG
1 TGCCATTAACTAGTGGACTTTGAAGAGG
112830 GATTCGTGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.23, C:0.14, G:0.32, T:0.30
Consensus pattern (28 bp):
TGCCATTAACTAGTGGACTTTGAAGAGG
Found at i:112914 original size:14 final size:14
Alignment explanation
Indices: 112872--112915 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
112862 TTCAAACATG
* *
112872 TTCTCGACAAAAAG
1 TTCTTGACAAAAAT
112886 TTCTTGACAAAAAT
1 TTCTTGACAAAAAT
*
112900 TTCTTGACAACAAT
1 TTCTTGACAAAAAT
112914 TT
1 TT
112916 TGTTGACAAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.39, C:0.18, G:0.09, T:0.34
Consensus pattern (14 bp):
TTCTTGACAAAAAT
Found at i:112923 original size:15 final size:15
Alignment explanation
Indices: 112872--112925 Score: 58
Period size: 14 Copynumber: 3.7 Consensus size: 15
112862 TTCAAACATG
* *
112872 TTCTCGACAA-AAAG
1 TTCTTGACAACAAAT
112886 TTCTTGACAA-AAAT
1 TTCTTGACAACAAAT
*
112900 TTCTTGACAACAATT
1 TTCTTGACAACAAAT
*
112915 TTGTTGACAAC
1 TTCTTGACAAC
112926 GGCAAATTAG
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
14 22 0.63
15 13 0.37
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (15 bp):
TTCTTGACAACAAAT
Found at i:114169 original size:16 final size:14
Alignment explanation
Indices: 114144--114192 Score: 62
Period size: 16 Copynumber: 3.2 Consensus size: 14
114134 CCTTTTTTCC
114144 TTTTTTTTGTTTATT
1 TTTTTTTTGTTT-TT
114159 TTTTGTTTTGTGTTTT
1 TTTT-TTTTGT-TTTT
114175 TCTTTTTTTGTTTTT
1 T-TTTTTTTGTTTTT
114190 TTT
1 TTT
114193 ACGAAAGACA
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
14 2 0.06
15 9 0.29
16 15 0.48
17 5 0.16
ACGTcount: A:0.02, C:0.02, G:0.10, T:0.86
Consensus pattern (14 bp):
TTTTTTTTGTTTTT
Found at i:128752 original size:52 final size:52
Alignment explanation
Indices: 128635--128753 Score: 130
Period size: 52 Copynumber: 2.3 Consensus size: 52
128625 ACGATGCTGG
* * * * *
128635 ACTTAGAGATGATAAAGGTGCCAATGTGCTGATTCAAGGCCACCGCCATTAA
1 ACTTAAAGATGATAAAGGTGCCAATCTACTGATTCAAAGCCACCGACATTAA
* * ** **
128687 ACTTAAATATGATAAAGGTGCCAATCTATTGATTCAAAGCCAGTGACATTGT
1 ACTTAAAGATGATAAAGGTGCCAATCTACTGATTCAAAGCCACCGACATTAA
*
128739 ACTTAAAGGTGATAA
1 ACTTAAAGATGATAA
128754 GGAAGCCAAT
Statistics
Matches: 54, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
52 54 1.00
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (52 bp):
ACTTAAAGATGATAAAGGTGCCAATCTACTGATTCAAAGCCACCGACATTAA
Done.