Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold272
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 421410
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
File 2 of 3
Found at i:128993 original size:52 final size:51
Alignment explanation
Indices: 128814--128993 Score: 139
Period size: 52 Copynumber: 3.5 Consensus size: 51
128804 GGTTTTGGCA
* *
128814 AGTGCCAATGTGCTAAGTCAAGG-CTAGCGATAGTGAACTTAAAGATGATAAG
1 AGTGCCAATGTGCTGAGTCAAGGCCT-GCGATATTG-ACTTAAAGATGATAAG
* * * ** * * * * *
128866 GGTGCTAATATATTGATTCAAGGTCAGCAACATTGGACTTAAAGATGATAA-
1 AGTGCCAATGTGCTGAGTCAAGGCCTGCGATATT-GACTTAAAGATGATAAG
* * * * * *
128917 AGGTTCTAATGAGCTGATTTAAGGCCTGCGATATTAGACTTAAAGATGACAAG
1 A-GTGCCAATGTGCTGAGTCAAGGCCTGCGATATT-GACTTAAAGATGATAAG
128970 AGTGCCAATGTGCTGAGTCAAGGC
1 AGTGCCAATGTGCTGAGTCAAGGC
128994 TAGGGACATT
Statistics
Matches: 95, Mismatches: 29, Indels: 8
0.72 0.22 0.06
Matches are distributed among these distances:
52 92 0.97
53 3 0.03
ACGTcount: A:0.34, C:0.14, G:0.26, T:0.26
Consensus pattern (51 bp):
AGTGCCAATGTGCTGAGTCAAGGCCTGCGATATTGACTTAAAGATGATAAG
Found at i:129262 original size:33 final size:32
Alignment explanation
Indices: 129195--129283 Score: 117
Period size: 33 Copynumber: 2.8 Consensus size: 32
129185 TATACCGTCG
* *
129195 ACTTGTGCGGGCTTTGAAAA-AGTTGCCACCA
1 ACTTGTGTGGGCTTTGAAAAGGGTTGCCACCA
* *
129226 ACTTGTGTGGGATATTGAAAAGGGTTGCCACTA
1 ACTTGTGTGGGCT-TTGAAAAGGGTTGCCACCA
129259 ACTTGTGTGGGCTTTTGAAAAGGGT
1 ACTTGTGTGGGC-TTTGAAAAGGGT
129284 GCTATGTAGT
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
31 11 0.22
32 7 0.14
33 31 0.62
34 1 0.02
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.30
Consensus pattern (32 bp):
ACTTGTGTGGGCTTTGAAAAGGGTTGCCACCA
Found at i:129325 original size:30 final size:30
Alignment explanation
Indices: 129291--129402 Score: 120
Period size: 30 Copynumber: 3.8 Consensus size: 30
129281 GGTGCTATGT
**
129291 AGTTGTGGACCGTAAAAAGAGGTGACACAA
1 AGTTGTGGACTTTAAAAAGAGGTGACACAA
* * **
129321 AGTTGTGAACTTTAAAAA-AGGTGTCACTG
1 AGTTGTGGACTTTAAAAAGAGGTGACACAA
* **
129350 ACTCATGGACTTTAAAAAGAGGTGACACAA
1 AGTTGTGGACTTTAAAAAGAGGTGACACAA
*
129380 ATTTGTGGACTTTAAAAAG-GGTG
1 AGTTGTGGACTTTAAAAAGAGGTG
129403 CTACTGAGTC
Statistics
Matches: 65, Mismatches: 16, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
29 26 0.40
30 39 0.60
ACGTcount: A:0.38, C:0.12, G:0.26, T:0.25
Consensus pattern (30 bp):
AGTTGTGGACTTTAAAAAGAGGTGACACAA
Found at i:129337 original size:29 final size:29
Alignment explanation
Indices: 129305--129396 Score: 94
Period size: 29 Copynumber: 3.1 Consensus size: 29
129295 GTGGACCGTA
* *
129305 AAAAGAGGTGACACAAAGTTGTGAACTTT
1 AAAAGAGGTGACACAAACTTGTGGACTTT
* * ** **
129334 AAAAAAGGTGTCACTGACTCATGGACTTT
1 AAAAGAGGTGACACAAACTTGTGGACTTT
*
129363 AAAAAGAGGTGACACAAATTTGTGGACTTT
1 -AAAAGAGGTGACACAAACTTGTGGACTTT
129393 AAAA
1 AAAA
129397 AGGGTGCTAC
Statistics
Matches: 47, Mismatches: 15, Indels: 2
0.73 0.23 0.03
Matches are distributed among these distances:
29 25 0.53
30 22 0.47
ACGTcount: A:0.41, C:0.12, G:0.22, T:0.25
Consensus pattern (29 bp):
AAAAGAGGTGACACAAACTTGTGGACTTT
Found at i:129366 original size:59 final size:59
Alignment explanation
Indices: 129303--129421 Score: 177
Period size: 59 Copynumber: 2.0 Consensus size: 59
129293 TTGTGGACCG
*
129303 TAAAAAGAGGTGACACAAAGTTGTGAACTTTAAAAAAGGTG-TCACTGACTCATGGACTT
1 TAAAAAGAGGTGACACAAAGTTGTGAACTTTAAAAAAGGTGCT-ACTGACTCACGGACTT
* * * *
129362 TAAAAAGAGGTGACACAAATTTGTGGACTTTAAAAAGGGTGCTACTGAGTCACGGACTT
1 TAAAAAGAGGTGACACAAAGTTGTGAACTTTAAAAAAGGTGCTACTGACTCACGGACTT
129421 T
1 T
129422 GAGAAAGTTA
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
59 53 0.98
60 1 0.02
ACGTcount: A:0.37, C:0.13, G:0.24, T:0.26
Consensus pattern (59 bp):
TAAAAAGAGGTGACACAAAGTTGTGAACTTTAAAAAAGGTGCTACTGACTCACGGACTT
Found at i:130628 original size:25 final size:25
Alignment explanation
Indices: 130600--130690 Score: 66
Period size: 25 Copynumber: 3.6 Consensus size: 25
130590 TTGTTTTTGA
130600 TTTTTTGATTGATTTTTATTTTTCTT
1 TTTTTTGATTGATTTTTATTTTTC-T
**
130626 TTTTTTGA-AAATTTTCTAGTTTTT-T
1 TTTTTTGATTGATTTT-TA-TTTTTCT
*
130651 TATTTTGATT--TTTTT-TGTTTTCT
1 TTTTTTGATTGATTTTTAT-TTTTCT
130674 TTTATTTGATTTGATTT
1 TTT-TTTGA-TTGATTT
130691 GATTTTTTTT
Statistics
Matches: 51, Mismatches: 5, Indels: 17
0.70 0.07 0.23
Matches are distributed among these distances:
21 1 0.02
22 4 0.08
23 4 0.08
24 9 0.18
25 15 0.29
26 10 0.20
27 8 0.16
ACGTcount: A:0.14, C:0.03, G:0.09, T:0.74
Consensus pattern (25 bp):
TTTTTTGATTGATTTTTATTTTTCT
Found at i:130664 original size:24 final size:24
Alignment explanation
Indices: 130603--130685 Score: 62
Period size: 24 Copynumber: 3.3 Consensus size: 24
130593 TTTTTGATTT
* *
130603 TTTGATTGATTTTTATTTTTCTTTTT
1 TTTGATT--TTTTTAGTTTTCTTTTA
* *
130629 TTTGAAAATTTTCTAG-TTT-TTTTA
1 TTTG--ATTTTTTTAGTTTTCTTTTA
*
130653 TTTTGATTTTTTTTGTTTTCTTTTA
1 -TTTGATTTTTTTAGTTTTCTTTTA
130678 TTTGATTT
1 TTTGATTT
130686 GATTTGATTT
Statistics
Matches: 45, Mismatches: 7, Indels: 12
0.70 0.11 0.19
Matches are distributed among these distances:
23 7 0.16
24 15 0.33
25 12 0.27
26 9 0.20
28 2 0.04
ACGTcount: A:0.14, C:0.04, G:0.08, T:0.73
Consensus pattern (24 bp):
TTTGATTTTTTTAGTTTTCTTTTA
Found at i:130691 original size:24 final size:25
Alignment explanation
Indices: 130645--130701 Score: 73
Period size: 24 Copynumber: 2.3 Consensus size: 25
130635 AATTTTCTAG
**
130645 TTTTTTTATTTTGATTTTTTTTG-T
1 TTTTTTTATTTTGATTTGATTTGAT
130669 TTTCTTTTA-TTTGATTTGATTTGAT
1 TTT-TTTTATTTTGATTTGATTTGAT
130694 TTTTTTTA
1 TTTTTTTA
130702 CATAGGATGG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 20 0.69
25 9 0.31
ACGTcount: A:0.12, C:0.02, G:0.09, T:0.77
Consensus pattern (25 bp):
TTTTTTTATTTTGATTTGATTTGAT
Found at i:131679 original size:13 final size:13
Alignment explanation
Indices: 131661--131685 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
131651 CATAAAGTGT
131661 TGTATCGATACAA
1 TGTATCGATACAA
131674 TGTATCGATACA
1 TGTATCGATACA
131686 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:131683 original size:33 final size:33
Alignment explanation
Indices: 131641--131707 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
131631 TTCAACGATT
131641 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
*** *
131674 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
131707 T
1 T
131708 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Found at i:131810 original size:52 final size:50
Alignment explanation
Indices: 131747--131896 Score: 210
Period size: 52 Copynumber: 2.9 Consensus size: 50
131737 CATTACTCAA
*
131747 ATGTATCGATACACTGATCTTTGTATCGATACATGCAGGCAAATTTGCCCAG
1 ATGTATCGATACACT-AT-TATGTATCGATACATGCAGGCAAATTTGCCCAG
* *
131799 ATGTATCGATACATTATAAAATGTATCGATACATGCAGGCAAATTTGCCCAG
1 ATGTATCGATACACTAT--TATGTATCGATACATGCAGGCAAATTTGCCCAG
*
131851 ATGTATCGATACACTATTAAATGTATCGATACATGCAGGTAAATTT
1 ATGTATCGATACACTATT--ATGTATCGATACATGCAGGCAAATTT
131897 TCATATTTCG
Statistics
Matches: 88, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
51 2 0.02
52 86 0.98
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31
Consensus pattern (50 bp):
ATGTATCGATACACTATTATGTATCGATACATGCAGGCAAATTTGCCCAG
Found at i:139070 original size:20 final size:21
Alignment explanation
Indices: 139045--139095 Score: 72
Period size: 20 Copynumber: 2.5 Consensus size: 21
139035 ATTCTTTTCC
139045 AAAAAAAGAAACAAA-ACAA-A
1 AAAAAAAGAAACAAACA-AACA
139065 AAAAAAAG-AACAAACAAACA
1 AAAAAAAGAAACAAACAAACA
139085 AAAAAAAGAAA
1 AAAAAAAGAAA
139096 AATAAAGGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
19 8 0.29
20 18 0.64
21 2 0.07
ACGTcount: A:0.84, C:0.10, G:0.06, T:0.00
Consensus pattern (21 bp):
AAAAAAAGAAACAAACAAACA
Found at i:139079 original size:23 final size:21
Alignment explanation
Indices: 139045--139096 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 21
139035 ATTCTTTTCC
*
139045 AAAAAAAGAAACAAAACAAAAA
1 AAAAAAACAAAC-AAACAAAAA
139067 AAAAAGAACAAACAAACAAAAA
1 AAAAA-AACAAACAAACAAAAA
139089 AAAGAAAA
1 AAA-AAAA
139097 ATAAAGGAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
22 19 0.70
23 8 0.30
ACGTcount: A:0.85, C:0.10, G:0.06, T:0.00
Consensus pattern (21 bp):
AAAAAAACAAACAAACAAAAA
Found at i:139108 original size:11 final size:9
Alignment explanation
Indices: 139045--139108 Score: 56
Period size: 10 Copynumber: 6.6 Consensus size: 9
139035 ATTCTTTTCC
139045 AAAAAAAGA
1 AAAAAAAGA
*
139054 AACAAAACAAA
1 AA-AAAA-AGA
139065 AAAAAAAGA
1 AAAAAAAGA
*
139074 ACAAACAAACA
1 A-AAA-AAAGA
139085 AAAAAAAGA
1 AAAAAAAGA
*
139094 AAAATAAAGG
1 AAAA-AAAGA
139104 AAAAA
1 AAAAA
139109 CCCCTTTTCA
Statistics
Matches: 45, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
9 14 0.31
10 22 0.49
11 9 0.20
ACGTcount: A:0.83, C:0.08, G:0.08, T:0.02
Consensus pattern (9 bp):
AAAAAAAGA
Found at i:140113 original size:30 final size:30
Alignment explanation
Indices: 140045--140211 Score: 155
Period size: 30 Copynumber: 5.5 Consensus size: 30
140035 GTCAAATACC
* * *
140045 TTCTTAAAGTCCACGACTCAATGGCAATCTC
1 TTCTCAAAGTCCACGACTCAGTGGC-ATCTT
140076 TTCTCAAAGTCCACGACTCAGTGGCAT-TT
1 TTCTCAAAGTCCACGACTCAGTGGCATCTT
*
140105 TGTCTCAAAGTCCACGACTTAGTGGCATCCTT
1 T-TCTCAAAGTCCACGACTCAGTGGCAT-CTT
*
140137 TTCTTCAAAG-CCAACGAATCAGTGGCAT-TT
1 TTC-TCAAAGTCC-ACGACTCAGTGGCATCTT
* *
140167 TGTC-CTAAAGTCCACGACTCCGTGGCACCTT
1 T-TCTC-AAAGTCCACGACTCAGTGGCATCTT
*
140198 CTTCT-AAAGCCCAC
1 -TTCTCAAAGTCCAC
140212 ACAAGTCGGT
Statistics
Matches: 115, Mismatches: 10, Indels: 23
0.78 0.07 0.16
Matches are distributed among these distances:
29 3 0.03
30 54 0.47
31 35 0.30
32 23 0.20
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.29
Consensus pattern (30 bp):
TTCTCAAAGTCCACGACTCAGTGGCATCTT
Found at i:140166 original size:62 final size:62
Alignment explanation
Indices: 140049--140202 Score: 192
Period size: 62 Copynumber: 2.5 Consensus size: 62
140039 AATACCTTCT
* * *
140049 TAAAGTCCACGACTCAATGGCAAT-CTCTTC-TCAAAGTCCACGACTCAGTGGCATTTTGT-C
1 TAAAGTCCACGACTCAGTGGC-ATCCTTTTCTTCAAAGTCCACGAATCAGTGGCATTTTGTCC
*
140109 TCAAAGTCCACGACTTAGTGGCATCCTTTTCTTCAAAG-CCAACGAATCAGTGGCATTTTGTCC
1 T-AAAGTCCACGACTCAGTGGCATCCTTTTCTTCAAAGTCC-ACGAATCAGTGGCATTTTGTCC
*
140172 TAAAGTCCACGACTCCGTGGCA-CCTTCTTCT
1 TAAAGTCCACGACTCAGTGGCATCCTT-TTCT
140203 AAAGCCCACA
Statistics
Matches: 82, Mismatches: 6, Indels: 10
0.84 0.06 0.10
Matches are distributed among these distances:
60 3 0.04
61 29 0.35
62 48 0.59
63 2 0.02
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (62 bp):
TAAAGTCCACGACTCAGTGGCATCCTTTTCTTCAAAGTCCACGAATCAGTGGCATTTTGTCC
Found at i:140231 original size:33 final size:32
Alignment explanation
Indices: 140188--140306 Score: 163
Period size: 33 Copynumber: 3.7 Consensus size: 32
140178 CCACGACTCC
140188 GTGGC-ACCTTCTTCTAAAGCCCACACAAGTCG
1 GTGGCAACC-TCTTCTAAAGCCCACACAAGTCG
*
140220 GTGGCAACCTTCTTCCAAAGCCCACACAAGTCG
1 GTGGCAACC-TCTTCTAAAGCCCACACAAGTCG
* *
140253 GTGGTAACCACTCTCTAAAGCCCACACAAGTCG
1 GTGGCAACCTCT-TCTAAAGCCCACACAAGTCG
140286 GTGGCAACC-CTTCT-AAGCCCA
1 GTGGCAACCTCTTCTAAAGCCCA
140307 ATATAGCTGG
Statistics
Matches: 80, Mismatches: 5, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
30 7 0.09
31 3 0.04
32 9 0.11
33 61 0.76
ACGTcount: A:0.27, C:0.35, G:0.18, T:0.19
Consensus pattern (32 bp):
GTGGCAACCTCTTCTAAAGCCCACACAAGTCG
Found at i:140357 original size:49 final size:49
Alignment explanation
Indices: 140299--140912 Score: 786
Period size: 49 Copynumber: 12.7 Consensus size: 49
140289 GCAACCCTTC
* * *
140299 TAAGCCCAATATAGCTGGCCCTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * *
140348 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCAT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
140397 TAAGTCCAATATAGCTAGCCTTGAATCAGCATATTGGCACCTTCACCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
140446 TAAGTCCAATGTAGCTGGCCTTGACTCAACACATTGGCA-C--CA---T
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* *
140489 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * *
140538 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCAT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* *
140587 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * *
140636 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCAT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* *
140685 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
140734 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATCGGCACC-TCACCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* *
140782 TAAGTCCAGTGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
140825 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACC--TT-CATCTT
* * *
140877 TAAGTTCAATGTAGCTAGCCTTGAATCAGCACATTG
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTG
140913 ACATCCTTTT
Statistics
Matches: 490, Mismatches: 60, Indels: 27
0.85 0.10 0.05
Matches are distributed among these distances:
43 75 0.15
44 1 0.00
45 1 0.00
46 3 0.01
48 43 0.09
49 331 0.68
50 1 0.00
52 35 0.07
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.30
Consensus pattern (49 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
Found at i:140473 original size:98 final size:98
Alignment explanation
Indices: 140299--140912 Score: 903
Period size: 98 Copynumber: 6.4 Consensus size: 98
140289 GCAACCCTTC
* *
140299 TAAGCCCAATATAGCTGGCCCTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
140364 GGCCTTGACTCAGCACATTGGCACCTTCACCAT
66 GGCCTTGACTCAGCACATTGGCACCTTCACCAT
* *
140397 TAAGTCCAATATAGCTAGCCTTGAATCAGCATATTGGCACCTTCACCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
*
140462 GGCCTTGACTCAACACATTGG------CACCAT
66 GGCCTTGACTCAGCACATTGGCACCTTCACCAT
*
140489 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
140554 GGCCTTGACTCAGCACATTGGCACCTTCACCAT
66 GGCCTTGACTCAGCACATTGGCACCTTCACCAT
*
140587 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
140652 GGCCTTGACTCAGCACATTGGCACCTTCACCAT
66 GGCCTTGACTCAGCACATTGGCACCTTCACCAT
*
140685 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
* * *
140750 GGCCTTGAATCAGCACATCGGCACC-TCACCTT
66 GGCCTTGACTCAGCACATTGGCACCTTCACCAT
* * * *
140782 TAAGTCCAGTGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCCAATATAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
* * * *
140841 GGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
66 GGCCTTGACTCAGCACATTGGCACC--TT-CACCAT
* * * *
140877 TAAGTTCAATGTAGCTAGCCTTGAATCAGCACATTG
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTG
140913 ACATCCTTTT
Statistics
Matches: 483, Mismatches: 23, Indels: 23
0.91 0.04 0.04
Matches are distributed among these distances:
91 41 0.08
92 88 0.18
94 1 0.00
95 38 0.08
97 42 0.09
98 273 0.57
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.30
Consensus pattern (98 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
GGCCTTGACTCAGCACATTGGCACCTTCACCAT
Found at i:140627 original size:190 final size:190
Alignment explanation
Indices: 140299--140865 Score: 887
Period size: 190 Copynumber: 3.0 Consensus size: 190
140289 GCAACCCTTC
* * *
140299 TAAGCCCAATATAGCTGGCCCTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
*
140364 GGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGTCCAATATAGCTAGCCTTGAATCAGCAT
66 GGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
*
140429 ATTGGCACCTTCACCTTTAAGTCCAATGTAGCTGGCCTTGACTCAACACATTGGCACCAT
131 ATTGGCACCTTCACCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCAT
140489 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
140554 GGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
66 GGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
* *
140619 ATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCA
131 ATTGGCACCTTCACCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGG------CACCA
140684 T
190 T
140685 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
* * * * * *
140750 GGCCTTGAATCAGCACATCGGCACC-TCACCTTTAAGTCCAGTGTAGCTGGCCTTGAATCAGCAC
66 GGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
* * *
140814 ATTGG------CACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC
131 ATTGGCACCTTCACCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACC
140866 TTTTCCATCT
Statistics
Matches: 353, Mismatches: 18, Indels: 19
0.91 0.05 0.05
Matches are distributed among these distances:
183 4 0.01
189 38 0.11
190 177 0.50
195 40 0.11
196 94 0.27
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (190 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
GGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
ATTGGCACCTTCACCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCAT
Found at i:140900 original size:52 final size:55
Alignment explanation
Indices: 140822--140943 Score: 169
Period size: 52 Copynumber: 2.3 Consensus size: 55
140812 ACATTGGCAC
* * *
140822 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC-TTTTC-CAT
1 CTTTAAGTCCAATATAGCTAGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* *
140874 CTTTAAGTTCAATGTAGCTAGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTAGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
*
140929 CTTTAAGCCCAATAT
1 CTTTAAGTCCAATAT
140944 CGTTGGCCGT
Statistics
Matches: 59, Mismatches: 8, Indels: 3
0.84 0.11 0.04
Matches are distributed among these distances:
52 37 0.63
53 2 0.03
54 5 0.08
55 15 0.25
ACGTcount: A:0.26, C:0.25, G:0.13, T:0.36
Consensus pattern (55 bp):
CTTTAAGTCCAATATAGCTAGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
Found at i:140957 original size:55 final size:52
Alignment explanation
Indices: 140822--140959 Score: 168
Period size: 52 Copynumber: 2.6 Consensus size: 52
140812 ACATTGGCAC
* *
140822 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACACCTTTTCCAT
* * *
140874 CTTTAAGTTCAATGTAGCTAGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACA-CC-TTTTC-CAT
* * * *
140929 CTTTAAGCCCAATATCGTTGGCCGTGAATCA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCA
140960 ACATATTGGC
Statistics
Matches: 71, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
52 37 0.52
53 2 0.03
54 5 0.07
55 27 0.38
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.35
Consensus pattern (52 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACACCTTTTCCAT
Found at i:141128 original size:169 final size:173
Alignment explanation
Indices: 140822--141208 Score: 455
Period size: 169 Copynumber: 2.2 Consensus size: 173
140812 ACATTGGCAC
* * *
140822 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTT-CATCTTTAAGTCCAAT
* *
140887 GTAGCTAGCCTTGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCC
65 ATAGCTAGCC-TGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAACCCAATATCGTTGGCC
* * *
140952 GTGAATCAACATATTGG-CATCTTTATCACTTTTC-TCATCTTCAT
129 GTGAATCAACATATTGGTCAT-TTTATCACTCTCCATCATCATCAT
*
140996 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC-TTT-ATCTTTAAGTCCAATA
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTTCATCTTTAAGTCCAATA
* ** * ** *
141059 TCGCTAGCC-GCATATTGGCTC-TT-TTATCCTTTTTCTCATCTTTAAACCCAATATCGTTGGCT
66 TAGCTAGCCTG-A-ATCAGCACATTGACATCCTTTTTCTCATCTTTAAACCCAATATCGTTGGCC
* * *
141121 GTGAATCAACGTATTGGTCCTTTTATCACTCTCCATCCTCATCAT
129 GTGAATCAACATATTGGTCATTTTATCACTCTCCATCATCATCAT
* * * * * *
141166 CTTTAAGTCTAGTGTGGCAGGCCTTGAATCTGCACAGTGGCAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
141209 ACTACAAAAC
Statistics
Matches: 184, Mismatches: 25, Indels: 12
0.83 0.11 0.05
Matches are distributed among these distances:
169 63 0.34
170 50 0.27
171 27 0.15
173 3 0.02
174 41 0.22
ACGTcount: A:0.23, C:0.26, G:0.15, T:0.36
Consensus pattern (173 bp):
CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTTCATCTTTAAGTCCAATA
TAGCTAGCCTGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAACCCAATATCGTTGGCCGT
GAATCAACATATTGGTCATTTTATCACTCTCCATCATCATCAT
Found at i:141819 original size:25 final size:25
Alignment explanation
Indices: 141791--141880 Score: 64
Period size: 26 Copynumber: 3.6 Consensus size: 25
141781 TGTTTTTGAC
141791 TTTTTGATTGATTTTTATTTTTCTTT
1 TTTTTGATTGATTTTTATTTTTC-TT
**
141817 TTTTTGA-AAATTTTTTACTTTTT-TT
1 TTTTTGATTGA-TTTTTA-TTTTTCTT
*
141842 ATTTTGATT--TTTTT-TGTTTTCTT
1 TTTTTGATTGATTTTTAT-TTTTCTT
141865 TTATTTGATTTGATTT
1 TT-TTTGA-TTGATTT
141881 GATTTTTTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 17
0.69 0.07 0.24
Matches are distributed among these distances:
21 1 0.02
22 4 0.08
23 8 0.16
24 5 0.10
25 11 0.22
26 13 0.26
27 8 0.16
ACGTcount: A:0.14, C:0.03, G:0.08, T:0.74
Consensus pattern (25 bp):
TTTTTGATTGATTTTTATTTTTCTT
Found at i:141854 original size:24 final size:24
Alignment explanation
Indices: 141827--141875 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
141817 TTTTTGAAAA
141827 TTTTTTACTTT-TTTTATTTTGATT
1 TTTTTTACTTTCTTTTA-TTTGATT
**
141851 TTTTTTGTTTTCTTTTATTTGATT
1 TTTTTTACTTTCTTTTATTTGATT
141875 T
1 T
141876 GATTTGATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 17 0.77
25 5 0.23
ACGTcount: A:0.10, C:0.04, G:0.06, T:0.80
Consensus pattern (24 bp):
TTTTTTACTTTCTTTTATTTGATT
Found at i:141881 original size:24 final size:25
Alignment explanation
Indices: 141835--141891 Score: 73
Period size: 24 Copynumber: 2.3 Consensus size: 25
141825 AATTTTTTAC
**
141835 TTTTTTTATTTTGATTTTTTTTG-T
1 TTTTTTTATTTTGATTTGATTTGAT
141859 TTTCTTTTA-TTTGATTTGATTTGAT
1 TTT-TTTTATTTTGATTTGATTTGAT
141884 TTTTTTTA
1 TTTTTTTA
141892 CATAGGATGG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 20 0.69
25 9 0.31
ACGTcount: A:0.12, C:0.02, G:0.09, T:0.77
Consensus pattern (25 bp):
TTTTTTTATTTTGATTTGATTTGAT
Found at i:147234 original size:20 final size:19
Alignment explanation
Indices: 147188--147243 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 19
147178 AAAACCCTTA
**
147188 AATGTATCGATACACAATTC
1 AATGTATCGATACA-TGTTC
*
147208 AAAGTATCGATACATGTTGC
1 AATGTATCGATACATGTT-C
*
147228 AATGTATTGATACATG
1 AATGTATCGATACATG
147244 AAAAAGATGT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
19 2 0.07
20 28 0.93
ACGTcount: A:0.38, C:0.14, G:0.16, T:0.32
Consensus pattern (19 bp):
AATGTATCGATACATGTTC
Found at i:147320 original size:13 final size:13
Alignment explanation
Indices: 147302--147327 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
147292 TACAGCAAGT
147302 ATGTATCGATACA
1 ATGTATCGATACA
147315 ATGTATCGATACA
1 ATGTATCGATACA
147328 CAAAAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:149587 original size:21 final size:21
Alignment explanation
Indices: 149554--149598 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
149544 TTGCAAGTTG
*
149554 AAATAAATAAGTTGGCTAATGA
1 AAATAAATAAGTTAGCTAA-GA
*
149576 AAAT-AATGAGTTAGCTAAGA
1 AAATAAATAAGTTAGCTAAGA
149596 AAA
1 AAA
149599 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 12 0.57
22 4 0.19
ACGTcount: A:0.53, C:0.04, G:0.18, T:0.24
Consensus pattern (21 bp):
AAATAAATAAGTTAGCTAAGA
Found at i:151422 original size:15 final size:15
Alignment explanation
Indices: 151402--151432 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
151392 TAAAAATGTC
*
151402 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
151417 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
151432 C
1 C
151433 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:153530 original size:13 final size:13
Alignment explanation
Indices: 153512--153537 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
153502 ACATTTTTCT
153512 TTGTATCGATACA
1 TTGTATCGATACA
153525 TTGTATCGATACA
1 TTGTATCGATACA
153538 GGGTGATTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:156013 original size:20 final size:19
Alignment explanation
Indices: 155967--156022 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 19
155957 AAAACCCTTA
**
155967 AATGTATCGATACACAATTC
1 AATGTATCGATACA-TGTTC
*
155987 AAAGTATCGATACATGTTGC
1 AATGTATCGATACATGTT-C
156007 AATGTATCGATACATG
1 AATGTATCGATACATG
156023 AAAAAGATGT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
19 2 0.06
20 29 0.94
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (19 bp):
AATGTATCGATACATGTTC
Found at i:156099 original size:13 final size:13
Alignment explanation
Indices: 156081--156106 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
156071 TACAGCAAGT
156081 ATGTATCGATACA
1 ATGTATCGATACA
156094 ATGTATCGATACA
1 ATGTATCGATACA
156107 CAAAAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:166045 original size:32 final size:32
Alignment explanation
Indices: 166009--166076 Score: 127
Period size: 32 Copynumber: 2.1 Consensus size: 32
165999 GGCCAATTTG
*
166009 AAAGAAAACTTCTTATGAACTTTACAAAGGAA
1 AAAGAAAACTTCTTAAGAACTTTACAAAGGAA
166041 AAAGAAAACTTCTTAAGAACTTTACAAAGGAA
1 AAAGAAAACTTCTTAAGAACTTTACAAAGGAA
166073 AAAG
1 AAAG
166077 GCTTAACATA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.53, C:0.12, G:0.13, T:0.22
Consensus pattern (32 bp):
AAAGAAAACTTCTTAAGAACTTTACAAAGGAA
Found at i:169356 original size:74 final size:74
Alignment explanation
Indices: 169156--169369 Score: 211
Period size: 74 Copynumber: 2.9 Consensus size: 74
169146 CACGTCGCGA
* * *
169156 CAAAGAGCATGACA-CTTTTTCTTTTTATTCAAAGCCTACATAAGCTGGTGGCACCCTTTATCTT
1 CAAAGAGCAAGACACCTTTTTCTTTTTTTTCAAAGCCAACATAAGCTGGTGGCA-CCTTTATCTT
*
169220 TTTCAATCCT
65 TTTCAATACT
* * * ** * * *
169230 CAAAAAGTAGGATGCC-TCTTCTTTTCTTT-AAAGCCAACATAAGTTGGTGGCACCTTTATCCTT
1 CAAAGAGCAAGACACCTTTTTCTTTTTTTTCAAAGCCAACATAAGCTGGTGGCACCTTTAT-CTT
*
169293 TTT-AGTACT
65 TTTCAATACT
** * *
169302 TTAAGAGCAAGACACCTTTTTCTTTTTTTTCAAAGCCCACACAAGCTGGTGGCACCATTTATACT
1 CAAAGAGCAAGACACCTTTTTCTTTTTTTTCAAAGCCAACATAAGCTGGTGGCACC-TTTAT-CT
169367 TTT
64 TTT
169370 CAAAGAGCAG
Statistics
Matches: 110, Mismatches: 25, Indels: 9
0.76 0.17 0.06
Matches are distributed among these distances:
72 20 0.18
73 38 0.35
74 41 0.37
75 11 0.10
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.37
Consensus pattern (74 bp):
CAAAGAGCAAGACACCTTTTTCTTTTTTTTCAAAGCCAACATAAGCTGGTGGCACCTTTATCTTT
TTCAATACT
Found at i:169850 original size:13 final size:13
Alignment explanation
Indices: 169832--169856 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
169822 ATATTGCTTA
169832 GTATCGATACATT
1 GTATCGATACATT
169845 GTATCGATACAT
1 GTATCGATACAT
169857 GTTTTTGGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:171548 original size:3 final size:3
Alignment explanation
Indices: 171540--171565 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
171530 AACCATCAAA
171540 GAT GAT GAT GAT GAT GAT GAT GAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GA
171566 AGTTGACTCG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.35, T:0.31
Consensus pattern (3 bp):
GAT
Found at i:172010 original size:15 final size:14
Alignment explanation
Indices: 171990--172026 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 14
171980 AGAGATAAAT
171990 AAAAAATTCTTGAGA
1 AAAAAATTCTTGA-A
172005 AAAAAATTCTTGAA
1 AAAAAATTCTTGAA
172019 AAGAAAAT
1 AA-AAAAT
172027 AGTTGAACTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 3 0.14
15 18 0.86
ACGTcount: A:0.59, C:0.05, G:0.11, T:0.24
Consensus pattern (14 bp):
AAAAAATTCTTGAA
Found at i:172981 original size:20 final size:20
Alignment explanation
Indices: 172938--172991 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 20
172928 GTTATAAGTA
*
172938 ATGTATCGATACAATTTATC
1 ATGTATCGATACAATTCATC
*
172958 ATGTATCGATACAATGTCCT-
1 ATGTATCGATACAAT-TCATC
*
172978 ATGTATCTATACAA
1 ATGTATCGATACAA
172992 ACAGTGGTAG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
20 28 0.93
21 2 0.07
ACGTcount: A:0.35, C:0.17, G:0.11, T:0.37
Consensus pattern (20 bp):
ATGTATCGATACAATTCATC
Found at i:173067 original size:19 final size:19
Alignment explanation
Indices: 173021--173075 Score: 74
Period size: 19 Copynumber: 2.8 Consensus size: 19
173011 TGCCAGTTTG
**
173021 ATGTATCGATACAATTGTCC
1 ATGTATCGATACAA-TGAAC
*
173041 ACGTATCGATACAATGAAC
1 ATGTATCGATACAATGAAC
173060 ATGTATCGATACAATG
1 ATGTATCGATACAATG
173076 TATCGATACA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 18 0.58
20 13 0.42
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.29
Consensus pattern (19 bp):
ATGTATCGATACAATGAAC
Found at i:173078 original size:13 final size:13
Alignment explanation
Indices: 173060--173086 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
173050 TACAATGAAC
173060 ATGTATCGATACA
1 ATGTATCGATACA
173073 ATGTATCGATACA
1 ATGTATCGATACA
173086 A
1 A
173087 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:173102 original size:33 final size:32
Alignment explanation
Indices: 173043--173105 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 32
173033 AATTGTCCAC
*
173043 GTATCGATACAATGAACATGTATCGATACAAT
1 GTATCGATACAAAGAACATGTATCGATACAAT
173075 GTATCGATACAAAGCATA-ATGTATCGATACA
1 GTATCGATACAAAG-A-ACATGTATCGATACA
173106 TCTGGGTGTG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 13 0.46
33 14 0.50
34 1 0.04
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.27
Consensus pattern (32 bp):
GTATCGATACAAAGAACATGTATCGATACAAT
Found at i:173647 original size:22 final size:22
Alignment explanation
Indices: 173622--173663 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
173612 AGATAAACAT
173622 ATTTC-TCCCCATTTATCAAAGC
1 ATTTCTTCCCC-TTTATCAAAGC
*
173644 ATTTCTTCCCCTTTGTCAAA
1 ATTTCTTCCCCTTTATCAAA
173664 TCAAAAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.24, C:0.31, G:0.05, T:0.40
Consensus pattern (22 bp):
ATTTCTTCCCCTTTATCAAAGC
Found at i:175557 original size:13 final size:13
Alignment explanation
Indices: 175539--175563 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
175529 AGTAACCCAT
175539 GTATCGATACAAC
1 GTATCGATACAAC
175552 GTATCGATACAA
1 GTATCGATACAA
175564 GGAATGTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.20, G:0.16, T:0.24
Consensus pattern (13 bp):
GTATCGATACAAC
Found at i:180406 original size:16 final size:16
Alignment explanation
Indices: 180385--180419 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
180375 TCGGTAAACC
180385 GATCAGACATCTCCTT
1 GATCAGACATCTCCTT
180401 GATCAGACATCTCCTT
1 GATCAGACATCTCCTT
180417 GAT
1 GAT
180420 ATTTTCATCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.26, C:0.29, G:0.14, T:0.31
Consensus pattern (16 bp):
GATCAGACATCTCCTT
Found at i:181801 original size:20 final size:20
Alignment explanation
Indices: 181770--181824 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 20
181760 CTGCCAGTTT
* **
181770 CATGCATCGATACAATTGTC
1 CATGTATCGATACAATTGAA
*
181790 CATGTATTGATACAA-TGAA
1 CATGTATCGATACAATTGAA
181809 CATGTATCGATACAAT
1 CATGTATCGATACAAT
181825 GTATCGATAC
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
19 16 0.55
20 13 0.45
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:181828 original size:13 final size:13
Alignment explanation
Indices: 181810--181836 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
181800 TACAATGAAC
181810 ATGTATCGATACA
1 ATGTATCGATACA
181823 ATGTATCGATACA
1 ATGTATCGATACA
181836 A
1 A
181837 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:183968 original size:19 final size:19
Alignment explanation
Indices: 183944--184039 Score: 108
Period size: 19 Copynumber: 5.7 Consensus size: 19
183934 AAACAATAAA
183944 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGTGT
183963 TGTATCGATAC--AA-TG-
1 TGTATCGATACATAAGTGT
183978 T-T-TCGATACATAAGTGT
1 TGTATCGATACATAAGTGT
183995 TGTATCGATAC--AA----
1 TGTATCGATACATAAGTGT
184008 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGTGT
184027 TGTATCGATACAT
1 TGTATCGATACAT
184040 TATTCAATGT
Statistics
Matches: 65, Mismatches: 0, Indels: 24
0.73 0.00 0.27
Matches are distributed among these distances:
13 18 0.28
14 1 0.02
15 5 0.08
16 4 0.06
17 5 0.08
18 1 0.02
19 31 0.48
ACGTcount: A:0.32, C:0.12, G:0.19, T:0.36
Consensus pattern (19 bp):
TGTATCGATACATAAGTGT
Found at i:183984 original size:32 final size:32
Alignment explanation
Indices: 183942--184038 Score: 185
Period size: 32 Copynumber: 3.0 Consensus size: 32
183932 ACAAACAATA
183942 AATGTATCGATACATAAGTGTTGTATCGATAC
1 AATGTATCGATACATAAGTGTTGTATCGATAC
*
183974 AATGTTTCGATACATAAGTGTTGTATCGATAC
1 AATGTATCGATACATAAGTGTTGTATCGATAC
184006 AATGTATCGATACATAAGTGTTGTATCGATAC
1 AATGTATCGATACATAAGTGTTGTATCGATAC
184038 A
1 A
184039 TTATTCAATG
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 63 1.00
ACGTcount: A:0.34, C:0.12, G:0.19, T:0.35
Consensus pattern (32 bp):
AATGTATCGATACATAAGTGTTGTATCGATAC
Found at i:184084 original size:33 final size:33
Alignment explanation
Indices: 184027--184090 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
184017 ACATAAGTGT
*
184027 TGTATCGATACATTATTCAATGTATTGATACAG
1 TGTATCGATACATTATTCAATGTATCGATACAG
**
184060 TGTATCGATACATTGA-TCTTTGTATCGATAC
1 TGTATCGATACATT-ATTCAATGTATCGATAC
184091 CTCTGGGAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
33 26 0.96
34 1 0.04
ACGTcount: A:0.30, C:0.14, G:0.16, T:0.41
Consensus pattern (33 bp):
TGTATCGATACATTATTCAATGTATCGATACAG
Found at i:187745 original size:10 final size:10
Alignment explanation
Indices: 187730--187762 Score: 57
Period size: 10 Copynumber: 3.2 Consensus size: 10
187720 AGTAAGATGT
187730 GGACTAAATG
1 GGACTAAATG
187740 GGACTAAATGG
1 GGACTAAAT-G
187751 GGACTAAATG
1 GGACTAAATG
187761 GG
1 GG
187763 TGTTTAGGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 12 0.55
11 10 0.45
ACGTcount: A:0.36, C:0.09, G:0.36, T:0.18
Consensus pattern (10 bp):
GGACTAAATG
Found at i:187755 original size:11 final size:11
Alignment explanation
Indices: 187730--187762 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
187720 AGTAAGATGT
187730 GGACTAAAT-G
1 GGACTAAATGG
187740 GGACTAAATGG
1 GGACTAAATGG
187751 GGACTAAATGG
1 GGACTAAATGG
187762 G
1 G
187763 TGTTTAGGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 9 0.41
11 13 0.59
ACGTcount: A:0.36, C:0.09, G:0.36, T:0.18
Consensus pattern (11 bp):
GGACTAAATGG
Found at i:193124 original size:74 final size:71
Alignment explanation
Indices: 193046--193218 Score: 193
Period size: 71 Copynumber: 2.4 Consensus size: 71
193036 CAAGCAGGTA
* * * * *
193046 GCACCCTTCATCTTTTTCAGTCCTTAAAAAATAGGACGTCTTTTCTTTTTCTTGAAAGTCCACAA
1 GCACCTTTTATCTTTTTCAGTCCTCAAAAAATAGGAC-AC-CTT-TTTTTCTTGAAAGTCCACAA
193111 AAGTTGGTG
63 AAGTTGGTG
* * * * * * * *
193120 GCACCTTTTATCGTTTTCAATTCTCAAAGACTAGGACACCTTTTTTTCTTTAAAGTCCATACAAG
1 GCACCTTTTATCTTTTTCAGTCCTCAAAAAATAGGACACCTTTTTTTCTTGAAAGTCCACAAAAG
193185 TTGGTG
66 TTGGTG
*
193191 GCACTTTTTATCTTTTTCAGTCCTCAAA
1 GCACCTTTTATCTTTTTCAGTCCTCAAA
193219 GTACAGGATG
Statistics
Matches: 82, Mismatches: 17, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
71 50 0.61
72 2 0.02
73 1 0.01
74 29 0.35
ACGTcount: A:0.25, C:0.22, G:0.13, T:0.40
Consensus pattern (71 bp):
GCACCTTTTATCTTTTTCAGTCCTCAAAAAATAGGACACCTTTTTTTCTTGAAAGTCCACAAAAG
TTGGTG
Found at i:193187 original size:71 final size:71
Alignment explanation
Indices: 193091--193237 Score: 197
Period size: 71 Copynumber: 2.1 Consensus size: 71
193081 ACGTCTTTTC
*
193091 TTTTTCTTGAAAGTCCACAAAAGTTGGTGGCACCTTTTATCGTTTTCAATTCTCAAAG-ACTAGG
1 TTTTTCTTGAAAGTCCACAAAAGTTGGTGGCACCTTTTATCGTTTTCAATCCTCAAAGTAC-AGG
193155 ACACCTT
65 ACACCTT
* * * * * *
193162 TTTTTCTTTAAAGTCCATACAAGTTGGTGGCACTTTTTATCTTTTTCAGTCCTCAAAGTACAGGA
1 TTTTTCTTGAAAGTCCACAAAAGTTGGTGGCACCTTTTATCGTTTTCAATCCTCAAAGTACAGGA
**
193227 TGCCTT
66 CACCTT
193233 TTTTT
1 TTTTT
193238 TTTCAAAACC
Statistics
Matches: 66, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
71 64 0.97
72 2 0.03
ACGTcount: A:0.24, C:0.20, G:0.15, T:0.41
Consensus pattern (71 bp):
TTTTTCTTGAAAGTCCACAAAAGTTGGTGGCACCTTTTATCGTTTTCAATCCTCAAAGTACAGGA
CACCTT
Found at i:193541 original size:148 final size:147
Alignment explanation
Indices: 193166--193556 Score: 440
Period size: 148 Copynumber: 2.7 Consensus size: 147
193156 CACCTTTTTT
* * * * *
193166 TCTTTAAAGTCCATACAAGTTGGTGGCACTTTTTATCTTTTTCAGTCCTCAAAGTA-CAGGATGC
1 TCTTTAAAGCCCATACAAGCTAGTGGCACCTTTTATCTTTTTCAATCCTCAAAG-AGCAGGATG-
* * *
193230 CTTTTT-TTTTTC--AAAACCCACACAAGCTAGTGACAGCCTTTATCCTTTTTAGTCCTCAAAAA
64 CTTTTTCTTTTTCTTAAAGCCCACACAAGCTAGTGACAACCTTTATCCTTTTTAGTCATCAAAAA
*
193292 GTAAGATACCTTTTATTTT
129 GTAAGATACCTTTTATTTG
* ** * * *
193311 TCTTTAAAACTTA-ACAAGCTAGTGGCACCCTTTATCTTTTTCACTCCTCAAAGAGCAGGATGCC
1 TCTTTAAAGCCCATACAAGCTAGTGGCACCTTTTATCTTTTTCAATCCTCAAAGAGCAGGATGCT
193375 TTTTCTTTTTCTTCAAAGCCCACACAAGCT-GATGACAACCTTTAT-CTTTTTAAGTCAT-AAAA
66 TTTTCTTTTTCTT-AAAGCCCACACAAGCTAG-TGACAACCTTTATCCTTTTT-AGTCATCAAAA
* * *
193437 GAG-CAGTATGCCTTTTCTTTG
128 -AGTAAG-ATACCTTTTATTTG
* * * * *
193458 TCTTCAAAGCCCATACAAGCTAGTGGCACCTTTTAGCTTTTTCAATCCTTAAAGAGCAAGACGCT
1 TCTTTAAAGCCCATACAAGCTAGTGGCACCTTTTATCTTTTTCAATCCTCAAAGAGCAGGATGCT
193523 TTTTCTTTTTCTTTAAAGCCCACACAAGCTAGTG
66 TTTTCTTTTTC-TTAAAGCCCACACAAGCTAGTG
193557 GCATTTATCT
Statistics
Matches: 206, Mismatches: 28, Indels: 21
0.81 0.11 0.08
Matches are distributed among these distances:
143 6 0.03
144 48 0.23
145 9 0.04
146 13 0.06
147 54 0.26
148 73 0.35
149 3 0.01
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.37
Consensus pattern (147 bp):
TCTTTAAAGCCCATACAAGCTAGTGGCACCTTTTATCTTTTTCAATCCTCAAAGAGCAGGATGCT
TTTTCTTTTTCTTAAAGCCCACACAAGCTAGTGACAACCTTTATCCTTTTTAGTCATCAAAAAGT
AAGATACCTTTTATTTG
Found at i:193557 original size:74 final size:74
Alignment explanation
Indices: 193010--193559 Score: 396
Period size: 74 Copynumber: 7.5 Consensus size: 74
193000 CTTACAACAT
* * * * * * *
193010 CTTTTTCTTTATCTTTAAAGCACACACAAGC-AGGTAGCACCCTTCATCTTTTTCAGTCCTTAAA
1 CTTTTTCTTTTTCTTTAAAGCCCACACAAGCTA-GTGGCACCTTTTATCTTTTTCAATCCTCAAA
* ** *
193074 AAATAGGACG
65 GAGCAGGATG
* * * * * * *
193084 -TCTTTTCTTTTTCTTGAAAGTCCACAAAAGTTGGTGGCACCTTTTATCGTTTTCAATTCTCAAA
1 CT-TTTTCTTTTTCTTTAAAGCCCACACAAGCTAGTGGCACCTTTTATCTTTTTCAATCCTCAAA
193148 GA-CTAGGA--
65 GAGC-AGGATG
*** * * * * * *
193156 CACCTT-TTTTTCTTTAAAGTCCATACAAGTTGGTGGCACTTTTTATCTTTTTCAGTCCTCAAAG
1 CTTTTTCTTTTTCTTTAAAGCCCACACAAGCTAGTGGCACCTTTTATCTTTTTCAATCCTCAAAG
193220 TA-CAGGATG
66 -AGCAGGATG
* * *
193229 CCTTTTT-TTTTTC---AAAACCCACACAAGCTAGTGACAGCC-TTTATCCTTTTT-AGTCCTCA
1 -CTTTTTCTTTTTCTTTAAAGCCCACACAAGCTAGTGGCA-CCTTTTAT-CTTTTTCAATCCTCA
* * * *
193288 AAAAGTAAGATA
63 AAGAGCAGGATG
* * * ** * *
193300 CCTTTTATTTTTCTTTAAAACTTA-ACAAGCTAGTGGCACCCTTTATCTTTTTCACTCCTCAAAG
1 CTTTTTCTTTTTCTTTAAAGCCCACACAAGCTAGTGGCACCTTTTATCTTTTTCAATCCTCAAAG
193364 AGCAGGATG
66 AGCAGGATG
* * * * *
193373 CCTTTTCTTTTTCTTCAAAGCCCACACAAGCT-GATGACAACC-TTTATCTTTTT-AAGTCATAA
1 CTTTTTCTTTTTCTTTAAAGCCCACACAAGCTAG-TGGC-ACCTTTTATCTTTTTCAA-TCCTCA
*
193435 AAGAGCAGTATG
63 AAGAGCAGGATG
* * * * * *
193447 CCTTTTCTTTGTCTTCAAAGCCCATACAAGCTAGTGGCACCTTTTAGCTTTTTCAATCCTTAAAG
1 CTTTTTCTTTTTCTTTAAAGCCCACACAAGCTAGTGGCACCTTTTATCTTTTTCAATCCTCAAAG
* *
193512 AGCAAGACG
66 AGCAGGATG
193521 CTTTTTCTTTTTCTTTAAAGCCCACACAAGCTAGTGGCA
1 CTTTTTCTTTTTCTTTAAAGCCCACACAAGCTAGTGGCA
193560 TTTATCTAGG
Statistics
Matches: 380, Mismatches: 72, Indels: 48
0.76 0.14 0.10
Matches are distributed among these distances:
70 6 0.02
71 97 0.26
72 19 0.05
73 58 0.15
74 194 0.51
75 6 0.02
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.37
Consensus pattern (74 bp):
CTTTTTCTTTTTCTTTAAAGCCCACACAAGCTAGTGGCACCTTTTATCTTTTTCAATCCTCAAAG
AGCAGGATG
Found at i:196904 original size:88 final size:87
Alignment explanation
Indices: 196682--197003 Score: 288
Period size: 87 Copynumber: 3.7 Consensus size: 87
196672 ACAATTTTGA
* * * * *
196682 GAAACTTCGTCCCTACTATTCTGAAGGGATACTCTAACCCTGTTCTAACAAAAATTCAAATTTAC
1 GAAACTCCATCCCCACTATTTTGAAGGGATACTCTAACCCCGTTCTAACAAAAATTCAAATTTAC
*
196747 TTCATGGAATTTTACCTTTAGG
66 TTCATGGAATTTTACATTTAGG
* * * * * * *
196769 GAAACTCTATCCCCACTCTTTCT-AAGGAACACTCCAACCTCGCTCTAACAAAAATTCAAATATT
1 GAAACTCCATCCCCACTATTT-TGAAGGGATACTCTAACCCCGTTCTAACAAAAATTCAAAT-TT
** * ** *
196833 TTTTCGTGGAATTTTGTATTTTGG
64 ACTTCATGGAATTTTACATTTAGG
* * * *
196857 GAAACTCCATTCTCACTATTTTGAGGGGATATTCTAACCCCGTTCTAACAAAAATTCAAATTTAC
1 GAAACTCCATCCCCACTATTTTGAAGGGATACTCTAACCCCGTTCTAACAAAAATTCAAATTTAC
* * * *
196922 TTCATGAAATTTCACCTTTGGG
66 TTCATGGAATTTTACATTTAGG
* ** ** * * * *
196944 GAAACTCCAT-CCCATTCCTCCGAGGGGACACTCTAACCCTGCTCTAACAAAAATTCAAAT
1 GAAACTCCATCCCCACTATTTTGAAGGGATACTCTAACCCCGTTCTAACAAAAATTCAAAT
197004 ATTTCTTTGT
Statistics
Matches: 183, Mismatches: 49, Indels: 7
0.77 0.21 0.03
Matches are distributed among these distances:
86 40 0.22
87 75 0.41
88 68 0.37
ACGTcount: A:0.31, C:0.25, G:0.12, T:0.32
Consensus pattern (87 bp):
GAAACTCCATCCCCACTATTTTGAAGGGATACTCTAACCCCGTTCTAACAAAAATTCAAATTTAC
TTCATGGAATTTTACATTTAGG
Found at i:197059 original size:174 final size:175
Alignment explanation
Indices: 196696--197076 Score: 480
Period size: 174 Copynumber: 2.2 Consensus size: 175
196686 CTTCGTCCCT
* * * *
196696 ACTATTCTGAAGGGATACTCTAACCCTGTTCTAACAAAAATTCAAATTTACTTCATGGAATTTTA
1 ACTATTCTGAGGGGATACTCTAACCCCGTTCTAACAAAAATTCAAATTTACTTCATGAAATTTCA
* * * *
196761 CCTTTAGGGAAACTCTATCCCCACTCTTTCTAAGGAACACTCCAACCTCGCTCTAACAAAAATTC
66 CCTTTAGGGAAACTCCATCCCCACTCCTCCGAAGGAACACTCCAACCTCGCTCTAACAAAAATTC
** * * ** *
196826 AAATATTTTTTCGTGGAATTTTGTATTTTGGGAAACTCCATTCTC
131 AAATATTTTTTCGTAAAATTATATATTCAGGGAAACTCCATCCTC
* *
196871 ACTATTTTGAGGGGATATTCTAACCCCGTTCTAACAAAAATTCAAATTTACTTCATGAAATTTCA
1 ACTATTCTGAGGGGATACTCTAACCCCGTTCTAACAAAAATTCAAATTTACTTCATGAAATTTCA
* * * * *
196936 CCTTTGGGGAAACTCCAT-CCCATTCCTCCGAGGGGACACTCTAACC-CTGCTCTAACAAAAATT
66 CCTTTAGGGAAACTCCATCCCCACTCCTCCGAAGGAACACTCCAACCTC-GCTCTAACAAAAATT
*
196999 CAAATATTTCTTT-GTAAAATTATATCTTCAGGGAAACTCCATCCTC
130 CAAATATTT-TTTCGTAAAATTATATATTCAGGGAAACTCCATCCTC
* * * *
197045 ACTATTCCGAGGGGATACCCTAATCTCGTTCT
1 ACTATTCTGAGGGGATACTCTAACCCCGTTCT
197077 TCATAAAAAA
Statistics
Matches: 175, Mismatches: 29, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
173 1 0.01
174 96 0.55
175 78 0.45
ACGTcount: A:0.30, C:0.24, G:0.12, T:0.33
Consensus pattern (175 bp):
ACTATTCTGAGGGGATACTCTAACCCCGTTCTAACAAAAATTCAAATTTACTTCATGAAATTTCA
CCTTTAGGGAAACTCCATCCCCACTCCTCCGAAGGAACACTCCAACCTCGCTCTAACAAAAATTC
AAATATTTTTTCGTAAAATTATATATTCAGGGAAACTCCATCCTC
Found at i:198702 original size:51 final size:50
Alignment explanation
Indices: 198640--198776 Score: 150
Period size: 50 Copynumber: 2.7 Consensus size: 50
198630 ATTTAATAGG
* * * * * *
198640 ATGTATGGATACATTGAAGAATGTATCGATACATTTCGG-TCAAAAACTAGA
1 ATGTATCGATACAATAAAAAATGTAACGATACATTT-GGAT-AAAAACCAGA
* * *
198691 ATGTATCGATACAATAAAAAATATAACGATACATTTGGATTAAACCCAGA
1 ATGTATCGATACAATAAAAAATGTAACGATACATTTGGATAAAAACCAGA
* *
198741 ATGCATCGATACAATAAACAATGTAACGATACATTT
1 ATGTATCGATACAATAAAAAATGTAACGATACATTT
198777 TCTTTCTAGA
Statistics
Matches: 73, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
50 42 0.58
51 31 0.42
ACGTcount: A:0.44, C:0.14, G:0.15, T:0.28
Consensus pattern (50 bp):
ATGTATCGATACAATAAAAAATGTAACGATACATTTGGATAAAAACCAGA
Found at i:200041 original size:13 final size:13
Alignment explanation
Indices: 200023--200048 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
200013 CAATTTTTTG
200023 TGTATCGATACAT
1 TGTATCGATACAT
200036 TGTATCGATACAT
1 TGTATCGATACAT
200049 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:200132 original size:20 final size:20
Alignment explanation
Indices: 200087--200162 Score: 73
Period size: 20 Copynumber: 3.8 Consensus size: 20
200077 CTGCCAAGAA
***
200087 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGAATC
200108 ATGTATCGATACATTGCAA-C
1 ATGTATCGATACATTG-AATC
* *
200128 ATGTATCGATACTTTGAATT
1 ATGTATCGATACATTGAATC
*
200148 GTGTATCGATACATT
1 ATGTATCGATACATT
200163 TAAGGGTTTT
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
19 2 0.04
20 30 0.65
21 14 0.30
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.41
Consensus pattern (20 bp):
ATGTATCGATACATTGAATC
Found at i:202200 original size:13 final size:13
Alignment explanation
Indices: 202182--202207 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
202172 ATAATCACCC
202182 TGTATCGATACAA
1 TGTATCGATACAA
202195 TGTATCGATACAA
1 TGTATCGATACAA
202208 AGAAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:204831 original size:906 final size:907
Alignment explanation
Indices: 203079--204897 Score: 3613
Period size: 906 Copynumber: 2.0 Consensus size: 907
203069 AGGGAGGATT
203079 CCTTAGGGTACCAAAGACCTAGATTTGGAGTATCTCGTAAATACCTAAAAATTCTTTTTACGGCA
1 CCTTAGGGTACCAAAGACCTAGATTTGGAGTATCTCGTAAATACCTAAAAATTCTTTTTACGGCA
203144 TGCAAATGAGACTCCCTAGGTGCAGATTGAAAACGGGCACACAAACATACACTAAACATAATATC
66 TGCAAATGAGACTCCCTAGGTGCAGATTGAAAACGGGCACACAAACATACACTAAACATAATATC
203209 CGGTCTACTAGCAGTAAGATATAATAATGAGCCAATCATAGACCTATAAAGTTTAGTGTCGATAA
131 CGGTCTACTAGCAGTAAGATATAATAATGAGCCAATCATAGACCTATAAAGTTTAGTGTCGATAA
203274 TGTTACCCTCCTTCATCTTTTTCAAGCTTCGTTGAAGTACTCATCGGAGTTTCACATGGTTTGAC
196 TGTTACCCTCCTTCATCTTTTTCAAGCTTCGTTGAAGTACTCATCGGAGTTTCACATGGTTTGAC
203339 TTGGTCCATTTGAAATCTTTTGAGTAGTTCTTTTGTGTACTTGGCTTGATTGATGAAGATCCCGT
261 TTGGTCCATTTGAAATCTTTTGAGTAGTTCTTTTGTGTACTTGGCTTGATTGATGAAGATCCCGT
203404 CTTTGGTTTGCCTTACTTGTAGTCCCAAAAAGAATGCTAGTTCTCCCATCATGCTCATTTCGAAT
326 CTTTGGTTTGCCTTACTTGTAGTCCCAAAAAGAATGCTAGTTCTCCCATCATGCTCATTTCGAAT
203469 TCACCTTGCATTAACTTAGAAAATTCTTGACACAAAGATTCATTAGTAGCACCAAAAATAATGTC
391 TCACCTTGCATTAACTTAGAAAATTCTTGACACAAAGATTCATTAGTAGCACCAAAAATAATGTC
203534 ATCTACATAAATTTGTACTATCAAAATATCTTTTCCTCTTGATTTAATAAAAAGTGTTTTATCCA
456 ATCTACATAAATTTGTACTATCAAAATATCTTTTCCTCTTGATTTAATAAAAAGTGTTTTATCCA
203599 CATTTCCTCTATTAAAACCTTTTTCGGTCAAAAACTTTGATAGCCTTTCATACCAAGCTCGAGGA
521 CATTTCCTCTATTAAAACCTTTTTCGGTCAAAAACTTTGATAGCCTTTCATACCAAGCTCGAGGA
203664 GCTTGTTTCAAACCATACAAAGCTTTTGAGAGTTTAAACACATGATTCGGAAATAATGGATTTTC
586 GCTTGTTTCAAACCATACAAAGCTTTTGAGAGTTTAAACACATGATTCGGAAATAATGGATTTTC
203729 AAAACCTGGAGGTTGTTCGACATAAACCTCCTCATTTATAAAACCATTTAAAAATGCACTTTAAA
651 AAAACCTGGAGGTTGTTCGACATAAACCTCCTCATTTATAAAACCATTTAAAAATGCACTTTAAA
203794 CATCCATTTGATATAATTTAAAACCATAGAAACATGCAAAAGCTAGTAAGATTCTAATAGCTTCT
716 CATCCATTTGATATAATTTAAAACCATAGAAACATGCAAAAGCTAGTAAGATTCTAATAGCTTCT
203859 AACCTAGCTACGGGTGCATAGGTTTCGTCATAGTCAATCCCTTCTTCTTGACTATAACCTTTTGC
781 AACCTAGCTACGGGTGCATAGGTTTCGTCATAGTCAATCCCTTCTTCTTGACTATAACCTTTTGC
203924 AACTAGCCTAGCTTTGTTTCTAACTATGATTCCATCTTCATCCAACTTATTTCTAAATACCC
846 AACTAGCCTAGCTTTGTTTCTAACTATGATTCCATCTTCATCCAACTTATTTCTAAATACCC
203986 CCTTAGGGTACCAAAGACCTAGATTTGGAGTATCTCGTAAATACCTAAAAATTCTTTTTACGGCA
1 CCTTAGGGTACCAAAGACCTAGATTTGGAGTATCTCGTAAATACCTAAAAATTCTTTTTACGGCA
204051 TGCAAATGAGACTCCCTAGGTGCAGATTGAAAACGGGCACACAAACATACACTAAACATAATATC
66 TGCAAATGAGACTCCCTAGGTGCAGATTGAAAACGGGCACACAAACATACACTAAACATAATATC
204116 CGGTCTACTAGCAGTAAGATATAATAATGAGCCAATCATAGACCTATAAAGTTTAGTGTCGATAA
131 CGGTCTACTAGCAGTAAGATATAATAATGAGCCAATCATAGACCTATAAAGTTTAGTGTCGATAA
204181 TGTTA-CCTCCTTCATCTTTTTCAAGCTTCGTTGAAGTACTCATCGGAGTTTCACATGGTTTGAC
196 TGTTACCCTCCTTCATCTTTTTCAAGCTTCGTTGAAGTACTCATCGGAGTTTCACATGGTTTGAC
204245 TTGGTCCATTTGAAATCTTTTGAGTAGTTCTTTTGTGTACTTGGCTTGATTGATGAAGATCCCGT
261 TTGGTCCATTTGAAATCTTTTGAGTAGTTCTTTTGTGTACTTGGCTTGATTGATGAAGATCCCGT
204310 CTTTGGTTTGCCTTACTTGTAGTCCCAAAAAGAATGCTAGTTCTCCCATCATGCTCATTTCGAAT
326 CTTTGGTTTGCCTTACTTGTAGTCCCAAAAAGAATGCTAGTTCTCCCATCATGCTCATTTCGAAT
204375 TCACCTTGCATTAACTTAGAAAATTCTTGACACAAAGATTCATTAGTAGCACCAAAAATAATGTC
391 TCACCTTGCATTAACTTAGAAAATTCTTGACACAAAGATTCATTAGTAGCACCAAAAATAATGTC
204440 ATCTACATAAATTTGTACTATCAAAATATCTTTTCCTCTTGATTTAATAAAAAGTGTTTTATCCA
456 ATCTACATAAATTTGTACTATCAAAATATCTTTTCCTCTTGATTTAATAAAAAGTGTTTTATCCA
204505 CATTTCCTCTATTAAAACCTTTTTCGGTCAAAAACTTTGATAGCCTTTCATACCAAGCTCGAGGA
521 CATTTCCTCTATTAAAACCTTTTTCGGTCAAAAACTTTGATAGCCTTTCATACCAAGCTCGAGGA
204570 GCTTGTTTCAAACCATACAAAGCTTTTGAGAGTTTAAACACATGATTCGGAAATAATGGATTTTC
586 GCTTGTTTCAAACCATACAAAGCTTTTGAGAGTTTAAACACATGATTCGGAAATAATGGATTTTC
204635 AAAACCTGGAGGTTGTTCGACATAAACCTCCTCATTTATAAAACCATTTAAAAATGCACTTTAAA
651 AAAACCTGGAGGTTGTTCGACATAAACCTCCTCATTTATAAAACCATTTAAAAATGCACTTTAAA
204700 CATCCATTTGATATAATTTAAAACCATAGAAACATGCAAAAGCTAGTAAGATTCTAATAGCTTCT
716 CATCCATTTGATATAATTTAAAACCATAGAAACATGCAAAAGCTAGTAAGATTCTAATAGCTTCT
*
204765 AACTTAGCTACGGGTGCATAGGTTTCGTCATAGTCAATCCCTTCTTCTTGACTATAACCTTTTGC
781 AACCTAGCTACGGGTGCATAGGTTTCGTCATAGTCAATCCCTTCTTCTTGACTATAACCTTTTGC
204830 AACTAGCCTAGCTTTGTTTCTAACTATGATTCCATCTTCATCCAACTTATTTCTAAATACCC
846 AACTAGCCTAGCTTTGTTTCTAACTATGATTCCATCTTCATCCAACTTATTTCTAAATACCC
*
204892 ACTTAG
1 CCTTAG
204898 TTCCTATAGT
Statistics
Matches: 910, Mismatches: 2, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
906 710 0.78
907 200 0.22
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.34
Consensus pattern (907 bp):
CCTTAGGGTACCAAAGACCTAGATTTGGAGTATCTCGTAAATACCTAAAAATTCTTTTTACGGCA
TGCAAATGAGACTCCCTAGGTGCAGATTGAAAACGGGCACACAAACATACACTAAACATAATATC
CGGTCTACTAGCAGTAAGATATAATAATGAGCCAATCATAGACCTATAAAGTTTAGTGTCGATAA
TGTTACCCTCCTTCATCTTTTTCAAGCTTCGTTGAAGTACTCATCGGAGTTTCACATGGTTTGAC
TTGGTCCATTTGAAATCTTTTGAGTAGTTCTTTTGTGTACTTGGCTTGATTGATGAAGATCCCGT
CTTTGGTTTGCCTTACTTGTAGTCCCAAAAAGAATGCTAGTTCTCCCATCATGCTCATTTCGAAT
TCACCTTGCATTAACTTAGAAAATTCTTGACACAAAGATTCATTAGTAGCACCAAAAATAATGTC
ATCTACATAAATTTGTACTATCAAAATATCTTTTCCTCTTGATTTAATAAAAAGTGTTTTATCCA
CATTTCCTCTATTAAAACCTTTTTCGGTCAAAAACTTTGATAGCCTTTCATACCAAGCTCGAGGA
GCTTGTTTCAAACCATACAAAGCTTTTGAGAGTTTAAACACATGATTCGGAAATAATGGATTTTC
AAAACCTGGAGGTTGTTCGACATAAACCTCCTCATTTATAAAACCATTTAAAAATGCACTTTAAA
CATCCATTTGATATAATTTAAAACCATAGAAACATGCAAAAGCTAGTAAGATTCTAATAGCTTCT
AACCTAGCTACGGGTGCATAGGTTTCGTCATAGTCAATCCCTTCTTCTTGACTATAACCTTTTGC
AACTAGCCTAGCTTTGTTTCTAACTATGATTCCATCTTCATCCAACTTATTTCTAAATACCC
Found at i:205214 original size:15 final size:15
Alignment explanation
Indices: 205194--205224 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
205184 ATTTCGTTTG
*
205194 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
205209 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
205224 G
1 G
205225 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:207057 original size:21 final size:21
Alignment explanation
Indices: 207028--207072 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
207018 AAGTTTTCAT
*
207028 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
207048 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
207070 TTT
1 TTT
207073 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:209308 original size:13 final size:13
Alignment explanation
Indices: 209290--209315 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
209280 CAATTTTTTG
209290 TGTATCGATACAT
1 TGTATCGATACAT
209303 TGTATCGATACAT
1 TGTATCGATACAT
209316 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:209399 original size:20 final size:20
Alignment explanation
Indices: 209354--209429 Score: 73
Period size: 20 Copynumber: 3.8 Consensus size: 20
209344 CTGCCAAGAA
***
209354 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGAATC
209375 ATGTATCGATACATTGCAA-C
1 ATGTATCGATACATTG-AATC
* *
209395 ATGTATCGATACTTTGAATT
1 ATGTATCGATACATTGAATC
*
209415 GTGTATCGATACATT
1 ATGTATCGATACATT
209430 TAAGGGTTTT
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
19 2 0.04
20 30 0.65
21 14 0.30
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.41
Consensus pattern (20 bp):
ATGTATCGATACATTGAATC
Found at i:211583 original size:29 final size:30
Alignment explanation
Indices: 211527--211584 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
211517 TAAACAAGAA
* * *
211527 CTTAAGTGAGACCAAAAGTTAAAGAAATGG
1 CTTAAGTGAAACCAAAAGATAAACAAATGG
*
211557 CTTAGGTGAAACCAAAA-ATAAACAAATG
1 CTTAAGTGAAACCAAAAGATAAACAAATG
211585 ACCTTGGGCA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 9 0.38
30 15 0.62
ACGTcount: A:0.50, C:0.12, G:0.19, T:0.19
Consensus pattern (30 bp):
CTTAAGTGAAACCAAAAGATAAACAAATGG
Found at i:212260 original size:59 final size:58
Alignment explanation
Indices: 212144--212262 Score: 141
Period size: 59 Copynumber: 2.0 Consensus size: 58
212134 AAATGGCTTT
* * * * * *
212144 GATGAAACTAGAACTTAAAGATAACTAGGATGAAATTAAGTTTCAAAGAAATGGCCTA
1 GATGAAACTAAAACCTAAAGAAAACTAGGATGAAATCAAGATTCAAAGAAATAGCCTA
* *
212202 GATGAAACTAAAAACCTAAAGAAAACTTGGAT-AGAATCAAGATTCAAGGAAATAGCCTA
1 GATGAAACT-AAAACCTAAAGAAAACTAGGATGA-AATCAAGATTCAAAGAAATAGCCTA
212261 GA
1 GA
212263 CAAAATTAGA
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
58 10 0.20
59 41 0.80
ACGTcount: A:0.49, C:0.12, G:0.18, T:0.21
Consensus pattern (58 bp):
GATGAAACTAAAACCTAAAGAAAACTAGGATGAAATCAAGATTCAAAGAAATAGCCTA
Found at i:212276 original size:59 final size:59
Alignment explanation
Indices: 212159--212277 Score: 132
Period size: 59 Copynumber: 2.0 Consensus size: 59
212149 AACTAGAACT
* * * * **
212159 TAAAGATAACTAGGATGAAATTAAGTTTCAAAGAAATGGCCTAGATGAAACTAAAAACC
1 TAAAGAAAACTAGGATGAAATCAAGATTCAAAGAAATAGCCTAGACAAAACTAAAAACC
* * * *
212218 TAAAGAAAACTTGGAT-AGAATCAAGATTCAAGGAAATAGCCTAGACAAAATTAGAAACC
1 TAAAGAAAACTAGGATGA-AATCAAGATTCAAAGAAATAGCCTAGACAAAACTAAAAACC
212277 T
1 T
212278 TAGATTACTT
Statistics
Matches: 49, Mismatches: 10, Indels: 2
0.80 0.16 0.03
Matches are distributed among these distances:
58 1 0.02
59 48 0.98
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.21
Consensus pattern (59 bp):
TAAAGAAAACTAGGATGAAATCAAGATTCAAAGAAATAGCCTAGACAAAACTAAAAACC
Found at i:213456 original size:13 final size:13
Alignment explanation
Indices: 213438--213463 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
213428 TTCTTCATGA
213438 ATCGATACAATGT
1 ATCGATACAATGT
213451 ATCGATACAATGT
1 ATCGATACAATGT
213464 GCCATGTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATCGATACAATGT
Found at i:213553 original size:19 final size:20
Alignment explanation
Indices: 213509--213561 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
213499 CTGCCAGTTT
* **
213509 CATGTATCGATATAATTGTG
1 CATGTATCGATACAATTGAA
213529 CATGTATCGATACAATT-AA
1 CATGTATCGATACAATTGAA
213548 CATGTATCGATACA
1 CATGTATCGATACA
213562 TTGTATTGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 14 0.47
20 16 0.53
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:213591 original size:33 final size:33
Alignment explanation
Indices: 213549--213629 Score: 144
Period size: 33 Copynumber: 2.5 Consensus size: 33
213539 TACAATTAAC
* *
213549 ATGTATCGATACATTGTATTGATACATAGCATA
1 ATGTATCGATACATTATATCGATACATAGCATA
213582 ATGTATCGATACATTATATCGATACATAGCATA
1 ATGTATCGATACATTATATCGATACATAGCATA
213615 ATGTATCGATACATT
1 ATGTATCGATACATT
213630 TGGAAATGTA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.36
Consensus pattern (33 bp):
ATGTATCGATACATTATATCGATACATAGCATA
Found at i:213592 original size:20 final size:20
Alignment explanation
Indices: 213563--213628 Score: 74
Period size: 20 Copynumber: 3.6 Consensus size: 20
213553 ATCGATACAT
*
213563 TGTATTGATACATAGCATAA
1 TGTATCGATACATAGCATAA
213583 TGTATCGATACAT----T-A
1 TGTATCGATACATAGCATAA
213598 --TATCGATACATAGCATAA
1 TGTATCGATACATAGCATAA
213616 TGTATCGATACAT
1 TGTATCGATACAT
213629 TTGGAAATGT
Statistics
Matches: 38, Mismatches: 1, Indels: 14
0.72 0.02 0.26
Matches are distributed among these distances:
13 11 0.29
15 1 0.03
16 1 0.03
17 1 0.03
18 1 0.03
20 23 0.61
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.35
Consensus pattern (20 bp):
TGTATCGATACATAGCATAA
Found at i:224300 original size:8 final size:8
Alignment explanation
Indices: 224287--224332 Score: 65
Period size: 8 Copynumber: 5.6 Consensus size: 8
224277 TTGTGCTGTA
224287 ATCATGAC
1 ATCATGAC
224295 ATCATGAC
1 ATCATGAC
224303 ATCATGAC
1 ATCATGAC
*
224311 ATCATAAC
1 ATCATGAC
*
224319 ATCAATAAC
1 ATC-ATGAC
224328 ATCAT
1 ATCAT
224333 TATTTGCATC
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
8 28 0.78
9 8 0.22
ACGTcount: A:0.43, C:0.24, G:0.07, T:0.26
Consensus pattern (8 bp):
ATCATGAC
Found at i:224475 original size:31 final size:30
Alignment explanation
Indices: 224436--224671 Score: 142
Period size: 31 Copynumber: 7.7 Consensus size: 30
224426 AATACCTTTT
224436 TAAAGTCCACGACTCAGTGGCAATCTCTTC
1 TAAAGTCCACGACTCAGTGGCAATCTCTTC
* *
224466 TCAAAGTCCATGACTCAGTGGC-AT-TTTGTC
1 T-AAAGTCCACGACTCAGTGGCAATCTCT-TC
* *
224496 TTAAAGTCCACGACTTAGTGGC-ATCCTTTTC
1 -TAAAGTCCACGACTCAGTGGCAAT-CTCTTC
* * * * * *
224527 TTCAAAGCCCACGAATCAGTGGCATTTTGTCC
1 -T-AAAGTCCACGACTCAGTGGCAATCTCTTC
* * *
224559 TAAAGTCCACGACTCCGTGGCACCTTTTCTTC
1 TAAAGTCCACGACTCAGTGGCA--ATCTCTTC
* * * * *
224591 TAAAAGCCCACGACTCAGTGGCATTTTGTCC
1 T-AAAGTCCACGACTCAGTGGCAATCTCTTC
* * *
224622 TAAAAGTCCACAATTCAGTGGC-ATCCCTT-
1 T-AAAGTCCACGACTCAGTGGCAATCTCTTC
*
224651 TTAAGTCCACGACT-AGTGGCA
1 TAAAGTCCACGACTCAGTGGCA
224672 TCAAAGTCCA
Statistics
Matches: 164, Mismatches: 31, Indels: 24
0.75 0.14 0.11
Matches are distributed among these distances:
27 6 0.04
28 10 0.06
29 3 0.02
30 45 0.27
31 50 0.30
32 30 0.18
33 20 0.12
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (30 bp):
TAAAGTCCACGACTCAGTGGCAATCTCTTC
Found at i:224504 original size:30 final size:30
Alignment explanation
Indices: 224435--224645 Score: 201
Period size: 31 Copynumber: 6.8 Consensus size: 30
224425 AAATACCTTT
*
224435 TTAAAGTCCACGACTCAGTGGCAATCTCT-TC
1 TTAAAGTCCACGACTCAGTGGC-AT-TTTGTC
* *
224466 TCAAAGTCCATGACTCAGTGGCATTTTGTC
1 TTAAAGTCCACGACTCAGTGGCATTTTGTC
*
224496 TTAAAGTCCACGACTTAGTGGCATCCTTT-TC
1 TTAAAGTCCACGACTCAGTGGCAT--TTTGTC
* *
224527 TTCAAAGCCCACGAATCAGTGGCATTTTGTC
1 TT-AAAGTCCACGACTCAGTGGCATTTTGTC
* * *
224558 CTAAAGTCCACGACTCCGTGGCACCTTTTCTTC
1 TTAAAGTCCACGACTCAGTGGCA--TTTT-GTC
* *
224591 TAAAAGCCCACGACTCAGTGGCATTTTGTCC
1 TTAAAGTCCACGACTCAGTGGCATTTTGT-C
* * *
224622 TAAAAGTCCACAATTCAGTGGCAT
1 TTAAAGTCCACGACTCAGTGGCAT
224646 CCCTTTTAAG
Statistics
Matches: 149, Mismatches: 22, Indels: 18
0.79 0.12 0.10
Matches are distributed among these distances:
29 2 0.01
30 47 0.32
31 53 0.36
32 26 0.17
33 21 0.14
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (30 bp):
TTAAAGTCCACGACTCAGTGGCATTTTGTC
Found at i:224557 original size:62 final size:62
Alignment explanation
Indices: 224435--224652 Score: 280
Period size: 62 Copynumber: 3.5 Consensus size: 62
224425 AAATACCTTT
* * *
224435 TTAAAGTCCACGACTCAGTGGCAAT-CTCTTC-TCAAAGTCCATGACTCAGTGGCATTTTGTC
1 TTAAAGTCCACGACTCAGTGGC-ATCCTTTTCTTCAAAGCCCACGACTCAGTGGCATTTTGTC
* *
224496 TTAAAGTCCACGACTTAGTGGCATCCTTTTCTTCAAAGCCCACGAATCAGTGGCATTTTGTC
1 TTAAAGTCCACGACTCAGTGGCATCCTTTTCTTCAAAGCCCACGACTCAGTGGCATTTTGTC
* *
224558 CTAAAGTCCACGACTCCGTGGCA-CCTTTTCTTCTAAAAGCCCACGACTCAGTGGCATTTTGTCC
1 TTAAAGTCCACGACTCAGTGGCATCCTTTTCTTC--AAAGCCCACGACTCAGTGGCATTTTGT-C
* * *
224622 TAAAAGTCCACAATTCAGTGGCATCCCTTTT
1 TTAAAGTCCACGACTCAGTGGCAT-CCTTTT
224653 AAGTCCACGA
Statistics
Matches: 136, Mismatches: 14, Indels: 9
0.86 0.09 0.06
Matches are distributed among these distances:
60 2 0.01
61 36 0.26
62 47 0.35
63 26 0.19
64 19 0.14
66 6 0.04
ACGTcount: A:0.24, C:0.28, G:0.17, T:0.31
Consensus pattern (62 bp):
TTAAAGTCCACGACTCAGTGGCATCCTTTTCTTCAAAGCCCACGACTCAGTGGCATTTTGTC
Found at i:224602 original size:33 final size:32
Alignment explanation
Indices: 224513--224613 Score: 84
Period size: 33 Copynumber: 3.2 Consensus size: 32
224503 CCACGACTTA
*
224513 GTGGCATCCTTTTCTTC-AAAGCCCACGAA-TCA
1 GTGGCA-CCTTTTCTTCTAAAGCCCAC-AACTCC
* * * *
224545 GTGGCA--TTTTGTCCTAAAGTCCACGACTCC
1 GTGGCACCTTTTCTTCTAAAGCCCACAACTCC
* *
224575 GTGGCACCTTTTCTTCTAAAAGCCCACGACTCA
1 GTGGCACCTTTTCTTCT-AAAGCCCACAACTCC
224608 GTGGCA
1 GTGGCA
224614 TTTTGTCCTA
Statistics
Matches: 55, Mismatches: 9, Indels: 9
0.75 0.12 0.12
Matches are distributed among these distances:
29 7 0.13
30 16 0.29
32 13 0.24
33 19 0.35
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.28
Consensus pattern (32 bp):
GTGGCACCTTTTCTTCTAAAGCCCACAACTCC
Found at i:224846 original size:34 final size:33
Alignment explanation
Indices: 224679--225059 Score: 367
Period size: 34 Copynumber: 11.6 Consensus size: 33
224669 GCATCAAAGT
* * * *
224679 CCACGACTCCGTGGCACCGTTTT-CTTTCAAAGT
1 CCACAACTCCGTGGCACCTTTTTCCTTT-TAAGC
*
224712 CTACAACTCCGTGGCACC----TCCTTTTCAAAGC
1 CCACAACTCCGTGGCACCTTTTTCCTTTT--AAGC
*
224743 CCACAACTACGTGGCA-CTCTTTTCCTTTTAAGC
1 CCACAACTCCGTGGCACCT-TTTTCCTTTTAAGC
* *
224776 CCATAACTCCGTGGCA-C-----CCGTTTAAGC
1 CCACAACTCCGTGGCACCTTTTTCCTTTTAAGC
* *
224803 CCACGACTCCGTGGCACTCTTTTTCCTTCTAAGC
1 CCACAACTCCGTGGCAC-CTTTTTCCTTTTAAGC
* **
224837 CCACAACTCCGTGGCACCTTCTT--TTCAAAGC
1 CCACAACTCCGTGGCACCTTTTTCCTTTTAAGC
*
224868 CCACAACTCCGTGGCACCTTTTTCTTTTTAAAGC
1 CCACAACTCCGTGGCACCTTTTTCCTTTT-AAGC
* *
224902 CCACAACTCCGTGGCACCTTGTTCCTTTTAAGT
1 CCACAACTCCGTGGCACCTTTTTCCTTTTAAGC
*
224935 CCACAACTCCGTGGCACTCTTTTTCTTTTTAAAGC
1 CCACAACTCCGTGGCAC-CTTTTTCCTTTT-AAGC
* *
224970 CCACAATTCCGTGGCACCTTTTTCTTTTTAAAGC
1 CCACAACTCCGTGGCACCTTTTTCCTTTT-AAGC
* *
225004 CCACAACTCCGTGGCACTCTTTTTCCCTTTTATGT
1 CCACAACTCCGTGGCAC-CTTTTT-CCTTTTAAGC
*
225039 CCACAACTCCGTGGCATCTTT
1 CCACAACTCCGTGGCACCTTT
225060 CTCCCTTCCT
Statistics
Matches: 295, Mismatches: 31, Indels: 43
0.80 0.08 0.12
Matches are distributed among these distances:
27 23 0.08
29 2 0.01
30 5 0.02
31 46 0.16
33 62 0.21
34 102 0.35
35 50 0.17
36 5 0.02
ACGTcount: A:0.19, C:0.35, G:0.14, T:0.32
Consensus pattern (33 bp):
CCACAACTCCGTGGCACCTTTTTCCTTTTAAGC
Found at i:225107 original size:33 final size:32
Alignment explanation
Indices: 225063--225231 Score: 250
Period size: 33 Copynumber: 5.2 Consensus size: 32
225053 CATCTTTCTC
225063 CCTTC-CTAAAGCCCACACAAGTCGGTGGCAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAA
*
225094 CCTTCTTTCAAAGCCCACACAAGTCGGTGGCAA
1 CCTTCTCT-AAAGCCCACACAAGTCGGTGGCAA
*
225127 CCTTCTTCTAAAGCCCACACAAGTCAGTGGCAA
1 CCTTC-TCTAAAGCCCACACAAGTCGGTGGCAA
* *
225160 CCCTCTCTAAAGCCCACACAAGTTGGTGGCAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAA
*
225192 CTATTCTCTAAAGCCCACACAAGTCGGTGGCAA
1 C-CTTCTCTAAAGCCCACACAAGTCGGTGGCAA
225225 CCCTTCT
1 -CCTTCT
225232 AAGTCCAATA
Statistics
Matches: 123, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
31 5 0.04
32 27 0.22
33 88 0.72
34 3 0.02
ACGTcount: A:0.28, C:0.34, G:0.17, T:0.21
Consensus pattern (32 bp):
CCTTCTCTAAAGCCCACACAAGTCGGTGGCAA
Found at i:225202 original size:65 final size:65
Alignment explanation
Indices: 225068--225233 Score: 255
Period size: 65 Copynumber: 2.6 Consensus size: 65
225058 TTCTCCCTTC
* * *
225068 CTAAAGCCCACACAAGTCGGTGGCAACCTTCTTTCAAAGCCCACACAAGTCGGTGGCAACCTTCT
1 CTAAAGCCCACACAAGTCGGTGGCAACCCTCTCT-AAAGCCCACACAAGTCGGTGGCAACATTCT
225133 T
65 T
* *
225134 CTAAAGCCCACACAAGTCAGTGGCAACCCTCTCTAAAGCCCACACAAGTTGGTGGCAACTATTC-
1 CTAAAGCCCACACAAGTCGGTGGCAACCCTCTCTAAAGCCCACACAAGTCGGTGGCAAC-ATTCT
225198 T
65 T
225199 CTAAAGCCCACACAAGTCGGTGGCAACCCT-TCTAA
1 CTAAAGCCCACACAAGTCGGTGGCAACCCTCTCTAA
225234 GTCCAATATT
Statistics
Matches: 93, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
64 5 0.05
65 54 0.58
66 34 0.37
ACGTcount: A:0.30, C:0.33, G:0.17, T:0.20
Consensus pattern (65 bp):
CTAAAGCCCACACAAGTCGGTGGCAACCCTCTCTAAAGCCCACACAAGTCGGTGGCAACATTCTT
Found at i:225288 original size:49 final size:49
Alignment explanation
Indices: 225226--225972 Score: 747
Period size: 49 Copynumber: 15.8 Consensus size: 49
225216 CGGTGGCAAC
* *
225226 CCTTCTAAGTCCAATATTGCTGGCCTTGAATCAACATATTGGCACCTTCA
1 CCTT-TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCA
* * *
225276 CCTTTAAGTCCAATATAACTGGCCTTGAATCAGCACACTGGCACCTT-A
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCA
* * * * *
225324 TTCTTTAAGTCCAATGTAGCTAGCCTTGAATCAACACATTGG------CA
1 -CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCA
*
225368 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCT
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCA
* * *
225417 TCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG------CA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCA
*
225460 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCT
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCA
* * *
225509 TCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG------CA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCA
*
225552 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCT
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCA
* * * *
225601 TCTTTAAGTCCAATGTAGGTGGCCTTGAATCAGCACATTGG------CA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCA
225644 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CA
* ** * * *
225696 TCTTTAAGTCCAACGTAGTTGGCCATGAATCAGCACATTGG------CA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCA
* *
225739 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCA
* * * *
225788 TCTTTAAGTCCAATATCGCTGGTCTTGAATCAGCATATTGGCACCTTCT
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCA
* * *
225837 TCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-T--
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCA
* **
225883 --TTAAAACCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CA
* * * * * *
225933 TCTTTAAGTTCAATGTAGCTGGCCTTAAATTAGCACATTG
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTG
225973 ACATCCTTTT
Statistics
Matches: 577, Mismatches: 77, Indels: 84
0.78 0.10 0.11
Matches are distributed among these distances:
43 188 0.33
44 39 0.07
47 1 0.00
48 2 0.00
49 276 0.48
50 4 0.01
52 67 0.12
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (49 bp):
CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCA
Found at i:225401 original size:92 final size:92
Alignment explanation
Indices: 225274--225928 Score: 971
Period size: 92 Copynumber: 7.1 Consensus size: 92
225264 TTGGCACCTT
* * * *
225274 CACCTTTAAGTCCAATATAACTGGCCTTGAATCAGCACACTGGCACCTTATTCTTTAAGTCCAAT
1 CACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAAT
* *
225339 GTAGCTAGCCTTGAATCAACACATTGG
66 GTAGCTGGCCTTGAATCAGCACATTGG
225366 CACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAAT
1 CACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAAT
225431 GTAGCTGGCCTTGAATCAGCACATTGG
66 GTAGCTGGCCTTGAATCAGCACATTGG
225458 CACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAAT
1 CACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAAT
225523 GTAGCTGGCCTTGAATCAGCACATTGG
66 GTAGCTGGCCTTGAATCAGCACATTGG
225550 CACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAAT
1 CACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAAT
*
225615 GTAGGTGGCCTTGAATCAGCACATTGG
66 GTAGCTGGCCTTGAATCAGCACATTGG
*
225642 CACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCC
1 CACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CTTCTTTAAGTCC
* * *
225707 AACGTAGTTGGCCATGAATCAGCACATTGG
63 AATGTAGCTGGCCTTGAATCAGCACATTGG
*
225737 CACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-TATCTTTAAGTCCAA
1 CACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCT-TCTTTAAGTCCAA
* * * *
225801 TATCGCTGGTCTTGAATCAGCATATTGG
65 TGTAGCTGGCCTTGAATCAGCACATTGG
* * * *
225829 CACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--C-T-TTAAAA
1 CA----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAG
* * *
225889 CCCAATATAGCTGGCCTTGAATCAGCATATTGG
60 TCCAATGTAGCTGGCCTTGAATCAGCACATTGG
225922 CACCTTT
1 CACCTTT
225929 TCCATCTTTA
Statistics
Matches: 524, Mismatches: 28, Indels: 27
0.91 0.05 0.05
Matches are distributed among these distances:
87 4 0.01
89 1 0.00
92 352 0.67
93 38 0.07
94 3 0.01
95 85 0.16
96 1 0.00
97 1 0.00
98 39 0.07
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (92 bp):
CACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAAT
GTAGCTGGCCTTGAATCAGCACATTGG
Found at i:225725 original size:52 final size:50
Alignment explanation
Indices: 225645--226035 Score: 371
Period size: 49 Copynumber: 7.9 Consensus size: 50
225635 ACATTGGCAC
225645 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC-TTT-CAT
** * * *
225697 CTTTAAGTCCAACGTAGTTGGCCATGAATCAGCACATTGGCA-----C--
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTCAT
*
225740 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTT-AT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTCAT
* * *
225789 CTTTAAGTCCAATATCGCTGGTCTTGAATCAGCATATTGGCACC-TTCTT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTCAT
* *
225838 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTT-A-
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTCAT
**
225886 ----AAACCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC-TTT-CAT
* * * * * *
225934 CTTTAAGTTCAATGTAGCTGGCCTTAAATTAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC---TT-TCAT
* * * * * *
225989 CTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTT
226036 ATCACTTTTC
Statistics
Matches: 276, Mismatches: 42, Indels: 44
0.76 0.12 0.12
Matches are distributed among these distances:
43 36 0.13
44 36 0.13
45 4 0.01
47 1 0.00
48 2 0.01
49 84 0.30
50 3 0.01
51 2 0.01
52 67 0.24
53 2 0.01
54 1 0.00
55 37 0.13
56 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.16, T:0.34
Consensus pattern (50 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTCAT
Found at i:226011 original size:55 final size:52
Alignment explanation
Indices: 225889--226003 Score: 140
Period size: 52 Copynumber: 2.2 Consensus size: 52
225879 ACCTTTAAAA
* * *
225889 CCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAG
1 CCCAATATAGCTGGCCTTAAATCAGCACATTGACACCTTTTCCATCTTTAAG
** * *
225941 TTCAATGTAGCTGGCCTTAAATTAGCACATTGACATCCTTTTTCTCATCTTTAAG
1 CCCAATATAGCTGGCCTTAAATCAGCACATTGACA-CC-TTTTC-CATCTTTAAG
225996 CCCAATAT
1 CCCAATAT
226004 CGTTGGCCGT
Statistics
Matches: 50, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
52 28 0.56
53 2 0.04
54 5 0.10
55 15 0.30
ACGTcount: A:0.26, C:0.25, G:0.13, T:0.36
Consensus pattern (52 bp):
CCCAATATAGCTGGCCTTAAATCAGCACATTGACACCTTTTCCATCTTTAAG
Found at i:226133 original size:52 final size:52
Alignment explanation
Indices: 226052--226205 Score: 254
Period size: 52 Copynumber: 3.0 Consensus size: 52
226042 TTTCTCATCT
*
226052 TCATCTTTAAGTCCAATATCGCTGTCCTTGAATCAGCATATTGGCGCCTTTG
1 TCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTG
* * *
226104 TCATCTTTATGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCGTCTTTG
1 TCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTG
* *
226156 TCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTT
1 TCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTT
226206 CATCTTTAAC
Statistics
Matches: 93, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 93 1.00
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (52 bp):
TCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTG
Found at i:227046 original size:13 final size:13
Alignment explanation
Indices: 227028--227052 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
227018 CATAAAGTGT
227028 TGTATCGATACAA
1 TGTATCGATACAA
227041 TGTATCGATACA
1 TGTATCGATACA
227053 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:227050 original size:33 final size:33
Alignment explanation
Indices: 227008--227074 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
226998 TTCAACGATT
227008 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
*** *
227041 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
227074 T
1 T
227075 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Found at i:227134 original size:13 final size:13
Alignment explanation
Indices: 227116--227140 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
227106 ATTACTCAAA
227116 TGTATCGATACAT
1 TGTATCGATACAT
227129 TGTATCGATACA
1 TGTATCGATACA
227141 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:232868 original size:19 final size:19
Alignment explanation
Indices: 232817--232870 Score: 65
Period size: 22 Copynumber: 2.7 Consensus size: 19
232807 CATCTTTGGT
232817 GCTTAAGAATAAAACCCAA
1 GCTTAAGAATAAAACCCAA
232836 G-TATATCTAGAATAAAACCCAA
1 GCT-TA---AGAATAAAACCCAA
232858 GCTTAAGAATAAA
1 GCTTAAGAATAAA
232871 GCTTCATCTT
Statistics
Matches: 30, Mismatches: 0, Indels: 10
0.75 0.00 0.25
Matches are distributed among these distances:
18 1 0.03
19 11 0.37
22 17 0.57
23 1 0.03
ACGTcount: A:0.52, C:0.17, G:0.11, T:0.20
Consensus pattern (19 bp):
GCTTAAGAATAAAACCCAA
Found at i:234852 original size:19 final size:20
Alignment explanation
Indices: 234815--234852 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
234805 TCCCGTTGCT
234815 ATGTATCGATACAATTCATA
1 ATGTATCGATACAATTCATA
234835 ATGTATCGATAC-ATTCAT
1 ATGTATCGATACAATTCAT
234853 TTGAAATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.37
Consensus pattern (20 bp):
ATGTATCGATACAATTCATA
Found at i:234933 original size:19 final size:20
Alignment explanation
Indices: 234896--234933 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
234886 AATGTATGCT
234896 ATGTATCGATACAATTCATA
1 ATGTATCGATACAATTCATA
234916 ATGTATCGATAC-ATTCAT
1 ATGTATCGATACAATTCAT
234934 TTGAAATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.37
Consensus pattern (20 bp):
ATGTATCGATACAATTCATA
Found at i:234946 original size:81 final size:81
Alignment explanation
Indices: 234811--234973 Score: 317
Period size: 81 Copynumber: 2.0 Consensus size: 81
234801 GCATTCCCGT
234811 TGCTATGTATCGATACAATTCATAATGTATCGATACATTCATTTGAAATTATAGCCGTTTATAGC
1 TGCTATGTATCGATACAATTCATAATGTATCGATACATTCATTTGAAATTATAGCCGTTTATAGC
*
234876 TGTTTGGGATAATGTA
66 CGTTTGGGATAATGTA
234892 TGCTATGTATCGATACAATTCATAATGTATCGATACATTCATTTGAAATTATAGCCGTTTATAGC
1 TGCTATGTATCGATACAATTCATAATGTATCGATACATTCATTTGAAATTATAGCCGTTTATAGC
234957 CGTTTGGGATAATGTA
66 CGTTTGGGATAATGTA
234973 T
1 T
234974 CGATACAATT
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 81 1.00
ACGTcount: A:0.31, C:0.13, G:0.17, T:0.39
Consensus pattern (81 bp):
TGCTATGTATCGATACAATTCATAATGTATCGATACATTCATTTGAAATTATAGCCGTTTATAGC
CGTTTGGGATAATGTA
Found at i:235088 original size:20 final size:19
Alignment explanation
Indices: 235042--235095 Score: 74
Period size: 19 Copynumber: 2.8 Consensus size: 19
235032 ACTGCCAGTT
*
235042 TAATGTATCGATACAATGA
1 TAATGTATCGATACAAAGA
235061 -ACATGTATCGATACAAAGCA
1 TA-ATGTATCGATACAAAG-A
235081 TAATGTATCGATACA
1 TAATGTATCGATACA
235096 CTTGGATATG
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
18 1 0.03
19 15 0.48
20 14 0.45
21 1 0.03
ACGTcount: A:0.43, C:0.15, G:0.15, T:0.28
Consensus pattern (19 bp):
TAATGTATCGATACAAAGA
Found at i:235106 original size:20 final size:19
Alignment explanation
Indices: 235044--235115 Score: 81
Period size: 20 Copynumber: 3.7 Consensus size: 19
235034 TGCCAGTTTA
*
235044 ATGTATCGATACAATGAAC
1 ATGTATCGATACAATGAAT
* *
235063 ATGTATCGATACAAAGCAT
1 ATGTATCGATACAATGAAT
* *
235082 AATGTATCGATACACTTGGAT
1 -ATGTATCGATACA-ATGAAT
235103 ATGTATCGATACA
1 ATGTATCGATACA
235116 TACAAGGGTT
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
19 16 0.36
20 26 0.58
21 3 0.07
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.29
Consensus pattern (19 bp):
ATGTATCGATACAATGAAT
Found at i:238259 original size:33 final size:32
Alignment explanation
Indices: 238217--238281 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 32
238207 CATATCTAGA
* *
238217 TGTATCGATACATTATCCTTTGTATTGATACAT
1 TGTATCGATACATGATCC-TTGTATCGATACAT
*
238250 TGTATCGATACATGCTCCTTGTATCGATACAT
1 TGTATCGATACATGATCCTTGTATCGATACAT
238282 ACTCAATTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 13 0.45
33 16 0.55
ACGTcount: A:0.26, C:0.18, G:0.14, T:0.42
Consensus pattern (32 bp):
TGTATCGATACATGATCCTTGTATCGATACAT
Found at i:240704 original size:15 final size:15
Alignment explanation
Indices: 240686--240718 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
240676 TTGCTATTAT
*
240686 CATGGATCATATTTC
1 CATGGATCATATTGC
240701 CATGGATCATATTGC
1 CATGGATCATATTGC
240716 CAT
1 CAT
240719 TTGTCTCACC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.36
Consensus pattern (15 bp):
CATGGATCATATTGC
Found at i:241435 original size:12 final size:13
Alignment explanation
Indices: 241417--241450 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
241407 TCAAATCCTA
241417 ACAAATTCTTTTT
1 ACAAATTCTTTTT
241430 -CAAATT-TTTTT
1 ACAAATTCTTTTT
241441 ACAAATTCTT
1 ACAAATTCTT
241451 CAATTATTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 5 0.26
12 12 0.63
13 2 0.11
ACGTcount: A:0.32, C:0.15, G:0.00, T:0.53
Consensus pattern (13 bp):
ACAAATTCTTTTT
Found at i:241459 original size:11 final size:11
Alignment explanation
Indices: 241445--241477 Score: 50
Period size: 10 Copynumber: 3.1 Consensus size: 11
241435 TTTTTTACAA
*
241445 ATTCTTCAATT
1 ATTCTTCAAAT
241456 ATTCTTCAAAT
1 ATTCTTCAAAT
241467 -TTCTTCAAAT
1 ATTCTTCAAAT
241477 A
1 A
241478 CTCATAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
10 10 0.50
11 10 0.50
ACGTcount: A:0.33, C:0.18, G:0.00, T:0.48
Consensus pattern (11 bp):
ATTCTTCAAAT
Found at i:243983 original size:19 final size:19
Alignment explanation
Indices: 243959--244014 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
243949 TGTATCAATA
*
243959 CATTGTATCGATACATGTT
1 CATTGTATCGATACATGCT
*
243978 CATTGTATCGATACATACT
1 CATTGTATCGATACATGCT
*
243997 CAATTGTATCGGTACATG
1 C-ATTGTATCGATACATG
244015 AAACTGGTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 18 0.56
20 14 0.44
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.38
Consensus pattern (19 bp):
CATTGTATCGATACATGCT
Found at i:244087 original size:20 final size:20
Alignment explanation
Indices: 244041--244095 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
244031 CCCTAAGTAG
*
244041 AAAGTATCGATATATGGGAC
1 AAAGTATCGATACATGGGAC
**
244061 ATTGTATCGATACATGGTGA-
1 AAAGTATCGATACATGG-GAC
244081 AAAGTATCGATACAT
1 AAAGTATCGATACAT
244096 TGTGCCTAAC
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
20 27 0.93
21 2 0.07
ACGTcount: A:0.38, C:0.11, G:0.22, T:0.29
Consensus pattern (20 bp):
AAAGTATCGATACATGGGAC
Found at i:246322 original size:13 final size:13
Alignment explanation
Indices: 246304--246329 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
246294 CAATTTTTTG
246304 TGTATCGATACAT
1 TGTATCGATACAT
246317 TGTATCGATACAT
1 TGTATCGATACAT
246330 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:246344 original size:32 final size:33
Alignment explanation
Indices: 246284--246347 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
246274 TACAAGCCAA
** *
246284 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
246317 TGTATCGATAC-ATACTTGGTGTATCGATACA
1 TGTATCGATACAATACTTGGTGTATCGATACA
246348 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATACAT
Found at i:247035 original size:16 final size:16
Alignment explanation
Indices: 247011--247047 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
247001 ATTGTAGCAA
*
247011 TTTACGCATTCTCCCC
1 TTTATGCATTCTCCCC
247027 TTTATGCATTCTCCCC
1 TTTATGCATTCTCCCC
247043 TTTAT
1 TTTAT
247048 CTCCCCCGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.14, C:0.35, G:0.05, T:0.46
Consensus pattern (16 bp):
TTTATGCATTCTCCCC
Found at i:247088 original size:21 final size:21
Alignment explanation
Indices: 247047--247090 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
247037 CTCCCCTTTA
* *
247047 TCTCCCCCGTTTATTAATAAT
1 TCTCCCCCGTTAATCAATAAT
247068 TCTCCCCC-TTAATCAAGTAAT
1 TCTCCCCCGTTAATCAA-TAAT
247089 TC
1 TC
247091 ATATCAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.25, C:0.32, G:0.05, T:0.39
Consensus pattern (21 bp):
TCTCCCCCGTTAATCAATAAT
Found at i:248914 original size:13 final size:13
Alignment explanation
Indices: 248896--248921 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
248886 ATAATCACCC
248896 TGTATCGATACAA
1 TGTATCGATACAA
248909 TGTATCGATACAA
1 TGTATCGATACAA
248922 AGAAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:251759 original size:13 final size:13
Alignment explanation
Indices: 251741--251766 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
251731 TACAGCAAGT
251741 ATGTATCGATACA
1 ATGTATCGATACA
251754 ATGTATCGATACA
1 ATGTATCGATACA
251767 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:256277 original size:13 final size:13
Alignment explanation
Indices: 256259--256284 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
256249 CAATTTTTTG
256259 TGTATCGATACAT
1 TGTATCGATACAT
256272 TGTATCGATACAT
1 TGTATCGATACAT
256285 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:256299 original size:32 final size:33
Alignment explanation
Indices: 256239--256302 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
256229 TACAAGCCAA
** *
256239 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
256272 TGTATCGATAC-ATACTTGGTGTATCGATACA
1 TGTATCGATACAATACTTGGTGTATCGATACA
256303 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATACAT
Found at i:256973 original size:20 final size:20
Alignment explanation
Indices: 256944--257019 Score: 89
Period size: 20 Copynumber: 3.8 Consensus size: 20
256934 TTTTTAACCA
256944 AATGTATCGATACATTTTTC
1 AATGTATCGATACATTTTTC
* * * *
256964 AATATATCGATACATGTATG
1 AATGTATCGATACATTTTTC
* * *
256984 AATGTATCGATATATTCTGC
1 AATGTATCGATACATTTTTC
257004 AATGTATCGATACATT
1 AATGTATCGATACATT
257020 ATGTCTTTTT
Statistics
Matches: 44, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.13, G:0.13, T:0.39
Consensus pattern (20 bp):
AATGTATCGATACATTTTTC
Found at i:257012 original size:40 final size:39
Alignment explanation
Indices: 256944--257022 Score: 113
Period size: 40 Copynumber: 2.0 Consensus size: 39
256934 TTTTTAACCA
* *
256944 AATGTATCGATACATTTTTCAATATATCGATACATGTATG
1 AATGTATCGATACATTCTGCAATATATCGATACAT-TATG
* *
256984 AATGTATCGATATATTCTGCAATGTATCGATACATTATG
1 AATGTATCGATACATTCTGCAATATATCGATACATTATG
257023 TCTTTTTACC
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
39 4 0.11
40 31 0.89
ACGTcount: A:0.34, C:0.13, G:0.14, T:0.39
Consensus pattern (39 bp):
AATGTATCGATACATTCTGCAATATATCGATACATTATG
Found at i:261290 original size:20 final size:20
Alignment explanation
Indices: 261251--261292 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
261241 GAAGGGCCAT
*
261251 TTTTTTTTTATTGATGTTCA
1 TTTTTTTTTATTGATATTCA
* *
261271 TTTTTTTTTCTTGCTATTCA
1 TTTTTTTTTATTGATATTCA
261291 TT
1 TT
261293 CCCATTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.12, C:0.10, G:0.07, T:0.71
Consensus pattern (20 bp):
TTTTTTTTTATTGATATTCA
Found at i:270998 original size:13 final size:13
Alignment explanation
Indices: 270980--271011 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
270970 CTTTACACCC
270980 AAAAAAAAAACAA
1 AAAAAAAAAACAA
270993 AAAAAAAAAACAA
1 AAAAAAAAAACAA
271006 AAAAAA
1 AAAAAA
271012 CAAGAAGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.94, C:0.06, G:0.00, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAACAA
Found at i:271010 original size:22 final size:22
Alignment explanation
Indices: 270982--271038 Score: 69
Period size: 22 Copynumber: 2.6 Consensus size: 22
270972 TTACACCCAA
270982 AAAAAAAACAAAAAAAAAAAAC
1 AAAAAAAACAAAAAAAAAAAAC
* * * *
271004 AAAAAAAACAAGAAGAAATAGC
1 AAAAAAAACAAAAAAAAAAAAC
*
271026 AAAAAAAAGAAAA
1 AAAAAAAACAAAA
271039 GGGTCTAGAT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.84, C:0.07, G:0.07, T:0.02
Consensus pattern (22 bp):
AAAAAAAACAAAAAAAAAAAAC
Found at i:272342 original size:58 final size:57
Alignment explanation
Indices: 272252--273776 Score: 1537
Period size: 56 Copynumber: 26.4 Consensus size: 57
272242 GTTCATTCCC
* *
272252 TTCAAAGCCCACGAGTCAGTGGCACTCTTTTCAAAGCCCACGAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCT
*
272309 ATTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTTAGTGGCACCCT
1 -TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCT
* * * **
272367 TTCAAAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGCGCACAAGTCAATGGCACTTT
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCT
* *
272423 TTCAAAGCCCACAAGTCAGTGGCACTC-TCTCAAAGCCCACAAGTCAGTGGCACCTT
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCT
272479 TTC-AAGCCCACAAGTCAGTGGCACTC-TTTCAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCT
* *
272534 TTCAAAGCCCACAAGTCAGTGGCACGC-TTTCATAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCT
* * * * * * *
272590 TTCGAAGCCCACAAGTTAGTGGCAC-CCTTTCGAAGCCCACAATTTAGTGGCACTCT
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCT
* * *
272646 TTCAAAGCCCACAAGTAAGTGGCA-TCCTTTCAAAGCCCACACAATTCAGTGGCACTCCT
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAG-CC-CACAAGTCAGTGGCAC-CCT
* * * * * *
272705 TTCAAAGCCCACACAAGTCGGTAGCAACTCCTTTT-AAAGCCCATAAATCAGTTGCACTCTT
1 TTCAAAG-CC-CACAAGTCAGTGGC-ACT-CTTTTCAAAGCCCACAAGTCAGTGGCAC-CCT
* * *
272766 TTCAAAGCCCACGAGTCAGTGGCAC-CCTTTC-AAGCCCACGAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCT
** * * * * *
272821 TTC-AAGCCCACGGGTTAGTCGTAC-C-TTTCAAAGCCCACGAGTCAGTGGCACTCT
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCT
272875 TTCAAAGCCCACAAGTCAGTGGCAAGTCAGTGGCACCCTTTT-AAAGCCCACGCAAGTCAGTGGC
1 TTCAAAGCCCACAAGTCAGTGGC-A--C--T------CTTTTCAAAGCCCA--CAAGTCAGTGGC
*
272939 ACCTT
53 ACCCT
* * *
272944 TTCAAAGCCCACGAGTCAGTGGCAC-CTTTTTCAAAGCCCATAAGTCAGTGGCACTCT
1 TTCAAAGCCCACAAGTCAGTGGCACTC-TTTTCAAAGCCCACAAGTCAGTGGCACCCT
* * * *
273001 TTCAAAGCCCACAAGTCGGTGGCA-TCCTTTCAAAGCCCACGCAAGTTAGTGGCACCTT
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCA--CAAGTCAGTGGCACCCT
* * * *
273059 TTCAAAACCCACGAGTCAGTGGCACTC-TTTCAAAGCCCACAAGTTAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCT
* *
273115 TTCAAAGCCCACGCAAGTCAGTGGCACCCTTTT-AAAGCCCACACAAGTCAGTGGCACCTT
1 TTCAAAGCCCA--CAAGTCAGTGGCACTCTTTTCAAAG-CC-CACAAGTCAGTGGCACCCT
* * * * *
273175 TTCAAAGCCCACGAGTCAATGGCACTC-TTTGAGAGCCCACAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCT
* * * **
273231 TTCAAAGCCCACACAAGTCAATAGCACTCTTTTCAAAGCCCACGCAAGTTAGTGGCACATT
1 TTCAAAG-CC-CACAAGTCAGTGGCACTCTTTTCAAAGCCCA--CAAGTCAGTGGCACCCT
* * * *
273292 TTC-CAGCCCACGAGTCAGTGGCACTC-TTTCAAAGCCCACAAGTTAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCT
* * **
273347 TTCAAAGCCCACGCAAGTTAGTGGCAAC-CTTTT-AAAGCCCACGCAAGTCAGTAGCACTATT
1 TTCAAAGCCCA--CAAGTCAGTGGC-ACTCTTTTCAAAGCCCA--CAAGTCAGTGGCAC-CCT
* **
273408 TTCAAAGCCCACGCAAGTCAGTGGCACTCCTTTCAAAGCCCATGAGTCAGTGGCACCCT
1 TTCAAAGCCCA--CAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCT
** * *
273467 TTCAAAGCCCATGAGTCAGTGGCAC-CTTTTC-AAGCCTACAAGTCAGTGGCA-CAT
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCT
* * **
273521 TTC-AAGCCCACAAGTCAGTGGCA-TTTTTTCAAAACCCACAAGTCAGTGGCACTTT
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCT
* * * *
273576 TTC-AAGTCCACAAGTTAGTGGCACT-TTTTCAAAGCCCACAAGTTAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCT
* * * *
273631 TTCAAAGCCTACAAGTCAGTGGCAC-CTTTTGAAAGCCCACAAGTCAGTGACACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCAC-CCT
** * **
273688 TTCAAAGCCCACAAGTCAGTAGTAACTCTTTTCAAAGCCCACATATGTCGGTGGCAACTTTT
1 TTCAAAGCCCACAAGTCAGT-GGCACTCTTTTCAAAGCCCACA-A-GTCAGTGGC-AC-CCT
*
273750 TTCAAAGCCTACACAAGTTAGTGGCAC
1 TTCAAAGCC--CACAAGTCAGTGGCAC
273777 ATTTTTTTTT
Statistics
Matches: 1240, Mismatches: 156, Indels: 137
0.81 0.10 0.09
Matches are distributed among these distances:
53 27 0.02
54 67 0.05
55 157 0.13
56 342 0.28
57 118 0.10
58 209 0.17
59 79 0.06
60 58 0.05
61 86 0.07
62 25 0.02
63 8 0.01
64 14 0.01
66 1 0.00
67 9 0.01
68 4 0.00
69 36 0.03
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.23
Consensus pattern (57 bp):
TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCT
Found at i:272378 original size:28 final size:28
Alignment explanation
Indices: 272252--272898 Score: 807
Period size: 28 Copynumber: 22.9 Consensus size: 28
272242 GTTCATTCCC
* *
272252 TTCAAAGCCCACGAGTCAGTGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCAC-CCT
*
272281 TTCAAAGCCCACGAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
*
272309 ATTCAAAGCCCACAAGTCAGTGGCACTCTT
1 -TTCAAAGCCCACAAGTCAGTGGCAC-CCT
*
272339 TTCAAAGCCCACAAGTTAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
272367 TTCAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* * **
272395 TTCAAAGCGCACAAGTCAATGGCACTTT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
*
272423 TTCAAAGCCCACAAGTCAGTGGCACTCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
272451 CTCAAAGCCCACAAGTCAGTGGCACCTT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
*
272479 TTC-AAGCCCACAAGTCAGTGGCACTCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
272506 TTCAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
*
272534 TTCAAAGCCCACAAGTCAGTGGCACGCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
*
272562 TTCATAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
272590 TTCGAAGCCCACAAGTTAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* * * *
272618 TTCGAAGCCCACAATTTAGTGGCACTCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
272646 TTCAAAGCCCACAAGTAAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
*
272674 TTCAAAGCCCACACAATTCAGTGGCACTCCT
1 TTCAAAG-CC-CACAAGTCAGTGGCAC-CCT
* *
272705 TTCAAAGCCCACACAAGTCGGTAGCAACTCCT
1 TTCAAAG-CC-CACAAGTCAGTGGC-AC-CCT
* * * * *
272737 TTTAAAGCCCATAAATCAGTTGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCAC-CCT
*
272766 TTCAAAGCCCACGAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
*
272794 TTC-AAGCCCACGAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
** * * *
272821 TTC-AAGCCCACGGGTTAGTCGTA-CCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
272847 TTCAAAGCCCACGAGTCAGTGGCACTCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
272875 TTCAAAGCCCACAAGTCAGTGGCA
1 TTCAAAGCCCACAAGTCAGTGGCA
272899 AGTCAGTGGC
Statistics
Matches: 548, Mismatches: 61, Indels: 19
0.87 0.10 0.03
Matches are distributed among these distances:
26 6 0.01
27 84 0.15
28 294 0.54
29 100 0.18
30 25 0.05
31 27 0.05
32 12 0.02
ACGTcount: A:0.28, C:0.32, G:0.19, T:0.22
Consensus pattern (28 bp):
TTCAAAGCCCACAAGTCAGTGGCACCCT
Found at i:272744 original size:32 final size:31
Alignment explanation
Indices: 272252--273776 Score: 711
Period size: 28 Copynumber: 52.9 Consensus size: 31
272242 GTTCATTCCC
* * *
272252 TTCAAAG-CC-CACGAGTCAGTGGCACTCTT
1 TTCAAAGCCCACACAAGTCAGTAGCACTCCT
* *
272281 TTCAAAG-CC-CACGAGTCAGTGGCAC-CCT
1 TTCAAAGCCCACACAAGTCAGTAGCACTCCT
* *
272309 ATTCAAAG-CC-CACAAGTCAGTGGCACTCTT
1 -TTCAAAGCCCACACAAGTCAGTAGCACTCCT
* *
272339 TTCAAAG-CC-CACAAGTTAGTGGCAC-CCT
1 TTCAAAGCCCACACAAGTCAGTAGCACTCCT
*
272367 TTCAAAG-CC-CACAAGTCAGTGGCAC-CCT
1 TTCAAAGCCCACACAAGTCAGTAGCACTCCT
* * * *
272395 TTCAAAG--CGCACAAGTCAATGGCACT-TT
1 TTCAAAGCCCACACAAGTCAGTAGCACTCCT
*
272423 TTCAAAG-CC-CACAAGTCAGTGGCACT-CT
1 TTCAAAGCCCACACAAGTCAGTAGCACTCCT
* * *
272451 CTCAAAG-CC-CACAAGTCAGTGGCAC-CTT
1 TTCAAAGCCCACACAAGTCAGTAGCACTCCT
*
272479 TTC-AAG-CC-CACAAGTCAGTGGCACT-CT
1 TTCAAAGCCCACACAAGTCAGTAGCACTCCT
*
272506 TTCAAAG-CC-CACAAGTCAGTGGCAC-CCT
1 TTCAAAGCCCACACAAGTCAGTAGCACTCCT
* *
272534 TTCAAAG-CC-CACAAGTCAGTGGCAC-GCT
1 TTCAAAGCCCACACAAGTCAGTAGCACTCCT
* *
272562 TTCATAG-CC-CACAAGTCAGTGGCAC-CCT
1 TTCAAAGCCCACACAAGTCAGTAGCACTCCT
* * *
272590 TTCGAAG-CC-CACAAGTTAGTGGCAC-CCT
1 TTCAAAGCCCACACAAGTCAGTAGCACTCCT
* * * *
272618 TTCGAAG-CC-CACAATTTAGTGGCACT-CT
1 TTCAAAGCCCACACAAGTCAGTAGCACTCCT
* *
272646 TTCAAAG-CC-CACAAGTAAGTGGCA-TCCT
1 TTCAAAGCCCACACAAGTCAGTAGCACTCCT
* *
272674 TTCAAAGCCCACACAATTCAGTGGCACTCCT
1 TTCAAAGCCCACACAAGTCAGTAGCACTCCT
*
272705 TTCAAAGCCCACACAAGTCGGTAGCAACTCCT
1 TTCAAAGCCCACACAAGTCAGTAGC-ACTCCT
* * * *
272737 TTTAAAGCCCATA-AA-TCAGTTGCACTCTT
1 TTCAAAGCCCACACAAGTCAGTAGCACTCCT
* *
272766 TTCAAAG-CC-CACGAGTCAGTGGCAC-CCT
1 TTCAAAGCCCACACAAGTCAGTAGCACTCCT
* *
272794 TTC-AAG-CC-CACGAGTCAGTGGCAC-CCT
1 TTCAAAGCCCACACAAGTCAGTAGCACTCCT
** * * *
272821 TTC-AAG-CC-CACGGGTTAGTCGTA--CCT
1 TTCAAAGCCCACACAAGTCAGTAGCACTCCT
* *
272847 TTCAAAG-CC-CACGAGTCAGTGGCACT-CT
1 TTCAAAGCCCACACAAGTCAGTAGCACTCCT
*
272875 TTCAAAG-CC-CACAAGTCAGTGGCAAGTCAGTGGCACCCT
1 TTCAAAGCCCACACAAGTCAGT----AG-CA----C-TCCT
* * * *
272914 TTTAAAGCCCACGCAAGTCAGTGGCAC-CTT
1 TTCAAAGCCCACACAAGTCAGTAGCACTCCT
* * *
272944 TTCAAAG-CC-CACGAGTCAGTGGCAC-CTTT
1 TTCAAAGCCCACACAAGTCAGTAGCACTC-CT
* *
272973 TTCAAAG-CC-CATAAGTCAGTGGCACT-CT
1 TTCAAAGCCCACACAAGTCAGTAGCACTCCT
* *
273001 TTCAAAG-CC-CACAAGTCGGTGGCA-TCCT
1 TTCAAAGCCCACACAAGTCAGTAGCACTCCT
* * * *
273029 TTCAAAGCCCACGCAAGTTAGTGGCAC-CTT
1 TTCAAAGCCCACACAAGTCAGTAGCACTCCT
* * *
273059 TTCAAA-ACC-CACGAGTCAGTGGCACT-CT
1 TTCAAAGCCCACACAAGTCAGTAGCACTCCT
* *
273087 TTCAAAG-CC-CACAAGTTAGTGGCA-TCCT
1 TTCAAAGCCCACACAAGTCAGTAGCACTCCT
* *
273115 TTCAAAGCCCACGCAAGTCAGTGGCAC-CCT
1 TTCAAAGCCCACACAAGTCAGTAGCACTCCT
* * *
273145 TTTAAAGCCCACACAAGTCAGTGGCAC-CTT
1 TTCAAAGCCCACACAAGTCAGTAGCACTCCT
* * *
273175 TTCAAAG-CC-CACGAGTCAATGGCACT-CT
1 TTCAAAGCCCACACAAGTCAGTAGCACTCCT
* * *
273203 TTGAGAG-CC-CACAAGTCAGTGGCA-TCCT
1 TTCAAAGCCCACACAAGTCAGTAGCACTCCT
* *
273231 TTCAAAGCCCACACAAGTCAATAGCACTCTT
1 TTCAAAGCCCACACAAGTCAGTAGCACTCCT
* * *
273262 TTCAAAGCCCACGCAAGTTAGTGGCACAT--T
1 TTCAAAGCCCACACAAGTCAGTAGCAC-TCCT
* * *
273292 TTC-CAG-CC-CACGAGTCAGTGGCACT-CT
1 TTCAAAGCCCACACAAGTCAGTAGCACTCCT
* *
273319 TTCAAAG-CC-CACAAGTTAGTGGCA-TCCT
1 TTCAAAGCCCACACAAGTCAGTAGCACTCCT
* * * *
273347 TTCAAAGCCCACGCAAGTTAGTGGCA-ACCT
1 TTCAAAGCCCACACAAGTCAGTAGCACTCCT
* * **
273377 TTTAAAGCCCACGCAAGTCAGTAGCACTATT
1 TTCAAAGCCCACACAAGTCAGTAGCACTCCT
* *
273408 TTCAAAGCCCACGCAAGTCAGTGGCACTCCT
1 TTCAAAGCCCACACAAGTCAGTAGCACTCCT
** *
273439 TTCAAAG-CC-CATGAGTCAGTGGCAC-CCT
1 TTCAAAGCCCACACAAGTCAGTAGCACTCCT
** * *
273467 TTCAAAG-CC-CATGAGTCAGTGGCAC-CTT
1 TTCAAAGCCCACACAAGTCAGTAGCACTCCT
* * *
273495 TTC-AAG-CC-TACAAGTCAGTGGCA--CAT
1 TTCAAAGCCCACACAAGTCAGTAGCACTCCT
* **
273521 TTC-AAG-CC-CACAAGTCAGTGGCA-TTTT
1 TTCAAAGCCCACACAAGTCAGTAGCACTCCT
* * *
273548 TTCAAA-ACC-CACAAGTCAGTGGCACT-TT
1 TTCAAAGCCCACACAAGTCAGTAGCACTCCT
* * * *
273576 TTC-AAG-TC-CACAAGTTAGTGGCACT-TT
1 TTCAAAGCCCACACAAGTCAGTAGCACTCCT
* *
273603 TTCAAAG-CC-CACAAGTTAGTGGCA-TCCT
1 TTCAAAGCCCACACAAGTCAGTAGCACTCCT
* * *
273631 TTCAAAG-CC-TACAAGTCAGTGGCAC-CTT
1 TTCAAAGCCCACACAAGTCAGTAGCACTCCT
* *
273659 TTGAAAG-CC-CACAAGTCAGT-GACACTCTT
1 TTCAAAGCCCACACAAGTCAGTAG-CACTCCT
* *
273688 TTCAAAG-CC-CACAAGTCAGTAGTAACTCTT
1 TTCAAAGCCCACACAAGTCAGTAG-CACTCCT
* * * * **
273718 TTCAAAGCCCACATATGTCGGTGGCAACTTTT
1 TTCAAAGCCCACACAAGTCAGTAGC-ACTCCT
* * *
273750 TTCAAAGCCTACACAAGTTAGTGGCAC
1 TTCAAAGCCCACACAAGTCAGTAGCAC
273777 ATTTTTTTTT
Statistics
Matches: 1277, Mismatches: 148, Indels: 140
0.82 0.09 0.09
Matches are distributed among these distances:
26 31 0.02
27 155 0.12
28 574 0.45
29 173 0.14
30 171 0.13
31 93 0.07
32 54 0.04
33 2 0.00
36 2 0.00
37 2 0.00
39 8 0.01
40 2 0.00
41 10 0.01
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.23
Consensus pattern (31 bp):
TTCAAAGCCCACACAAGTCAGTAGCACTCCT
Found at i:272921 original size:39 final size:40
Alignment explanation
Indices: 272860--272939 Score: 126
Period size: 39 Copynumber: 2.0 Consensus size: 40
272850 AAAGCCCACG
*
272860 AGTCAGTGGCACTCTTTCAAAGCCCA-CAAGTCAGTGGCA
1 AGTCAGTGGCACCCTTTCAAAGCCCACCAAGTCAGTGGCA
*
272899 AGTCAGTGGCACCCTTTTAAAGCCCACGCAAGTCAGTGGCA
1 AGTCAGTGGCACCCTTTCAAAGCCCAC-CAAGTCAGTGGCA
272940 CCTTTTCAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
39 24 0.65
41 13 0.35
ACGTcount: A:0.28, C:0.29, G:0.24, T:0.20
Consensus pattern (40 bp):
AGTCAGTGGCACCCTTTCAAAGCCCACCAAGTCAGTGGCA
Found at i:272969 original size:28 final size:28
Alignment explanation
Indices: 272897--273781 Score: 850
Period size: 28 Copynumber: 30.7 Consensus size: 28
272887 AAGTCAGTGG
272897 CAAGTCAGTGGCACCCTTTT-AAAGCCCA
1 CAAGTCAGTGGCA-CCTTTTCAAAGCCCA
272925 CGCAAGTCAGTGGCACCTTTTCAAAGCCCA
1 --CAAGTCAGTGGCACCTTTTCAAAGCCCA
*
272955 CGAGTCAGTGGCACCTTTTTCAAAGCCCA
1 CAAGTCAGTGGCACC-TTTTCAAAGCCCA
*
272984 TAAGTCAGTGGCA-CTCTTTCAAAGCCCA
1 CAAGTCAGTGGCACCT-TTTCAAAGCCCA
*
273012 CAAGTCGGTGGCATCC-TTTCAAAGCCCA
1 CAAGTCAGTGGCA-CCTTTTCAAAGCCCA
* *
273040 CGCAAGTTAGTGGCACCTTTTCAAAACCCA
1 --CAAGTCAGTGGCACCTTTTCAAAGCCCA
*
273070 CGAGTCAGTGGCA-CTCTTTCAAAGCCCA
1 CAAGTCAGTGGCACCT-TTTCAAAGCCCA
*
273098 CAAGTTAGTGGCATCC-TTTCAAAGCCCA
1 CAAGTCAGTGGCA-CCTTTTCAAAGCCCA
273126 CGCAAGTCAGTGGCACCCTTTT-AAAGCCCACA
1 --CAAGTCAGTGGCA-CCTTTTCAAAG-CC-CA
273158 CAAGTCAGTGGCACCTTTTCAAAGCCCA
1 CAAGTCAGTGGCACCTTTTCAAAGCCCA
* * * *
273186 CGAGTCAATGGCA-CTCTTTGAGAGCCCA
1 CAAGTCAGTGGCACCT-TTTCAAAGCCCA
273214 CAAGTCAGTGGCATCC-TTTCAAAGCCCACA
1 CAAGTCAGTGGCA-CCTTTTCAAAG-CC-CA
* *
273244 CAAGTCAATAGCACTCTTTTCAAAGCCCA
1 CAAGTCAGTGGCAC-CTTTTCAAAGCCCA
* * *
273273 CGCAAGTTAGTGGCACATTTTC-CAGCCCA
1 --CAAGTCAGTGGCACCTTTTCAAAGCCCA
*
273302 CGAGTCAGTGGCA-CTCTTTCAAAGCCCA
1 CAAGTCAGTGGCACCT-TTTCAAAGCCCA
*
273330 CAAGTTAGTGGCATCC-TTTCAAAGCCCA
1 CAAGTCAGTGGCA-CCTTTTCAAAGCCCA
*
273358 CGCAAGTTAGTGGCAACCTTTT-AAAGCCCA
1 --CAAGTCAGTGGC-ACCTTTTCAAAGCCCA
* *
273388 CGCAAGTCAGTAGCACTATTTTCAAAGCCCA
1 --CAAGTCAGTGGCAC-CTTTTCAAAGCCCA
*
273419 CGCAAGTCAGTGGCACTCCTTTCAAAGCCCA
1 --CAAGTCAGTGGCAC-CTTTTCAAAGCCCA
** *
273450 TGAGTCAGTGGCACCCTTTCAAAGCCCA
1 CAAGTCAGTGGCACCTTTTCAAAGCCCA
** *
273478 TGAGTCAGTGGCACCTTTTC-AAGCCTA
1 CAAGTCAGTGGCACCTTTTCAAAGCCCA
*
273505 CAAGTCAGTGGCA-CATTTC-AAGCCCA
1 CAAGTCAGTGGCACCTTTTCAAAGCCCA
** *
273531 CAAGTCAGTGGCATTTTTTCAAAACCCA
1 CAAGTCAGTGGCACCTTTTCAAAGCCCA
* *
273559 CAAGTCAGTGGCACTTTTTC-AAGTCCA
1 CAAGTCAGTGGCACCTTTTCAAAGCCCA
* *
273586 CAAGTTAGTGGCACTTTTTCAAAGCCCA
1 CAAGTCAGTGGCACCTTTTCAAAGCCCA
* *
273614 CAAGTTAGTGGCATCC-TTTCAAAGCCTA
1 CAAGTCAGTGGCA-CCTTTTCAAAGCCCA
*
273642 CAAGTCAGTGGCACCTTTTGAAAGCCCA
1 CAAGTCAGTGGCACCTTTTCAAAGCCCA
*
273670 CAAGTCAGTGACACTCTTTTCAAAGCCCA
1 CAAGTCAGTGGCAC-CTTTTCAAAGCCCA
**
273699 CAAGTCAGTAGTAACTCTTTTCAAAGCCCA
1 CAAGTCAGT-GGCAC-CTTTTCAAAGCCCA
* *
273729 CATATGTCGGTGGCAACTTTTTTCAAAGCCTACA
1 CA-A-GTCAGTGGC-AC-CTTTTCAAAGCC--CA
* *
273763 CAAGTTAGTGGCACATTTT
1 CAAGTCAGTGGCACCTTTT
273782 TTTTTAAAAA
Statistics
Matches: 733, Mismatches: 74, Indels: 96
0.81 0.08 0.11
Matches are distributed among these distances:
26 25 0.03
27 67 0.09
28 287 0.39
29 88 0.12
30 165 0.23
31 68 0.09
32 28 0.04
33 1 0.00
34 4 0.01
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (28 bp):
CAAGTCAGTGGCACCTTTTCAAAGCCCA
Done.