Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2721
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 153572
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.33
Found at i:1713 original size:20 final size:19
Alignment explanation
Indices: 1659--1714 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 19
1649 AAAACCCTTA
*
1659 AAAGTATCGATACACAGTTC
1 AAAGTATCGATACA-TGTTC
1679 AAAGTATCGATACATGTTGC
1 AAAGTATCGATACATGTT-C
*
1699 AATGTATCGATACATG
1 AAAGTATCGATACATG
1715 AAAAAGATGT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 3 0.09
20 30 0.91
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.29
Consensus pattern (19 bp):
AAAGTATCGATACATGTTC
Found at i:1807 original size:32 final size:33
Alignment explanation
Indices: 1766--1830 Score: 105
Period size: 34 Copynumber: 2.0 Consensus size: 33
1756 TAGCCAAACT
1766 TGTATCGATACAC-AAAATATGAATCGATACAA
1 TGTATCGATACACAAAAATATGAATCGATACAA
*
1798 TGTATCGATACACAAAAAATATGTATCGATACA
1 TGTATCGATACAC-AAAAATATGAATCGATACA
1831 TTGGCTTGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 13 0.43
34 17 0.57
ACGTcount: A:0.46, C:0.15, G:0.12, T:0.26
Consensus pattern (33 bp):
TGTATCGATACACAAAAATATGAATCGATACAA
Found at i:5901 original size:15 final size:15
Alignment explanation
Indices: 5881--5911 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
5871 TAAAAATGTC
*
5881 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
5896 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
5911 C
1 C
5912 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:8009 original size:13 final size:13
Alignment explanation
Indices: 7991--8041 Score: 93
Period size: 13 Copynumber: 3.9 Consensus size: 13
7981 CATTTTTCTT
*
7991 TGTATCGATACAA
1 TGTATCGATACAC
8004 TGTATCGATACAC
1 TGTATCGATACAC
8017 TGTATCGATACAC
1 TGTATCGATACAC
8030 TGTATCGATACA
1 TGTATCGATACA
8042 GGGGGATTAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
13 37 1.00
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:13336 original size:52 final size:52
Alignment explanation
Indices: 13266--13386 Score: 215
Period size: 52 Copynumber: 2.3 Consensus size: 52
13256 GAAAATTTAT
*
13266 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
* *
13318 TTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
13370 CTGCATGTATCGATACA
1 CTGCATGTATCGATACA
13387 AAGATCGGTG
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 65 1.00
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
Found at i:13399 original size:52 final size:52
Alignment explanation
Indices: 13266--13406 Score: 187
Period size: 52 Copynumber: 2.7 Consensus size: 52
13256 GAAAATTTAT
*
13266 CTGCATGTATCGATACATTTA-ATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TAAGATAGTGTATCGATACATCTGGGCAAATTTGC
* *** *
13318 TTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATAAGATAGTGTATCGATACATCTGGGCAAATTTGC
*
13370 CTGCATGTATCGATACA-AAGATCGGTGTATCGATACA
1 CTGCATGTATCGATACATAAGAT-AGTGTATCGATACA
13407 ATGTATCGAT
Statistics
Matches: 78, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
51 4 0.05
52 74 0.95
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (52 bp):
CTGCATGTATCGATACATAAGATAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:13413 original size:13 final size:13
Alignment explanation
Indices: 13395--13419 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13385 CAAAGATCGG
13395 TGTATCGATACAA
1 TGTATCGATACAA
13408 TGTATCGATACA
1 TGTATCGATACA
13420 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:13505 original size:33 final size:33
Alignment explanation
Indices: 13461--13527 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
13451 AGTAGCTTAA
*
13461 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTACCGATACAAAAAAATATGTATCGATAC
* ***
13494 ATTGTACCGATACAACATTTTATGTATCGATAC
1 ATTGTACCGATACAAAAAAATATGTATCGATAC
13527 A
1 A
13528 AATCGTTGAA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (33 bp):
ATTGTACCGATACAAAAAAATATGTATCGATAC
Found at i:14496 original size:49 final size:49
Alignment explanation
Indices: 14278--14882 Score: 675
Period size: 49 Copynumber: 12.7 Consensus size: 49
14268 AAAAGGATGT
* *
14278 CAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGC
* * *
14330 CGATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGGAAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGC
* * * *
14382 CAATATGTTGATTCAAGGTCAGCGATATTGGACTT----A--AAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* **
14425 CAATGTGCTGATTCAATACCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
14474 CAATATGCTGATTCAAGGCCAGCTATATTGG-GTT---TA-G-AGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
14517 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAAGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
14566 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG--G-A---GC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
14609 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTTAAGAAGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
14658 CAATATGCTGATTCAAGGCCAGTTATATTGAACTT----A--AAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
14701 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTG-AGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
14749 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
14798 CAATATGCTGATTCAGGGCCAGCTACATTGGACTTAAAGAAGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
14847 CAATATGCTGATTCAAGGCCAACTATATTGGGCTTA
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTA
14883 GAAGGGTTGC
Statistics
Matches: 476, Mismatches: 52, Indels: 53
0.82 0.09 0.09
Matches are distributed among these distances:
43 145 0.30
44 3 0.01
45 3 0.01
46 2 0.00
47 3 0.01
48 50 0.11
49 192 0.40
52 78 0.16
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (49 bp):
CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
Found at i:14519 original size:92 final size:92
Alignment explanation
Indices: 14322--14887 Score: 785
Period size: 92 Copynumber: 6.1 Consensus size: 92
14312 TAAAGATGGA
* * *
14322 AAAGGTGCCGATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGGAA-AAGGTGCCAAT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAA----GAAGAAGGTGCCAAT
* * *
14386 ATGTTGATTCAAGGTCAGCGATATTGGACTT
62 ATGCTGATTCAAGGCCAGCTATATTGGACTT
** *
14417 AAAGGTGCCAATGTGCTGATTCAATACCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
**
14482 TGATTCAAGGCCAGCTATATTGGGTTT
66 TGATTCAAGGCCAGCTATATTGGACTT
* *
14509 AGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAAGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
*
14574 TGATTCAAGGCCAGCGATATTGGACTT
66 TGATTCAAGGCCAGCTATATTGGACTT
* *
14601 AAAGGAGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTTAAGAAGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
* *
14666 TGATTCAAGGCCAGTTATATTGAACTT
66 TGATTCAAGGCCAGCTATATTGGACTT
** *
14693 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTG-AGGTGCCAATGTGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
*
14757 TGATTCAAGGCCAGCTACATTGGACTT
66 TGATTCAAGGCCAGCTATATTGGACTT
* *
14784 AAAGATGAAGGTGCCAATATGCTGATTCAGGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCA
1 ----A--AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCA
* *
14849 ATATGCTGATTCAAGGCCAACTATATTGGGCTT
60 ATATGCTGATTCAAGGCCAGCTATATTGGACTT
14882 AGAAGG
1 A-AAGG
14888 GTTGCCACCG
Statistics
Matches: 421, Mismatches: 42, Indels: 18
0.88 0.09 0.04
Matches are distributed among these distances:
91 39 0.09
92 252 0.60
93 5 0.01
94 1 0.00
95 42 0.10
97 45 0.11
98 37 0.09
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (92 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
TGATTCAAGGCCAGCTATATTGGACTT
Found at i:15001 original size:32 final size:32
Alignment explanation
Indices: 14875--15166 Score: 371
Period size: 32 Copynumber: 9.0 Consensus size: 32
14865 CCAACTATAT
14875 TGGGC-TT-AGAAGGGTTGCCACCGACTTGTG
1 TGGGCTTTGAGAAGGGTTGCCACCGACTTGTG
*
14905 TGGGCTTT-AGAAGAAGGTTGCCACCGACTTATG
1 TGGGCTTTGAGAAG--GGTTGCCACCGACTTGTG
*
14938 TGGGCTTTAGAGAAGGGTTTGCCACCGACTTGTA
1 TGGGCTTT-GAGAAGGG-TTGCCACCGACTTGTG
* *
14972 TGGGCTTTGAGAATGGTTGCCACCAACTTGTG
1 TGGGCTTTGAGAAGGGTTGCCACCGACTTGTG
15004 TGGGCTTT-AGAGAGGGTTGCCACCGACTTGTG
1 TGGGCTTTGAGA-AGGGTTGCCACCGACTTGTG
15036 TGGGCTTTAGAGAAGGGTTTGCCACCGACTTGTG
1 TGGGCTTT-GAGAAGGG-TTGCCACCGACTTGTG
* * *
15070 TGGGCTTTAAGAATGGTTGCCACCAACTTGTG
1 TGGGCTTTGAGAAGGGTTGCCACCGACTTGTG
*
15102 TAGGCTTT-AGAGAGGGTTGCCACCGACTTGTG
1 TGGGCTTTGAGA-AGGGTTGCCACCGACTTGTG
*
15134 TGGGCTTT-AGAAGAAGGTTGCCGCCGACTTGTG
1 TGGGCTTTGAGAAG--GGTTGCCACCGACTTGTG
15167 GACTTAAAAG
Statistics
Matches: 233, Mismatches: 16, Indels: 23
0.86 0.06 0.08
Matches are distributed among these distances:
30 5 0.02
31 15 0.06
32 98 0.42
33 61 0.26
34 49 0.21
35 5 0.02
ACGTcount: A:0.19, C:0.18, G:0.34, T:0.29
Consensus pattern (32 bp):
TGGGCTTTGAGAAGGGTTGCCACCGACTTGTG
Found at i:15006 original size:66 final size:66
Alignment explanation
Indices: 14882--15166 Score: 420
Period size: 66 Copynumber: 4.3 Consensus size: 66
14872 TATTGGGCTT
*
14882 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAAGAA-GGTTGCCACCGACTTATGTGGGCTTT
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG-AGAAGGGTTGCCACCGACTTGTGTGGGCTTT
14946 AG
65 AG
* * *
14948 AGAAGGGTTTGCCACCGACTTGTATGGGCTTT-GAGAATGGTTGCCACCAACTTGTGTGGGCTTT
1 AGAAGGG-TTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGTGTGGGCTTT
15012 AG
65 AG
15014 AG-AGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTTGCCACCGACTTGTGTGGGCTTT
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGG-TTGCCACCGACTTGTGTGGGCTTT
15078 A-
65 AG
* * *
15079 AGAATGGTTGCCACCAACTTGTGTAGGCTTTAGAG-AGGGTTGCCACCGACTTGTGTGGGCTTTA
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGTGTGGGCTTTA
15143 G
66 G
*
15144 AAGAA-GGTTGCCGCCGACTTGTG
1 -AGAAGGGTTGCCACCGACTTGTG
15167 GACTTAAAAG
Statistics
Matches: 201, Mismatches: 11, Indels: 15
0.89 0.05 0.07
Matches are distributed among these distances:
64 48 0.24
65 37 0.18
66 93 0.46
67 23 0.11
ACGTcount: A:0.20, C:0.19, G:0.33, T:0.28
Consensus pattern (66 bp):
AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGTGTGGGCTTTA
G
Found at i:15057 original size:98 final size:97
Alignment explanation
Indices: 14875--15165 Score: 462
Period size: 98 Copynumber: 3.0 Consensus size: 97
14865 CCAACTATAT
* * * *
14875 TGGGC-TTAGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAAGAAGGTTGCCACCGACTTATGT
1 TGGGCTTTAGAATGGTTGCCACCAACTTGTGTGGGCTTTAG-AGAGGGTTGCCACCGACTTGTGT
14939 GGGCTTTAGAGAAGGGTTTGCCACCGACTTGTA
65 GGGCTTTAGAGAAGGGTTTGCCACCGACTTGTA
14972 TGGGCTTTGAGAATGGTTGCCACCAACTTGTGTGGGCTTTAGAGAGGGTTGCCACCGACTTGTGT
1 TGGGCTTT-AGAATGGTTGCCACCAACTTGTGTGGGCTTTAGAGAGGGTTGCCACCGACTTGTGT
*
15037 GGGCTTTAGAGAAGGGTTTGCCACCGACTTGTG
65 GGGCTTTAGAGAAGGGTTTGCCACCGACTTGTA
*
15070 TGGGCTTTAAGAATGGTTGCCACCAACTTGTGTAGGCTTTAGAGAGGGTTGCCACCGACTTGTGT
1 TGGGCTTT-AGAATGGTTGCCACCAACTTGTGTGGGCTTTAGAGAGGGTTGCCACCGACTTGTGT
*
15135 GGGCTTTAGAAGAA-GG-TTGCCGCCGACTTGT
65 GGGCTTTAG-AGAAGGGTTTGCCACCGACTTGT
15166 GGACTTAAAA
Statistics
Matches: 183, Mismatches: 8, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
97 19 0.10
98 129 0.70
99 35 0.19
ACGTcount: A:0.19, C:0.19, G:0.33, T:0.29
Consensus pattern (97 bp):
TGGGCTTTAGAATGGTTGCCACCAACTTGTGTGGGCTTTAGAGAGGGTTGCCACCGACTTGTGTG
GGCTTTAGAGAAGGGTTTGCCACCGACTTGTA
Found at i:15311 original size:34 final size:30
Alignment explanation
Indices: 15162--15704 Score: 289
Period size: 34 Copynumber: 17.4 Consensus size: 30
15152 TGCCGCCGAC
* *
15162 TTGTGGACTTAAAAGGAAAAGAGTGCCACGTAG
1 TTGTGGGCTT-AAA-GAAAAG-GTGCCACGGAG
15195 TTGTGGGCTTTAAAGGAAAAAAGGGTGCCACGGAG
1 TTGTGGGC-TTAAA-G--AAAA-GGTGCCACGGAG
* * * *
15230 TCGTGGACTT--A-AAAGGGTGCCATGGAG
1 TTGTGGGCTTAAAGAAAAGGTGCCACGGAG
15257 TTGTGGGCTTAAACG----GGTGCCACGGAG
1 TTGTGGGCTTAAA-GAAAAGGTGCCACGGAG
* *
15284 TTGTGGACTTAGAAGGAAAACGAGTGCCACGAAG
1 TTGTGGGCTTA-AA-GAAAA-G-GTGCCACGGAG
* * * *
15318 TTGTGGGCTT-TA-AAAGGGTGTCACGAAG
1 TTGTGGGCTTAAAGAAAAGGTGCCACGGAG
* * * * *
15346 TTGTGGACTTTGATGAGAAGGTGCCACTGAG
1 TTGTGGGC-TTAAAGAAAAGGTGCCACGGAG
* *
15377 TTGTGGACTT--A-AAAGGGTGCCACGGAG
1 TTGTGGGCTTAAAGAAAAGGTGCCACGGAG
15404 TTGTGGGCTTAAACGGGAAAAGAGTGCCACGGAG
1 TTGTGGGCTTAAA---GAAAAG-GTGCCACGGAG
*
15438 CTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAG
1 TTGTGGGC-TT--AAAG-AAAAGGTGCCACGGAG
15472 TTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAG
1 TTGTGGGC-TT--AAAG-AAAAGGTGCCACGGAG
* *
15506 TTGTGGACTTAAAGATGAAAAAAGTGCCACGGAG
1 TTGTGGGCTT-AA-A-G-AAAAGGTGCCACGGAG
*
15540 TTGTGGGCTT--AG-AAGGGTGCCACGGAG
1 TTGTGGGCTTAAAGAAAAGGTGCCACGGAG
* * *
15567 TTGTGGACTCAAAGATAAAAAAAGTGCCACGGAG
1 TTGTGGGCTTAAAG----AAAAGGTGCCACGGAG
* *
15601 TTGTGGGC-T--A-AAAGGGTGCCACAGAG
1 TTGTGGGCTTAAAGAAAAGGTGCCACGGAG
*
15627 TTGTGGGCTTTGAAA-AGAAGGTGCCACGGAG
1 TTGTGGGC-TT-AAAGAAAAGGTGCCACGGAG
* *
15658 TCGTGGACTTTAAAAGGGAAAAAGAGTGCCACGGAG
1 TTGTGGGC-TT-AAA--G-AAAAG-GTGCCACGGAG
15694 TTGTGGGCTTA
1 TTGTGGGCTTA
15705 GAAAGGGAGG
Statistics
Matches: 407, Mismatches: 55, Indels: 95
0.73 0.10 0.17
Matches are distributed among these distances:
26 21 0.05
27 83 0.20
28 24 0.06
29 8 0.02
30 6 0.01
31 46 0.11
32 5 0.01
33 20 0.05
34 140 0.34
35 33 0.08
36 18 0.04
37 3 0.01
ACGTcount: A:0.30, C:0.14, G:0.35, T:0.21
Consensus pattern (30 bp):
TTGTGGGCTTAAAGAAAAGGTGCCACGGAG
Found at i:15395 original size:120 final size:114
Alignment explanation
Indices: 15162--15452 Score: 325
Period size: 120 Copynumber: 2.4 Consensus size: 114
15152 TGCCGCCGAC
*
15162 TTGTGGACTTAAAAGGAAAAGAGTGCCACGTAGTTGTGGGCTTTAAAGGAAAAAAGGGTGCCACG
1 TTGTGGACTT-AAAGGAAAAGAGTGCCACGAAGTTGTGGGCTTT-------AAAAGGGTGCCACG
* * *
15227 GAGTCGTGGACTTAAAAGGGTGCCATGGAGTTGTGGGCTTAAACGGGTGCCACGGAG
58 AAGTCGTGGACTTAAAAGGGTGCCATGGAGTTGTGGACTTAAAAGGGTGCCACGGAG
* *
15284 TTGTGGACTTAGAAGGAAAACGAGTGCCACGAAGTTGTGGGCTTTAAAAGGGTGTCACGAAGTTG
1 TTGTGGACTTA-AAGGAAAA-GAGTGCCACGAAGTTGTGGGCTTTAAAAGGGTGCCACGAAGTCG
15349 TGGACTTTGATGAGAA-GGTGCCACT-GAGTTGTGGACTTAAAAGGGTGCCACGGAG
64 TGGAC-TT-A--A-AAGGGTGCCA-TGGAGTTGTGGACTTAAAAGGGTGCCACGGAG
* * *
15404 TTGTGGGCTTAAACGGGAAAAGAGTGCCACGGAGCTGTGGGCTTTAAAA
1 TTGTGGACTTAAA--GGAAAAGAGTGCCACGAAGTTGTGGGCTTTAAAA
15453 AGAAAAAGGT
Statistics
Matches: 150, Mismatches: 9, Indels: 22
0.83 0.05 0.12
Matches are distributed among these distances:
116 22 0.15
117 2 0.01
118 1 0.01
119 2 0.01
120 72 0.48
121 10 0.07
122 18 0.12
123 23 0.15
ACGTcount: A:0.28, C:0.14, G:0.35, T:0.23
Consensus pattern (114 bp):
TTGTGGACTTAAAGGAAAAGAGTGCCACGAAGTTGTGGGCTTTAAAAGGGTGCCACGAAGTCGTG
GACTTAAAAGGGTGCCATGGAGTTGTGGACTTAAAAGGGTGCCACGGAG
Found at i:15532 original size:102 final size:98
Alignment explanation
Indices: 15387--15704 Score: 331
Period size: 102 Copynumber: 3.3 Consensus size: 98
15377 TTGTGGACTT
* * *
15387 AAAAGGGTGCCACGGAGTTGTGGGCTTAAACGGGAAAAGAGTGCCACGGAGCTGTGGGCTTTAAA
1 AAAAAGGTGCCACGGAGTTGTGGGCTTAAA-GAGAAAA-AGTGCCACGGAGTTGTGGGCTTT-AA
*
15452 AAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAA-AG
63 AAG--AAAGGTGCCACGGAGTTGTGGACTTTAAAAGAG
*
15489 AAAAAGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAGTTGTGGGC-TT---
1 AAAAAGGTGCCACGGAGTTGTGGGCTTAAAGA-G-AAAAAGTGCCACGGAGTTGTGGGCTTTAAA
* * *
15550 AGAAGGGTGCCACGGAGTTGTGGAC--TCAAAGATA
64 AGAAAGGTGCCACGGAGTTGTGGACTTTAAAAGA-G
* * *
15584 AAAAAAGTGCCACGGAGTTGTGGGC-TAAA-AG----GGTGCCACAGAGTTGTGGGCTTTGAAAA
1 AAAAAGGTGCCACGGAGTTGTGGGCTTAAAGAGAAAAAGTGCCACGGAGTTGTGGGCTTT-AAAA
* *
15643 G-AAGGTGCCACGGAGTCGTGGACTTTAAAAGGG
65 GAAAGGTGCCACGGAGTTGTGGACTTTAAAAGAG
15676 AAAAAGAGTGCCACGGAGTTGTGGGCTTA
1 AAAAAG-GTGCCACGGAGTTGTGGGCTTA
15705 GAAAGGGAGG
Statistics
Matches: 185, Mismatches: 18, Indels: 34
0.78 0.08 0.14
Matches are distributed among these distances:
87 18 0.10
88 2 0.01
91 20 0.11
92 8 0.04
93 29 0.16
94 7 0.04
95 44 0.24
97 2 0.01
101 3 0.02
102 48 0.26
103 4 0.02
ACGTcount: A:0.32, C:0.14, G:0.35, T:0.19
Consensus pattern (98 bp):
AAAAAGGTGCCACGGAGTTGTGGGCTTAAAGAGAAAAAGTGCCACGGAGTTGTGGGCTTTAAAAG
AAAGGTGCCACGGAGTTGTGGACTTTAAAAGAG
Found at i:15544 original size:222 final size:221
Alignment explanation
Indices: 15272--15703 Score: 558
Period size: 222 Copynumber: 1.9 Consensus size: 221
15262 GGCTTAAACG
*
15272 GGTGCCACGGAGTTGTGGACTTAGAAGGAAAACGAGTGCCACGAAGTTGTGGGCTTTAAAAGGGT
1 GGTGCCACGGAGTTGTGGACTTAGAAGGAAAACAAGTGCCACGAAGTTGTGGGC-TTAAAAGGGT
* ** * * * *
15337 GTCACGAAGTTGTGGACT-TTGAT-GAGAAGGTGCCACTGAGTTGTGGACTTAAAAGGGTGCCAC
65 GCCACGAAGTTGTGGACTAAAGATAAAAAAAGTGCCACGGAGTTGTGGAC-TAAAAGGGTGCCAC
* *
15400 GGAGTTGTGGGCTTAAACGGGAAAAG-A-GTGCCACGGAG-CTGTGGGCTTTAAAA-AGAAAAAG
129 AGAGTTGTGGGCTT-----GGAAAAGAAGGTGCCACGGAGTC-GTGGACTTTAAAAGAGAAAAAG
15461 -GTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAA
188 AGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAA
* *
15494 GGTGCCACGGAGTTGTGGACTTA-AAGATGAAAA-AAGTGCCACGGAGTTGTGGGCTTAGAAGGG
1 GGTGCCACGGAGTTGTGGACTTAGAAG--GAAAACAAGTGCCACGAAGTTGTGGGCTTAAAAGGG
* *
15557 TGCCACGGAGTTGTGGACTCAAAGATAAAAAAAGTGCCACGGAGTTGTGGGCTAAAAGGGTGCCA
64 TGCCACGAAGTTGTGGACT-AAAGATAAAAAAAGTGCCACGGAGTTGTGGACTAAAAGGGTGCCA
* *
15622 CAGAGTTGTGGGCTTTGAAAAGAAGGTGCCACGGAGTCGTGGACTTTAAAAGGGAAAAAGAGTGC
128 CAGAGTTGTGGGCTTGGAAAAGAAGGTGCCACGGAGTCGTGGACTTTAAAAGAGAAAAAGAGTGC
15687 CACGGAGTTGTGGGCTT
193 CACGGAGTTGTGGGCTT
15704 AGAAAGGGAG
Statistics
Matches: 184, Mismatches: 16, Indels: 20
0.84 0.07 0.09
Matches are distributed among these distances:
218 6 0.03
219 1 0.01
220 23 0.12
221 36 0.20
222 63 0.34
223 35 0.19
224 20 0.11
ACGTcount: A:0.30, C:0.14, G:0.35, T:0.21
Consensus pattern (221 bp):
GGTGCCACGGAGTTGTGGACTTAGAAGGAAAACAAGTGCCACGAAGTTGTGGGCTTAAAAGGGTG
CCACGAAGTTGTGGACTAAAGATAAAAAAAGTGCCACGGAGTTGTGGACTAAAAGGGTGCCACAG
AGTTGTGGGCTTGGAAAAGAAGGTGCCACGGAGTCGTGGACTTTAAAAGAGAAAAAGAGTGCCAC
GGAGTTGTGGGCTTTAAAAAGAAAAA
Found at i:15620 original size:26 final size:29
Alignment explanation
Indices: 15590--15730 Score: 99
Period size: 31 Copynumber: 4.6 Consensus size: 29
15580 GATAAAAAAA
15590 GTGCCACGGAGTTGTGGGC-T-AAAAG-G
1 GTGCCACGGAGTTGTGGGCTTGAAAAGAG
*
15616 GTGCCACAGAGTTGTGGGCTTTGAAAAGAAG
1 GTGCCACGGAGTTGTGGGC-TTGAAAAG-AG
* * *
15647 GTGCCACGGAGTCGTGGACTTTAAAAGGGAAAAAG
1 GTGCCACGGAGTTGTGGGCTTGAAAA--G----AG
*
15682 AGTGCCACGGAGTTGTGGGCTTAGAAAGGGAG
1 -GTGCCACGGAGTTGTGGGCTT-GAAA-AGAG
* *
15714 GTGCCACAGAGTCGTGG
1 GTGCCACGGAGTTGTGG
15731 ACTTTGAGCA
Statistics
Matches: 91, Mismatches: 11, Indels: 21
0.74 0.09 0.17
Matches are distributed among these distances:
26 18 0.20
28 1 0.01
29 5 0.05
30 6 0.07
31 32 0.35
32 3 0.03
35 3 0.03
36 20 0.22
37 3 0.03
ACGTcount: A:0.27, C:0.15, G:0.39, T:0.19
Consensus pattern (29 bp):
GTGCCACGGAGTTGTGGGCTTGAAAAGAG
Found at i:15628 original size:60 final size:61
Alignment explanation
Indices: 15489--15632 Score: 236
Period size: 61 Copynumber: 2.4 Consensus size: 61
15479 CTTTAAAAAG
* * *
15489 AAAAAGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAGTTGTGGGCTT
1 AAAAGGGTGCCACGGAGTTGTGGACTCAAAGATAAAAAAAGTGCCACGGAGTTGTGGGCTT
*
15550 AGAAGGGTGCCACGGAGTTGTGGACTCAAAGATAAAAAAAGTGCCACGGAGTTGTGGGC-T
1 AAAAGGGTGCCACGGAGTTGTGGACTCAAAGATAAAAAAAGTGCCACGGAGTTGTGGGCTT
*
15610 AAAAGGGTGCCACAGAGTTGTGG
1 AAAAGGGTGCCACGGAGTTGTGG
15633 GCTTTGAAAA
Statistics
Matches: 77, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
60 22 0.29
61 55 0.71
ACGTcount: A:0.32, C:0.14, G:0.35, T:0.19
Consensus pattern (61 bp):
AAAAGGGTGCCACGGAGTTGTGGACTCAAAGATAAAAAAAGTGCCACGGAGTTGTGGGCTT
Found at i:15718 original size:67 final size:67
Alignment explanation
Indices: 15610--15735 Score: 198
Period size: 67 Copynumber: 1.9 Consensus size: 67
15600 GTTGTGGGCT
* * *
15610 AAAAGGGTGCCACAGAGTTGTGGGCTTTGAAAAGAAGGTGCCACGGAGTCGTGGACTTTAAAAGG
1 AAAAGAGTGCCACAGAGTTGTGGGCTTAGAAAAGAAGGTGCCACAGAGTCGTGGACTTTAAAAGG
15675 GA
66 GA
* * *
15677 AAAAGAGTGCCACGGAGTTGTGGGCTTAGAAAGGGAGGTGCCACAGAGTCGTGGACTTT
1 AAAAGAGTGCCACAGAGTTGTGGGCTTAGAAAAGAAGGTGCCACAGAGTCGTGGACTTT
15736 GAGCAGAGAT
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
67 53 1.00
ACGTcount: A:0.29, C:0.14, G:0.37, T:0.20
Consensus pattern (67 bp):
AAAAGAGTGCCACAGAGTTGTGGGCTTAGAAAAGAAGGTGCCACAGAGTCGTGGACTTTAAAAGG
GA
Found at i:15757 original size:98 final size:93
Alignment explanation
Indices: 15550--15766 Score: 251
Period size: 98 Copynumber: 2.3 Consensus size: 93
15540 TTGTGGGCTT
* * **
15550 AGAAGGGTGCCACGGAGTTGTGGAC--TCAAAGATAAAAAAAGTGCCACGGAGTTGTGGGCTAAA
1 AGAA-GGTGCCACGGAGTCGTGGACTTTAAAAGGGAAAAAAAGTGCCACGGAGTTGTGGGCTAAA
* *
15613 AGGGTGCCACAGAGTTGTGGGCTTTGAAA
65 AGGGTGCCACAGAGTCGTGGACTTTGAAA
*
15642 AGAAGGTGCCACGGAGTCGTGGACTTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAGA
1 AGAAGGTGCCACGGAGTCGTGGACTTTAAAAGGGAAAAAAAGTGCCACGGAGTTGTGGGC-TA-A
**
15707 AAGGGAGGTGCCACAGAGTCGTGGACTTTGAGC
64 AA--G-GGTGCCACAGAGTCGTGGACTTTGAAA
* *
15740 AG-AGATTGCCACTGAGTCGTGGACTTT
1 AGAAG-GTGCCACGGAGTCGTGGACTTT
15767 GAAGAAAAGG
Statistics
Matches: 106, Mismatches: 11, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
91 19 0.18
92 4 0.04
93 30 0.28
94 2 0.02
95 3 0.03
97 3 0.03
98 45 0.42
ACGTcount: A:0.29, C:0.15, G:0.35, T:0.20
Consensus pattern (93 bp):
AGAAGGTGCCACGGAGTCGTGGACTTTAAAAGGGAAAAAAAGTGCCACGGAGTTGTGGGCTAAAA
GGGTGCCACAGAGTCGTGGACTTTGAAA
Found at i:15792 original size:63 final size:62
Alignment explanation
Indices: 15715--15834 Score: 163
Period size: 63 Copynumber: 1.9 Consensus size: 62
15705 GAAAGGGAGG
* * *
15715 TGCCACAGAGTCGTGGACTTTGAGCAG-AGATTGCCACTG-AGTCGTGGACTTTGAAGAAAAGGA
1 TGCCACAGAGTCGTGGACTTTGAGAAGAAG-GTGCCAC-GAAGTCATGGACTTT-AAGAAAAGGA
*
15778 TGCCACTGAGTCGTGGACTTTGAGAAGAAGGTGCCACGAAGTCATGGACTTTAAGAA
1 TGCCACAGAGTCGTGGACTTTGAGAAGAAGGTGCCACGAAGTCATGGACTTTAAGAA
15835 GGTATTTGAA
Statistics
Matches: 51, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
62 6 0.12
63 43 0.84
64 2 0.04
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (62 bp):
TGCCACAGAGTCGTGGACTTTGAGAAGAAGGTGCCACGAAGTCATGGACTTTAAGAAAAGGA
Found at i:15826 original size:31 final size:31
Alignment explanation
Indices: 15615--15835 Score: 171
Period size: 31 Copynumber: 6.9 Consensus size: 31
15605 GGGCTAAAAG
* * * *
15615 GGTGCCACAGAGTTGTGGGCTTTGAAAAGAA
1 GGTGCCACTGAGTCGTGGACTTTGAGAAGAA
* * *
15646 GGTGCCACGGAGTCGTGGACTTTAAAAGGGAAAAA
1 GGTGCCACTGAGTCGTGGACTTT----GAGAAGAA
* * * * *
15681 GAGTGCCACGGAGTTGTGGGCTTAGA-AAGGGA
1 G-GTGCCACTGAGTCGTGGACTTTGAGAA-GAA
* *
15713 GGTGCCACAGAGTCGTGGACTTTGAGCAG-A
1 GGTGCCACTGAGTCGTGGACTTTGAGAAGAA
*
15743 GATTGCCACTGAGTCGTGGACTTTGAAGAA-AA
1 G-GTGCCACTGAGTCGTGGACTTTG-AGAAGAA
15775 GGATGCCACTGAGTCGTGGACTTTGAGAAGAA
1 GG-TGCCACTGAGTCGTGGACTTTGAGAAGAA
* *
15807 GGTGCCAC-GAAGTCATGGACTTTAAGAAG
1 GGTGCCACTG-AGTCGTGGACTTTGAGAAG
15836 GTATTTGAAG
Statistics
Matches: 154, Mismatches: 23, Indels: 26
0.76 0.11 0.13
Matches are distributed among these distances:
30 3 0.02
31 91 0.59
32 35 0.23
35 6 0.04
36 19 0.12
ACGTcount: A:0.29, C:0.15, G:0.35, T:0.21
Consensus pattern (31 bp):
GGTGCCACTGAGTCGTGGACTTTGAGAAGAA
Found at i:15827 original size:94 final size:97
Alignment explanation
Indices: 15557--15829 Score: 221
Period size: 98 Copynumber: 2.9 Consensus size: 97
15547 CTTAGAAGGG
* * * * * *
15557 TGCCACGGAGTTGTGGAC--TCAAAGATAAAAAAAGTGCCACGGAGTTGTGGGC-TA-AAA-G--
1 TGCCACGGAGTCGTGGACTTTAAAAG-GAAAAAGAGTGCCACGGAGTCGTGGACTTAGAAAGGAA
** * ** *
15615 GGTGCCACAGAGTTGTGGGCTTTGAAAAGA-AGG
65 GGTGCCACAGAGTCATGGACTTTGAGCAGAGA-T
* * *
15648 TGCCACGGAGTCGTGGACTTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAGAAAGGGA
1 TGCCACGGAGTCGTGGACTTTAAAA-GGAAAAAGAGTGCCACGGAGTCGTGGACTTAGAAAGGAA
*
15713 GGTGCCACAGAGTCGTGGACTTTGAGCAGAGAT
65 GGTGCCACAGAGTCATGGACTTTGAGCAGAGAT
* * * * *
15746 TGCCACTGAGTCGTGGACTTT-GAA-GAAAAGGA-TGCCACTGAGTCGTGGACTTTGAGAA-GAA
1 TGCCACGGAGTCGTGGACTTTAAAAGGAAAAAGAGTGCCACGGAGTCGTGGACTTAGA-AAGGAA
15807 GGTGCCAC-GAAGTCATGGACTTT
65 GGTGCCACAG-AGTCATGGACTTT
15830 AAGAAGGTAT
Statistics
Matches: 153, Mismatches: 18, Indels: 19
0.81 0.09 0.10
Matches are distributed among these distances:
91 17 0.11
93 30 0.20
94 44 0.29
95 12 0.08
96 1 0.01
97 2 0.01
98 46 0.30
99 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.34, T:0.21
Consensus pattern (97 bp):
TGCCACGGAGTCGTGGACTTTAAAAGGAAAAAGAGTGCCACGGAGTCGTGGACTTAGAAAGGAAG
GTGCCACAGAGTCATGGACTTTGAGCAGAGAT
Found at i:27250 original size:52 final size:52
Alignment explanation
Indices: 27180--27300 Score: 206
Period size: 52 Copynumber: 2.3 Consensus size: 52
27170 GAAAATTTAT
*
27180 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
* * *
27232 TTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTTC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
27284 CTGCATGTATCGATACA
1 CTGCATGTATCGATACA
27301 AAGATCGGTG
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 64 1.00
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.36
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
Found at i:27313 original size:52 final size:52
Alignment explanation
Indices: 27180--27320 Score: 178
Period size: 52 Copynumber: 2.7 Consensus size: 52
27170 GAAAATTTAT
*
27180 CTGCATGTATCGATACATTTA-ATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TAAGATAGTGTATCGATACATCTGGGCAAATTTGC
* *** * *
27232 TTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTTC
1 CTGCATGTATCGATACATAAGATAGTGTATCGATACATCTGGGCAAATTTGC
*
27284 CTGCATGTATCGATACA-AAGATCGGTGTATCGATACA
1 CTGCATGTATCGATACATAAGAT-AGTGTATCGATACA
27321 ATGTATCGAT
Statistics
Matches: 77, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
51 4 0.05
52 73 0.95
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (52 bp):
CTGCATGTATCGATACATAAGATAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:27327 original size:13 final size:13
Alignment explanation
Indices: 27309--27333 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
27299 CAAAGATCGG
27309 TGTATCGATACAA
1 TGTATCGATACAA
27322 TGTATCGATACA
1 TGTATCGATACA
27334 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:27415 original size:13 final size:13
Alignment explanation
Indices: 27397--27421 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
27387 CAAAAAAATA
27397 TGTATCGATACAT
1 TGTATCGATACAT
27410 TGTATCGATACA
1 TGTATCGATACA
27422 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:27417 original size:33 final size:33
Alignment explanation
Indices: 27375--27441 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
27365 AGTAGCTTAA
27375 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
27408 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
27441 A
1 A
27442 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:28035 original size:20 final size:20
Alignment explanation
Indices: 27981--28036 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
27971 AAAACCCTTA
** *
27981 AAAGTATCGATACACATTTC
1 AAAGTATCGATACATGTTGC
28001 AAAGTATCGATACATGTTGC
1 AAAGTATCGATACATGTTGC
*
28021 AATGTATCGATACATG
1 AAAGTATCGATACATG
28037 AAAAAGATGT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (20 bp):
AAAGTATCGATACATGTTGC
Found at i:28112 original size:19 final size:19
Alignment explanation
Indices: 28088--28151 Score: 68
Period size: 21 Copynumber: 3.6 Consensus size: 19
28078 TAGCCAAACT
28088 TGTATCGATACACAAAATA
1 TGTATCGATACACAAAATA
28107 TGTATCGAT--AC---A-A
1 TGTATCGATACACAAAATA
28120 TGTATCGATACACAAAAAATA
1 TGTATCGATACAC--AAAATA
28141 TGTATCGATAC
1 TGTATCGATAC
28152 GTTGGCTTGT
Statistics
Matches: 37, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
13 10 0.27
14 1 0.03
15 2 0.05
17 2 0.05
19 9 0.24
20 1 0.03
21 12 0.32
ACGTcount: A:0.44, C:0.16, G:0.12, T:0.28
Consensus pattern (19 bp):
TGTATCGATACACAAAATA
Found at i:28124 original size:13 final size:13
Alignment explanation
Indices: 28106--28131 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
28096 TACACAAAAT
28106 ATGTATCGATACA
1 ATGTATCGATACA
28119 ATGTATCGATACA
1 ATGTATCGATACA
28132 CAAAAAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:28129 original size:32 final size:33
Alignment explanation
Indices: 28088--28151 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 33
28078 TAGCCAAACT
28088 TGTATCGATACAC-AAAATATGTATCGATACAA
1 TGTATCGATACACAAAAATATGTATCGATACAA
28120 TGTATCGATACACAAAAAATATGTATCGATAC
1 TGTATCGATACAC-AAAAATATGTATCGATAC
28152 GTTGGCTTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
32 13 0.43
34 17 0.57
ACGTcount: A:0.44, C:0.16, G:0.12, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAATATGTATCGATACAA
Found at i:33521 original size:20 final size:20
Alignment explanation
Indices: 33474--33548 Score: 71
Period size: 20 Copynumber: 3.8 Consensus size: 20
33464 AAAAAGACAT
*
33474 AATGTATCGATACATTGA-A
1 AATGTATCGATACATTCATA
*
33493 GAATATATCGATACATTCATA
1 -AATGTATCGATACATTCATA
* * * * *
33514 CATGTATCAATATATTGAAA
1 AATGTATCGATACATTCATA
33534 AATGTATCGATACAT
1 AATGTATCGATACAT
33549 CTGGGTAAAA
Statistics
Matches: 43, Mismatches: 11, Indels: 2
0.77 0.20 0.04
Matches are distributed among these distances:
20 42 0.98
21 1 0.02
ACGTcount: A:0.43, C:0.12, G:0.12, T:0.33
Consensus pattern (20 bp):
AATGTATCGATACATTCATA
Found at i:33531 original size:40 final size:39
Alignment explanation
Indices: 33471--33548 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
33461 GGCAAAAAGA
* *
33471 CATAATGTATCGATACATTGAAGAATATATCGATACATT
1 CATAATGTATCAATACATTGAAAAATATATCGATACATT
* *
33510 CATACATGTATCAATATATTGAAAAATGTATCGATACAT
1 CATA-ATGTATCAATACATTGAAAAATATATCGATACAT
33549 CTGGGTAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.42, C:0.13, G:0.12, T:0.33
Consensus pattern (39 bp):
CATAATGTATCAATACATTGAAAAATATATCGATACATT
Found at i:41523 original size:20 final size:20
Alignment explanation
Indices: 41498--41545 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
41488 AGAAAGTTTT
41498 GATACATTATGCTTTGTATC
1 GATACATTATGCTTTGTATC
*
41518 GATACATTATGCTTTGTATT
1 GATACATTATGCTTTGTATC
41538 GATACATT
1 GATACATT
41546 GTATCGATAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.27, C:0.12, G:0.15, T:0.46
Consensus pattern (20 bp):
GATACATTATGCTTTGTATC
Found at i:43284 original size:24 final size:24
Alignment explanation
Indices: 43252--43297 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
43242 TGGAGTAGGT
43252 TATACCATAAGTATGGATTGATCC
1 TATACCATAAGTATGGATTGATCC
*
43276 TATATCATAAGTATGGATTGAT
1 TATACCATAAGTATGGATTGAT
43298 TCCTCTCATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.35, C:0.11, G:0.17, T:0.37
Consensus pattern (24 bp):
TATACCATAAGTATGGATTGATCC
Found at i:46690 original size:13 final size:13
Alignment explanation
Indices: 46672--46696 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
46662 CATGGGATAT
46672 TGTATCGATACAA
1 TGTATCGATACAA
46685 TGTATCGATACA
1 TGTATCGATACA
46697 TAGTAAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:46697 original size:33 final size:33
Alignment explanation
Indices: 46652--46716 Score: 78
Period size: 33 Copynumber: 2.0 Consensus size: 33
46642 TATCACTGTT
* * *
46652 TGTATCAGTACATGGGATATTGTATCGATACAA
1 TGTATCAGTACATAGGAAAATGTATCGATACAA
*
46685 TGTATC-GATACATAGTAAAATGTATCGATACA
1 TGTATCAG-TACATAGGAAAATGTATCGATACA
46717 TTATGCCCAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
32 1 0.04
33 26 0.96
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.32
Consensus pattern (33 bp):
TGTATCAGTACATAGGAAAATGTATCGATACAA
Found at i:47756 original size:152 final size:150
Alignment explanation
Indices: 47519--47823 Score: 402
Period size: 152 Copynumber: 2.0 Consensus size: 150
47509 ATATTATCAC
* *
47519 TTAATTCATATTAAATCAGTTTTAAAAAATTCATTCATTTTTCATTTTTTTCCTTGAAATTTTTC
1 TTAATTCATATTAAATCAGTTTTAAAAAATTCATTCATTTTTCATTTTTTTCCTTGAAATTATTA
* *
47584 TGTTTCCGAAATACAGAGTTTTCTACTCCGTAAATGTTTTCGGGA-AGATTTTTCTTGGTTTTTA
66 TGTTTCCGAAATACAAAGTTTTCTACTCCGTAAATGTTTTCGGGAGA-ATTTTTCTTAGTTTTTA
*
47648 ATTTTAAAAATTCATCAAATA
130 ATTTTAAAAATTCATAAAATA
* * *
47669 TTAATTTATATTAAATCATTTTTTAAAAATTCATTCA-TTTTCATTCATTGTTTCCTTGAAATTC
1 TTAATTCATATTAAATCAGTTTTAAAAAATTCATTCATTTTTCATT--TT-TTTCCTTGAAATT-
* ** * *
47733 CATTAT-TTT-TGAAATGTAAAGTTTTCTACTTCGTAAATGTTTTTGGGAGAATTTTTCTTAGTT
62 -ATTATGTTTCCGAAATACAAAGTTTTCTACTCCGTAAATGTTTTCGGGAGAATTTTTCTTAGTT
*
47796 TTTAATTTTTAAAATTCATAAAATA
126 TTTAATTTTAAAAATTCATAAAATA
47821 TTA
1 TTA
47824 TTATTTAATT
Statistics
Matches: 135, Mismatches: 14, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
149 8 0.06
150 34 0.25
151 2 0.01
152 84 0.62
153 4 0.03
154 3 0.02
ACGTcount: A:0.31, C:0.11, G:0.09, T:0.50
Consensus pattern (150 bp):
TTAATTCATATTAAATCAGTTTTAAAAAATTCATTCATTTTTCATTTTTTTCCTTGAAATTATTA
TGTTTCCGAAATACAAAGTTTTCTACTCCGTAAATGTTTTCGGGAGAATTTTTCTTAGTTTTTAA
TTTTAAAAATTCATAAAATA
Found at i:47854 original size:152 final size:154
Alignment explanation
Indices: 47600--48009 Score: 399
Period size: 159 Copynumber: 2.6 Consensus size: 154
47590 CGAAATACAG
* * * * *
47600 AGTTTTCTACTCCGTAAATGTTTTCGGGA-AGATTTTTCTTGGTTTTTAATTTTAAAAATTCATC
1 AGTTTTCTACTTCGTAAATGTTTTTGGGAGA-ATTTTTCTTAGTTTTTAATTTTTAAAATTCATA
* * ***
47664 AAATATTAATTTATATTAAATCAT-TT-TTTAAAAATTCATTCATTTTC-A-TTCATTGTTTCCT
65 AAATATT-A-TTAT-TTAATTCATATTAATTAATTTTTCATTCATTTTCAATTTCATTGTTTCCT
* * *
47725 TGAAATTCCATTATTTTTGAAATGT-AA
127 TAAAATTCCATTATTTCTGAAATATGAA
47752 AGTTTTCTACTTCGTAAATGTTTTTGGGAGAATTTTTCTTAGTTTTTAATTTTTAAAATTCATAA
1 AGTTTTCTACTTCGTAAATGTTTTTGGGAGAATTTTTCTTAGTTTTTAATTTTTAAAATTCATAA
* * *
47817 AATATTATTATTTAATTCATATTAGATTAATTTTTCATTTATTTTCATGAGTTTTTTATTTTTTC
66 AATATTATTATTTAATTCATATTA-ATTAATTTTTCATTCATTTTCA--A---TTTCATTGTTTC
** *
47882 CTTAAAATTCTTTTGTTTCTGAAATATGAA
125 CTTAAAATTCCATTATTTCTGAAATATGAA
* * *
47912 A-TTTTCTAC-TCTGTAAATGTTTTTTGGG-GGATTTTTCTTAGTTTATAATTTTTAAAATTTAT
1 AGTTTTCTACTTC-GTAAATG-TTTTTGGGAGAATTTTTCTTAGTTTTTAATTTTTAAAATTCAT
* * * *
47974 GAAATATCATCATTTAATTCATAGTAAATT-ATTTTT
64 AAAATATTATTATTTAATTCATA-TTAATTAATTTTT
48010 GAAAAATTCA
Statistics
Matches: 217, Mismatches: 26, Indels: 24
0.81 0.10 0.09
Matches are distributed among these distances:
149 8 0.04
150 6 0.03
151 1 0.00
152 80 0.37
153 1 0.00
155 1 0.00
158 8 0.04
159 99 0.46
160 13 0.06
ACGTcount: A:0.30, C:0.09, G:0.09, T:0.52
Consensus pattern (154 bp):
AGTTTTCTACTTCGTAAATGTTTTTGGGAGAATTTTTCTTAGTTTTTAATTTTTAAAATTCATAA
AATATTATTATTTAATTCATATTAATTAATTTTTCATTCATTTTCAATTTCATTGTTTCCTTAAA
ATTCCATTATTTCTGAAATATGAA
Found at i:47928 original size:159 final size:162
Alignment explanation
Indices: 47719--48062 Score: 421
Period size: 159 Copynumber: 2.1 Consensus size: 162
47709 TCATTCATTG
* *
47719 TTTCCTTGAAATTCCATTATTTTTGAAATGTAAAGTTTTCTACTTCGTAAATG-TTTTTGGGAGA
1 TTTCCTTGAAATTCCATTATTTCTGAAATATAAAGTTTTCTACTTCGTAAATGTTTTTTGGG-GA
* * * * *
47783 ATTTTTCTTAGTTTTTAATTTTTAAAATTCATAAAATATTATTATTTAATTCATATTAGATTA-A
65 ATTTTTCTTAGTTTATAATTTTTAAAATTCATAAAATATCATCATTTAATTCATAGTAAATTATA
*
47847 TTT-TTCATTTATTTTCATGAGTTTTTTA-TTT
130 TTTATTCATTTATTTTCATGAGTTTTTCATTTT
* ** *
47878 TTTCCTTAAAATTCTTTTGTTTCTGAAATATGAAA-TTTTCTAC-TCTGTAAATGTTTTTTGGGG
1 TTTCCTTGAAATTCCATTATTTCTGAAATAT-AAAGTTTTCTACTTC-GTAAATGTTTTTTGGGG
* * *
47941 GATTTTTCTTAGTTTATAATTTTTAAAATTTATGAAATATCATCATTTAATTCATAGTAAATTAT
64 AATTTTTCTTAGTTTATAATTTTTAAAATTCATAAAATATCATCATTTAATTCATAGTAAATTAT
*
48006 TTTTGAAAAATTCATTTATTTTCATGAGTTTTTCATTTT
129 ATTT-----ATTCATTTATTTTCATGAGTTTTTCATTTT
48045 TTTCCTTGAAATGTCCAT
1 TTTCCTTGAAAT-TCCAT
48063 GTTTTCAAAA
Statistics
Matches: 154, Mismatches: 19, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
158 2 0.01
159 97 0.63
160 14 0.09
166 24 0.16
167 14 0.09
168 3 0.02
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (162 bp):
TTTCCTTGAAATTCCATTATTTCTGAAATATAAAGTTTTCTACTTCGTAAATGTTTTTTGGGGAA
TTTTTCTTAGTTTATAATTTTTAAAATTCATAAAATATCATCATTTAATTCATAGTAAATTATAT
TTATTCATTTATTTTCATGAGTTTTTCATTTT
Found at i:49761 original size:152 final size:152
Alignment explanation
Indices: 49596--49873 Score: 466
Period size: 152 Copynumber: 1.8 Consensus size: 152
49586 TTTTTTCACA
49596 AAATAAAAATTATTATCCTAATTTTTCAAGATTTCTAATATTCCTATGGTTTTCCATAGGGGTAT
1 AAATAAAAATTATTATCCTAATTTTTCAAGATTTCTAATATTCCTATGGTTTTCCATAGGGGTAT
* * * *
49661 AAAAATTTTCAAAACTTTTCGTATCTTTTTGGTTCTCCATTAAGGTACGAAATAAATTTTTCAAA
66 AAAAATCTTCAAAACTTTTCATATCTTTTCGATTCTCCATTAAGGTACGAAATAAATTTTTCAAA
49726 AATTTAAAAATAAATTAAAATT
131 AATTTAAAAATAAATTAAAATT
* * *
49748 AAATAAAAATTATTATCTTATTTTTTCAAGATTTTTAATATTCCTATGGTTTTCCATAGGGGTAT
1 AAATAAAAATTATTATCCTAATTTTTCAAGATTTCTAATATTCCTATGGTTTTCCATAGGGGTAT
* * *
49813 AGAAATCTTCAAAACTTTTCATATCTTTTCGATTCTCCATTAAGGTATGAAATAAGTTTTT
66 AAAAATCTTCAAAACTTTTCATATCTTTTCGATTCTCCATTAAGGTACGAAATAAATTTTT
49874 TGAAGTTTAC
Statistics
Matches: 116, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
152 116 1.00
ACGTcount: A:0.36, C:0.12, G:0.09, T:0.43
Consensus pattern (152 bp):
AAATAAAAATTATTATCCTAATTTTTCAAGATTTCTAATATTCCTATGGTTTTCCATAGGGGTAT
AAAAATCTTCAAAACTTTTCATATCTTTTCGATTCTCCATTAAGGTACGAAATAAATTTTTCAAA
AATTTAAAAATAAATTAAAATT
Found at i:50248 original size:155 final size:154
Alignment explanation
Indices: 50089--50503 Score: 411
Period size: 154 Copynumber: 2.7 Consensus size: 154
50079 GCTGAGAGTT
* * ** ** *
50089 GGTATTTATGATAGGTTCATTCCATCTATAATTTTTTTAAGCCGTTTAAGTTTATCAAGATACTT
1 GGTATTTAGGATAGGTTCATCCCATCTATAATCCTTTTAAGCCGTTTAAGGGTATC-AGACACTT
* * * * * * * *
50154 TTAAGTCGAAGGGATCCC-TAGGGGTATTTTTATTATTTTTCCAAAATTGAGTCTTAGGTTTTCA
65 CTAAGTCGAAGGGATCCCTTAAGGGCATTTTCATAATTTTT-CAAAATCGAGTCCTAGGTTATCA
* *
50218 CCAGGTTTACTTTCATGCTGAAGGTG
129 CCAGGTTCACTTTCATGCCGAAGGTG
* * * *
50244 GGTATTTAGGATAGGTTCATCCCATCTATAATCCTTTTAAGTCTTTTAAGGGTATCGGGCACTTC
1 GGTATTTAGGATAGGTTCATCCCATCTATAATCCTTTTAAGCCGTTTAAGGGTATCAGACACTTC
* * * *
50309 TAAGTCGAATGTATCCCTTAAGGGCATTTTCATAATTTTTCATAATCGAGTCCTAGGTTATCATC
66 TAAGTCGAAGGGATCCCTTAAGGGCATTTTCATAATTTTTCAAAATCGAGTCCTAGGTTATCACC
* * *
50374 GGGTTCGCTTTTATGCCGAAGGTG
131 AGGTTCACTTTCATGCCGAAGGTG
* ** * * * *
50398 GGTATTTAGGATAGGTTGATCCCATCTACCATCCTTTTTTAAGTCC-CTTAGGGGTATCGGTCAC
1 GGTATTTAGGATAGGTTCATCCCATCTATAATCC--TTTTAAG-CCGTTTAAGGGTATCAGACAC
* * * * *
50462 TTCTAAGTTGAAGGTATCCCCTAAGGTCATTTTCGTAATTTT
63 TTCTAAGTCGAAGGGATCCCTTAAGGGCATTTTCATAATTTT
50504 AGAATCGAAT
Statistics
Matches: 216, Mismatches: 40, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
154 90 0.42
155 66 0.31
156 59 0.27
157 1 0.00
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.40
Consensus pattern (154 bp):
GGTATTTAGGATAGGTTCATCCCATCTATAATCCTTTTAAGCCGTTTAAGGGTATCAGACACTTC
TAAGTCGAAGGGATCCCTTAAGGGCATTTTCATAATTTTTCAAAATCGAGTCCTAGGTTATCACC
AGGTTCACTTTCATGCCGAAGGTG
Found at i:50411 original size:154 final size:154
Alignment explanation
Indices: 49994--50525 Score: 489
Period size: 155 Copynumber: 3.4 Consensus size: 154
49984 GGTGCCAGGT
* * * * * * * *
49994 ACTTCTATGTCGAAAGTATCCCCTATGAGTATTTTCATAATTTTTCTAGAACCGAGTCTTAAGTT
1 ACTTCTAAGTCGAAGGTATCCCCTAAGGGCATTTTCATAATTTTTC-AAAATCGAGTCTTAGGTT
* * * * * * * **
50059 GTCATTGGGTTCGTTTTTGTGCTG-AGAGTTGGTATTTATGATAGGTTCATTCCATCTATAATTT
65 ATCATCGGGTTCGCTTTTATGCTGAAG-GTGGGTATTTAGGATAGGTTCATCCCATCTATAATCC
** * *
50123 TTTTAAG-CCGTTTAAGTTTATCAAGAT
129 TTTTAAGTCC-TTTAAGGGTATC-GGAC
* * * * * * *
50150 ACTTTTAAGTCGAAGGGAT-CCCTAGGGGTATTTTTATTATTTTTCCAAAATTGAGTCTTAGGTT
1 ACTTCTAAGTCGAAGGTATCCCCTAAGGGCATTTTCATAATTTTT-CAAAATCGAGTCTTAGGTT
* * * ** *
50214 TTCACCAGGTTTACTTTCATGCTGAAGGTGGGTATTTAGGATAGGTTCATCCCATCTATAATCCT
65 ATCATCGGGTTCGCTTTTATGCTGAAGGTGGGTATTTAGGATAGGTTCATCCCATCTATAATCCT
* *
50279 TTTAAGTCTTTTAAGGGTATCGGGC
130 TTTAAGTCCTTTAAGGGTATCGGAC
* * * *
50304 ACTTCTAAGTCGAATGTATCCCTTAAGGGCATTTTCATAATTTTTCATAATCGAGTCCTAGGTTA
1 ACTTCTAAGTCGAAGGTATCCCCTAAGGGCATTTTCATAATTTTTCAAAATCGAGTCTTAGGTTA
* * **
50369 TCATCGGGTTCGCTTTTATGCCGAAGGTGGGTATTTAGGATAGGTTGATCCCATCTACCATCCTT
66 TCATCGGGTTCGCTTTTATGCTGAAGGTGGGTATTTAGGATAGGTTCATCCCATCTATAATCC--
* * *
50434 TTTTAAGTCCCTTAGGGGTATCGGTC
129 TTTTAAGTCCTTTAAGGGTATCGGAC
* * * * * *
50460 ACTTCTAAGTTGAAGGTATCCCCTAAGGTCATTTTCGTAA-TTTT-AGAATCGAATCTTAGGTCA
1 ACTTCTAAGTCGAAGGTATCCCCTAAGGGCATTTTCATAATTTTTCAAAATCGAGTCTTAGGTTA
50523 TCA
66 TCA
50526 CTCTTACACC
Statistics
Matches: 304, Mismatches: 66, Indels: 14
0.79 0.17 0.04
Matches are distributed among these distances:
154 105 0.35
155 123 0.40
156 76 0.25
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.40
Consensus pattern (154 bp):
ACTTCTAAGTCGAAGGTATCCCCTAAGGGCATTTTCATAATTTTTCAAAATCGAGTCTTAGGTTA
TCATCGGGTTCGCTTTTATGCTGAAGGTGGGTATTTAGGATAGGTTCATCCCATCTATAATCCTT
TTAAGTCCTTTAAGGGTATCGGAC
Found at i:51502 original size:154 final size:149
Alignment explanation
Indices: 51300--51728 Score: 422
Period size: 150 Copynumber: 2.8 Consensus size: 149
51290 TTCTAAAACC
* * * * * *
51300 GAGTCCTAAGTTGTCA-TCGGGTCCGCTTTATGCCGAGGGTGGGTATTTAGGATAGGTTTATTCC
1 GAGTCCTAGGTTGTCACT-GGGTCCGTTTTATGCTGAAGGTGGGTATTTAGGATAGGTTCATCCC
** * * *
51364 ATCTATAAT-CTTTTTAAGTCCTTTAAGTTTA-CTGG-ATACGTT-TAAGTCGAAGGTATCCCT-
65 ATCTATAATCCTTTTTAAGTCCTTTAAGGGTATCAGGCAT---TTCAAAGTCAAAGGTATCCCTA
51424 AGGGGCATTTTTGTAATATTTTTAGAAT
127 AGGGGCATTTTTG-AA-A-TTTT--AAT
* * * * *
51452 CGAGTCTTAGGTTGTCACTGGGTCTGGTTTTATGCTGAAGGTGGGCATTTAGGATAGGCTCATGC
1 -GAGTCCTAGGTTGTCACTGGGTC-CGTTTTATGCTGAAGGTGGGTATTTAGGATAGGTTCATCC
* * * *
51517 CATCTATAATCCTTTGTATGTCCTTTAGGGGTATCAGGCATTTCAAAGTCAAAGGTATCTCTAAG
64 CATCTATAATCCTTTTTAAGTCCTTTAAGGGTATCAGGCATTTCAAAGTCAAAGGTATCCCTAAG
* *
51582 GGGCTTTTTTGCAATTTTAAT
129 GGGCATTTTTGAAATTTTAAT
* * * *
51603 GAGTCCTAGGTTGTTACTGGGTCCGTTTCTATGCTGAAGGTGAGTGTTTAGGATATGTTCATCCC
1 GAGTCCTAGGTTGTCACTGGGTCCGTTT-TATGCTGAAGGTGGGTATTTAGGATAGGTTCATCCC
* * * *
51668 ATCTATAATCCTTTTTAAG-CCTTTTAAGGGTATCAGGCACTTCTAAGTCGAATGTATCCCT
65 ATCTATAATCCTTTTTAAGTCC-TTTAAGGGTATCAGGCATTTCAAAGTCAAAGGTATCCCT
51729 TAAAGGCATT
Statistics
Matches: 229, Mismatches: 38, Indels: 21
0.80 0.13 0.07
Matches are distributed among these distances:
149 6 0.03
150 101 0.44
151 3 0.01
153 23 0.10
154 46 0.20
155 33 0.14
156 15 0.07
157 2 0.01
ACGTcount: A:0.22, C:0.16, G:0.24, T:0.38
Consensus pattern (149 bp):
GAGTCCTAGGTTGTCACTGGGTCCGTTTTATGCTGAAGGTGGGTATTTAGGATAGGTTCATCCCA
TCTATAATCCTTTTTAAGTCCTTTAAGGGTATCAGGCATTTCAAAGTCAAAGGTATCCCTAAGGG
GCATTTTTGAAATTTTAAT
Found at i:52915 original size:155 final size:155
Alignment explanation
Indices: 52608--53244 Score: 509
Period size: 155 Copynumber: 4.1 Consensus size: 155
52598 TTTCTTTCAT
* * ** * * * * * **
52608 TTTTTAAGCCCTTTAGGGGCGCCGGG-TACTTGTATGTCGAAGGTATCCCCTATGAGTATTTTCA
1 TTTTTAAGTCCTTTAAGGGTACCGGGATACTTCTAAGTCGAAGGTAT-CCCTAGGGGCATTTTTG
* * * * ** *
52672 TAAT-TCTTCTAGAACCGAGTCCTAAGTTGTCA-TCGGGTCCGCTT-TATGCCGAGGGTGGGTAT
65 TAATAT-TTTTA-AATCGAGTCCTAGGTTGTCACT-GGGTCCGTTTCTATGCTAAAGGTGGGTAT
* * *
52734 TTAGGATGGGTTTATTCCATCTATAAT-C
127 TTAGGATAGGTTCATCCCATCTATAATCC
**
52762 TTTTTAAGTCCTTTAAGTTTACCGGGATACGTT-TAAGTCGAAGGTATCCCTAGGGGCATTTTTG
1 TTTTTAAGTCCTTTAAGGGTACCGGGATAC-TTCTAAGTCGAAGGTATCCCTAGGGGCATTTTTG
* *
52826 TAATATTTTTAGAATCGAGTCTTAGGTTGTCACTGGGTCTGGTTT-TATGCTAAAGGTGGGTATT
65 TAATATTTTTA-AATCGAGTCCTAGGTTGTCACTGGGTC-CGTTTCTATGCTAAAGGTGGGTATT
* *
52890 TAGGACAGGCTCATCCCATCTATAATCC
128 TAGGATAGGTTCATCCCATCTATAATCC
* * * * * *
52918 TTTTTAAGTCCTTTAGGGGTACCAGGCAT--TTCAAAGTCAAAGGTATCTCTAAGGGGCTTTTTT
1 TTTTTAAGTCCTTTAAGGGTACC-GGGATACTTCTAAGTCGAAGGTATCCCT-AGGGGCATTTTT
* * *
52981 GT-A-A-TTTT-AAT-GAGTCCTAGGTTGTTACTGGGTCCGTTTCTATGCTGAAGGTGAGTATTT
64 GTAATATTTTTAAATCGAGTCCTAGGTTGTCACTGGGTCCGTTTCTATGCTAAAGGTGGGTATTT
*
53041 AGGATACGTTCATCCCATCTATAATCC
129 AGGATAGGTTCATCCCATCTATAATCC
* * * * * **
53068 TTTTTAAGTCTTTTAAGGGTATCAGGA-ACTTCTAAGTCGAATGTATCCCTTAAGGGCATTTTCA
1 TTTTTAAGTCCTTTAAGGGTACCGGGATACTTCTAAGTCGAAGGTATCCC-TAGGGGCATTTTTG
* * * ** ** *
53132 TAAT-TTTTCATAATCGAGTCCTAGGTTATCA-TCGGGTTCGCTTT-TATGCCGAAGGTGTTTAC
65 TAATATTTTTA-AATCGAGTCCTAGGTTGTCACT-GGGTCCG-TTTCTATGCTAAAGGTGGGTAT
* * **
53194 TTATGATAGGTTCATCCTATCTACCATCC
127 TTAGGATAGGTTCATCCCATCTATAATCC
*
53223 TTTTTTAAGTCCTTTAGGGGTA
1 -TTTTTAAGTCCTTTAAGGGTA
53245 TTTGTCACTT
Statistics
Matches: 391, Mismatches: 70, Indels: 42
0.78 0.14 0.08
Matches are distributed among these distances:
149 6 0.02
150 109 0.28
151 5 0.01
152 3 0.01
153 4 0.01
154 70 0.18
155 132 0.34
156 58 0.15
157 4 0.01
ACGTcount: A:0.22, C:0.17, G:0.22, T:0.38
Consensus pattern (155 bp):
TTTTTAAGTCCTTTAAGGGTACCGGGATACTTCTAAGTCGAAGGTATCCCTAGGGGCATTTTTGT
AATATTTTTAAATCGAGTCCTAGGTTGTCACTGGGTCCGTTTCTATGCTAAAGGTGGGTATTTAG
GATAGGTTCATCCCATCTATAATCC
Found at i:53054 original size:150 final size:151
Alignment explanation
Indices: 52687--53244 Score: 538
Period size: 155 Copynumber: 3.6 Consensus size: 151
52677 CTTCTAGAAC
* * * * * *
52687 CGAGTCCTAAGTTGTCATCGGGTCCGCTTTATGCCGAGGGTGGGTATTTAGGATGGGTTTATTCC
1 CGAGTCCTAGGTTGTCATCGGGTCCGTTTTATGCCGAAGGTGGGTATTTAGGATAGGTTCATCCC
** * *
52752 ATCTATAAT-CTTTTTAAGTCCTTTAAGTTTACCGGGATACGTT-TAAGTCGAAGGTATCCCT-A
66 ATCTATAATCCTTTTTAAGTCCTTTAAGGGTACCAGGA-A-TTTCTAAGTCGAAGGTATCCCTAA
52814 GGGGCATTTTTGTAATATTTTTAGAAT
129 GGGGCATTTTTGT-A-ATTTTT--AAT
* * ** * *
52841 CGAGTCTTAGGTTGTCA-CTGGGTCTGGTTTTATGCTAAAGGTGGGTATTTAGGACAGGCTCATC
1 CGAGTCCTAGGTTGTCATC-GGGTC-CGTTTTATGCCGAAGGTGGGTATTTAGGATAGGTTCATC
* * * * *
52905 CCATCTATAATCCTTTTTAAGTCCTTTAGGGGTACCAGGCATTTCAAAGTCAAAGGTATCTCTAA
64 CCATCTATAATCCTTTTTAAGTCCTTTAAGGGTACCAGGAATTTCTAAGTCGAAGGTATCCCTAA
*
52970 GGGGCTTTTTTGTAA-TTTTAAT
129 GGGGCATTTTTGTAATTTTTAAT
* * * *
52992 -GAGTCCTAGGTTGTTA-CTGGGTCCGTTTCTATGCTGAAGGTGAGTATTTAGGATACGTTCATC
1 CGAGTCCTAGGTTGTCATC-GGGTCCGTTT-TATGCCGAAGGTGGGTATTTAGGATAGGTTCATC
* * * *
53055 CCATCTATAATCCTTTTTAAGTCTTTTAAGGGTATCAGGAACTTCTAAGTCGAATGTATCCCTTA
64 CCATCTATAATCCTTTTTAAGTCCTTTAAGGGTACCAGGAATTTCTAAGTCGAAGGTATCCC-TA
**
53120 A-GGGCATTTTCATAATTTTTCATAAT
128 AGGGGCATTTTTGTAA-TTTT--TAAT
* * ** * *
53146 CGAGTCCTAGGTTATCATCGGGTTCGCTTTTATGCCGAAGGTGTTTACTTATGATAGGTTCATCC
1 CGAGTCCTAGGTTGTCATCGGGTCCG-TTTTATGCCGAAGGTGGGTATTTAGGATAGGTTCATCC
* ** *
53211 TATCTACCATCCTTTTTTAAGTCCTTTAGGGGTA
65 CATCTATAATCC-TTTTTAAGTCCTTTAAGGGTA
53245 TTTGTCACTT
Statistics
Matches: 333, Mismatches: 56, Indels: 28
0.80 0.13 0.07
Matches are distributed among these distances:
149 4 0.01
150 114 0.34
151 6 0.02
152 3 0.01
153 5 0.02
154 27 0.08
155 115 0.35
156 59 0.18
ACGTcount: A:0.23, C:0.17, G:0.22, T:0.38
Consensus pattern (151 bp):
CGAGTCCTAGGTTGTCATCGGGTCCGTTTTATGCCGAAGGTGGGTATTTAGGATAGGTTCATCCC
ATCTATAATCCTTTTTAAGTCCTTTAAGGGTACCAGGAATTTCTAAGTCGAAGGTATCCCTAAGG
GGCATTTTTGTAATTTTTAAT
Found at i:53179 original size:305 final size:305
Alignment explanation
Indices: 52688--53244 Score: 687
Period size: 305 Copynumber: 1.8 Consensus size: 305
52678 TTCTAGAACC
* * ** * *
52688 GAGTCCTAAGTTGTCATCGGGTCCGCTTTATGCCGAGGGTGGGTATTTAGGATGGGTTTATTCCA
1 GAGTCCTAAGTTGTCATCGGGTCCGCTTTATGCCGAAGGTGAGTATTTAGGATACGTTCATCCCA
** * *
52753 TCTATAATCTTTTTAAGTCCTTTAAGTTTACCGGGATACGTTTAAGTCGAAGGTATCCCTAGGGG
66 TCTATAATCTTTTTAAGTCCTTTAAGGGTACCAGGATACGTTTAAGTCGAAGGTATCCCTAAGGG
** * * * * *
52818 CATTTTTGTAATATTTTTAGAATCGAGTCTTAGGTTGTCACTGGGTCTGGTTTTATGCTAAAGGT
131 CATTTTCATAATATTTTCAGAATCGAGTCCTAGGTTATCACTGGGTCTGCTTTTATGCCAAAGGT
* *
52883 GGGTATTTAGGACAGGCTCATCCCATCTATAATCC-TTTTTAAGTCCTTTAGGGGTACCAGGCAT
196 GGGTACTTAGGACAGGCTCATCCCATCTACAATCCTTTTTTAAGTCCTTTAGGGGTACCAGGCAT
52947 TTCAAAGTCAAAGGTATCTCTAAGGGGCTTTTTTGTAATTTTAAT
261 TTCAAAGTCAAAGGTATCTCTAAGGGGCTTTTTTGTAATTTTAAT
* * * *
52992 GAGTCCTAGGTTGTTA-CTGGGTCCGTTTCTATGCTGAAGGTGAGTATTTAGGATACGTTCATCC
1 GAGTCCTAAGTTGTCATC-GGGTCCGCTT-TATGCCGAAGGTGAGTATTTAGGATACGTTCATCC
* * *
53056 CATCTATAATCCTTTTTAAGTCTTTTAAGGGTATCAGGA-AC-TTCTAAGTCGAATGTATCCCTT
64 CATCTATAAT-CTTTTTAAGTCCTTTAAGGGTACCAGGATACGTT-TAAGTCGAAGGTATCCC-T
*
53119 AAGGGCATTTTCATAAT-TTTTCATAATCGAGTCCTAGGTTATCA-TCGGGT-TCGCTTTTATGC
126 AAGGGCATTTTCATAATATTTTCAGAATCGAGTCCTAGGTTATCACT-GGGTCT-GCTTTTATGC
* ** * * * * *
53181 CGAAGGTGTTTACTTATGATAGGTTCATCCTATCTACCATCCTTTTTTAAGTCCTTTAGGGGTA
189 CAAAGGTGGGTACTTAGGACAGGCTCATCCCATCTACAATCCTTTTTTAAGTCCTTTAGGGGTA
53245 TTTGTCACTT
Statistics
Matches: 210, Mismatches: 35, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
303 1 0.00
304 27 0.13
305 123 0.59
306 59 0.28
ACGTcount: A:0.23, C:0.17, G:0.22, T:0.38
Consensus pattern (305 bp):
GAGTCCTAAGTTGTCATCGGGTCCGCTTTATGCCGAAGGTGAGTATTTAGGATACGTTCATCCCA
TCTATAATCTTTTTAAGTCCTTTAAGGGTACCAGGATACGTTTAAGTCGAAGGTATCCCTAAGGG
CATTTTCATAATATTTTCAGAATCGAGTCCTAGGTTATCACTGGGTCTGCTTTTATGCCAAAGGT
GGGTACTTAGGACAGGCTCATCCCATCTACAATCCTTTTTTAAGTCCTTTAGGGGTACCAGGCAT
TTCAAAGTCAAAGGTATCTCTAAGGGGCTTTTTTGTAATTTTAAT
Found at i:54520 original size:150 final size:149
Alignment explanation
Indices: 54094--54684 Score: 530
Period size: 155 Copynumber: 3.9 Consensus size: 149
54084 TTCTAGAACC
* * * * * * * * *
54094 GAGTCCTAAGTTGTCA-TCGGGTCCGCTTTATACCGAGGGTGGGTAATTAGGATAGGTTTATTCC
1 GAGTCCTAGGTTGTCACT-GGGTTCGTTTTATGCTGAAGGTGGGTATTTAGGATAGGTTCATCCC
* ** * **
54158 AACTATAAT-CTTTTTAAGTCTTTTAAGTTTACCAGGATACGTT-TAAGTCGAAGGTATCCCT-A
65 ATCTATAATCCTTTTTAAGTCTTTTAAGGGTATC-GGGCAC-TTCTAAGTCGAAGGTATCCCTAA
*
54220 GGGGCATTTTTATAATATTTTTAGAACT
128 GGGGC-TTTTT-T-ATAATTTT--AA-T
* * *
54248 GAGTCTTAGGTTGTCACTGGGTTTGGTTTTATGCTGAAGGTGGGTATTTAGGATAGGCTCATCCC
1 GAGTCCTAGGTTGTCACTGGG-TTCGTTTTATGCTGAAGGTGGGTATTTAGGATAGGTTCATCCC
* * ** * * *
54313 ATCTATAATCCTTTTTAAGTCCTTTAGGGGTATCAAGCA-TTGCAAAGTCAAAGGTATCTCTAAG
65 ATCTATAATCCTTTTTAAGTCTTTTAAGGGTATCGGGCACTT-CTAAGTCGAAGGTATCCCTAAG
*
54377 GGGCTTTTTTGTAATTTTAAT
129 GGGCTTTTTTATAATTTTAAT
* * *
54398 GAGTCCTAGGTTGTTACTGGGTCCGTTTCTATGCTGAAGGTGAGTATTTAGGATAGGTTCATCCC
1 GAGTCCTAGGTTGTCACTGGGTTCGTTT-TATGCTGAAGGTGGGTATTTAGGATAGGTTCATCCC
*
54463 ATCTATAATCCTTTTTAAGTCTTTTAAGGGTATCGGGCACTTCTAAGTCGAATGTATCCCTTAA-
65 ATCTATAATCCTTTTTAAGTCTTTTAAGGGTATCGGGCACTTCTAAGTCGAAGGTATCCC-TAAG
* *
54527 GGGCATTTTCATAATTTTTCATAAT
129 GGGCTTTTTTATAA--TTT--TAAT
* * * *
54552 CGAGTCCTAGGTTATCA-TCAGGTTCGCTTTTATGCCGAAGGTGGGTATCTAGGATAGGTTCATC
1 -GAGTCCTAGGTTGTCACT-GGGTTCG-TTTTATGCTGAAGGTGGGTATTTAGGATAGGTTCATC
* ** * * * * *
54616 CTATCTACCATCCTTTTTTAAGCCTTTTAGGGGTATCGGTCATTTCTAAGTTGAAGGTATCCCCT
63 CCATCTATAATCC-TTTTTAAGTCTTTTAAGGGTATCGGGCACTTCTAAGTCGAAGGTAT-CCCT
54681 AAGG
126 AAGG
54685 TCATTTTCGT
Statistics
Matches: 358, Mismatches: 60, Indels: 35
0.79 0.13 0.08
Matches are distributed among these distances:
149 5 0.01
150 114 0.32
151 7 0.02
152 3 0.01
153 8 0.02
154 23 0.06
155 123 0.34
156 71 0.20
157 4 0.01
ACGTcount: A:0.24, C:0.16, G:0.22, T:0.38
Consensus pattern (149 bp):
GAGTCCTAGGTTGTCACTGGGTTCGTTTTATGCTGAAGGTGGGTATTTAGGATAGGTTCATCCCA
TCTATAATCCTTTTTAAGTCTTTTAAGGGTATCGGGCACTTCTAAGTCGAAGGTATCCCTAAGGG
GCTTTTTTATAATTTTAAT
Found at i:55946 original size:150 final size:150
Alignment explanation
Indices: 55497--55967 Score: 434
Period size: 150 Copynumber: 3.1 Consensus size: 150
55487 ATTCTAAAAC
* * * * * *
55497 CGAGTCCTAAGTTGTCA-TCAGGTCCGCTTTATGCCGAGGGTGGGTATTTAGGATAGGTTTATTC
1 CGAGTCCTAGGTTGTCACT-GGGTCCGTTTTATGCTGAAGGTGGGTATTTAGGATAGGTTTATCC
** * *
55561 CATCTATAAT-CTTTTTAAGTCCTTTAAGTTTA-CTGGATACGTT-TAAGTCGAAGGTATCCCTA
65 CATCTATAATCCTTTTTAAGTCCTTTAAGGGTATCAGG-CAC-TTCTAAGTCGAAGGTATCCCTA
* *
55623 GGGGCATTTTTGTAATATTTTTAGAAT
128 AGGGCA--TTT-TAATAATTTTA-AAT
* * * * * *
55650 CGAGTCTTAGGTTGTCACTGGGTCTGGTTTTATGCTGAAGGTGGGCATTTAGGATAGGCTCATGC
1 CGAGTCCTAGGTTGTCACTGGGTC-CGTTTTATGCTGAAGGTGGGTATTTAGGATAGGTTTATCC
* * * * * * *
55715 CATCTATAATCCTTTGTATGTCCTTTAGGGGTATCAGGCATTTCAAAGTCAAAGGTATCTCTAAG
65 CATCTATAATCCTTTTTAAGTCCTTTAAGGGTATCAGGCACTTCTAAGTCGAAGGTATCCCTAA-
* ***
55780 GGGCTTTTTTGCAATTTT-AAT
129 GGGCATTTTAATAATTTTAAAT
* * * *
55801 -GAGTCCTAGGTTGTTACTGGGTCCGTTTCTATGCTGAAGGTGAGTGTTTAGGATATGTTTATCC
1 CGAGTCCTAGGTTGTCACTGGGTCCGTTT-TATGCTGAAGGTGGGTATTTAGGATAGGTTTATCC
*
55865 CATCTATAATCCTTTTTAAG-CCTTTTAAGGGTATCAGGCACTTCTAAGTCGAATGTATCCCTTA
65 CATCTATAATCCTTTTTAAGTCC-TTTAAGGGTATCAGGCACTTCTAAGTCGAAGGTATCCC-TA
* *
55929 AAGGCATTTTCATAATTTTTCATAAT
128 AGGGCATTTTAATAA-TTTT-A-AAT
55955 CGAGTCCTAGGTT
1 CGAGTCCTAGGTT
55968 ATCATCAGGT
Statistics
Matches: 253, Mismatches: 51, Indels: 26
0.77 0.15 0.08
Matches are distributed among these distances:
149 6 0.02
150 108 0.43
151 10 0.04
153 25 0.10
154 51 0.20
155 46 0.18
156 7 0.03
ACGTcount: A:0.23, C:0.16, G:0.23, T:0.38
Consensus pattern (150 bp):
CGAGTCCTAGGTTGTCACTGGGTCCGTTTTATGCTGAAGGTGGGTATTTAGGATAGGTTTATCCC
ATCTATAATCCTTTTTAAGTCCTTTAAGGGTATCAGGCACTTCTAAGTCGAAGGTATCCCTAAGG
GCATTTTAATAATTTTAAAT
Found at i:57152 original size:155 final size:154
Alignment explanation
Indices: 56886--57441 Score: 537
Period size: 155 Copynumber: 3.6 Consensus size: 154
56876 TCTAGAACCA
* * * * * * * *
56886 AGTCCTAAGTTGTCA-TCGGGTC-CGCTTTATGCCGAGGGCGGGTATTTAGAATCA-GTTTATTC
1 AGTCCTAGGTTGTCACT-GGGTCTCGTTTTATGCTGAAGGTGGGTATTTAGGAT-AGGTTCATCC
* ** * * *
56948 CATCTATAAT-CTTTTTAAGTCCTTTAAGTTTACCGGGATACGTT-TAAGTCGAAGGTATCCCTA
64 CATCTATAATCCTTTTTAAGTCCTTTAGGGGTACCAGG-CAC-TTCAAAGTCGAAGGTATCCCTA
57011 GGGGCATTTTTGTAATATTTTTAGAATCG
127 GGGGCATTTTTGTAATATTTTTA-AATCG
* * * *
57040 AGTCTTAGGTTGTCACTGGGTCTTGTTTTATGCTGAAGGTGGGCATTTAGGATAGGCTCATCCCA
1 AGTCCTAGGTTGTCACTGGGTCTCGTTTTATGCTGAAGGTGGGTATTTAGGATAGGTTCATCCCA
* * **
57105 TCTATAATCCTTTTTAAGTCCTTTAGGGGTACCAGGCATTTCAAAGTCAAAGGTATTTCTAAGGG
66 TCTATAATCCTTTTTAAGTCCTTTAGGGGTACCAGGCACTTCAAAGTCGAAGGTATCCCT-AGGG
**
57170 GTTTTTTTGT-A-A-TTTT-AAT-G
130 GCATTTTTGTAATATTTTTAAATCG
* * * *
57190 AGTCCTAGGTTGTTACTAGGTC-CGTTTCTATGCTGAAGGTGAGTATTTAGGATACGTTCATCCC
1 AGTCCTAGGTTGTCACTGGGTCTCGTTT-TATGCTGAAGGTGGGTATTTAGGATAGGTTCATCCC
* * * * * *
57254 ATCTATAATCCTTTTTAAGTCTTTTAAGGGTATCAGGCACTTCTAAGTCGAATGTATCCCTTAAG
65 ATCTATAATCCTTTTTAAGTCCTTTAGGGGTACCAGGCACTTCAAAGTCGAAGGTATCCC-TAGG
* *
57319 GGCATTTTCGTAAT-TTTTCATAATCG
129 GGCATTTTTGTAATATTTTTA-AATCG
* * *
57345 AGTCCTAGGTTGTCA-TCGGGT-TCGCTTTTATGCCGAAGGTGGTTATTTATGATAGGTTCATCC
1 AGTCCTAGGTTGTCACT-GGGTCTCG-TTTTATGCTGAAGGTGGGTATTTAGGATAGGTTCATCC
**
57408 CATCTACCATCCTTTTTTAAGTCCTTTAGGGGTA
64 CATCTATAATCC-TTTTTAAGTCCTTTAGGGGTA
57442 TTTGTCACTT
Statistics
Matches: 327, Mismatches: 57, Indels: 34
0.78 0.14 0.08
Matches are distributed among these distances:
149 4 0.01
150 113 0.35
151 5 0.02
152 3 0.01
153 4 0.01
154 26 0.08
155 115 0.35
156 57 0.17
ACGTcount: A:0.22, C:0.17, G:0.22, T:0.39
Consensus pattern (154 bp):
AGTCCTAGGTTGTCACTGGGTCTCGTTTTATGCTGAAGGTGGGTATTTAGGATAGGTTCATCCCA
TCTATAATCCTTTTTAAGTCCTTTAGGGGTACCAGGCACTTCAAAGTCGAAGGTATCCCTAGGGG
CATTTTTGTAATATTTTTAAATCG
Found at i:59497 original size:155 final size:154
Alignment explanation
Indices: 59231--59786 Score: 544
Period size: 155 Copynumber: 3.6 Consensus size: 154
59221 TCTAGAACGA
* * * * * * * *
59231 AGTCCTAAGTTGTCA-TCGGGTC-CGCTTTATGCCGAGGGTGGGTATTTAGAATCGGTTTATTCC
1 AGTCCTAGGTTGTCACT-GGGTCTCGTTTTATGCTGAAGGTGGGTATTTAGGATAGGTTCATCCC
* ** * * *
59294 ATCTATAAT-CTTTTTAAGTCCTTTAAGTTTACCGGGATACGTT-TAAGTCGAAGGTATCCCTAG
65 ATCTATAATCCTTTTTAAGTCCTTTAGGGGTACCAGG-CAC-TTCAAAGTCGAAGGTATCCCTAG
59357 GGGCATTTTTGTAATATTTTTAGAATCG
128 GGGCATTTTTGTAATATTTTTA-AATCG
* * * * *
59385 AGTCTTAGGTTGTCACTGGGTCTTGTTTTATGCTGAAGGTGGGCATTGAGGATAGGCTCATCCCA
1 AGTCCTAGGTTGTCACTGGGTCTCGTTTTATGCTGAAGGTGGGTATTTAGGATAGGTTCATCCCA
* * *
59450 TCTATAATCCTTTTTAAGTCCTTTAGGGGTACCAGGCATTTCAAAGTCAAAGGTATCTCTAAGGG
66 TCTATAATCCTTTTTAAGTCCTTTAGGGGTACCAGGCACTTCAAAGTCGAAGGTATCCCT-AGGG
**
59515 GTTTTTTTGT-A-A-TTTT-AAT-G
130 GCATTTTTGTAATATTTTTAAATCG
* * * *
59535 AGTCCTAGGTTGTTACTAGGTC-CGTTTCTATGCTGAAGGTGAGTATTTAGGATACGTTCATCCC
1 AGTCCTAGGTTGTCACTGGGTCTCGTTT-TATGCTGAAGGTGGGTATTTAGGATAGGTTCATCCC
* * * * * *
59599 ATCTATAATCCTTTTTAAGTCTTTTAAGGGTATCAGGCACTTCTAAGTCGAATGTATCCCTTAAG
65 ATCTATAATCCTTTTTAAGTCCTTTAGGGGTACCAGGCACTTCAAAGTCGAAGGTATCCC-TAGG
* *
59664 GGCATTTTCGTAAT-TTTTCATAATCG
129 GGCATTTTTGTAATATTTTTA-AATCG
* * * *
59690 AGTCCTAGGTTGTCA-TCGGGT-TCGCTTTTACGCCGAAGGTGGTTATTTATGATAGGTTCATCC
1 AGTCCTAGGTTGTCACT-GGGTCTCG-TTTTATGCTGAAGGTGGGTATTTAGGATAGGTTCATCC
**
59753 CATCTACCATCCTTTTTTAAGTCCTTTAGGGGTA
64 CATCTATAATCC-TTTTTAAGTCCTTTAGGGGTA
59787 TTTGTCACTT
Statistics
Matches: 327, Mismatches: 58, Indels: 32
0.78 0.14 0.08
Matches are distributed among these distances:
149 4 0.01
150 113 0.35
151 5 0.02
152 3 0.01
153 4 0.01
154 25 0.08
155 116 0.35
156 57 0.17
ACGTcount: A:0.22, C:0.17, G:0.22, T:0.38
Consensus pattern (154 bp):
AGTCCTAGGTTGTCACTGGGTCTCGTTTTATGCTGAAGGTGGGTATTTAGGATAGGTTCATCCCA
TCTATAATCCTTTTTAAGTCCTTTAGGGGTACCAGGCACTTCAAAGTCGAAGGTATCCCTAGGGG
CATTTTTGTAATATTTTTAAATCG
Found at i:59587 original size:150 final size:151
Alignment explanation
Indices: 59150--59853 Score: 535
Period size: 155 Copynumber: 4.6 Consensus size: 151
59140 TTTCTTTCAT
* ** * * * * * * * * * *
59150 TTTTTAAGCCCTTTAGGGGCGCCGGGTACTTCTATGTCGAAGGTATCCCCTATGAGTATTTTCAT
1 TTTTTAAGTCCTTTAGGGGTACCAGGCACTTCAAAGTCAAAGGTATCCCTTAAGGGCATTTTCGT
* * * * * *
59215 AATTCTTCTAGAACGAAGTCCTAAGTTGTCA-TCGGGTCCGCTTTATGCCGAGGGTGGGTATTTA
66 AATT-TTATA-ATCG-AGTCCTAGGTTGTCACT-GGGTCCGTTTTATGCTGAAGGT-GGTATTTA
* * * *
59279 GAATCGGTTTATTCCATCTATAAT-C
126 GGATAGGTTCATCCCATCTATAATCC
* ** * * * * * *
59304 TTTTTAAGTCCTTTAAGTTTACCGGGATACGTT-TAAGTCGAAGGTATCCC-TAGGGGCATTTTT
1 TTTTTAAGTCCTTTAGGGGTACCAGG-CAC-TTCAAAGTCAAAGGTATCCCTTAAGGGCATTTTC
* * * *
59367 GTAATATTTTTAGAATCGAGTCTTAGGTTGTCACTGGGTCTTGTTTTATGCTGAAGGTGGGCATT
64 GT-A-A-TTTTATAATCGAGTCCTAGGTTGTCACTGGGTC-CGTTTTATGCTGAAGGT-GGTATT
* *
59432 GAGGATAGGCTCATCCCATCTATAATCC
124 TAGGATAGGTTCATCCCATCTATAATCC
* * ** *
59460 TTTTTAAGTCCTTTAGGGGTACCAGGCATTTCAAAGTCAAAGGTATCTC-TAAGGGGTTTTTTTG
1 TTTTTAAGTCCTTTAGGGGTACCAGGCACTTCAAAGTCAAAGGTATCCCTTAA-GGGCATTTTCG
* *
59524 TAA-TTT-TAAT-GAGTCCTAGGTTGTTACTAGGTCCGTTTCTATGCTGAAGGTGAGTATTTAGG
65 TAATTTTATAATCGAGTCCTAGGTTGTCACTGGGTCCGTTT-TATGCTGAAGGTG-GTATTTAGG
*
59586 ATACGTTCATCCCATCTATAATCC
128 ATAGGTTCATCCCATCTATAATCC
* * * * * *
59610 TTTTTAAGTCTTTTAAGGGTATCAGGCACTTCTAAGTCGAATGTATCCCTTAAGGGCATTTTCGT
1 TTTTTAAGTCCTTTAGGGGTACCAGGCACTTCAAAGTCAAAGGTATCCCTTAAGGGCATTTTCGT
* * *
59675 AATTTTTCATAATCGAGTCCTAGGTTGTCA-TCGGGTTCGCTTTTACGCCGAAGGTGGTTATTTA
66 AA-TTTT-ATAATCGAGTCCTAGGTTGTCACT-GGGTCCG-TTTTATGCTGAAGGTGG-TATTTA
* **
59739 TGATAGGTTCATCCCATCTACCATCC
126 GGATAGGTTCATCCCATCTATAATCC
*** * * * * *
59765 TTTTTTAAGTCCTTTAGGGGTATTTGTCACTTCTAAGTTAAAGGTATCCCCTAAGGTCATTTTCG
1 -TTTTTAAGTCCTTTAGGGGTACCAGGCACTTCAAAGTCAAAGGTATCCCTTAAGGGCATTTTCG
* * *
59830 TAATTTTAGAATCGAATCTTAGGT
65 TAATTTTATAATCGAGTCCTAGGT
59854 CATCACTCTT
Statistics
Matches: 446, Mismatches: 82, Indels: 44
0.78 0.14 0.08
Matches are distributed among these distances:
149 5 0.01
150 113 0.25
151 6 0.01
152 6 0.01
154 71 0.16
155 144 0.32
156 99 0.22
157 2 0.00
ACGTcount: A:0.23, C:0.18, G:0.21, T:0.38
Consensus pattern (151 bp):
TTTTTAAGTCCTTTAGGGGTACCAGGCACTTCAAAGTCAAAGGTATCCCTTAAGGGCATTTTCGT
AATTTTATAATCGAGTCCTAGGTTGTCACTGGGTCCGTTTTATGCTGAAGGTGGTATTTAGGATA
GGTTCATCCCATCTATAATCC
Found at i:60901 original size:155 final size:154
Alignment explanation
Indices: 60635--61190 Score: 553
Period size: 155 Copynumber: 3.6 Consensus size: 154
60625 TCTAGAACGA
* * * * * * * *
60635 AGTCCTAAGTTGTCA-TCGGGTC-CGCTTTATGCCGAGGGTGGGTATTTAGAATCGGTTTATTCC
1 AGTCCTAGGTTGTCACT-GGGTCTCGTTTTATGCTGAAGGTGGGTATTTAGGATAGGTTCATCCC
* ** * * *
60698 ATCTATAAT-CTTTTTAAGTCCTTTAAGTTTACCGGGATACGTT-TAAGTCGAAGGTATCCCTAG
65 ATCTATAATCCTTTTTAAGTCCTTTAGGGGTACCAGG-CAC-TTCAAAGTCGAAGGTATCCCTAG
60761 GGGCATTTTTGTAATATTTTTAGAATCG
128 GGGCATTTTTGTAATATTTTTA-AATCG
* * * * *
60789 AGTCTTAGGTTGTCACTGGGTCTTGTTTTATGCTGAAGGTGGGCATTGAGGATAGGCTCATCCCA
1 AGTCCTAGGTTGTCACTGGGTCTCGTTTTATGCTGAAGGTGGGTATTTAGGATAGGTTCATCCCA
* * *
60854 TCTATAATCCTTTTTAAGTCCTTTAGGGGTACCAGGCATTTCAAAGTCAAAGGTATCTCTAAGGG
66 TCTATAATCCTTTTTAAGTCCTTTAGGGGTACCAGGCACTTCAAAGTCGAAGGTATCCCT-AGGG
**
60919 GTTTTTTTGT-A-A-TTTT-AAT-G
130 GCATTTTTGTAATATTTTTAAATCG
* * * *
60939 AGTCCTAGGTTGTTACTAGGTC-CGTTTCTATGCTGAAGGTGAGTATTTAGGATACGTTCATCCC
1 AGTCCTAGGTTGTCACTGGGTCTCGTTT-TATGCTGAAGGTGGGTATTTAGGATAGGTTCATCCC
* * * * * *
61003 ATCTATAATCCTTTTTAAGTCTTTTAAGGGTATCAGGCACTTCTAAGTCGAATGTATCCCTTAAG
65 ATCTATAATCCTTTTTAAGTCCTTTAGGGGTACCAGGCACTTCAAAGTCGAAGGTATCCC-TAGG
*
61068 GGCATTTTTGTAAT-TTTTCATAATCG
129 GGCATTTTTGTAATATTTTTA-AATCG
* * * *
61094 AGTCCTAGGTTGTCA-TCGGGT-TCGCTTTTACGCCGAAGGTGGTTATTTATGATAGGTTCATCC
1 AGTCCTAGGTTGTCACT-GGGTCTCG-TTTTATGCTGAAGGTGGGTATTTAGGATAGGTTCATCC
**
61157 CATCTACCATCCTTTTTTAAGTCCTTTAGGGGTA
64 CATCTATAATCC-TTTTTAAGTCCTTTAGGGGTA
61191 TTTGTCACTT
Statistics
Matches: 328, Mismatches: 57, Indels: 32
0.79 0.14 0.08
Matches are distributed among these distances:
149 4 0.01
150 114 0.35
151 5 0.02
152 3 0.01
153 4 0.01
154 25 0.08
155 116 0.35
156 57 0.17
ACGTcount: A:0.22, C:0.17, G:0.22, T:0.38
Consensus pattern (154 bp):
AGTCCTAGGTTGTCACTGGGTCTCGTTTTATGCTGAAGGTGGGTATTTAGGATAGGTTCATCCCA
TCTATAATCCTTTTTAAGTCCTTTAGGGGTACCAGGCACTTCAAAGTCGAAGGTATCCCTAGGGG
CATTTTTGTAATATTTTTAAATCG
Found at i:60991 original size:150 final size:151
Alignment explanation
Indices: 60635--61257 Score: 544
Period size: 155 Copynumber: 4.1 Consensus size: 151
60625 TCTAGAACGA
* * * * * * * *
60635 AGTCCTAAGTTGTCA-TCGGGTCCGCTTTATGCCGAGGGTGGGTATTTAGAATCGGTTTATTCCA
1 AGTCCTAGGTTGTCACT-GGGTCCGTTTTATGCTGAAGGT-GGTATTTAGGATAGGTTCATCCCA
* ** * * * * *
60699 TCTATAAT-CTTTTTAAGTCCTTTAAGTTTACCGGGATACGTT-TAAGTCGAAGGTATCCC-TAG
64 TCTATAATCCTTTTTAAGTCCTTTAGGGGTACCAGG-CAC-TTCAAAGTCAAAGGTATCCCTTAA
*
60761 GGGCATTTTTGTAATATTTTTAGAATCG
127 GGGCATTTTTGT-A-A-TTTTATAATCG
* * * * *
60789 AGTCTTAGGTTGTCACTGGGTCTTGTTTTATGCTGAAGGTGGGCATTGAGGATAGGCTCATCCCA
1 AGTCCTAGGTTGTCACTGGGTC-CGTTTTATGCTGAAGGT-GGTATTTAGGATAGGTTCATCCCA
* *
60854 TCTATAATCCTTTTTAAGTCCTTTAGGGGTACCAGGCATTTCAAAGTCAAAGGTATCTC-TAAGG
64 TCTATAATCCTTTTTAAGTCCTTTAGGGGTACCAGGCACTTCAAAGTCAAAGGTATCCCTTAA-G
**
60918 GGTTTTTTTGTAA-TTT-TAAT-G
128 GGCATTTTTGTAATTTTATAATCG
* * *
60939 AGTCCTAGGTTGTTACTAGGTCCGTTTCTATGCTGAAGGTGAGTATTTAGGATACGTTCATCCCA
1 AGTCCTAGGTTGTCACTGGGTCCGTTT-TATGCTGAAGGTG-GTATTTAGGATAGGTTCATCCCA
* * * * * *
61004 TCTATAATCCTTTTTAAGTCTTTTAAGGGTATCAGGCACTTCTAAGTCGAATGTATCCCTTAAGG
64 TCTATAATCCTTTTTAAGTCCTTTAGGGGTACCAGGCACTTCAAAGTCAAAGGTATCCCTTAAGG
61069 GCATTTTTGTAATTTTTCATAATCG
129 GCATTTTTGTAA-TTTT-ATAATCG
* * * *
61094 AGTCCTAGGTTGTCA-TCGGGTTCGCTTTTACGCCGAAGGTGGTTATTTATGATAGGTTCATCCC
1 AGTCCTAGGTTGTCACT-GGGTCCG-TTTTATGCTGAAGGTGG-TATTTAGGATAGGTTCATCCC
** *** * * * *
61158 ATCTACCATCCTTTTTTAAGTCCTTTAGGGGTATTTGTCACTTCTAAGTTAAAGGTATCCCCTAA
63 ATCTATAATCC-TTTTTAAGTCCTTTAGGGGTACCAGGCACTTCAAAGTCAAAGGTATCCCTTAA
* * *
61223 GGTCATTTTCGTAATTTTAGAATCG
127 GGGCATTTTTGTAATTTTATAATCG
* *
61248 AATCTTAGGT
1 AGTCCTAGGT
61258 CATCACTCTT
Statistics
Matches: 385, Mismatches: 67, Indels: 34
0.79 0.14 0.07
Matches are distributed among these distances:
149 5 0.01
150 114 0.30
151 6 0.02
152 6 0.02
154 41 0.11
155 121 0.31
156 92 0.24
ACGTcount: A:0.23, C:0.17, G:0.22, T:0.39
Consensus pattern (151 bp):
AGTCCTAGGTTGTCACTGGGTCCGTTTTATGCTGAAGGTGGTATTTAGGATAGGTTCATCCCATC
TATAATCCTTTTTAAGTCCTTTAGGGGTACCAGGCACTTCAAAGTCAAAGGTATCCCTTAAGGGC
ATTTTTGTAATTTTATAATCG
Found at i:62305 original size:155 final size:154
Alignment explanation
Indices: 62039--62594 Score: 544
Period size: 155 Copynumber: 3.6 Consensus size: 154
62029 TCTAGAACGA
* * * * * * * *
62039 AGTCCTAAGTTGTCA-TCGGGTC-CGCTTTATGCCGAGGGTGGGTATTTAGAATCGGTTTATTCC
1 AGTCCTAGGTTGTCACT-GGGTCTCGTTTTATGCTGAAGGTGGGTATTTAGGATAGGTTCATCCC
* ** * * *
62102 ATCTATAAT-CTTTTTAAGTCCTTTAAGTTTACCGGGATACGTT-TAAGTCGAAGGTATCCCTAG
65 ATCTATAATCCTTTTTAAGTCCTTTAGGGGTACCAGG-CAC-TTCAAAGTCGAAGGTATCCCTAG
62165 GGGCATTTTTGTAATATTTTTAGAATCG
128 GGGCATTTTTGTAATATTTTTA-AATCG
* * * * *
62193 AGTCTTAGGTTGTCACTGGGTCTTGTTTTATGCTGAAGGTGGGCATTGAGGATAGGCTCATCCCA
1 AGTCCTAGGTTGTCACTGGGTCTCGTTTTATGCTGAAGGTGGGTATTTAGGATAGGTTCATCCCA
* * *
62258 TCTATAATCCTTTTTAAGTCCTTTAGGGGTACCAGGCATTTCAAAGTCAAAGGTATCTCTAAGGG
66 TCTATAATCCTTTTTAAGTCCTTTAGGGGTACCAGGCACTTCAAAGTCGAAGGTATCCCT-AGGG
**
62323 GTTTTTTTGT-A-A-TTTT-AAT-G
130 GCATTTTTGTAATATTTTTAAATCG
* * * *
62343 AGTCCTAGGTTGTTACTAGGTC-CGTTTCTATGCTGAAGGTGAGTATTTAGGATACGTTCATCCC
1 AGTCCTAGGTTGTCACTGGGTCTCGTTT-TATGCTGAAGGTGGGTATTTAGGATAGGTTCATCCC
* * * * * *
62407 ATCTATAATCCTTTTTAAGTCTTTTAAGGGTATCAGGCACTTCTAAGTCGAATGTATCCCTTAAG
65 ATCTATAATCCTTTTTAAGTCCTTTAGGGGTACCAGGCACTTCAAAGTCGAAGGTATCCC-TAGG
* *
62472 GGCATTTTCGTAAT-TTTTCATAATCG
129 GGCATTTTTGTAATATTTTTA-AATCG
* * * *
62498 AGTCCTAGGTTGTCA-TCGGGT-TCGCTTTTACGCCGAAGGTGGTTATTTATGATAGGTTCATCC
1 AGTCCTAGGTTGTCACT-GGGTCTCG-TTTTATGCTGAAGGTGGGTATTTAGGATAGGTTCATCC
**
62561 CATCTACCATCCTTTTTTAAGTCCTTTAGGGGTA
64 CATCTATAATCC-TTTTTAAGTCCTTTAGGGGTA
62595 TTTGTCACTT
Statistics
Matches: 327, Mismatches: 58, Indels: 32
0.78 0.14 0.08
Matches are distributed among these distances:
149 4 0.01
150 113 0.35
151 5 0.02
152 3 0.01
153 4 0.01
154 25 0.08
155 116 0.35
156 57 0.17
ACGTcount: A:0.22, C:0.17, G:0.22, T:0.38
Consensus pattern (154 bp):
AGTCCTAGGTTGTCACTGGGTCTCGTTTTATGCTGAAGGTGGGTATTTAGGATAGGTTCATCCCA
TCTATAATCCTTTTTAAGTCCTTTAGGGGTACCAGGCACTTCAAAGTCGAAGGTATCCCTAGGGG
CATTTTTGTAATATTTTTAAATCG
Found at i:62395 original size:150 final size:151
Alignment explanation
Indices: 61958--62661 Score: 535
Period size: 155 Copynumber: 4.6 Consensus size: 151
61948 TTTCTTTCAT
* ** * * * * * * * * * *
61958 TTTTTAAGCCCTTTAGGGGCGCCGGGTACTTCTATGTCGAAGGTATCCCCTATGAGTATTTTCAT
1 TTTTTAAGTCCTTTAGGGGTACCAGGCACTTCAAAGTCAAAGGTATCCCTTAAGGGCATTTTCGT
* * * * * *
62023 AATTCTTCTAGAACGAAGTCCTAAGTTGTCA-TCGGGTCCGCTTTATGCCGAGGGTGGGTATTTA
66 AATT-TTATA-ATCG-AGTCCTAGGTTGTCACT-GGGTCCGTTTTATGCTGAAGGT-GGTATTTA
* * * *
62087 GAATCGGTTTATTCCATCTATAAT-C
126 GGATAGGTTCATCCCATCTATAATCC
* ** * * * * * *
62112 TTTTTAAGTCCTTTAAGTTTACCGGGATACGTT-TAAGTCGAAGGTATCCC-TAGGGGCATTTTT
1 TTTTTAAGTCCTTTAGGGGTACCAGG-CAC-TTCAAAGTCAAAGGTATCCCTTAAGGGCATTTTC
* * * *
62175 GTAATATTTTTAGAATCGAGTCTTAGGTTGTCACTGGGTCTTGTTTTATGCTGAAGGTGGGCATT
64 GT-A-A-TTTTATAATCGAGTCCTAGGTTGTCACTGGGTC-CGTTTTATGCTGAAGGT-GGTATT
* *
62240 GAGGATAGGCTCATCCCATCTATAATCC
124 TAGGATAGGTTCATCCCATCTATAATCC
* * ** *
62268 TTTTTAAGTCCTTTAGGGGTACCAGGCATTTCAAAGTCAAAGGTATCTC-TAAGGGGTTTTTTTG
1 TTTTTAAGTCCTTTAGGGGTACCAGGCACTTCAAAGTCAAAGGTATCCCTTAA-GGGCATTTTCG
* *
62332 TAA-TTT-TAAT-GAGTCCTAGGTTGTTACTAGGTCCGTTTCTATGCTGAAGGTGAGTATTTAGG
65 TAATTTTATAATCGAGTCCTAGGTTGTCACTGGGTCCGTTT-TATGCTGAAGGTG-GTATTTAGG
*
62394 ATACGTTCATCCCATCTATAATCC
128 ATAGGTTCATCCCATCTATAATCC
* * * * * *
62418 TTTTTAAGTCTTTTAAGGGTATCAGGCACTTCTAAGTCGAATGTATCCCTTAAGGGCATTTTCGT
1 TTTTTAAGTCCTTTAGGGGTACCAGGCACTTCAAAGTCAAAGGTATCCCTTAAGGGCATTTTCGT
* * *
62483 AATTTTTCATAATCGAGTCCTAGGTTGTCA-TCGGGTTCGCTTTTACGCCGAAGGTGGTTATTTA
66 AA-TTTT-ATAATCGAGTCCTAGGTTGTCACT-GGGTCCG-TTTTATGCTGAAGGTGG-TATTTA
* **
62547 TGATAGGTTCATCCCATCTACCATCC
126 GGATAGGTTCATCCCATCTATAATCC
*** * * * * *
62573 TTTTTTAAGTCCTTTAGGGGTATTTGTCACTTCTAAGTTAAAGGTATCCCCTAAGGTCATTTTCG
1 -TTTTTAAGTCCTTTAGGGGTACCAGGCACTTCAAAGTCAAAGGTATCCCTTAAGGGCATTTTCG
* * *
62638 TAATTTTAGAATCGAATCTTAGGT
65 TAATTTTATAATCGAGTCCTAGGT
62662 CATCACTCTT
Statistics
Matches: 446, Mismatches: 82, Indels: 44
0.78 0.14 0.08
Matches are distributed among these distances:
149 5 0.01
150 113 0.25
151 6 0.01
152 6 0.01
154 71 0.16
155 144 0.32
156 99 0.22
157 2 0.00
ACGTcount: A:0.23, C:0.18, G:0.21, T:0.38
Consensus pattern (151 bp):
TTTTTAAGTCCTTTAGGGGTACCAGGCACTTCAAAGTCAAAGGTATCCCTTAAGGGCATTTTCGT
AATTTTATAATCGAGTCCTAGGTTGTCACTGGGTCCGTTTTATGCTGAAGGTGGTATTTAGGATA
GGTTCATCCCATCTATAATCC
Found at i:63884 original size:150 final size:150
Alignment explanation
Indices: 63550--63893 Score: 379
Period size: 150 Copynumber: 2.3 Consensus size: 150
63540 GGATACGTTT
*
63550 AAGTCGAAGGTATCCCTAGGGGCATTTTTGTAATATTTTTAGAATCGAGTCTTAGGTTGTCACTG
1 AAGTCGAAGGTATCCCTAGGGGCATTTTTGT-A-A-TTTT--AATCGAGTCCTAGGTTGTCACTG
* *
63615 GGTCTAGTTTTATGCTGAAGGTGGGCATTTAGGATAGGCTCATCCCATCTATAATCCTTTTTAAG
61 GGTCTAGTTTTATGCTGAAGGTGAGCATTTAGGATAAGCTCATCCCATCTATAATCCTTTTTAAG
* *
63680 TCCTTTAGGGGTATCAGGCATTTCA
126 TCCTTTAGGAGTATCAGACATTTCA
* * * *
63705 AAGTCAAAGGTATCTCTTAGGGGCTTTTTTGTAATTTTAAT-GAGTCCTAGGTTGTTACTGGGTC
1 AAGTCGAAGGTATC-CCTAGGGGCATTTTTGTAATTTTAATCGAGTCCTAGGTTGTCACTGGGTC
* * * * * * * * *
63769 -CGTTTCTATGCTGAAGGTTAGTATTTTGGATAAGTTCATCCTATCTATAATCGTTTTTATGTCT
65 TAGTTT-TATGCTGAAGGTGAGCATTTAGGATAAGCTCATCCCATCTATAATCCTTTTTAAGTCC
*
63833 TTTAGGAGTATCAGACACTTT-T
129 TTTAGGAGTATCAGACA-TTTCA
* * **
63855 ACGTTGAAGGTACTCCCTAAAGGCATTTTTGTAATTTTA
1 AAGTCGAAGGTA-TCCCTAGGGGCATTTTTGTAATTTTA
63894 GAATCAAGTC
Statistics
Matches: 159, Mismatches: 26, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
149 4 0.03
150 113 0.71
151 8 0.05
153 4 0.03
154 1 0.01
155 14 0.09
156 15 0.09
ACGTcount: A:0.24, C:0.15, G:0.22, T:0.40
Consensus pattern (150 bp):
AAGTCGAAGGTATCCCTAGGGGCATTTTTGTAATTTTAATCGAGTCCTAGGTTGTCACTGGGTCT
AGTTTTATGCTGAAGGTGAGCATTTAGGATAAGCTCATCCCATCTATAATCCTTTTTAAGTCCTT
TAGGAGTATCAGACATTTCA
Found at i:67626 original size:58 final size:58
Alignment explanation
Indices: 67493--67632 Score: 160
Period size: 58 Copynumber: 2.4 Consensus size: 58
67483 ATTATTTTGT
* * * * *
67493 AATTTCATGCATTTTAGCA-CTATTTTAGTCATTTTCCATGAATTAGGGACCATTATGC
1 AATTTCATGCATTTTAGGATC-ATTTTAATCATTTCCCATGAATTAGGGACAATTACGC
*
67551 AAATTCATGCATTTTAGGATCATTTTAATCATTTCCCAT-AATTTAGGG-CTAATTACGC
1 AATTTCATGCATTTTAGGATCATTTTAATCATTTCCCATGAA-TTAGGGAC-AATTACGC
* *
67609 TATTTCATGCATTTTAGGGTCATT
1 AATTTCATGCATTTTAGGATCATT
67633 CAGAAAATTT
Statistics
Matches: 70, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
57 3 0.04
58 66 0.94
59 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.42
Consensus pattern (58 bp):
AATTTCATGCATTTTAGGATCATTTTAATCATTTCCCATGAATTAGGGACAATTACGC
Found at i:68065 original size:76 final size:76
Alignment explanation
Indices: 67820--68411 Score: 310
Period size: 76 Copynumber: 7.7 Consensus size: 76
67810 ATGTCCCGCA
** ** * * *
67820 TTCGTGTTGAAACATGTTCGTTAAGGTGGTTTCA-ATAATAGTACCTTAAAA-TCAAGTCT-AGG
1 TTCGTGTCAAAACATGTTCGTTAAGGTTATTT-AGGTAATAGTACCTTAAAACT-GAGACTAAGG
* * *
67882 TTCATTTAAGAATC
64 -TCATGTAGGAACC
* * * * * * * *
67896 TTCGTGTCAAAACATG-TCTATTAAAGATGTTTAGGTAAAATTACCTTAAAACTAAGTCTATTAA
1 TTCGTGTCAAAACATGTTC-GTTAAGGTTATTTAGGTAATAGTACCTTAAAACTGAG---ACTAA
*
67960 GGTCATGTGGGAACC
62 GGTCATGTAGGAACC
* * *
67975 TTTGTGTCTAAACATGTTCGTTAAGGTTATTTTGGTAATAGTACCTTAAAACTGAGACTAAGGTC
1 TTCGTGTCAAAACATGTTCGTTAAGGTTATTTAGGTAATAGTACCTTAAAACTGAGACTAAGGTC
68040 ATGTAGGAACC
66 ATGTAGGAACC
* * * * ** * *
68051 TTCATGTCAAAACAT-ATCTGTTAAGGTTATTTCGATAATAGTACCTTAAAACCAAGTCTAAGCT
1 TTCGTGTCAAAACATGTTC-GTTAAGGTTATTTAGGTAATAGTACCTTAAAACTGAGACTAAGGT
*
68115 CATGT-GGTAATCG
65 CATGTAGG-AA-CC
* * * * * * *
68128 TT-GTGTCAAAACATATCCATTAAGTTTATTTAGGTAAAAGTACCTTAAAACCGAGTCCACCAAG
1 TTCGTGTCAAAACATGTTCGTTAAGGTTATTTAGGTAATAGTACCTTAAAACTGAG---ACTAAG
* *
68192 GTCATTTGGGAACC
63 GTCATGTAGGAACC
* * * * * * * *
68206 TTCATGTTAAAATATG-TCGTTAGGGTTATTT-TGTTATAATACCTTAAAACTGAGTCT-AGAGT
1 TTCGTGTCAAAACATGTTCGTTAAGGTTATTTAGGTAATAGTACCTTAAAACTGAGACTAAG-GT
68268 CATGT-GAGAACC
65 CATGTAG-GAACC
* * * * * * * * * * *
68280 TTCGTCTCAAAATATGTCTAG-TAGGGTCATTTGGGTAAAAGTACCTTAAAATTGAG-TTTAGAA
1 TTCGTGTCAAAACATGT-TCGTTAAGGTTATTTAGGTAATAGTACCTTAAAACTGAGACTAAG-G
* *
68343 TCATGGAAGAACC
64 TCATGTAGGAACC
** ** * ** * *
68356 TTCACGTTGAAATATGCCCATTAAGGTTATTTAGGTAATAATACCTTAAAACTGAG
1 TTCGTGTCAAAACATGTTCGTTAAGGTTATTTAGGTAATAGTACCTTAAAACTGAG
68412 CATATGATCA
Statistics
Matches: 394, Mismatches: 97, Indels: 50
0.73 0.18 0.09
Matches are distributed among these distances:
73 3 0.01
74 25 0.06
75 18 0.05
76 231 0.59
77 23 0.06
78 14 0.04
79 73 0.19
80 7 0.02
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34
Consensus pattern (76 bp):
TTCGTGTCAAAACATGTTCGTTAAGGTTATTTAGGTAATAGTACCTTAAAACTGAGACTAAGGTC
ATGTAGGAACC
Found at i:68173 original size:152 final size:150
Alignment explanation
Indices: 67937--68330 Score: 387
Period size: 153 Copynumber: 2.6 Consensus size: 150
67927 TAGGTAAAAT
* * * * *
67937 TACCTTAAAACTAAGTCTATTAAGGTCATGTGGGAACCTTTGTGTCTAAACATGTTCGTTAAGGT
1 TACCTTAAAACTAAGTC---TAA-GTCATGTGGGAACCGTTGTGTCAAAACATATCCATTAAGGT
* * * *
68002 TATTTTGGTAATAGTACCTTAAAACTGAG-ACTAAGGTCATGTAGGAACCTTCATGTCAAAACAT
62 TATTTAGGTAAAAGTACCTTAAAACCGAGCACCAAGGTCATGTAGGAACCTTCATGTCAAAACAT
*
68066 ATCTGTTAAGGTTATTTCGATAATAG
127 ATC-GTTAAGGTTATTTCG-TAATAA
* * * *
68092 TACCTTAAAACCAAGTCTAAGCTCATGTGGTAATCGTTGTGTCAAAACATATCCATTAAGTTTAT
1 TACCTTAAAACTAAGTCTAAG-TCATGTGGGAACCGTTGTGTCAAAACATATCCATTAAGGTTAT
* * * * *
68157 TTAGGTAAAAGTACCTTAAAACCGAGTCCACCAAGGTCATTTGGGAACCTTCATGTTAAAATATG
65 TTAGGTAAAAGTACCTTAAAACCGAG--CACCAAGGTCATGTAGGAACCTTCATGTCAAAACATA
* * *
68222 TCGTTAGGGTTATTTTGTTATAA
128 TCGTTAAGGTTATTTCGTAATAA
* * * * * * * * *
68245 TACCTTAAAACTGAGTCTAGAGTCATGTGAGAACC-TTCGTCTCAAAATATGTCTAGTAGGGTCA
1 TACCTTAAAACTAAGTCTA-AGTCATGTGGGAACCGTT-GTGTCAAAACATATCCATTAAGGTTA
*
68309 TTTGGGTAAAAGTACCTTAAAA
64 TTTAGGTAAAAGTACCTTAAAA
68331 TTGAGTTTAG
Statistics
Matches: 197, Mismatches: 36, Indels: 14
0.80 0.15 0.06
Matches are distributed among these distances:
151 1 0.01
152 63 0.32
153 70 0.36
154 15 0.08
155 48 0.24
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34
Consensus pattern (150 bp):
TACCTTAAAACTAAGTCTAAGTCATGTGGGAACCGTTGTGTCAAAACATATCCATTAAGGTTATT
TAGGTAAAAGTACCTTAAAACCGAGCACCAAGGTCATGTAGGAACCTTCATGTCAAAACATATCG
TTAAGGTTATTTCGTAATAA
Found at i:75770 original size:14 final size:14
Alignment explanation
Indices: 75751--75779 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
75741 CACTATTCAA
75751 CACTATTCATGTAT
1 CACTATTCATGTAT
75765 CACTATTCATGTAT
1 CACTATTCATGTAT
75779 C
1 C
75780 GATAAAATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.24, G:0.07, T:0.41
Consensus pattern (14 bp):
CACTATTCATGTAT
Found at i:75824 original size:13 final size:13
Alignment explanation
Indices: 75806--75831 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
75796 ATCACTATTC
75806 ATGTATCGATACA
1 ATGTATCGATACA
75819 ATGTATCGATACA
1 ATGTATCGATACA
75832 TTATGAATAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:81211 original size:32 final size:32
Alignment explanation
Indices: 81187--81251 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
81177 TATCGATTTT
81187 TCACTGTTCATCACTGTTCATGTATCGATACA
1 TCACTGTTCATCACTGTTCATGTATCGATACA
* *
81219 TCACTGTTCATTACTGTTCACGTATCGATACA
1 TCACTGTTCATCACTGTTCATGTATCGATACA
81251 T
1 T
81252 TGTGAATAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.25, C:0.25, G:0.12, T:0.38
Consensus pattern (32 bp):
TCACTGTTCATCACTGTTCATGTATCGATACA
Found at i:81270 original size:52 final size:52
Alignment explanation
Indices: 81208--81333 Score: 243
Period size: 52 Copynumber: 2.4 Consensus size: 52
81198 CACTGTTCAT
81208 GTATCGATACATCACTGTTCATTACTGTTCACGTATCGATACATTGTGAATA
1 GTATCGATACATCACTGTTCATTACTGTTCACGTATCGATACATTGTGAATA
*
81260 GTATCGATACATAACTGTTCATTACTGTTCACGTATCGATACATTGTGAATA
1 GTATCGATACATCACTGTTCATTACTGTTCACGTATCGATACATTGTGAATA
81312 GTATCGATACATCACTGTTCAT
1 GTATCGATACATCACTGTTCAT
81334 GTATCGATAA
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 72 1.00
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.37
Consensus pattern (52 bp):
GTATCGATACATCACTGTTCATTACTGTTCACGTATCGATACATTGTGAATA
Found at i:81352 original size:23 final size:22
Alignment explanation
Indices: 81312--81356 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 22
81302 ATTGTGAATA
*
81312 GTATCGATACATCACTGTTCAT
1 GTATCGATAAATCACTGTTCAT
81334 GTATCGATAAAATCACTGTTCAT
1 GTATCGAT-AAATCACTGTTCAT
81357 CACTATTCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (22 bp):
GTATCGATAAATCACTGTTCAT
Found at i:81383 original size:13 final size:13
Alignment explanation
Indices: 81365--81390 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
81355 ATCACTATTC
81365 ATGTATCGATACA
1 ATGTATCGATACA
81378 ATGTATCGATACA
1 ATGTATCGATACA
81391 TTATGAATAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:83512 original size:106 final size:104
Alignment explanation
Indices: 83309--83679 Score: 444
Period size: 106 Copynumber: 3.5 Consensus size: 104
83299 TATACCTAAG
* * * * * *
83309 GATAAAATTATAAAAATATTTTGGAACAAAAAGAAGATTTGAGTTTTTTATGAAGAACGGGGTTG
1 GATAAAATTATGAAAATATTTAGGAACAAAGAGAAAATTTGAGTTTTTTATGAAAAACGGGGTTA
*
83374 GAGTATCCCCTCAAAGTA-TAAGGGTTGGAGTTTCTCCAAA
66 GAGTATCCCCTCAAAGTAGTGA-GGTT-GAGTTTCTCCAAA
* *
83414 GATAAAATTATGAAAATGTTTAGGAACAAAGAGAAAATTTGAGTTTTTTTATGAAAAACGGAGTT
1 GATAAAATTATGAAAATATTTAGGAACAAAGAGAAAATTTGAG-TTTTTTATGAAAAACGGGGTT
* * *
83479 AGAATATCCCCTCAAAGTAGCGAGGTTAGAGTTTCTCC-AT
65 AGAGTATCCCCTCAAAGTAGTGAGGTT-GAGTTTCTCCAAA
* *
83519 GCATAAAATTATGAAAATATTTAGGAATAAAGA-AGAAATTTGAGTTTTTTAAATGAAAAATGGG
1 G-ATAAAATTATGAAAATATTTAGGAACAAAGAGA-AAATTTGAGTTTTTT--ATGAAAAACGGG
** * * *
83583 GTTAGAGTATCTTCTCAAAATAGTGGGGTTG-GTGTCTCCCTAAA
62 GTTAGAGTATCCCCTCAAAGTAGTGAGGTTGAGTTTCT-CC-AAA
*
83627 GATAAAATTATGAAAATATTTAGGAACAAAGAGGAAATTTGAGTTTTTTATGA
1 GATAAAATTATGAAAATATTTAGGAACAAAGAGAAAATTTGAGTTTTTTATGA
83680 TGAACAGGGT
Statistics
Matches: 229, Mismatches: 27, Indels: 20
0.83 0.10 0.07
Matches are distributed among these distances:
105 56 0.24
106 91 0.40
107 80 0.35
108 2 0.01
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.32
Consensus pattern (104 bp):
GATAAAATTATGAAAATATTTAGGAACAAAGAGAAAATTTGAGTTTTTTATGAAAAACGGGGTTA
GAGTATCCCCTCAAAGTAGTGAGGTTGAGTTTCTCCAAA
Found at i:86387 original size:14 final size:12
Alignment explanation
Indices: 86364--86402 Score: 51
Period size: 12 Copynumber: 3.1 Consensus size: 12
86354 TCTATATTTG
86364 TATTTATCTTTT
1 TATTTATCTTTT
*
86376 TATGTGTATCTTTA
1 TAT-T-TATCTTTT
86390 TATTTATCTTTT
1 TATTTATCTTTT
86402 T
1 T
86403 GTATTAATCT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
12 11 0.48
13 2 0.09
14 10 0.43
ACGTcount: A:0.18, C:0.08, G:0.05, T:0.69
Consensus pattern (12 bp):
TATTTATCTTTT
Found at i:86407 original size:14 final size:14
Alignment explanation
Indices: 86364--86418 Score: 51
Period size: 14 Copynumber: 4.1 Consensus size: 14
86354 TCTATATTTG
86364 TATTTATCTTTTTA
1 TATTTATCTTTTTA
* *
86378 TGTGTATC--TTTA
1 TATTTATCTTTTTA
*
86390 TATTTATCTTTTTG
1 TATTTATCTTTTTA
* *
86404 TATTAATCTTGTTA
1 TATTTATCTTTTTA
86418 T
1 T
86419 GTTTTCTTAA
Statistics
Matches: 31, Mismatches: 8, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
12 10 0.32
14 21 0.68
ACGTcount: A:0.20, C:0.07, G:0.07, T:0.65
Consensus pattern (14 bp):
TATTTATCTTTTTA
Found at i:90044 original size:13 final size:13
Alignment explanation
Indices: 90026--90051 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
90016 CAATTTTTTG
90026 TGTATCGATACAT
1 TGTATCGATACAT
90039 TGTATCGATACAT
1 TGTATCGATACAT
90052 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:90066 original size:32 final size:33
Alignment explanation
Indices: 90006--90069 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
89996 TACAAGCCAA
** *
90006 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
90039 TGTATCGATAC-ATACTTGGTGTATCGATACA
1 TGTATCGATACAATACTTGGTGTATCGATACA
90070 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATACAT
Found at i:92600 original size:13 final size:13
Alignment explanation
Indices: 92582--92619 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
92572 ATAATCCCCC
92582 TGTATCGATACAG
1 TGTATCGATACAG
*
92595 TGTATCGATACAT
1 TGTATCGATACAG
92608 TGTATCGATACA
1 TGTATCGATACA
92620 AAGAAAAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:94722 original size:15 final size:15
Alignment explanation
Indices: 94702--94732 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
94692 ATTTCGTTTG
*
94702 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
94717 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
94732 G
1 G
94733 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:96171 original size:13 final size:13
Alignment explanation
Indices: 96153--96178 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
96143 CAATTTTTTG
96153 TGTATCGATACAT
1 TGTATCGATACAT
96166 TGTATCGATACAT
1 TGTATCGATACAT
96179 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:96243 original size:21 final size:21
Alignment explanation
Indices: 96217--96292 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
96207 CTGCCAAGAA
*
96217 ATGTATCGATACATCTTTTTT
1 ATGTATCGATACATCTTTTTC
****
96238 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
96258 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
96279 ATGTATCGATACAT
1 ATGTATCGATACAT
96293 TGCAACATGT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.42
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:96263 original size:20 final size:20
Alignment explanation
Indices: 96238--96310 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
96228 CATCTTTTTT
96238 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
96258 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
96279 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
96299 ATGTATCGATAC
1 ATGTATCGATAC
96311 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:96274 original size:41 final size:41
Alignment explanation
Indices: 96217--96310 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
96207 CTGCCAAGAA
*
96217 ATGTATCGATACATCTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
96258 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
96299 ATGTATCGATAC
1 ATGTATCGATAC
96311 TTTGAATTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:98771 original size:13 final size:13
Alignment explanation
Indices: 98753--98791 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
98743 ATAATCACCC
*
98753 TGTATCGATACAG
1 TGTATCGATACAA
98766 TGTATCGATACAA
1 TGTATCGATACAA
98779 TGTATCGATACAA
1 TGTATCGATACAA
98792 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:98802 original size:20 final size:20
Alignment explanation
Indices: 98777--98815 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
98767 GTATCGATAC
98777 AATGTATCGATACAAAGAAA
1 AATGTATCGATACAAAGAAA
*
98797 AATGTATCGATACATAGAA
1 AATGTATCGATACAAAGAA
98816 TTTCCAGATG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.51, C:0.10, G:0.15, T:0.23
Consensus pattern (20 bp):
AATGTATCGATACAAAGAAA
Found at i:102732 original size:21 final size:21
Alignment explanation
Indices: 102703--102747 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
102693 AAGTTTTCAT
*
102703 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
102723 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
102745 TTT
1 TTT
102748 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:104978 original size:13 final size:13
Alignment explanation
Indices: 104960--104985 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
104950 CAATTTTTTG
104960 TGTATCGATACAT
1 TGTATCGATACAT
104973 TGTATCGATACAT
1 TGTATCGATACAT
104986 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:105050 original size:21 final size:21
Alignment explanation
Indices: 105024--105099 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
105014 CTGCCAAGAA
*
105024 ATGTATCGATACATCTTTTTT
1 ATGTATCGATACATCTTTTTC
****
105045 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
105065 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
105086 ATGTATCGATACAT
1 ATGTATCGATACAT
105100 TGCAACATGT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.42
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:105070 original size:20 final size:20
Alignment explanation
Indices: 105045--105117 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
105035 CATCTTTTTT
105045 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
105065 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
105086 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
105106 ATGTATCGATAC
1 ATGTATCGATAC
105118 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:105081 original size:41 final size:41
Alignment explanation
Indices: 105024--105117 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
105014 CTGCCAAGAA
*
105024 ATGTATCGATACATCTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
105065 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
105106 ATGTATCGATAC
1 ATGTATCGATAC
105118 TTTGAATTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:108773 original size:13 final size:13
Alignment explanation
Indices: 108755--108780 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
108745 CAATTTTTTG
108755 TGTATCGATACAT
1 TGTATCGATACAT
108768 TGTATCGATACAT
1 TGTATCGATACAT
108781 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:122888 original size:20 final size:20
Alignment explanation
Indices: 122844--122894 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
122834 AAAATTCCCA
122844 AATGTATCGATACAAAAATC
1 AATGTATCGATACAAAAATC
* *
122864 CATGTATCGATACATGAAAT-
1 AATGTATCGATACA-AAAATC
122884 AATGTATCGAT
1 AATGTATCGAT
122895 GCATTTCCTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
20 23 0.85
21 4 0.15
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (20 bp):
AATGTATCGATACAAAAATC
Found at i:123108 original size:13 final size:13
Alignment explanation
Indices: 123090--123115 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
123080 ACATTTTACT
123090 ATGTATCGATACA
1 ATGTATCGATACA
123103 ATGTATCGATACA
1 ATGTATCGATACA
123116 TTTCACTTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:123187 original size:19 final size:19
Alignment explanation
Indices: 123144--123199 Score: 85
Period size: 19 Copynumber: 2.9 Consensus size: 19
123134 TTGCCAGTTT
123144 CATGTATCGATACAATTGAG
1 CATGTATCGATACAA-TGAG
*
123164 TATGTATCGATACAATGAG
1 CATGTATCGATACAATGAG
*
123183 CATGTATCAATACAATG
1 CATGTATCGATACAATG
123200 TATCGATACA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 19 0.58
20 14 0.42
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.30
Consensus pattern (19 bp):
CATGTATCGATACAATGAG
Found at i:123866 original size:21 final size:21
Alignment explanation
Indices: 123836--123884 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
123826 GTAAATTTTC
* *
123836 AATAAATCTCCCCCTTAATAA
1 AATAATTCTCCCACTTAATAA
*
123857 AATAATTCTCCCACTTGATAA
1 AATAATTCTCCCACTTAATAA
123878 AATAATT
1 AATAATT
123885 AAAGCTCTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.43, C:0.22, G:0.02, T:0.33
Consensus pattern (21 bp):
AATAATTCTCCCACTTAATAA
Found at i:128232 original size:13 final size:13
Alignment explanation
Indices: 128214--128272 Score: 67
Period size: 13 Copynumber: 5.0 Consensus size: 13
128204 ACAAAAATCC
128214 ATGTATCGATACA
1 ATGTATCGATACA
128227 ATGTATCGATAC-
1 ATGTATCGATACA
*
128239 ATG----GA-ATA
1 ATGTATCGATACA
128247 ATGTATCGATACA
1 ATGTATCGATACA
128260 ATGTATCGATACA
1 ATGTATCGATACA
128273 TGGAATAATG
Statistics
Matches: 38, Mismatches: 2, Indels: 12
0.73 0.04 0.23
Matches are distributed among these distances:
7 1 0.03
8 5 0.13
12 5 0.13
13 27 0.71
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:128235 original size:33 final size:33
Alignment explanation
Indices: 128193--128289 Score: 133
Period size: 33 Copynumber: 2.9 Consensus size: 33
128183 AAAATTCCCA
*
128193 AATGTATCGATACA-AAAATCCATGTATCGATAC
1 AATGTATCGATACATAAAAT-AATGTATCGATAC
**
128226 AATGTATCGATACATGGAATAATGTATCGATAC
1 AATGTATCGATACATAAAATAATGTATCGATAC
**
128259 AATGTATCGATACATGGAATAATGTATCGAT
1 AATGTATCGATACATAAAATAATGTATCGAT
128290 GTATTTCCTT
Statistics
Matches: 60, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
33 57 0.95
34 3 0.05
ACGTcount: A:0.40, C:0.13, G:0.16, T:0.30
Consensus pattern (33 bp):
AATGTATCGATACATAAAATAATGTATCGATAC
Found at i:128251 original size:20 final size:20
Alignment explanation
Indices: 128226--128289 Score: 79
Period size: 20 Copynumber: 3.5 Consensus size: 20
128216 GTATCGATAC
128226 AATGTATCGATACATGGAAT
1 AATGTATCGATACATGGAAT
128246 AATGTATCGATAC-------
1 AATGTATCGATACATGGAAT
128259 AATGTATCGATACATGGAAT
1 AATGTATCGATACATGGAAT
128279 AATGTATCGAT
1 AATGTATCGAT
128290 GTATTTCCTT
Statistics
Matches: 37, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
13 13 0.35
20 24 0.65
ACGTcount: A:0.39, C:0.11, G:0.19, T:0.31
Consensus pattern (20 bp):
AATGTATCGATACATGGAAT
Found at i:129155 original size:47 final size:47
Alignment explanation
Indices: 129071--129162 Score: 121
Period size: 47 Copynumber: 2.0 Consensus size: 47
129061 TCGAAGATGC
** * *
129071 GAAGAATGACAATGTGCTGATTCATGGCCAGCGACATTAGGCTTAAA
1 GAAGAATGACAATGTGCTGAGACAAGGCCAGCAACATTAGGCTTAAA
* * *
129118 GAAGAATGCCAATGTGCTGAGACAAGGCTAGCAACATTGGGCTTA
1 GAAGAATGACAATGTGCTGAGACAAGGCCAGCAACATTAGGCTTA
129163 GAAATGTTAA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
47 38 1.00
ACGTcount: A:0.34, C:0.17, G:0.27, T:0.22
Consensus pattern (47 bp):
GAAGAATGACAATGTGCTGAGACAAGGCCAGCAACATTAGGCTTAAA
Found at i:129238 original size:48 final size:48
Alignment explanation
Indices: 129176--129536 Score: 285
Period size: 48 Copynumber: 7.9 Consensus size: 48
129166 ATGTTAAAGA
* * *
129176 TGCCAATATACTGATTCAAGGCCAACAATATTGGACTTAAAGACAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGACAAGG
* *
129224 TGCCAATATGCTGATTTAAGACCAGCGATATTAGG-CTT-------A--
1 TGCCAATATGCTGATTCAAGGCCAGCGATATT-GGACTTAAAGACAAGG
* * * * *
129263 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAGAGACAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGACAAGG
*
129311 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT-------A--
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGACAAGG
* * * *
129350 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGACAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGACAAGG
* * **
129398 TGCCAATATGCTGATTC-AGGACCAGTGATATTGGACTTAAAGATGAATA
1 TGCCAATATGCTGATTCAAGG-CCAGCGATATTGGACTTAAAGA-CAAGG
* * * * * * *
129447 TGCCAATGTGCTGATTCAAGGTCATCGACATTCGTCTTAAAGATAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGA-CAAGG
* * *
129496 TGCCAATATGCTAATTTAAGGCCAGCGATATTGGAATTAAA
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAA
129537 AGAAGACACC
Statistics
Matches: 246, Mismatches: 44, Indels: 45
0.73 0.13 0.13
Matches are distributed among these distances:
38 2 0.01
39 65 0.26
41 2 0.01
46 2 0.01
47 3 0.01
48 98 0.40
49 71 0.29
50 3 0.01
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (48 bp):
TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGACAAGG
Found at i:129278 original size:39 final size:38
Alignment explanation
Indices: 129224--129388 Score: 150
Period size: 39 Copynumber: 4.0 Consensus size: 38
129214 AAAGACAAGG
* *
129224 TGCCAATATGCTGATTTAAGACCAGCGATATTAGGCTTA
1 TGCCAATATGCTGATTCAAGGCCAGCGATATT-GGCTTA
* * *
129263 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAGAGACAA
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGG-CTT-------A
129309 GGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTA
1 --TGCCAATATGCTGATTCAAGGCCAGCGATATT-GGCTTA
* *
129350 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTA
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGG-CTTA
129389 GAGACAAGGT
Statistics
Matches: 104, Mismatches: 10, Indels: 24
0.75 0.07 0.17
Matches are distributed among these distances:
38 4 0.04
39 64 0.62
41 1 0.01
46 1 0.01
48 32 0.31
49 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (38 bp):
TGCCAATATGCTGATTCAAGGCCAGCGATATTGGCTTA
Found at i:129321 original size:87 final size:86
Alignment explanation
Indices: 129175--129529 Score: 413
Period size: 87 Copynumber: 4.0 Consensus size: 86
129165 AATGTTAAAG
* * * * *
129175 ATGCCAATATACTGATTCAAGGCCAACAATATTGGACTTAAAGACAAGGTGCCAATATGCTGATT
1 ATGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATT
*
129240 TAAGACCAGCGATATTAGGCTT
66 CAAGACCAGCGATATT-GGCTT
*
129262 ATGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAGAGACAAGGTGCCAATATGCTGATT
1 ATGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATT
*
129327 CAAGGCCAGCGATATTGGGCTT
66 CAAGACCAGCGATATT-GGCTT
* *
129349 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGACAAGGTGCCAATATGCTGATT
1 ATGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATT
* *
129414 CAGGACCAGTGATATTGGACTTAAAGATGAAT
66 CAAGACCAGCGATATTGG-C-------T---T
* * * * *
129446 ATGCCAATGTGCTGATTCAAGGTCATCGACATTCGTCTTAAAGATAAAGGTGCCAATATGCTAAT
1 ATGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGA-CAAGGTGCCAATATGCTGAT
* *
129511 TTAAGGCCAGCGATATTGG
65 TCAAGACCAGCGATATTGG
129530 AATTAAAAGA
Statistics
Matches: 233, Mismatches: 23, Indels: 13
0.87 0.09 0.05
Matches are distributed among these distances:
86 2 0.01
87 156 0.67
94 1 0.00
97 41 0.18
98 33 0.14
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (86 bp):
ATGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATT
CAAGACCAGCGATATTGGCTT
Found at i:129462 original size:49 final size:47
Alignment explanation
Indices: 129348--129536 Score: 146
Period size: 49 Copynumber: 3.9 Consensus size: 47
129338 ATATTGGGCT
* *
129348 TATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGACAA
1 TATGCCAATGTGCTGATTC-AGGCCAGCGACATTGGACTTAAAGACAA
** * * * *
129396 GGTGCCAATATGCTGATTCAGGACCAGTGATATTGGACTTAAAGATGAA
1 TATGCCAATGTGCTGATTCAGG-CCAGCGACATTGGACTTAAAGA-CAA
* * * * *
129445 TATGCCAATGTGCTGATTCAAGGTCATCGACATTCGTCTTAAAGATAA
1 TATGCCAATGTGCTGATTC-AGGCCAGCGACATTGGACTTAAAGACAA
* * * * *
129493 -AGGTGCCAATATGCTAATTTAAGGCCAGCGATATTGGAATTAAA
1 TA--TGCCAATGTGCTGA-TTCAGGCCAGCGACATTGGACTTAAA
129537 AGAAGACACC
Statistics
Matches: 108, Mismatches: 27, Indels: 11
0.74 0.18 0.08
Matches are distributed among these distances:
47 4 0.04
48 36 0.33
49 63 0.58
50 5 0.05
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (47 bp):
TATGCCAATGTGCTGATTCAGGCCAGCGACATTGGACTTAAAGACAA
Found at i:129709 original size:36 final size:36
Alignment explanation
Indices: 129621--129738 Score: 159
Period size: 35 Copynumber: 3.3 Consensus size: 36
129611 TTATGGGCTT
* * * *
129621 AAAAGAAAAAAGAGTGCCACGAAGTTGTGGGCTTAC
1 AAAAGAAAAAGGAGTGCCACGGAGTTGTGGACTTAA
129657 AAAAG-AAAAGGAGTGCCACGGAGTTGTGGACTTAA
1 AAAAGAAAAAGGAGTGCCACGGAGTTGTGGACTTAA
* * *
129692 AAAAGAAAAAGGAGTGCCACAGAGTTATGGCCTTAA
1 AAAAGAAAAAGGAGTGCCACGGAGTTGTGGACTTAA
129728 AAAA-AAAAAGG
1 AAAAGAAAAAGG
129739 TGCCAATATG
Statistics
Matches: 74, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
35 38 0.51
36 36 0.49
ACGTcount: A:0.46, C:0.12, G:0.27, T:0.15
Consensus pattern (36 bp):
AAAAGAAAAAGGAGTGCCACGGAGTTGTGGACTTAA
Found at i:129806 original size:76 final size:76
Alignment explanation
Indices: 129705--129890 Score: 300
Period size: 76 Copynumber: 2.4 Consensus size: 76
129695 AGAAAAAGGA
* * * * *
129705 GTGCCACAGAGTTATGGCCTTAAAAAAAAAAAGGTGCCAATATGCTGACTCAAGGCTAACGATTT
1 GTGCCACGGAGTTGTGGACTTAAAAAAGAAAAGGTGCCAATATGCTGACTCAAGGCTAACGATAT
129770 TGGGCTTAAAG
66 TGGGCTTAAAG
* * *
129781 GTGCTATGGAGTTGTGGACTTAAAAAAGAAAAGGTGCCAATATGCTGACTCAAGGCTAGCGATAT
1 GTGCCACGGAGTTGTGGACTTAAAAAAGAAAAGGTGCCAATATGCTGACTCAAGGCTAACGATAT
129846 TGGGCTTAAAG
66 TGGGCTTAAAG
129857 GTGCCACGGAGTTGTGGACTTAAAAAAGAAAAGG
1 GTGCCACGGAGTTGTGGACTTAAAAAAGAAAAGG
129891 AGTGCCACGG
Statistics
Matches: 100, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
76 100 1.00
ACGTcount: A:0.35, C:0.15, G:0.27, T:0.23
Consensus pattern (76 bp):
GTGCCACGGAGTTGTGGACTTAAAAAAGAAAAGGTGCCAATATGCTGACTCAAGGCTAACGATAT
TGGGCTTAAAG
Found at i:129897 original size:35 final size:35
Alignment explanation
Indices: 129857--129925 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
129847 GGGCTTAAAG
129857 GTGCCACGGAGTTGTGGACTTAAAAAAGAAAAGGA
1 GTGCCACGGAGTTGTGGACTTAAAAAAGAAAAGGA
129892 GTGCCACGGAGTTGTGGACTTAAAAAAGAAAAGG
1 GTGCCACGGAGTTGTGGACTTAAAAAAGAAAAGG
129926 TGCCAATCTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.39, C:0.12, G:0.32, T:0.17
Consensus pattern (35 bp):
GTGCCACGGAGTTGTGGACTTAAAAAAGAAAAGGA
Found at i:129912 original size:111 final size:108
Alignment explanation
Indices: 129777--130024 Score: 415
Period size: 111 Copynumber: 2.3 Consensus size: 108
129767 TTTTGGGCTT
* * *
129777 AAAGGTGCTATGGAGTTGTGGACTTAAAAAAGAAAAGGTGCCAATATGCTGACTCAAGGCTAGCG
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAAAGAAAAGGTGCCAATATGCTGACTCAAGGCTAGCA
*
129842 ATATTGGGCTTAAAGGTGCCACGGAGTTGTGGACTTAAAAAAGA
66 ATATTGGGCTTAAAGGTGCCACAGAGTTGTGGACTT-AAAAAGA
*
129886 AAAGGAGTGCCACGGAGTTGTGGACTTAAAAAAGAAAAGGTGCCAATCTGCTGACTCAAGGCTAG
1 AAA-G-GTGCCACGGAGTTGTGGACTTAAAAAAGAAAAGGTGCCAATATGCTGACTCAAGGCTAG
129951 CAATATTGGGCTTAAAGGTGCCACAGAGTTGTGGACTTAAAAAGA
64 CAATATTGGGCTTAAAGGTGCCACAGAGTTGTGGACTTAAAAAGA
*
129996 AAAGGTGCCACGGAGTTGTGGGCTTAAAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAA
130025 GGAAAAATAT
Statistics
Matches: 131, Mismatches: 6, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
108 24 0.18
109 4 0.03
110 11 0.08
111 92 0.70
ACGTcount: A:0.35, C:0.14, G:0.29, T:0.22
Consensus pattern (108 bp):
AAAGGTGCCACGGAGTTGTGGACTTAAAAAAGAAAAGGTGCCAATATGCTGACTCAAGGCTAGCA
ATATTGGGCTTAAAGGTGCCACAGAGTTGTGGACTTAAAAAGA
Found at i:129985 original size:187 final size:187
Alignment explanation
Indices: 129669--130005 Score: 559
Period size: 187 Copynumber: 1.8 Consensus size: 187
129659 AAGAAAAGGA
*
129669 GTGCCACGGAGTTGTGGACTTAAAAAAGAAAAAGGAGTGCCACAGAGTTATGGCCTTAAAAAAAA
1 GTGCCACGGAGTTGTGGACTTAAAAAAGAAAAAGGAGTGCCACAGAGTTATGGACTTAAAAAAAA
* * * **
129734 AAAGGTGCCAATATGCTGACTCAAGGCTAACGATTTTGGGCTTAAAGGTGCTATGGAGTTGTGGA
66 AAAGGTGCCAATATGCTGACTCAAGGCTAACAATATTGGGCTTAAAGGTGCCACAGAGTTGTGGA
129799 CTTAAAAAAGAAAAGGTGCCAATATGCTGACTCAAGGCTAGCGATATTGGGCTTAAAG
131 CTT-AAAAAGAAAAGGTGCCAATATGCTGACTCAAGGCTAGCGATATTGGGCTTAAAG
* * *
129857 GTGCCACGGAGTTGTGGACTTAAAAAAG-AAAAGGAGTGCCACGGAGTTGTGGACTTAAAAAAGA
1 GTGCCACGGAGTTGTGGACTTAAAAAAGAAAAAGGAGTGCCACAGAGTTATGGACTTAAAAAAAA
* *
129921 AAAGGTGCCAATCTGCTGACTCAAGGCTAGCAATATTGGGCTTAAAGGTGCCACAGAGTTGTGGA
66 AAAGGTGCCAATATGCTGACTCAAGGCTAACAATATTGGGCTTAAAGGTGCCACAGAGTTGTGGA
129986 CTTAAAAAGAAAAGGTGCCA
131 CTTAAAAAGAAAAGGTGCCA
130006 CGGAGTTGTG
Statistics
Matches: 138, Mismatches: 11, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
186 17 0.12
187 93 0.67
188 28 0.20
ACGTcount: A:0.36, C:0.15, G:0.28, T:0.22
Consensus pattern (187 bp):
GTGCCACGGAGTTGTGGACTTAAAAAAGAAAAAGGAGTGCCACAGAGTTATGGACTTAAAAAAAA
AAAGGTGCCAATATGCTGACTCAAGGCTAACAATATTGGGCTTAAAGGTGCCACAGAGTTGTGGA
CTTAAAAAGAAAAGGTGCCAATATGCTGACTCAAGGCTAGCGATATTGGGCTTAAAG
Found at i:130005 original size:32 final size:32
Alignment explanation
Indices: 129964--130030 Score: 107
Period size: 32 Copynumber: 2.1 Consensus size: 32
129954 TATTGGGCTT
129964 AAAGGTGCCACAGAGTTGTGGACTTAAAAAGA
1 AAAGGTGCCACAGAGTTGTGGACTTAAAAAGA
* * *
129996 AAAGGTGCCACGGAGTTGTGGGCTTAAAAGGA
1 AAAGGTGCCACAGAGTTGTGGACTTAAAAAGA
130028 AAA
1 AAA
130031 ATATGCCACA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.39, C:0.12, G:0.31, T:0.18
Consensus pattern (32 bp):
AAAGGTGCCACAGAGTTGTGGACTTAAAAAGA
Found at i:130075 original size:28 final size:28
Alignment explanation
Indices: 130042--130143 Score: 143
Period size: 28 Copynumber: 3.6 Consensus size: 28
130032 TATGCCACAA
130042 ACTTGTGGGCTTTTGAAGGTTGCCACTG
1 ACTTGTGGGCTTTTGAAGGTTGCCACTG
* * *
130070 ATTTGTGGGC-TTCGAAAAAGGGTGCCACTG
1 ACTTGTGGGCTTTTG---AAGGTTGCCACTG
130100 ACTTGTGGGCTTTTGAAGGTTGCCACTG
1 ACTTGTGGGCTTTTGAAGGTTGCCACTG
130128 ACTTGTGGGCTTTTGA
1 ACTTGTGGGCTTTTGA
130144 CAGGGTGAGG
Statistics
Matches: 64, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
27 3 0.05
28 37 0.58
30 21 0.33
31 3 0.05
ACGTcount: A:0.17, C:0.17, G:0.32, T:0.34
Consensus pattern (28 bp):
ACTTGTGGGCTTTTGAAGGTTGCCACTG
Found at i:131624 original size:25 final size:25
Alignment explanation
Indices: 131596--131650 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
131586 TGTTTTTTCG
131596 TTTGTTTT-TTT-TTTCTCTTCTTTTT
1 TTTGTTTTGTTTGTTTCT-TT-TTTTT
*
131621 TTTGTTTTGTTTGTTTGTTTTTTTT
1 TTTGTTTTGTTTGTTTCTTTTTTTT
131646 TTTGT
1 TTTGT
131651 GGAGGACACC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
25 18 0.67
26 5 0.19
27 4 0.15
ACGTcount: A:0.00, C:0.05, G:0.11, T:0.84
Consensus pattern (25 bp):
TTTGTTTTGTTTGTTTCTTTTTTTT
Found at i:131646 original size:18 final size:17
Alignment explanation
Indices: 131578--131650 Score: 60
Period size: 17 Copynumber: 4.3 Consensus size: 17
131568 CCGGACCCTT
* *
131578 TTTGTTGTTGTTTTTTCG
1 TTTGTT-TTTTTTTTTTG
* *
131596 TTTGTTTTTTTTTTCTC
1 TTTGTTTTTTTTTTTTG
*
131613 TTCT-TTTTTTTGTTTTG
1 TT-TGTTTTTTTTTTTTG
*
131630 TTTGTTTGTTTTTTTT-
1 TTTGTTTTTTTTTTTTG
131646 TTTGT
1 TTTGT
131651 GGAGGACACC
Statistics
Matches: 44, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
16 6 0.14
17 31 0.70
18 7 0.16
ACGTcount: A:0.00, C:0.05, G:0.14, T:0.81
Consensus pattern (17 bp):
TTTGTTTTTTTTTTTTG
Found at i:140599 original size:523 final size:523
Alignment explanation
Indices: 139615--140664 Score: 1877
Period size: 523 Copynumber: 2.0 Consensus size: 523
139605 GCCCTCGTAC
* *
139615 ATTTTTCTTTACTGGTTCCGACTTCCTCCCTTTGTCGCCTTAGCTCATAATTAAGGGTGGTAATT
1 ATTTTTCTTTACTGGTTCCAACTTCCTCCCTTTGTCGCCTTAGCTCATAATTAAGGGTGGCAATT
* *
139680 TCTGCTTCCCATTCGGCTAAGGTCTTGCCAATACATTGGGACTTACTGGCCTTTCGGAGTGCTGC
66 TCTGCTTCCCATTCAGCTAAGGTCTTGCCAATACACTGGGACTTACTGGCCTTTCGGAGTGCTGC
139745 ATAATCCTTGGTTAGGTCCTCGAGGTCATCTTTGAGCCGATTCTTTTCTTTGATGACTCGATCCA
131 ATAATCCTTGGTTAGGTCCTCGAGGTCATCTTTGAGCCGATTCTTTTCTTTGATGACTCGATCCA
*
139810 TTTCACCGCGCCTAAGATAGATATCCATCTCCAATTGGCTCTTGTCCTCCTTTAGCCGAGCAATT
196 TTTCACCGCACCTAAGATAGATATCCATCTCCAATTGGCTCTTGTCCTCCTTTAGCCGAGCAATT
* * *
139875 TCTGATGGAAATGATGTCTTTTCTTGTTCAAATTCCCTCCTAAGCAGCTCGATCTCAGAAGGAGG
261 TCTGATGCAAAGGATGTCTTTTCTTGTTCAAATTCCCTCCTAAGCAGCTCAATCTCAGAAGGAGG
*
139940 CTCTTCGATTGGGATTTAAAGTGTCCCAAAATTAGGTGGTGGTAATGCATCGTTAATATGGCGGA
326 CTCTTCGATTGGGATTTAAAGTGTCCCAAAATTAGGTGGTGGTAATGCATCGTTAATACGGCGGA
* *
140005 GTTTCCATTCTTCATATCTCGGAGTAGTGGGGCTTCCTCTCCAGTACCTTTCCATGCAATGGACC
391 GTTTCCATTCTTCATATCCCGGAGTAGTGGGGCTTCCTCTCCAGTACCTTTCCATGCAATAGACC
140070 TTCTTCCAGGCTTGAAAAGCCATCTGGACTTTCGCCTTATAGTTGGGCTCTCCATATTCAAAATC
456 TTCTTCCAGGCTTGAAAAGCCATCTGGACTTTCGCCTTATAGTTGGGCTCTCCATATTCAAAATC
140135 CCA
521 CCA
*
140138 ATTTTTCTTTATTGGTTCCAACTTCCTCCCTTTGTCGCCTTAGCTCATAATTAAGGGTGGCAATT
1 ATTTTTCTTTACTGGTTCCAACTTCCTCCCTTTGTCGCCTTAGCTCATAATTAAGGGTGGCAATT
* * *
140203 TCTGCTTTCCATTCAGCTGAGGTCTTGCCAATACGCTGGGACTTACTGGCCTTTCGGAGTGCTGC
66 TCTGCTTCCCATTCAGCTAAGGTCTTGCCAATACACTGGGACTTACTGGCCTTTCGGAGTGCTGC
140268 ATAATCCTTGGTTAGGTCCTCGAGGTCATCTTTGAGCCGATTCTTTTCTTTGATGACTCGATCCA
131 ATAATCCTTGGTTAGGTCCTCGAGGTCATCTTTGAGCCGATTCTTTTCTTTGATGACTCGATCCA
140333 TTTCACCGCACCTAAGATAGATATCCATCTCCAATTGGCTCTTGTCCTCCTTTAGCCGAGCAATT
196 TTTCACCGCACCTAAGATAGATATCCATCTCCAATTGGCTCTTGTCCTCCTTTAGCCGAGCAATT
* *
140398 TCT-ATTGCAAAGGATGTCTTTTCTTGTTTAAATTCCCTCCTAAGCAGCTCAATCTTAGAAGGAG
261 TCTGA-TGCAAAGGATGTCTTTTCTTGTTCAAATTCCCTCCTAAGCAGCTCAATCTCAGAAGGAG
* ** * * *
140462 GCTTTTCGATTGGGATTTGTAGTGTCTCGAAATTAGGTGGTGGTAATGCATCGTTAATGCGGCGG
325 GCTCTTCGATTGGGATTTAAAGTGTCCCAAAATTAGGTGGTGGTAATGCATCGTTAATACGGCGG
140527 AGTTTCCATTCTTCATATCCCGGAGTAGTGGGGCTTCCTCTCCAGTACCTTTCCATGCAATAGAC
390 AGTTTCCATTCTTCATATCCCGGAGTAGTGGGGCTTCCTCTCCAGTACCTTTCCATGCAATAGAC
140592 CTTCTTCCAGGCTTGAAAAGCCATCTGGACTTTCGCCTTATAGTTGGGCTCTCCATATTCAAAAT
455 CTTCTTCCAGGCTTGAAAAGCCATCTGGACTTTCGCCTTATAGTTGGGCTCTCCATATTCAAAAT
140657 CCCA
520 CCCA
140661 ATTT
1 ATTT
140665 CCTAAATTTT
Statistics
Matches: 503, Mismatches: 23, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
522 1 0.00
523 502 1.00
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.35
Consensus pattern (523 bp):
ATTTTTCTTTACTGGTTCCAACTTCCTCCCTTTGTCGCCTTAGCTCATAATTAAGGGTGGCAATT
TCTGCTTCCCATTCAGCTAAGGTCTTGCCAATACACTGGGACTTACTGGCCTTTCGGAGTGCTGC
ATAATCCTTGGTTAGGTCCTCGAGGTCATCTTTGAGCCGATTCTTTTCTTTGATGACTCGATCCA
TTTCACCGCACCTAAGATAGATATCCATCTCCAATTGGCTCTTGTCCTCCTTTAGCCGAGCAATT
TCTGATGCAAAGGATGTCTTTTCTTGTTCAAATTCCCTCCTAAGCAGCTCAATCTCAGAAGGAGG
CTCTTCGATTGGGATTTAAAGTGTCCCAAAATTAGGTGGTGGTAATGCATCGTTAATACGGCGGA
GTTTCCATTCTTCATATCCCGGAGTAGTGGGGCTTCCTCTCCAGTACCTTTCCATGCAATAGACC
TTCTTCCAGGCTTGAAAAGCCATCTGGACTTTCGCCTTATAGTTGGGCTCTCCATATTCAAAATC
CCA
Found at i:144612 original size:13 final size:13
Alignment explanation
Indices: 144594--144618 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
144584 CAAAGATCAG
144594 TGTATCGATACAA
1 TGTATCGATACAA
144607 TGTATCGATACA
1 TGTATCGATACA
144619 TTTAAGTGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:144716 original size:33 final size:33
Alignment explanation
Indices: 144659--144725 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
144649 AGTAGCTTAA
*
144659 ATTGTATCGATACAAAAAAATATGTATCGTTAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
144692 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
144725 A
1 A
144726 AACTGTTGAA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.39, C:0.15, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:145629 original size:67 final size:68
Alignment explanation
Indices: 145503--145629 Score: 159
Period size: 67 Copynumber: 1.9 Consensus size: 68
145493 ATTGGGTTTT
* * * * *
145503 AAAGATGATGAAGCTGCCAATATGTTGATTCAAGGCCAGTAATATTGGACTTAAAGATGAAGATG
1 AAAGATGATAAAGATGCCAATATGTTGATGCAAGACCAATAATATTGGACTTAAAGATGAAGATG
145568 AGA
66 AGA
* * *
145571 AAAG-TGATAAAGATGCTAATATGTTGATGCACGACCAATGATATTAGG-CTTAAAGATGA
1 AAAGATGATAAAGATGCCAATATGTTGATGCAAGACCAATAATATT-GGACTTAAAGATGA
145630 GAAAAAGGAT
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
67 44 0.88
68 6 0.12
ACGTcount: A:0.40, C:0.10, G:0.24, T:0.26
Consensus pattern (68 bp):
AAAGATGATAAAGATGCCAATATGTTGATGCAAGACCAATAATATTGGACTTAAAGATGAAGATG
AGA
Found at i:145754 original size:21 final size:20
Alignment explanation
Indices: 145687--145754 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 20
145677 AAAGATGGAA
145687 AAGGTGCCAATATGCTGATTC
1 AAGGTGCCAAT-TGCTGATTC
* *
145708 AAGGCTAGCTATATTG--GACTTA
1 AAGG-T-GCCA-ATTGCTGA-TTC
145730 AAGGTGCCAATGTGCTGATTC
1 AAGGTGCCAAT-TGCTGATTC
145751 AAGG
1 AAGG
145755 CCAGCTACAT
Statistics
Matches: 36, Mismatches: 4, Indels: 14
0.67 0.07 0.26
Matches are distributed among these distances:
19 2 0.06
20 5 0.14
21 13 0.36
22 9 0.25
23 5 0.14
24 2 0.06
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.28
Consensus pattern (20 bp):
AAGGTGCCAATTGCTGATTC
Found at i:145851 original size:49 final size:49
Alignment explanation
Indices: 145642--146065 Score: 565
Period size: 49 Copynumber: 8.7 Consensus size: 49
145632 AAAAGGATGT
*
145642 CAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGC
* * *
145694 CAATATGCTGATTCAAGGCTAGCTATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
145737 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTG-AGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
145785 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
145834 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * *
145883 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * * *
145932 CAATGTGCTGAGTCAAGGCCAGTTACATTGAACTTAATGGTGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
145981 CAATGTGCTGAGTCAAGGCCAGCTACGTTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * *
146030 CAATATGCTGATTCAAGGCTAGCTATATTGGGCTTA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
146066 GAAGGGTTGC
Statistics
Matches: 331, Mismatches: 34, Indels: 17
0.87 0.09 0.04
Matches are distributed among these distances:
43 39 0.12
48 48 0.15
49 213 0.64
52 31 0.09
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (49 bp):
CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
Found at i:146180 original size:34 final size:35
Alignment explanation
Indices: 146125--146216 Score: 116
Period size: 35 Copynumber: 2.7 Consensus size: 35
146115 TGGGCTTTTG
* *
146125 AAAAGGGTGCCACTA-ACTTGTGGGCTTA-AAAAGA
1 AAAAGAGTGCCA-TAGAGTTGTGGGCTTACAAAAGA
* *
146159 AAAAGAGTGCTATAGAGTTGTGAGCTTACAAAAGA
1 AAAAGAGTGCCATAGAGTTGTGGGCTTACAAAAGA
*
146194 AAAAGAGTGCCATGGAGTTGTGG
1 AAAAGAGTGCCATAGAGTTGTGG
146217 ACTTTGGAAA
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
33 2 0.04
34 21 0.43
35 26 0.53
ACGTcount: A:0.38, C:0.11, G:0.29, T:0.22
Consensus pattern (35 bp):
AAAAGAGTGCCATAGAGTTGTGGGCTTACAAAAGA
Found at i:146243 original size:29 final size:29
Alignment explanation
Indices: 146194--146364 Score: 161
Period size: 29 Copynumber: 5.9 Consensus size: 29
146184 TTACAAAAGA
* *
146194 AAAAGAGTGCCA-TGGAGTTGTGGACTTTGG
1 AAAAGA-TGCCACT-GACTTGTGGGCTTTGG
* *
146224 AAAAGATGCCACCGACTTGTGGGCTTCGG
1 AAAAGATGCCACTGACTTGTGGGCTTTGG
* *
146253 AAAAGGGTGCCACTGATTTGTGGGCTTT-G
1 AAAA-GATGCCACTGACTTGTGGGCTTTGG
* * *
146282 -AAGGTTGCCACTGACTTGTGGGCTTTTG
1 AAAAGATGCCACTGACTTGTGGGCTTTGG
* * *
146310 -AAGGTTGCCACTGACTTGTGGGCTTTGA
1 AAAAGATGCCACTGACTTGTGGGCTTTGG
* *
146338 AAAATATGCCACTGACTTGTGGACTTT
1 AAAAGATGCCACTGACTTGTGGGCTTT
146365 TGAAGGGTGA
Statistics
Matches: 120, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
27 21 0.17
28 29 0.24
29 45 0.38
30 25 0.21
ACGTcount: A:0.22, C:0.17, G:0.31, T:0.30
Consensus pattern (29 bp):
AAAAGATGCCACTGACTTGTGGGCTTTGG
Found at i:146318 original size:28 final size:28
Alignment explanation
Indices: 146230--146370 Score: 160
Period size: 28 Copynumber: 5.0 Consensus size: 28
146220 TTGGAAAAGA
* ** *
146230 TGCCACCGACTTGTGGGCTTCGGAAAAGGG
1 TGCCACTGACTTGTGGGCTTTTG--AAGGT
*
146260 TGCCACTGATTTGTGGGC-TTTGAAGGT
1 TGCCACTGACTTGTGGGCTTTTGAAGGT
146287 TGCCACTGACTTGTGGGCTTTTGAAGGT
1 TGCCACTGACTTGTGGGCTTTTGAAGGT
**
146315 TGCCACTGACTTGTGGGC-TTTGAAAAAT
1 TGCCACTGACTTGTGGGCTTTTG-AAGGT
*
146343 ATGCCACTGACTTGTGGACTTTTGAAGG
1 -TGCCACTGACTTGTGGGCTTTTGAAGG
146371 GTGATGAATG
Statistics
Matches: 96, Mismatches: 11, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
27 25 0.26
28 30 0.31
29 21 0.22
30 20 0.21
ACGTcount: A:0.19, C:0.18, G:0.31, T:0.31
Consensus pattern (28 bp):
TGCCACTGACTTGTGGGCTTTTGAAGGT
Found at i:146348 original size:57 final size:56
Alignment explanation
Indices: 146211--146373 Score: 193
Period size: 57 Copynumber: 2.9 Consensus size: 56
146201 TGCCATGGAG
* * * ** *
146211 TTGTGGACTTTGGAAAAGATGCCACCGACTTGTGGGCTTCGGAAAAGGGTGCCACTGAT
1 TTGTGGGCTTT-GAAAATATGCCACTGACTTGTGGGCTTTTG--AAGGGTGCCACTGAC
** *
146270 TTGTGGGCTTTGAAGGT-TGCCACTGACTTGTGGGCTTTTGAAGGTTGCCACTGAC
1 TTGTGGGCTTTGAAAATATGCCACTGACTTGTGGGCTTTTGAAGGGTGCCACTGAC
*
146325 TTGTGGGCTTTGAAAAATATGCCACTGACTTGTGGACTTTTGAAGGGTG
1 TTGTGGGCTTTG-AAAATATGCCACTGACTTGTGGGCTTTTGAAGGGTG
146374 ATGAATGTCT
Statistics
Matches: 89, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
55 25 0.28
56 3 0.03
57 48 0.54
58 3 0.03
59 10 0.11
ACGTcount: A:0.20, C:0.17, G:0.32, T:0.31
Consensus pattern (56 bp):
TTGTGGGCTTTGAAAATATGCCACTGACTTGTGGGCTTTTGAAGGGTGCCACTGAC
Found at i:147827 original size:15 final size:15
Alignment explanation
Indices: 147807--147842 Score: 56
Period size: 15 Copynumber: 2.4 Consensus size: 15
147797 CTGGACCCCC
147807 TTTTTGTTTGTT-TTT
1 TTTTTGTTT-TTGTTT
147822 TTTTTGTTTTTGTTT
1 TTTTTGTTTTTGTTT
147837 TTTTTG
1 TTTTTG
147843 GAAGACGCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 2 0.10
15 18 0.90
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (15 bp):
TTTTTGTTTTTGTTT
Done.