Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2725
Parameters: 2 7 7 80 10 50 1000
Length:  53928

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2052--2092
11
3.7
11
86
0
55
85
14
0
0
0.60
2052--2117
10
6.6
10
78
18
66
83
16
0
0
0.65
2053--2117
12
5.1
12
85
12
69
84
15
0
0
0.62
2063--2117
8
7.0
8
85
6
69
85
14
0
0
0.60
2052--2117
33
2.0
33
85
5
89
83
16
0
0
0.65
3585--3833
33
7.7
33
87
5
366
30
31
21
17
1.96
3839--4113
43
5.8
48
81
11
327
25
24
17
32
1.97
3837--4108
92
2.9
92
94
1
472
26
25
17
31
1.97
4001--4068
21
3.2
20
66
25
50
27
26
16
29
1.97
4023--4176
52
2.9
53
80
4
184
25
22
14
37
1.93
4126--4252
67
1.9
68
86
1
184
23
24
13
38
1.91
5029--5108
13
6.1
13
69
28
62
35
13
12
38
1.83
5010--5076
32
2.1
33
94
2
118
35
11
11
40
1.79
8303--8542
118
2.0
121
88
4
362
44
6
14
35
1.71
8625--8654
15
2.0
15
93
0
51
50
0
13
36
1.42
12264--12346
26
3.2
26
62
21
64
33
19
14
32
1.92
13613--13641
2
14.5
2
100
0
58
48
0
0
51
1.00
19058--19109
19
2.7
20
84
6
70
40
17
13
28
1.87
21309--21358
21
2.3
21
80
10
57
56
4
18
22
1.58
25385--25430
21
2.2
20
81
11
58
32
19
4
43
1.71
27809--27834
13
2.0
13
100
0
52
38
15
15
30
1.88
27791--27854
32
2.0
33
87
3
94
40
17
14
28
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34321--34345
13
1.9
13
100
0
50
36
16
16
32
1.90
34389--34485
19
5.8
17
71
28
75
37
18
12
31
1.88
34408--34463
13
3.8
13
75
24
58
33
17
14
33
1.90
34386--34483
32
3.0
32
95
1
169
35
18
12
33
1.88
35167--35240
33
2.2
33
92
0
121
36
16
16
31
1.91
35203--35256
20
2.7
20
88
5
74
37
16
14
31
1.89
35656--35714
32
1.9
30
83
13
75
59
10
10
20
1.58
35806--35832
13
2.1
13
100
0
54
29
14
14
40
1.86
44630--44656
11
2.5
11
100
0
54
48
7
22
22
1.75
51533--51568
3
12.0
3
87
0
54
30
30
0
38
1.58
53144--53197
20
2.7
20
91
5
83
37
18
14
29
1.91
53226--53285
20
3.0
20
82
7
86
35
16
13
35
1.88
53225--53281
19
2.9
19
87
5
87
35
15
14
35
1.88
53266--53292
13
2.1
13
100
0
54
40
14
14
29
1.86
53247--53311
33
2.0
32
87
3
94
40
13
15
30
1.86

Tables:   1

The End!