genome.fa.s2726.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2726
Parameters: 2 7 7 80 10 50 1000
Length:  54187

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
428--478	12	3.9	12	78	16	57	39	11	5	43	1.66
481--506	12	2.2	12	100	0	52	23	26	34	15	1.94
5175--5220	12	3.6	12	78	16	56	43	10	0	45	1.39
5374--5420	2	22.5	2	82	8	58	44	4	2	48	1.34
6321--6407	41	2.1	41	80	4	95	34	12	10	42	1.77
6432--6565	67	2.0	69	86	5	193	55	0	0	44	1.05
6483--6527	21	2.2	21	88	11	67	57	2	0	40	1.11
6581--6609	3	9.7	3	100	0	58	31	0	0	68	0.89
6945--7018	19	3.8	19	75	16	53	40	1	1	56	1.16
6992--7058	23	3.0	23	79	16	70	37	1	1	59	1.16
10310--10385	24	2.9	28	82	15	115	60	0	0	39	0.97
10327--10392	24	2.8	23	86	6	96	56	0	1	42	1.08
10787--10822	3	12.0	3	100	0	72	66	0	0	33	0.92
10868--10914	24	2.0	24	83	8	60	44	0	0	55	0.99
10839--10967	70	1.9	66	81	9	152	45	0	0	52	1.11
18240--18264	3	8.3	3	100	0	50	68	32	0	0	0.90
22288--22355	11	5.8	11	73	24	59	5	19	0	75	1.01
23780--23980	79	2.6	78	84	4	235	30	16	28	24	1.96
23777--23977	78	2.6	78	83	2	233	29	16	29	24	1.96
23932--24003	28	2.6	27	89	8	101	25	19	33	22	1.97
23992--24161	52	3.3	52	77	9	177	32	12	25	29	1.93
24135--24216	27	3.0	28	82	10	98	26	21	29	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23846--24270	107	4.0	106	74	9	369	31	14	26	26	1.95
24207--24319	51	2.2	53	81	10	126	34	10	23	30	1.89
23925--24330	212	1.9	212	88	4	613	31	13	26	27	1.94
26691--26716	13	2.0	13	100	0	52	38	15	15	30	1.88
26670--26736	33	2.0	33	88	0	98	43	16	14	25	1.86
26756--26823	19	3.9	18	76	23	83	38	14	11	35	1.83
26778--26802	13	1.9	13	100	0	50	32	16	16	36	1.90
26759--26821	32	2.0	32	96	0	117	36	15	12	34	1.86
27516--28314	55	14.3	55	86	4	1084	23	20	28	28	1.99
27370--28314	110	8.4	110	86	5	1245	23	20	28	28	1.99
27899--28041	26	5.3	26	65	15	83	20	19	31	27	1.97
27370--28319	391	2.4	390	93	1	1618	23	20	28	27	1.99
29270--29330	14	4.5	13	85	6	61	0	6	8	85	0.75
29255--29330	13	5.5	13	74	13	55	0	10	6	82	0.82
29255--29330	15	5.0	14	80	13	71	0	10	6	82	0.82
43117--43322	106	1.9	107	82	5	256	30	15	27	26	1.96
43200--43273	27	2.7	27	87	2	94	24	18	32	24	1.97
43257--43429	52	3.3	52	77	9	183	32	12	25	29	1.93
43229--43567	184	1.8	184	88	3	522	31	12	26	29	1.92
43444--43562	51	2.3	53	82	7	136	32	10	23	32	1.90
43954--43983	15	2.0	15	100	0	60	33	26	6	33	1.83
45867--45892	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45932--45999	19	3.9	18	76	23	83	38	14	11	35	1.83
45954--45978	13	1.9	13	100	0	50	32	16	16	36	1.90
45935--45997	32	2.0	32	96	0	117	36	15	12	34	1.86
46831--46942	28	4.0	28	74	6	84	21	13	29	35	1.91
47027--47103	28	2.7	29	84	4	86	18	15	27	38	1.91
47120--47161	20	2.1	20	95	0	75	19	9	23	47	1.78
48024--48117	46	2.0	46	100	0	188	17	17	21	44	1.86
53369--53417	14	3.4	15	78	21	52	75	0	22	2	0.90
53392--53422	9	3.3	9	95	4	53	87	0	12	0	0.55

Tables:   1

The End!