genome.fa.s2729.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2729
Parameters: 2 7 7 80 10 50 1000
Length:  41574

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3746--3818	20	3.6	20	81	3	101	35	13	19	31	1.91
3764--3839	21	3.7	21	78	3	91	40	11	17	30	1.85
3746--3839	41	2.3	41	96	0	170	38	12	18	30	1.88
3878--3903	13	2.0	13	100	0	52	38	15	15	30	1.88
4361--4427	37	1.9	35	88	11	102	32	11	25	29	1.92
5535--5586	21	2.5	21	96	0	95	42	7	25	25	1.81
7506--7530	13	1.9	13	100	0	50	36	16	16	32	1.90
8683--8729	23	2.0	23	100	0	94	31	4	12	51	1.59
9365--9437	20	3.6	20	81	3	101	35	13	19	31	1.91
9383--9458	21	3.7	21	78	3	91	40	11	17	30	1.85
9365--9458	41	2.3	41	96	0	170	38	12	18	30	1.88
9497--9522	13	2.0	13	100	0	52	38	15	15	30	1.88
9980--10046	37	1.9	35	88	11	102	32	11	25	29	1.92
10315--10345	13	2.4	13	94	0	53	35	12	16	35	1.87
10297--10361	33	2.0	33	84	6	87	35	16	13	33	1.89
11029--11070	22	1.9	22	90	0	66	28	28	0	42	1.56
15673--15721	13	4.2	13	75	24	63	32	12	18	36	1.88
15652--15721	33	2.1	34	89	7	108	32	12	20	34	1.90
19791--19919	52	2.5	52	96	0	240	27	17	19	36	1.94
19791--19939	52	2.9	52	89	6	230	28	16	19	34	1.94
19928--19952	13	1.9	13	100	0	50	36	16	16	32	1.90
19995--20088	19	5.6	18	68	28	73	34	17	13	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20014--20070	13	3.9	13	72	24	51	31	17	15	35	1.92
19993--20088	32	3.0	32	93	1	165	34	16	13	35	1.88
20993--21017	3	8.3	3	100	0	50	32	0	36	32	1.58
32795--32848	20	2.7	20	91	0	81	37	18	14	29	1.91
35036--35076	18	2.3	19	79	12	50	48	2	7	41	1.44
35108--35170	3	20.7	3	74	20	51	66	4	28	0	1.12
35108--35170	10	6.5	10	80	17	55	66	4	28	0	1.12
35112--35198	33	2.6	33	78	3	95	66	4	24	4	1.29
38398--38505	21	5.3	21	72	11	75	32	21	6	39	1.79
39586--39618	16	2.1	16	88	11	50	33	12	0	54	1.37
40290--40337	12	4.0	12	89	5	71	81	0	18	0	0.70
40290--40334	23	2.0	21	91	8	72	82	0	17	0	0.68
40290--40334	11	4.1	11	91	8	74	82	0	17	0	0.68

Tables:   1

The End!