genome.fa.s2730.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2730
Parameters: 2 7 7 80 10 50 1000
Length:  43197

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5574--6291	79	9.2	78	83	5	822	34	13	23	28	1.93
5611--6292	235	2.9	234	85	3	899	35	13	23	28	1.92
5574--6288	314	2.3	313	84	6	946	34	13	23	28	1.93
10483--10529	21	2.2	21	88	0	67	29	14	23	31	1.95
11046--11075	14	2.1	14	93	0	51	33	26	0	40	1.57
12095--12160	33	2.0	33	82	5	80	33	18	18	30	1.94
20931--21003	20	3.6	20	81	3	101	35	13	19	31	1.91
20949--21024	21	3.7	21	80	3	100	42	11	17	28	1.84
20931--21024	41	2.3	41	98	0	179	39	12	18	29	1.88
21063--21088	13	2.0	13	100	0	52	38	15	15	30	1.88
25149--25179	15	2.1	15	93	0	53	48	16	22	12	1.80
27193--27271	20	3.7	21	75	15	72	26	13	15	44	1.84
27258--27296	13	3.0	13	96	0	69	30	17	15	35	1.91
29100--29144	14	2.9	16	80	16	58	35	2	35	26	1.69
29746--29818	20	3.6	20	81	3	101	35	13	19	31	1.91
29764--29839	21	3.7	21	80	3	100	42	11	17	28	1.84
29746--29839	41	2.3	41	98	0	179	39	12	18	29	1.88
29878--29903	13	2.0	13	100	0	52	38	15	15	30	1.88
31130--31203	20	3.6	20	79	13	96	36	13	18	31	1.90
31130--31224	42	2.3	42	96	1	174	40	12	17	29	1.87
31263--31288	13	2.0	13	100	0	52	38	15	15	30	1.88
31245--31307	32	2.0	32	87	6	92	39	15	15	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35014--35038	13	1.9	13	100	0	50	36	16	16	32	1.90
36595--36667	20	3.6	20	81	3	101	35	13	19	31	1.91
36613--36688	21	3.7	21	80	3	100	42	11	17	28	1.84
36595--36688	41	2.3	41	98	0	179	39	12	18	29	1.88
36727--36752	13	2.0	13	100	0	52	38	15	15	30	1.88
40490--40514	13	1.9	13	100	0	50	36	16	16	32	1.90
42071--42143	20	3.6	20	81	3	101	35	13	19	31	1.91
42071--42163	41	2.3	40	98	1	177	38	12	18	30	1.88
42089--42163	20	3.7	21	80	5	100	41	12	17	29	1.85
42202--42227	13	2.0	13	100	0	52	38	15	15	30	1.88

Tables:   1

The End!