Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold274
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1642345
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 31972 characters in sequence are not A, C, G, or T
File 8 of 10
Found at i:1085594 original size:19 final size:19
Alignment explanation
Indices: 1085564--1085612 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
1085554 CAAGAGTTTG
*
1085564 CTTTTATTTCTCTTATTTTC
1 CTTTT-TTTCTCTTATTTTA
*
1085584 CTTTTTTTCTCTTTTTTTA
1 CTTTTTTTCTCTTATTTTA
*
1085603 TTTTTTTTCT
1 CTTTTTTTCT
1085613 TCACTTACTG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 21 0.81
20 5 0.19
ACGTcount: A:0.06, C:0.16, G:0.00, T:0.78
Consensus pattern (19 bp):
CTTTTTTTCTCTTATTTTA
Found at i:1085597 original size:10 final size:10
Alignment explanation
Indices: 1085564--1085612 Score: 57
Period size: 9 Copynumber: 5.0 Consensus size: 10
1085554 CAAGAGTTTG
1085564 CTTTTATTTCT
1 CTTTT-TTTCT
*
1085575 CTTATTTTC-
1 CTTTTTTTCT
1085584 CTTTTTTTCT
1 CTTTTTTTCT
*
1085594 CTTTTTTTAT
1 CTTTTTTTCT
1085604 -TTTTTTTCT
1 CTTTTTTTCT
1085613 TCACTTACTG
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
9 16 0.48
10 13 0.39
11 4 0.12
ACGTcount: A:0.06, C:0.16, G:0.00, T:0.78
Consensus pattern (10 bp):
CTTTTTTTCT
Found at i:1086991 original size:2 final size:2
Alignment explanation
Indices: 1086984--1087030 Score: 60
Period size: 2 Copynumber: 22.5 Consensus size: 2
1086974 AAATTAAAGT
1086984 TA TA TA TA TCA -A TA TGA TA TGA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA T-A TA TA T-A TA T-A TA TA TA TA TA TA TA TA TA TA
1087026 TA TA T
1 TA TA T
1087031 CTTAACTAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
1 1 0.02
2 35 0.85
3 5 0.12
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (2 bp):
TA
Found at i:1087259 original size:19 final size:18
Alignment explanation
Indices: 1087212--1087265 Score: 54
Period size: 19 Copynumber: 2.8 Consensus size: 18
1087202 TTTATAATTC
*
1087212 ATATTATATAAATTTTGTT
1 ATATT-TATATATTTTGTT
* *
1087231 ATGTTCATATATTTGTGTT
1 ATATTTATATATTT-TGTT
1087250 ATATTTATATTATTTT
1 ATATTTATA-TATTTT
1087266 TATATTATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
18 7 0.25
19 16 0.57
20 5 0.18
ACGTcount: A:0.30, C:0.02, G:0.07, T:0.61
Consensus pattern (18 bp):
ATATTTATATATTTTGTT
Found at i:1087262 original size:11 final size:11
Alignment explanation
Indices: 1087238--1087276 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
1087228 GTTATGTTCA
* *
1087238 TATATTTGTGT
1 TATATTTATAT
1087249 TATATTTATAT
1 TATATTTATAT
*
1087260 TATTTTTATAT
1 TATATTTATAT
1087271 TATATT
1 TATATT
1087277 ATCTTTTATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.67
Consensus pattern (11 bp):
TATATTTATAT
Found at i:1087268 original size:17 final size:17
Alignment explanation
Indices: 1087248--1087285 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 17
1087238 TATATTTGTG
1087248 TTATATTTATATTAT-TT
1 TTATA-TTATATTATCTT
1087265 TTATATTATATTATCTT
1 TTATATTATATTATCTT
1087282 TTAT
1 TTAT
1087286 TTTTTTTGTC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 9 0.45
17 11 0.55
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (17 bp):
TTATATTATATTATCTT
Found at i:1089329 original size:20 final size:19
Alignment explanation
Indices: 1089301--1089348 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
1089291 ATTTCTAGAA
* *
1089301 TTTAGTTTTTGATTATTAAT
1 TTTAATTTTAGATT-TTAAT
*
1089321 TTTAATTTTAGATTTTTAT
1 TTTAATTTTAGATTTTAAT
1089340 TTT-ATTTTA
1 TTTAATTTTA
1089349 TTTATTGTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 6 0.24
19 7 0.28
20 12 0.48
ACGTcount: A:0.25, C:0.00, G:0.06, T:0.69
Consensus pattern (19 bp):
TTTAATTTTAGATTTTAAT
Found at i:1089956 original size:20 final size:20
Alignment explanation
Indices: 1089933--1089970 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
1089923 TATTGTTTGT
1089933 TGATATGATATT-AATTTTTA
1 TGATATGAT-TTCAATTTTTA
1089953 TGATATGATTTCAATTTT
1 TGATATGATTTCAATTTT
1089971 GTCATATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 2 0.12
20 15 0.88
ACGTcount: A:0.32, C:0.03, G:0.11, T:0.55
Consensus pattern (20 bp):
TGATATGATTTCAATTTTTA
Found at i:1090945 original size:10 final size:10
Alignment explanation
Indices: 1090930--1090996 Score: 64
Period size: 10 Copynumber: 6.3 Consensus size: 10
1090920 TTAATTGATA
1090930 CATCACTGTT
1 CATCACTGTT
1090940 CATCACTGTT
1 CATCACTGTT
1090950 CATGCATTACTGTT
1 CAT-C---ACTGTT
1090964 CATCACTGTT
1 CATCACTGTT
* *
1090974 CATGTA-TATT
1 CAT-CACTGTT
1090984 CATCACTGTT
1 CATCACTGTT
1090994 CAT
1 CAT
1090997 GTATCGATAT
Statistics
Matches: 47, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
9 1 0.02
10 34 0.72
11 2 0.04
13 1 0.02
14 9 0.19
ACGTcount: A:0.22, C:0.25, G:0.10, T:0.42
Consensus pattern (10 bp):
CATCACTGTT
Found at i:1090966 original size:24 final size:21
Alignment explanation
Indices: 1090934--1090999 Score: 89
Period size: 24 Copynumber: 3.0 Consensus size: 21
1090924 TTGATACATC
1090934 ACTGTTCATCACTGTTCATGCATT
1 ACTGTTCATCACTGTTCATG---T
1090958 ACTGTTCATCACTGTTCATGT
1 ACTGTTCATCACTGTTCATGT
*
1090979 A-TATTCATCACTGTTCATGT
1 ACTGTTCATCACTGTTCATGT
1090999 A
1 A
1091000 TCGATATAGT
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
20 19 0.46
21 2 0.05
24 20 0.49
ACGTcount: A:0.23, C:0.23, G:0.12, T:0.42
Consensus pattern (21 bp):
ACTGTTCATCACTGTTCATGT
Found at i:1090987 original size:20 final size:20
Alignment explanation
Indices: 1090938--1091000 Score: 81
Period size: 20 Copynumber: 3.0 Consensus size: 20
1090928 TACATCACTG
*
1090938 TTCATCACTGTTCATGCATTACTG
1 TTCATCACTGTTCATG---TA-TA
1090962 TTCATCACTGTTCATGTATA
1 TTCATCACTGTTCATGTATA
1090982 TTCATCACTGTTCATGTAT
1 TTCATCACTGTTCATGTAT
1091001 CGATATAGTG
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
20 20 0.53
21 2 0.05
24 16 0.42
ACGTcount: A:0.22, C:0.22, G:0.11, T:0.44
Consensus pattern (20 bp):
TTCATCACTGTTCATGTATA
Found at i:1095989 original size:38 final size:37
Alignment explanation
Indices: 1095947--1096060 Score: 158
Period size: 38 Copynumber: 3.0 Consensus size: 37
1095937 TCTTTTATAC
*
1095947 TTAATCTATT-TTTAAATGTAAATATAATTTTAATTTTT
1 TTAAT-TATTATTT-AATATAAATATAATTTTAATTTTT
* *
1095985 TTAATTATTATTTAATATAACTATAATTTTAATAGTTT
1 TTAATTATTATTTAATATAAATATAATTTTAAT-TTTT
*
1096023 TTAATTATTATTTAATATAAACATAATTTTAATTTTT
1 TTAATTATTATTTAATATAAATATAATTTTAATTTTT
1096060 T
1 T
1096061 CATATAAATA
Statistics
Matches: 68, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
37 26 0.38
38 42 0.62
ACGTcount: A:0.39, C:0.03, G:0.02, T:0.57
Consensus pattern (37 bp):
TTAATTATTATTTAATATAAATATAATTTTAATTTTT
Found at i:1096147 original size:54 final size:51
Alignment explanation
Indices: 1096020--1096158 Score: 144
Period size: 54 Copynumber: 2.7 Consensus size: 51
1096010 ATTTTAATAG
* *
1096020 TTTTTAA-TTAT-TATTTAATATAAACATAATTTTAA-TTTTTTCATATAAA
1 TTTTTAATTTATAT-TTTATTATAAATATAATTTTAATTTTTTTCATATAAA
* * * *
1096069 TATTTATTTTTTATTTT-TAATAAATATAATTTTAATTATTATTTAACATAT-AA
1 TTTTTAATTTATATTTTATTATAAATATAATTTTAATT-TT-TTT--CATATAAA
1096122 TTTTTAATTTATATTTTATTATAAATATAATTTTAAT
1 TTTTTAATTTATATTTTATTATAAATATAATTTTAAT
1096159 AATTCTTTTA
Statistics
Matches: 72, Mismatches: 10, Indels: 11
0.77 0.11 0.12
Matches are distributed among these distances:
49 20 0.28
50 7 0.10
51 3 0.04
52 3 0.04
53 16 0.22
54 23 0.32
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (51 bp):
TTTTTAATTTATATTTTATTATAAATATAATTTTAATTTTTTTCATATAAA
Found at i:1096251 original size:29 final size:28
Alignment explanation
Indices: 1096021--1096214 Score: 169
Period size: 29 Copynumber: 7.2 Consensus size: 28
1096011 TTTTAATAGT
*
1096021 TTTTAATTATTATTTAATATAAACATAA
1 TTTTAATTATTATTTAATATAAATATAA
* *
1096049 TTTTAA-T-TT-TTTCATATAAATATTTA
1 TTTTAATTATTATTTAATATAAATA-TAA
1096075 TTTT--TTATT-TTT-A-ATAAATATAA
1 TTTTAATTATTATTTAATATAAATATAA
* *
1096098 TTTTAATTATTATTTAACAT--ATA-AT
1 TTTTAATTATTATTTAATATAAATATAA
*
1096123 TTTTAATT-TATATTTTATTATAAATATAA
1 TTTTAATTAT-TA-TTTAATATAAATATAA
* * *
1096152 TTTTAATAATTCTTTTAATATGAATATAA
1 TTTTAATTATT-ATTTAATATAAATATAA
*
1096181 TTTTAAATTATTATTCAATATAAATATAA
1 TTTT-AATTATTATTTAATATAAATATAA
1096210 TTTTA
1 TTTTA
1096215 GTAATTTTCA
Statistics
Matches: 134, Mismatches: 16, Indels: 32
0.74 0.09 0.18
Matches are distributed among these distances:
23 6 0.04
24 8 0.06
25 29 0.22
26 25 0.19
27 2 0.01
28 12 0.09
29 45 0.34
30 7 0.05
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.56
Consensus pattern (28 bp):
TTTTAATTATTATTTAATATAAATATAA
Found at i:1096286 original size:41 final size:40
Alignment explanation
Indices: 1096180--1096306 Score: 132
Period size: 38 Copynumber: 3.1 Consensus size: 40
1096170 TATGAATATA
* * * *
1096180 ATTTTAAATTATTATTCAATATAAATATAATTTTA--GTA
1 ATTTTCAATTATTATTTAATATAAATATAATTTTATTTTT
*
1096218 ATTTTCAATTATTATTTAACATAAATATAATTTTATTTTT
1 ATTTTCAATTATTATTTAATATAAATATAATTTTATTTTT
* * *
1096258 ATTTTTATTTTCTTATTTAATATAAATATAAATTTTAATTATTT
1 ATTTTCA-ATTATTATTTAATATAAATAT-AATTTT-ATT-TTT
1096302 ATTTT
1 ATTTT
1096307 GTACATATAC
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
38 32 0.43
40 7 0.09
41 18 0.24
42 6 0.08
43 3 0.04
44 8 0.11
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.57
Consensus pattern (40 bp):
ATTTTCAATTATTATTTAATATAAATATAATTTTATTTTT
Found at i:1096337 original size:14 final size:15
Alignment explanation
Indices: 1096301--1096341 Score: 50
Period size: 14 Copynumber: 2.7 Consensus size: 15
1096291 TTTAATTATT
1096301 TATTTTGTACATATACA
1 TATTTT-TA-ATATACA
1096318 TA-TTTTAATATA-A
1 TATTTTTAATATACA
1096331 TATTTTTAATA
1 TATTTTTAATA
1096342 ATGATTTTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
13 3 0.13
14 13 0.57
15 2 0.09
16 3 0.13
17 2 0.09
ACGTcount: A:0.39, C:0.05, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTTTAATATACA
Found at i:1096688 original size:32 final size:32
Alignment explanation
Indices: 1096622--1096689 Score: 77
Period size: 32 Copynumber: 2.1 Consensus size: 32
1096612 GCTATTACAA
* *
1096622 ATATAAATTTTAACATATTAATAATTTTTATT
1 ATATAAATTTTAACATAATAATAATTATTATT
*
1096654 ATATAAATTTTGACATAAT-ATACATTCATT-TT
1 ATATAAATTTTAACATAATAATA-ATT-ATTATT
1096686 ATAT
1 ATAT
1096690 TAATGTTATT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
31 3 0.10
32 26 0.84
33 2 0.06
ACGTcount: A:0.43, C:0.06, G:0.01, T:0.50
Consensus pattern (32 bp):
ATATAAATTTTAACATAATAATAATTATTATT
Found at i:1097006 original size:19 final size:21
Alignment explanation
Indices: 1096974--1097021 Score: 55
Period size: 19 Copynumber: 2.3 Consensus size: 21
1096964 TTTTGAAAAT
* *
1096974 AAAATTATAATAATTTTTTA-A
1 AAAATTAT-ATAATTATTGATA
1096995 AAAATTAT-TAATTATTGATA
1 AAAATTATATAATTATTGATA
1097015 AAAATTA
1 AAAATTA
1097022 AAATATTGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 8 0.33
20 8 0.33
21 8 0.33
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (21 bp):
AAAATTATATAATTATTGATA
Found at i:1097206 original size:6 final size:6
Alignment explanation
Indices: 1097197--1097235 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
1097187 TTTTATTTTT
* *
1097197 AATATA AATATA AAAATA AATATT AATAT- AATATA AATA
1 AATATA AATATA AATATA AATATA AATATA AATATA AATA
1097236 AATTAAATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
5 5 0.17
6 24 0.83
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (6 bp):
AATATA
Found at i:1097236 original size:21 final size:23
Alignment explanation
Indices: 1097195--1097238 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 23
1097185 ATTTTTATTT
1097195 TTAATATAAATATAAAAATAAATA
1 TTAATATAAATAT-AAAATAAATA
1097219 TTAATAT-AATAT-AAATAAAT
1 TTAATATAAATATAAAATAAAT
1097239 TAAATTTTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 8 0.40
23 5 0.25
24 7 0.35
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (23 bp):
TTAATATAAATATAAAATAAATA
Found at i:1099722 original size:15 final size:15
Alignment explanation
Indices: 1099702--1099731 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
1099692 TCCGTTTGAT
1099702 CCAACAGATAAAGAC
1 CCAACAGATAAAGAC
1099717 CCAACAGATAAAGAC
1 CCAACAGATAAAGAC
1099732 AGGCAAACTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.27, G:0.13, T:0.07
Consensus pattern (15 bp):
CCAACAGATAAAGAC
Found at i:1101630 original size:20 final size:21
Alignment explanation
Indices: 1101593--1101642 Score: 84
Period size: 20 Copynumber: 2.4 Consensus size: 21
1101583 TCTTACAATT
*
1101593 TGTATCGATACAATAAGTGAA
1 TGTATTGATACAATAAGTGAA
1101614 TGTATTGATAC-ATAAGTGAA
1 TGTATTGATACAATAAGTGAA
1101634 TGTATTGAT
1 TGTATTGAT
1101643 TTATTTTTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
20 18 0.64
21 10 0.36
ACGTcount: A:0.38, C:0.06, G:0.20, T:0.36
Consensus pattern (21 bp):
TGTATTGATACAATAAGTGAA
Found at i:1105313 original size:20 final size:20
Alignment explanation
Indices: 1105288--1105338 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
1105278 TCACAATTTG
*
1105288 TATCGATACATCATTCTTTA
1 TATCGATACATCATTCATTA
*
1105308 TATCGATACATCATTCATTG
1 TATCGATACATCATTCATTA
1105328 TATCGATACAT
1 TATCGATACAT
1105339 TATGGGTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.31, C:0.20, G:0.08, T:0.41
Consensus pattern (20 bp):
TATCGATACATCATTCATTA
Found at i:1107806 original size:79 final size:79
Alignment explanation
Indices: 1107675--1108286 Score: 572
Period size: 79 Copynumber: 7.8 Consensus size: 79
1107665 TTTTCATCTT
* * * *
1107675 GGGGATACTCCAACCTTGATTTTATTTCTAAAACATCGAATTTCCATC-ATCGGGGATACTCCAA
1 GGGGATACTCCAACCCTGGTTTTATTTCTAAAACATCGATTTTCTA-CAATCGGGGATACTCCAA
* *
1107739 CCCTATAATTTCTGA
65 CCCTGTTATTTCTGA
* * * * *
1107754 GGGGACACTCCAACCCTGATTTTATTTTTAAAACATCGATTTTCTACCATCGGGGATACTTCAAC
1 GGGGATACTCCAACCCTGGTTTTATTTCTAAAACATCGATTTTCTACAATCGGGGATACTCCAAC
*
1107819 CCTGTTATTTTTGA
66 CCTGTTATTTCTGA
* * * * **
1107833 GGGGATATTCCAACCCCGATTTTATTTCTAAAACATCGATTTTCCACAATCATGGATACTCCAAT
1 GGGGATACTCCAACCCTGGTTTTATTTCTAAAACATCGATTTTCTACAATCGGGGATACTCCAA-
1107898 CCC-GTTATTT-TCGA
65 CCCTGTTATTTCT-GA
* * * *
1107912 AGGGATACTCCAACCTTGGTTTTATTTCCAAAACA-CTGATTTTCAACAATCGGGGATACTCCAA
1 GGGGATACTCCAACCCTGGTTTTATTTCTAAAACATC-GATTTTCTACAATCGGGGATACTCCAA
1107976 -CCTCGTTATTT-TCGA
65 CCCT-GTTATTTCT-GA
* * * *
1107991 --GGAGACTTCAA-CCTAGGTTTTATTTCTAAAACATCGATTTT-TCACAATCGAGGATACTTCA
1 GGGGATACTCCAACCCT-GGTTTTATTTCTAAAACATCGATTTTCT-ACAATCGGGGATACTCCA
*
1108052 ACCTTGTTATTT-TCGA
64 ACCCTGTTATTTCT-GA
* * * ** *
1108068 GGGGATACTCCAACCCCGGTTTCATTT-TCAAAACACCGATTTT-TCACAATTAGGGATACACCA
1 GGGGATACTCCAACCCTGGTTTTATTTCT-AAAACATCGATTTTCT-ACAATCGGGGATACTCCA
* *
1108131 ACCCCGTTATTTCCGA
64 ACCCTGTTATTTCTGA
** * *
1108147 AAGGATACTCCAA-CCTCGGCTTTATTTCTAAAACATCGATTTTCCACAATCGGGGATACTCCAA
1 GGGGATACTCCAACCCT-GGTTTTATTTCTAAAACATCGATTTTCTACAATCGGGGATACTCCAA
* *
1108211 -CCTCATTATTTTTGA
65 CCCT-GTTATTTCTGA
* * * * *
1108226 GGGAATACTCCAACCCCGGTTTTATTT-TCAAAACATCAATTTTCTACTATTGGGGATACTC
1 GGGGATACTCCAACCCTGGTTTTATTTCT-AAAACATCGATTTTCTACAATCGGGGATACTC
1108287 TAACTCGTTT
Statistics
Matches: 441, Mismatches: 71, Indels: 42
0.80 0.13 0.08
Matches are distributed among these distances:
76 2 0.00
77 62 0.14
78 12 0.03
79 357 0.81
80 8 0.02
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.34
Consensus pattern (79 bp):
GGGGATACTCCAACCCTGGTTTTATTTCTAAAACATCGATTTTCTACAATCGGGGATACTCCAAC
CCTGTTATTTCTGA
Found at i:1107964 original size:158 final size:157
Alignment explanation
Indices: 1107675--1108286 Score: 643
Period size: 158 Copynumber: 3.9 Consensus size: 157
1107665 TTTTCATCTT
* * *
1107675 GGGGATACTCCAACCTTGATTTTATTTCTAAAACATCGAATTTCCATC-ATCGGGGATACTCCAA
1 GGGGATACTCCAACCTCGATTTTATTTCTAAAACATCGATTTTCCA-CAATCAGGGATACTCCAA
* * * * * *
1107739 CC-C-TATAATTTCTGAGGGGACACTCCAACCCTGATTTTATTTTTAAAACA-TCGATTTTCTAC
65 CCTCGT-TATTTTC-GAAGGGATACTCCAACCCCGGTTTTATTTTCAAAACACT-GATTTTC-AC
* * *
1107801 CATCGGGGATACTTCAACCCTGTTATTTTTGA
126 AATCGGGGATACTCCAACCCTGTTATTTTCGA
* * *
1107833 GGGGATATTCCAACCCCGATTTTATTTCTAAAACATCGATTTTCCACAATCATGGATACTCCAAT
1 GGGGATACTCCAACCTCGATTTTATTTCTAAAACATCGATTTTCCACAATCAGGGATACTCCAA-
** *
1107898 CC-CGTTATTTTCGAAGGGATACTCCAACCTTGGTTTTATTTCCAAAACACTGATTTTCAACAAT
65 CCTCGTTATTTTCGAAGGGATACTCCAACCCCGGTTTTATTTTCAAAACACTGATTTTC-ACAAT
1107962 CGGGGATACTCCAA-CCTCGTTATTTTCGA
129 CGGGGATACTCCAACCCT-GTTATTTTCGA
* * * * * *
1107991 --GGAGACTTCAACCTAGGTTTTATTTCTAAAACATCGATTTTTCACAATC-GAGGATACTTCAA
1 GGGGATACTCCAACCTCGATTTTATTTCTAAAACATCGATTTTCCACAATCAG-GGATACTCCAA
* * * *
1108053 CCTTGTTATTTTCGAGGGGATACTCCAACCCCGGTTTCATTTTCAAAACACCGATTTTTCACAAT
65 CCTCGTTATTTTCGAAGGGATACTCCAACCCCGGTTTTATTTTCAAAACACTGA-TTTTCACAAT
** * * *
1108118 TAGGGATACACCAACCCCGTTATTTCCGA
129 CGGGGATACTCCAACCCTGTTATTTTCGA
** ** *
1108147 AAGGATACTCCAACCTCGGCTTTATTTCTAAAACATCGATTTTCCACAATCGGGGATACTCCAAC
1 GGGGATACTCCAACCTCGATTTTATTTCTAAAACATCGATTTTCCACAATCAGGGATACTCCAAC
* * * *
1108212 CTCATTATTTTTG-AGGGAATACTCCAACCCCGGTTTTATTTTCAAAACA-TCAATTTTCTACTA
66 CTCGTTATTTTCGAAGGG-ATACTCCAACCCCGGTTTTATTTTCAAAACACT-GATTTTC-ACAA
*
1108275 TTGGGGATACTC
128 TCGGGGATACTC
1108287 TAACTCGTTT
Statistics
Matches: 385, Mismatches: 54, Indels: 30
0.82 0.12 0.06
Matches are distributed among these distances:
155 2 0.01
156 122 0.32
157 19 0.05
158 230 0.60
159 11 0.03
160 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.34
Consensus pattern (157 bp):
GGGGATACTCCAACCTCGATTTTATTTCTAAAACATCGATTTTCCACAATCAGGGATACTCCAAC
CTCGTTATTTTCGAAGGGATACTCCAACCCCGGTTTTATTTTCAAAACACTGATTTTCACAATCG
GGGATACTCCAACCCTGTTATTTTCGA
Found at i:1108283 original size:314 final size:313
Alignment explanation
Indices: 1107685--1108295 Score: 748
Period size: 314 Copynumber: 1.9 Consensus size: 313
1107675 GGGGATACTC
* *
1107685 CAACCTTGATTTTATTTCTAAAACATCGAATTTCCATCATCGGGGATACTCCAACCCTATAATTT
1 CAACCTAGATTTTATTTCTAAAACATCGAATTTCCATCATCGAGGATACTCCAACCCTATAATTT
* * * * * * **
1107750 CTGAGGGGACACTCCAACCCTGATTTTATTTTTAAAACATCGATTTTCTACCATCGGGGATACTT
66 CTGAGGGGACACTCCAACCCCGATTTCATTTTCAAAACACCGATTTTCTACAATCAGGGATACAC
* ** ** * *
1107815 CAACCCTGTTATTTTTGAGGGGATATTCCAACCCCGATTTTATTTCTAAAACATCGATTTTCCAC
131 CAACCCCGTTATTTCCGAAAGGATACTCCAACCCCGACTTTATTTCTAAAACATCGATTTTCCAC
* * **
1107880 AATCATGGATACTCCAATCCCGTTATTTTCGAAGGGATACTCCAACCTTGGTTTTATTTCCAAAA
196 AATCAGGGATACTCCAATCCCATTATTTTCGAAGGGATACTCCAACCCCGGTTTTATTTCCAAAA
*
1107945 CACTGATTTTCAACAATCGGGGATACTCCAACCTCGTTATTTTCGAGGAGACTT
261 CACTAATTTTCAACAATCGGGGATACTCCAA-CTCGTTATTTTCGAGGAGACTT
* * * * * * *
1107999 CAACCTAGGTTTTATTTCTAAAACATCGATTTTTCA-CAATCGAGGATACTTCAACCTTGTTATT
1 CAACCTAGATTTTATTTCTAAAACATCGAATTTCCATC-ATCGAGGATACTCCAACCCTATAATT
* * *
1108063 T-TCGAGGGGATACTCCAACCCCGGTTTCATTTTCAAAACACCGATTTT-TCACAATTAGGGATA
65 TCT-GAGGGGACACTCCAACCCCGATTTCATTTTCAAAACACCGATTTTCT-ACAATCAGGGATA
* *
1108126 CACCAACCCCGTTATTTCCGAAAGGATACTCCAACCTCGGCTTTATTTCTAAAACATCGATTTTC
128 CACCAACCCCGTTATTTCCGAAAGGATACTCCAACCCCGACTTTATTTCTAAAACATCGATTTTC
* * *
1108191 CACAATCGGGGATACTCCAA-CCTCATTATTTTTG-AGGGAATACTCCAACCCCGGTTTTATTTT
193 CACAATCAGGGATACTCCAATCC-CATTATTTTCGAAGGG-ATACTCCAACCCCGGTTTTATTTC
* * * *
1108254 CAAAACA-TCAATTTTCTACTATTGGGGATACTCTAACTCGTT
256 CAAAACACT-AATTTTCAACAATCGGGGATACTCCAACTCGTT
1108296 TTTATCTCTA
Statistics
Matches: 250, Mismatches: 41, Indels: 13
0.82 0.13 0.04
Matches are distributed among these distances:
313 16 0.06
314 234 0.94
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.34
Consensus pattern (313 bp):
CAACCTAGATTTTATTTCTAAAACATCGAATTTCCATCATCGAGGATACTCCAACCCTATAATTT
CTGAGGGGACACTCCAACCCCGATTTCATTTTCAAAACACCGATTTTCTACAATCAGGGATACAC
CAACCCCGTTATTTCCGAAAGGATACTCCAACCCCGACTTTATTTCTAAAACATCGATTTTCCAC
AATCAGGGATACTCCAATCCCATTATTTTCGAAGGGATACTCCAACCCCGGTTTTATTTCCAAAA
CACTAATTTTCAACAATCGGGGATACTCCAACTCGTTATTTTCGAGGAGACTT
Found at i:1118326 original size:191 final size:191
Alignment explanation
Indices: 1117997--1118384 Score: 641
Period size: 191 Copynumber: 2.0 Consensus size: 191
1117987 GATGATATGA
* * * * *
1117997 TTGCAAAATCACTAAAGGAGAGTGAACATATTGTTGATTTGCAAAAACTCTTCAAATAGCTACGC
1 TTGCCAAATCACTAAAAGAAAGTAAACATATTGTTGATTTGCAAAAACTCTTCAAACAGCTACGC
* *
1118062 AAGTATCGACTAAAGTTAAACCCGACCAAATGCACATTTGGTGTCACTTTGGGCAAATTATTGGG
66 AAGTATCGACTAAAGTTAAACCCGACCAAATGCACATTTGGTGTCACTTCGAGCAAATTATTGGG
*
1118127 CTTCATTGTAAGTGAGAAAGGAATAGAAGTGGATCCTGTTAAGGTCAAGGCCATCCAAAAC
131 CTTCATTGTAAGTGAGAAAGGAATAGAAGTGGATCCTGTCAAGGTCAAGGCCATCCAAAAC
** *
1118188 TTGCCAAATCACTAAAAGAAAGTAAACATATTGTTGATTTGTGAAAACTCTTCAAACAGCTACGT
1 TTGCCAAATCACTAAAAGAAAGTAAACATATTGTTGATTTGCAAAAACTCTTCAAACAGCTACGC
* * *
1118253 AAGTATCGACTAAAGTTGAACCTGGCCAAATGCACATTTGGTGTCACTTCGAGCAAATTATTGGG
66 AAGTATCGACTAAAGTTAAACCCGACCAAATGCACATTTGGTGTCACTTCGAGCAAATTATTGGG
*
1118318 CTTCATTGTAAGTGAGAAAGGAATAGAAGTGGATCCTGTCAAGGTCAAGGCCATCCAGAAC
131 CTTCATTGTAAGTGAGAAAGGAATAGAAGTGGATCCTGTCAAGGTCAAGGCCATCCAAAAC
1118379 TTGCCA
1 TTGCCA
1118385 CCCCTTCGAA
Statistics
Matches: 182, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
191 182 1.00
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (191 bp):
TTGCCAAATCACTAAAAGAAAGTAAACATATTGTTGATTTGCAAAAACTCTTCAAACAGCTACGC
AAGTATCGACTAAAGTTAAACCCGACCAAATGCACATTTGGTGTCACTTCGAGCAAATTATTGGG
CTTCATTGTAAGTGAGAAAGGAATAGAAGTGGATCCTGTCAAGGTCAAGGCCATCCAAAAC
Found at i:1120853 original size:13 final size:13
Alignment explanation
Indices: 1120835--1120859 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1120825 TTCATTTTTT
1120835 TCAAAAAAAAAAC
1 TCAAAAAAAAAAC
1120848 TCAAAAAAAAAA
1 TCAAAAAAAAAA
1120860 AGAAAAAAGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.12, G:0.00, T:0.08
Consensus pattern (13 bp):
TCAAAAAAAAAAC
Found at i:1120860 original size:7 final size:7
Alignment explanation
Indices: 1120850--1120886 Score: 51
Period size: 7 Copynumber: 5.4 Consensus size: 7
1120840 AAAAAAACTC
1120850 AAAAA-A
1 AAAAAGA
1120856 AAAAAGA
1 AAAAAGA
1120863 AAAAAGA
1 AAAAAGA
1120870 AAAAAGA
1 AAAAAGA
1120877 GAAAAA-A
1 -AAAAAGA
1120884 AAA
1 AAA
1120887 TCTGCTTAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
6 8 0.28
7 16 0.55
8 5 0.17
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (7 bp):
AAAAAGA
Found at i:1120867 original size:14 final size:15
Alignment explanation
Indices: 1120850--1120886 Score: 58
Period size: 14 Copynumber: 2.5 Consensus size: 15
1120840 AAAAAAACTC
1120850 AAAAAAAAAAAGA-A
1 AAAAAAAAAAAGAGA
*
1120864 AAAAGAAAAAAGAGA
1 AAAAAAAAAAAGAGA
1120879 AAAAAAAA
1 AAAAAAAA
1120887 TCTGCTTAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
14 12 0.60
15 8 0.40
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAAGAGA
Found at i:1120872 original size:16 final size:16
Alignment explanation
Indices: 1120853--1120883 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
1120843 AAAACTCAAA
1120853 AAAAAAAAGAAAAAAG
1 AAAAAAAAGAAAAAAG
*
1120869 AAAAAAGAGAAAAAA
1 AAAAAAAAGAAAAAA
1120884 AAATCTGCTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (16 bp):
AAAAAAAAGAAAAAAG
Found at i:1121960 original size:61 final size:60
Alignment explanation
Indices: 1121865--1122121 Score: 372
Period size: 61 Copynumber: 4.2 Consensus size: 60
1121855 CATTTCAGTT
* * * *
1121865 CTCAAAGAGCAAGATGCCTTTTCCTTTAAAAGCCCACACAAGTTGGTGGCACCTTTTAATC
1 CTCAAAGAGCAGGA-CCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTC
* * *
1121926 CTCAAAGAGCAGGACACCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTC
1 CTCAAAGAGCAGGAC-CCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTC
*
1121987 CTCAAAGAGCAGGACGC-TTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTC
1 CTCAAAGAGCAGGACCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTC
** * *
1122046 CTCAAAGAAAAGGACGCTTTCTCCTTGCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTC
1 CTCAAAGAGCAGGACCCTTT-TCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTC
1122107 CTCAAAGAGCAGGAC
1 CTCAAAGAGCAGGAC
1122122 AAACTTCATT
Statistics
Matches: 178, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
59 54 0.30
60 3 0.02
61 121 0.68
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (60 bp):
CTCAAAGAGCAGGACCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTC
Found at i:1122097 original size:120 final size:122
Alignment explanation
Indices: 1121865--1122121 Score: 385
Period size: 120 Copynumber: 2.1 Consensus size: 122
1121855 CATTTCAGTT
* *
1121865 CTCAAAGAGCAAGATGCCTTTTCCTTTAAAAGCCCACACAAGTTGGTGGCACCTTTTAATCCTCA
1 CTCAAAGAGCAGGACGCCTTTTCCTTTAAAAGCCCACACAAGTTGGTGGCACCTTTTAATCCTCA
** * **
1121930 AAGAGCAGGACACCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTC
66 AAGAAAAGGACACCTTTTCCTTGCAAAGCCCACACAAGTTGGTGGCACCTTCTAGTC
* *
1121987 CTCAAAGAGCAGGACG-C-TTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCA
1 CTCAAAGAGCAGGACGCCTTTTCCTTTAAAAGCCCACACAAGTTGGTGGCACCTTTTAATCCTCA
* *
1122050 AAGAAAAGGAC-GCTTTCTCCTTGCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTC
66 AAGAAAAGGACACCTTT-TCCTTGCAAAGCCCACACAAGTTGGTGGCACCTTCTAGTC
1122107 CTCAAAGAGCAGGAC
1 CTCAAAGAGCAGGAC
1122122 AAACTTCATT
Statistics
Matches: 123, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
119 4 0.03
120 104 0.85
121 1 0.01
122 14 0.11
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (122 bp):
CTCAAAGAGCAGGACGCCTTTTCCTTTAAAAGCCCACACAAGTTGGTGGCACCTTTTAATCCTCA
AAGAAAAGGACACCTTTTCCTTGCAAAGCCCACACAAGTTGGTGGCACCTTCTAGTC
Found at i:1122163 original size:45 final size:43
Alignment explanation
Indices: 1122098--1122205 Score: 137
Period size: 45 Copynumber: 2.4 Consensus size: 43
1122088 TTGGTGGCAC
*
1122098 CTTTTAGTCCTCAAAGAGCAGGACAAACTTCAT-TTCCTTCTTTT
1 CTTTT-GTCTTCAAAGAGCAGGACAAACTT-ATATTCCTTCTTTT
* * *
1122142 CTCCTTTGTCTTCAAAGAGCAGTACACACTTATATTCGTTCTTTT
1 CT--TTTGTCTTCAAAGAGCAGGACAAACTTATATTCCTTCTTTT
1122187 CTTTTGTCTTCAAAGAGCA
1 CTTTTGTCTTCAAAGAGCA
1122206 AGACGCATTT
Statistics
Matches: 57, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
43 17 0.30
44 4 0.07
45 33 0.58
46 3 0.05
ACGTcount: A:0.24, C:0.24, G:0.12, T:0.40
Consensus pattern (43 bp):
CTTTTGTCTTCAAAGAGCAGGACAAACTTATATTCCTTCTTTT
Found at i:1122234 original size:43 final size:43
Alignment explanation
Indices: 1122135--1122250 Score: 123
Period size: 43 Copynumber: 2.7 Consensus size: 43
1122125 CTTCATTTCC
*
1122135 TTCTTTTCTCC-TTTGTCTTCAAAGAGC-AGTACACACTTATA
1 TTCTTTTTTCCTTTTGTCTTCAAAGAGCAAGTACACACTTATA
* * *
1122176 TTCGTTCTTTT-CTTTTGTCTTCAAAGAGCAAG-ACGCATTTTATT
1 TTC-TT-TTTTCCTTTTGTCTTCAAAGAGCAAGTACACA-CTTATA
* *
1122220 TTCTTTTTTCCTTTTGTCCTCAAATAGCAAG
1 TTCTTTTTTCCTTTTGTCTTCAAAGAGCAAG
1122251 GTGTACTCTT
Statistics
Matches: 63, Mismatches: 6, Indels: 10
0.80 0.08 0.13
Matches are distributed among these distances:
41 3 0.05
42 7 0.11
43 44 0.70
44 9 0.14
ACGTcount: A:0.22, C:0.22, G:0.11, T:0.46
Consensus pattern (43 bp):
TTCTTTTTTCCTTTTGTCTTCAAAGAGCAAGTACACACTTATA
Found at i:1122305 original size:34 final size:35
Alignment explanation
Indices: 1122225--1122321 Score: 126
Period size: 34 Copynumber: 2.7 Consensus size: 35
1122215 TTATTTTCTT
* * *
1122225 TTTTCCTTTTGTCCTCAAATAGCAAGG-TGTACTCTTT
1 TTTTCC-TTTGTCCTCAAAGAG-TAGGATGTACTC-TC
1122262 TTTTCCTTTGTCCTCAAAGAGTAGGATGTACTC-C
1 TTTTCCTTTGTCCTCAAAGAGTAGGATGTACTCTC
1122296 TTTTCCTTTGTCCTCAAAGAGTAGGA
1 TTTTCCTTTGTCCTCAAAGAGTAGGA
1122322 CGCTCCTTCC
Statistics
Matches: 56, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
34 26 0.46
35 3 0.05
36 21 0.38
37 6 0.11
ACGTcount: A:0.21, C:0.22, G:0.16, T:0.41
Consensus pattern (35 bp):
TTTTCCTTTGTCCTCAAAGAGTAGGATGTACTCTC
Found at i:1122333 original size:30 final size:32
Alignment explanation
Indices: 1122263--1122334 Score: 103
Period size: 34 Copynumber: 2.2 Consensus size: 32
1122253 GTACTCTTTT
*
1122263 TTTCCTTTGTCCTCAAAGAGTAGGATGTACTCC
1 TTTCCTTTGTCCTCAAAGAGTAGGACG-ACTCC
1122296 TTTTCCTTTGTCCTCAAAGAGTAGGACG-CTCC
1 -TTTCCTTTGTCCTCAAAGAGTAGGACGACTCC
1122328 -TTCCTTT
1 TTTCCTTT
1122335 TCTTTCCTCT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
30 7 0.19
32 4 0.11
34 26 0.70
ACGTcount: A:0.18, C:0.26, G:0.17, T:0.39
Consensus pattern (32 bp):
TTTCCTTTGTCCTCAAAGAGTAGGACGACTCC
Found at i:1124738 original size:79 final size:79
Alignment explanation
Indices: 1124592--1125170 Score: 608
Period size: 79 Copynumber: 7.4 Consensus size: 79
1124582 TACTCCAACC
* * * * *
1124592 TCGATTTTCCACCATCGGGGATACTCTAACCCCG-T-TTTTCTAAGGGATACTCCAACCCTGATT
1 TCGATTTTCCACAATCGGGGATACTCCAACCTCGTTATTTTCGAGGGGATACTCCAACCCTGATT
1124655 TTATTTCTAAAACA
66 TTATTTCTAAAACA
* * * * * * *
1124669 TCAATTTTCCACCATCGTGGATACTTCAACCTTGTTATTTTCGAGGGGATACTCCAACCTTGATC
1 TCGATTTTCCACAATCGGGGATACTCCAACCTCGTTATTTTCGAGGGGATACTCCAACCCTGATT
*
1124734 TTATTTCTAAAATA
66 TTATTTCTAAAACA
* * * * * *
1124748 -CTAATTTTTCATAATCGGGGATACTCCAACCCCATTATTTTCGAGGGGATACTCCAACCCTGGT
1 TC-GATTTTCCACAATCGGGGATACTCCAACCTCGTTATTTTCGAGGGGATACTCCAACCCTGAT
*
1124812 TTTATTT-TCAAA-A
65 TTTATTTCTAAAACA
* * *
1124825 TACTGATTTTCCACAATTGGGGATACTCCAAACC-CATTATTTTCGAGAGGATACTCCAACCCTG
1 T-C-GATTTTCCACAATCGGGGATACTCC-AACCTCGTTATTTTCGAGGGGATACTCCAACCCTG
* * *
1124889 GTTTTATTTCCAAAATAA
63 ATTTTATTTCTAAAA-CA
* * *
1124907 T-GATTTTCAACAATTGGGGATACTCCAACCTCGTTATTTTCGAGGGGATACTCCAACTCTGATT
1 TCGATTTTCCACAATCGGGGATACTCCAACCTCGTTATTTTCGAGGGGATACTCCAACCCTGATT
* *
1124971 TCATTTCCAAAACA
66 TTATTTCTAAAACA
* * * * * *
1124985 CCGATTTTTCACAATCGGGGATACTCCAACCTTGTTATTTCCGAGGGGATACTCCAACCC-CAGC
1 TCGATTTTCCACAATCGGGGATACTCCAACCTCGTTATTTTCGAGGGGATACTCCAACCCTGA-T
1125049 TTTATTTCTAAAACA
65 TTTATTTCTAAAACA
* * * *
1125064 TCGA---TCCATAATCGGGGATACTTCAACCTCGTTATTTTTGAGGGGATATTCCAACCTCTG-T
1 TCGATTTTCCACAATCGGGGATACTCCAACCTCGTTATTTTCGAGGGGATACTCCAACC-CTGAT
1125125 TTTATTT-TCAAAACA
65 TTTATTTCT-AAAACA
* *
1125140 TCGATTTTTCACCATCGGGGATACTCCAACC
1 TCGATTTTCCACAATCGGGGATACTCCAACC
1125171 CTATTTTTAT
Statistics
Matches: 422, Mismatches: 62, Indels: 34
0.81 0.12 0.07
Matches are distributed among these distances:
75 1 0.00
76 62 0.15
77 30 0.07
78 12 0.03
79 308 0.73
80 7 0.02
82 2 0.00
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.34
Consensus pattern (79 bp):
TCGATTTTCCACAATCGGGGATACTCCAACCTCGTTATTTTCGAGGGGATACTCCAACCCTGATT
TTATTTCTAAAACA
Found at i:1132330 original size:22 final size:20
Alignment explanation
Indices: 1132281--1132336 Score: 76
Period size: 20 Copynumber: 2.7 Consensus size: 20
1132271 AGAAACCCAG
1132281 AATGTATCGATACAATGAGA
1 AATGTATCGATACAATGAGA
* *
1132301 AATGTATCGATACAATTATA
1 AATGTATCGATACAATGAGA
1132321 AGCATGTATCGATACA
1 A--ATGTATCGATACA
1132337 TTTACTTATA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 19 0.59
22 13 0.41
ACGTcount: A:0.43, C:0.12, G:0.16, T:0.29
Consensus pattern (20 bp):
AATGTATCGATACAATGAGA
Found at i:1142788 original size:20 final size:20
Alignment explanation
Indices: 1142763--1142814 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
1142753 TAACTAGATG
1142763 TATCGATACATTGAAAAATA
1 TATCGATACATTGAAAAATA
*
1142783 TATCGATACATTGAAAAATG
1 TATCGATACATTGAAAAATA
1142803 TATCGATACATT
1 TATCGATACATT
1142815 TGGGTTAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.33
Consensus pattern (20 bp):
TATCGATACATTGAAAAATA
Found at i:1144638 original size:110 final size:110
Alignment explanation
Indices: 1144444--1145041 Score: 543
Period size: 110 Copynumber: 5.5 Consensus size: 110
1144434 ACTTATTTCG
* ** * ** *
1144444 GGGCCAATCCCTTAGTGCCC-AACTATTGTGTAATTTACACAAAAAATGAATTA-CCTTACATAA
1 GGGCCAATCCCTTGGTGCCCGAA-TATTACGTAATTAATGCAAAAAATGAATTATCC-TATATAA
* * * * * * *
1144507 AGGGCGTTCATATGCCACTTTATGACTCTAGATGACGACCTATTTTG
64 AGGGCATTCGTACGTCGCTTTATGACTCTAGATGATGACCTATTTTA
** *
1144554 GGGCCAATCTTTTGGTGCCCGAAT-TTACATAATTAATGCAAAAAATAGAATTATCCTATATAAA
1 GGGCCAATCCCTTGGTGCCCGAATATTACGTAATTAATGCAAAAAAT-GAATTATCCTATATAAA
* **
1144618 GGACATTCGTGTGTCGCTTTATGACTCTAGATGATGACCTATTTTA
65 GGGCATTCGTACGTCGCTTTATGACTCTAGATGATGACCTATTTTA
* ** *
1144664 GGACCAATCTTTTGGTGCCCAAAT-TTA-GTAATTAATGCAAAAAAATGAATTATCCTATATAAA
1 GGGCCAATCCCTTGGTGCCCGAATATTACGTAATTAATGC-AAAAAATGAATTATCCTATATAAA
* * * * * **
1144727 TGGCGTTCGTACG-CTACTTTACGACTCTAGACGATGATTTATTTT-
65 GGGCATTCGTACGTC-GCTTTATGACTCTAGATGATGACCTATTTTA
* * *
1144772 GAGGCCAATCCCTTGGTGCCTGAATATTACGTAATTAATGTAAAAAATGAATTATCCTATGTAAA
1 G-GGCCAATCCCTTGGTGCCCGAATATTACGTAATTAATGCAAAAAATGAATTATCCTATATAAA
* * * * ** *
1144837 GGGCGTTCGTACGCCGCTTTACGACTCTAGACGATGATTTATTTCA
65 GGGCATTCGTACGTCGCTTTATGACTCTAGATGATGACCTATTTTA
* * * * * *
1144883 GGGCCAATCCCTTGGTGCCTGAATATTACGTAATTAATAC-AAAAATGAGTTGTCGTATGTAAAG
1 GGGCCAATCCCTTGGTGCCCGAATATTACGTAATTAATGCAAAAAATGAATTATCCTATATAAAG
* ** *
1144947 GGCATTCGTACGTCGCTTTATGACTCTAGATGATAATTTA-TTTC
66 GGCATTCGTACGTCGCTTTATGACTCTAGATGATGACCTATTTTA
* * * * * *
1144991 GGGACCAATCCCTTGATACCCGAAT-CTATGTAATTAACG-TAAAAATGAATT
1 GGG-CCAATCCCTTGGTGCCCGAATATTACGTAATTAATGCAAAAAATGAATT
1145042 TTAAATAGGT
Statistics
Matches: 415, Mismatches: 61, Indels: 26
0.83 0.12 0.05
Matches are distributed among these distances:
108 27 0.07
109 168 0.40
110 204 0.49
111 16 0.04
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (110 bp):
GGGCCAATCCCTTGGTGCCCGAATATTACGTAATTAATGCAAAAAATGAATTATCCTATATAAAG
GGCATTCGTACGTCGCTTTATGACTCTAGATGATGACCTATTTTA
Found at i:1144857 original size:219 final size:217
Alignment explanation
Indices: 1144437--1145041 Score: 608
Period size: 219 Copynumber: 2.8 Consensus size: 217
1144427 TGGAGAGACT
* * * * ** * *
1144437 TATTTCGGGGCCAATCCCTTAGTGCCCAACTATTGTGTAATTTACACAAAAAATGAATTA-CCTT
1 TATTTCAGGACCAATCCCTTGGTGCCCAAATATTACGTAATTAATA-AAAAAATGAATTATCC-T
* * * * * ** **
1144501 ACATAAAGGGCGTTCATATGCCACTTTATGACTCTAGATGACGACCTATTTTGGGGCCAATCTTT
64 ATATAAAGGGCGTTCGTACGCTACTTTATGACTCTAGATGATGATTTATTTT-GGGCCAATCCCT
* * **
1144566 TGGTGCCCGAATTTACATAATTAATGCAAAAAATAGAATTATCCTATATAAAGGACATTCGTGTG
128 TGGTGCCCGAATTTACGTAATTAATGTAAAAAAT-GAATTATCCTATATAAAGGACATTCGTACG
* * *
1144631 TCGCTTTATGACTCTAGATGATGACC
192 CCGCTTTACGACTCTAGACGATGACC
* **
1144657 TATTTTAGGACCAATCTTTTGGTGCCCAAAT-TTA-GTAATTAATGCAAAAAAATGAATTATCCT
1 TATTTCAGGACCAATCCCTTGGTGCCCAAATATTACGTAATTAAT--AAAAAAATGAATTATCCT
* * *
1144720 ATATAAATGGCGTTCGTACGCTACTTTACGACTCTAGACGATGATTTATTTTGAGGCCAATCCCT
64 ATATAAAGGGCGTTCGTACGCTACTTTATGACTCTAGATGATGATTTATTTTG-GGCCAATCCCT
* * * *
1144785 TGGTGCCTGAATATTACGTAATTAATGTAAAAAATGAATTATCCTATGTAAAGGGCGTTCGTACG
128 TGGTGCCCGAAT-TTACGTAATTAATGTAAAAAATGAATTATCCTATATAAAGGACATTCGTACG
**
1144850 CCGCTTTACGACTCTAGACGATGATT
192 CCGCTTTACGACTCTAGACGATGACC
* ** * * * *
1144876 TATTTCAGGGCCAATCCCTTGGTGCCTGAATATTACGTAATTAATACAAAAATGAGTTGTCGTAT
1 TATTTCAGGACCAATCCCTTGGTGCCCAAATATTACGTAATTAATAAAAAAATGAATTATCCTAT
* * * * *
1144941 GTAAAGGGCATTCGTACG-TCGCTTTATGACTCTAGATGATAATTTATTTCGGGACCAATCCCTT
66 ATAAAGGGCGTTCGTACGCT-ACTTTATGACTCTAGATGATGATTTATTTTGGG-CCAATCCCTT
* * * * *
1145005 GATACCCGAATCTATGTAATTAACGT-AAAAATGAATT
129 GGTGCCCGAATTTACGTAATTAATGTAAAAAATGAATT
1145042 TTAAATAGGT
Statistics
Matches: 317, Mismatches: 59, Indels: 21
0.80 0.15 0.05
Matches are distributed among these distances:
217 11 0.03
218 23 0.07
219 224 0.71
220 50 0.16
221 9 0.03
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (217 bp):
TATTTCAGGACCAATCCCTTGGTGCCCAAATATTACGTAATTAATAAAAAAATGAATTATCCTAT
ATAAAGGGCGTTCGTACGCTACTTTATGACTCTAGATGATGATTTATTTTGGGCCAATCCCTTGG
TGCCCGAATTTACGTAATTAATGTAAAAAATGAATTATCCTATATAAAGGACATTCGTACGCCGC
TTTACGACTCTAGACGATGACC
Found at i:1145753 original size:14 final size:14
Alignment explanation
Indices: 1145734--1145781 Score: 69
Period size: 14 Copynumber: 3.4 Consensus size: 14
1145724 TTTTTTTCTC
* *
1145734 CTTCTTATTTCCTT
1 CTTCTTCTTTCTTT
1145748 CTTCTTTCTTTCTTT
1 CTTC-TTCTTTCTTT
1145763 CTTCTTCTTTCTTT
1 CTTCTTCTTTCTTT
1145777 CTTCT
1 CTTCT
1145782 CCCTTTCTTC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
14 19 0.61
15 12 0.39
ACGTcount: A:0.02, C:0.29, G:0.00, T:0.69
Consensus pattern (14 bp):
CTTCTTCTTTCTTT
Found at i:1145753 original size:29 final size:29
Alignment explanation
Indices: 1145719--1145790 Score: 78
Period size: 29 Copynumber: 2.6 Consensus size: 29
1145709 ACCCATTTAT
*
1145719 CTTCTT-TTT-TTTC-TCCTTCTTATTTC
1 CTTCTTCTTTCTTTCTTTCTTCTTATTTC
*
1145745 CTTCTTCTTTCTTTCTTTCTTCTTCTTTC
1 CTTCTTCTTTCTTTCTTTCTTCTTATTTC
* **
1145774 TTTCTTCTCCCTTTCTT
1 CTTCTTCTTTCTTTCTT
1145791 CCTTGGTCTG
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
26 6 0.16
27 3 0.08
28 4 0.11
29 25 0.66
ACGTcount: A:0.01, C:0.31, G:0.00, T:0.68
Consensus pattern (29 bp):
CTTCTTCTTTCTTTCTTTCTTCTTATTTC
Found at i:1145756 original size:18 final size:18
Alignment explanation
Indices: 1145742--1145780 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
1145732 TCCTTCTTAT
1145742 TTCCTTCTTCTTTCTTTC
1 TTCCTTCTTCTTTCTTTC
*
1145760 TTTCTTCTTCTTTCTTTC
1 TTCCTTCTTCTTTCTTTC
1145778 TTC
1 TTC
1145781 TCCCTTTCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (18 bp):
TTCCTTCTTCTTTCTTTC
Found at i:1145767 original size:11 final size:11
Alignment explanation
Indices: 1145745--1145791 Score: 53
Period size: 11 Copynumber: 4.4 Consensus size: 11
1145735 TTCTTATTTC
1145745 CTTC-TTCTTT
1 CTTCTTTCTTT
1145755 CTTTCTTTC-TT
1 C-TTCTTTCTTT
1145766 CTTCTTTCTTT
1 CTTCTTTCTTT
**
1145777 CTTCTCCCTTT
1 CTTCTTTCTTT
1145788 CTTC
1 CTTC
1145792 CTTGGTCTGC
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
10 8 0.25
11 21 0.66
12 3 0.09
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (11 bp):
CTTCTTTCTTT
Found at i:1146730 original size:28 final size:28
Alignment explanation
Indices: 1146686--1146921 Score: 175
Period size: 28 Copynumber: 8.7 Consensus size: 28
1146676 CCTACCAAGC
* *
1146686 GCCAGCGAATATGGGCTTAGACTTATGT
1 GCCAGCGAATGTGGGCTTTGACTTATGT
** *
1146714 GCCAGCGAATGCAGGCTTTGGC-T-TGT
1 GCCAGCGAATGTGGGCTTTGACTTATGT
* * *
1146740 GCCAACGAATGTGGGCTTTGATTTAGGT
1 GCCAGCGAATGTGGGCTTTGACTTATGT
* * * *
1146768 GCCAGCTAGTGTGGGCTTCGACTTAAGT
1 GCCAGCGAATGTGGGCTTTGACTTATGT
* * *
1146796 GCCAGCTAATGTGGG-TTT-ATTTGTGT
1 GCCAGCGAATGTGGGCTTTGACTTATGT
**
1146822 GCCAATGAATGTGGGCTTTGAC---T-T
1 GCCAGCGAATGTGGGCTTTGACTTATGT
* * **
1146846 GCCAACGATTGTGGGCTTTGAC-TCGGAT
1 GCCAGCGAATGTGGGCTTTGACTTATG-T
* * *
1146874 GCCAACTAATGTGAGCTTTGACTTATGT
1 GCCAGCGAATGTGGGCTTTGACTTATGT
*
1146902 GCCAACGAATGTGGGCTTTG
1 GCCAGCGAATGTGGGCTTTG
1146922 TTGTGTGGGC
Statistics
Matches: 163, Mismatches: 36, Indels: 18
0.75 0.17 0.08
Matches are distributed among these distances:
24 21 0.13
25 1 0.01
26 37 0.23
27 7 0.04
28 95 0.58
29 2 0.01
ACGTcount: A:0.20, C:0.18, G:0.31, T:0.31
Consensus pattern (28 bp):
GCCAGCGAATGTGGGCTTTGACTTATGT
Found at i:1147010 original size:26 final size:25
Alignment explanation
Indices: 1146971--1147121 Score: 158
Period size: 26 Copynumber: 5.7 Consensus size: 25
1146961 TAGGCTCGGA
*
1146971 TGCCAACTAATGTGGGCTTTTACTTG
1 TGCCAAC-AATGTGGGCTTTGACTTG
* *
1146997 TGCCAACAACTGTGAGCTTTAACTTGTG
1 TGCCAACAA-TGTGGGCTTTGAC-T-TG
*
1147025 TGCCAACAATTTTGGGCTTTGACTTG
1 TGCCAACAA-TGTGGGCTTTGACTTG
* * *
1147051 TGCCAATAAATGTGGGCCTTGACTTA
1 TGCCAA-CAATGTGGGCTTTGACTTG
1147077 TGCCAACGAATGTGGGCTTTGACTTG
1 TGCCAAC-AATGTGGGCTTTGACTTG
*
1147103 TGCCAACTAATATGGGCTT
1 TGCCAAC-AATGTGGGCTT
1147122 CGTTTTAATA
Statistics
Matches: 105, Mismatches: 15, Indels: 10
0.81 0.12 0.08
Matches are distributed among these distances:
25 2 0.02
26 78 0.74
27 4 0.04
28 21 0.20
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.34
Consensus pattern (25 bp):
TGCCAACAATGTGGGCTTTGACTTG
Found at i:1147029 original size:54 final size:51
Alignment explanation
Indices: 1146970--1147109 Score: 163
Period size: 54 Copynumber: 2.6 Consensus size: 51
1146960 TTAGGCTCGG
* * *
1146970 ATGCCAACTAATGTGGGCTTTTACTTGTGCCAACAACTGTGAGCTTTAACTTGT
1 ATGCCAAC-AATGTGGGCTTTGACTTGTGCCAACAAATGTGAGCCTTAAC-T-T
* * * * *
1147024 GTGCCAACAATTTTGGGCTTTGACTTGTGCCAATAAATGTGGGCCTTGACTT
1 ATGCCAACAA-TGTGGGCTTTGACTTGTGCCAACAAATGTGAGCCTTAACTT
1147076 ATGCCAACGAATGTGGGCTTTGACTTGTGCCAAC
1 ATGCCAAC-AATGTGGGCTTTGACTTGTGCCAAC
1147110 TAATATGGGC
Statistics
Matches: 73, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
52 29 0.40
53 5 0.07
54 39 0.53
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.33
Consensus pattern (51 bp):
ATGCCAACAATGTGGGCTTTGACTTGTGCCAACAAATGTGAGCCTTAACTT
Found at i:1160613 original size:109 final size:109
Alignment explanation
Indices: 1160161--1160657 Score: 473
Period size: 110 Copynumber: 4.5 Consensus size: 109
1160151 TTGGAGAGAC
* * * * ** * **
1160161 TTATTTCGGGGCCAATCCCTTAGTGCCCAAATATTGTGTAATTTACACAAAAAATGAATTA-CCT
1 TTATTTCGAGACCAATCCCTTGGTGCCCGAATATTACGTAATTAATGC-AAAAATGAATTATCC-
** * * * * * * * *
1160225 TACATAAAGGGCGTTCATATGCCACTTTATGACTCTAGACGACGAC
64 TATGTAAAGGGCATTCGTACGTCGCTTTAAGACTCTAGACGATGAT
* * * * ** ** * *
1160271 CTATTTTGGGGCCAATCTTTTGGTGTTCGAA-CTTACATAATTAATGCAAAAAATAGAATTATCC
1 TTATTTCGAGACCAATCCCTTGGTGCCCGAATATTACGTAATTAATGC-AAAAAT-GAATTATCC
* *
1160335 TATATAAAGGGCATTCGTACGTCGCTTTACGACTCTAGACGATGAT
64 TATGTAAAGGGCATTCGTACGTCGCTTTAAGACTCTAGACGATGAT
* * * *
1160381 TTATTTCGGGGCCAATCCTTTGGTGCCCGAATATTACGTAATTAATGTAAAAAATGAATTATCCT
1 TTATTTCGAGACCAATCCCTTGGTGCCCGAATATTACGTAATTAATG-CAAAAATGAATTATCCT
* * *
1160446 ATGTAAAGGCCGTTCGTACGTCGCTTTAAGACTCTAGACAATGAT
65 ATGTAAAGGGCATTCGTACGTCGCTTTAAGACTCTAGACGATGAT
* * *
1160491 TTATTTC-AGGACCAATCCCTTGGTGCCCGAATATTATGTAATTAATGCAAAAATGAGTTGTCCT
1 TTATTTCGA-GACCAATCCCTTGGTGCCCGAATATTACGTAATTAATGCAAAAATGAATTATCCT
* * * *
1160555 ATGTAAAGGGCATTCGTACG-CTGCTTCATGACTCTATACGATAAT
65 ATGTAAAGGGCATTCGTACGTC-GCTTTAAGACTCTAGACGATGAT
* *
1160600 TTATTTCGAGACCAATCCCTTGGTACCCGAAT-CTACGTAATTAATGCAAAAATGAATT
1 TTATTTCGAGACCAATCCCTTGGTGCCCGAATATTACGTAATTAATGCAAAAATGAATT
1160658 TTAAATAGGT
Statistics
Matches: 325, Mismatches: 55, Indels: 16
0.82 0.14 0.04
Matches are distributed among these distances:
108 24 0.07
109 95 0.29
110 185 0.57
111 21 0.06
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
Consensus pattern (109 bp):
TTATTTCGAGACCAATCCCTTGGTGCCCGAATATTACGTAATTAATGCAAAAATGAATTATCCTA
TGTAAAGGGCATTCGTACGTCGCTTTAAGACTCTAGACGATGAT
Found at i:1161361 original size:4 final size:4
Alignment explanation
Indices: 1161344--1161384 Score: 54
Period size: 4 Copynumber: 11.2 Consensus size: 4
1161334 TTTTCCCTTC
1161344 TTCT TTC- TTC- TTCT TTCT TTCT TTC- TT-T TTCT TTCT TTCT T
1 TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT T
1161385 CTCCCTTTCT
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
3 10 0.29
4 24 0.71
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TTCT
Found at i:1161363 original size:14 final size:14
Alignment explanation
Indices: 1161340--1161386 Score: 69
Period size: 14 Copynumber: 3.4 Consensus size: 14
1161330 CTTTTTTTCC
1161340 CTTCTTCTTTC-TT
1 CTTCTTCTTTCTTT
1161353 CTTCTTTCTTTCTTT
1 CTTC-TTCTTTCTTT
*
1161368 CTTTTTCTTTCTTT
1 CTTCTTCTTTCTTT
1161382 CTTCT
1 CTTCT
1161387 CCCTTTCTTC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
13 4 0.13
14 21 0.70
15 5 0.17
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (14 bp):
CTTCTTCTTTCTTT
Found at i:1161367 original size:18 final size:18
Alignment explanation
Indices: 1161344--1161384 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
1161334 TTTTCCCTTC
1161344 TTCTTTCTTCTTCTTTCT
1 TTCTTTCTTCTTCTTTCT
*
1161362 TTCTTTCTTTTTCTTTCT
1 TTCTTTCTTCTTCTTTCT
1161380 TTCTT
1 TTCTT
1161385 CTCCCTTTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (18 bp):
TTCTTTCTTCTTCTTTCT
Found at i:1162202 original size:32 final size:29
Alignment explanation
Indices: 1162159--1162336 Score: 137
Period size: 31 Copynumber: 5.8 Consensus size: 29
1162149 CGACATTAGG
1162159 TTTAGAAAGGTTGCCACCAACTCGTGTAGGC
1 TTTAG-AAGGTTGCCACCAACTCGTGT-GGC
*
1162190 TTTAAAGAAGGTTGCCACCAACTTGTGTGAGC
1 TTT--AGAAGGTTGCCACCAACTCGTGTG-GC
*
1162222 TTTAGAAGGGTTGCCACTAACCTGCGTG-GGC
1 TTTAGAA-GGTTGCCACCAA-CT-CGTGTGGC
1162253 TTTAGAAGGATTGCCACCAACCTGCGTG-GGC
1 TTTAGAAGG-TTGCCACCAA-CT-CGTGTGGC
* * *
1162284 ATTAGAAGAGGTTGCCCCCGACTCGTG-GGC
1 TTTAG-A-AGGTTGCCACCAACTCGTGTGGC
* * *
1162314 TTTTGAAAGGATGCCACTAACTC
1 TTTAG-AAGGTTGCCACCAACTC
1162337 ATGGCTTTTG
Statistics
Matches: 125, Mismatches: 13, Indels: 20
0.79 0.08 0.13
Matches are distributed among these distances:
29 12 0.10
30 18 0.14
31 50 0.40
32 37 0.30
33 8 0.06
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (29 bp):
TTTAGAAGGTTGCCACCAACTCGTGTGGC
Found at i:1162237 original size:31 final size:31
Alignment explanation
Indices: 1162159--1162299 Score: 144
Period size: 31 Copynumber: 4.5 Consensus size: 31
1162149 CGACATTAGG
*
1162159 TTTAGAAAGGTTGCCACCAA-CT-CGTGTAGGC
1 TTTAGAAGGGTTGCCACCAACCTGCGTG-A-GC
* *
1162190 TTTA-AAGAAGGTTGCCACCAACTTGTGTGAGC
1 TTTAGAAG--GGTTGCCACCAACCTGCGTGAGC
* *
1162222 TTTAGAAGGGTTGCCACTAACCTGCGTGGGC
1 TTTAGAAGGGTTGCCACCAACCTGCGTGAGC
* *
1162253 TTTAGAAGGATTGCCACCAACCTGCGTGGGC
1 TTTAGAAGGGTTGCCACCAACCTGCGTGAGC
*
1162284 ATTAGAAGAGGTTGCC
1 TTTAGAAG-GGTTGCC
1162300 CCCGACTCGT
Statistics
Matches: 93, Mismatches: 11, Indels: 11
0.81 0.10 0.10
Matches are distributed among these distances:
30 2 0.02
31 59 0.63
32 24 0.26
33 5 0.05
34 3 0.03
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (31 bp):
TTTAGAAGGGTTGCCACCAACCTGCGTGAGC
Found at i:1162324 original size:62 final size:62
Alignment explanation
Indices: 1162160--1162330 Score: 181
Period size: 63 Copynumber: 2.8 Consensus size: 62
1162150 GACATTAGGT
* * * *
1162160 TTAGAA-AGGTTGCCACCAACTCGTGTAGGCTTTAAAGAAGG-TTGCCACCAACTTGTGTGAGCT
1 TTAGAAGAGGTTGCCACCAACTCGTG--GGCTTTAGA-AAGGATTGCCACCAACCTGCGTGAGCA
* *
1162223 TTAGAAG-GGTTGCCACTAACCTGCGTGGGCTTTAG-AAGGATTGCCACCAACCTGCGTGGGCA
1 TTAGAAGAGGTTGCCACCAA-CT-CGTGGGCTTTAGAAAGGATTGCCACCAACCTGCGTGAGCA
* * *
1162285 TTAGAAGAGGTTGCCCCCGACTCGTGGGCTTTTGAAAGGA-TGCCAC
1 TTAGAAGAGGTTGCCACCAACTCGTGGGCTTTAGAAAGGATTGCCAC
1162331 TAACTCATGG
Statistics
Matches: 92, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
61 21 0.23
62 32 0.35
63 33 0.36
64 2 0.02
65 4 0.04
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.25
Consensus pattern (62 bp):
TTAGAAGAGGTTGCCACCAACTCGTGGGCTTTAGAAAGGATTGCCACCAACCTGCGTGAGCA
Found at i:1162336 original size:29 final size:28
Alignment explanation
Indices: 1162303--1162660 Score: 375
Period size: 28 Copynumber: 12.7 Consensus size: 28
1162293 GGTTGCCCCC
*
1162303 GACTCGTGGGCTTTTGAAAGGATGCCACT
1 GACTTGTGGGC-TTTGAAAGGATGCCACT
* **
1162332 AACTCAT-GGCTTTTGAAAAGG-TGCCACT
1 GACTTGTGGGC-TTTG-AAAGGATGCCACT
* **
1162360 AACTTGTGGATTTTGAAAAGG-TGCCACT
1 GACTTGTGGGCTTTG-AAAGGATGCCACT
* *
1162388 AACTCGTGGGCTTTTGAAAGGATGCCACT
1 GACTTGTGGGC-TTTGAAAGGATGCCACT
* * *
1162417 GACTCGTGGGCTTTGAAAAGATGTCACT
1 GACTTGTGGGCTTTGAAAGGATGCCACT
* *
1162445 GACTTATGGGCTTTG-AAGGGTGCCACT
1 GACTTGTGGGCTTTGAAAGGATGCCACT
*
1162472 GACTTGTGGGCTTTGAAAAGAGTGCCACT
1 GACTTGTGGGCTTTGAAAGGA-TGCCACT
*
1162501 GACTTGTGGGCTTTGAAAAGGGTGCCACT
1 GACTTGTGGGCTTTG-AAAGGATGCCACT
* *
1162530 GACTTGTGGGCTTTGAAAAGATGCCATT
1 GACTTGTGGGCTTTGAAAGGATGCCACT
* * *
1162558 GACTTGTGGGCCTTGAAAAGCTGCCACT
1 GACTTGTGGGCTTTGAAAGGATGCCACT
* * *
1162586 GACTTATGGACTTT-AAAGGGTGCCACT
1 GACTTGTGGGCTTTGAAAGGATGCCACT
*
1162613 GACTTGTGGGCTTTGAAATGATGCCACT
1 GACTTGTGGGCTTTGAAAGGATGCCACT
* *
1162641 AACTTGTGGGCTTTAAAAGG
1 GACTTGTGGGCTTTGAAAGG
1162661 TGTTGTATTG
Statistics
Matches: 281, Mismatches: 40, Indels: 17
0.83 0.12 0.05
Matches are distributed among these distances:
27 46 0.16
28 155 0.55
29 76 0.27
30 4 0.01
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (28 bp):
GACTTGTGGGCTTTGAAAGGATGCCACT
Found at i:1162346 original size:28 final size:29
Alignment explanation
Indices: 1162163--1162654 Score: 276
Period size: 28 Copynumber: 17.0 Consensus size: 29
1162153 ATTAGGTTTA
* * *
1162163 GAAAGGTTGCCACCAACTCGTGTAGGCTTTA
1 GAAAGGATGCCACTAACTCGTG--GGCTTTT
* * * * *
1162194 AAGAAGGTTGCCACCAACTTGTGTGAGCTTTA
1 GA-AAGGATGCCACTAACTCGTG-G-GCTTTT
* * *
1162226 GAAGGGTTGCCACTAACCTGCGTGGGCTTTA
1 GAAAGGATGCCACTAA-CT-CGTGGGCTTTT
* * *
1162257 G-AAGGATTGCCACCAACCTGCGTGGGCATTA
1 GAAAGGA-TGCCACTAA-CT-CGTGGGCTTTT
* * **
1162288 GAAGAGGTTGCCCCCGACTCGTGGGCTTTT
1 GAA-AGGATGCCACTAACTCGTGGGCTTTT
*
1162318 GAAAGGATGCCACTAACTCAT-GGCTTTT
1 GAAAGGATGCCACTAACTCGTGGGCTTTT
* *
1162346 GAAAAGG-TGCCACTAACTTGT-GGATTTT
1 G-AAAGGATGCCACTAACTCGTGGGCTTTT
1162374 GAAAAGG-TGCCACTAACTCGTGGGCTTTT
1 G-AAAGGATGCCACTAACTCGTGGGCTTTT
*
1162403 GAAAGGATGCCACTGACTCGTGGGC-TTT
1 GAAAGGATGCCACTAACTCGTGGGCTTTT
* * * **
1162431 GAAAAGATGTCACTGACTTATGGGC-TTT
1 GAAAGGATGCCACTAACTCGTGGGCTTTT
* * *
1162459 G-AAGGGTGCCACTGACTTGTGGGC-TTT
1 GAAAGGATGCCACTAACTCGTGGGCTTTT
* * *
1162486 GAAAAGAGTGCCACTGACTTGTGGGC-TTT
1 GAAAGGA-TGCCACTAACTCGTGGGCTTTT
* * *
1162515 GAAAAGGGTGCCACTGACTTGTGGGC-TTT
1 G-AAAGGATGCCACTAACTCGTGGGCTTTT
* * * * *
1162544 GAAAAGATGCCATTGACTTGTGGGC-CTT
1 GAAAGGATGCCACTAACTCGTGGGCTTTT
* * * ** *
1162572 GAAAAGCTGCCACTGACTTATGGAC-TTT
1 GAAAGGATGCCACTAACTCGTGGGCTTTT
* * *
1162600 -AAAGGGTGCCACTGACTTGTGGGC-TTT
1 GAAAGGATGCCACTAACTCGTGGGCTTTT
* *
1162627 GAAATGATGCCACTAACTTGTGGGCTTT
1 GAAAGGATGCCACTAACTCGTGGGCTTT
1162655 AAAAGGTGTT
Statistics
Matches: 391, Mismatches: 55, Indels: 32
0.82 0.12 0.07
Matches are distributed among these distances:
27 46 0.12
28 149 0.38
29 88 0.23
30 19 0.05
31 46 0.12
32 37 0.09
33 6 0.02
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.28
Consensus pattern (29 bp):
GAAAGGATGCCACTAACTCGTGGGCTTTT
Found at i:1162497 original size:141 final size:140
Alignment explanation
Indices: 1162343--1162662 Score: 475
Period size: 141 Copynumber: 2.3 Consensus size: 140
1162333 ACTCATGGCT
**
1162343 TTTGAAAAG-GTGCCACTAACTTGTGGATTTTGAAAAGGTGCCACTAACTCGTGGGCTTTTGAAA
1 TTTGAAAAGAGTGCCACTAACTTGTGGGCTTTGAAAAGGTGCCACTAACTCGTGGGC-TTTGAAA
* * * * *
1162407 GGATGCCACTGACTCGTGGGCTTTGAAAAGATGTCACTGACTTATGGGCTTTGAAGGGTGCCACT
65 AGATGCCACTGACTCGTGGGCCTTGAAAAGATGCCACTGACTTATGGACTTTAAAGGGTGCCACT
1162472 GACTTGTGGGC
130 GACTTGTGGGC
* * *
1162483 TTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTGAAA
1 TTTGAAAAGAGTGCCACTAACTTGTGGGCTTTGAAAA-GGTGCCACTAACTCGTGGGCTTTGAAA
* * *
1162548 AGATGCCATTGACTTGTGGGCCTTGAAAAGCTGCCACTGACTTATGGACTTTAAAGGGTGCCACT
65 AGATGCCACTGACTCGTGGGCCTTGAAAAGATGCCACTGACTTATGGACTTTAAAGGGTGCCACT
1162613 GACTTGTGGGC
130 GACTTGTGGGC
*
1162624 TTTGAAATGA-TGCCACTAACTTGTGGGCTTT-AAAAGGTG
1 TTTGAAAAGAGTGCCACTAACTTGTGGGCTTTGAAAAGGTG
1162663 TTGTATTGAC
Statistics
Matches: 163, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
138 4 0.02
139 4 0.02
140 29 0.18
141 108 0.66
142 18 0.11
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.29
Consensus pattern (140 bp):
TTTGAAAAGAGTGCCACTAACTTGTGGGCTTTGAAAAGGTGCCACTAACTCGTGGGCTTTGAAAA
GATGCCACTGACTCGTGGGCCTTGAAAAGATGCCACTGACTTATGGACTTTAAAGGGTGCCACTG
ACTTGTGGGC
Found at i:1166753 original size:33 final size:33
Alignment explanation
Indices: 1166715--1166781 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
1166705 AAAATTTCCA
* ***
1166715 AATGTATTGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
1166748 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
1166781 A
1 A
1166782 TTTCCTTGGC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.43, C:0.15, G:0.15, T:0.27
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:1166754 original size:13 final size:13
Alignment explanation
Indices: 1166736--1166761 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1166726 ACAAAGATCC
1166736 ATGTATCGATACA
1 ATGTATCGATACA
1166749 ATGTATCGATACA
1 ATGTATCGATACA
1166762 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1166845 original size:32 final size:32
Alignment explanation
Indices: 1166804--1166866 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
1166794 TAGCTAATTA
* *
1166804 TGTATCGATACAATACTTATTTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
1166836 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
1166867 AATTGTTGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.37
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:1166860 original size:19 final size:19
Alignment explanation
Indices: 1166801--1166868 Score: 76
Period size: 19 Copynumber: 3.9 Consensus size: 19
1166791 CAGTAGCTAA
*
1166801 TTATGTATCGATACAATAC
1 TTATGTATCGATACAAAAC
*
1166820 TTATTTATCGATAC---A-
1 TTATGTATCGATACAAAAC
1166835 -T-TGTATCGATACAAAAC
1 TTATGTATCGATACAAAAC
1166852 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
1166869 TTGTTGAATT
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
13 10 0.24
14 1 0.02
16 2 0.05
18 1 0.02
19 27 0.66
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.37
Consensus pattern (19 bp):
TTATGTATCGATACAAAAC
Found at i:1166930 original size:21 final size:21
Alignment explanation
Indices: 1166904--1167001 Score: 144
Period size: 21 Copynumber: 4.7 Consensus size: 21
1166894 GTTGGGACCC
* *
1166904 TGTATCGATACATTTGTA-GAA
1 TGTATCGATACA-TTCTACAAA
*
1166925 TGTATCGATACATTCCACAAA
1 TGTATCGATACATTCTACAAA
*
1166946 TGTATCGATACATTATACAAA
1 TGTATCGATACATTCTACAAA
1166967 TGTATCGATACATTCTACAAA
1 TGTATCGATACATTCTACAAA
1166988 TGTATCGATACATT
1 TGTATCGATACATT
1167002 TGAAATTTTT
Statistics
Matches: 70, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
20 3 0.04
21 67 0.96
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (21 bp):
TGTATCGATACATTCTACAAA
Found at i:1171777 original size:27 final size:27
Alignment explanation
Indices: 1171738--1171807 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
1171728 TTGAAAAACA
* *
1171738 GGGTTTGACTATCCCCTCGGAGGAATG
1 GGGTTAGAGTATCCCCTCGGAGGAATG
1171765 GGGTTAGAGTATCCCCTCGGAGGAATG
1 GGGTTAGAGTATCCCCTCGGAGGAATG
1171792 GGGTTAGAGTATCCCC
1 GGGTTAGAGTATCCCC
1171808 GATAAATAGA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.20, C:0.21, G:0.34, T:0.24
Consensus pattern (27 bp):
GGGTTAGAGTATCCCCTCGGAGGAATG
Found at i:1174073 original size:20 final size:20
Alignment explanation
Indices: 1174048--1174098 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
1174038 AGATAGAATT
*
1174048 TATCGACACATTGAAAAATG
1 TATCGATACATTGAAAAATG
* * *
1174068 TATCGATACATTTATACATG
1 TATCGATACATTGAAAAATG
1174088 TATCGATACAT
1 TATCGATACAT
1174099 CTGGGTAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.39, C:0.16, G:0.12, T:0.33
Consensus pattern (20 bp):
TATCGATACATTGAAAAATG
Found at i:1175098 original size:28 final size:28
Alignment explanation
Indices: 1175011--1175497 Score: 482
Period size: 28 Copynumber: 17.0 Consensus size: 28
1175001 TTTTTTAAAA
* *
1175011 AAAAGGTGCCACTAACTTGTGTGGGCTTTC
1 AAAAGGTGCCACTGAC-T-TGTGGGCTTTG
*
1175041 AAAAGAGTTGCCACCGACTTGTGTGAGCTTTG
1 AAAAG-G-TGCCACTGACTTGTG-G-GCTTTG
*
1175073 AAAAGGTGTCACTGACTTGTGGGCTTT-
1 AAAAGGTGCCACTGACTTGTGGGCTTTG
*
1175100 AAAAGGGTATGCCACTGACTTGTAGGCTTTG
1 AAAA-GG--TGCCACTGACTTGTGGGCTTTG
* *
1175131 AAAGGGTGCCACTGACTTGTAGGCTTTG
1 AAAAGGTGCCACTGACTTGTGGGCTTTG
** *
1175159 AAGGGGTACCACTGACTTGTGGGCTTTG
1 AAAAGGTGCCACTGACTTGTGGGCTTTG
* *
1175187 AAAAGGTGCCACTAATTTGTGTGGGCTTT-
1 AAAAGGTGCCACTGA-CT-TGTGGGCTTTG
* *
1175216 TAAAGGATGCCACTCACTTGTGGGCTTTG
1 AAAAGG-TGCCACTGACTTGTGGGCTTTG
* * *
1175245 AAAGGGCGCCACTGACTTGTGGCCTTTG
1 AAAAGGTGCCACTGACTTGTGGGCTTTG
* * *
1175273 GAAGGGTGCCACTGATTTGTGGGCTTTG
1 AAAAGGTGCCACTGACTTGTGGGCTTTG
* * *
1175301 -AAAGGATGCCATTAACTTGTGGTCTTTTG
1 AAAAGG-TGCCACTGACTTGTGGGC-TTTG
* *
1175330 AAGAA-ATGCCACTAACTTGTGGGCTTTG
1 AA-AAGGTGCCACTGACTTGTGGGCTTTG
*
1175358 -AAAGGATGCCACTAACTTGTGGGCTTTG
1 AAAAGG-TGCCACTGACTTGTGGGCTTTG
*
1175386 -AAAGGATGCCACTAACTTGTGGGCTTTG
1 AAAAGG-TGCCACTGACTTGTGGGCTTTG
* *
1175414 AAAGGGTGCCATTGACTTGTGGGCTTTG
1 AAAAGGTGCCACTGACTTGTGGGCTTTG
*
1175442 AAAAGATGCCACTGACTTGTGGGCTTTG
1 AAAAGGTGCCACTGACTTGTGGGCTTTG
* * *
1175470 AAAAGATACCACTGACCTGTGGGCTTTG
1 AAAAGGTGCCACTGACTTGTGGGCTTTG
1175498 GAGAGATGAA
Statistics
Matches: 393, Mismatches: 45, Indels: 40
0.82 0.09 0.08
Matches are distributed among these distances:
26 2 0.01
27 9 0.02
28 257 0.65
29 36 0.09
30 62 0.16
31 9 0.02
32 18 0.05
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.30
Consensus pattern (28 bp):
AAAAGGTGCCACTGACTTGTGGGCTTTG
Found at i:1176743 original size:1 final size:1
Alignment explanation
Indices: 1176724--1176801 Score: 57
Period size: 1 Copynumber: 78.0 Consensus size: 1
1176714 TCTGGACCCC
* * * * ** ** * *
1176724 TTTTTTGTTTGTTTGTTTTTTTTTTGTTTTTTTTTTTTTTTTTTGCTTTTGGTTTTTTCTGTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
*
1176789 TTTTATTTTTTTT
1 TTTTTTTTTTTTT
1176802 GTACGAAGGA
Statistics
Matches: 58, Mismatches: 19, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 58 1.00
ACGTcount: A:0.01, C:0.03, G:0.10, T:0.86
Consensus pattern (1 bp):
T
Found at i:1176748 original size:19 final size:18
Alignment explanation
Indices: 1176724--1176803 Score: 78
Period size: 18 Copynumber: 4.4 Consensus size: 18
1176714 TCTGGACCCC
1176724 TTTTTTGTTTGTTTGTTTT
1 TTTTTTGTTT-TTTGTTTT
1176743 TTTTTTGTTTTTT-TTTT
1 TTTTTTGTTTTTTGTTTT
*
1176760 TTTTTT-TTGCTTTTG-GTT
1 TTTTTTGTT--TTTTGTTTT
*
1176778 TTTTCTGTTTTTT-TTATT
1 TTTTTTGTTTTTTGTT-TT
1176796 TTTTTTGT
1 TTTTTTGT
1176804 ACGAAGGATG
Statistics
Matches: 51, Mismatches: 4, Indels: 13
0.75 0.06 0.19
Matches are distributed among these distances:
16 2 0.04
17 14 0.27
18 23 0.45
19 12 0.24
ACGTcount: A:0.01, C:0.03, G:0.11, T:0.85
Consensus pattern (18 bp):
TTTTTTGTTTTTTGTTTT
Found at i:1190532 original size:20 final size:20
Alignment explanation
Indices: 1190503--1190540 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
1190493 GTAAAAAGAC
*
1190503 AGAATTTATCGACACATTGA
1 AGAATGTATCGACACATTGA
*
1190523 AGAATGTATCGATACATT
1 AGAATGTATCGACACATT
1190541 CATACATGTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.32
Consensus pattern (20 bp):
AGAATGTATCGACACATTGA
Found at i:1191340 original size:2 final size:2
Alignment explanation
Indices: 1191333--1191359 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
1191323 ACCCGCTTGT
1191333 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1191360 GTTTATTTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1191610 original size:2 final size:2
Alignment explanation
Indices: 1191603--1191640 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
1191593 TACTTCTAAC
1191603 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1191641 TAAGAGTTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1191784 original size:14 final size:14
Alignment explanation
Indices: 1191765--1191809 Score: 72
Period size: 14 Copynumber: 3.2 Consensus size: 14
1191755 TAATTTTTTA
*
1191765 TATATTTAAAAATT
1 TATATTTAAATATT
*
1191779 TATATTTATATATT
1 TATATTTAAATATT
1191793 TATATTTAAATATT
1 TATATTTAAATATT
1191807 TAT
1 TAT
1191810 TAAATATAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (14 bp):
TATATTTAAATATT
Found at i:1191880 original size:14 final size:14
Alignment explanation
Indices: 1191811--1191880 Score: 54
Period size: 14 Copynumber: 4.9 Consensus size: 14
1191801 AATATTTATT
1191811 AAATATAAATGTT-AA
1 AAATA-AAAT-TTAAA
*
1191826 AAATAAAATTTTAA
1 AAATAAAATTTAAA
*
1191840 AAA-AAAATTCAAA
1 AAATAAAATTTAAA
**
1191853 TAATATAAGCTTTAAA
1 -AA-ATAAAATTTAAA
1191869 AAATAAAATTTA
1 AAATAAAATTTA
1191881 TTAAAAGCAG
Statistics
Matches: 44, Mismatches: 7, Indels: 9
0.73 0.12 0.15
Matches are distributed among these distances:
13 10 0.23
14 19 0.43
15 8 0.18
16 7 0.16
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (14 bp):
AAATAAAATTTAAA
Found at i:1193367 original size:19 final size:18
Alignment explanation
Indices: 1193311--1193367 Score: 57
Period size: 19 Copynumber: 3.1 Consensus size: 18
1193301 AAAATTACTA
1193311 AAATTAAAATTTTA-AA-
1 AAATTAAAATTTTATAAT
1193327 AAATTAATAAATATTTAT-AT
1 AAATT-A-AAAT-TTTATAAT
1193347 AAATATAAAATTTTATAAT
1 AAAT-TAAAATTTTATAAT
1193366 AA
1 AA
1193368 TTTTATTTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 11
0.76 0.00 0.24
Matches are distributed among these distances:
16 5 0.15
17 1 0.03
18 9 0.26
19 13 0.38
20 5 0.15
21 1 0.03
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
AAATTAAAATTTTATAAT
Found at i:1193719 original size:15 final size:15
Alignment explanation
Indices: 1193694--1193727 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
1193684 TTAGTTACAT
1193694 TAAAAAAATTA-GAA
1 TAAAAAAATTATGAA
1193708 TAAAACAAATTATGAA
1 TAAAA-AAATTATGAA
1193724 TAAA
1 TAAA
1193728 CTCTTAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 5 0.28
15 6 0.33
16 7 0.39
ACGTcount: A:0.68, C:0.03, G:0.06, T:0.24
Consensus pattern (15 bp):
TAAAAAAATTATGAA
Found at i:1194259 original size:23 final size:24
Alignment explanation
Indices: 1194215--1194259 Score: 58
Period size: 23 Copynumber: 1.9 Consensus size: 24
1194205 AATTATTTAA
*
1194215 ATTATTTTATTATTTTATAATACT
1 ATTATTTTATTATTTTAGAATACT
1194239 ATTA-TTTATT-TTTATAGAATA
1 ATTATTTTATTATTT-TAGAATA
1194260 AGTAACTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 3 0.16
23 12 0.63
24 4 0.21
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (24 bp):
ATTATTTTATTATTTTAGAATACT
Found at i:1194866 original size:38 final size:40
Alignment explanation
Indices: 1194811--1194889 Score: 117
Period size: 38 Copynumber: 2.0 Consensus size: 40
1194801 GGAGTAGAAT
* * *
1194811 AGTAGAAATAAAATAAATTTTGAATGTGCTTGGTCAAAAA
1 AGTAGAAATAAAATAAATTTTGAATGCGCTTAGTAAAAAA
1194851 AGTA-AAA-AAAATAAATTTTGAATGCGCTTAGTAAAAAA
1 AGTAGAAATAAAATAAATTTTGAATGCGCTTAGTAAAAAA
1194889 A
1 A
1194890 AAAAGTAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
38 29 0.81
39 3 0.08
40 4 0.11
ACGTcount: A:0.52, C:0.05, G:0.15, T:0.28
Consensus pattern (40 bp):
AGTAGAAATAAAATAAATTTTGAATGCGCTTAGTAAAAAA
Found at i:1196631 original size:20 final size:20
Alignment explanation
Indices: 1196592--1196631 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
1196582 TTATATTTTT
*
1196592 ATATTATAATTATATTTAAA
1 ATATTATAATTATATATAAA
1196612 ATATTATATATT-TATATAAA
1 ATATTATA-ATTATATATAAA
1196632 TTTTAATGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 15 0.83
21 3 0.17
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
ATATTATAATTATATATAAA
Found at i:1200242 original size:2 final size:2
Alignment explanation
Indices: 1200235--1200275 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
1200225 TTATACATAC
1200235 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1200276 AAGAAAGCTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:1202122 original size:198 final size:203
Alignment explanation
Indices: 1201766--1202168 Score: 543
Period size: 198 Copynumber: 2.0 Consensus size: 203
1201756 TTTAAAATTC
* *
1201766 ACCTCACATCATGAGTCTTCAATGAAAACTATTAGTTCATATGAAGAGTTTCTATCGCCGAATTT
1 ACCTCACATCACGAGTCTCCAATGAAAACTATTAGTTCATATGAAGAGTTTCTATCGCCGAATTT
* * *
1201831 AATATTTTATGAATATATATATATTATTGTATACTAATCATTAGTTTTAATATTAATTAATTAGT
66 AATATTTTATG-A-ATATATATATTATCGTATACTAATAATTAGTTTTAATATTAATTAATTAAT
* * *
1201896 TTTATTGTTATTTAAATATTAGTAAATTTTTAAAATTCTTTTCA-CTATTAGAGAGTAATTCT-A
129 TTTATTATTATTTAAATATTAATAAATTTTTAAAATTCTTTTCATC-ATTAAAGAGTAATTCTAA
1201959 AAAATCCACCT
193 AAAATCCACCT
* * * * *
1201970 ACCTCACATCACGAGTCTCCAATGGAAACTATTCA-TTCATGTGAAGAG-TTCTATTGTCGGATT
1 ACCTCACATCACGAGTCTCCAATGAAAACTATT-AGTTCATATGAAGAGTTTCTATCGCCGAATT
* * *
1202033 TAATATTTTTATG-A-ATATATA-T-TCGTATTCTAATAATTATTTTTAATATTTATTAATTAAT
65 TAATA-TTTTATGAATATATATATTATCGTATACTAATAATTAGTTTTAATATTAATTAATTAAT
* *
1202094 TTTATTATTATTTAAATATTAATAAATTTTTAGAATTCTTTTCATCATTAAAGATTAATTCTAAA
129 TTTATTATTATTTAAATATTAATAAATTTTTAAAATTCTTTTCATCATTAAAGAGTAATTCTAAA
1202159 AAATCCACCT
194 AAATCCACCT
1202169 TACTTCAAAA
Statistics
Matches: 177, Mismatches: 18, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
198 88 0.50
199 14 0.08
200 7 0.04
201 1 0.01
203 17 0.10
204 49 0.28
205 1 0.01
ACGTcount: A:0.36, C:0.12, G:0.08, T:0.44
Consensus pattern (203 bp):
ACCTCACATCACGAGTCTCCAATGAAAACTATTAGTTCATATGAAGAGTTTCTATCGCCGAATTT
AATATTTTATGAATATATATATTATCGTATACTAATAATTAGTTTTAATATTAATTAATTAATTT
TATTATTATTTAAATATTAATAAATTTTTAAAATTCTTTTCATCATTAAAGAGTAATTCTAAAAA
ATCCACCT
Found at i:1202482 original size:15 final size:16
Alignment explanation
Indices: 1202456--1202486 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
1202446 GTTCTAATTG
1202456 ATAGATAAATAAATAA
1 ATAGATAAATAAATAA
1202472 ATAGA-AAATAAATAA
1 ATAGATAAATAAATAA
1202487 TTAATATAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.23
Consensus pattern (16 bp):
ATAGATAAATAAATAA
Found at i:1202510 original size:18 final size:18
Alignment explanation
Indices: 1202489--1202530 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
1202479 ATAAATAATT
*
1202489 AATATAACAATA-AAATCA
1 AATA-AACAATATAAAACA
*
1202507 AATAAAGAATATAAAACA
1 AATAAACAATATAAAACA
1202525 AATAAA
1 AATAAA
1202531 TACCTAAACA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.71, C:0.07, G:0.02, T:0.19
Consensus pattern (18 bp):
AATAAACAATATAAAACA
Found at i:1204419 original size:20 final size:19
Alignment explanation
Indices: 1204394--1204453 Score: 68
Period size: 21 Copynumber: 3.0 Consensus size: 19
1204384 TACAAGACCA
*
1204394 TATTGTATCGAAACAATGCT
1 TATTGTATCGATACAATG-T
1204414 TATTGTATC-AGTACAATGT
1 TATTGTATCGA-TACAATGT
1204433 TCCATTGTATCGATACAATGT
1 T--ATTGTATCGATACAATGT
1204454 CGTGTTTTGC
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
19 3 0.09
20 15 0.43
21 16 0.46
22 1 0.03
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (19 bp):
TATTGTATCGATACAATGT
Found at i:1205978 original size:13 final size:13
Alignment explanation
Indices: 1205960--1205985 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1205950 CAATTTTTTG
1205960 TGTATCGATACAT
1 TGTATCGATACAT
1205973 TGTATCGATACAT
1 TGTATCGATACAT
1205986 ACTTTGGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1205982 original size:33 final size:33
Alignment explanation
Indices: 1205940--1206004 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
1205930 TACAAGCCAA
* *
1205940 TGTATCGATACA-ATTTTTTGTGTATCGATACAT
1 TGTATCGATACATA-CTTTGGTGTATCGATACAT
1205973 TGTATCGATACATACTTTGGTGTATCGATACA
1 TGTATCGATACATACTTTGGTGTATCGATACA
1206005 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 28 0.97
34 1 0.03
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.42
Consensus pattern (33 bp):
TGTATCGATACATACTTTGGTGTATCGATACAT
Found at i:1214197 original size:13 final size:13
Alignment explanation
Indices: 1214179--1214204 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1214169 CAATTTTTTG
1214179 TGTATCGATACAT
1 TGTATCGATACAT
1214192 TGTATCGATACAT
1 TGTATCGATACAT
1214205 ACTTTGGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1214201 original size:33 final size:33
Alignment explanation
Indices: 1214159--1214223 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
1214149 TACAAGCCAA
* *
1214159 TGTATCGATACA-ATTTTTTGTGTATCGATACAT
1 TGTATCGATACATA-CTTTGGTGTATCGATACAT
1214192 TGTATCGATACATACTTTGGTGTATCGATACA
1 TGTATCGATACATACTTTGGTGTATCGATACA
1214224 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 28 0.97
34 1 0.03
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.42
Consensus pattern (33 bp):
TGTATCGATACATACTTTGGTGTATCGATACAT
Found at i:1218888 original size:476 final size:476
Alignment explanation
Indices: 1217982--1225560 Score: 8372
Period size: 476 Copynumber: 16.0 Consensus size: 476
1217972 TTTTGGGTCA
* * * *
1217982 TTTGATTCTATAAAAAATGGTGGAAAGAAAAGATTTTCTTGCGACACCAAAGCATCAATGTCATG
1 TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATG
* * * * ** * * * * *
1218047 TATCTTAATGAAGGGAATGTGCTTTTGGTTTGCAATCTTGTAATGAATAGAGACTATTATGACAA
66 TGTCCTAATAAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAA
* * * * *
1218112 TCGATGCTTCTCTTATTTAAGGGATTAACTTTAATTTAAAGGAAAATAGGGCAAGGAAAAGATTT
131 TCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT
* * * * *
1218177 CCATGGAAAAGAAAATCATCAATATCATTTATCCTCACGAGAAGAATGTGTTTATAGTGCCTGAT
196 CTATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTATAGTGCCTAAT
* **
1218242 CACAAAATGAATGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCAAAAACTTAGACT
261 CACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAACTTAGACT
** * * * **
1218307 TTACAAAAATTGGCAGGAAAAATGCCTTTCTTTCGAAACCAAAACATCCATATCATGTATTATAA
326 TTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAA
* * * ** * * *
1218372 TGTGAAGACTTTGTTTATGGTGCCTATTTTTGAGAAGAATGGAGATTAGTATGAGTATTCATATT
391 TGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTT
* *
1218437 TGTCTTATTTAAAAGACATAC
456 TGTCTTATTTAAGAGACAAAC
* * * * * *
1218458 TTTGATTCTATCAAAAA-GAGTGGACAGAAAAGCTTTTCCTATGATACTAAAGCATCAATGTAAT
1 TTTGATTCTATCAAAAACG-GTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCAT
* * * * * * * * *
1218522 TTATCCTAACAAAGGAAATCTGTTTTTGGTTCCCAATATTGAAAAAAATGGAGACAATTACAAGA
65 GTGTCCTAATAAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGA
* * * * *
1218587 ATCGATGCTTATCATATTT-AGGGTATAAACTTTGATTTTAAGGAAAATAGGGCAAATAACAGAT
130 ATCGATGCTTGTCTTATTTAAGGG-ATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
* * *
1218651 TTCTATGCAAAAAAAAATCATCAATATCACTTATCCTAAGGAGAAGAATGTGTTTATAGTGCCTA
194 TTCTATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTATAGTGCCTA
* * * * *
1218716 ATCACAAAATGAGTGAAGATCATTAGTAGAATCTATGTTTATCTCATTTAAGGCATGAACTTAGA
259 ATCACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAACTTAGA
* ** * *
1218781 CTTTACAAATATTTTTGGGAAAAATGCCTTTCTTACGAAACCAAAGCAACAATATCATGTATCCT
324 CTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCT
* * *
1218846 AATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTTTTCATG
389 AATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATG
*
1218911 TTTGTCTTATTTAATAGACAAAC
454 TTTGTCTTATTTAAGAGACAAAC
* * * * * *
1218934 TTTGACTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCCTCTAACACCAAAGCATCAATGTCGTG
1 TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATG
* * * ** * * * *
1218999 TATCTTAATGAAGGGAATGTGTTTTTCATTTCCAATATTGAAAAGAATGGAGACTGTTATGAGAA
66 TGTCCTAATAAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAA
* * * *
1219064 TCGATGCTTGTCTTATTTAAGGGATGAACTTTTATTTTATGAAAAATAGAGCAAAGAAAAGATTT
131 TCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT
* * * * **
1219129 CCATGGAAAAGAAAATCATCATTATCATTTATCCGAATGAGAAGAATGTGTGGATAGTGCCTAAT
196 CTATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTATAGTGCCTAAT
* * * * *
1219194 CACAAAATGAGTGAAGATCATTAGTAGAATCTATGTTTGTCTAATTTGAGGCATGAACTTAGACA
261 CACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAACTTAGACT
* * * ** * ** * *
1219259 TTACAAAAATTGGTTGGAAAAATGGCTTCCAAGCGTAACTTAAGCATTAATATGATGTATCCTAA
326 TTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAA
* * * * **
1219324 TTAGAAGACTATATTTATGGTCCCTAATCCTGAAAAGAATGGAGATTAGTATGAGTATTCACATT
391 TGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTT
* * *
1219389 TGTCTTATTGAAAAGAGAAAC
456 TGTCTTATTTAAGAGACAAAC
* * **
1219410 TTTGATTCTATCAAAAACGGTGGAAAGAAAAGATTTTCTTGCGACACCAAAGCATCAATGTCACA
1 TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATG
* * * ** *** * *
1219475 TATCCCAATGAAA-GGAATGTGTTTTTTGTTCCCAATCTCAAAAAGAATGGAGACTGCCACAACA
66 TGTCCTAAT-AAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGA
* * *
1219539 ATCAATGCTTGTCTTATTTAAGTGATGAACTTTGATTTTAAGGAAAATAGGGAAAAGAAAAGATT
130 ATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
* * *
1219604 T-TCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAAT-TGTTTATAATCCCT
195 TCT-ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAG-AATGTGTTTATAGTGCCT
* * * * * * * *
1219667 AGTCACAAAATGAGTGAAGATCATTAGTAAAATCCATGTTTGCCTCATTTGAGGCACGAGCTTAA
258 AATCACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAACTTAG
** * * ** ** *
1219732 ACTTTACAAAAATTCATTGGAAAAATGGCTTTCAAGCTTAACCAAAGCATCAATATCATGTATCT
323 ACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCC
* * * *
1219797 TAGTGCGAAGACTATGTTTATAGTGCCTAAT-C-------------------T-TGACTATTCAT
388 TAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCAT
* * *
1219841 TTTTATCTTTTTTAAGAGACAAAC
453 GTTTGTCTTATTTAAGAGACAAAC
* * * * *
1219865 TTTGAATCTATCAAAAACGGTGGAAAGAAACGCTCTTT-TTGCGACACTAAAGCATCAATGTCAC
1 TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCT-TTTCTTGTGACACCAAAGCATCAATGTCAT
* * * * * *
1219929 GTTTCCGAATGAAAGGG-ATGTGTTTTTGGTTCCCGATCTTGAAAAAAATGGGGACTATTATGAG
65 GTGTCCTAAT-AAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAG
* * * * *
1219993 AATCGTTGCTTGTCTTATTTGAGGGATGAACTTTGATTTGAAGGAAAATAACGTC-AAGAAAAGA
129 AATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT-AGGGCAAAGAAAAGA
* * * *
1220057 TTTCCATGCAAAAGAAAAACATCAATATCATTTATCTTAATGAGGAA-AATGTGTTTATAGTACC
193 TTTCTATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA-GAAGAATGTGTTTATAGTGCC
* * * * *
1220121 TAATCACAAAATGAATGAACATCATCACTACAATCTATGTTTGTCTCATTTAAGGCACGAACTAA
257 TAATCACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAACTTA
* * * * * * *
1220186 GACTTTATAAAAGTTGG-GAGGAAAAAAGCCTTTCTTGCAAAACCGAAGCATTAAATGTCATGTA
322 GACTTTACAAAAATTGGTG-GGAAAAATGCCTTTCTTGCGAAACCAAAGCA-TCAATATCATGTA
* * * * * * *
1220250 TCCTAATGAGAGGACTACGTTTATAGTGCCTAATCCTGAAAAGAATGGGGACTAGCATGACTACT
385 TCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATT
* *
1220315 CATTTTTGTCTTATTTAAGAGAAAAAC
450 CATGTTTGTCTTATTTAAGAGACAAAC
*
1220342 TTTGATT-TATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATG
1 TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATG
* * * *
1220406 TATCCTAATTAAGAGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAA
66 TGTCCTAATAAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAA
* * *
1220471 TCGATGCTTCTCTTATTTAAGGGATTAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTT
131 TCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT
* *
1220536 -TCATGCAAAAGAAAATCATCAATATCATTTATCCTAACGAGAAGAATGTGTTTATAGTGCCTTA
196 CT-ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTATAGTGCCTAA
* ** **
1220600 TCAGAAAATGAATGAAGATCATTACTAGAATCTACATTTGTCTCATTTGAGGCATAAACTTAGAC
260 TCACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAACTTAGAC
* * * * *
1220665 TTTTCAAAAATTGGTGGGGAAAATGCCTTTCTTGCGATACCAAAACATCAATATCGTGTATCCTA
325 TTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTA
* * *
1220730 ATGAGAAGACTTTGTTTATGGTGCCTAA-CCTTAAAAAGAATGGGGATTAGTATGAGTATTTATG
390 ATGAGAAGACTATGTTTATGGTGCCTAATCC-TGAAAAGAATGGGGATTAGTATGAGTATTCATG
* * * *
1220794 TTTGTCTTATTGAAGAGATATAT
454 TTTGTCTTATTTAAGAGACAAAC
* * * * * *
1220817 TTTAATTCTATCAAAAA-TGTGAAAATAAAAGCTTTTCATGTGACACCAAAGCATCACTGTCATG
1 TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATG
* * * *
1220881 TGTCCTAATGAAGGGAATGTG-TTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGATA
66 TGTCCTAATAAAGGGAATGTGTTTTTGG-TTCCCAATCTTGAAAAGAATGGAGACTATTACGAGA
* * * * *
1220945 ATCGATTG-TAGTCTTCTTTAATGGATGAACTTTGATTTTATA-GAAAATACGACAAAGAAAAGA
130 ATCGA-TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AGGAAAATAGGGCAAAGAAAAGA
* * * * *
1221008 -TTCTCATGCAAATGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT-TTTTTGTAGCGCC
193 TTTCT-ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTATAGTGCC
* * * *
1221071 TAATCAGAAAATGAATGAAGATCATTACTAGAATCAATGTTTGTCTCATTTAAGGTACGAACTTA
257 TAATCACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAACTTA
* * **
1221136 GACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGATACCAAAGCATCAATATTGTGTATC
322 GACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATC
* ** * *
1221201 CTAATGAGAAGACTATGTTTATGGGGCCTCCTCGTGAAAAGAATGGAGATTAGTATGAGTATTCA
387 CTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCA
* * *
1221266 CGTTTGTCTTATTCACGAGACAAAC
452 TGTTTGTCTTATTTAAGAGACAAAC
* *
1221291 TTTGATTCTA-CAAAAAACGGTTGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAT
1 TTTGATTCTATC-AAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCAT
* * * ** *
1221355 GTATCCTAATAAAGGGAATGTGTTTTTCGTTCCCAATATTGAAAAGAATGGAGACCGTTGCGAGA
65 GTGTCCTAATAAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGA
** * * * * *
1221420 ATTAAAGCTTGTCTTATTTAAGGGATGGATTTTGATTTCAAGGAAAATAGGGCAAAGCAAAGATT
130 ATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
* * * * * * *
1221485 TCCATGCAAAAGAAAATCATCAACA-CTGTTTATCCTAATAAGCAGAATGTCTTTATAGTGCCTT
195 TCTATGCAAAAGAAAATCATCAATATC-ATTTATCCTAATGAGAAGAATGTGTTTATAGTGCCTA
* ** * *
1221549 ATCAGAAAATGAAAAAAGGTCATTACTAGAAT-TCATGTTTGTCTCATTTGAGGCACAAACTTAG
259 ATCACAAAATGAATGAAGATCATTACTAGAATCT-ATGTTTGTCTCATTTGAGGCACGAACTTAG
* ** * *
1221613 ACTTTACAAAAATTGGTGAGAAAAAAACCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCC
323 ACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCC
* * * *
1221678 TAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAGGGATGGGGATTAGTATTAGTATTCAT
388 TAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCAT
* *
1221743 GTTTGTCTTATTGAAGAGACAAAT
453 GTTTGTCTTATTTAAGAGACAAAC
* * * *
1221767 TTTAAGTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTAACACGAAAGCATCAATGTCATG
1 TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATG
* * * * * * * *
1221832 TGTCCTAATAAAGGGGATGTGTTTTAGCTTCCTATTCTTGAAACA-AATGGAGACTGTTACCAAA
66 TGTCCTAATAAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAA-AGAATGGAGACTATTACGAGA
* * *
1221896 ATCGATGCTTGTCATATTT-AGGGTATGAACTTTGATTTCATGGAAAATAGGGCAAAGAAAAGAT
130 ATCGATGCTTGTCTTATTTAAGGG-ATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
* * * *
1221960 TTCCACGC---AGAACAATCATCTATATCCTTTATCCTAATGAAGAA-AATGTGTTTATAGTGCC
194 TTCTATGCAAAAGAA-AATCATCAATATCATTTATCCTAATG-AGAAGAATGTGTTTATAGTGCC
* * * * * *
1222021 TAATCACAAAATGAATAAAGATCATTACTAGAATCCATATTTGACTCATTTGAGGCATGAACATA
257 TAATCACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAACTTA
* * * * * *
1222086 GACTTTATAATAATTAGTGGGAAAAATGCCTTTCTTGTGAAACCAAAACATTAATATCATGTATC
322 GACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATC
* * * * * * * *
1222151 ATAATGA-AATGATTATGTTTATGCTGCCTAATTCTTAGAAGAATAGAGA-TAGTATGAGTATTC
387 CTAATGAGAA-GACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTC
*
1222214 ATGTTTGTCTTATTTAAGAGACATAC
451 ATGTTTGTCTTATTTAAGAGACAAAC
* *
1222240 TTTGATTCTATCAAAAACGGTGG-ACGAAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCTT
1 TTTGATTCTATCAAAAACGGTGGAAAG-AAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCAT
* * * *
1222304 ATGTCCTAATGAAGGGAATGTG-TTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTACTATGA-
65 GTGTCCTAATAAAGGGAATGTGTTTTTGG-TTCCCAATCTTGAAAAGAATGGAGACTATTACGAG
* * * *
1222367 AGATCGATGCTTCTCATATTTATA-GTATGAACTTTGATTTTAAGGAAAATAAGGCAAAGACAAA
129 A-ATCGATGCTTGTCTTATTTA-AGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGA-AAA
*
1222431 -ATTT-TCATGCAAAA-AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
191 GATTTCT-ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTATAGTG
* * * * *
1222493 CCTAATCACAAAATGAATGAAGGTCATTACTAGAATCCGA-GTTTGACTTATTTGAGGCACAAAC
255 CCTAATCACAAAATGAATGAAGATCATTACTAGAAT-CTATGTTTGTCTCATTTGAGGCACGAAC
* * * * * * *
1222557 TTAGACTTTATAAAAATTGGTCGGAAAAATGCCTTTCTTGCAAAACCAAGGCGTTAATATCGTGT
319 TTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCATGT
* * * *
1222622 ATTCTACTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATAACTAT
384 ATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTAT
* * *
1222687 TCATATTTGTCTTATTGAAGAGACAAAT
449 TCATGTTTGTCTTATTTAAGAGACAAAC
* * **
1222715 TTTAATTCTATCAAAAAC-GTGGAAA-AAAAGGCTTTTCTTATGACACCAAAGCATCGCTGTCAT
1 TTTGATTCTATCAAAAACGGTGGAAAGAAAA-GCTTTTCTTGTGACACCAAAGCATCAATGTCAT
* *
1222778 GTGTCCTAATGAAGGGAATGTG-TTTTGGCTT-CCAATCTTGAAAAGAATGGAGACTATTACGAT
65 GTGTCCTAATAAAGGGAATGTGTTTTTGG-TTCCCAATCTTGAAAAGAATGGAGACTATTACGAG
* * *
1222841 AATCGATGCTAGTCTTATTTAAGGGATGAACTTTGATTTTATA-GAAAATACGGCAAAGAAAATA
129 AATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AGGAAAATAGGGCAAAGAAAAGA
* * * * *
1222905 TTTCCATGCAAAATAAAATCGTCAATATCATTTATCCTAATGAGGAGAATTTGTTTATAGTGCCT
193 TTTCTATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTATAGTGCCT
* * * *
1222970 AATAAGAAAATGAATTAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAG
258 AATCACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAACTTAG
* * * * * * *
1223035 ACTTTTCAAAAATTGGTCGAAAAAAAGCCTTTCTTGTGATACCAAAGCATCAATATCGTGTATCC
323 ACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCC
* * * * * *
1223100 TGATGAGAAAACTATGTTTAT-GTGGCCCACTCCTAAAAAGAATGGAGATTAGTATGAGTATTCA
388 TAATGAGAAGACTATGTTTATGGT-GCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCA
* * *
1223164 CGTTTGTCTT-TTTCAGGAGATAAAC
452 TGTTTGTCTTATTT-AAGAGACAAAC
* * * * **** *
1223189 TTTGATTCTATAAAAAATGGTTGAAAGAAAAGCTTTTCTTGCGACATTGGAGCATCAACGTCATG
1 TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATG
* * *
1223254 TATCCTAATAAAGGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGA-TAGTTATGAGA
66 TGTCCTAATAAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTA-TTACGAGA
** * * * * * *
1223318 ATTAAGGCTTGTCTTTTTTAAGGGATGGATTTTGATTTCAAGGAAAATAGGGCAAAGCAAAGATT
130 ATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
* * * * * * *
1223383 TCCATGCAAAAGAAAATCATCAACA-CTGTTTATCCTAATGAGCAGAATGTGTTTATAATACCTT
195 TCTATGCAAAAGAAAATCATCAATATC-ATTTATCCTAATGAGAAGAATGTGTTTATAGTGCCTA
* * * * * * *
1223447 ATCCCAAAATGAAAGAAGGTCTTTACTGGAAT-TCATGTTTGTCTCATTTGAGGAACAAACTTAG
259 ATCACAAAATGAATGAAGATCATTACTAGAATCT-ATGTTTGTCTCATTTGAGGCACGAACTTAG
* * * * *
1223511 ACTTTACAAAAATTGGTGAGAAAAAAGCC--T-TT-CAAAACCAAAACATCAATATCGTGTATCC
323 ACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCC
* * *
1223572 TATTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAGGAATGGGGATTAGTATGACTATTCAT
388 TAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCAT
* * *
1223637 GTGTGTCTTATTGAAGAGACAAAT
453 GTTTGTCTTATTTAAGAGACAAAC
* * * *
1223661 TTTAAGTT-TATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTAACGCGAAAGCATCAATGTCAT
1 TTTGA-TTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCAT
* * * * * * *
1223725 GTGTCCTAATAAAGGGGATGTGTTTTAGCTTCCCATTCCTGAAACA-AATGGAGACTGTTATGAG
65 GTGTCCTAATAAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAA-AGAATGGAGACTATTACGAG
* * * * *
1223789 AATCGATGCTTGCCATATTT-AGGGTATAAACTTTGATTTCATGGAAAATAGGGCAAAGAAAAGA
129 AATCGATGCTTGTCTTATTTAAGGG-ATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG-
** * * * * *
1223853 ATTTC-ACACAAAA-AAGATCATCTATATCCTTTATCCTAATGA-AGAGAATGTGTTCATAGTGT
192 ATTTCTATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGA-AGAATGTGTTTATAGTGC
* * * * * *
1223915 CTAATCACAAAATGAATAAAGATCATTACTAGAATCCATATTTGTCTCATTTAAGGCACTAACAT
256 CTAATCACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAACTT
* * * * * *
1223980 AAACTTTACAAAAATTAGCGGGAAAAATACCTTTCTTGTGAAACCAAAACATCAATATCATGTAT
321 AGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTAT
* * ** * * * * * *
1224045 CATAATGA-AATGATTATGTTTATACTGGCTAATTCTTAGAAGAATAGAGA-TAGTATGAGTATT
386 CCTAATGAGAA-GACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATT
*
1224108 CATGTTTGTCTTATTTAAGAGACATAC
450 CATGTTTGTCTTATTTAAGAGACAAAC
* * * *
1224135 TTTGATTCTATCAAAAACGTTGGACAGAAAAGCTTTTCTTGTGACACGAAAACATCAATGTCATG
1 TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATG
* * * * *
1224200 TGTCCTAATGAAGGGAATGTGTTTTAGCTTCCCAATCTTGAAAAGAATGGAGACTACTATGAGAA
66 TGTCCTAATAAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAA
* * * * * *
1224265 TCGATGCTTCTCATATTTATGGTATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAAATTT
131 TCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT
* * *
1224330 -TCATGGAAAA-AAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
196 CT-ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTATAGTGCCTAA
* * * * *
1224393 TCACAAAATGAATGAAGGTTATTACTAGAATCCGA-GTTTGTCTTATTTGAGGCACAAACTTAGA
260 TCACAAAATGAATGAAGATCATTACTAGAAT-CTATGTTTGTCTCATTTGAGGCACGAACTTAGA
* * * * * *
1224457 CTTTACAAAAATTGGTCGAAAAAATCCCTTTCTTTCGAAACCAAGGCATCAATATCGTGTATCCT
324 CTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCT
*
1224522 ACA-GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCAT
389 A-ATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCAT
* *
1224586 GTTTGTCTTATTGAAGACG-CAAAT
453 GTTTGTCTTATTTAAGA-GACAAAC
* * * *
1224610 TTTGATTCTATAAAAAAC-GTGGAAAAAAAAGCTTTTCTTGTGACACCAAAGCATCACTATCATG
1 TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATG
* * * *
1224674 TGTCTTAATAAAGGGAATGTG-TTCTGGCTTCCTAATCTTGAAAAGAATGGAGACTATTACGATA
66 TGTCCTAATAAAGGGAATGTGTTTTTGG-TTCCCAATCTTGAAAAGAATGGAGACTATTACGAGA
*
1224738 ATCGATGCTAGTCTT-TTTAAGGGATGAACTTTGA---TAA-GAAAATAGGGCAAAGAAAAGATT
130 ATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
* * * * *
1224798 T-TCACGCAAAAGAATATCATCTATATCCTTTATCCTAATGAAGAA-AATGTGTTTATAGTACCT
195 TCT-ATGCAAAAGAAAATCATCAATATCATTTATCCTAATG-AGAAGAATGTGTTTATAGTGCCT
* * * * * * * *
1224861 TATCACAATATGAATAAAGATCATTACTAGGATCCATATTTGACTCA-TT-A--C-CGAACATAG
258 AATCACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAACTTAG
* * * *
1224921 ACTTTACAAAAATTGGTGAGAAAAATGCCTTTCTTGTGAAACCAAAACATCAATATCATGTATCA
323 ACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCC
* * * * * * * * *
1224986 TAACGAGATGATTATGTTTATGCTACCTAATTCT-TAGA-AATGGAGATTAGTATGAGTATTCAT
388 TAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCAT
*
1225049 GTTTGTCTTATTTAAGAGACATAC
453 GTTTGTCTTATTTAAGAGACAAAC
* * * *
1225073 TTTGATTCTATCAAAAACGATGGACAGAAAAGCTTTTCTGGTGACACGAAAGCATCAATGTCATG
1 TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATG
* * * * *
1225138 TGTCCTAATGAAGGGAATGTG-TTTCGACTTCCCAATCTTGAAAAGAATGGAGACTACTACAAGA
66 TGTCCTAATAAAGGGAATGTGTTTTTG-GTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGA
* * *
1225202 ATCGATGCTTGTCATATTT-AGGGTATAAACTTTGATTTTAAGGAAAATAAGGCAAAGGAAAA-A
130 ATCGATGCTTGTCTTATTTAAGGG-ATGAACTTTGATTTTAAGGAAAATAGGGCAAA-GAAAAGA
* * * * *
1225265 TTT-TCATGCAAAAAAAAAGCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCG
193 TTTCT-ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTATAGTGCC
* * *
1225329 TAATCACAAAATGAATGAAGGTCATTACTAGAATCTGA-GTTTGTCTTATTTGAGGCACAAACTT
257 TAATCACAAAATGAATGAAGATCATTACTAGAATCT-ATGTTTGTCTCATTTGAGGCACGAACTT
* * ** * **
1225393 AGACTTTACAAAAATTGGTCGAAAAAATGCCTTTCTTATGAAACCAAAGCGTCAATATTGTGTAT
321 AGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTAT
*
1225458 CCTACA-GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATT
386 CCTA-ATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATT
* *
1225522 CGTGTTTGTCTTATTTAAGAGATAAAC
450 CATGTTTGTCTTATTTAAGAGACAAAC
*
1225549 TTTGACTCTATC
1 TTTGATTCTATC
1225561 TGATGAAAAC
Statistics
Matches: 5966, Mismatches: 986, Indels: 302
0.82 0.14 0.04
Matches are distributed among these distances:
454 3 0.00
455 322 0.05
456 50 0.01
457 1 0.00
462 1 0.00
463 59 0.01
464 113 0.02
465 102 0.02
466 1 0.00
468 7 0.00
469 135 0.02
470 86 0.01
471 121 0.02
472 260 0.04
473 346 0.06
474 1487 0.25
475 715 0.12
476 2107 0.35
477 50 0.01
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (476 bp):
TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATG
TGTCCTAATAAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAA
TCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT
CTATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTATAGTGCCTAAT
CACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAACTTAGACT
TTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAA
TGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTT
TGTCTTATTTAAGAGACAAAC
Found at i:1220455 original size:158 final size:157
Alignment explanation
Indices: 1219846--1225553 Score: 1062
Period size: 158 Copynumber: 36.1 Consensus size: 157
1219836 TTCATTTTTA
* * * * *
1219846 TCTTTTTTAAGAGACAAACTTTGAATCTATCAAAAACGGTGGAAAGAAACGCTCTTT-TTGCGAC
1 TCTTATTTAAG-GATAAACTTTG-ATTTATCAAAAACGGTGGAAAGAAAAGCT-TTTCTTGCGAA
* * * * * * * * *
1219910 ACTAAAGCATCAATGTCACGTTTCCGAATGAA-AGGGATGTGTTTTTGGTTCCCGATCTTGAAAA
63 ACCAAAGCATCAATATCATGTATCCTAAT-AAGA-GAATGTGTTTATGGTGCCCAATCTTGAAAA
* * * * * *
1219974 AAATGGGGACTATTATGA-GAATCGTTGCTTG
126 GAATGGAGACTAGTATGACTAATCGATGTTTG
* * ** * * * * *
1220005 TCTTATTTGAGGGATGAACTTTGATTTGAAGGAAAATAAC-GT--CAAGAAAAGATTTCCATGCA
1 TCTTATTT-AAGGATAAACTTTGATTT--A-TCAAA-AACGGTGGAAAGAAAAGCTTTTCTTGCG
** * * * * * * * * **
1220067 AAAGAAAAACATCAATATCATTTATCTTAATGAGGAAAATGTGTTTATAGTACCTAATC-ACAAA
61 AAACCAAAGCATCAATATCATGTATCCTAAT-AAGAGAATGTGTTTATGGTGCCCAATCTTGAAA
* *
1220131 ATGAAT-GA-AC-A-TCATCACTACAATCTATGTTTG
125 A-GAATGGAGACTAGT-ATGACT--AATCGATGTTTG
* ** ** * * *
1220164 TCTCATTTAAGGCACGAACTAAGACTTTAT--AAAA-GTTGGGAGGAA-AAAAGCCTTTCTTGCA
1 TCTTATTTAAGG-ATAAACTTTGA-TTTATCAAAAACGGT-GGA--AAGAAAAGCTTTTCTTGCG
* * * * * ** * * *
1220225 AAACCGAAGCATTAAATGTCATGTATCCTAATGAGAGGACTACGTTTATAGTGCCTAATCCTGAA
61 AAACCAAAGCA-TCAATATCATGTATCCTAATAAGA-GAATGTGTTTATGGTGCCCAATCTTGAA
* * * *
1220290 AAGAATGGGGACTAGCATGACTACTC-ATTTTTG
124 AAGAATGGAGACTAGTATGACTAATCGATGTTTG
* *
1220323 TCTTATTTAAGAGAAAAACTTTGATTTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACAC
1 TCTTATTTAAG-GATAAACTTTGATTTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGAAAC
* * *
1220388 CAAAGCATCAATGTCATGTATCCTAATTAAGAGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAA
65 CAAAGCATCAATATCATGTATCCTAA-TAAGAGAATGTGTTTATGGTGCCCAATCTTGAAAAGAA
* * * *
1220453 TGGAGACTATTATGA-GAATCGATGCTTC
129 TGGAGACTAGTATGACTAATCGATGTTTG
* * * * * * *
1220481 TCTTATTTAAGGGATTAACTTTGATTTA-AAGGAAAATAGG-GCAAAGAAAAGATTTTCATGCAA
1 TCTTATTTAA-GGATAAACTTTGATTTATCA--AAAA-CGGTGGAAAGAAAAGCTTTTCTTGCGA
** * * ** * ** *
1220544 AAGAAAATCATCAATATCATTTATCCTAACGAGAAGAATGTGTTTATAGTGCCTTATC-AGAAAA
62 AACCAAAGCATCAATATCATGTATCCTAATAAG-AGAATGTGTTTATGGTGCCCAATCTTGAAAA
* * **
1220608 TGAATGAAGA-TCA-T-T-ACTAGAATCTACATTTG
126 -GAATGGAGACT-AGTATGACT--AATCGATGTTTG
* * * * * *
1220640 TCTCATTTGAGGCATAAACTTAGACTTT-TCAAAAATTGGTGG--GGAAAATGCCTTTCTTGCGA
1 TCTTATTTAAGG-ATAAACTTTGA-TTTATCAAAAA-CGGTGGAAAGAAAA-GCTTTTCTTGCGA
* * * * * * * * *
1220702 TACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTTTGTTTATGGTGCCTAACCTTAAAAA
62 AACCAAAGCATCAATATCATGTATCCTAATAAG-AGAATGTGTTTATGGTGCCCAATCTTGAAAA
* * * **
1220767 GAATGGGGATTAGTATGAGT-ATTTATGTTTG
126 GAATGGAGACTAGTATGACTAATCGATGTTTG
* * * * * * * * * *
1220798 TCTTATTGAAGAGATATATTTTAATTCTATCAAAAA-TGTGAAAATAAAAGCTTTTCATGTGACA
1 TCTTATTTAAG-GATAAACTTTGATT-TATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGAAA
* * * * *
1220862 CCAAAGCATCACTGTCATGTGTCCTAATGAAGGGAATGTGTTT-TGGCTTCCCAATCTTGAAAAG
64 CCAAAGCATCAATATCATGTATCCTAAT-AAGAGAATGTGTTTATGG-TGCCCAATCTTGAAAAG
*
1220926 AATGGAGACT-GTTATGA-TAATCGAT-TGTAG
127 AATGGAGACTAG-TATGACTAATCGATGT-TTG
* * * ** * * *
1220956 TCTTCTTTAATGGATGAACTTTGATTTTATAGAAAATAC-G-ACAAAGAAAAGATTCTCATGC-A
1 TCTTATTTAA-GGATAAACTTTGA-TTTAT-CAAAA-ACGGTGGAAAGAAAAGCTTTTCTTGCGA
** * * * * * * * * *
1221018 AATGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT-TTTTTGTAGCGCCTAATC-AGAAA
62 AA-CCAAAGCATCAATATCATGTATCCTAAT-AAGAGAATGTGTTTATGGTGCCCAATCTTGAAA
* *
1221081 ATGAATGAAGA-TCA-T-T-ACTAGAATCAATGTTTG
125 A-GAATGGAGACT-AGTATGACT--AATCGATGTTTG
* * * * *
1221114 TCTCATTTAAGG-TACGAACTTAGACTTTA-CAAAAATTGGTGGGAA-AAAAGCCTTTCTTGCGA
1 TCTTATTTAAGGATA--AACTTTGA-TTTATCAAAAA-CGGTGGAAAGAAAAGCTTTTCTTGCGA
* ** * * * * * *
1221176 TACCAAAGCATCAATATTGTGTATCCTAATGAGAAGACTATGTTTATGGGGCCTC-CTCGTGAAA
62 AACCAAAGCATCAATATCATGTATCCTAATAAG-AGAATGTGTTTATGGTGCC-CAATCTTGAAA
* * * *
1221240 AGAATGGAGATTAGTATGAGTATTC-ACGTTTG
125 AGAATGGAGACTAGTATGACTAATCGATGTTTG
* * * * *
1221272 TCTTATTCACGAGACAAACTTTGATTCTA-CAAAAAACGGTTGAAAGAAAAGCTTTTCTTGCGAC
1 TCTTATTTAAG-GATAAACTTTGATT-TATC-AAAAACGGTGGAAAGAAAAGCTTTTCTTGCGAA
* * * * * *
1221336 ACCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTTTTCGTTCCCAATATTGAAAAG
63 ACCAAAGCATCAATATCATGTATCCTAAT-AAGAGAATGTGTTTATGGTGCCCAATCTTGAAAAG
* * ** * *
1221401 AATGGAGAC-CGT-TG-CGAGAATTAAAGCTTG
127 AATGGAGACTAGTATGAC--TAATCGATGTTTG
** * ** * * * * * *
1221431 TCTTATTTAAGGGATGGATTTTGATTTCAAGGAAAATA-GG-GCAAAGCAAAGATTTCCATGCAA
1 TCTTATTTAA-GGATAAACTTTGATTT--ATCAAAA-ACGGTGGAAAGAAAAGCTTTTCTTGCGA
** * * * * ** *
1221494 AAGAAAATCATCAACA-C-TGTTTATCCTAATAAGCAGAATGTCTTTATAGTGCCTTATC-AGAA
62 AACCAAAGCATCAATATCATG--TATCCTAATAAG-AGAATGTGTTTATGGTGCCCAATCTTGAA
* *
1221556 AATGAA---A-A-AAGGTCATTACTAGAATTC-ATGTTTG
124 AA-GAATGGAGACTA-GT-ATGACT--AA-TCGATGTTTG
* * * * * *
1221590 TCTCATTTGAGGCACAAACTTAGACTTTA-CAAAAATTGGTGAGAAA-AAAA-CCTTTCTTGCGA
1 TCTTATTTAAGG-ATAAACTTTGA-TTTATCAAAAA-CGGTG-GAAAGAAAAGCTTTTCTTGCGA
* * * * * * * *
1221652 AACCAAAACATCAATATCGTGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAG
62 AACCAAAGCATCAATATCATGTATCCTAATAAGAGAA-TGTGTTTATGGTGCCCAATCTTGAAAA
* * * * * *
1221717 GGATGGGGATTAGTATTAGTATTC-ATGTTTG
126 GAATGGAGACTAGTATGACTAATCGATGTTTG
* * * * * *
1221748 TCTTATTGAAGAGACAAATTTTAAGTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTG-TAAC
1 TCTTATTTAAG-GATAAACTTTGA-TTTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGAA-
* * * * * * * * *
1221812 ACGAAAGCATCAATGTCATGTGTCCTAATAAAGGGGATGTGTTT-TAGCTTCCTATTCTTGAAAC
63 ACCAAAGCATCAATATCATGTATCCTAAT-AAGAGAATGTGTTTAT-GGTGCCCAATCTTGAAA-
* *
1221876 A-AATGGAGACT-GT-T-ACCAAAATCGATGCTTG
125 AGAATGGAGACTAGTATGA-C-TAATCGATGTTTG
* * * * * * * **
1221907 TCATATTTAGGGTATGAACTTTGATTTCATGGAAAATA-GG-GCAAAGAAAAGATTTCCACGC-A
1 TCTTATTTAAGG-ATAAACTTTGATTT-AT-CAAAA-ACGGTGGAAAGAAAAGCTTTTCTTGCGA
* * * * * * * **
1221969 GAA-C-AATCATCTATATCCTTTATCCTAATGAAGAAAATGTGTTTATAGTGCCTAATC-ACAAA
62 -AACCAAAGCATCAATATCATGTATCCTAAT-AAGAGAATGTGTTTATGGTGCCCAATCTTGAAA
** * *
1222031 ATGAATAAAGA-TCA-T-T-ACTAGAATCCATATTTG
125 A-GAATGGAGACT-AGTATGACT--AATCGATGTTTG
* * * * * * *** * * * *
1222064 ACTCATTTGAGGCATGAACATAGACTTTAT-AATAATTAGTGGGAA-AAATGCCTTTCTTGTGAA
1 TCTTATTTAAGG-ATAAACTTTGA-TTTATCAA-AAACGGTGGAAAGAAAAGCTTTTCTTGCGAA
* * * * * * * *
1222127 ACCAAAACATTAATATCATGTATCATAATGAA-ATGATTATGTTTATGCTGCCTAATTCTT-AGA
63 ACCAAAGCATCAATATCATGTATCCTAAT-AAGA-GAATGTGTTTATGGTGCCCAA-TCTTGAAA
* * *
1222190 AGAATAGAGA-TAGTATGAGTATTC-ATGTTTG
125 AGAATGGAGACTAGTATGACTAATCGATGTTTG
* * * * *
1222221 TCTTATTTAAGAGACATACTTTGATTCTATCAAAAACGGTGG-ACGAAAAAGCTTTTCTTGTGAC
1 TCTTATTTAAG-GATAAACTTTGATT-TATCAAAAACGGTGGAAAG-AAAAGCTTTTCTTGCGAA
* * * * * *
1222285 ACCAAAGCATCAATGTCTTATGTCCTAATGAAGGGAATGTGTTT-TGGCTTCCCAATCTTGAAAA
63 ACCAAAGCATCAATATCATGTATCCTAAT-AAGAGAATGTGTTTATGG-TGCCCAATCTTGAAAA
* * *
1222349 GAATGGAGACTACTATGA--AGATCGATGCTTC
126 GAATGGAGACTAGTATGACTA-ATCGATGTTTG
* * * * ** * * *
1222380 TCATATTTATAGTATGAACTTTGATTT-TAAGGAAAATAAG-GCAAAGACAAA-ATTTTCATGC-
1 TCTTATTTA-AGGATAAACTTTGATTTATCA--AAAA-CGGTGGAAAGA-AAAGCTTTTCTTGCG
** * * * * * **
1222441 AAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC-ACAAA
61 AAACCAAAGCATCAATATCATGTATCCTAAT-AAGAGAATGTGTTTATGGTGCCCAATCTTGAAA
* *
1222505 ATGAAT-GA-A--GGTCATTACTAGAATCCGA-GTTTG
125 A-GAATGGAGACTAGT-ATGACT--AAT-CGATGTTTG
* * * * * * * *
1222538 ACTTATTTGAGGCACAAACTTAGACTTTAT-AAAAATTGGTCGG-AA-AAATGCCTTTCTTGCAA
1 TCTTATTTAAGG-ATAAACTTTGA-TTTATCAAAAA-CGGT-GGAAAGAAAAGCTTTTCTTGCGA
* * * * * * * * * * *
1222600 AACCAAGGCGTTAATATCGTGTATTCTACTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA
62 AACCAAAGCATCAATATCATGTATCCTAATAAG-AGAATGTGTTTATGGTGCCCAATCTTGAAAA
* * * * *
1222665 GAATGGGGATTAGTATAACTATTC-ATATTTG
126 GAATGGAGACTAGTATGACTAATCGATGTTTG
* * * * ** *
1222696 TCTTATTGAAGAGACAAATTTTAATTCTATCAAAAAC-GTGGAAA-AAAAGGCTTTTCTTATGAC
1 TCTTATTTAAG-GATAAACTTTGATT-TATCAAAAACGGTGGAAAGAAAA-GCTTTTCTTGCGAA
** * * * *
1222759 ACCAAAGCATCGCTGTCATGTGTCCTAATGAAGGGAATGTGTTT-TGGCT-TCCAATCTTGAAAA
63 ACCAAAGCATCAATATCATGTATCCTAAT-AAGAGAATGTGTTTATGG-TGCCCAATCTTGAAAA
* * * *
1222822 GAATGGAGACTATTACGA-TAATCGATGCTAG
126 GAATGGAGACTAGTATGACTAATCGATGTTTG
* * * ** * * *
1222853 TCTTATTTAAGGGATGAACTTTGATTTTATAGAAAATAC-G-GCAAAGAAAATATTTCCATGCAA
1 TCTTATTTAA-GGATAAACTTTGA-TTTAT-CAAAA-ACGGTGGAAAGAAAAGCTTTTCTTGCGA
** * * * * * * * **
1222916 AATAAAATCGTCAATATCATTTATCCTAATGAGGAGAATTTGTTTATAGTGCCTAAT-AAGAAAA
62 AACCAAAGCATCAATATCATGTATCCTAAT-AAGAGAATGTGTTTATGGTGCCCAATCTTGAAAA
** *
1222980 TGAATTAAGA-TCA-T-T-ACTAGAATCAATGTTTG
126 -GAATGGAGACT-AGTATGACT--AATCGATGTTTG
* * ** * * * * * *
1223012 TCTCATTTGAGGCACGAACTTAGACTTT-TCAAAAATTGGTCGAAA-AAAAGCCTTTCTTGTGAT
1 TCTTATTTAAGG-ATAAACTTTGA-TTTATCAAAAA-CGGTGGAAAGAAAAGCTTTTCTTGCGAA
* * * * * * * *
1223075 ACCAAAGCATCAATATCGTGTATCCTGATGAGAAAACTATGTTTAT-GTGGCCCACTCCTAAAAA
63 ACCAAAGCATCAATATCATGTATCCTAATAAGAGAA-TGTGTTTATGGT-GCCCAATCTTGAAAA
* * * *
1223139 GAATGGAGATTAGTATGAGTATTC-ACGTTTG
126 GAATGGAGACTAGTATGACTAATCGATGTTTG
* * * * *
1223170 TCTT-TTTCAGGAGATAAACTTTGATTCTATAAAAAATGGTTGAAAGAAAAGCTTTTCTTGCGAC
1 TCTTATTT-AAG-GATAAACTTTGATT-TATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGAA
**** ** * * * *
1223234 ATTGGAGCATCAACGTCATGTATCCTAATAAAGGGAATGTGTTTTTGGTTCCTAATCTTGAAAAG
63 ACCAAAGCATCAATATCATGTATCCTAAT-AAGAGAATGTGTTTATGGTGCCCAATCTTGAAAAG
* ** * *
1223299 AATGGAGA-TAGTTATGA-GAATTAAGGCTTG
127 AATGGAGACTAG-TATGACTAATCGATGTTTG
* ** * ** * * * * * *
1223329 TCTTTTTTAAGGGATGGATTTTGATTTCAAGGAAAATA-GG-GCAAAGCAAAGATTTCCATGCAA
1 TCTTATTTAA-GGATAAACTTTGATTT--ATCAAAA-ACGGTGGAAAGAAAAGCTTTTCTTGCGA
** * * * ** * ** **
1223392 AAGAAAATCATCAACA-C-TGTTTATCCTAATGAGCAGAATGTGTTTATAATACCTTATC-CCAA
62 AACCAAAGCATCAATATCATG--TATCCTAATAAG-AGAATGTGTTTATGGTGCCCAATCTTGAA
* * *
1223454 AATGAAAGAAGGTCT--T-T-ACTGGAATTC-ATGTTTG
124 AA-GAATGGA-GACTAGTATGACT--AA-TCGATGTTTG
* * * * * * *
1223488 TCTCATTTGAGGAACAAACTTAGACTTTA-CAAAAATTGGT-GAGAA-AAAAGC----CTTTCAA
1 TCTTATTTAAGG-ATAAACTTTGA-TTTATCAAAAA-CGGTGGA-AAGAAAAGCTTTTCTTGCGA
* * * * * * * * *
1223546 AACCAAAACATCAATATCGTGTATCCTATTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAG
62 AACCAAAGCATCAATATCATGTATCCTAATAAG-AGAATGTGTTTATGGTGCCCAATCTTGAAAA
* * * *
1223611 GAATGGGGATTAGTATGACTATTC-ATGTGTG
126 GAATGGAGACTAGTATGACTAATCGATGTTTG
* * * * *
1223642 TCTTATTGAAGAGACAAATTTTAAGTTTATCAAAAACGGTGGAAAGAAAAGCTTTTCTT--GTAA
1 TCTTATTTAAG-GATAAACTTTGA-TTTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGAAA
* * * * * * * *
1223705 CGCGAAAGCATCAATGTCATGTGTCCTAATAAAGGGGATGTGTTT-TAGCTTCCCATTCCTGAAA
64 C-C-AAAGCATCAATATCATGTATCCTAAT-AAGAGAATGTGTTTAT-GGTGCCCAATCTTGAAA
* *
1223769 CA-AATGGAGACT-GTTATGA-GAATCGATGCTTG
125 -AGAATGGAGACTAG-TATGACTAATCGATGTTTG
* * * * * ** ***
1223801 CCATATTTAGGGTATAAACTTTGATTTCATGGAAAATA-GG-GCAAAGAAAAGAATTTCACAC-A
1 TCTTATTTAAGG-ATAAACTTTGATTT-AT-CAAAA-ACGGTGGAAAGAAAAGCTTTTCTTGCGA
* * * * * * * **
1223863 AA--AAAGATCATCTATATCCTTTATCCTAATGAAGAGAATGTGTTCATAGTGTCTAATC-ACAA
62 AACCAAAG--CATCAATATCATGTATCCTAAT-AAGAGAATGTGTTTATGGTGCCCAATCTTGAA
** * *
1223925 AATGAATAAAGA-TCA-T-T-ACTAGAATCCATATTTG
124 AA-GAATGGAGACT-AGTATGACT--AATCGATGTTTG
* * ** * * * *
1223959 TCTCATTTAAGGCACT-AACATAAACTTTA-CAAAAATTAGCG-GGAAA-AATA-CCTTTCTTGT
1 TCTTATTTAAGG-A-TAAACTTTGA-TTTATCAAAAA--CG-GTGGAAAGAAAAGCTTTTCTTGC
* * * * ** * *
1224019 GAAACCAAAACATCAATATCATGTATCATAATGAA-ATGATTATGTTTATACTGGCTAATTCTT-
60 GAAACCAAAGCATCAATATCATGTATCCTAAT-AAGA-GAATGTGTTTATGGTGCCCAA-TCTTG
* * * *
1224082 AGAAGAATAGAGA-TAGTATGAGTATTC-ATGTTTG
122 AAAAGAATGGAGACTAGTATGACTAATCGATGTTTG
* * * * * *
1224116 TCTTATTTAAGAGACATACTTTGATTCTATCAAAAACGTTGGACAGAAAAGCTTTTCTTGTGACA
1 TCTTATTTAAG-GATAAACTTTGATT-TATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGAAA
* * * * * * *
1224181 CGAAAACATCAATGTCATGTGTCCTAATGAAGGGAATGTGTTT-TAGCTTCCCAATCTTGAAAAG
64 CCAAAGCATCAATATCATGTATCCTAAT-AAGAGAATGTGTTTAT-GGTGCCCAATCTTGAAAAG
* * * *
1224245 AATGGAGACTACTATGA-GAATCGATGCTTC
127 AATGGAGACTAGTATGACTAATCGATGTTTG
* * * * ** * ** *
1224275 TCATATTTATGGTATGAACTTTGATTT-TAAGGAAAATAAG-GCAAAGAAAAAATTTTCATG-GA
1 TCTTATTTAAGG-ATAAACTTTGATTTATCA--AAAA-CGGTGGAAAGAAAAGCTTTTCTTGCGA
** * * * * * * **
1224337 AAAAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC-ACAAAA
62 AACCAAAGCATCAATATCATGTATCCTAAT-AAGAGAATGTGTTTATGGTGCCCAATCTTGAAAA
* * *
1224401 TGAATGAAG-GT--TATTACTAGAATCCGA-GTTTG
126 -GAATGGAGACTAGTATGACT--AAT-CGATGTTTG
* * * * * ** * *
1224433 TCTTATTTGAGGCACAAACTTAGACTTTA-CAAAAATTGGTCGAAA-AAATCCCTTTCTTTCGAA
1 TCTTATTTAAGG-ATAAACTTTGA-TTTATCAAAAA-CGGTGGAAAGAAAAGCTTTTCTTGCGAA
* * * * * * *
1224496 ACCAAGGCATCAATATCGTGTATCCTACA-GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA
63 ACCAAAGCATCAATATCATGTATCCTA-ATAAG-AGAATGTGTTTATGGTGCCCAATCTTGAAAA
* * *
1224560 GAATGGGGATTAGTATGACTATTC-ATGTTTG
126 GAATGGAGACTAGTATGACTAATCGATGTTTG
* * * * * * *
1224591 TCTTATTGAA-GACGCAAATTTTGATTCTATAAAAAAC-GTGGAAAAAAAAGCTTTTCTTGTGAC
1 TCTTATTTAAGGA--TAAACTTTGATT-TATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGAA
* * * * * * *
1224654 ACCAAAGCATCACTATCATGTGTCTTAATAAAGGGAATGTG-TTCTGGCTTCCTAATCTTGAAAA
63 ACCAAAGCATCAATATCATGTATCCTAAT-AAGAGAATGTGTTTATGG-TGCCCAATCTTGAAAA
* * * *
1224718 GAATGGAGACTATTACGA-TAATCGATGCTAG
126 GAATGGAGACTAGTATGACTAATCGATGTTTG
* ** * * **
1224749 TCTT-TTTAAGGGATGAACTTTGA--TAAGAAAATA-GG-GCAAAGAAAAGATTTTCACGC-AAA
1 TCTTATTTAA-GGATAAACTTTGATTTATCAAAA-ACGGTGGAAAGAAAAGCTTTTCTTGCGAAA
** * * * * * * * ** ** *
1224808 AGAATATCATCTATATCCTTTATCCTAATGAAGAAAATGTGTTTATAGTACCTTATC-ACAATAT
64 CCAA-AGCATCAATATCATGTATCCTAAT-AAGAGAATGTGTTTATGGTGCCCAATCTTGAA-AA
** * *
1224872 GAATAAAGA-TCA-T-T-ACTAGGATCCATATTTG
126 GAATGGAGACT-AGTATGACTA--ATCGATGTTTG
* * ** * * * * * *
1224903 ACTCA-TTACCG---AACATAGACTTTA-CAAAAATTGGT-GAGAA-AAATGCCTTTCTTGTGAA
1 TCTTATTTAAGGATAAACTTTGA-TTTATCAAAAA-CGGTGGA-AAGAAAAGCTTTTCTTGCGAA
* * ** * * * * * *
1224961 ACCAAAACATCAATATCATGTATCATAACGAGATGATTATGTTTATGCTACCTAATTCTT--AGA
63 ACCAAAGCATCAATATCATGTATCCTAATAAGA-GAATGTGTTTATGGTGCCCAA-TCTTGAAAA
* * *
1225024 -AATGGAGATTAGTATGAGTATTC-ATGTTTG
126 GAATGGAGACTAGTATGACTAATCGATGTTTG
* * * * * * *
1225054 TCTTATTTAAGAGACATACTTTGATTCTATCAAAAACGATGGACAGAAAAGCTTTTCTGGTGACA
1 TCTTATTTAAG-GATAAACTTTGATT-TATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGAAA
* * * * * * *
1225119 CGAAAGCATCAATGTCATGTGTCCTAATGAAGGGAATGTGTTT-CGACTTCCCAATCTTGAAAAG
64 CCAAAGCATCAATATCATGTATCCTAAT-AAGAGAATGTGTTTATG-GTGCCCAATCTTGAAAAG
* * ** *
1225183 AATGGAGACTACTA-CAAGAATCGATGCTTG
127 AATGGAGACTAGTATGACTAATCGATGTTTG
* * * ** * * * *
1225213 TCATATTTAGGGTATAAACTTTGATTT-TAAGGAAAATAAG-GCAAAGGAAAA-ATTTTCATGCA
1 TCTTATTTAAGG-ATAAACTTTGATTTATCA--AAAA-CGGTGGAAA-GAAAAGCTTTTCTTGCG
** * * * * ** **
1225275 AAAAAAAAGCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCGTAATC-ACAAA
61 AAACCAAAGCATCAATATCATGTATCCTAAT-AAGAGAATGTGTTTATGGTGCCCAATCTTGAAA
* *
1225339 ATGAAT-GA-A--GGTCATTACTAGAATCTGA-GTTTG
125 A-GAATGGAGACTAGT-ATGACT--AATC-GATGTTTG
* * * * * * * **
1225372 TCTTATTTGAGGCACAAACTTAGACTTTA-CAAAAATTGGTCGAAA-AAATGCCTTTCTTATGAA
1 TCTTATTTAAGG-ATAAACTTTGA-TTTATCAAAAA-CGGTGGAAAGAAAAGCTTTTCTTGCGAA
* ** * * * * *
1225435 ACCAAAGCGTCAATATTGTGTATCCTACA-GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA
63 ACCAAAGCATCAATATCATGTATCCTA-ATAAG-AGAATGTGTTTATGGTGCCCAATCTTGAAAA
* * *
1225499 GAATGGGGATTAGTATGACTATTCG-TGTTTG
126 GAATGGAGACTAGTATGACTAATCGATGTTTG
1225530 TCTTATTTAAGAGATAAACTTTGA
1 TCTTATTTAAG-GATAAACTTTGA
1225554 CTCTATCTGA
Statistics
Matches: 3901, Mismatches: 1215, Indels: 867
0.65 0.20 0.14
Matches are distributed among these distances:
150 6 0.00
151 18 0.00
152 16 0.00
153 61 0.02
154 174 0.04
155 48 0.01
156 89 0.02
157 481 0.12
158 1537 0.39
159 1288 0.33
160 125 0.03
161 41 0.01
162 16 0.00
163 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (157 bp):
TCTTATTTAAGGATAAACTTTGATTTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGAAACC
AAAGCATCAATATCATGTATCCTAATAAGAGAATGTGTTTATGGTGCCCAATCTTGAAAAGAATG
GAGACTAGTATGACTAATCGATGTTTG
Found at i:1221274 original size:474 final size:474
Alignment explanation
Indices: 1219834--1225560 Score: 6584
Period size: 474 Copynumber: 12.1 Consensus size: 474
1219824 TAATCTTGAC
* * * * * *
1219834 TATTCATTTTTATCTTTTTTAAGAGACAAACTTTGAATCTATCAAAAACGGTGGAAAGAAACGCT
1 TATTCATGTTTGTCTTATTGAAGAGACAAACTTTGATTCTATCAAAAA-GGTGGAAAGAAAAGCT
* * * * *
1219899 CTTT-TTGCGACACTAAAGCATCAATGTCACGTTTCCGAATGAAAGGG-ATGTGTTTTTGG-TTC
65 -TTTCTTGTGACACCAAAGCATCAATGTCATGTGTCCTAATG-AAGGGAATGTG-TTTTGGCTTC
* * * * *
1219961 CCGATCTTGAAAAAAATGGGGACTATTATGAGAATCGTTGCTTGTCTTATTTGAGGGATGAACTT
127 CCAATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTT
* * * *
1220026 TGATTTGAAGGAAAATAACGTC-AAGAAAAGATTTCCATGCAAAAGAAAAACATCAATATCATTT
192 TGATTTTAAGGAAAAT-AGGGCAAAGAAAAGATTT-CATGCAAAAGAAAATCATCAATATCATTT
* * * * * *
1220090 ATCTTAATGAGGAAAATGTGTTTATAGTACCTAATCACAAAATGAATGAACATCATCACTACAAT
255 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * * * * *
1220155 CTATGTTTGTCTCATTTAAGGCACGAACTAAGACTTTATAAAAGTTGG-GAGGAAAAAAGCCTTT
320 CCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTG-GGAAAAAAGCCTTT
* * * * * * * * *
1220219 CTTGCAAAACCGAAGCATTAAATGTCATGTATCCTAATGAGAGGACTACGTTTATAGTGCCTAAT
384 CTTGCGAAACCAAAACA-TCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT
* * *
1220284 CCTGAAAAGAATGGGGACTAGCATGAC
448 CCTGAAAAGAATGGGGATTAGTATGAG
* * * *
1220311 TACTCATTTTTGTCTTATTTAAGAGAAAAACTTTGATT-TATCAAAAACGGTGGAAAGAAAAGCT
1 TATTCATGTTTGTCTTATTGAAGAGACAAACTTTGATTCTATCAAAAA-GGTGGAAAGAAAAGCT
* * * *
1220375 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATTAAGAGAATGTGTTTTTGG-TTCCC
65 TTTCTTGTGACACCAAAGCATCAATGTCATGTGTCCTAATGAAGGGAATGTG-TTTTGGCTTCCC
* *
1220439 AATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTCTCTTATTTAAGGGATTAACTTTG
129 AATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTG
*
1220504 ATTTAAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATC
194 ATTTTAAGGAAAATAGGGCAAAGAAAAGA-TTTCATGCAAAAGAAAATCATCAATATCATTTATC
* * * * *
1220569 CTAACGAGAAGAATGTGTTTATAGTGCCTTATCAGAAAATGAATGAAGATCATTACTAGAATCTA
258 CTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
** * * * *
1220634 CATTTGTCTCATTTGAGGCATAAACTTAGACTTTTCAAAAATTGGTGGGGAAAATGCCTTTCTTG
323 TGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTG
* * *
1220699 CGATACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTTTGTTTATGGTGCCTAA-CCTTA
388 CGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCC-TG
1220763 AAAAGAATGGGGATTAGTATGAG
452 AAAAGAATGGGGATTAGTATGAG
* * * * * * * *
1220786 TATTTATGTTTGTCTTATTGAAGAGATATATTTTAATTCTATCAAAAATGTGAAAATAAAAGCTT
1 TATTCATGTTTGTCTTATTGAAGAGACAAACTTTGATTCTATCAAAAAGGTGGAAAGAAAAGCTT
* *
1220851 TTCATGTGACACCAAAGCATCACTGTCATGTGTCCTAATGAAGGGAATGTGTTTTGGCTTCCCAA
66 TTCTTGTGACACCAAAGCATCAATGTCATGTGTCCTAATGAAGGGAATGTGTTTTGGCTTCCCAA
* * * * *
1220916 TCTTGAAAAGAATGGAGACTGTTATGATAATCGATTG-TAGTCTTCTTTAATGGATGAACTTTGA
131 TCTTGAAAAGAATGGAGACTATTATGAGAATCGA-TGCTTGTCTTATTTAAGGGATGAACTTTGA
* * *
1220980 TTTTATA-GAAAATACGACAAAGAAAAGATTCTCATGCAAATGAAAATCATCAATATCATTTATC
195 TTTTA-AGGAAAATAGGGCAAAGAAAAGATT-TCATGCAAAAGAAAATCATCAATATCATTTATC
* * * * *
1221044 CTAATGAGGAGAAT-TTTTTGTAGCGCCTAATCAGAAAATGAATGAAGATCATTACTAGAATCAA
258 CTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
* * *
1221108 TGTTTGTCTCATTTAAGGTACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTG
323 TGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTG
* * * * ** *
1221173 CGATACCAAAGCATCAATATTGTGTATCCTAATGAGAAGACTATGTTTATGGGGCCTCCTCGTGA
388 CGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGA
*
1221238 AAAGAATGGAGATTAGTATGAG
453 AAAGAATGGGGATTAGTATGAG
* * * *
1221260 TATTCACGTTTGTCTTATTCACGAGACAAACTTTGATTCTA-CAAAAAACGGTTGAAAGAAAAGC
1 TATTCATGTTTGTCTTATTGAAGAGACAAACTTTGATTCTATC-AAAAA-GGTGGAAAGAAAAGC
* * * *
1221324 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTTT-TCGTTCC
64 TTTTCTTGTGACACCAAAGCATCAATGTCATGTGTCCTAATGAAGGGAATGTGTTTTGGC-TTCC
* ** ** ** * * *
1221388 CAATATTGAAAAGAATGGAGACCGTTGCGAGAATTAAAGCTTGTCTTATTTAAGGGATGGATTTT
128 CAATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTT
* * * *
1221453 GATTTCAAGGAAAATAGGGCAAAGCAAAGATTTCCATGCAAAAGAAAATCATCAACA-CTGTTTA
193 GATTTTAAGGAAAATAGGGCAAAGAAAAGATTT-CATGCAAAAGAAAATCATCAATATC-ATTTA
* * * * * ** * *
1221517 TCCTAATAAGCAGAATGTCTTTATAGTGCCTTATCAGAAAATGAAAAAAGGTCATTACTAGAATT
256 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
* *
1221582 CATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGAGAAAAAAACCTTTCT
321 CATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCT
*
1221647 TGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCT
386 TGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT
* * *
1221712 GAAAGGGATGGGGATTAGTATTAG
451 GAAAAGAATGGGGATTAGTATGAG
* * *
1221736 TATTCATGTTTGTCTTATTGAAGAGACAAATTTTAAGTCTATCAAAAACGGTGGAAAGAAAAGCT
1 TATTCATGTTTGTCTTATTGAAGAGACAAACTTTGATTCTATCAAAAA-GGTGGAAAGAAAAGCT
* * * * * *
1221801 TTTCTTGTAACACGAAAGCATCAATGTCATGTGTCCTAATAAAGGGGATGTGTTTTAGCTTCCTA
65 TTTCTTGTGACACCAAAGCATCAATGTCATGTGTCCTAATGAAGGGAATGTGTTTTGGCTTCCCA
* * ** * *
1221866 TTCTTGAAACA-AATGGAGACTGTTACCAAAATCGATGCTTGTCATATTT-AGGGTATGAACTTT
130 ATCTTGAAA-AGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAGGG-ATGAACTTT
* * * * *
1221929 GATTTCATGGAAAATAGGGCAAAGAAAAGATTTCCACGC---AGAACAATCATCTATATCCTTTA
193 GATTTTAAGGAAAATAGGGCAAAGAAAAGATTT-CATGCAAAAGAA-AATCATCAATATCATTTA
* * *
1221991 TCCTAATGAAGAAAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATC
256 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
* * ** * * * * *
1222056 CATATTTGACTCATTTGAGGCATGAACATAGACTTTATAATAATTAGTGGGAAAAATGCCTTTCT
321 CATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCT
* * * * * * *
1222121 TGTGAAACCAAAACATTAATATCATGTATCATAATGA-AATGATTATGTTTATGCTGCCTAATTC
386 TGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAA-GACTATGTTTATGGTGCCTAATCC
* * * *
1222185 TTAGAAGAATAGAGA-TAGTATGAG
450 TGAAAAGAATGGGGATTAGTATGAG
* * *
1222209 TATTCATGTTTGTCTTATTTAAGAGACATACTTTGATTCTATCAAAAACGGTGG-ACGAAAAAGC
1 TATTCATGTTTGTCTTATTGAAGAGACAAACTTTGATTCTATCAAAAA-GGTGGAAAG-AAAAGC
* *
1222273 TTTTCTTGTGACACCAAAGCATCAATGTCTTATGTCCTAATGAAGGGAATGTGTTTTGGCTTCCC
64 TTTTCTTGTGACACCAAAGCATCAATGTCATGTGTCCTAATGAAGGGAATGTGTTTTGGCTTCCC
* * * *
1222338 AATCTTGAAAAGAATGGAGACTACTATGA-AGATCGATGCTTCTCATATTTATA-GTATGAACTT
129 AATCTTGAAAAGAATGGAGACTATTATGAGA-ATCGATGCTTGTCTTATTTA-AGGGATGAACTT
*
1222401 TGATTTTAAGGAAAATAAGGCAAAGACAAA-ATTTTCATGCAAAA-AAAATCATCAATATCATTT
192 TGATTTTAAGGAAAATAGGGCAAAGA-AAAGA-TTTCATGCAAAAGAAAATCATCAATATCATTT
*
1222464 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGGTCATTACTAGAAT
255 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * * * *
1222529 CCGA-GTTTGACTTATTTGAGGCACAAACTTAGACTTTATAAAAATTGGTCGGAAAAATGCCTTT
320 CC-ATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTT
* ** * * * *
1222593 CTTGCAAAACCAAGGCGTTAATATCGTGTATTCTACTGAGAAGACTATGTTTATGGTGCCTAATC
384 CTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
* *
1222658 CTGAAAAGAATGGGGATTAGTATAAC
449 CTGAAAAGAATGGGGATTAGTATGAG
* * * *
1222684 TATTCATATTTGTCTTATTGAAGAGACAAATTTTAATTCTATCAAAAACGTGGAAA-AAAAGGCT
1 TATTCATGTTTGTCTTATTGAAGAGACAAACTTTGATTCTATCAAAAAGGTGGAAAGAAAA-GCT
* **
1222748 TTTCTTATGACACCAAAGCATCGCTGTCATGTGTCCTAATGAAGGGAATGTGTTTTGGCTT-CCA
65 TTTCTTGTGACACCAAAGCATCAATGTCATGTGTCCTAATGAAGGGAATGTGTTTTGGCTTCCCA
* * *
1222812 ATCTTGAAAAGAATGGAGACTATTACGATAATCGATGCTAGTCTTATTTAAGGGATGAACTTTGA
130 ATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA
* * * *
1222877 TTTTATA-GAAAATACGGCAAAGAAAATATTTCCATGCAAAATAAAATCGTCAATATCATTTATC
195 TTTTA-AGGAAAATAGGGCAAAGAAAAGATTT-CATGCAAAAGAAAATCATCAATATCATTTATC
* * * * *
1222941 CTAATGAGGAGAATTTGTTTATAGTGCCTAATAAGAAAATGAATTAAGATCATTACTAGAATCAA
258 CTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
* * * *
1223006 TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTTCAAAAATTGGTCGAAAAAAAGCCTTTCTTG
323 TGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTG
* * * * * * * *
1223071 TGATACCAAAGCATCAATATCGTGTATCCTGATGAGAAAACTATGTTTAT-GTGGCCCACTCCTA
388 CGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGT-GCCTAATCCTG
*
1223135 AAAAGAATGGAGATTAGTATGAG
452 AAAAGAATGGGGATTAGTATGAG
* * * * * * *
1223158 TATTCACGTTTGTCTTTTTCAGGAGATAAACTTTGATTCTATAAAAAATGGTTGAAAGAAAAGCT
1 TATTCATGTTTGTCTTATTGAAGAGACAAACTTTGATTCTATCAAAAA-GGTGGAAAGAAAAGCT
* **** * * * *
1223223 TTTCTTGCGACATTGGAGCATCAACGTCATGTATCCTAATAAAGGGAATGTGTTTTTGG-TTCCT
65 TTTCTTGTGACACCAAAGCATCAATGTCATGTGTCCTAATGAAGGGAATGTG-TTTTGGCTTCCC
** * * * *
1223287 AATCTTGAAAAGAATGGAGA-TAGTTATGAGAATTAAGGCTTGTCTTTTTTAAGGGATGGATTTT
129 AATCTTGAAAAGAATGGAGACTA-TTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTT
* * * *
1223351 GATTTCAAGGAAAATAGGGCAAAGCAAAGATTTCCATGCAAAAGAAAATCATCAACA-CTGTTTA
193 GATTTTAAGGAAAATAGGGCAAAGAAAAGATTT-CATGCAAAAGAAAATCATCAATATC-ATTTA
* * * * * * * * * *
1223415 TCCTAATGAGCAGAATGTGTTTATAATACCTTATCCCAAAATGAAAGAAGGTCTTTACTGGAATT
256 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
* *
1223480 CATGTTTGTCTCATTTGAGGAACAAACTTAGACTTTACAAAAATTGGTGAGAAAAAAGCC--T-T
321 CATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCT
* *
1223542 T-CAAAACCAAAACATCAATATCGTGTATCCTATTGAGAAGACTATGTTTATGGTGCCTAATCCT
386 TGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT
* *
1223606 GAAAGGAATGGGGATTAGTATGAC
451 GAAAAGAATGGGGATTAGTATGAG
* * *
1223630 TATTCATGTGTGTCTTATTGAAGAGACAAATTTTAAGTT-TATCAAAAACGGTGGAAAGAAAAGC
1 TATTCATGTTTGTCTTATTGAAGAGACAAACTTTGA-TTCTATCAAAAA-GGTGGAAAGAAAAGC
* * * * * *
1223694 TTTTCTTGTAACGCGAAAGCATCAATGTCATGTGTCCTAATAAAGGGGATGTGTTTTAGCTTCCC
64 TTTTCTTGTGACACCAAAGCATCAATGTCATGTGTCCTAATGAAGGGAATGTGTTTTGGCTTCCC
* * * * * *
1223759 ATTCCTGAAACA-AATGGAGACTGTTATGAGAATCGATGCTTGCCATATTT-AGGGTATAAACTT
129 AATCTTGAAA-AGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAGGG-ATGAACTT
* * ** * * *
1223822 TGATTTCATGGAAAATAGGGCAAAGAAAAGAATTTCACACAAAA-AAGATCATCTATATCCTTTA
192 TGATTTTAAGGAAAATAGGGCAAAGAAAAG-ATTTCATGCAAAAGAAAATCATCAATATCATTTA
* * * *
1223886 TCCTAATGAAGAGAATGTGTTCATAGTGTCTAATCACAAAATGAATAAAGATCATTACTAGAATC
256 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
* * * * * * *
1223951 CATATTTGTCTCATTTAAGGCACTAACATAAACTTTACAAAAATTAGCGGGAAAAATA-CCTTTC
321 CATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAAAA-AGCCTTTC
* * * * ** * *
1224015 TTGTGAAACCAAAACATCAATATCATGTATCATAATGA-AATGATTATGTTTATACTGGCTAATT
385 TTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAA-GACTATGTTTATGGTGCCTAATC
* * * *
1224079 CTTAGAAGAATAGAGA-TAGTATGAG
449 CTGAAAAGAATGGGGATTAGTATGAG
* * * *
1224104 TATTCATGTTTGTCTTATTTAAGAGACATACTTTGATTCTATCAAAAACGTTGGACAGAAAAGCT
1 TATTCATGTTTGTCTTATTGAAGAGACAAACTTTGATTCTATCAAAAA-GGTGGAAAGAAAAGCT
* * *
1224169 TTTCTTGTGACACGAAAACATCAATGTCATGTGTCCTAATGAAGGGAATGTGTTTTAGCTTCCCA
65 TTTCTTGTGACACCAAAGCATCAATGTCATGTGTCCTAATGAAGGGAATGTGTTTTGGCTTCCCA
* * * * *
1224234 ATCTTGAAAAGAATGGAGACTACTATGAGAATCGATGCTTCTCATATTTATGGTATGAACTTTGA
130 ATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA
* * * *
1224299 TTTTAAGGAAAATAAGGCAAAGAAAAAATTTTCATGGAAAA-AAAATCATTAATATCATTTATCC
195 TTTTAAGGAAAATAGGGCAAAGAAAAGA-TTTCATGCAAAAGAAAATCATCAATATCATTTATCC
* *
1224363 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGGTTATTACTAGAATCCGA
259 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC-A
* * *
1224428 -GTTTGTCTTATTTGAGGCACAAACTTAGACTTTACAAAAATTGGT-CGAAAAAATCCCTTTCTT
323 TGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAAAAA-GCCTTTCTT
* **
1224491 TCGAAACCAAGGCATCAATATCGTGTATCCTACA-GAGAAGACTATGTTTATGGTGCCTAATCCT
387 GCGAAACCAAAACATCAATATCGTGTATCCTA-ATGAGAAGACTATGTTTATGGTGCCTAATCCT
*
1224555 GAAAAGAATGGGGATTAGTATGAC
451 GAAAAGAATGGGGATTAGTATGAG
* * * *
1224579 TATTCATGTTTGTCTTATTGAAGACG-CAAATTTTGATTCTATAAAAAACGTGGAAAAAAAAGCT
1 TATTCATGTTTGTCTTATTGAAGA-GACAAACTTTGATTCTATCAAAAAGGTGGAAAGAAAAGCT
* * * * * *
1224643 TTTCTTGTGACACCAAAGCATCACTATCATGTGTCTTAATAAAGGGAATGTGTTCTGGCTTCCTA
65 TTTCTTGTGACACCAAAGCATCAATGTCATGTGTCCTAATGAAGGGAATGTGTTTTGGCTTCCCA
* * *
1224708 ATCTTGAAAAGAATGGAGACTATTACGATAATCGATGCTAGTCTT-TTTAAGGGATGAACTTTGA
130 ATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA
* * * *
1224772 ---TAA-GAAAATAGGGCAAAGAAAAGATTTTCACGCAAAAGAATATCATCTATATCCTTTATCC
195 TTTTAAGGAAAATAGGGCAAAGAAAAGA-TTTCATGCAAAAGAAAATCATCAATATCATTTATCC
* * * * * * *
1224833 TAATGAAGAAAATGTGTTTATAGTACCTTATCACAATATGAATAAAGATCATTACTAGGATCCAT
259 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* * * * * * *
1224898 ATTTGACTCA-TT-A--C-CGAACATAGACTTTACAAAAATTGGTGAGAAAAATGCCTTTCTTGT
324 GTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGC
* * * * * * * * *
1224958 GAAACCAAAACATCAATATCATGTATCATAACGAGATGATTATGTTTATGCTACCTAATTCT-TA
389 GAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
* *
1225022 GA-AATGGAGATTAGTATGAG
454 AAGAATGGGGATTAGTATGAG
* * * *
1225042 TATTCATGTTTGTCTTATTTAAGAGACATACTTTGATTCTATCAAAAACGATGGACAGAAAAGCT
1 TATTCATGTTTGTCTTATTGAAGAGACAAACTTTGATTCTATCAAAAA-GGTGGAAAGAAAAGCT
* * * *
1225107 TTTCTGGTGACACGAAAGCATCAATGTCATGTGTCCTAATGAAGGGAATGTGTTTCGACTTCCCA
65 TTTCTTGTGACACCAAAGCATCAATGTCATGTGTCCTAATGAAGGGAATGTGTTTTGGCTTCCCA
* ** * *
1225172 ATCTTGAAAAGAATGGAGACTACTACAAGAATCGATGCTTGTCATATTT-AGGGTATAAACTTTG
130 ATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAGGG-ATGAACTTTG
* * *
1225236 ATTTTAAGGAAAATAAGGCAAAGGAAAA-ATTTTCATGCAAAAAAAAAGCATCAATATCATTTAT
194 ATTTTAAGGAAAATAGGGCAAA-GAAAAGA-TTTCATGCAAAAGAAAATCATCAATATCATTTAT
* * *
1225300 CCTAATGAGGAGAATATGTTTATAGTGCGTAATCACAAAATGAATGAAGGTCATTACTAGAATCT
257 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC-
* * *
1225365 GA-GTTTGTCTTATTTGAGGCACAAACTTAGACTTTACAAAAATTGGT-CGAAAAAATGCCTTTC
321 CATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAAAAA-GCCTTTC
** * * *
1225428 TTATGAAACCAAAGCGTCAATATTGTGTATCCTACA-GAGAAGACTATGTTTATGGTGCCTAATC
385 TTGCGAAACCAAAACATCAATATCGTGTATCCTA-ATGAGAAGACTATGTTTATGGTGCCTAATC
*
1225492 CTGAAAAGAATGGGGATTAGTATGAC
449 CTGAAAAGAATGGGGATTAGTATGAG
* * * *
1225518 TATTCGTGTTTGTCTTATTTAAGAGATAAACTTTGACTCTATC
1 TATTCATGTTTGTCTTATTGAAGAGACAAACTTTGATTCTATC
1225561 TGATGAAAAC
Statistics
Matches: 4441, Mismatches: 704, Indels: 211
0.83 0.13 0.04
Matches are distributed among these distances:
462 1 0.00
463 58 0.01
464 114 0.03
465 96 0.02
466 7 0.00
468 4 0.00
469 137 0.03
470 91 0.02
471 124 0.03
472 259 0.06
473 345 0.08
474 1502 0.34
475 706 0.16
476 957 0.22
477 40 0.01
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (474 bp):
TATTCATGTTTGTCTTATTGAAGAGACAAACTTTGATTCTATCAAAAAGGTGGAAAGAAAAGCTT
TTCTTGTGACACCAAAGCATCAATGTCATGTGTCCTAATGAAGGGAATGTGTTTTGGCTTCCCAA
TCTTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT
TTTAAGGAAAATAGGGCAAAGAAAAGATTTCATGCAAAAGAAAATCATCAATATCATTTATCCTA
ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
TTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGA
AACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA
GAATGGGGATTAGTATGAG
Found at i:1227225 original size:42 final size:42
Alignment explanation
Indices: 1227170--1227288 Score: 166
Period size: 42 Copynumber: 2.8 Consensus size: 42
1227160 TAGCCCTCAA
* * * *
1227170 AGAGAAAGAAGAGAGAGGATGGATGATAGGAGGAGAGATAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
1227212 AGAGATAGTAGAGATAAGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
1227254 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
1227289 GAGAGAAGAA
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 67 1.00
ACGTcount: A:0.44, C:0.02, G:0.45, T:0.10
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:1229362 original size:12 final size:11
Alignment explanation
Indices: 1229340--1229415 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
1229330 AGAGAAAGAA
*
1229340 GAGAGAGGAGG
1 GAGATAGGAGG
1229351 GATGATAGGAGG
1 GA-GATAGGAGG
*
1229363 AGAGACAGGA--
1 -GAGATAGGAGG
*
1229373 GAGATAGTA--
1 GAGATAGGAGG
1229382 GAGATAGGAGG
1 GAGATAGGAGG
1229393 GATGATAGGAGG
1 GA-GATAGGAGG
*
1229405 AGAGACAGGAG
1 -GAGATAGGAG
1229416 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:1229372 original size:24 final size:24
Alignment explanation
Indices: 1229339--1229424 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
1229329 AAGAGAAAGA
*
1229339 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
1229363 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
1229381 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
1229405 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
1229425 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:1229391 original size:42 final size:42
Alignment explanation
Indices: 1229330--1229448 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
1229320 TAGCCCACAA
* *
1229330 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
1229372 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
1229414 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
1229449 GAGAGAAGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.43, C:0.03, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:1231403 original size:15 final size:15
Alignment explanation
Indices: 1231365--1231404 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
1231355 GAATACAAAA
1231365 AAAAAAAAAAGAAAG
1 AAAAAAAAAAGAAAG
* * *
1231380 AATACAAAAAGAGAG
1 AAAAAAAAAAGAAAG
1231395 AAAAAAAAAA
1 AAAAAAAAAA
1231405 CCAGTATTTG
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.82, C:0.03, G:0.12, T:0.03
Consensus pattern (15 bp):
AAAAAAAAAAGAAAG
Found at i:1232173 original size:12 final size:11
Alignment explanation
Indices: 1232151--1232226 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
1232141 AGAGAAAGAA
*
1232151 GAGAGAGGAGG
1 GAGATAGGAGG
1232162 GATGATAGGAGG
1 GA-GATAGGAGG
*
1232174 AGAGACAGGA--
1 -GAGATAGGAGG
*
1232184 GAGATAGTA--
1 GAGATAGGAGG
1232193 GAGATAGGAGG
1 GAGATAGGAGG
1232204 GATGATAGGAGG
1 GA-GATAGGAGG
*
1232216 AGAGACAGGAG
1 -GAGATAGGAG
1232227 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:1232183 original size:24 final size:24
Alignment explanation
Indices: 1232150--1232235 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
1232140 AAGAGAAAGA
*
1232150 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
1232174 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
1232192 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
1232216 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
1232236 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:1232202 original size:42 final size:42
Alignment explanation
Indices: 1232141--1232259 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
1232131 TAGCCCTCAA
* *
1232141 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
1232183 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* * *
1232225 AGAGATAATAGAGAGAGGAGGGATGACAGAAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
1232260 GAGAGAAGAA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.44, C:0.03, G:0.45, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:1247026 original size:158 final size:157
Alignment explanation
Indices: 1246348--1247046 Score: 424
Period size: 159 Copynumber: 4.4 Consensus size: 157
1246338 TTTCGAGCAT
** * * * * * * *
1246348 AACCAAAGTATCAATATGATGTATCCTAAT-TAGAAGACTATATTTATGCTGCCTAATCCTGAAA
1 AACCAAAACATCAATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAATCTTGAAA
* * * * * *
1246412 AGAATAGAGATTAGTATGAGTATTCACGTTTGTCTTATTGAAGTGACAAACTTTGATTCTATCAA
65 AGAA-AGGGATTAGTATAACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA
*
1246477 AAACGGTGGAAAGAAAAGATTTTCTTGCGA
129 AAATGGTGGAAAGAAAAGATTTTCTTGC-A
* * * * ** * * * * *
1246507 CACCAAAGCGTCAATGTCACATATCTTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAA
1 AACCAAAACATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCTTGAAAA
* * * * * * * * * *
1246572 G-AATGGAGTCT-GCCACAA-GAATCGATGCTTATCTTATTTAAGTGATC-AGCTTTGATTTTAA
66 GAAAGGGA-T-TAG-TATAACTATTC-ATGTTTGTCTTATTTAAGAGA-CAAACTTTGATTCT-A
** * *
1246633 GGAAAAAAT-GTTG-AAGAAAAGATTTTCATGCA
125 -TCAAAAATGGTGGAAAGAAAAGATTTTCTTGCA
** * * * * *
1246665 AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGTCTAATCCT-AAA
1 AACCAAAA-CATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCTTGAAA
** * * * * * *
1246729 ATGAGTGAAGATCATTAGTAGAAC---CCAAGTTTGTCTCATTT--GAGGCATGAACTTAGACTT
65 A-GA---AAG-GGATTAGTATAACTATTCATGTTTGTCTTATTTAAGAGACA--AACTTTGA-TT
* * **
1246789 -TAT-AAAAATTGGTGGGAA-AAATGCCTTTCTTGCGA
122 CTATCAAAAA-TGGTGGAAAGAAAAGATTTTCTTGC-A
* * * * *
1246824 AACCAAAACATCAGTATCTTGTATCCTAATG-TGTAGACTATGTTTATGGTGCCTAATCTTGAAA
1 AACCAAAACATCAATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAATCTTGAAA
1246888 AGAAAGGGATTAGTATAACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAA
65 AGAAAGGGATTAGTATAACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAA
* *
1246953 AATGGTTGAAAGAAAAGTTTTTCTTGCA
130 AATGGTGGAAAGAAAAGATTTTCTTGCA
* * * * *
1246981 ACACCAAAACATTAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGTTCCCAATCTTGAAA
1 A-ACCAAAACATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCTTGAAA
1247046 A
65 A
1247047 TAATGGAGAC
Statistics
Matches: 396, Mismatches: 107, Indels: 75
0.69 0.19 0.13
Matches are distributed among these distances:
154 10 0.03
155 3 0.01
156 8 0.02
157 40 0.10
158 142 0.36
159 169 0.43
160 10 0.03
161 5 0.01
162 4 0.01
163 4 0.01
164 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.33
Consensus pattern (157 bp):
AACCAAAACATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCTTGAAAA
GAAAGGGATTAGTATAACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAA
ATGGTGGAAAGAAAAGATTTTCTTGCA
Found at i:1247041 original size:475 final size:476
Alignment explanation
Indices: 1245522--1248423 Score: 3255
Period size: 475 Copynumber: 6.2 Consensus size: 476
1245512 GTTGTCATCA
* * * * * * *
1245522 CTATCAAAAATAGTGGAGAGAAAAGCTTTT-TTGGTGGCACCTAAGGA-AAATGTCATGTATCCT
1 CTATCAAAAATGGTGGAAAGAAAAGCTTTTCTT-GCGACACCAAAGCATCAATGTCATGTATCCT
* * *
1245585 AATGAAGGGAATGTGTTTTTGG-TCCCAATCTAGAAAAGAATGGAGACTATCA-AGAGAATCGAT
65 AATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACA-AGAATCAAT
* * * *
1245648 GTTTGTCTTATTTAAG-GAATGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTTCAT
129 GCTTGTCTTATTT-AGTGTATGAACTTTGATTTTAAGGAAAAAAGGGCAAAGAAAAGATTTTCAT
* *
1245712 GCAAAAGAAAATCATCAATATCATTTATCTTAATGAGGAGAATGTGTTTATCA-TGCCTAATCCC
193 GCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAT-AGTGCCTAATCAC
** * ***
1245776 AAAATG-GTTGAAGATCATTACTAGAATCCTTGTTTGTCTCATTTAAGGTGTGAACTTAGACTTT
257 AAAATGAG-TGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
* * * **
1245840 ACAAAAATTGGCGGGAGAAATGCCTTTCTTGCGAAACCTAAACATCAATAT-TGTGTATTATAAT
321 ACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCT-TGTATCCTAAT
* * ** * *
1245904 AAGAAGACTATGTTTATGGTGCCTAATTTTGGGAAGAAT-GAAGATTAGTATGAGTAATC-T-TT
385 GAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATAG-GGATTAGTATGAGTATTCATGTT
* *
1245966 TGTATCTTATTTAAGAGACATACTTTGATT
449 TG--TCTTATTGAAGAGACAAACTTTGATT
* * ** * * * *
1245996 CTATCAAAACT-GTGGACAGAAAAGCTTTT-TTAATGACACGACAGCATTAATGTCATTTATCCT
1 CTATCAAAAATGGTGGAAAGAAAAGCTTTTCTT-GCGACACCAAAGCATCAATGTCATGTATCCT
* * * * *
1246059 -ATCGAAGGAAATGCGTTTTTGTTTCCCAATCTTGAAAAGAATGGAGACTGTTACAAGAATCATT
65 AAT-GAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACAAGAATCAAT
* * * *
1246123 GCTTGTCATATTTAGGGTATGAACTTTTATTTT-ACGAAAAATAGGGCAAAGAAAAGA-TTTCTA
129 GCTTGTCTTATTTAGTGTATGAACTTTGATTTTAAGGAAAAA-AGGGCAAAGAAAAGATTTTC-A
* *
1246186 TGTAAAA-AAAATCATCAATATCATTTATCCCAATGAGGAGAAT-TCGTTTATAGTGCCTAATCA
192 TGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT-GTTTATAGTGCCTAATCA
* * * *
1246249 CAAAATAAGTGAAGATCATTAGTAGAATCCATGTTTGTCTAATTTGAGGCACGAACTTAGACTTT
256 CAAAATGAGTGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
* * * ** ** **
1246314 ACAAAAATTGGTTGAAAAAATGGCTTTCGAGC-ATAACCAAAGTATCAATATGATGTATCCTAAT
321 ACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGA-AACCAAAACATCAATATCTTGTATCCTAAT
* * * * * *
1246378 TAGAAGACTATATTTATGCTGCCTAATCCTGAAAAGAATAGAGATTAGTATGAGTATTCACGTTT
385 GAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTT
*
1246443 GTCTTATTGAAGTGACAAACTTTGATT
450 GTCTTATTGAAGAGACAAACTTTGATT
* * * ** *
1246470 CTATCAAAAACGGTGGAAAGAAAAGATTTTCTTGCGACACCAAAGCGTCAATGTCACATATCTTA
1 CTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTA
* *** *
1246535 ATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGTCTGCCACAAGAATCGATGC
66 ATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACAAGAATCAATGC
* * * * ***
1246600 TTATCTTATTTAAGTG-ATCAGCTTTGATTTTAAGGAAAAAATGTTGAAGAAAAGATTTTCATGC
131 TTGTCTTATTT-AGTGTATGAACTTTGATTTTAAGGAAAAAAGGGCAAAGAAAAGATTTTCATGC
*
1246664 AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGTCTAATC-CTAA
195 AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC-AA
* * * *
1246728 AATGAGTGAAGATCATTAGTAGAACCCAAGTTTGTCTCATTTGAGGCATGAACTTAGACTTTATA
259 AATGAGTGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
* * *
1246793 AAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAGTATCTTGTATCCTAATGTGT
324 AAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCTTGTATCCTAATGAGA
* *
1246858 AGACTATGTTTATGGTGCCTAATCTTGAAAAGAA-AGGGATTAGTATAACTATTCATGTTTGTCT
389 AGACTATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCT
*
1246922 TATTTAAGAGACAAACTTTGATT
454 TATTGAAGAGACAAACTTTGATT
* * * * *
1246945 CTATCAAAAATGGTTGAAAGAAAAGTTTTTCTTGCAACACCAAAACATTAATGTCATGTATCCTA
1 CTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTA
* * *
1247010 ATGAAGAGAATGTGTTTTTGGTTCCCAATCTTGAAAATAATGGAGACTATTACGAGAATCAATGC
66 ATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACAAGAATCAATGC
*
1247075 TTGTC------------T---C----ATTTTAAGGAAAATAA-GGCAAAGAAAAGATTTCCATGC
131 TTGTCTTATTTAGTGTATGAACTTTGATTTTAAGGAAAA-AAGGGCAAAGAAAAGATTTTCATGC
* * * * *
1247120 AAAAGAGAATCATCAATATCGTTTATCCTAATAAGCAGAATGTGTTTATAGTGCCTATTCACAAA
195 AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAA
* * ** *
1247185 ATGACTGAGGATCATTTGTAGAAT-CAATGTTTGTCTCATTTTAGGCACGAACTTAGACTTTACA
260 ATGAGTGAAGATCATTACTAGAATCCAA-GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
* * * * * *
1247249 AAAATTGGTGAGAAAAAAGCTTTTGTTGCAAAACCAAAACATCAATATCATGTATCCTAATGAGA
324 AAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCTTGTATCCTAATGAGA
* *
1247314 AGACAATGTTTATGGTGCCTAATC-TGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCT
389 AGACTATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCT
* * * *
1247378 TACTGAAGAGACAAATTTTAAGT
454 TATTGAAGAGACAAACTTTGATT
* ** * *
1247401 CTATCAAAAATGGTGGAAAGAAAAGCTCTTCTTGCGACATGAAAGCATCAATGACATGTGTCCTA
1 CTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTA
* * * *
1247466 ATGAAGGGGATGTG-TTTTGGCTTCCCATTCTTGAAACGAATGGAGACTATTACGAGAATCAATG
66 ATGAAGGGAATGTGTTTTTGG-TTCCCAATCTTGAAAAGAATGGAGACTATTACAAGAATCAATG
* * * * * *
1247530 TTTGTCATATTTAGGGTATGAACTTTGATTTCAAGGAAAATAGGGCAAAGAAAAGATTTTCACGC
130 CTTGTCTTATTTAGTGTATGAACTTTGATTTTAAGGAAAAAAGGGCAAAGAAAAGATTTTCATGC
* *
1247595 AAAAGAAAATCATCAATATCATTTATCCTAATGTGGAGAATGTGTTTATAGTGCCCAATCACAAA
195 AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAA
* * * * *
1247660 ATGAATGAAGATCATTACTAGAATCC-A-TATTGACTAATTTGAGGCATGAACTTAGACGTTACA
260 ATGAGTGAAGATCATTACTAGAATCCAAGT-TTGTCTCATTTGAGGCACGAACTTAGACTTTACA
* * *
1247723 AAAATTGTTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCATAATGA-A
324 AAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCTTGTATCCTAATGAGA
* *
1247787 ATGACTATGTTTATGGTGCCTAATACTT-AGAAGAAT-GGAGATTAGTATGAGTATTCAAGTTTG
389 A-GACTATGTTTATGGTGCCTAAT-CTTGAAAAGAATAGG-GATTAGTATGAGTATTCATGTTTG
* * *
1247850 TCTTATTTAAGATACATACTTTGATT
451 TCTTATTGAAGAGACAAACTTTGATT
** * * * *
1247876 CTATCAAAAACAGTGGACAGAAAAGCTTTTCCTGTGACACCAAAGCATCAATGTCATGTATCGTA
1 CTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTA
* * **
1247941 ATGAAGGGAATGTGTTTTTGGTTCCCAATCTAGAAAAGAATGGAGACTTTTATGAGAATCAATGC
66 ATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACAAGAATCAATGC
* * * * *
1248006 TTGTCTTATTTAATGGATGAACTTTGATTTCAAGTAAAATAGGGCAAAGAAAAGA-TTTCGATGC
131 TTGTCTTATTTAGTGTATGAACTTTGATTTTAAGGAAAAAAGGGCAAAGAAAAGATTTTC-ATGC
* * *
1248070 AAATGAAAATCATCAATATCATTTATCCTAATGAGTAGAATGTGTTTATAGTGCTTAATCACAAA
195 AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAA
* * * ** * * *
1248135 ATAAATAAAGATCATTACTAGAATTTATGTTTGTCTCACTTGAGGCACGAACTTAGACTTCACAA
260 ATGAGTGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAA
* * * * * *
1248200 AAATTGGTGAGAGTAAA-GCTTTTGTTGCAAAATCAAAACATCAATATCTTGTATCCTAATGAGA
325 AAATTGGTGGGA-AAAATGCCTTTCTTGCGAAACCAAAACATCAATATCTTGTATCCTAATGAGA
* * * * * * * *
1248264 AAACTATGTTTATGATGCCTAATCCTGAAAACAATGGGGATTAGTATGAGCATTAATGTTTGTGT
389 AGACTATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCT
* *
1248329 TATTGAAAAGACAAACTTTAATT
454 TATTGAAGAGACAAACTTTGATT
* * * * * ** *
1248352 ATATCAAAAACT-ATAGAAAGAAAAGCTTTTGTTGCAACATGAAAGCATCAATGTCATGTGTCCT
1 CTATCAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT
*
1248416 AAAGAAGG
65 AATGAAGG
1248424 AGATTGTTAT
Statistics
Matches: 2052, Mismatches: 311, Indels: 128
0.82 0.12 0.05
Matches are distributed among these distances:
455 18 0.01
456 377 0.18
457 3 0.00
460 1 0.00
463 1 0.00
468 1 0.00
471 1 0.00
473 35 0.02
474 396 0.19
475 783 0.38
476 426 0.21
477 10 0.00
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.32
Consensus pattern (476 bp):
CTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTA
ATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACAAGAATCAATGC
TTGTCTTATTTAGTGTATGAACTTTGATTTTAAGGAAAAAAGGGCAAAGAAAAGATTTTCATGCA
AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAA
TGAGTGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAA
AATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCTTGTATCCTAATGAGAAG
ACTATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTA
TTGAAGAGACAAACTTTGATT
Found at i:1248057 original size:159 final size:157
Alignment explanation
Indices: 1247130--1248123 Score: 451
Period size: 159 Copynumber: 6.3 Consensus size: 157
1247120 AAAAGAGAAT
* * * * * * * *
1247130 CATCAATATCGTTTATCCTAAT-AAGCAGAATGTGTTTATAGTGCCTATTC-ACAAAATGACT-G
1 CATCAATATCATGTATCCTAATGAAG-GGAATGTGTTTATGGTGCCCAATCTAGAAAA-GAATGG
* * * * *
1247192 AGGATCATT-TGTAGAATCAATGTTTGTCTCATTTTAGGCACGAACTTAGACTTTACAA-AAATT
64 A-GAT-ATTATG-AGAATCAATGTTTGTCTTATTTAAGGCATGAACTTTGA-TTT-CAATAAAAT
* ** * *
1247255 GGT-GAGAA-AAAAGCTTTTGTTGCAAAACCAAAA
124 AGTGGA-AAGAAAAGCTTTTCCTGCGAAACCAAAG
* * *
1247288 CATCAATATCATGTATCCTAATG-AGAAGACA-ATGTTTATGGTGCCTAATCT-GAAAAGAATGG
1 CATCAATATCATGTATCCTAATGAAG-GGA-ATGTGTTTATGGTGCCCAATCTAGAAAAGAATGG
* * * * * * *
1247350 GGATTAGTATGAGTATTC-ATGTTTGTCTTACTGAAGAGACA--AATTTTAAGTCTATC-A-AAA
64 AGA-TATTATGAG-AATCAATGTTTGTCTTATTTAAG-G-CATGAACTTTGA-T-T-TCAATAAA
* * * * **
1247410 ATGGTGGAAAGAAAAGCTCTTCTTGCGACATGAAAG
122 ATAGTGGAAAGAAAAGCTTTTCCTGCGAAACCAAAG
* * * * * *
1247446 CATCAATGA-CATGTGTCCTAATGAAGGGGATGTGTTT-TGGCTTCCCATTCTTGAAACGAATGG
1 CATCAAT-ATCATGTATCCTAATGAAGGGAATGTGTTTATGG-TGCCCAATCTAGAAAAGAATGG
* * * * *
1247509 AGACTATTACGAGAATCAATGTTTGTCATATTTAGGGTATGAACTTTGATTTCAAGGAAAATAG-
64 AGA-TATTATGAGAATCAATGTTTGTCTTATTTAAGGCATGAACTTTGATTTCAA-TAAAATAGT
* * ** *
1247573 GGCAAAGAAAAGATTTTCAC-GCAAAAGAAAAT
127 GG-AAAGAAAAGCTTTTC-CTGCGAAACCAAAG
* * * * *
1247605 CATCAATATCATTTATCCTAATG-TGGAGAATGTGTTTATAGTGCCCAATC-ACAAAATGAATGA
1 CATCAATATCATGTATCCTAATGAAGG-GAATGTGTTTATGGTGCCCAATCTAGAAAA-GAATGG
* * * * * * * *
1247668 AGATCATTACT-AGAATCCAT-ATTGACTAATTTGAGGCATGAACTTAGACGTT-ACA-AAAATT
64 AGAT-ATTA-TGAGAATCAATGTTTGTCTTATTTAAGGCATGAACTTTGA-TTTCA-ATAAAATA
* * * * *
1247729 GTTGGGAA-AAATGCCTTTCTTGCGAAACCAAAA
125 G-TGGAAAGAAAAGCTTTTCCTGCGAAACCAAAG
* * ** * * *
1247762 CATCAATATCGTGTATCATAATGAAATGACTATGTTTATGGTGCCTAATACTTAG--AAGAATGG
1 CATCAATATCATGTATCCTAATGAAGGGAATGTGTTTATGGTGCCCAAT-C-TAGAAAAGAATGG
* * * *
1247825 AGATTAGTATGAGTATTCAA-GTTTGTCTTATTTAA-G-ATACATACTTTGA-TTCTATCAAAAA
64 AGA-TATTATGAG-AATCAATGTTTGTCTTATTTAAGGCAT-GA-ACTTTGATTTCAAT--AAAA
* * * *
1247886 CAGTGGACAGAAAAGCTTTTCCTGTGACACCAAAG
123 TAGTGGAAAGAAAAGCTTTTCCTGCGAAACCAAAG
* * * *
1247921 CATCAATGTCATGTATCGTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTAGAAAAGAATGGAG
1 CATCAATATCATGTATCCTAATGAAGGGAATGTGTTTATGGTGCCCAATCTAGAAAAGAATGGAG
* *
1247986 ACTTTTATGAGAATCAATGCTTGTCTTATTTAATGG-ATGAACTTTGATTTCAAGTAAAATAG-G
66 A-TATTATGAGAATCAATGTTTGTCTTATTTAA-GGCATGAACTTTGATTTCAA-TAAAATAGTG
* * ** *
1248049 GCAAAGAAAAG-ATTTCGATGC-AAATGAAAAT
128 G-AAAGAAAAGCTTTTC-CTGCGAAA-CCAAAG
* * *
1248080 CATCAATATCATTTATCCTAATG-AGTAGAATGTGTTTATAGTGC
1 CATCAATATCATGTATCCTAATGAAG-GGAATGTGTTTATGGTGC
1248124 TTAATCACAA
Statistics
Matches: 620, Mismatches: 153, Indels: 125
0.69 0.17 0.14
Matches are distributed among these distances:
156 8 0.01
157 124 0.20
158 189 0.30
159 287 0.46
160 8 0.01
161 4 0.01
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (157 bp):
CATCAATATCATGTATCCTAATGAAGGGAATGTGTTTATGGTGCCCAATCTAGAAAAGAATGGAG
ATATTATGAGAATCAATGTTTGTCTTATTTAAGGCATGAACTTTGATTTCAATAAAATAGTGGAA
AGAAAAGCTTTTCCTGCGAAACCAAAG
Found at i:1249999 original size:475 final size:472
Alignment explanation
Indices: 1248422--1250232 Score: 2345
Period size: 477 Copynumber: 3.8 Consensus size: 472
1248412 TCCTAAAGAA
* ** * ** *
1248422 GGAGATTGTTATGAGAATCGATGCTTGTCGCATTTATGATATGAACTTTGATTTCAAGGAAAATA
1 GGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATA
* * *
1248487 AGGCAAAGGAAAGATTTTCATGCAAAAAAAAAATCATCAATATCATTTATCCTAATG-AGCAGAA
66 AGGCAAAGAAAAGATTTCCATGC-AAAAGAAAATCATCAATATCATTTATCCTAATGAAG-AGAA
* * * *
1248551 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATATTTGACTCATT
129 TGTGTTTATAGTGCCTAATCACAAAATGAGTGAAGATCATTAGTAGAATCCATGTTTGTCTCATT
* * * *
1248616 TGAGGCACGGACTTAGACTTTA-ACAAAATTGGTGGGAAAAATGCCTTTCTTGTGAAACCAAAAC
194 TGAGGCACGAACTTAGACTTTACA-AAAATTGGTGAGAAAAAAGCCTTTCTTGCGAAACCAAAAC
* * * * *
1248680 ATCAATATCATGTATCATAATGA-AATGAATATGTTTATGGTGCCTAATTCTGAGAAA-AATGGA
258 ATCAATATCGTGTATCATAATGAGAA-GACTATGTTAATGGTGCCTAATCCT-AAAAAGAATGG-
* * *
1248743 GATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACATACTTTGATTCTATCAAAAACTGTG
320 GATTAGTATGAGTATTCATGTTTGTCTTATTGAAGAGACA-ACTTTAATTCTATCAAAAACAGTG
* * *
1248808 GACAGAAAAGCTTTTCCTGTGACACCAAAGCATCAATGTCATGTGTCTTAATGAAGGGAATGTG-
384 GA-A-AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTGTCCTAATGAAGGGAATGTGT
*
1248872 TTTTGGCTTCCCAATCTGGAAAAGAGT
447 TTTTGG-TTCCCAATCTTGAAAAGAGT
* * * * *
1248899 GGAGACTATTACGAGAATCGATGCTTGCCATATTT-AGGGTATGAACTTTTATTTTAAGGAAAAT
1 GGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGG-ATGAACTTTGATTTTAAGGAAAAT
* *
1248963 -AGGACAAAGAAAAGATTTCCATGTAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
65 AAGG-CAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAAGAGAA
* * * **
1249027 TGTGTTTATAGTGCCTAATCAAAAAATGAGTGTAGGTCATTAGTAGAATCCATGTTTGGATCATT
129 TGTGTTTATAGTGCCTAATCACAAAATGAGTGAAGATCATTAGTAGAATCCATGTTTGTCTCATT
* *
1249092 TGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGCAAAAATA-CCTTTCTTGCGGAACCAAAA
194 TGAGGCACGAACTTAGACTTTACAAAAATTGGTGAG-AAAAA-AGCCTTTCTTGCGAAACCAAAA
* * * **
1249156 CATCAATATCGTGTATCATAATGAAAAGATTATGTTTATGGTGCCTAATCCTGGAAAGAATGGGG
257 CATCAATATCGTGTATCATAATGAGAAGACTATGTTAATGGTGCCTAATCCTAAAAAGAAT-GGG
* * * *
1249221 ATTAGTATGACTATTCATGTTTGTCTTATAT-AAGAGATAAGCTTTGATTCTAT-AACAAACGGT
321 ATTAGTATGAGTATTCATGTTTGTCTTAT-TGAAGAGACAA-CTTTAATTCTATCAA-AAACAGT
* * * *
1249284 AGAAAGAAAAGCTTTTCTTGCGACATCAAAGCATCAATGTCTTGTGTCCTAATGGAGGGAATGTG
383 -GGAA-AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTGTCCTAATGAAGGGAATGTG
* *
1249349 TTTTTGGTTCCCAATCTTGAAAAAAAAT
446 TTTTTGGTTCCCAATCTTG-AAAAGAGT
* * * *
1249377 GGAGACTGTTATGAGAATCGATTCTTGTCTTGTTTAAGGGATTAACTTCGA-TTTAATGGAAAAT
1 GGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAA-GGAAAAT
* *
1249441 AGGGCAAGGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT-AAGGAGAA
65 AAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAA-GAGAA
* * * *
1249505 TATGTTTAGAGTGCCTAATCACAAAATGAGTGTAGATCATTAGTAGAATCCATGTATGTCTCATT
129 TGTGTTTATAGTGCCTAATCACAAAATGAGTGAAGATCATTAGTAGAATCCATGTTTGTCTCATT
* * * *
1249570 TGAGGCATGAACTTAGACTTTACAAAAATTGGCGAGAAAAAAGCCTTTTTTGCAAAACCAAAACA
194 TGAGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAAAAAGCCTTTCTTGCGAAACCAAAACA
* *
1249635 TCAATATCGTGTATCCTAATGAGAAGACTATGTTAATGGTGCCTAATCCTAAAAAGATTAGGGAT
259 TCAATATCGTGTATCATAATGAGAAGACTATGTTAATGGTGCCTAATCCTAAAAAGAAT-GGGAT
* *
1249700 TAGTATGAGTATTAATTTTTGTCTTATTGAAGAGACGAACTTTAATTCTATCAAAAACAGTGGAA
323 TAGTATGAGTATTCATGTTTGTCTTATTGAAGAGAC-AACTTTAATTCTATCAAAAACAGTGGAA
* * * * *
1249765 ATAAAGCTTTTCTTGCAACACCAAAGCATAAATGTCACGTATCCTAATGAAGGGATTGTGTTTTT
387 A-AAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTGTCCTAATGAAGGGAATGTGTTTTT
1249830 GGTTCCCAATCTTGAAAAGAGT
451 GGTTCCCAATCTTGAAAAGAGT
** *
1249852 GGAGACTGCCATGAGAATCGATGCTTGTCTTATTTAAGTGATGAACTTTGATTTTAAGGAAAATA
1 GGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATA
* * * *
1249917 AGGCAAAGAAAAGATTTCCATGCAAAAGAAAATGATCATTATCATTTATCCTGATGAAGAGATTG
66 AGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAAGAGAATG
* *
1249982 TGTTTATAGTACCTAATCACAAAATGAGTGAAGATTATTAGTAGAATCCATGTTTGTCTCATTTG
131 TGTTTATAGTGCCTAATCACAAAATGAGTGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTG
* * * * *
1250047 AGGCACGAACCTAGACTTTAGAAAAATTGGTGAGAAAAATGCCTTTCTTTG-GAAATCAAAACTT
196 AGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAAAAAGCCTTTC-TTGCGAAACCAAAACAT
* * *
1250111 CAATATCGTGTATCCTAATGTGAAGACTATGTTTAA-GGTGACTAATCCTAAAAAGAATGAGGAT
260 CAATATCGTGTATCATAATGAGAAGACTATG-TTAATGGTGCCTAATCCTAAAAAGAATG-GGAT
* *
1250175 TAGTATGAGTATTCATGTTTGTCTTATTGAAGAGATAAACTTTAATTCTATCATAAAC
323 TAGTATGAGTATTCATGTTTGTCTTATTGAAGAGA-CAACTTTAATTCTATCAAAAAC
1250233 TAATCAGAAC
Statistics
Matches: 1173, Mismatches: 131, Indels: 62
0.86 0.10 0.05
Matches are distributed among these distances:
474 1 0.00
475 332 0.28
476 225 0.19
477 396 0.34
478 213 0.18
479 6 0.01
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (472 bp):
GGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATA
AGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAAGAGAATG
TGTTTATAGTGCCTAATCACAAAATGAGTGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTG
AGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAAAAAGCCTTTCTTGCGAAACCAAAACATC
AATATCGTGTATCATAATGAGAAGACTATGTTAATGGTGCCTAATCCTAAAAAGAATGGGATTAG
TATGAGTATTCATGTTTGTCTTATTGAAGAGACAACTTTAATTCTATCAAAAACAGTGGAAAAAA
GCTTTTCTTGCGACACCAAAGCATCAATGTCATGTGTCCTAATGAAGGGAATGTGTTTTTGGTTC
CCAATCTTGAAAAGAGT
Found at i:1251898 original size:33 final size:32
Alignment explanation
Indices: 1251858--1251937 Score: 97
Period size: 33 Copynumber: 2.4 Consensus size: 32
1251848 AAAAAGAAAC
1251858 AGGAGAGATAATAGGAGGAGAGATAGGAGAGAT
1 AGGAGAGATAATAGGAGGAGAGA-AGGAGAGAT
* * * *
1251891 AGTAGAGATAAAAGGGATGATAGAAGGAGAGAT
1 AGGAGAGATAATA-GGAGGAGAGAAGGAGAGAT
*
1251924 AGGAGATATAATAG
1 AGGAGAGATAATAG
1251938 AGAGACGAGG
Statistics
Matches: 39, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
32 1 0.03
33 30 0.77
34 8 0.21
ACGTcount: A:0.47, C:0.00, G:0.38, T:0.15
Consensus pattern (32 bp):
AGGAGAGATAATAGGAGGAGAGAAGGAGAGAT
Found at i:1251920 original size:42 final size:42
Alignment explanation
Indices: 1251868--1251961 Score: 134
Period size: 42 Copynumber: 2.2 Consensus size: 42
1251858 AGGAGAGATA
* *
1251868 ATAGGAGGAGAGATAGGAGAGATAGTAGAGATAAAAGGGATG
1 ATAGGAGGAGAGATAGGAGAGATAATAGAGAGAAAAGGGATG
* * **
1251910 ATAGAAGGAGAGATAGGAGATATAATAGAGAGACGAGGGATG
1 ATAGGAGGAGAGATAGGAGAGATAATAGAGAGAAAAGGGATG
1251952 ATAGGAGGAG
1 ATAGGAGGAG
1251962 GAGAGAAGAA
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.45, C:0.01, G:0.40, T:0.14
Consensus pattern (42 bp):
ATAGGAGGAGAGATAGGAGAGATAATAGAGAGAAAAGGGATG
Found at i:1257525 original size:159 final size:158
Alignment explanation
Indices: 1256899--1257525 Score: 439
Period size: 159 Copynumber: 4.0 Consensus size: 158
1256889 CATGGTTGTC
* * * * * *
1256899 ATCAAAAA-CAGTGGAAAGAAAAGCTTATCTTGCGACATCAAAGCATCAA-GTCATGTATCGTAA
1 ATCAAAAATCGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAA
* * * * * *
1256962 TGAAGGGAATGTGTTTTTAGTTCCCAATCTTGAAAAGAATGGAGACTATCACGAGAATCGATACT
66 TGAAGGGAATGTGTTTTTAGTGCCTAATCTTGAAAAGAATGGAGATTATTATGAGAATCGATGCT
* * * * *
1257027 TCTCTAATTTAAGCGATGAACTTTGATTTT
131 TGTCTTATTTAAGGGACGAAC-TT-AATTT
** * * * * * * ** * *
1257057 AAGAAAAATAGG-GCAAAGAAAAGATTTCCGTGCAAAAGAAAATCATCAATATCATTTATCCTAA
1 ATCAAAAATCGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAA
* * * ** * ** *
1257121 TG-AGGAGAATGTGTTTCTAGTGCTTTATC-ACAAAATGAGA-GAAGATCGTTA-GTAGAATCCA
66 TGAAGG-GAATGTGTTTTTAGTGCCTAATCTTGAAAA-GA-ATGGAGATTATTATG-AGAATCGA
* * * * *
1257182 TGTTTTTCTCATTTGAGGTACGAACTTAGATATT
127 TGCTTGTCTTATTTAAGGGACGAACTTA-AT-TT
* * * * * * * *
1257216 A-CAAAAATTGGTGGGAA-AAATGCCTTTCTTGTGAAACCAAAACATCAATATCATATATCCTAG
1 ATCAAAAATCGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAA
** * * * * * * * * *
1257279 TGAAAAGACTTTGTTTATGGTGCCTAATCTTGAAAACAATGGGGATTATGATGAGTATTC-ATGT
66 TGAAGGGAATGTGTTTTTAGTGCCTAATCTTGAAAAGAATGGAGATTATTATGAG-AATCGATGC
* *
1257343 TTGTCTTATTTAAGAGACAAACTTCAATTCT
130 TTGTCTTATTTAAGGGACGAACTT-AATT-T
* * *
1257374 ATCAAAAA-CGGTGGAAAGTAAAGCTTTTCTTGTGAAACCAAAGCATCAATGTCATGTATCCTAA
1 ATCAAAAATCGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAA
* * *
1257438 TGAAGGGATTGTGTTTTTAGTTCCTAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCT
66 TGAAGGGAATGTGTTTTTAGTGCCTAATCTTGAAAAGAATGGAGATTATTATGAGAATCGATGCT
*
1257503 TGTCTTATTTAAGGGATGAACTT
131 TGTCTTATTTAAGGGACGAACTT
1257526 TGATTTTAGT
Statistics
Matches: 347, Mismatches: 103, Indels: 37
0.71 0.21 0.08
Matches are distributed among these distances:
157 3 0.01
158 150 0.43
159 193 0.56
160 1 0.00
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (158 bp):
ATCAAAAATCGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAA
TGAAGGGAATGTGTTTTTAGTGCCTAATCTTGAAAAGAATGGAGATTATTATGAGAATCGATGCT
TGTCTTATTTAAGGGACGAACTTAATTT
Found at i:1257902 original size:26 final size:26
Alignment explanation
Indices: 1257866--1257918 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1257856 AAGAAAAGAT
1257866 TTCCATGCAAAAGAAAATCATCAATA
1 TTCCATGCAAAAGAAAATCATCAATA
1257892 TTCCATGCAAAAGAAAATCATCAATA
1 TTCCATGCAAAAGAAAATCATCAATA
1257918 T
1 T
1257919 GATTTATCCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.49, C:0.19, G:0.08, T:0.25
Consensus pattern (26 bp):
TTCCATGCAAAAGAAAATCATCAATA
Found at i:1258340 original size:159 final size:157
Alignment explanation
Indices: 1258041--1258804 Score: 380
Period size: 159 Copynumber: 4.8 Consensus size: 157
1258031 AATTGGTGGG
* * * * * **
1258041 AAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCA-TGTATCCTAATGAGAAGACTTA-GTT
1 AAAAAAGCTTTTCTTACGAAACCAAAGCATCAATATCACT-TATCCTAATGA-AGGAAATATGTT
* * * * * ** * * * *
1258104 TATGGTGCCTAATCTTGAAAAGAA-CGAGGATTAGAATA--ATTATTCATGTTTATCTTATTGAA
64 TTTGGTTCCTAATCTTGAAAAGAATGGA-GACTA-ATTACGAGAATCCATGCTTGTCTTATTTAA
* *
1258166 GAGACAAA-TAGTGATTCTATCAAAAACGATGGAA
127 GGGACAAACT-TTGATT-TA-CAAAAA-GATGGAA
* * *
1258200 AAAAAAGCTTTTCTTACGATACCAAAGCATCAATGTCACTTATCCTAATGAAGGAAATGTGTTTT
1 AAAAAAGCTTTTCTTACGAAACCAAAGCATCAATATCACTTATCCTAATGAAGGAAATATGTTTT
* * * *
1258265 TGGTTCCCAATCTGGAAAAGAATGGAGACT-GTTACGAGAATCGATGCTTGTCTTATTTAAGGGA
66 TGGTTCCTAATCTTGAAAAGAATGGAGACTAATTACGAGAATCCATGCTTGTCTTATTTAAGGGA
** * * *
1258329 TTAACTTTGATTTAGAGGAAAATAAGGCAA
131 CAAACTTTGATTTACA--AAAAGATGG-AA
* * * * * * ** * *
1258359 AGAAAAGATTTCCATGCCAAAGAAAATCATCAATATC-CTTTATCCTAAT-AAGGAGAATGTGTT
1 AAAAAAGCTTTTCTTACGAAACCAAAGCATCAATATCAC-TTATCCTAATGAAGGA-AATATGTT
* *** * * * * * * * *
1258422 TATTGCG--CCTTAT-AACAAAATGAACGAAGA-TCATTACTAGAATCCATGTTTGCCTCATTTG
64 T-TTG-GTTCCTAATCTTGAAAA-GAATGGAGACTAATTACGAGAATCCATGCTTGTCTTATTTA
* ** * *
1258483 AGGCACAAACTTACACTTTACTAAAA-TTGGATGA
126 AGGGACAAACTTTGA-TTTACAAAAAGATGGA--A
* * ** ****
1258517 AAAAATGCCTTTCTTGTGAAACCAAAGCATCAATATTGGGTATCCTAATG-A-GAAGACTATGTT
1 AAAAAAGCTTTTCTTACGAAACCAAAGCATCAATATCACTTATCCTAATGAAGGAA-A-TATGTT
* * * * * * ** * *
1258580 TATGGTGCGTAATCTTGAAAAGAATAGG-GA-TTAGTATGACTATCCATGTTTGTCTTATTTCAG
64 TTTGGTTCCTAATCTTGAAAAGAAT-GGAGACTAATTACGAGAATCCATGCTTGTCTTATTTAAG
* * *
1258643 AGACAAACTTTGATTCTATCAAAAACGGTTGAA
128 GGACAAACTTTGATT-TA-CAAAAA-GATGGAA
* * * *
1258676 AGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCA-TGTATCCTAATGAAGGGAATATGTTT
1 AAAAAAGCTTTTCTTACGAAACCAAAGCATCAATATCACT-TATCCTAATGAAGGAAATATGTTT
* *
1258740 TTGGCTCCTAATCTTGAAAAGAATGGAGACT-ATTACGAGAATCAATGCTTGTCTTATTTAAGGG
65 TTGGTTCCTAATCTTGAAAAGAATGGAGACTAATTACGAGAATCCATGCTTGTCTTATTTAAGGG
1258804 A
130 A
1258805 TGAACCTTGA
Statistics
Matches: 442, Mismatches: 128, Indels: 70
0.69 0.20 0.11
Matches are distributed among these distances:
156 3 0.01
157 12 0.03
158 112 0.25
159 295 0.67
160 14 0.03
161 6 0.01
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (157 bp):
AAAAAAGCTTTTCTTACGAAACCAAAGCATCAATATCACTTATCCTAATGAAGGAAATATGTTTT
TGGTTCCTAATCTTGAAAAGAATGGAGACTAATTACGAGAATCCATGCTTGTCTTATTTAAGGGA
CAAACTTTGATTTACAAAAAGATGGAA
Found at i:1258790 original size:476 final size:476
Alignment explanation
Indices: 1257892--1258964 Score: 1532
Period size: 476 Copynumber: 2.3 Consensus size: 476
1257882 ATCATCAATA
* * * *
1257892 TTCCATGCAAAAGAAAATCATCAATATGATTTATCCTAATGAGGAGAATGTGTTTATAGTGTCTA
1 TTCCATGCCAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTT
* * * ** *
1257957 ATCACAAAATGAGTGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGA
66 ATAACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTACA
* *
1258022 CTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCATGTATCCT
131 CTTTACAAAAATTGGTGGAAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCAGGTATCCT
* * *
1258087 AATGAGAAGACTTAGTTTATGGTGCCTAATCTTGAAAAGAACGAGGATTAGAATAATTATTCATG
196 AATGAGAAGACTTAGTTTATGGTGCCTAATCTTGAAAAGAAAGAGGATTAGAATAACTATCCATG
1258152 TTTATCTTATTGAAGAGACAAATAGTGATTCTATCAAAAACGATGGAAAAAAAAGCTTTTCTTAC
261 TTTATCTTATTGAAGAGACAAATAGTGATTCTATCAAAAACGATGGAAAAAAAAGCTTTTCTTAC
* * *
1258217 GATACCAAAGCATCAATGTCACTTATCCTAATGAAGGAAATGTGTTTTTGGTTCCCAATCTGGAA
326 GACACCAAAGCATCAATGTCACTTATCCTAATGAAGGAAATATGTTTTTGGCTCCCAATCTGGAA
* * * *
1258282 AAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTT-AGAG
391 AAGAATGGAGACTATTACGAGAATCAATGCTTGTCTTATTTAAGGGATGAACCTTGATTTCA-AG
*
1258346 GAAAATAAGGCAAAGAAAAGAT
455 GAAAACAAGGCAAAGAAAAGAT
* * * *
1258368 TTCCATGCCAAAGAAAATCATCAATATCCTTTATCCTAATAAGGAGAATGTGTTTATTGCGCCTT
1 TTCCATGCCAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTT
* *
1258433 ATAACAAAATGAACGAAGATCATTACTAGAATCCATGTTTGCCTCATTTGAGGCACAAACTTACA
66 ATAACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTACA
* * * **
1258498 CTTTACTAAAATTGGAT-GAAAAAATGCCTTTCTTGTGAAACCAAAGCATCAATATTGGGTATCC
131 CTTTACAAAAATTGG-TGGAAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCAGGTATCC
* * *
1258562 TAATGAGAAGAC-TATGTTTATGGTGCGTAATCTTGAAAAGAATAG-GGATTAGTATGACTATCC
195 TAATGAGAAGACTTA-GTTTATGGTGCCTAATCTTGAAAAGAA-AGAGGATTAGAATAACTATCC
* ** * * * *
1258625 ATGTTTGTCTTATTTCAGAGACAAACT-TTGATTCTATCAAAAACGGTTGAAAGAAAAGCTTTTC
258 ATGTTTATCTTATTGAAGAGACAAA-TAGTGATTCTATCAAAAACGATGGAAAAAAAAGCTTTTC
* *
1258689 TTACGACACCAAAGCATCAATGTCA-TGTATCCTAATGAAGGGAATATGTTTTTGGCTCCTAATC
322 TTACGACACCAAAGCATCAATGTCACT-TATCCTAATGAAGGAAATATGTTTTTGGCTCCCAATC
*
1258753 TTGAAAAGAATGGAGACTATTACGAGAATCAATGCTTGTCTTATTTAAGGGATGAACCTTGATTT
386 TGGAAAAGAATGGAGACTATTACGAGAATCAATGCTTGTCTTATTTAAGGGATGAACCTTGATTT
*
1258818 CAAGGAAAACAGGGCAAAGAAAAGAT
451 CAAGGAAAACAAGGCAAAGAAAAGAT
* * * *
1258844 TTTCAAG-CAAAGAAAAATCATCAATATCATTTATCCTAATGAGGAGAGTGTGTTTATAGTTCC-
1 TTCCATGCCAAAG-AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
* *
1258907 TATTGACAAAATGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCAC
65 TA-TAACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAC
1258965 TGTTAGGATC
Statistics
Matches: 529, Mismatches: 60, Indels: 16
0.87 0.10 0.03
Matches are distributed among these distances:
475 10 0.02
476 515 0.97
477 4 0.01
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.31
Consensus pattern (476 bp):
TTCCATGCCAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTT
ATAACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTACA
CTTTACAAAAATTGGTGGAAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCAGGTATCCT
AATGAGAAGACTTAGTTTATGGTGCCTAATCTTGAAAAGAAAGAGGATTAGAATAACTATCCATG
TTTATCTTATTGAAGAGACAAATAGTGATTCTATCAAAAACGATGGAAAAAAAAGCTTTTCTTAC
GACACCAAAGCATCAATGTCACTTATCCTAATGAAGGAAATATGTTTTTGGCTCCCAATCTGGAA
AAGAATGGAGACTATTACGAGAATCAATGCTTGTCTTATTTAAGGGATGAACCTTGATTTCAAGG
AAAACAAGGCAAAGAAAAGAT
Found at i:1258815 original size:159 final size:158
Alignment explanation
Indices: 1258177--1258817 Score: 399
Period size: 159 Copynumber: 4.0 Consensus size: 158
1258167 AGACAAATAG
* * * * *
1258177 TGATTCTATCAAAAACGATGGAAAAAAAAGCTTTTCTTACGATACCAAAGCATCAATGTCACT-T
1 TGATT-TATCAAAAACGGTTGAAAGAAAAGCTTTTCTTACGAAACCAAAGCATCAATATCA-TGT
* * * * * *
1258241 ATCCTAATGAAGGAAATGTGTTTTTGGTTCCCAATCTGGAAAAGAATGGAGACTGTTACGAGAAT
64 ATCCTAATGAAGGGAATATGTTTTTGGCTCCTAATCTTGAAAAGAATGGAGACTATTACGAGAAT
* * *
1258306 CGATGCTTGTCTTATTTAAGGGATTAACTT
129 CCATGCTTGTCTTATTTAAGGGATAAACCT
** * * * * * * * ** * * *
1258336 TGATTTAGAGGAAAATAAGG--CAAAGAAAAGATTTCCATGCCAAAGAAAATCATCAATATCCTT
1 TGATTT--ATCAAAA-ACGGTTGAAAGAAAAGCTTTTCTTACGAAACCAAAGCATCAATATCATG
* * * *** * * *
1258399 TATCCTAAT-AAGGAGAATGTGTTTATT-GCGCCTTAT-AACAAAATGAACGAAGA-TCATTACT
63 TATCCTAATGAAGG-GAATATGTTT-TTGGCTCCTAATCTTGAAAA-GAATGGAGACT-ATTACG
* * * * * *
1258460 AGAATCCATGTTTGCCTCATTTGAGGCACAAA-CT
124 AGAATCCATGCTTGTCTTATTTAAGGGATAAACCT
* ** * * * ** ***
1258494 TACACTTTA-CTAAAATTGGATGAAA-AAATGCCTTTCTTGTGAAACCAAAGCATCAATATTGGG
1 T-GA-TTTATC-AAAAACGGTTGAAAGAAAAGCTTTTCTTACGAAACCAAAGCATCAATATCATG
* * * * * * *
1258557 TATCCTAATG-AGAAGACTATGTTTATGG-TGCGTAATCTTGAAAAGAATAGG-GATTAGTATGA
63 TATCCTAATGAAG-GGAATATGTTTTTGGCT-CCTAATCTTGAAAAGAAT-GGAGACTATTACGA
** * * * * *
1258619 CTATCCATGTTTGTCTTATTTCAGAGACAAACTT
125 GAATCCATGCTTGTCTTATTTAAGGGATAAACCT
* *
1258653 TGATTCTATCAAAAACGGTTGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTA
1 TGATT-TATCAAAAACGGTTGAAAGAAAAGCTTTTCTTACGAAACCAAAGCATCAATATCATGTA
1258718 TCCTAATGAAGGGAATATGTTTTTGGCTCCTAATCTTGAAAAGAATGGAGACTATTACGAGAATC
65 TCCTAATGAAGGGAATATGTTTTTGGCTCCTAATCTTGAAAAGAATGGAGACTATTACGAGAATC
* *
1258783 AATGCTTGTCTTATTTAAGGGATGAACCT
130 CATGCTTGTCTTATTTAAGGGATAAACCT
1258812 TGATTT
1 TGATTT
1258818 CAAGGAAAAC
Statistics
Matches: 346, Mismatches: 109, Indels: 55
0.68 0.21 0.11
Matches are distributed among these distances:
157 5 0.01
158 116 0.34
159 210 0.61
160 13 0.04
161 2 0.01
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (158 bp):
TGATTTATCAAAAACGGTTGAAAGAAAAGCTTTTCTTACGAAACCAAAGCATCAATATCATGTAT
CCTAATGAAGGGAATATGTTTTTGGCTCCTAATCTTGAAAAGAATGGAGACTATTACGAGAATCC
ATGCTTGTCTTATTTAAGGGATAAACCT
Found at i:1260991 original size:3 final size:3
Alignment explanation
Indices: 1260983--1261017 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
1260973 AACCATCAAA
1260983 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
1261018 AGTTGACTCG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.34, T:0.31
Consensus pattern (3 bp):
GAT
Found at i:1264165 original size:32 final size:32
Alignment explanation
Indices: 1264108--1264204 Score: 131
Period size: 33 Copynumber: 3.0 Consensus size: 32
1264098 TTACAAGCAA
1264108 TGTATCGATACATTTCATTATGTATCGATACAT
1 TGTATCGATACATTT-ATTATGTATCGATACAT
* *
1264141 TGTATTGATACATTTATTATGTATCGATTCAT
1 TGTATCGATACATTTATTATGTATCGATACAT
* **
1264173 TGTATCGATACAATGTCCTATGTATCGATACA
1 TGTATCGATAC-ATTTATTATGTATCGATACA
1264205 AACAGTGGTA
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
32 26 0.46
33 30 0.54
ACGTcount: A:0.30, C:0.14, G:0.13, T:0.42
Consensus pattern (32 bp):
TGTATCGATACATTTATTATGTATCGATACAT
Found at i:1264278 original size:19 final size:20
Alignment explanation
Indices: 1264236--1264286 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
1264226 GCCAGTTTCT
* *
1264236 TGTATCGATACAATTATCCA
1 TGTATCGATACAATGATACA
1264256 TGTATCGATACAATGA-ACA
1 TGTATCGATACAATGATACA
1264275 TGTATCGATACA
1 TGTATCGATACA
1264287 TCTGGGTGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 14 0.48
20 15 0.52
ACGTcount: A:0.37, C:0.18, G:0.14, T:0.31
Consensus pattern (20 bp):
TGTATCGATACAATGATACA
Found at i:1264845 original size:28 final size:28
Alignment explanation
Indices: 1264814--1264876 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
1264804 AAGTTTTCAT
1264814 TTTTCTCCCCCTTAATCAGTTAACAAGA
1 TTTTCTCCCCCTTAATCAGTTAACAAGA
* * *
1264842 TTTTCTCTCCCTTAATCGGTTAACGAGA
1 TTTTCTCCCCCTTAATCAGTTAACAAGA
1264870 TTTTCTC
1 TTTTCTC
1264877 ATCCTAGATA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.22, C:0.27, G:0.10, T:0.41
Consensus pattern (28 bp):
TTTTCTCCCCCTTAATCAGTTAACAAGA
Found at i:1264917 original size:22 final size:22
Alignment explanation
Indices: 1264892--1264933 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
1264882 AGATAAACAT
*
1264892 ATTTCTCCCCTTTTATCAAAGC
1 ATTTCTCCCCCTTTATCAAAGC
*
1264914 ATTTCTCCCCCTTTGTCAAA
1 ATTTCTCCCCCTTTATCAAA
1264934 TCTTAAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.21, C:0.33, G:0.05, T:0.40
Consensus pattern (22 bp):
ATTTCTCCCCCTTTATCAAAGC
Found at i:1270111 original size:18 final size:19
Alignment explanation
Indices: 1270069--1270117 Score: 50
Period size: 18 Copynumber: 2.7 Consensus size: 19
1270059 TCCATCTTCT
1270069 TCTCTCCTC-CTCCTGTCA
1 TCTCTCCTCTCTCCTGTCA
*
1270087 TCCCTCCTCTCTCCAT-T-A
1 TCTCTCCTCTCTCC-TGTCA
*
1270105 TCTCTCCTATCTC
1 TCTCTCCTCTCTC
1270118 TCCTCCTATC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 20 0.77
19 5 0.19
20 1 0.04
ACGTcount: A:0.08, C:0.49, G:0.02, T:0.41
Consensus pattern (19 bp):
TCTCTCCTCTCTCCTGTCA
Found at i:1270184 original size:42 final size:42
Alignment explanation
Indices: 1270075--1270193 Score: 166
Period size: 42 Copynumber: 2.8 Consensus size: 42
1270065 TTCTTCTCTC
* * *
1270075 CTCCTCCTGTCATCCCTCCTCTCTCCATTATCTCTCCTATCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTATCT
* * *
1270117 CTCCTCCTATCATCCCTTCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTATCT
* *
1270159 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
1270194 TTGAGGGCTA
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 67 1.00
ACGTcount: A:0.09, C:0.46, G:0.02, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTATCT
Found at i:1274599 original size:29 final size:29
Alignment explanation
Indices: 1274557--1274645 Score: 178
Period size: 29 Copynumber: 3.1 Consensus size: 29
1274547 GATATAACAA
1274557 TGAGCTAATCATAGACCTATAGAGTTTAG
1 TGAGCTAATCATAGACCTATAGAGTTTAG
1274586 TGAGCTAATCATAGACCTATAGAGTTTAG
1 TGAGCTAATCATAGACCTATAGAGTTTAG
1274615 TGAGCTAATCATAGACCTATAGAGTTTAG
1 TGAGCTAATCATAGACCTATAGAGTTTAG
1274644 TG
1 TG
1274646 TCGATAAAGT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 60 1.00
ACGTcount: A:0.34, C:0.13, G:0.21, T:0.31
Consensus pattern (29 bp):
TGAGCTAATCATAGACCTATAGAGTTTAG
Found at i:1277511 original size:20 final size:21
Alignment explanation
Indices: 1277486--1277528 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
1277476 GAATCATGCA
1277486 AATTCATGT-TTTTC-TTAGCT
1 AATTCAT-TATTTTCATTAGCT
1277506 AATTCATTATTTTCATTAGCT
1 AATTCATTATTTTCATTAGCT
1277527 AA
1 AA
1277529 CTTTTTAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 1 0.05
20 12 0.57
21 8 0.38
ACGTcount: A:0.28, C:0.14, G:0.07, T:0.51
Consensus pattern (21 bp):
AATTCATTATTTTCATTAGCT
Found at i:1279386 original size:473 final size:476
Alignment explanation
Indices: 1278454--1285529 Score: 8574
Period size: 473 Copynumber: 15.0 Consensus size: 476
1278444 TGCCCTATTT
** * * * * *
1278454 CCTTAAATAAGATGACCATCGATTCTCGTAACTGTCGCCATTCTTTTCAAGATTGAGATGCCAAA
1 CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAA
*
1278519 ACACATTCCCCAT-ATTAGGATACATGAC----A---TTTGGTGTCACAAGAAAAGCTTTTCTTT
66 ACACATT-CCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTT
* *
1278576 CCACCGTTTTTGATAGAATCAAAGTTTATTTCTAAAATAAGACAAACATGAATACTCATACTAAT
130 CCACCGTTTTTGATAGAATCAAAGTTTGTTTCTTAAATAAGACAAACATGAATACTCATACTAAT
* * * *
1278641 CCCCCATTCTTTTTAGGATTAGACACCAAAAACATAGTTTTCTCATTAGGATACATCATATTGAT
195 -CCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGAT
**
1278706 ACTTTGGCCTTCGCAAGAAAGGCTTTTTTTTTACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCA
259 ACTTTGG-CTTCGCAAGAAAGGCTTTTTTTCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCA
* * * **
1278771 AATGAGACAAACATGGATTCCTGTTATGATCTTCATTCATTTTGTGATTAGGCAC-AAAAATGCA
323 AATGAGACAAACATGGATTCTTGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA
* * * *
1278835 TTCTCTTCATTAGGATAAATGATATTGTTGATTTTCTTTTGCCTCGAAATCTTTTCTTTGCCCTA
388 TTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA
1278900 TTTTCCTTAAAATCAAAGTTCATC
453 TTTTCCTTAAAATCAAAGTTCATC
* * * *
1278924 CCTTAAAAAAGATAAGCATCGATTCTCGTAACAGTGTCCATTCTATTCAAGATTGGGAAGCCAAA
1 CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAA
* * * *
1278989 ACACATTCCCTTTAGTAGGATACATGACATTGATGCTTTGGTGTCACAA-AAAAACCTTTCTTTC
66 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTC
* * * *
1279053 AACCGTTTTTGATAGAATCAATGTTTGTTTCTTAAGTAAGACAAACATGGATACTCATACTAATC
131 CACCGTTTTTGATAGAATCAAAGTTTGTTTCTTAAATAAGACAAACATGAATACTCATACTAATC
** * * *
1279118 AAC-TT-TTTTCAGGATTAGACACCAAAAACATAGTCTTCTCACTAGGATACATCATATTGATAC
196 CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATAC
* * * *
1279181 TTTGGCTTTGCAAGAATGGCTTTTTTTCGACCAATTTTAGTAAAGTCTAAGTTCGTGCCTCAAAT
261 TTTGGCTTCGCAAGAAAGGCTTTTTTTCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* *
1279246 GAGACAAAAATGGATTCTTGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTT
326 GAGACAAACATGGATTCTTGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* * *** * * *
1279311 TTCTCGTTAGGATAAATGATGCCGATGATTTTCTTTTGCATGGGAATATTTTCTTTTCCCTATTT
391 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
* *
1279376 TTCGTAAAATCAAAGTTCATC
456 TCCTTAAAATCAAAGTTCATC
* * * *
1279397 CCTTAAATAACATAAGCATCGATTCTCGTAAAAGTCTCCATTCTTTTCAAGATTGGGAACCCAAA
1 CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAA
*
1279462 ACACATTCCCTTCATTTGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTC
66 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTC
** * *
1279527 CATTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC-TGAATGCTCATACTAATC
131 CACCGTTTTTGATAGAATCAAAGTTTGTTTCTTAAATAAGACAAACATGAATACTCATACTAATC
* * * * *
1279591 CTCATTCCTTTCGGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATACTGATGC
196 CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATAC
* * * * * * *
1279656 TTTGGTTTCGCAACAAA-GCTTTTTTCCCACCAATTTTTTTGAAGTCTTAGTTCGTG-TTACAAA
261 TTTGGCTTCGCAAGAAAGGCTTTTTTTCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCT-CAAA
* * * *
1279719 TTAAACAAACATGGATTCTTGTAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACGCATT
325 TGAGACAAACATGGATTCTTGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
* * * * *
1279784 CTCCTCATTAGGATAAATGATACTGAAGACTTTCTTTTGCATGGAAATCTTTTCTTGGCCATA-T
390 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATT
1279848 TTCCTT-AAAT--AAG------
455 TTCCTTAAAATCAAAGTTCATC
* * **
1279861 ------AT--GAC---CATCGATTCTCGTAACTGTCGCCATTCTTTTCAAGATTGGGATTCCAAA
1 CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAA
* * *
1279915 ACACATTCCCCTT-ATTAGGATACATGACATTGACGCTTTAGTGTCGCAAGAAAAGCTTTTCTTT
66 ACACATT-CCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTT
* ** * *
1279979 CCACCGTTTTTGATAGAATCAAAGTTTATTTCAAAAAGAAGGCAAACATGAATACT-ATACTAAT
130 CCACCGTTTTTGATAGAATCAAAGTTTGTTTCTTAAATAAGACAAACATGAATACTCATACTAAT
** * * * *
1280043 CCCCATTCTTTAAAGAATTAGACACCAAAAACATAGTCTTCTCGTTAGGATACATCATATTGATA
195 CCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATA
* * *
1280108 CTTTGGCTTCGCAAGAAAGGCTTTTTTT-GACCAATTTTTGTAAAGTCTAAGTTTGTGTCTCAAA
260 CTTTGGCTTCGCAAGAAAGGCTTTTTTTCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA
* *
1280172 TGAGACAAACATGGATTCTTGTTATGATCTTCATTCATTTTGTGATTAGGCAC-AAAAACACATT
325 TGAGACAAACATGGATTCTTGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
* * * ** * *
1280236 CTCTTCATTAGGATAAATGATATTGTTGATTTTCTTTTGCCTCAAAATCTTTTCTCTGCCTTATT
390 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATT
*
1280301 TTCATTAAAATCAAAGTTCATC
455 TTCCTTAAAATCAAAGTTCATC
* * * * *
1280323 CCTTAAAAAAGACAAGCATCGATTTTCATAACAGTGTCCATTCTTTTCAAGATTGGGAAGCTAAA
1 CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAA
* * * *
1280388 ACACATTTCCTTCAGTAGGATACATGACATTGATGCTTTGGTGTCACAAAAAAAGCTTTTCCTTC
66 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTC
* * *
1280453 CACCGTTTTTGACAGAATCAAGGTTTGTTTCTTAAGTAAGACAAACATGAATACTCATACTAAT-
131 CACCGTTTTTGATAGAATCAAAGTTTGTTTCTTAAATAAGACAAACATGAATACTCATACTAATC
* * *
1280517 CCCACTCTTTTCAGGATTAGACACCATAAACATAGTCCTCTCATTAGGATACATCATATTGATAC
196 CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATAC
* **
1280582 TTTGGCTTCGCAAGAAAGGCTTTTTTT-GACCAATTTTTGTAAAGTCTAAGTTCGTTTCTCAAAT
261 TTTGGCTTCGCAAGAAAGGCTTTTTTTCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* *
1280646 GAGACAAACATGGATTCTTGTTATGATCTTCATTCATTTTGTGATTAGGCAC-AAAAACACATTC
326 GAGACAAACATGGATTCTTGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* * * * * *
1280710 TCTTCATTAGGATAAATGATATTGCTGATTTTCTTTTGCCTCGAAATCTTTTCTCTGCCTTATTT
391 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
*
1280775 TCATTAAAATCAAAGTTCATC
456 TCCTTAAAATCAAAGTTCATC
* * * * *
1280796 CCTTAAAAAAGACAAGCATCGATTTTCATAACAGTGTCCATTCTTTTCAAGATTGGGAAGCTAAA
1 CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAA
* * * * *
1280861 ACACATTTCCTTCAGTAGGATACATGACATTGATGCTTTGGTGTCGCAAAAAAAGCTTTTCCTTC
66 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTC
* * *
1280926 CACCGTTTTTGACAGAATCAAGGTTTGTTTCTTAAGTAAGACAAACATGAATACTCATACTAAT-
131 CACCGTTTTTGATAGAATCAAAGTTTGTTTCTTAAATAAGACAAACATGAATACTCATACTAATC
* * *
1280990 CCCACTCTTTTCAGGATTAGACACCATAAACATAGTCCTCTCATTAGGATACATCATATTGATAC
196 CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATAC
* ** * * *
1281055 TTTGGCTTCGCAAGAATGGCTTTTTTTTTACCAAATTTAGTGAAGTCTAAGTTCGTGCCTCAAAT
261 TTTGGCTTCGCAAGAAAGGCTTTTTTTCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* *
1281120 GAGACAAACATGGATTCTTGTAATGATCTTCATTCATTTTGTGATTAGGCGCAATAAACACATTC
326 GAGACAAACATGGATTCTTGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* * *
1281185 TCCTCAATAGGATAAATGATATTGATGGTTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTT
391 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
* *
1281250 TCCTTAAAATCAAAATTCTTC
456 TCCTTAAAATCAAAGTTCATC
* * * * *
1281271 CCATAAAAAAGACAAGCATCGATTCTCATAACAGTCTCCAATCTTTTCTAGATTGGGAAGCCAAA
1 CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCC-AA
* * * ** **
1281336 AACATATTCCCTTCATTAGGATACACGACCTTGACACTTTGGTGTTGCAAGAAAAGCTTTTCTTT
65 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTT
*
1281401 CCACCGTTTTTGATAGAATCAAAGTTTGTTTCATAAATAAGACAAACATGAATACTCATACTAAT
130 CCACCGTTTTTGATAGAATCAAAGTTTGTTTCTTAAATAAGACAAACATGAATACTCATACTAAT
* * *
1281466 CTCCATTCTTTTCAGGATTAGACACCATAAACATAGTCTTCTCATTAGGATACGTCATATTGATA
195 CCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATA
* * *
1281531 CTTTGGCTTCGCAAG-AAGGCTTTTCTTCTACCGATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA
260 CTTTGGCTTCGCAAGAAAGGCTTTTTTTCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA
* * * *
1281595 TGTGACAGACATGGATTCTTGTTATGATCTTCATTCATTTTGTGATTAAGCACTATAAACA-ATT
325 TGAGACAAACATGGATTCTTGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA-T
* *
1281659 TCTCCTCATTAAGATAAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTAT
389 TCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTAT
* *
1281724 TTTCCTAAAAATCAAAGCTCATC
454 TTTCCTTAAAATCAAAGTTCATC
* * * * * * *
1281747 GCTTAAATAAGACAAGGATCGATTCCCGTAACAGTTTCCATTCTTTTAAAGATTAGGAACCCAAA
1 CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAA
* ** **
1281812 ATACATTCTTTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTGCC
66 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTC
* * * *
1281877 CTCCGTTTTTTATAGAATCAAAGTTTGTTTCTTAAA-AAAACAAATATGAATACTCATACTAATC
131 CACCGTTTTTGATAGAATCAAAGTTTGTTTCTTAAATAAGACAAACATGAATACTCATACTAATC
* * * * * *
1281941 CCCATTCTTTTTAGGATTAGGCACTATAAACATAATTTTCTCCTTAGGATACATAATATTGATAC
196 CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATAC
* * * * *
1282006 TTTGGTTTCGCGAGAAAGGCTTTTTTCCCTCCAATTTTTGTAAAGTCTACG-TCTGTGCCTCAAA
261 TTTGGCTTCGCAAGAAAGGCTTTTTTTCCACCAATTTTTGTAAAGTCTAAGTTC-GTGCCTC--A
** * * * * *
1282070 AATGAGATGAACATGAATTCTAGTAATGATCTTCATTCATTTTGTGGTTAGGCACTACAAATACA
323 AATGAGACAAACATGGATTCTTGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA
* * * ** * *
1282135 TTCTCCTCATTAGGATAAATTATATTGTTAATTTTCTTAAGCATGGATATATTTTCTTTGCCCTA
388 TTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA
1282200 TTTTCCTTAAAATCAAAGTTCATC
453 TTTTCCTTAAAATCAAAGTTCATC
* * * * **
1282224 CCTTAAATAAGACACA-CATTGATTCTTGTAATAGTCTCCATTCTATTCAAGATT-GGATCCCAA
1 CCTTAAATAAGACA-AGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAA
** * *
1282287 AACACATTCTTTTCATTAGGATACATGACATTGATGTTTTGGTGTCACAAGAAAGGCTTTTCTTT
65 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTT
* * * *
1282352 TCACCGTTTTT-AGTAAAATCAAAGTTTTTTTCTTAAATAAGACAAGCATGAATACTCATACTAA
130 CCACCGTTTTTGA-TAGAATCAAAGTTTGTTTCTTAAATAAGACAAACATGAATACTCATACTAA
* * * * **
1282416 TCGCCGTTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGAAATGTCATATTGAT
194 TCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGAT
* * * ** *
1282481 ACTTTGGCTTCGCAAGAATGGC-ATTTTTCGAACCAATTACTGTAAAGTCTAAGTTCATGCCTCA
259 ACTTTGGCTTCGCAAGAAAGGCTTTTTTTC-CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCA
* *
1282545 AATGAGATAAACATGGATTCTTGTAGTGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA
323 AATGAGACAAACATGGATTCTTGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA
** * * *
1282610 TTCTCCTTGTTAGGATAAATGATGTTGATGATTTTCTTTTGCATTGTAATCTTTTCTTTGCCCTA
388 TTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA
*
1282675 TTTTCCTTAAAATCAAACTTCATC
453 TTTTCCTTAAAATCAAAGTTCATC
* * * *
1282699 CCTTAAATAAGGCAAACATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGGAGCC--A
1 CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAA
* * *
1282762 A-A-ATTCCCTTCATTAGGATACATGACAATGATGCTTTGGTGTCGCAAGAAAAGCGTTTCTTTC
66 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTC
* ** * * *
1282825 CTCTATTTTTGATAGAATCAAAGTTTGTTTCTTAAATAAAACAAACATAAATATTCATACTAATC
131 CACCGTTTTTGATAGAATCAAAGTTTGTTTCTTAAATAAGACAAACATGAATACTCATACTAATC
** ** * * *
1282890 TTCATTCTTTTCAGGATTAGGCACCATAAGTATAATCTTCTTC-TTATGATACACCATATTGATA
196 CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC-TCATTAGGATACATCATATTGATA
* * * * *
1282954 CTTTGGCTTCGCATGAAAGGCTTTTTTCCCTCCAATTTTTGTAAAGTCTATGTTCATGCCTCAAA
260 CTTTGGCTTCGCAAGAAAGGCTTTTTTTCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA
* * * *
1283019 TGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCATTATAAATACATT
325 TGAGACAAACATGGATTCTTGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
* * * * *
1283084 ATCCTTATTAGGATAAATGATATTGTTGATTTTCTTTTGCACGAAAATCTTTTCTTTGCCCTATT
390 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATT
*
1283149 TTCCTTAAAATCAAGGTTCATC
455 TTCCTTAAAATCAAAGTTCATC
* * * * * * **
1283171 CTTTAAATAAGACACGCATCAATTCTCGAAATAGTCTTCAGTTCTTTTCAAGATTGGGATCCCAA
1 CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCA-TTCTTTTCAAGATTGGGAAGCCAA
** * *
1283236 AACACATTCTTTTAATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT
65 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTT
* * * * * * * *
1283301 CTACCATTTTTTATAGAATTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATATTCAAACTAAT
130 CCACCGTTTTTGATAGAATCAAAGTTTGTTTCTTAAATAAGACAAACATGAATACTCATACTAAT
* * *
1283366 CCCCATTC--TTCATAGACTTAGGCACCATAAACATAGTCTTCTCATTAGGATAAATCGTATTGA
195 CCCCATTCTTTTCA-GGA-TTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGA
* * * * * * * * * *
1283429 T-GTTTGGTTTCGAAAGAAAGGC-TTTTTACCTCAAATTTTAGAAAACTCTAAGTCCGTGCCTCA
258 TACTTTGGCTTCGCAAGAAAGGCTTTTTTTCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCA
* *
1283492 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGTTTAGGCTCACTATAAACA
323 AATGAGACAAACATGGATTCTTGTAATGATCTTCATTCATTTTGTGATTAGG--CACTATAAACA
* *
1283557 CATTCTCCTCAATAGGATAAATGATATTTATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
386 CATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
* *
1283622 TATTTTCCATAAAATCATAGTTCATC
451 TATTTTCCTTAAAATCAAAGTTCATC
* * * *
1283648 CATTAAATAAGATAAGCATCGATTCTTC-AAAAAGTCTCCATTCTTTTCAAGATTGGGAAGCCAA
1 CCTTAAATAAGACAAGCATCGATTC-TCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAA
* * * *** * ** ** *
1283712 ATCACATTCCCTTCATCAAGATACATGACATTGGCACTTCGGTGTTGCAAGGGAAGTTTTTCTTT
65 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTT
* * * * * *
1283777 CCACCATTTTTTG-TAGAATCAAAGTTTGTCTCTTAAATAACACAAACATAAATACACATACTAT
130 CCACC-GTTTTTGATAGAATCAAAGTTTGTTTCTTAAATAAGACAAACATGAATACTCATACTAA
* * * * * * * *
1283841 TACCCATT-TTTCTTAGGATTAGGAACCATCAACATAGTTTTCTCAATAGGATATATCATATTAA
194 TCCCCATTCTTT-TCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGA
* * * *
1283905 TGCTTTGGCTTCGCAAGAAAGGC-TTTTTTCCACCAATTTTTGTAAATTCTAAGTTCATCCCTCA
258 TACTTTGGCTTCGCAAGAAAGGCTTTTTTTCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCA
* * * * * *
1283969 AATGAGACAAACATTGATTCTAGTAATGATCTTCATCCATTCTATGATTGGGCACTATAAACACA
323 AATGAGACAAACATGGATTCTTGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA
* * * * *
1284034 TTCTCCTCGTTAGGATAAATGGTTTTGATGATTTTCTTTTGCATGGAACTCTTTTCTTTGCCTTA
388 TTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA
* *
1284099 TTTTCTTTAAAATCAAAGCTCATC
453 TTTTCCTTAAAATCAAAGTTCATC
* * * * * *
1284123 CCTTAAATAAGGCAAGCATCAATTCTCGTAACAGTATCCATTATTTTCAAGATTAGGAACCCAAA
1 CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAA
** * ** *
1284188 ACACATTCTTTTCATTAGGATACATGACAATGATGCTTTGGTGTCTTAAGAAAAGCGTTTCTTTC
66 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTC
* * * * *
1284253 CTCTGTTTTTGATAGAATCAAAGTTTGTTTCTTAAATAAAACAAACATAAATATTCATACTAATC
131 CACCGTTTTTGATAGAATCAAAGTTTGTTTCTTAAATAAGACAAACATGAATACTCATACTAATC
** * * * *
1284318 TTCATTCTTTTCAGGATTAGGCACCATAAACATAATCTTCTCCTTATGATACACCATATTGATAC
196 CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATAC
** * * * *
1284383 TTTGGCTTCGCGTGAAAGGCTTTTTTCCCTCCAATTTTTGTAAAGTCTAAGTTCATTCCTCAAAT
261 TTTGGCTTCGCAAGAAAGGCTTTTTTTCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * * *
1284448 AAGACAAATATGGATTCTAGTAATGATCTTCATTCGTTTTGTGATT-GGACACTATAAACACATT
326 GAGACAAACATGGATTCTTGTAATGATCTTCATTCATTTTGTGATTAGG-CACTATAAACACATT
* * * ** * *
1284512 CTCCTCATTGGGATAAATGATAATGATGATTTTCTTTAGCACAGAAATCTTTTCTTTGGCTTATT
390 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATT
*
1284577 TTCCTTAAAATCGAAGTTCATC
455 TTCCTTAAAATCAAAGTTCATC
* **
1284599 GCTT--A-AAGACAAGCATCGATTCTCACAACAGTCTCCATTCTTTTCAAGATTGGGAA-CCAAA
1 CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCC-AA
* * * *
1284660 AACACATTCCCTTCATTAGGATGCGTGACATTGATGCTTTGGTGTCACAAGAAAACCTTTACTTT
65 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTT
* * *
1284725 CGACCG-TTTTGATAG--TCAAAG-TT-TATCATATAAATATGACAAACATGAATACTCATAAC-
130 CCACCGTTTTTGATAGAATCAAAGTTTGTTTC-T-TAAATAAGACAAACATGAATACTCAT-ACT
* * * ** *
1284784 AATCCCCATTCTTTTCAAGATTAGGCACCATAAACAAAGTCTTTTCCCTAGGATACATGATATTG
192 AATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTG
*** * * * * * * * *
1284849 ACGTTTTGG-TTACACAAGAAAGGCGTTTTTCCCACTAATTTTTGTAATGTATAAGTTTGTACCT
257 ATACTTTGGCTT-CGCAAGAAAGGCTTTTTTTCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCT
** * * * *
1284913 CAAATGAGACAAACATGGATTCTACTAATGATCTTCACTCATTCTATAATTAGGCACTATAAACA
321 CAAATGAGACAAACATGGATTCTTGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
* * *
1284978 CATTCTTCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTCTCTTTGCCC
386 CATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
*
1285043 TATTTTCTTTAAAATCAAAGTTCATC
451 TATTTTCCTTAAAATCAAAGTTCATC
* * * * * * * * *
1285069 ACTTAAATAAGATAAGCTTCGATTTTCATGACAATTTCCACTCTTTTCAAGATTGGGAA-CCAAA
1 CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCC-AA
* *
1285133 AACACATTCCCTTCATTAGGATACGTGACATTGATGCTTTGGTGTCACAAGAAAAGCATTTCTTT
65 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTT
* * * * * ** * *
1285198 CCACCG-TTTTGGTAGAATTAAAATTTGTCTCTTCAATAAGACAAGTAAGAATACTCATATTAAT
130 CCACCGTTTTTGATAGAATCAAAGTTTGTTTCTTAAATAAGACAAACATGAATACTCATACTAAT
* * * * *
1285262 CACCACTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATA-AGCGATATTGTT
195 CCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATC-ATATTGAT
** * * * * *
1285326 GTTTTGGTTTTGCAAGAAAGGC-TTTTTTCTCACCAATTTTTGAAAAGTTTAAGTTCGTGTCTCA
259 ACTTTGGCTTCGCAAGAAAGGCTTTTTTTC-CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCA
* ** * * * ** * **
1285390 AATGAGACAAACATAGATTCTACTAATGATCTACACTCATTTTATGATTAAACACTGTGCACACA
323 AATGAGACAAACATGGATTCTTGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA
** * * *
1285455 TTCTTGTAATTAGGATAATTGATATTGAGGATATTT-TTTTGCATGGAAATCTTTTCTTTGCCCT
388 TTCTCCTCATTAGGATAAATGATATTGATGAT-TTTCTTTTGCATGGAAATCTTTTCTTTGCCCT
1285519 ATTTTCCTTAA
452 ATTTTCCTTAA
1285530 CATGACAAGC
Statistics
Matches: 5707, Mismatches: 800, Indels: 193
0.85 0.12 0.03
Matches are distributed among these distances:
452 61 0.01
453 298 0.05
454 25 0.00
456 4 0.00
458 2 0.00
468 4 0.00
469 9 0.00
470 349 0.06
471 4 0.00
472 499 0.09
473 1215 0.21
474 411 0.07
475 1159 0.20
476 897 0.16
477 762 0.13
478 8 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (476 bp):
CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAA
ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTC
CACCGTTTTTGATAGAATCAAAGTTTGTTTCTTAAATAAGACAAACATGAATACTCATACTAATC
CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATAC
TTTGGCTTCGCAAGAAAGGCTTTTTTTCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
GAGACAAACATGGATTCTTGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
TCCTTAAAATCAAAGTTCATC
Done.