Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Sequence: Scaffold274 Parameters: 2 7 7 80 10 50 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 1642345 ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32 Warning! 31972 characters in sequence are not A, C, G, or T File 9 of 10 Found at i:1280241 original size:158 final size:160 Alignment explanation
Indices: 1280079--1284526 Score: 703 Period size: 159 Copynumber: 28.1 Consensus size: 160 1280069 AAAAACATAG * * 1280079 TCTTCTCGTTAGGATACATCATATTGATACTTTGGCTTCGCAAGAAAGGCTTTT-TTTGACCAAT 1 TCTTCTCATTAGGATACATCATATTGATACTTTGGCTTCGCAAGAAAAGCTTTTCTTTGACCAAT * * * * ** * 1280143 TTTTGTAAAGTCTAAGTTTGTGTCTCAAATGAGACAAACATGGATTCTTGTTATGATCTTCATTC 66 TTTTGTAAAATCTAAGTTCGTTTCTCAAATAAGACAAACATGGATTCTTCATATGATCTCCATTC 1280208 ATTTT-GTGATTAGGCA-CAAAAACACATTC 131 -TTTTCGTGATTAGGCACCAAAAACACATTC * * * * * *** * * 1280237 TC-T-TCATTAGGATAAATGATATTGTTGA-TTT-TCTTTTGCCTCAAAATCTTTTCTCTG-CCT 1 TCTTCTCATTAGGATACATCATATTGAT-ACTTTGGC-TTCGCAAGAAAAGCTTTTCTTTGACC- * * * ** * * * * ** * 1280297 TATTTTCAT-TAAAATCAAAGTTCATCCCTTAAAAAAGACAAGCATCGATT-TTCATAACAGTGT 63 AATTTT--TGTAAAATCTAAGTTCGTTTCTCAAATAAGACAAACATGGATTCTTCATATGA-TCT ** * * * * 1280360 CCATTCTTTTCAAGATTGGGAAGCTAAAACACATT- 125 CCATTCTTTTCGTGATTAGGCACCAAAAACACATTC * * * * * * * ** 1280395 TCCT-TCAGTAGGATACATGACATTGATGCTTTGG-TGTCACAAAAAAAGCTTTTCCTTCCACC- 1 TCTTCTCATTAGGATACATCATATTGATACTTTGGCT-TCGCAAGAAAAGCTTTT-CTTTGACCA * * * * * * * 1280457 GTTTTTG-ACAGAATC-AAGGTTTGTTTCTTAAGTAAGACAAACATGAATAC-TCATACTAATC- 64 ATTTTTGTA-A-AATCTAA-GTTCGTTTCTCAAATAAGACAAACATGGATTCTTCATA-TGATCT * * * * * 1280518 CCACTCTTTTCAG-GATTAGACACCATAAACATAGTC 125 CCATTCTTTTC-GTGATTAGGCACCAAAAACACATTC * 1280554 -C-TCTCATTAGGATACATCATATTGATACTTTGGCTTCGCAAGAAAGGCTTTT-TTTGACCAAT 1 TCTTCTCATTAGGATACATCATATTGATACTTTGGCTTCGCAAGAAAAGCTTTTCTTTGACCAAT * * ** * 1280616 TTTTGTAAAGTCTAAGTTCGTTTCTCAAATGAGACAAACATGGATTCTTGTTATGATCTTCATTC 66 TTTTGTAAAATCTAAGTTCGTTTCTCAAATAAGACAAACATGGATTCTTCATATGATCTCCATTC 1280681 ATTTT-GTGATTAGGCA-CAAAAACACATTC 131 -TTTTCGTGATTAGGCACCAAAAACACATTC * * * * * ** * * 1280710 TC-T-TCATTAGGATAAATGATATTGCTGA-TTT-TCTTTTGCCTCG-AAATCTTTTCTCTG-CC 1 TCTTCTCATTAGGATACATCATATTGAT-ACTTTGGC-TTCG-CAAGAAAAGCTTTTCTTTGACC * * * ** * * * * ** * 1280769 TTATTTTCAT-TAAAATCAAAGTTCATCCCTTAAAAAAGACAAGCATCGATT-TTCATAACAGTG 63 -AATTTT--TGTAAAATCTAAGTTCGTTTCTCAAATAAGACAAACATGGATTCTTCATATGA-TC ** * * * * 1280832 TCCATTCTTTTCAAGATTGGGAAGCTAAAACACATT- 124 TCCATTCTTTTCGTGATTAGGCACCAAAAACACATTC * * * * * * ** 1280868 TCCT-TCAGTAGGATACATGACATTGATGCTTTGG-TGTCGCAAAAAAAGCTTTTCCTTCCACC- 1 TCTTCTCATTAGGATACATCATATTGATACTTTGGCT-TCGCAAGAAAAGCTTTT-CTTTGACCA * * * * * * * 1280930 GTTTTTG-ACAGAATC-AAGGTTTGTTTCTTAAGTAAGACAAACATGAATAC-TCATACTAATC- 64 ATTTTTGTA-A-AATCTAA-GTTCGTTTCTCAAATAAGACAAACATGGATTCTTCATA-TGATCT * * * * * 1280991 CCACTCTTTTCAG-GATTAGACACCATAAACATAGTC 125 CCATTCTTTTC-GTGATTAGGCACCAAAAACACATTC ** * * * 1281027 -C-TCTCATTAGGATACATCATATTGATACTTTGGCTTCGCAAGAATGGCTTTTTTTTTACCAAA 1 TCTTCTCATTAGGATACATCATATTGATACTTTGGCTTCGCAAGAAAAGCTTTTCTTTGACCAAT * * * ** * * * 1281090 TTTAGTGAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTT-GTAATGATCTTCATT 66 TTTTGTAAAATCTAAGTTCGTTTCTCAAATAAGACAAACATGGATTCTTCAT-ATGATCTCCATT * 1281154 CATTTT-GTGATTAGGC-GCAATAAACACATTC 130 C-TTTTCGTGATTAGGCACCAA-AAACACATTC * * * ** * * * * * * 1281185 TC--CTCAATAGGATAAATGATATTGATGGTTT-TCTTTTGCATTG-AAATCTTTTCTTTGCCCT 1 TCTTCTCATTAGGATACATCATATTGATACTTTGGC-TTCGCA-AGAAAAGCTTTTCTTTGACCA * * * * * * ** 1281246 ATTTTCCT-TAAAATCAAAATTC--TTCCCATAAAAAAGACAAGCATCGATTC-TCATAACAGTC 64 ATTTT--TGTAAAATCTAAGTTCGTTTCTC--AAATAAGACAAACATGGATTCTTCATATGA-TC * * * * 1281307 TCCAATCTTTTC-TAGATTGGGAAGCCAAAAACATATTC 124 TCCATTCTTTTCGT-GATTAGGCA-CCAAAAACACATTC * ** * * * 1281345 -CCT-TCATTAGGATACA-CGACCTTGACACTTTGG-TGTTGCAAGAAAAGCTTTTCTTTCCACC 1 TCTTCTCATTAGGATACATC-ATATTGATACTTTGGCT-TCGCAAGAAAAGCTTTTCTTT-GACC * * * * * * * 1281406 -GTTTTTGATAGAATCAAAGTTTGTTTCAT-AAATAAGACAAACATGAATAC-TCATACTAATCT 63 AATTTTTG-TAAAATCTAAGTTCGTTTC-TCAAATAAGACAAACATGGATTCTTCATA-TGATCT * * ** 1281468 CCATTCTTTTCAG-GATTAGACACC-ATAA-ACATAG 125 CCATTCTTTTC-GTGATTAGGCACCAAAAACACATTC * * * 1281502 TCTTCTCATTAGGATACGTCATATTGATACTTTGGCTTCGCAAG-AAGGCTTTTCTTCT-ACCGA 1 TCTTCTCATTAGGATACATCATATTGATACTTTGGCTTCGCAAGAAAAGCTTTTCTT-TGACCAA * ** ** * ** * 1281565 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAGACATGGATTCTTGTTATGATCTTCATT 65 TTTTTGTAAAATCTAAGTTCGTTTCTCAAATAAGACAAACATGGATTCTTCATATGATCTCCATT * * * 1281630 CATTTT-GTGATTAAGCACTATAAACA-ATT- 130 C-TTTTCGTGATTAGGCACCAAAAACACATTC * * * * * * * * * 1281659 TCTCCTCATTAAGATAAATGATATTGATGA-TTT-TCTTTTGCATTG-AAATCTTTTCTTTGCCC 1 TCTTCTCATTAGGATACATCATATTGAT-ACTTTGGC-TTCGCA-AGAAAAGCTTTTCTTTGACC * ** * * * ** * ** * * * ** * 1281721 TATTTTCCTAAAAATCAAAGCTCATCGCTTAAATAAGACAAGGATCGATTC-CCGTAACAGTTTC 63 AATTTTTGT-AAAATCTAAGTTCGTTTCTCAAATAAGACAAACATGGATTCTTCATATGA-TCTC *** * * * 1281785 CATTCTTTTAAAGATTAGGAACCCAAAATACATTC 126 CATTCTTTTCGTGATTAGGCACCAAAAACACATTC * * * * **** * 1281820 T-TT-TCATTAGGATACATGACATTGATGCTTTGG-TGTCACAAGAAAAGCTTTTCTGCCCTCCG 1 TCTTCTCATTAGGATACATCATATTGATACTTTGGCT-TCGCAAGAAAAGCTTTTCT-TTGACCA * * * * * * * * * * * * 1281882 TTTTTTATAGAATCAAAGTTTGTTTCTTAAA-AAAACAAATATGAATAC-TCATACTAATCCCCA 64 ATTTTTGTAAAATCTAAGTTCGTTTCTCAAATAAGACAAACATGGATTCTTCATA-TGATCTCCA * * * * * 1281945 TTCTTTTTAG-GATTAGGCACTATAAACATAAT- 128 TTC-TTTTCGTGATTAGGCACCAAAAACACATTC * * * * * *** 1281977 T-TTCTCCTTAGGATACATAATATTGATACTTTGGTTTCGCGAGAAAGGCTTTT-TTCCCTCCAA 1 TCTTCTCATTAGGATACATCATATTGATACTTTGGCTTCGCAAGAAAAGCTTTTCTT-TGACCAA * * ** * * 1282040 TTTTTGTAAAGTCTACG-TCTGTGCCTCAAA-AATGAGATGAACATGAATTC-T-AGTAATGATC 65 TTTTTGTAAAATCTAAGTTC-GTTTCTCAAATAA-GACA--AACATGGATTCTTCA-T-ATGATC * * * * * 1282101 TTCATTCATTTT-GTGGTTAGGCACTACAAATACATTC 124 TCCATTC-TTTTCGTGATTAGGCACCAAAAACACATTC * * * * * * * * * ** * * 1282138 TC--CTCATTAGGATAAATTATATTGTTAATTT-TCTTAAGCATGGATATATTTTCTTTGCCCTA 1 TCTTCTCATTAGGATACATCATATTGATACTTTGGCTT-CGCAAGAAAAGCTTTTCTTTGACCAA * * ** * * * * 1282200 TTTTCCT-TAAAATCAAAGTTCATCCCTTAAATAAGACACACATTGATTCTT-GTAAT-AGTCTC 65 TTTT--TGTAAAATCTAAGTTCGTTTCTCAAATAAGACAAACATGGATTCTTCAT-ATGA-TCTC * ** * 1282262 CATTCTATTCAAGATT-GG-ATCCCAAAACACATTC 126 CATTCTTTTCGTGATTAGGCA-CCAAAAACACATTC * * ** * * * 1282296 T-TT-TCATTAGGATACATGACATTGATGTTTTGG-TGTCACAAGAAAGGCTTTTCTTTTCACC- 1 TCTTCTCATTAGGATACATCATATTGATACTTTGGCT-TCGCAAGAAAAGCTTTTC-TTTGACCA * * ** * * * * * * 1282357 GTTTTTAGTAAAATCAAAGTTTTTTTCTTAAATAAGACAAGCATGAATAC-TCATACTAATCGCC 64 ATTTTT-GTAAAATCTAAGTTCGTTTCTCAAATAAGACAAACATGGATTCTTCATA-TGATCTCC * ** * ** 1282421 GTTCTTTTCAAGATTAGGCACC-ATAA-ACATAG 127 ATTCTTTTCGTGATTAGGCACCAAAAACACATTC * ** ** * * 1282453 TCTTCTCATTAGGAAATGTCATATTGATACTTTGGCTTCGCAAGAATGGCATTT-TTCGAACCAA 1 TCTTCTCATTAGGATACATCATATTGATACTTTGGCTTCGCAAGAAAAGCTTTTCTTTG-ACCAA ** * * ** * * * * 1282517 TTACTGTAAAGTCTAAGTTCATGCCTCAAATGAGATAAACATGGATTCTT-GTAGTGATCTTCAT 65 TTTTTGTAAAATCTAAGTTCGTTTCTCAAATAAGACAAACATGGATTCTTCATA-TGATCTCCAT * * 1282581 TCATTTT-GTGATTAGGCACTATAAACACATTC 129 TC-TTTTCGTGATTAGGCACCAAAAACACATTC ** * * * * * * * * * 1282613 TC--CTTGTTAGGATAAATGATGTTGATGA-TTT-TCTTTTGCATTG-TAATCTTTTCTTTGCCC 1 TCTTCTCATTAGGATACATCATATTGAT-ACTTTGGC-TTCGCA-AGAAAAGCTTTTCTTTGACC * * * * ** * * * * 1282673 TATTTTCCT-TAAAATCAAACTTCATCCCTTAAATAAGGCAAACATCGATTC-TCGTAAT-AGTC 63 AATTTT--TGTAAAATCTAAGTTCGTTTCTCAAATAAGACAAACATGGATTCTTCAT-ATGA-TC ** * * 1282735 TCCATTCTTTTCAAGATTGGGGAGCC---AA-A-ATTC 124 TCCATTCTTTTCGTGATTAGGCA-CCAAAAACACATTC * * * * * * * * 1282768 -CCT-TCATTAGGATACATGACAATGATGCTTTGG-TGTCGCAAGAAAAGCGTTTCTTT-CCTCT 1 TCTTCTCATTAGGATACATCATATTGATACTTTGGCT-TCGCAAGAAAAGCTTTTCTTTGAC-CA * * * * * * * * * * 1282829 ATTTTTGATAGAATCAAAGTTTGTTTCTTAAATAAAACAAACAT-AAATATTCATACTAATCTTC 64 ATTTTTG-TAAAATCTAAGTTCGTTTCTCAAATAAGACAAACATGGATTCTTCATA-TGATCTCC * ** ** 1282893 ATTCTTTTCAG-GATTAGGCACC-ATAA-GTATAA 127 ATTCTTTTC-GTGATTAGGCACCAAAAACACATTC * * * * *** 1282925 TCTTCTTC-TTATGATACACCATATTGATACTTTGGCTTCGCATGAAAGGCTTTT-TTCCCTCCA 1 TCTTC-TCATTAGGATACATCATATTGATACTTTGGCTTCGCAAGAAAAGCTTTTCTT-TGACCA * * * ** * * * 1282988 ATTTTTGTAAAGTCTATGTTCATGCCTCAAATGAGACAAACATGGATTC-T-AGTAAAGATCTTC 64 ATTTTTGTAAAATCTAAGTTCGTTTCTCAAATAAGACAAACATGGATTCTTCA-T-ATGATCTCC ** * * * 1283051 ATTCATTTT-GTGATTAGGCATTATAAATACATTA 127 ATTC-TTTTCGTGATTAGGCACCAAAAACACATTC * * * * * * * * * * 1283085 TC--CTTATTAGGATAAATGATATTGTTGA-TTT-TCTTTTGCACGAAAATCTTTTCTTTGCCCT 1 TCTTCTCATTAGGATACATCATATTGAT-ACTTTGGC-TTCGCAAGAAAAGCTTTTCTTTGACCA * ** ** * 1283146 ATTTTCCT-TAAAATC-AAGGTTCATCCTT-T-AAATAAGACACGCATCAATTC-TCGAAAT-AG 64 ATTTT--TGTAAAATCTAA-GTTCGT--TTCTCAAATAAGACAAACATGGATTCTTC-ATATGA- * ** * * 1283205 TCTTCAGTTCTTTTCAAGATT-GGGATCCCAAAACACATTC 122 TCTCCA-TTCTTTTCGTGATTAGGCA-CCAAAAACACATTC * * * * * 1283245 T-TT-TAATTAGGATACATGACATTGATGCTTTGG-TGTCGCAAGAAAAGCTTTTCTTTCTACCA 1 TCTTCTCATTAGGATACATCATATTGATACTTTGGCT-TCGCAAGAAAAGCTTTTCTTT-GACCA * * * * * * * * * * * * 1283307 TTTTTTATAGAAT-TAAAGTTTGTCTCTTAAATAAGACAAACA-AGAATATTCAAACTAATCCCC 64 ATTTTTGTAAAATCT-AAGTTCGTTTCTCAAATAAGACAAACATGGATTCTTCATA-TGATCTCC * * ** 1283370 ATTC--TTCATAGACTTAGGCACC-ATAA-ACATAG 127 ATTCTTTTCGT-GA-TTAGGCACCAAAAACACATTC * * * * * * **** * 1283402 TCTTCTCATTAGGATAAATCGTATTGAT-GTTTGGTTTCGAAAGAAAGGCTTTT-TACCTCAAAT 1 TCTTCTCATTAGGATACATCATATTGATACTTTGGCTTCGCAAGAAAAGCTTTTCTTTGACCAAT * * ** * * 1283465 TTTAG-AAAACTCTAAGTCCGTGCCTCAAATGAGACAAACATGGATTC-T-AGTAATGATCTTCA 66 TTTTGTAAAA-TCTAAGTTCGTTTCTCAAATAAGACAAACATGGATTCTTCA-T-ATGATCTCCA * * * 1283527 TTCATTTT-GTGTTTAGGCTCACTATAAACACATTC 128 TTC-TTTTCGTGATTAGG--CACCAAAAACACATTC * * * * * * * * * * * 1283562 TC--CTCAATAGGATAAATGATATTTATGA-TTT-TCTTTTGCATGGAAATCTTTTCTTTGCCCT 1 TCTTCTCATTAGGATACATCATATTGAT-ACTTTGGC-TTCGCAAGAAAAGCTTTTCTTTGACCA ** * * * * * * ** 1283623 ATTTTCCATAAAATC-ATAGTTC-ATCCATTAAATAAGATAAGCATCGATTCTTCA-AAAAGTCT 64 ATTTT-TGTAAAATCTA-AGTTCGTTTC-TCAAATAAGACAAACATGGATTCTTCATATGA-TCT ** * * * 1283685 CCATTCTTTTCAAGATTGGGAAGCC-AAATCACATTC 125 CCATTCTTTTCGTGATTAGGCA-CCAAAAACACATTC * * * ** * * ** * * 1283721 CCTTCATCA--A-GATACATGACATTGGCACTTCGG-TGTTGCAAGGGAAGTTTTTCTTTCCACC 1 TCTTC-TCATTAGGATACATCATATTGATACTTTGGCT-TCGCAAGAAAAGCTTTTCTTT-GACC * * * * * * * ** * * 1283782 ATTTTTTGTAGAATCAAAGTTTGTCTCTTAAATAACACAAACATAAATAC-ACATACT-AT-TAC 63 AATTTTTGTAAAATCTAAGTTCGTTTCTCAAATAAGACAAACATGGATTCTTCATA-TGATCT-- * * * ** * * 1283844 CCATTTTTCTTAG-GATTAGGAACCATCAACATAGT- 125 CCATTCTT-TTCGTGATTAGGCACCAAAAACACATTC * * * * * ** 1283879 T-TTCTCAATAGGATATATCATATTAATGCTTTGGCTTCGCAAGAAAGGCTTTT-TTCCACCAAT 1 TCTTCTCATTAGGATACATCATATTGATACTTTGGCTTCGCAAGAAAAGCTTTTCTTTGACCAAT * * ** * * * 1283942 TTTTGTAAATTCTAAGTTCATCCCTCAAATGAGACAAACATTGATTC-T-AGTAATGATCTTCA- 66 TTTTGTAAAATCTAAGTTCGTTTCTCAAATAAGACAAACATGGATTCTTCA-T-ATGATCTCCAT ** * * * * 1284004 TCCATTCTATGATTGGGCACTATAAACACATTC 129 TCTTTTC-GTGATTAGGCACCAAAAACACATTC * * ** * * * * * ** 1284037 TC--CTCGTTAGGATAAATGGTTTTGATGA-TTT-TCTTTTGCATGGAACTCTTTTCTTTG-CCT 1 TCTTCTCATTAGGATACATCATATTGAT-ACTTTGGC-TTCGCAAGAAAAGCTTTTCTTTGACC- * * * * * ** * * * ** * ** * 1284097 TATTTTCTTTAAAATCAAAGCTCATCCCTTAAATAAGGCAAGCATCAATTC-TCGTAACAGTATC 63 AATTTT-TGTAAAATCTAAGTTCGTTTCTCAAATAAGACAAACATGGATTCTTCATATGA-TCTC * ** * * 1284161 CATTATTTTCAAGATTAGGAACCCAAAACACATTC 126 CATTCTTTTCGTGATTAGGCACCAAAAACACATTC * * * * ** * * * 1284196 T-TT-TCATTAGGATACATGACAATGATGCTTTGG-TGTCTTAAGAAAAGCGTTTCTTT-CCTCT 1 TCTTCTCATTAGGATACATCATATTGATACTTTGGCT-TCGCAAGAAAAGCTTTTCTTTGAC-CA * * * * * * * * * * * 1284257 GTTTTTGATAGAATCAAAGTTTGTTTCTTAAATAAAACAAACAT-AAATATTCATACTAATCTTC 64 ATTTTTG-TAAAATCTAAGTTCGTTTCTCAAATAAGACAAACATGGATTCTTCATA-TGATCTCC * ** 1284321 ATTCTTTTCAG-GATTAGGCACC-ATAA-ACATAA 127 ATTCTTTTC-GTGATTAGGCACCAAAAACACATTC * * * ** * *** 1284353 TCTTCTCCTTATGATACACCATATTGATACTTTGGCTTCGCGTGAAAGGCTTTT-TTCCCTCCAA 1 TCTTCTCATTAGGATACATCATATTGATACTTTGGCTTCGCAAGAAAAGCTTTTCTT-TGACCAA * * * * * 1284417 TTTTTGTAAAGTCTAAGTTCATTCCTCAAATAAGACAAATATGGATTC-T-AGTAATGATCTTCA 65 TTTTTGTAAAATCTAAGTTCGTTTCTCAAATAAGACAAACATGGATTCTTCA-T-ATGATCTCCA * * 1284480 TTCGTTTT-GTGATT-GGACACTATAAACACATTC 128 TTC-TTTTCGTGATTAGG-CACCAAAAACACATTC * 1284513 TC--CTCATTGGGATA 1 TCTTCTCATTAGGATA 1284527 AATGATAATG Statistics Matches: 2987, Mismatches: 976, Indels: 654 0.65 0.21 0.14 Matches are distributed among these distances: 153 1 0.00 154 10 0.00 155 105 0.04 156 178 0.06 157 373 0.12 158 899 0.30 159 965 0.32 160 358 0.12 161 81 0.03 162 16 0.01 163 1 0.00 ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37 Consensus pattern (160 bp): TCTTCTCATTAGGATACATCATATTGATACTTTGGCTTCGCAAGAAAAGCTTTTCTTTGACCAAT TTTTGTAAAATCTAAGTTCGTTTCTCAAATAAGACAAACATGGATTCTTCATATGATCTCCATTC TTTTCGTGATTAGGCACCAAAAACACATTC Found at i:1282699 original size:475 final size:475 Alignment explanation
Indices: 1279850--1285529 Score: 6802 Period size: 475 Copynumber: 12.0 Consensus size: 475 1279840 GGCCATATTT ** * * * ** 1279850 CCTTAAATAAGATGACCATCGATTCTCGTAACTGTCGCCATTCTTTTCAAGATTGGGATTCCAAA 1 CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCCAAA * * 1279915 ACACATTCCCCTT-ATTAGGATACATGACATTGACGCTTTAGTGTCGCAAGAAAAGCTTTTCTTT 66 ACACATT-CCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT * ** * * 1279979 CCACCGTTTTTGATAGAATCAAAGTTTATTTCAAAAAGAAGGCAAACATGAATACT-ATACTAAT 130 CCACCGTTTTTG-TAGAATCAAAGTTTGTTTCTTAAATAAGACAAACATGAATACTCATACTAAT ** * * * * 1280043 CCCCATTCTTTAAAGAATTAGACACCAAAAACATAGTCTTCTCGTTAGGATACATCATATTGATA 194 CCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATA ** * * 1280108 CTTTGGCTTCGCAAGAAAGGCTTTTTT-TGACCAATTTTTGTAAAGTCTAAGTTTGTGTCTCAAA 259 CTTTGGCTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA * * * 1280172 TGAGACAAACATGGATTCTTGTTATGATCTTCATTCATTTTGTGATTAGGCAC-AAAAACACATT 324 TGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT * * * ** * * 1280236 CTCTTCATTAGGATAAATGATATTGTTGATTTTCTTTTGCCTCAAAATCTTTTCTCTGCCTTATT 389 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATT * 1280301 TTCATTAAAATCAAAGTTCATC 454 TTCCTTAAAATCAAAGTTCATC * * * * * * 1280323 CCTTAAAAAAGACAAGCATCGATTTTCATAACAGTGTCCATTCTTTTCAAGATTGGGAAGCTAAA 1 CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCCAAA * * * * * 1280388 ACACATTTCCTTCAGTAGGATACATGACATTGATGCTTTGGTGTCACAAAAAAAGCTTTTCCTTC 66 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC * * * 1280453 CACCGTTTTTGACAGAATCAAGGTTTGTTTCTTAAGTAAGACAAACATGAATACTCATACTAAT- 131 CACCGTTTTTG-TAGAATCAAAGTTTGTTTCTTAAATAAGACAAACATGAATACTCATACTAATC * * * 1280517 CCCACTCTTTTCAGGATTAGACACCATAAACATAGTCCTCTCATTAGGATACATCATATTGATAC 195 CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATAC ** ** 1280582 TTTGGCTTCGCAAGAAAGGCTTTTTT-TGACCAATTTTTGTAAAGTCTAAGTTCGTTTCTCAAAT 260 TTTGGCTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT * * * 1280646 GAGACAAACATGGATTCTTGTTATGATCTTCATTCATTTTGTGATTAGGCAC-AAAAACACATTC 325 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC * * * * * * 1280710 TCTTCATTAGGATAAATGATATTGCTGATTTTCTTTTGCCTCGAAATCTTTTCTCTGCCTTATTT 390 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTT * 1280775 TCATTAAAATCAAAGTTCATC 455 TCCTTAAAATCAAAGTTCATC * * * * * * 1280796 CCTTAAAAAAGACAAGCATCGATTTTCATAACAGTGTCCATTCTTTTCAAGATTGGGAAGCTAAA 1 CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCCAAA * * * * 1280861 ACACATTTCCTTCAGTAGGATACATGACATTGATGCTTTGGTGTCGCAAAAAAAGCTTTTCCTTC 66 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC * * * 1280926 CACCGTTTTTGACAGAATCAAGGTTTGTTTCTTAAGTAAGACAAACATGAATACTCATACTAAT- 131 CACCGTTTTTG-TAGAATCAAAGTTTGTTTCTTAAATAAGACAAACATGAATACTCATACTAATC * * * 1280990 CCCACTCTTTTCAGGATTAGACACCATAAACATAGTCCTCTCATTAGGATACATCATATTGATAC 195 CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATAC * *** * * * 1281055 TTTGGCTTCGCAAGAATGGCTTTTTTTTTACCAAATTTAGTGAAGTCTAAGTTCGTGCCTCAAAT 260 TTTGGCTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT * * * 1281120 GAGACAAACATGGATTCTTGTAATGATCTTCATTCATTTTGTGATTAGGCGCAATAAACACATTC 325 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC * * 1281185 TCCTCAATAGGATAAATGATATTGATGGTTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTT 390 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTT * * 1281250 TCCTTAAAATCAAAATTCTTC 455 TCCTTAAAATCAAAGTTCATC * * * * * * 1281271 CCATAAAAAAGACAAGCATCGATTCTCATAACAGTCTCCAATCTTTTCTAGATTGGGAAGCCAAA 1 CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAA-CCCAA * * * ** * 1281336 AACATATTCCCTTCATTAGGATACACGACCTTGACACTTTGGTGTTGCAAGAAAAGCTTTTCTTT 65 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT * 1281401 CCACCGTTTTTGATAGAATCAAAGTTTGTTTCATAAATAAGACAAACATGAATACTCATACTAAT 130 CCACCGTTTTTG-TAGAATCAAAGTTTGTTTCTTAAATAAGACAAACATGAATACTCATACTAAT * * * 1281466 CTCCATTCTTTTCAGGATTAGACACCATAAACATAGTCTTCTCATTAGGATACGTCATATTGATA 194 CCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATA * * 1281531 CTTTGGCTTCGCAAG-AAGGCTTTTCTT-CTACCGATTTTTGTAAAGTCTAAGTTCGTGCCTCAA 259 CTTTGGCTTCGCAAGAAAGGCTTTT-TTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAA * * * * * 1281594 ATGTGACAGACATGGATTCTTGTTATGATCTTCATTCATTTTGTGATTAAGCACTATAAACA-AT 323 ATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA- * 1281658 TTCTCCTCATTAAGATAAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTA 387 TTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTA * * 1281723 TTTTCCTAAAAATCAAAGCTCATC 452 TTTTCCTTAAAATCAAAGTTCATC * * * * * * 1281747 GCTTAAATAAGACAAGGATCGATTCCCGTAACAGTTTCCATTCTTTTAAAGATTAGGAACCCAAA 1 CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCCAAA * ** * ** 1281812 ATACATTCTTTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTGCC 66 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC * * * * 1281877 CTCCGTTTTTTATAGAATCAAAGTTTGTTTCTTAAA-AAAACAAATATGAATACTCATACTAATC 131 CACCG-TTTTTGTAGAATCAAAGTTTGTTTCTTAAATAAGACAAACATGAATACTCATACTAATC * * * * * * 1281941 CCCATTCTTTTTAGGATTAGGCACTATAAACATAATTTTCTCCTTAGGATACATAATATTGATAC 195 CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATAC * * * * 1282006 TTTGGTTTCGCGAGAAAGGCTTTTTTCCCTCCAATTTTTGTAAAGTCTACG-TCTGTGCCTCAAA 260 TTTGGCTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTC-GTGCCTC--A ** * * * * 1282070 AATGAGATGAACATGAATTCTAGTAATGATCTTCATTCATTTTGTGGTTAGGCACTACAAATACA 322 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA * * * ** * * * 1282135 TTCTCCTCATTAGGATAAATTATATTGTTAATTTTCTTAAGCATGGATATATTTTCTTTGCCCTA 387 TTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTA 1282200 TTTTCCTTAAAATCAAAGTTCATC 452 TTTTCCTTAAAATCAAAGTTCATC * * * * * 1282224 CCTTAAATAAGACACA-CATTGATTCTTGTAATAGTCTCCATTCTATTCAAGATT-GGATCCCAA 1 CCTTAAATAAGACA-AGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCCAA ** * * * 1282287 AACACATTCTTTTCATTAGGATACATGACATTGATGTTTTGGTGTCACAAGAAAGGCTTTTCTTT 65 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT * * * * 1282352 TCACCGTTTTTAGTAAAATCAAAGTTTTTTTCTTAAATAAGACAAGCATGAATACTCATACTAAT 130 CCACCGTTTTT-GTAGAATCAAAGTTTGTTTCTTAAATAAGACAAACATGAATACTCATACTAAT * * * * ** 1282417 CGCCGTTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGAAATGTCATATTGATA 194 CCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATA * * ** ** * 1282482 CTTTGGCTTCGCAAGAATGGCATTTTTCGAACCAATTACTGTAAAGTCTAAGTTCATGCCTCAAA 259 CTTTGGCTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA * * * 1282547 TGAGATAAACATGGATTCTTGTAGTGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT 324 TGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT ** * * 1282612 CTCCTTGTTAGGATAAATGATGTTGATGATTTTCTTTTGCATTGTAATCTTTTCTTTGCCCTATT 389 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATT * 1282677 TTCCTTAAAATCAAACTTCATC 454 TTCCTTAAAATCAAAGTTCATC * * * * * 1282699 CCTTAAATAAGGCAAACATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGGAGCC--A 1 CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCCAAA * * 1282762 A-A-ATTCCCTTCATTAGGATACATGACAATGATGCTTTGGTGTCGCAAGAAAAGCGTTTCTTTC 66 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC * ** * * * 1282825 CTCTATTTTTGATAGAATCAAAGTTTGTTTCTTAAATAAAACAAACATAAATATTCATACTAATC 131 CACCGTTTTTG-TAGAATCAAAGTTTGTTTCTTAAATAAGACAAACATGAATACTCATACTAATC ** ** * * * 1282890 TTCATTCTTTTCAGGATTAGGCACCATAAGTATAATCTTCTTC-TTATGATACACCATATTGATA 195 CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC-TCATTAGGATACATCATATTGATA * * * * 1282954 CTTTGGCTTCGCATGAAAGGCTTTTTTCCCTCCAATTTTTGTAAAGTCTATGTTCATGCCTCAAA 259 CTTTGGCTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA * * * 1283019 TGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCATTATAAATACATT 324 TGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT * * * * 1283084 ATCCTTATTAGGATAAATGATATTGTTGATTTTCTTTTGCA-CGAAAATCTTTTCTTTGCCCTAT 389 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATTG-AAATCTTTTCTTTGCCCTAT * 1283148 TTTCCTTAAAATCAAGGTTCATC 453 TTTCCTTAAAATCAAAGTTCATC * * * * * * * 1283171 CTTTAAATAAGACACGCATCAATTCTCGAAATAGTCTTCAGTTCTTTTCAAGATTGGGATCCCAA 1 CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCA-TTCTTTTCAAGATTGGGAACCCAA ** * 1283236 AACACATTCTTTTAATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT 65 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT * * * * * * * * 1283301 CTACCATTTTTTATAGAATTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATATTCAAACTAAT 130 CCACC-GTTTTTGTAGAATCAAAGTTTGTTTCTTAAATAAGACAAACATGAATACTCATACTAAT * * * 1283366 CCCCATTC--TTCATAGACTTAGGCACCATAAACATAGTCTTCTCATTAGGATAAATCGTATTGA 194 CCCCATTCTTTTCA-GGA-TTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGA * * * * * * * * 1283429 T-GTTTGGTTTCGAAAGAAAGGCTTTTTACCTCA--AATTTTAGAAAACTCTAAGTCCGTGCCTC 257 TACTTTGGCTTCGCAAGAAAGGCTTTTTTCC-CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTC * 1283491 AAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGTTTAGGCTCACTATAAAC 321 AAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGG--CACTATAAAC * * * 1283556 ACATTCTCCTCAATAGGATAAATGATATTTATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC 384 ACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCC * * 1283621 CTATTTTCCATAAAATCATAGTTCATC 449 CTATTTTCCTTAAAATCAAAGTTCATC * * * * * 1283648 CATTAAATAAGATAAGCATCGATTCTTC-AAAAAGTCTCCATTCTTTTCAAGATTGGGAAGCCAA 1 CCTTAAATAAGACAAGCATCGATTC-TCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCCAA * * * *** * * ** * 1283712 ATCACATTCCCTTCATCAAGATACATGACATTGGCACTTCGGTGTTGCAAGGGAAGTTTTTCTTT 65 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT * * * * * * 1283777 CCACCATTTTTTGTAGAATCAAAGTTTGTCTCTTAAATAACACAAACATAAATACACATACTATT 130 CCACC-GTTTTTGTAGAATCAAAGTTTGTTTCTTAAATAAGACAAACATGAATACTCATACTAAT * * * * * * * * 1283842 ACCCATT-TTTCTTAGGATTAGGAACCATCAACATAGTTTTCTCAATAGGATATATCATATTAAT 194 CCCCATTCTTT-TCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGAT * * * * 1283906 GCTTTGGCTTCGCAAGAAAGGCTTTTTT-CCACCAATTTTTGTAAATTCTAAGTTCATCCCTCAA 258 ACTTTGGCTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAA * * * * * 1283970 ATGAGACAAACATTGATTCTAGTAATGATCTTCATCCATTCTATGATTGGGCACTATAAACACAT 323 ATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT * * * * * * 1284035 TCTCCTCGTTAGGATAAATGGTTTTGATGATTTTCTTTTGCATGGAACTCTTTTCTTTGCCTTAT 388 TCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTAT * * 1284100 TTTCTTTAAAATCAAAGCTCATC 453 TTTCCTTAAAATCAAAGTTCATC * * * * * 1284123 CCTTAAATAAGGCAAGCATCAATTCTCGTAACAGTATCCATTATTTTCAAGATTAGGAACCCAAA 1 CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCCAAA ** * ** * 1284188 ACACATTCTTTTCATTAGGATACATGACAATGATGCTTTGGTGTCTTAAGAAAAGCGTTTCTTTC 66 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC * * * * * 1284253 CTCTGTTTTTGATAGAATCAAAGTTTGTTTCTTAAATAAAACAAACATAAATATTCATACTAATC 131 CACCGTTTTTG-TAGAATCAAAGTTTGTTTCTTAAATAAGACAAACATGAATACTCATACTAATC ** * * * * 1284318 TTCATTCTTTTCAGGATTAGGCACCATAAACATAATCTTCTCCTTATGATACACCATATTGATAC 195 CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATAC ** * * * 1284383 TTTGGCTTCGCGTGAAAGGCTTTTTTCCCTCCAATTTTTGTAAAGTCTAAGTTCATTCCTCAAAT 260 TTTGGCTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT * * * 1284448 AAGACAAATATGGATTCTAGTAATGATCTTCATTCGTTTTGTGATT-GGACACTATAAACACATT 325 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGG-CACTATAAACACATT * * * ** * * 1284512 CTCCTCATTGGGATAAATGATAATGATGATTTTCTTTAGCACAGAAATCTTTTCTTTGGCTTATT 389 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATT * 1284577 TTCCTTAAAATCGAAGTTCATC 454 TTCCTTAAAATCAAAGTTCATC * ** * 1284599 GCTT--A-AAGACAAGCATCGATTCTCACAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAA 1 CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCCAAA * * * * * 1284661 ACACATTCCCTTCATTAGGATGCGTGACATTGATGCTTTGGTGTCACAAGAAAACCTTTACTTTC 66 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC * * * 1284726 GACCG-TTTTGATAG--TCAAAG-TT-TATCATATAAATATGACAAACATGAATACTCATAAC-A 131 CACCGTTTTTG-TAGAATCAAAGTTTGTTTC-T-TAAATAAGACAAACATGAATACTCAT-ACTA * * * ** * 1284785 ATCCCCATTCTTTTCAAGATTAGGCACCATAAACAAAGTCTTTTCCCTAGGATACATGATATTGA 192 ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGA *** * * * * * * * 1284850 CGTTTTGG-TTACACAAGAAAGGCGTTTTTCCCACTAATTTTTGTAATGTATAAGTTTGTACCTC 257 TACTTTGGCTT-CGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTC * * * * * 1284914 AAATGAGACAAACATGGATTCTACTAATGATCTTCACTCATTCTATAATTAGGCACTATAAACAC 321 AAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC * * 1284979 ATTCTTCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCA-TGAAAATCTTCTCTTTGCCC 386 ATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATTG-AAATCTTTTCTTTGCCC * 1285043 TATTTTCTTTAAAATCAAAGTTCATC 450 TATTTTCCTTAAAATCAAAGTTCATC * * * * * * * * * * 1285069 ACTTAAATAAGATAAGCTTCGATTTTCATGACAATTTCCACTCTTTTCAAGATTGGGAACCAAAA 1 CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCCAAA * * * 1285134 ACACATTCCCTTCATTAGGATACGTGACATTGATGCTTTGGTGTCACAAGAAAAGCATTTCTTTC 66 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC * * * * * ** * * * 1285199 CACCGTTTTGGTAGAATTAAAATTTGTCTCTTCAATAAGACAAGTAAGAATACTCATATTAATCA 131 CACCGTTTTTGTAGAATCAAAGTTTGTTTCTTAAATAAGACAAACATGAATACTCATACTAATCC * * * * ** 1285264 CCACTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATA-AGCGATATTGTTGT 196 CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATC-ATATTGATAC * * * * * * 1285328 TTTGGTTTTGCAAGAAAGGCTTTTTTCTCACCAATTTTTGAAAAGTTTAAGTTCGTGTCTCAAAT 260 TTTGGCTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT * * * * * ** * ** 1285393 GAGACAAACATAGATTCTACTAATGATCTACACTCATTTTATGATTAAACACTGTGCACACATTC 325 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC ** * * * * 1285458 TTGTAATTAGGATAATTGATATTGAGGATATTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATT 390 TCCTCATTAGGATAAATGATATTGATGAT-TTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATT 1285522 TTCCTTAA 454 TTCCTTAA 1285530 CATGACAAGC Statistics Matches: 4509, Mismatches: 630, Indels: 134 0.86 0.12 0.03 Matches are distributed among these distances: 468 3 0.00 469 6 0.00 470 266 0.06 471 6 0.00 472 395 0.09 473 949 0.21 474 206 0.05 475 1093 0.24 476 829 0.18 477 742 0.16 478 14 0.00 ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37 Consensus pattern (475 bp): CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCCAAA ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC CACCGTTTTTGTAGAATCAAAGTTTGTTTCTTAAATAAGACAAACATGAATACTCATACTAATCC CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATACT TTGGCTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATG AGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTT CCTTAAAATCAAAGTTCATC Found at i:1285775 original size:269 final size:269 Alignment explanation
Indices: 1285291--1285798 Score: 617 Period size: 269 Copynumber: 1.9 Consensus size: 269 1285281 AGGCACCATA * * * * 1285291 AACATAGTCTTCTCATTAGGATAAGCGATATTGTTGTTTTGGTTTTGCAAGAAAGGCTTTTTTCT 1 AACATAGTCTTCTCATTAGGATAAGCGATATTGATGTTTTGGTTTCGCAAGAAAGGCATTTTTCC * * * ** 1285356 CACCAATTTTTGAAAAGTTTAAGTTCGTGTCTCAAATGAGACAAACATAGATTCTACTAATGATC 66 CACCAATTTTTGAAAAGTCTAAGTTCATGTCTCAAATAAGACAAACATAGAAACTACTAATGATC * ** * ** * * 1285421 TACACTCATTTTATGATTAAACACTGTGCACACATTCTTGTAATTAGGATAATTGATATTGAGGA 131 TACACTCATTTTATGATTAAACACTATAAACACAATCTCCTAATTAGGATAAATGATAATGAGGA * * * 1285486 TATTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAACATGACAAGCATCAATTCTCA 196 TATTTTTTTGCATAGAAATCTTTTCTTTACCATATTTTCCTTAACATGACAAGCATCAATTCTCA 1285551 AAATTAGGC 261 AAATTAGGC * * * * * 1285560 AACATAGTCTTCTCATTATGATACA-TGATATTGATGTTTTGGTTTCGTAGGAAGGGCATTTTTC 1 AACATAGTCTTCTCATTAGGATA-AGCGATATTGATGTTTTGGTTTCGCAAGAAAGGCATTTTTC * * * * 1285624 CCACCAATTTTTGTAAAGTCTAAGTTCAT-TCCTCAAATAAGACAGATAT-GCAAACTAGTAATG 65 CCACCAATTTTTGAAAAGTCTAAGTTCATGT-CTCAAATAAGACAAACATAG-AAACTACTAATG * * * * *** * 1285687 ATCTTCATTTATTTTGTGATTTGGCACTATAAACACAATCTCCTCATTAGGATAAATGATAATGA 128 ATCTACACTCATTTTATGATTAAACACTATAAACACAATCTCCTAATTAGGATAAATGATAATGA * * 1285752 TGATTTTTTTTTGCATAGAAATCTTTTCTTTACCATATTTTCCTTAA 193 GGATATTTTTTTGCATAGAAATCTTTTCTTTACCATATTTTCCTTAA 1285799 AATCGAAGTT Statistics Matches: 197, Mismatches: 39, Indels: 6 0.81 0.16 0.02 Matches are distributed among these distances: 268 2 0.01 269 194 0.98 270 1 0.01 ACGTcount: A:0.31, C:0.16, G:0.14, T:0.40 Consensus pattern (269 bp): AACATAGTCTTCTCATTAGGATAAGCGATATTGATGTTTTGGTTTCGCAAGAAAGGCATTTTTCC CACCAATTTTTGAAAAGTCTAAGTTCATGTCTCAAATAAGACAAACATAGAAACTACTAATGATC TACACTCATTTTATGATTAAACACTATAAACACAATCTCCTAATTAGGATAAATGATAATGAGGA TATTTTTTTGCATAGAAATCTTTTCTTTACCATATTTTCCTTAACATGACAAGCATCAATTCTCA AAATTAGGC Found at i:1286268 original size:744 final size:744 Alignment explanation
Indices: 1284835--1286273 Score: 1739 Period size: 744 Copynumber: 1.9 Consensus size: 744 1284825 TTTTCCCTAG * * * 1284835 GATACATGATATTGACGTTTTGGTTACACAAGAAAGGCGTTTTTCCCACTAATTTTTGTAATGTA 1 GATACATGATATTGACGTTTTGGTTACACAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTA ** * * ** 1284900 TAAGTTTGTACCTCAAATGAGACAAACATGGATTCTACTAATGATCTTCACTCATTCTATAATTA 66 TAAGTTCATACCTCAAATAAGACAAACATGCAAACTACTAATGATCTTCACTCATTCTATAATTA * * * 1284965 GGCACTATAAACACATTCTTCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAAT 131 GGCACTATAAACACAATCTCCTCATTAGGATAAATGATAATGATGATTTTCTTTTGCATGAAAAT * * * * ** 1285030 CTTCTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCACTTAAATAAGATAAGCTTCGATTTT 196 CTTCTCTTTACCATATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGATAAGCATCGATTCC * * ** * * 1285095 CATGACAATTTCCACTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACGTG 261 CATAACAATCTCCACTCTTTTCAAGATCAGGAACCAAAAACACATTCCCTTCATTAAGATACGTC * * * * 1285160 ACATTGATGCTTTGGTGTCACAAGAAAAGCATTTCTTTCCACCGTTTTGGTAGAATTAAAATTTG 326 ACATTGATGCTTTGGTGTCACAAGAAAAGCATTTCTGTCCACCGTTTTGATAGAATCAAAATATG * * * * 1285225 TCTCTTCAATAAGACAAGTAAGAATACTCATATTAATCACCACTCTTTTCAAGATTAGGCACCAT 391 TCTATTAAATAAGACAAATAAGAATACTCATACTAATCACCACTCTTTTCAAGATTAGGCACCAT * * * * 1285290 AAACATAGTCTTCTCATTAGGATAAGCGATATTGTTGTTTTGGTTTTGCAAGAAAGGCTTTTTTC 456 AAACATAGTCTTCTCATTAGGATAAGCGATAATGATGTTTTGGTTTCGCAAGAAAGGCATTTTTC * * * * * 1285355 TCACCAATTTTTGAAAAGTTTAAGTTCGTGTCTCAAATGAGACAAACATAGATTCTACTAATGAT 521 CCACCAATTTTTGAAAAGTCTAAGTTCATGTCTCAAATAAGACAAACATAGATTCTACTAAAGAT * ** * * * * 1285420 CTACACTCATTTTATGATTAAACACTGTGCACACATTCTTGTAATTAGGATAATTGATATTGAGG 586 CTACACTCATTTTATGATTAAACACTATAAACACATTCTTCTAATTAGGAGAAATGATAATGAGG * *** 1285485 ATATTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAACATGACAAGCATCAATTCTC 651 ATATTTTTTAGCACAAAAATCTTTTCTTTGCCCTATTTTCCTTAACATGACAAGCATCAATTCTC 1285550 AAAATTAGGCAACATAGTCTTCTCATTAT 716 AAAATTAGGCAACATAGTCTTCTCATTAT * * ** * * * 1285579 GATACATGATATTGATGTTTTGGTTTCGTAGGAAGGGCATTTTTCCCACCAATTTTTGTAAAGTC 1 GATACATGATATTGACGTTTTGGTTACACAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTA * * * * * * * * * * 1285644 TAAGTTCATTCCTCAAATAAGACAGATATGCAAACTAGTAATGATCTTCATTTATTTTGTGATTT 66 TAAGTTCATACCTCAAATAAGACAAACATGCAAACTACTAATGATCTTCACTCATTCTATAATTA * 1285709 GGCACTATAAACACAATCTCCTCATTAGGATAAATGATAATGATGATTTTTTTTTGCAT-AGAAA 131 GGCACTATAAACACAATCTCCTCATTAGGATAAATGATAATGATGATTTTCTTTTGCATGA-AAA * * * * 1285773 TCTTTTCTTTACCATATTTTCCTTAAAATCGAAGTTCATCGCTTAAATAGGACT-AGCATCGATT 195 TCTTCTCTTTACCATATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGA-TAAGCATCGATT * * * * 1285837 CCCGTAACAGTCTCCATTCTTTTCAAGATCAGGAACCAAAAACACATTCCCTGT-ATTAAGATGC 259 CCCATAACAATCTCCACTCTTTTCAAGATCAGGAACCAAAAACACATTCCCT-TCATTAAGATAC * * * * * * * 1285901 GTCACATTGATGCTTTGGTGTCATAGGCAAAGCTTTTCTGTCGACCGTTTTTGATCGAATCAAAG 323 GTCACATTGATGCTTTGGTGTCACAAGAAAAGCATTTCTGTCCACCG-TTTTGATAGAATCAAAA * * * 1285966 TATGTCTATTAAATAAGACAAATATGAATACTCATACTAATCTCCA-T-TTTTCCCAGAATTAGG 387 TATGTCTATTAAATAAGACAAATAAGAATACTCATACTAATCACCACTCTTTT-CAAG-ATTAGG * * 1286029 CACCATAAACATAGTCTTCTCATTATGATACA-CGATAATGATGTTTTGGTTTCGTAAGAATA-G 450 CACCATAAACATAGTCTTCTCATTAGGATA-AGCGATAATGATGTTTTGGTTTCGCAAGAA-AGG *** * * * 1286092 CATTTTTCCCACCAATTTTTTTCAAGTCTAAGTTCAT-TCCTTAAATAAGACAGATAT-GTATTC 513 CATTTTTCCCACCAATTTTTGAAAAGTCTAAGTTCATGT-CTCAAATAAGACAAACATAG-ATTC * * * * *** * 1286155 TAGTAAAGATCTTCATTCATTTTGTGATTGGGCACTATAAACACATT-TTCCTCATTAGGAGAAA 576 TACTAAAGATCTACACTCATTTTATGATTAAACACTATAAACACATTCTT-CTAATTAGGAGAAA * * * 1286219 TGATAATGATGAT-TTTTTTAGCACAAAAATCTTTTCTTTTCCTTATTTTCCTTAA 640 TGATAATGAGGATATTTTTTAGCACAAAAATCTTTTCTTTGCCCTATTTTCCTTAA 1286274 AATCGAAATT Statistics Matches: 577, Mismatches: 107, Indels: 22 0.82 0.15 0.03 Matches are distributed among these distances: 743 5 0.01 744 351 0.61 745 219 0.38 746 2 0.00 ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37 Consensus pattern (744 bp): GATACATGATATTGACGTTTTGGTTACACAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTA TAAGTTCATACCTCAAATAAGACAAACATGCAAACTACTAATGATCTTCACTCATTCTATAATTA GGCACTATAAACACAATCTCCTCATTAGGATAAATGATAATGATGATTTTCTTTTGCATGAAAAT CTTCTCTTTACCATATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGATAAGCATCGATTCC CATAACAATCTCCACTCTTTTCAAGATCAGGAACCAAAAACACATTCCCTTCATTAAGATACGTC ACATTGATGCTTTGGTGTCACAAGAAAAGCATTTCTGTCCACCGTTTTGATAGAATCAAAATATG TCTATTAAATAAGACAAATAAGAATACTCATACTAATCACCACTCTTTTCAAGATTAGGCACCAT AAACATAGTCTTCTCATTAGGATAAGCGATAATGATGTTTTGGTTTCGCAAGAAAGGCATTTTTC CCACCAATTTTTGAAAAGTCTAAGTTCATGTCTCAAATAAGACAAACATAGATTCTACTAAAGAT CTACACTCATTTTATGATTAAACACTATAAACACATTCTTCTAATTAGGAGAAATGATAATGAGG ATATTTTTTAGCACAAAAATCTTTTCTTTGCCCTATTTTCCTTAACATGACAAGCATCAATTCTC AAAATTAGGCAACATAGTCTTCTCATTAT Found at i:1286725 original size:475 final size:471 Alignment explanation
Indices: 1285560--1287223 Score: 1901 Period size: 475 Copynumber: 3.5 Consensus size: 471 1285550 AAAATTAGGC * * * * * 1285560 AACATAGTCTTCTCATTATGATACATGATATTGATGTTTTGGTTTCGTAGGAAGGGCATTTTTCC 1 AACATAGTCTTCTCATTAGGATACACGATATTGATGTTTTGGTTTCGCAAGAAAGGCATTTTTCC * * * ** * 1285625 CACCAATTTTTGTAAAGTCTAAGTTCATTCCTCAAATAAGACAGATATGCAAACTAGTAATGATC 66 CACCAATTTTTGTAAAGTCTAAGTTCATTCCTCAAATAAGACAAACATGGATTCTACTAATGATC * * * * * * 1285690 TTCATTTATTTTGTGATTTGGCACTATAAACACAATCTCCTCATTAGGATAAATGATAATGATGA 131 TTCACTCATTTTATGATTAGGCACTATAAACACATTCTTCTCATTAGGATAAATGATAATGATGA * * * 1285755 TTTTTTTTTGCAT-AGAAATCTTTTCTTTACCATATTTTCCTTAAAATCGAAGTTCATCGCTTAA 196 -TTTTTTTTGCATGA-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCGAAATTCATCGCTTAA * * ** 1285819 ATAGGACTAGCATCGATTC-CCGTAACAGTCTCCATTCTTTTCAAGATCAGGAACCAAAAACACA 259 ATAGGACAAGCATCGATTCTTC--AACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACA * * * * * * * 1285883 TTCCCTGT-ATTAAGATGCGTCACATTGATGCTTTGGTGTCATAGGCAAAGCTTTTCTGTCGACC 322 TTCCCT-TCATTAGGATGCGTGACATTGATGCTTTGGTGTCACAAG-AAAACCTTTCTTTCGACC * * * 1285947 GTTTTTGATCGAATCAAAGTATGTCTATTAAATAAGACAAATATGAATACTCAT-ACTAATCTCC 385 G-TTTTGATAGAATCAAAGTTTGTCTA-TAAATAAGACAAATATGAATACTCATAAC-AATCACC * * 1286011 ATT-TTTCCCAGAATTAGGCACCATA 447 ATTCTTTTCAAG-ATTAGGCACCATA * * * 1286036 AACATAGTCTTCTCATTATGATACACGATAATGATGTTTTGGTTTCGTAAGAATA-GCATTTTTC 1 AACATAGTCTTCTCATTAGGATACACGATATTGATGTTTTGGTTTCGCAAGAA-AGGCATTTTTC * * * * * * * * 1286100 CCACCAATTTTTTTCAAGTCTAAGTTCATTCCTTAAATAAGACAGATATGTATTCTAGTAAAGAT 65 CCACCAATTTTTGTAAAGTCTAAGTTCATTCCTCAAATAAGACAAACATGGATTCTACTAATGAT * * * * 1286165 CTTCATTCATTTTGTGATTGGGCACTATAAACACATT-TTCCTCATTAGGAGAAATGATAATGAT 130 CTTCACTCATTTTATGATTAGGCACTATAAACACATTCTT-CTCATTAGGATAAATGATAATGAT * ** * * * 1286229 GATTTTTTTAGCACAAAAATCTTTTCTTTTCCTTATTTTCCTTAAAATCGAAATTCATTGCTTAA 194 GATTTTTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCGAAATTCATCGCTTAA 1286294 ATAGGACAAGCATCGATTCTTACAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACAT 259 ATAGGACAAGCATCGATTCTT-CAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACAT 1286359 TCCCTTCATTAGGATGCGTGACATTGATGCTTTGGTGTCACAAGAAAACCTTTACTTTCGACCGT 323 TCCCTTCATTAGGATGCGTGACATTGATGCTTTGGTGTCACAAGAAAACCTTT-CTTTCGACCGT * * * * * 1286424 TTTGATAGAGTCAAAGTTTATCATATAAATATGACAAACATGAATACTCATAACAATCCCCATTC 387 TTTGATAGAATCAAAGTTTGTC-TATAAATAAGACAAATATGAATACTCATAACAATCACCATTC 1286489 TTTTCAAGATTAGGCACCATA 451 TTTTCAAGATTAGGCACCATA * * ** * * * * * 1286510 AACAAAGTCTTTTCCCTAGGATACATGATATTGACGTTTTGGTTACACAAGAAAGGCGTTTTTCC 1 AACATAGTCTTCTCATTAGGATACACGATATTGATGTTTTGGTTTCGCAAGAAAGGCATTTTTCC * * * ** * * 1286575 CACTAATTTTTGTAATGTATAAGTTTGTACCTCAAATGAGACAAACATGGATTCTACTAATGATC 66 CACCAATTTTTGTAAAGTCTAAGTTCATTCCTCAAATAAGACAAACATGGATTCTACTAATGATC * * * * 1286640 TTCACTCATTCTATAATTAGGCACTATAAACACATTCTTCTCATTAGGATAAATGATATTGACGA 131 TTCACTCATTTTATGATTAGGCACTATAAACACATTCTTCTCATTAGGATAAATGATAATGATGA * * 1286705 TTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATC-AAAGTTCATCGCTGAA 196 TTTT-TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCGAAA-TTCATCGCTTAA ** * * * * * * 1286769 ATAAAATAAGCTTCGATT-TTCGTGACAATTTCCACTCTTTTCAAGATTGGGAACCAAAAACACA 259 ATAGGACAAGCATCGATTCTTC--AACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACA * * * 1286833 TTCCCTTCATTAGGATACGTGACATTGATGCTTTGGTGTCACAAGAAAAGCATTTCTTTCCACCG 322 TTCCCTTCATTAGGATGCGTGACATTGATGCTTTGGTGTCACAAGAAAA-CCTTTCTTTCGACCG * * * * * * * ** * 1286898 TTTTGGTAGAATTAAAATTTGTCTCTTCAATAAGACAAGTAAGAATACTCATATTAATCACCACT 386 TTTTGATAGAATCAAAGTTTGTCT-ATAAATAAGACAAATATGAATACTCATAACAATCACCATT 1286963 CTTTTCAAGATTAGGCACCATA 450 CTTTTCAAGATTAGGCACCATA * * * 1286985 AACATAGTCTTCTCATTAGGATA-AGCGATATTGTTGTTTTGGTTTTGCAAGAAAGGCTTTTTTC 1 AACATAGTCTTCTCATTAGGATACA-CGATATTGATGTTTTGGTTTCGCAAGAAAGGCATTTTTC * * * * * * 1287049 TCACCAATTTTTGAAAAGTTTAAGTTCGTGT-CTCAAATGAGACAAACATAGATTCTACTAATGA 65 CCACCAATTTTTGTAAAGTCTAAGTTCAT-TCCTCAAATAAGACAAACATGGATTCTACTAATGA * ** * ** * * * * * 1287113 TCTACACTCATTTTATGATTAAACACTGTGCACACATTCTTGTAATTAGGATAATTGATATTGAG 129 TCTTCACTCATTTTATGATTAGGCACTATAAACACATTCTTCTCATTAGGATAAATGATAATGAT * 1287178 GATATTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAA 194 GAT-TTTTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAA 1287224 CATGACAAGC Statistics Matches: 1023, Mismatches: 144, Indels: 43 0.85 0.12 0.04 Matches are distributed among these distances: 473 2 0.00 474 239 0.23 475 597 0.58 476 184 0.18 477 1 0.00 ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37 Consensus pattern (471 bp): AACATAGTCTTCTCATTAGGATACACGATATTGATGTTTTGGTTTCGCAAGAAAGGCATTTTTCC CACCAATTTTTGTAAAGTCTAAGTTCATTCCTCAAATAAGACAAACATGGATTCTACTAATGATC TTCACTCATTTTATGATTAGGCACTATAAACACATTCTTCTCATTAGGATAAATGATAATGATGA TTTTTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCGAAATTCATCGCTTAAAT AGGACAAGCATCGATTCTTCAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCC CTTCATTAGGATGCGTGACATTGATGCTTTGGTGTCACAAGAAAACCTTTCTTTCGACCGTTTTG ATAGAATCAAAGTTTGTCTATAAATAAGACAAATATGAATACTCATAACAATCACCATTCTTTTC AAGATTAGGCACCATA Found at i:1289072 original size:476 final size:476 Alignment explanation
Indices: 1288168--1292225 Score: 2568 Period size: 476 Copynumber: 8.5 Consensus size: 476 1288158 ACAATCCCTG * * * * * * 1288168 GGATACATGATATTGACGTTTTGGTTACGCAAGAAAGGCATTTTTCCCTCCAATTTTTGTAATGT 1 GGATACATGATATTGATGTTTTGGTTTCACAAGAAAGGCATTTTTCCCACCAATTTTTATAAAGT * * * * 1288233 ATAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATGATATTCACCCATTCTGTGATT 66 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATGATCTTCACTCATTTTGTGATT * * * * * * * * 1288298 AGGCACCATGAACATATTCTCCTCATTAGGATAAATGATATTTATTATTTTCTTCTGCTTGGAAA 131 AGGCACTATAAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAA * * * * * * * 1288363 TCTTTTCTTTCCCCTATTTTCCTTAAAATCAAAGTTCAT-ACCCTAACTATGAAAAGCTTCAATT 196 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCA-CTTAAATAAGACAAGCATCGATT * * ** * 1288427 CTCGT-AGCAGTCTCTATT-TTTTCCAAGATTGGGAACCAAAAACACATTCATTTCATTAGAATA 260 CTCATGA-CAGTCTCCATTCTTTT-CAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATA * * * * * * * * 1288490 CATGACCTTGTTGCTTTGGTGTCACAGGAAATGCTTTTCTTTCCGCCATTTTTTATAGAATCAAT 323 CATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAA * * * * 1288555 GTTTGTCTCTTAAATAAGACAAATATGAATAGTCATACTAATCCCCATTCTTTTCAAGATTAGGA 388 GTTTATCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGC * 1288620 ACCATAAACGTAGTCTTCTCATTA 453 ACCATAAACATAGTCTTCTCATTA * ** ** * * 1288644 GGATATATGATATTGATACTTTGGTTTTGCAAGAAAGGCATTTCTCCCACCAATTTTTATAAAAT 1 GGATACATGATATTGATGTTTTGGTTTCACAAGAAAGGCATTTTTCCCACCAATTTTTATAAAGT * * 1288709 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATGATATTTACTCATTTTGTGATT 66 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATGATCTTCACTCATTTTGTGATT * * * * 1288774 AGGCATTGTAAACACATTCTCTTCATCAGGATAAATGATATAGATGATTTTCTTTTGCATGGAAA 131 AGGCACTATAAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAA * * * ** * 1288839 TATTTTATTCT-CCCTAATTTCCTTAAAATTGAAGTTCATCACTTAAATAAGACAAGCATCTATT 196 TCTTTTCTT-TGCCCTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATT * * ** 1288903 CTTATGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATATG 260 CTCATGACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACA * 1288968 TGACATTAAT-CTTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAG 325 TGACATTGATGC-TTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAG * * * * * * 1289032 TTTATCTCTTCAGTTAGACAAACATGAATAAT-AGTACTAATCTCCA-TCTTTCTCTAGATTAGG 389 TTTATCTCTTAAATAAGACAAACATGAATACTCA-TACTAATCCCCATTCTTT-TCAAGATTAGG * * * 1289095 CACTATAAACAGAGT-TATCCCATTA 452 CACCATAAACATAGTCT-TCTCATTA * * * 1289120 GGATACACGATATTGATGTTTTGGTTTCACAAGAAAGGCATTTTTCCCTCCAATTTCTATAAAGT 1 GGATACATGATATTGATGTTTTGGTTTCACAAGAAAGGCATTTTTCCCACCAATTTTTATAAAGT * * 1289185 CTAAGTTCGTGCCTCAAATGAGACAAACATGTATTCTACTAATGATCTTCGCTCATTTTGTGATT 66 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATGATCTTCACTCATTTTGTGATT * * * 1289250 AAGCACTATAAATACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAA 131 AGGCACTATAAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAA * * * * 1289315 TCTTTTTTTTGCCCAATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACATGCATCGATTC 196 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTC * * * * 1289380 TCATAACAGTCTCTATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTA-TACGTGA 261 TCATGACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGA--T-A *** ** * * * * * * * *** * 1289444 CATTGAACCAAAAACACATTT-CTTTTGCATGGAAATCTTTTCTTTGCC-CTATTTTCCTTAAAA 323 CA-TG-A-CATTGATGC-TTTGGTGTCGCAAGAAAAGCTTTTCTTT-CCACCATTTTTGATAGAA * * * * * * * 1289507 TCAAAGTTTATCCCTTAAATAAGATAGACATCG-ATTCT-GTAAC-AGTCTCCATTCTTTTCAAG 383 TCAAAGTTTATCTCTTAAATAAGACAAACAT-GAATACTCAT-ACTAATCCCCATTCTTTTCAAG * * * * * * * 1289569 ATTGGGAACCAAAAACACATTC-CCGTCATTG 446 ATTAGGCACCATAAACATAGTCTTC-TCATTA * * * * * * * 1289600 GGATAAATGACATTGATGCTTTGGTGTCACAGGCAAA-GC--TTTTCCGTCAACCGATTTTGATA 1 GGATACATGATATTGATGTTTTGGTTTCACAAG-AAAGGCATTTTTCC--C-ACCAATTTTTATA * * * * * * * 1289662 GAA-TCAAAGTAT-GT-CTATTAAATCAGACAAACATGAATACTCATACTAAT-CTC-T-ATTC- 62 -AAGTCTAAGT-TCGTGC-CTCAAATGAGACAAACATGGAT--TC-TACTAATGATCTTCACTCA * ** * * * * * * * 1289720 TTCTCAGAATTAGGCACCATAAACATAGTCT-TCTCATTATGATATAGGATATTGATG-TTTTGG 121 TTTTGTG-ATTAGGCACTATAAACACATTCTCT-TCATTAGGATAAATGATATTGATGATTTT-C * * * * * * * * 1289783 TTTCGCA-AGAAAGGCATTTT-TCT-CACTAATTTT--TGTAAAGTCTAAGTTCATGC-CTCAAA 183 TTTTGCATGGAAA-TC-TTTTCTTTGCCCT-ATTTTCCT-TAAAATCAAAGTTCAT-CACTTAAA * * * * * * * * * * 1289842 TGAGACAAACATGGATTCTAAT-A-ATGATCTACACTCATTTT-ATGATTAGGCACTATAAAA-A 243 TAAGACAAGCATCGATTCTCATGACA-G-TCTCCATTC-TTTTCAAGATTGGGAACCA-AAAACA * * * ** * * ** * * * * * * * 1289903 CATTCTCGTAATTAGGATA-ATTGATGTTGAGGATTTTCTTTTGCATGGAAATCTTTTCTTTGCT 304 CATTCCCTTCATTAGGATACA-TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA * *** * * ** * * * * 1289967 CTATTTTCCTTACAATCAAAGTTCATAC-CTTAAATTTGA-AAAGCTTCG-ATTCTCATAATAGT 368 CCATTTTTGATAGAATCAAAGTTTAT-CTCTTAAATAAGACAAA-CAT-GAATACTCATACTAAT * * ** * * 1290029 CTCCATTCTTTTCAAGATTTGAAAGCCA-AAACACATTC-TCTTCATTA 430 CCCCATTCTTTTCAAGATTAGGCA-CCATAAACATAGTCTTC-TCATTA * * * * * *** * 1290076 TGG-CACATGACATTGATGCTTTT-GTGTT-ATAGGAAAAGC--TTTTCTGTCC-ATTATAATAT 1 -GGATACATGATATTGATG-TTTTGGT-TTCACAAGAAAGGCATTTTTCCCACCAATT-T-TTAT * * * * ** *** *** * * * * * 1290135 ACAA-TATTGATGTT-TTG-GT--TTTGCAAGA-AAGGTTTTTTTCTCACCAAT-TTTTGTAAAG 61 A-AAGT-CT-AAGTTCGTGCCTCAAATG--AGACAAACATGGATTCT-ACTAATGATCT-T-CAC * * * * ** * * 1290193 TCCAAGTTCTGCCTCAAATGAGACAAAC-ATGGATTCTACTATCGATCTACACTCATTTCATGAT 118 T-C-A-TTTTG--T--GATTAGGC--ACTAT--AAAC-AC-AT---TCT-C-TTCA-TT-AGGAT * * ** * * * * * * * * 1290257 -TAGGCACTATAAACTCATTTTC-CTTGTC-TGGATAAATGGTATTCAAGATT-CTCT-TTTGCA 163 AAATG-A-TATTGA-TGATTTTCTTTTG-CATGG--AAAT-CTTTTC---TTTGCCCTATTTTCC ** ** * * * * * * * * * * * 1290317 TGGAAATC--TTTTCTTTGCCCTATTTTCCATTAA-ATCAAAC-T-TAATCCCATAAACAAGACA 218 TTAAAATCAAAGTTC-AT---C-A-CTT-AAATAAGA-CAAGCATCGATTCTCAT-GAC-AGTCT ** * ** * ***** ** 1290377 AGAATCAATTC----TT-GTAA-CTGTCTC-CATTCTTTTCAAGATTAGGAACCAAAAACACATT 273 CCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTC---A-T------------------ * * * * ** 1290435 CCCTTCATTAGGATACATGACAGTGATACTTTGGTGTCACAAGAAAAGCTTTTTTTTCCTTCATT 316 --------TAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATT * * * * 1290500 TTTGATAGAATCAAAGTTTCTCTCTTAAATAAAACAAACAGGAATAGTCATACTAATCCCCATTC 373 TTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTC * * * * * 1290565 TTTTTAGGATTAGGCACCATAAACGTAGCCTTTTCATTA 438 TTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTA * * * * * * 1290604 TGATACACGATATTGATGTTTTGGTCTCACAAGAAAGACATTTTTCCCACCAATTTTTGTGAAGT 1 GGATACATGATATTGATGTTTTGGTTTCACAAGAAAGGCATTTTTCCCACCAATTTTTATAAAGT * * * * 1290669 CTAAGTTCATGCCTTAAATGAGACAAACCT-GATTCTACTAAT-ATCTTCACTCATTTTATGATT 66 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATGATCTTCACTCATTTTGTGATT * * * 1290732 AGG-ACTATAAACACATTCTCCTCATTAGGATAAATGATAATGATGATTTTCTTTTGCATGAAAA 131 AGGCACTATAAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAA * * * 1290796 TCTTTTCTTTGCCTTATTTTCCTAAAAATCAAAGTTCATCACTTAAATAAGACAAGTATCGATTC 196 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTC * * * 1290861 TCGTGACAGTCTCCATTCATTTAAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAT 261 TCATGACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAT * * * 1290926 GACATTGATGCTTTGGTGT-GCAAGAAAAGCATTTCTTTCCACCATTTCTGATAGAATTAAAGTT 326 GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTT * * * * 1290990 TCTCTCTTTAATAAGACAAACACGAATACTCATACTAATTCCCATTC-TTTC--G---A--CACC 391 TATCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACC * 1291047 ATAAACATAGTCTTTTCATTA 456 ATAAACATAGTCTTCTCATTA * * * * 1291068 TGATACATGACATTGATGCTTTGGTTTCACAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGT 1 GGATACATGATATTGATGTTTTGGTTTCACAAGAAAGGCATTTTTCCCACCAATTTTTATAAAGT * * * * * 1291133 CTAAGTTCCTTCCTCAAATAAGACAAACATGGA-TCTAGTAATGATCTACACTCATTTTGTGATT 66 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATGATCTTCACTCATTTTGTGATT * * * * *** 1291197 GGGCACTATAAACGCATTCT-TCTCATTAGGATAAATGATAATGATGATTTTCTTTAGCACAAAA 131 AGGCACTATAAACACATTCTCT-TCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAA * * * * * 1291261 ATCCTTTCTTTGCCATATTTTCCTTAAAATCGAAA-TTCATCGCTTAAGTAGGACAAGCATCGAT 195 ATCTTTTCTTTGCCCTATTTTCCTTAAAATC-AAAGTTCATCACTTAAATAAGACAAGCATCGAT * * * 1291325 TCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATGC 259 TCTCATGACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATAC * * * * * 1291390 GTGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTACTTTCGA--TTGTTTTGATAGAATCAAA 324 ATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCAT-TTTTGATAGAATCAAA * 1291453 G-------CTT--ATAAGACAAACATGAATACTTATAAC-AATCCCCATTCTTTTCAAGATTAGG 388 GTTTATCTCTTAAATAAGACAAACATGAATACTCAT-ACTAATCCCCATTCTTTTCAAGATTAGG * * * 1291508 CACCATAAACAAAGTCTTTTCACTA 452 CACCATAAACATAGTCTTCTCATTA * * * * * 1291533 GGCTACATGATATTGATGTTTTGGTTACACAAGAAAGGCATTTTTCCCCCCAATTTTTGTAATGT 1 GGATACATGATATTGATGTTTTGGTTTCACAAGAAAGGCATTTTTCCCACCAATTTTTATAAAGT * * ** 1291598 CTAAGTTCATGCCTCAAATGAGACACACATGGATTCTACTAATGATCTTCACTCATCCTGTGATT 66 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATGATCTTCACTCATTTTGTGATT * ** * * * * 1291663 AGGCACTATAAACACATTTTCCGCATTAGGATAAATGGTATTTATGATTTTCTTTTGCTTGAAAA 131 AGGCACTATAAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAA 1291728 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTC 196 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTC * * * * * * * * 1291793 CCGA-GATAGTCTCCACTCCTTTCAAGATTGAGAACGAAAAACACATTCCTTTCATTAGGATACG 261 TC-ATGACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACA * * * * 1291857 TGACATTGATGCTTTGGTGCCGCAAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATTAAAGT 325 TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGT * * * * * * 1291922 TTGTCTCTTCAATAAGACAAACATGAATACTCATATTAATCACCATTCTTTTTAGGATTAGGCAC 390 TTATCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCAC * * 1291987 CATAAACATAGTCTTCTGACTA 455 CATAAACATAGTCTTCTCATTA * ** * * * 1292009 GGATACACGATATTGATGTTTTGGTTTTGCAAGAAAAGCTTTTTTCTCACCAATTTTTGA-AAAG 1 GGATACATGATATTGATGTTTTGGTTTCACAAGAAAGGCATTTTTCCCACCAATTTTT-ATAAAG * * * * 1292073 -CTTAAGTTCGTGCCTTAAATGAGACAAACATAGATTCTA-AAATGATCTACACTCATTTTGTGA 65 TC-TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATGATCTTCACTCATTTTGTGA * * * 1292136 TTAGGCACTATAAACACATTCT-TGTAATTAGGATAATTGATATTGAGGATTTTCTTTTGCATGG 129 TTAGGCACTATAAACACATTCTCT-TCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGG 1292200 AAATCTTTTCTTTGCCCTATTTTCCT 193 AAATCTTTTCTTTGCCCTATTTTCCT 1292226 CAAAGTTCAT Statistics Matches: 2781, Mismatches: 581, Indels: 441 0.73 0.15 0.12 Matches are distributed among these distances: 457 31 0.01 458 6 0.00 459 3 0.00 460 1 0.00 463 1 0.00 464 115 0.04 465 137 0.05 466 430 0.15 467 38 0.01 468 1 0.00 469 1 0.00 470 1 0.00 471 11 0.00 472 84 0.03 473 35 0.01 474 19 0.01 475 186 0.07 476 889 0.32 477 21 0.01 478 9 0.00 479 11 0.00 480 140 0.05 481 170 0.06 482 20 0.01 483 6 0.00 484 9 0.00 485 2 0.00 486 1 0.00 487 1 0.00 490 3 0.00 492 3 0.00 493 6 0.00 494 6 0.00 495 6 0.00 496 19 0.01 497 13 0.00 498 19 0.01 499 8 0.00 500 11 0.00 501 22 0.01 502 8 0.00 503 20 0.01 504 13 0.00 505 22 0.01 506 6 0.00 507 5 0.00 508 4 0.00 509 1 0.00 510 3 0.00 513 2 0.00 514 2 0.00 515 2 0.00 516 2 0.00 517 2 0.00 519 4 0.00 521 1 0.00 523 3 0.00 524 1 0.00 525 1 0.00 526 2 0.00 527 16 0.01 528 134 0.05 529 16 0.01 530 11 0.00 531 5 0.00 ACGTcount: A:0.31, C:0.19, G:0.13, T:0.36 Consensus pattern (476 bp): GGATACATGATATTGATGTTTTGGTTTCACAAGAAAGGCATTTTTCCCACCAATTTTTATAAAGT CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATGATCTTCACTCATTTTGTGATT AGGCACTATAAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAA TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTC TCATGACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAT GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTT TATCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACC ATAAACATAGTCTTCTCATTA Found at i:1294547 original size:20 final size:20 Alignment explanation
Indices: 1294522--1294589 Score: 87 Period size: 20 Copynumber: 3.8 Consensus size: 20 1294512 TTACAAGCCA 1294522 ATGTATCGATACATTTTAGG 1 ATGTATCGATACATTTTAGG 1294542 ATGTATCGATACA---T--- 1 ATGTATCGATACATTTTAGG 1294556 -TGTATCGATACATTTTAGG 1 ATGTATCGATACATTTTAGG 1294575 ATGTATCGATACATT 1 ATGTATCGATACATT 1294590 GTATCGATAC Statistics Matches: 41, Mismatches: 0, Indels: 14 0.75 0.00 0.25 Matches are distributed among these distances: 13 12 0.29 16 1 0.02 17 1 0.02 20 27 0.66 ACGTcount: A:0.31, C:0.12, G:0.18, T:0.40 Consensus pattern (20 bp): ATGTATCGATACATTTTAGG Found at i:1294561 original size:13 final size:13 Alignment explanation
Indices: 1294543--1294601 Score: 58 Period size: 13 Copynumber: 5.0 Consensus size: 13 1294533 CATTTTAGGA 1294543 TGTATCGATACAT 1 TGTATCGATACAT 1294556 TGTATCGATACAT 1 TGTATCGATACAT ** 1294569 T-T-T--A-GGA- 1 TGTATCGATACAT 1294576 TGTATCGATACAT 1 TGTATCGATACAT 1294589 TGTATCGATACAT 1 TGTATCGATACAT 1294602 CTTGTGTGTA Statistics Matches: 36, Mismatches: 4, Indels: 12 0.69 0.08 0.23 Matches are distributed among these distances: 7 1 0.03 8 2 0.06 9 2 0.06 11 2 0.06 12 2 0.06 13 27 0.75 ACGTcount: A:0.31, C:0.14, G:0.17, T:0.39 Consensus pattern (13 bp): TGTATCGATACAT Found at i:1294565 original size:33 final size:33 Alignment explanation
Indices: 1294523--1294619 Score: 162 Period size: 33 Copynumber: 3.0 Consensus size: 33 1294513 TACAAGCCAA 1294523 TGTATCGATACATTTTAGGATGTATCGATACAT 1 TGTATCGATACATTTTAGGATGTATCGATACAT 1294556 TGTATCGATACATTTTAGGATGTATCGATACAT 1 TGTATCGATACATTTTAGGATGTATCGATACAT * 1294589 TGTATCGATACATCTT-GTG-TGTATCGATACA 1 TGTATCGATACATTTTAG-GATGTATCGATACA 1294620 AACAGTTAAG Statistics Matches: 62, Mismatches: 1, Indels: 3 0.94 0.02 0.05 Matches are distributed among these distances: 32 13 0.21 33 49 0.79 ACGTcount: A:0.29, C:0.13, G:0.19, T:0.39 Consensus pattern (33 bp): TGTATCGATACATTTTAGGATGTATCGATACAT Found at i:1294719 original size:13 final size:13 Alignment explanation
Indices: 1294701--1294725 Score: 50 Period size: 13 Copynumber: 1.9 Consensus size: 13 1294691 ACATTTGGTC 1294701 ATGTATCGATACA 1 ATGTATCGATACA 1294714 ATGTATCGATAC 1 ATGTATCGATAC 1294726 TGTGCATTAT Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 12 1.00 ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32 Consensus pattern (13 bp): ATGTATCGATACA Found at i:1294790 original size:52 final size:53 Alignment explanation
Indices: 1294683--1294818 Score: 220 Period size: 52 Copynumber: 2.6 Consensus size: 53 1294673 TTCTTAACAA **** * 1294683 GTATCGATACATTTGGTCATGTATCGATACAATGTATCGATACTGTGCATTAT 1 GTATCGATACATTTGAAGGTGTATCGATACAATGTATCAATACTGTGCATTAT 1294736 GTATCGATACATTTGAAGGTGTATCGATA-AATGTATCAATACTGTGCATTAT 1 GTATCGATACATTTGAAGGTGTATCGATACAATGTATCAATACTGTGCATTAT 1294788 GTATCGATACATTTGAAGGTGTATCGATACA 1 GTATCGATACATTTGAAGGTGTATCGATACA 1294819 TTTCAGGGTT Statistics Matches: 77, Mismatches: 5, Indels: 2 0.92 0.06 0.02 Matches are distributed among these distances: 52 51 0.66 53 26 0.34 ACGTcount: A:0.31, C:0.13, G:0.20, T:0.36 Consensus pattern (53 bp): GTATCGATACATTTGAAGGTGTATCGATACAATGTATCAATACTGTGCATTAT Found at i:1296769 original size:158 final size:156 Alignment explanation
Indices: 1296549--1297249 Score: 376 Period size: 158 Copynumber: 4.4 Consensus size: 156 1296539 ATTGGTGGGT * * * * * * 1296549 AAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGAGGCATCCTTATGAGAAGACAA--TGTTT 1 AAAAAGCATTTCTTG-CAAACCAAAGCATCAATATCATGTATCCTAATGAG--GA-AATGTGTTT * * 1296612 GTGGTGCCTAATCCAGAAAAGAATGGGAATAGTATGAGCATTTATGTTTGTCTTATTTAAAAAAC 62 ATGGTGCCTAATCCAGAAAAGAATGGGAATAGTATGAGAATTTATGTTTGTCTTATTTAAAAAAC 1296677 AAACTTTGATGCTATT-AAAAATGGTGTAAG 127 AAACTTTGATGCT-TTAAAAAATGGTGTAAG * * * * * 1296707 GAAAAGCTTTTCTTGCAACATCAAAGCATCAATGTCATGTATCCTAATGAAGGAAATGTGTTTTT 1 AAAAAGCATTTCTTGCAA-ACCAAAGCATCAATATCATGTATCCTAATG-AGGAAATGTGTTTAT * * ** * * * * * * *** * * 1296772 GGTTCCCAATCTTGAAAAAGAATGGAGACTATTAGGGGAATTGATGCTTG-CTTATTTTCGAGAT 64 GGTGCCTAATCCAG-AAAAGAATGG-GAATAGTATGAGAATTTATGTTTGTCTTATTTAAAAAAC * * * 1296836 AAACTTTGAT--TTTGAGGAAAATGGGGCAA- 127 AAACTTTGATGCTTT-A-AAAAATGGTGTAAG * ** * * * * 1296865 AGAAAAG-ATTTCAATGCCAAATAAAATCATTAATATCGTTTATCCTAATGAGGAGAATGTGTTT 1 A-AAAAGCATTTC-TTG-CAAACCAAAGCATCAATATCATGTATCCTAATGAGGA-AATGTGTTT * ** * ** * * * * ** 1296929 ATTGTGAATAAT-CACCAAAAGAATGAAAATCAATACT-AGAATCTATGTTTGTCTCATTTTAGG 62 ATGGTGCCTAATCCA-GAAAAGAATGGGAAT-AGTA-TGAGAATTTATGTTTGTCTTATTTAAAA * * 1296992 CACGAA-TTT-A-GACTTTACAAAAATTGGTGT--G 124 AACAAACTTTGATG-CTTTA-AAAAA-TGGTGTAAG * * * * * 1297023 TAAAAAGAATTTCTTGCGAAACCAAAGCATCAATATAAGGTATCCTAATGA-GAAGACTATGTTC 1 -AAAAAGCATTTCTTGC-AAACCAAAGCATCAATATCATGTATCCTAATGAGGAA-A-TGTGTTT * * * * 1297087 ACGGTGCCTAATCCAGAAAAGAATGGGGATTAGTATGAGCATTTATGTTTGTCTTATATAAAAAA 62 ATGGTGCCTAATCCAGAAAAGAAT-GGGAATAGTATGAGAATTTATGTTTGTCTTATTTAAAAAA * * 1297152 CAAACTTTGATTCTATT-AAAAATGGTGGAA- 126 CAAACTTTGATGCT-TTAAAAAATGGTGTAAG * * * ** * * * 1297182 AAAAAGCTTTTCTTGCGACACCAAAGTATCAATGGCAAGTATCCTAATGAAGGGAATGTGTTTTT 1 AAAAAGCATTTCTTGC-AAACCAAAGCATCAATATCATGTATCCTAATG-AGGAAATGTGTTTAT 1297247 GGT 64 GGT 1297250 TCCCAATCTT Statistics Matches: 395, Mismatches: 110, Indels: 76 0.68 0.19 0.13 Matches are distributed among these distances: 156 5 0.01 157 13 0.03 158 224 0.57 159 126 0.32 160 25 0.06 161 2 0.01 ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31 Consensus pattern (156 bp): AAAAAGCATTTCTTGCAAACCAAAGCATCAATATCATGTATCCTAATGAGGAAATGTGTTTATGG TGCCTAATCCAGAAAAGAATGGGAATAGTATGAGAATTTATGTTTGTCTTATTTAAAAAACAAAC TTTGATGCTTTAAAAAATGGTGTAAG Found at i:1296909 original size:475 final size:476 Alignment explanation
Indices: 1295210--1297470 Score: 2921 Period size: 476 Copynumber: 4.7 Consensus size: 476 1295200 GTTGTCATCA * * * * 1295210 ATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTTATACTATCAAAAATGGTGG 1 ATTAGTATGAGCATTCATGTTTGTCTTATTTAAGAAACAAACTTTGATTCTATCAAAAATGGTGG * * * * 1295275 AAAGAAAAGCATTTGTTGCAACACCAAAGCATCAATGTCATGTTTCTTAATGAAGGGAATGTGTT 66 AAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTT * * * * * * * 1295340 TTCGCTTCCGAATCTTGAAAAGAATGGAGACTGTTGCGAGAATCGATGCTTGTTTCTATTTAAGG 131 TTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGTCT-TATTTAAGG * * * * * 1295405 GATGAACTTTTATTTTAAAGAAAATAGGGCAAAGAGAAGATTTTC-ATGTAAAAGAAAATCCTCA 195 GATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA-TTTCAATGCAAAAGAAAATCATCA * * 1295469 ATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCTTAATCATC-AAATTAATGAAGATCA 259 ATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA-CAAAATGAATGAAGATCA * * 1295533 TTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAGCTTAGACTTTACAAAAATTGGTGGGTAA 323 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGTAA * * ** * 1295598 AACGCATTTCTTGTGAAACCAAAGCATCAATATGAGGTATTGTAACGAGAAGACTATGTTTATGG 388 AAAGCATTTCTTGCGAAACCAAAGCATCAATATGAGGTATCCTAATGAGAAGACTATGTTTATGG * * 1295663 TGCTTAATCCGGAAAAGAATGGGG 453 TGCCTAATCCAGAAAAGAATGGGG * * * * * 1295687 ATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAAACAATCTTTGATTTTATAAAAAACGGTGG 1 ATTAGTATGAGCATTCATGTTTGTCTTATTTAAGAAACAAACTTTGATTCTATCAAAAATGGTGG * * * 1295752 AAAGAAAAGCGTTTCTTTCAACA-CAGAAGCATCAAATGTCATGTATCCTAACGAAGGGAATGTG 66 AAAGAAAAGCTTTTCTTGCAACACCA-AAGCATC-AATGTCATGTATCCTAATGAAGGGAATGTG * * * * * * 1295816 -TTTTGCCTTCCCAATCTTGAAAATAATGGGGACTGTTACAAGAATCAATGCTTGTCTTATATAA 129 TTTTTG-GTTCCCAATCTTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGTCTTATTTAA * * 1295880 GGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAAAAAAGATTTCCAA-GCAAAAGAAAATCAT 193 GGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT-CAATGCAAAAGAAAATCAT * * * * * * 1295944 CGACATCATTTATCGTAATGAGGAGAATGTGTTTATTGTGCCTAATCACCAAATGAATGAAGATT 257 CAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATC * * * 1296009 ATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTTCAAAAATTGGTGGGTT 322 ATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGTA * * * * 1296074 AAAAGCCTTTCTTGCGAAGCTAAAGCATCAATCTGAGGTATCCTAATGAGAAGACTATGTTTATG 387 AAAAGCATTTCTTGCGAAACCAAAGCATCAATATGAGGTATCCTAATGAGAAGACTATGTTTATG * * * 1296139 GTGCCTAATTCGGAAAAGAATGAGG 452 GTGCCTAATCCAGAAAAGAATGGGG * *** 1296164 ATTAGTATGA-CTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAACCAGTG 1 ATTAGTATGAGC-ATTCATGTTTGTCTTATTTAAGAAACAAACTTTGATTCTATCAAAAATGGTG * * * 1296228 GAAGGAAAAGCTTTTCTTGCAACACCAAAGCATTAATGTCATGTATCCTAATGAAGGGAATGAG- 65 GAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGT * * * * 1296292 TTTTGGCTTCCCAATCCTGAAAATAATAGAGAC-AGTTACTAGAATCGATGCTTGTCTTATTTAA 130 TTTTGG-TTCCCAATCTTGAAAAGAATGGAGACTA-TTACAAGAATCGATGCTTGTCTTATTTAA * * * * 1296356 GGGATGAACTTTGCTTTTAAGGAAAATAGGGCAAAGAAAAGATTACCATGCAAAACAAAATCATC 193 GGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCATC * * * * 1296421 AATATCATTTATCCTATTAAGGAGGATGTGTTTATAGTGCCTAATCAAAAAATGAATGAAGATCA 258 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA * * * * * * 1296486 TTACTAAAATCCGTATTTGTCTTATTTGAGGCATGAACTTTA-ACCTTACAAAAATTGGTGGGTA 323 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAAC-TTAGACTTTACAAAAATTGGTGGGTA * * * * * * 1296550 AAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGAGGCATCCTTATGAGAAGACAATGTTTGTG 387 AAAAGCATTTCTTGCGAAACCAAAGCATCAATATGAGGTATCCTAATGAGAAGACTATGTTTATG 1296615 GTGCCTAATCCAGAAAAGAAT-GGG 452 GTGCCTAATCCAGAAAAGAATGGGG * * * * * * 1296639 AATAGTATGAGCATTTATGTTTGTCTTATTTAAAAAACAAACTTTGATGCTATTAAAAATGGTGT 1 ATTAGTATGAGCATTCATGTTTGTCTTATTTAAGAAACAAACTTTGATTCTATCAAAAATGGTGG * * * 1296704 AAGGAAAAGCTTTTCTTGCAACATCAAAGCATCAATGTCATGTATCCTAATGAAGGAAATGTGTT 66 AAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTT *** * ** * 1296769 TTTGGTTCCCAATCTTGAAAAAGAATGGAGACTATTAGGGGAATTGATGCTTG-CTTATTTTCGA 131 TTTGGTTCCCAATCTTG-AAAAGAATGGAGACTATTACAAGAATCGATGCTTGTCTTATTTAAGG * * * * * * 1296833 GATAAACTTTGATTTTGAGGAAAATGGGGCAAAGAAAAGATTTCAATGCCAAATAAAATCATTAA 195 GATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCATCAA * * ** * * 1296898 TATCGTTTATCCTAATGAGGAGAATGTGTTTATTGTGAATAATCACCAAAA-GAATGAAAATCAA 260 TATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA-CAAAATGAATGAAGATCAT * * * * 1296962 TACTAGAATCTATGTTTGTCTCATTTTAGGCACGAATTTAGACTTTACAAAAATTGGTGTGTAAA 324 TACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGTAAA * * * * 1297027 AAGAATTTCTTGCGAAACCAAAGCATCAATATAAGGTATCCTAATGAGAAGACTATGTTCACGGT 389 AAGCATTTCTTGCGAAACCAAAGCATCAATATGAGGTATCCTAATGAGAAGACTATGTTTATGGT 1297092 GCCTAATCCAGAAAAGAATGGGG 454 GCCTAATCCAGAAAAGAATGGGG * * * * 1297115 ATTAGTATGAGCATTTATGTTTGTCTTATATAAAAAACAAACTTTGATTCTATTAAAAATGGTGG 1 ATTAGTATGAGCATTCATGTTTGTCTTATTTAAGAAACAAACTTTGATTCTATCAAAAATGGTGG * * * * 1297180 AAA-AAAAGCTTTTCTTGCGACACCAAAGTATCAATGGCAAGTATCCTAATGAAGGGAATGTGTT 66 AAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTT * * * 1297244 TTTGGTTCCCAATCTTGAAAAGAGTGGAAACTATTACAATAATCGATGCTTGTCTTATTTAAGGG 131 TTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGTCTTATTTAAGGG * * 1297309 ATGAACATTGATTTCAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCTAAACA-AAAATCATCA 196 ATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGC-AAA-AGAAAATCATCA * ** * * * 1297373 ATATCATTTTTTTTAATGAGGAGAATGTGTTTATAGCGCCTAATCACAAAATGAATGAAGACCCT 259 ATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAT * * * 1297438 TACTAGAATCAATGCTTGTCTCATTTGTGGCAC 324 TACTAGAATCCATGTTTGTCTCATTTGAGGCAC 1297471 TTTAAGGTCA Statistics Matches: 1544, Mismatches: 217, Indels: 47 0.85 0.12 0.03 Matches are distributed among these distances: 474 31 0.02 475 494 0.32 476 517 0.33 477 428 0.28 478 74 0.05 ACGTcount: A:0.36, C:0.13, G:0.19, T:0.31 Consensus pattern (476 bp): ATTAGTATGAGCATTCATGTTTGTCTTATTTAAGAAACAAACTTTGATTCTATCAAAAATGGTGG AAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTT TTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGTCTTATTTAAGGG ATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCATCAAT ATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA CTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGTAAAAA GCATTTCTTGCGAAACCAAAGCATCAATATGAGGTATCCTAATGAGAAGACTATGTTTATGGTGC CTAATCCAGAAAAGAATGGGG Found at i:1298349 original size:33 final size:32 Alignment explanation
Indices: 1298286--1298350 Score: 85 Period size: 32 Copynumber: 2.0 Consensus size: 32 1298276 ACAATTCACT * * * 1298286 ATGTATCAATACCAAGAACATGTATTGATACA 1 ATGTATCAATACAAAGAAAATGTATCGATACA * 1298318 ATGTATCGATACAAAGCAAAATGTATCGATACA 1 ATGTATCAATACAAAG-AAAATGTATCGATACA 1298351 TCTAGGTGTG Statistics Matches: 28, Mismatches: 4, Indels: 1 0.85 0.12 0.03 Matches are distributed among these distances: 32 14 0.50 33 14 0.50 ACGTcount: A:0.45, C:0.15, G:0.14, T:0.26 Consensus pattern (32 bp): ATGTATCAATACAAAGAAAATGTATCGATACA Found at i:1299018 original size:25 final size:25 Alignment explanation
Indices: 1298988--1299047 Score: 84 Period size: 25 Copynumber: 2.4 Consensus size: 25 1298978 ATAAAACTCT 1298988 CCCTTAATAAAATTTTTCTTTCTCC 1 CCCTTAATAAAATTTTTCTTTCTCC * * 1299013 CCCTTAGTAAGATTTTTCTTTCTCC 1 CCCTTAATAAAATTTTTCTTTCTCC ** 1299038 CTTTTAATAA 1 CCCTTAATAA 1299048 TAAATTTAAC Statistics Matches: 30, Mismatches: 5, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 25 30 1.00 ACGTcount: A:0.23, C:0.25, G:0.03, T:0.48 Consensus pattern (25 bp): CCCTTAATAAAATTTTTCTTTCTCC Found at i:1304260 original size:12 final size:11 Alignment explanation
Indices: 1304238--1304313 Score: 52 Period size: 12 Copynumber: 6.9 Consensus size: 11 1304228 AGAGAAAGAA * 1304238 GAGAGAGGAGG 1 GAGATAGGAGG 1304249 GATGATAGGAGG 1 GA-GATAGGAGG * 1304261 AGAGACAGGA-- 1 -GAGATAGGAGG * 1304271 GAGATAGTA-- 1 GAGATAGGAGG 1304280 GAGATAGGAGG 1 GAGATAGGAGG 1304291 GATGATAGGAGG 1 GA-GATAGGAGG * 1304303 AGAGACAGGAG 1 -GAGATAGGAG 1304314 AGATAATAGA Statistics Matches: 53, Mismatches: 6, Indels: 11 0.76 0.09 0.16 Matches are distributed among these distances: 9 15 0.28 11 4 0.08 12 30 0.57 13 4 0.08 ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09 Consensus pattern (11 bp): GAGATAGGAGG Found at i:1304270 original size:24 final size:24 Alignment explanation
Indices: 1304237--1304322 Score: 85 Period size: 24 Copynumber: 3.8 Consensus size: 24 1304227 AAGAGAAAGA * 1304237 AGAGAGAGGAGGGATGATAGGAGG 1 AGAGACAGGAGGGATGATAGGAGG * 1304261 AGAGACAGGA--GA-GAT---AGT 1 AGAGACAGGAGGGATGATAGGAGG * 1304279 AGAGATAGGAGGGATGATAGGAGG 1 AGAGACAGGAGGGATGATAGGAGG * * 1304303 AGAGACAGGAGAGATAATAG 1 AGAGACAGGAGGGATGATAG 1304323 AGAGAGGAGG Statistics Matches: 49, Mismatches: 7, Indels: 12 0.72 0.10 0.18 Matches are distributed among these distances: 18 11 0.22 20 2 0.04 21 6 0.12 22 2 0.04 24 28 0.57 ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10 Consensus pattern (24 bp): AGAGACAGGAGGGATGATAGGAGG Found at i:1304289 original size:42 final size:42 Alignment explanation
Indices: 1304228--1304346 Score: 184 Period size: 42 Copynumber: 2.8 Consensus size: 42 1304218 TAGCCCTCAA * * 1304228 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG 1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG * 1304270 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG 1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG * * * 1304312 AGAGATAATAGAGAGAGGAGGGATGACAGAAGGAG 1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG 1304347 GAGAGAAGAA Statistics Matches: 70, Mismatches: 7, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 42 70 1.00 ACGTcount: A:0.44, C:0.03, G:0.45, T:0.08 Consensus pattern (42 bp): AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG Found at i:1313331 original size:18 final size:19 Alignment explanation
Indices: 1313308--1313348 Score: 57 Period size: 19 Copynumber: 2.2 Consensus size: 19 1313298 TTTCAATAAT ** 1313308 TTTTAA-TTTATTTTCTTC 1 TTTTAATTTTATGATCTTC 1313326 TTTTAATTTTATGATCTTC 1 TTTTAATTTTATGATCTTC 1313345 TTTT 1 TTTT 1313349 TATGCTTTAG Statistics Matches: 20, Mismatches: 2, Indels: 1 0.87 0.09 0.04 Matches are distributed among these distances: 18 6 0.30 19 14 0.70 ACGTcount: A:0.17, C:0.10, G:0.02, T:0.71 Consensus pattern (19 bp): TTTTAATTTTATGATCTTC Found at i:1319431 original size:42 final size:42 Alignment explanation
Indices: 1319384--1319502 Score: 184 Period size: 42 Copynumber: 2.8 Consensus size: 42 1319374 TTCTTCTTTC * * 1319384 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT 1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT * 1319426 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT 1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT * * * 1319468 CTCCTCCTATCATCTCTCCTCTCTCTTCTTTCTCT 1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT 1319503 TTGAGGGCTA Statistics Matches: 70, Mismatches: 7, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 42 70 1.00 ACGTcount: A:0.08, C:0.45, G:0.03, T:0.44 Consensus pattern (42 bp): CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT Found at i:1319444 original size:24 final size:24 Alignment explanation
Indices: 1319408--1319493 Score: 85 Period size: 24 Copynumber: 3.8 Consensus size: 24 1319398 CCTCCTCTCT * 1319408 CTATTATCTCTCCTGTCTCTCCTC 1 CTATCATCTCTCCTGTCTCTCCTC * * * 1319432 CTATCATCCCTCC--TATCT-CTA 1 CTATCATCTCTCCTGTCTCTCCTC 1319453 C--T-ATCTCTCCTGTCTCTCCTC 1 CTATCATCTCTCCTGTCTCTCCTC * 1319474 CTATCATCTCTCCTCTCTCT 1 CTATCATCTCTCCTGTCTCT 1319494 TCTTTCTCTT Statistics Matches: 48, Mismatches: 8, Indels: 12 0.71 0.12 0.18 Matches are distributed among these distances: 18 7 0.15 19 1 0.02 20 4 0.08 21 6 0.12 22 4 0.08 23 1 0.02 24 25 0.52 ACGTcount: A:0.10, C:0.44, G:0.02, T:0.43 Consensus pattern (24 bp): CTATCATCTCTCCTGTCTCTCCTC Found at i:1319468 original size:18 final size:18 Alignment explanation
Indices: 1319399--1319469 Score: 52 Period size: 18 Copynumber: 3.6 Consensus size: 18 1319389 CCTGTCATCC * * 1319399 CTCCTCTCTCTATTATCT 1 CTCCTGTCTCTACTATCT * 1319417 CTCCTGTCTCTCCTCCTATCAT 1 CTCCTG--TCT-CTACTATC-T * 1319439 CCCTCCTATCTCTACTATCT 1 --CTCCTGTCTCTACTATCT 1319459 CTCCTGTCTCT 1 CTCCTGTCTCT 1319470 CCTCCTATCA Statistics Matches: 41, Mismatches: 6, Indels: 12 0.69 0.10 0.20 Matches are distributed among these distances: 18 15 0.37 20 4 0.10 21 13 0.32 22 4 0.10 24 5 0.12 ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44 Consensus pattern (18 bp): CTCCTGTCTCTACTATCT Found at i:1322083 original size:20 final size:20 Alignment explanation
Indices: 1322058--1322111 Score: 74 Period size: 20 Copynumber: 2.7 Consensus size: 20 1322048 GTTAGAAGCA * * 1322058 ATGTATCAATACAAT-TCATC 1 ATGTATCGATACAATGT-ACC 1322078 ATGTATCGATACAATGTACC 1 ATGTATCGATACAATGTACC 1322098 ATGTATCGATACAA 1 ATGTATCGATACAA 1322112 ATAGTGGTAG Statistics Matches: 31, Mismatches: 2, Indels: 2 0.89 0.06 0.06 Matches are distributed among these distances: 20 30 0.97 21 1 0.03 ACGTcount: A:0.39, C:0.19, G:0.11, T:0.31 Consensus pattern (20 bp): ATGTATCGATACAATGTACC Found at i:1322184 original size:19 final size:20 Alignment explanation
Indices: 1322140--1322193 Score: 83 Period size: 19 Copynumber: 2.8 Consensus size: 20 1322130 TTGGCAGTTT ** 1322140 CATGTATCGATACAATTGTC 1 CATGTATCGATACAATTGAA 1322160 CATGTATCGATACAA-TGAA 1 CATGTATCGATACAATTGAA 1322179 CATGTATCGATACAA 1 CATGTATCGATACAA 1322194 AACATAATGT Statistics Matches: 32, Mismatches: 2, Indels: 1 0.91 0.06 0.03 Matches are distributed among these distances: 19 17 0.53 20 15 0.47 ACGTcount: A:0.37, C:0.19, G:0.15, T:0.30 Consensus pattern (20 bp): CATGTATCGATACAATTGAA Found at i:1327646 original size:472 final size:472 Alignment explanation
Indices: 1326623--1327972 Score: 1762 Period size: 472 Copynumber: 2.8 Consensus size: 472 1326613 TTCGGGAGTA * * * * * 1326623 AAAAAGCCTTTCTTACAAAACCAAAGCATCAATATGCA-GTATCTTAACGAGAAGACTATATTTA 1 AAAAAGCCTTTCTTGCAAAACCAAAGCATCAATAT-AAGGTATCCTAATGAGAAGACTATGTTTA * * * * 1326687 TGGTGCCTAATCCTAGGAAGAAT-GAGGATTAGTATGAGTATTCT-TATTTGTCTTATTTAAGAG 65 TGGTGCCTAAT-CTAGAAAGAATAG-GGATTAGTAAGAGTATT-TATGTTTGTCTTATTTAAGAA * * * 1326750 ACAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAAGCATTTCATACAACACCAAAACATCGAT 127 ACAAACTTTGATTCTATCAAAAAAAGTGGAAAGAAAAGCATTTCATATAACACCAAAGCATCGAT * 1326815 GTCATGTATCCAAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAAAATGGAGACTATTA 192 GTCATGTATCCAAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTA * 1326880 CGAGAATCGATGCTTGTCTTATTTAAAGGATGAACTCTGATTTTAGTGAAGATAGGGCAAAGAAA 257 CGAGAATCGATGCTTGTCTTATTT-AAGG--GAACTCTGATTTTAATGAAGATAGGGCAAAGAAA * * ** * * * 1326945 AGATTGCAATGTAAAAGAAAGTCATCAATATCATTTATACTAATGAGGAAAACGTGTTTATACAG 319 AGATTTCAATGCAAAAGAAAGTCATCAATAGAATTTATACCAATGAAGAAAACGTGTGTATACAG * * * 1327010 CCTAATCACAAAATTAATGAAGATCACTACTAGAATCCATGTTTGTCATATTTGAGGCACGAACT 384 CCTAATCACAAAATGAATAAAGATCACTACTAGAATCCATGTCTGTCATATTTGAGGCACGAACT * * * 1327075 TAGACTTTTCAAAAATTTATGGGT 449 TAGACTTTACAAAAAGTGATGGGT * * 1327099 AAAAAGCCTTTCTTGCAAAACTAAAGCATCAATATGAGGTATCCTAATGAGAAGACTATGTTTAT 1 AAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATAAGGTATCCTAATGAGAAGACTATGTTTAT * * 1327164 GGTGCCTAATCTAGAAAATAATAGGGATTACTAAGAGTATTTATGTTTGTCTTATTTAAGAAACA 66 GGTGCCTAATCTAG-AAAGAATAGGGATTAGTAAGAGTATTTATGTTTGTCTTATTTAAGAAACA * * * * 1327229 AACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTATAACACCGAAGCATCGATGTC 130 AACTTTGATTCTATCAAAAAAAGTGGAAAGAAAAGCATTTCATATAACACCAAAGCATCGATGTC * * * * * * * * 1327294 ATGTATCCTAATCAATGGAAAGTATTTTGGCTTCCCAATTTTGAAAAGAATGGAGACTGTTACAA 195 ATGTATCCAAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTACGA * * * * * * * * 1327359 GAAACAATGCTTGTCTTATTTAA-GGAACTTTCATTTTAAAGAAAATAAGGCAAAGAAAAAATTT 260 GAATCGATGCTTGTCTTATTTAAGGGAACTCTGATTTTAATGAAGATAGGGCAAAGAAAAGA-TT * * * * ** 1327423 TCAA-GCAAAAGAAAATCATCAATAGAATTTATCCCAATGAAGAGAATGTGTGTATAGTGCCTAA 324 TCAATGCAAAAGAAAGTCATCAATAGAATTTATACCAATGAAGAAAACGTGTGTATACAGCCTAA * * * * * 1327487 TTACCAAATGAATAAAGATCATTATTAGAATCCATGTCTGTC-TCATTTGATGCACGAACTTAGA 389 TCACAAAATGAATAAAGATCACTACTAGAATCCATGTCTGTCAT-ATTTGAGGCACGAACTTAGA 1327551 CTTTACAAAAAGTGATGGGT 453 CTTTACAAAAAGTGATGGGT ** * 1327571 AAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATAAGGTATCCAAATGAGAAGACTATGTTTAT 1 AAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATAAGGTATCCTAATGAGAAGACTATGTTTAT * * * * * 1327636 GGTGCCTAATCCAGGAAAGAATAAGTATTAGTAAGAGTATTCATGTTTGTCTTTTTTAAGAAACA 66 GGTGCCTAATCTA-GAAAGAATAGGGATTAGTAAGAGTATTTATGTTTGTCTTATTTAAGAAACA * * * 1327701 AACTTTGATTTTATCAAAAAAAAGTGGAAAGAAAAGCATTTCATGTAACACCAAAGCATCAATGT 130 AACTTTGATTCTATC-AAAAAAAGTGGAAAGAAAAGCATTTCATATAACACCAAAGCATCGATGT * 1327766 CATGTATCCAAATGAAGGGAATGTGTTTTGGCCTCCCAATCTTGAAAAGAATGGAGACTATTACG 194 CATGTATCCAAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTACG * 1327831 AGAATCGATACTTGTCTTATTTAAGGGATAAACTCTGATTTTAATGAAGATAGGGCAAAGAAAAG 259 AGAATCGATGCTTGTCTTATTTAAGGG---AACTCTGATTTTAATGAAGATAGGGCAAAGAAAAG ** * * * 1327896 ATTTCAATGCAAAAGAAAGTCATCAATATTATTTACACCAAT-AAGGAGAACGTGTTTATACTA- 321 ATTTCAATGCAAAAGAAAGTCATCAATAGAATTTATACCAATGAA-GAAAACGTGTGTATAC-AG * 1327959 TCTAATCACAAAAT 384 CCTAATCACAAAAT 1327973 AATTTGTGGG Statistics Matches: 750, Mismatches: 109, Indels: 29 0.84 0.12 0.03 Matches are distributed among these distances: 471 1 0.00 472 279 0.37 473 126 0.17 474 3 0.00 475 8 0.01 476 249 0.33 477 84 0.11 ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30 Consensus pattern (472 bp): AAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATAAGGTATCCTAATGAGAAGACTATGTTTAT GGTGCCTAATCTAGAAAGAATAGGGATTAGTAAGAGTATTTATGTTTGTCTTATTTAAGAAACAA ACTTTGATTCTATCAAAAAAAGTGGAAAGAAAAGCATTTCATATAACACCAAAGCATCGATGTCA TGTATCCAAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTACGAG AATCGATGCTTGTCTTATTTAAGGGAACTCTGATTTTAATGAAGATAGGGCAAAGAAAAGATTTC AATGCAAAAGAAAGTCATCAATAGAATTTATACCAATGAAGAAAACGTGTGTATACAGCCTAATC ACAAAATGAATAAAGATCACTACTAGAATCCATGTCTGTCATATTTGAGGCACGAACTTAGACTT TACAAAAAGTGATGGGT Found at i:1328810 original size:889 final size:885 Alignment explanation
Indices: 1327088--1328819 Score: 2643 Period size: 889 Copynumber: 2.0 Consensus size: 885 1327078 ACTTTTCAAA * * 1327088 AATTTATGGGTAAAAAGCCTTTCTTGCAAAACTAAAGCATCAATATGAGGTATCCTAATGAGAAG 1 AATTTATGGGTAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGAGATATCCTAATGAGAAG * 1327153 ACTATGTTTATGGTGCCTAATCTAGAAAATAATAGGGATTACTAAGAGTATTTATGTTTGTCTTA 66 ACTATGTTTATGGTGCCTAATCTAGAAAAAAATAGGGATTACTAAGAGTATTTATGTTTGTCTTA * 1327218 TTTAAGAAACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTATAACACCGAA 131 TTTAAGAAACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTACAACACCGAA * * * * 1327283 GCATCGATGTCATGTATCCTAATCAATGGAAAGTATTTTGGCTTCCCAATTTTGAAAAGAATGGA 196 GCATCAATGCCATGTATCCTAATCAATGGAAAGTAGTTTGGCTTCCCAATCTTGAAAAGAATGGA 1327348 GACTGTTACAAGAAACAATGCTTGTCTTATTTAAGGAACTTTCATTTTAAAGAAAATAAGGCAAA 261 GACTGTTACAAGAAACAATGCTTGTCTTATTTAAGGAACTTTCATTTTAAAGAAAATAAGGCAAA * 1327413 GAAAAAATTTTCAAGCAAAAGAAAATCATCAATAGAATTTATCCCAATGAAGAGAATGTGTGTAT 326 GAAAAAATTTTCAAGCAAAAGAAAATCATCAATAGAACTTATCCCAATGAAGAGAATGTGTGTAT * * 1327478 AGTGCCTAATTACCAAATGAATAAAGATCATTATTAGAATCCATGTCTGTCTCATTTGATGCACG 391 AGTGCCTAATCACCAAATGAATAAAGATCATTACTAGAATCCATGTCTGTCTCATTTGATGCACG * 1327543 AACTTAGACTTTACAAAAAGTGATGGGTAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATAA 456 AACTTAGACTTTACAAAAAGTGATGGGTAAAAAGCCTTTCTTATGAAACCAAAGCATCAATATAA * * * * 1327608 GGTATCCAAATGAGAAGACTATGTTTATGGTGCCTAATCCAGGAAAGAATAAGTATTAGTAAGAG 521 GGTATCCAAATGAGAAGACTATGTTTACGATGCCTAATCCAGAAAAGAATAAGGATTAGTAAGAG * * * 1327673 TATTCATGTTTGTCTTTTTTAAGAAACAAACTTTGATTTTATCAAAAAAAAGTGGAAAGAAAAGC 586 TATTCATGTTTATCTTATTTAAGAAACAAACTTTGATTCTATCAAAAAAAAGTGGAAAGAAAAGC ** * * 1327738 ATTTCATGTAACACCAAAGCATCAATGTCATGTATCCAAATGAAGGGAATGTGTTTTGGCCTCCC 651 ATTTCATACAACACCAAAGCATCAATGTCATGTATCCAAAGGAAGGAAATGTGTTTTGGCCTCCC * 1327803 AATCTTGAAAAGAATGGAGACTATTACGAGAATCGATACTTGTCTTATTTAAGGGATAAACTCTG 716 AATCTTGAAAAGAATGGAGACTATTACGAAAATCGATACTTGTCTTATTTAAGGGATAAACTCTG * * * * 1327868 ATTTTAATGAAGATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAGTCATCAATATTATTTACA 781 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCATCAATATCATTTACA 1327933 CCAATAAGGAGAACGTGTTTATACTATCTAATCACAAAAT 846 CCAATAAGGAGAACGTGTTTATACTATCTAATCACAAAAT * * 1327973 AATTTGTGGGTAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGAGATATCGTAATGAGAAG 1 AATTTATGGGTAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGAGATATCCTAATGAGAAG * * * * 1328038 ACTATGTTTATGGTGCCTAATCTAGAAAAAAATGGGGGATTAGTATGAGTATTTATGTTTGTTTT 66 ACTATGTTTATGGTGCCTAATCTAGAAAAAAAT-AGGGATTACTAAGAGTATTTATGTTTGTCTT * ** * * * 1328103 ATTTAAGAATCAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTTTTGCAACACTGA 130 ATTTAAGAAACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTACAACACCGA * * * * * 1328168 AGCGTCAATGCCATGTATGCTAATGAATGGAAAGT-GTTTGGCTTCCTAATCTTGACAAGAATGG 195 AGCATCAATGCCATGTATCCTAATCAATGGAAAGTAGTTTGGCTTCCCAATCTTGAAAAGAATGG ** ** * 1328232 AGACTGTTATGAGAAATGATGCTTGTCTTATTTAAGGGAGGAACTTTCATTTT-ACGAAAAATAA 260 AGACTGTTACAAGAAACAATGCTTGTCTTATTT-A---AGGAACTTTCATTTTAAAG-AAAATAA * * * 1328296 GGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATA-ACACTTATCCTAATGAAGAGAATG 320 GGCAAAGAAAAAATTTTCAAGCAAAAGAAAATCATCAATAGA-ACTTATCCCAATGAAGAGAATG * 1328360 TGTGTATAGTGCCTAATCACCAAATGAATAATGATCATTACTAGAATCCATGTCTGTCTCATTTG 384 TGTGTATAGTGCCTAATCACCAAATGAATAAAGATCATTACTAGAATCCATGTCTGTCTCATTTG * * * * 1328425 ATGCATGAACTTTAGACTTTACAAAAATTGGTGGGTAAAAAGCCTTTCTTATGAAACCAATGCAT 449 ATGCACGAAC-TTAGACTTTACAAAAAGTGATGGGTAAAAAGCCTTTCTTATGAAACCAAAGCAT * * 1328490 CAATATAAGGTATCCTAATGAGAAGACTATGTTTACGATGCCTAATCC-GAAAAAGAATAGGGAT 513 CAATATAAGGTATCCAAATGAGAAGACTATGTTTACGATGCCTAATCCAG-AAAAGAATAAGGAT ** * * 1328554 TAGTGTGAGTATTCATGTTTATCTTATTTAAGAAACAAACTTTGATTCTA-CCAAAAATAGTGGA 577 TAGTAAGAGTATTCATGTTTATCTTATTTAAGAAACAAACTTTGATTCTATCAAAAAAAAGTGGA * * * 1328618 AAGAAAAGC-TTCTCTTACAACACCAAAGCATCAATGTCATGTATCCTAGGGAAGGAAATGTGTT 642 AAGAAAAGCATT-TCATACAACACCAAAGCATCAATGTCATGTATCCAAAGGAAGGAAATGTGTT * * * * 1328682 TT-GCCTTTCCAATCTTGCAAAGAATGGAGACTATTATGAAAATCGATGCTTGTCTTATTTAAGG 706 TTGGCC-TCCCAATCTTGAAAAGAATGGAGACTATTACGAAAATCGATACTTGTCTTATTTAAGG * * 1328746 GATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAATTTC-ATGCAAAAGAAAATCATCA 770 GATAAACTCTGATTTTAAGGAAAATAGGGCAAAGAAAAG-ATTTCAATGCAAAAGAAAATCATCA 1328810 ATATCATTTA 834 ATATCATTTA 1328820 TCCTAATGAG Statistics Matches: 762, Mismatches: 73, Indels: 20 0.89 0.09 0.02 Matches are distributed among these distances: 885 147 0.19 886 116 0.15 888 8 0.01 889 335 0.44 890 156 0.20 ACGTcount: A:0.38, C:0.13, G:0.18, T:0.30 Consensus pattern (885 bp): AATTTATGGGTAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGAGATATCCTAATGAGAAG ACTATGTTTATGGTGCCTAATCTAGAAAAAAATAGGGATTACTAAGAGTATTTATGTTTGTCTTA TTTAAGAAACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTACAACACCGAA GCATCAATGCCATGTATCCTAATCAATGGAAAGTAGTTTGGCTTCCCAATCTTGAAAAGAATGGA GACTGTTACAAGAAACAATGCTTGTCTTATTTAAGGAACTTTCATTTTAAAGAAAATAAGGCAAA GAAAAAATTTTCAAGCAAAAGAAAATCATCAATAGAACTTATCCCAATGAAGAGAATGTGTGTAT AGTGCCTAATCACCAAATGAATAAAGATCATTACTAGAATCCATGTCTGTCTCATTTGATGCACG AACTTAGACTTTACAAAAAGTGATGGGTAAAAAGCCTTTCTTATGAAACCAAAGCATCAATATAA GGTATCCAAATGAGAAGACTATGTTTACGATGCCTAATCCAGAAAAGAATAAGGATTAGTAAGAG TATTCATGTTTATCTTATTTAAGAAACAAACTTTGATTCTATCAAAAAAAAGTGGAAAGAAAAGC ATTTCATACAACACCAAAGCATCAATGTCATGTATCCAAAGGAAGGAAATGTGTTTTGGCCTCCC AATCTTGAAAAGAATGGAGACTATTACGAAAATCGATACTTGTCTTATTTAAGGGATAAACTCTG ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCATCAATATCATTTACA CCAATAAGGAGAACGTGTTTATACTATCTAATCACAAAAT Found at i:1328879 original size:477 final size:475 Alignment explanation
Indices: 1327973--1329037 Score: 1482 Period size: 477 Copynumber: 2.2 Consensus size: 475 1327963 ATCACAAAAT * ** * * 1327973 AATTTGTGGGTAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGAGATATCGTAATGAGAAG 1 AATTGGTGGGTAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGAGGTATCCTAATGAGAAG * * * * * 1328038 ACTATGTTTATGGTGCCTAATCTAGAAAAA-AATGGGGGATTAGTATGAGTATTTATGTTTGTTT 66 ACTATGTTTATGATGCCTAATC-CGAAAAAGAAT-GGGGATTAGTATGAGTATTCATGTTTATCT * * * * * * ** 1328102 TATTTAAGAATCAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTTTTGCAACACTG 129 TATTTAAGAAACAAACTTTGATTCTACCAAAAATAGTGGAAAGAAAAGCTTCTCTTACAACACCA * * * * 1328167 AAGCGTCAATGCCATGTATGCTAATGAATGGAAAGTGTTTGGCTTCCTAATCTTGACAAGAATGG 194 AAGCATCAATGCCATGTATCCTAAGGAATGGAAAGTGTTTGCCTTCCTAATCTTGACAAGAATGG * * 1328232 AGACTGTTATGAGAAATGATGCTTGTCTTATTTAAGGGAGGAACTTTCATTTTACGAAAAATAAG 259 AGACTATTATGAGAAATGATGCTTGTCTTATTTAAGGGAGGAACTTTCATTTTAAGAAAAATAAG * 1328297 GCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATAACACTTATCCTAATGAAGAGAATGTG 324 GCAAAGAAAAGAATTTCATGCAAAAGAAAATCATCAATAACACTTATCCTAATGAAGAGAATGTG * * * 1328362 TGTATAGTGCCTAATCACCAAATGAATAATGATCATTACTAGAATCCATGTCTGTCTCATTTGAT 389 TGTATAGTGCCTAATCACCAAAGGAATAATGATCATTACTAGAATCCATGTCTGTCTCATTTAAG * 1328427 GCATGAACTTTAGACTTTACAAA 454 GCACGAAC-TTAGACTTTACAAA * * * 1328450 AATTGGTGGGTAAAAAGCCTTTCTTATGAAACCAATGCATCAATATAAGGTATCCTAATGAGAAG 1 AATTGGTGGGTAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGAGGTATCCTAATGAGAAG * * * 1328515 ACTATGTTTACGATGCCTAATCCGAAAAAGAATAGGGATTAGTGTGAGTATTCATGTTTATCTTA 66 ACTATGTTTATGATGCCTAATCCGAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTATCTTA 1328580 TTTAAGAAACAAACTTTGATTCTACCAAAAATAGTGGAAAGAAAAGCTTCTCTTACAACACCAAA 131 TTTAAGAAACAAACTTTGATTCTACCAAAAATAGTGGAAAGAAAAGCTTCTCTTACAACACCAAA * * 1328645 GCATCAATGTCATGTATCCTAGGGAA-GGAAATGTGTTTTGCCTTTCC-AATCTTG-CAAAGAAT 196 GCATCAATGCCATGTATCCTAAGGAATGGAAA-GTG-TTTGCC-TTCCTAATCTTGAC-AAGAAT * * * 1328707 GGAGACTATTATGA-AAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT 257 GGAGACTATTATGAGAAAT-GATGCTTGTCTTATTTAAGGGAGGAACTTTCATTTTAAGAAAAAT * * * * * 1328771 AGGGCAAAGAAAAGAATTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGATT 321 AAGGCAAAGAAAAGAATTTCATGCAAAAGAAAATCATCAATAACACTTATCCTAATGAAGAGAAT * * * * * 1328836 GTGTTTGTAGTGCCTAATCACCAAAGGAATGGA-GATTATTACTAGAATCCATGTTTGTCTCATT 386 GTGTGTATAGTGCCTAATCACCAAAGGAAT-AATGATCATTACTAGAATCCATGTCTGTCTCATT 1328900 TAAGGCACGAACTTAGACTTTACAAA 450 TAAGGCACGAACTTAGACTTTACAAA * * 1328926 AATTGGTGGGTAAAAAGGCTTTCTTGTGAAACCAAAG-ATTCAATATGAGGTATCCTAATTAGAA 1 AATTGGTGGGTAAAAAGCCTTTCTTGTGAAACCAAAGCA-TCAATATGAGGTATCCTAATGAGAA * 1328990 GACTATGTTTATGCTGCGC-AATCCTG-AAAAGAATGGGGATTAGTATGA 65 GACTATGTTTATGATGC-CTAATCC-GAAAAAGAATGGGGATTAGTATGA 1329038 TTCTATCAAA Statistics Matches: 519, Mismatches: 59, Indels: 21 0.87 0.10 0.04 Matches are distributed among these distances: 475 6 0.01 476 230 0.44 477 278 0.54 478 5 0.01 ACGTcount: A:0.36, C:0.13, G:0.19, T:0.31 Consensus pattern (475 bp): AATTGGTGGGTAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGAGGTATCCTAATGAGAAG ACTATGTTTATGATGCCTAATCCGAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTATCTTA TTTAAGAAACAAACTTTGATTCTACCAAAAATAGTGGAAAGAAAAGCTTCTCTTACAACACCAAA GCATCAATGCCATGTATCCTAAGGAATGGAAAGTGTTTGCCTTCCTAATCTTGACAAGAATGGAG ACTATTATGAGAAATGATGCTTGTCTTATTTAAGGGAGGAACTTTCATTTTAAGAAAAATAAGGC AAAGAAAAGAATTTCATGCAAAAGAAAATCATCAATAACACTTATCCTAATGAAGAGAATGTGTG TATAGTGCCTAATCACCAAAGGAATAATGATCATTACTAGAATCCATGTCTGTCTCATTTAAGGC ACGAACTTAGACTTTACAAA Found at i:1334213 original size:42 final size:42 Alignment explanation
Indices: 1334167--1334285 Score: 166 Period size: 42 Copynumber: 2.8 Consensus size: 42 1334157 TTCTTCTCTC * * * * * 1334167 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTTTCCTGTCT 1 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCT 1334209 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCT 1 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCT * * * 1334251 CTCCTCCTATCATCCCTCCTTTCTCTTCTTTCTCT 1 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCT 1334286 TTGAGGGCTA Statistics Matches: 69, Mismatches: 8, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 42 69 1.00 ACGTcount: A:0.09, C:0.45, G:0.02, T:0.45 Consensus pattern (42 bp): CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCT Found at i:1334226 original size:12 final size:11 Alignment explanation
Indices: 1334201--1334275 Score: 59 Period size: 12 Copynumber: 6.8 Consensus size: 11 1334191 CTATTATCTT * 1334201 TCCTGTCTCTCC 1 TCCTATCTC-CC 1334213 TCCTATCATCCC 1 TCCTATC-TCCC 1334225 TCCTATCT--C 1 TCCTATCTCCC * 1334234 TACTATCT--C 1 TCCTATCTCCC 1334243 TCCTATCTCTCC 1 TCCTATCTC-CC 1334255 TCCTATCATCCC 1 TCCTATC-TCCC * 1334267 TCCTTTCTC 1 TCCTATCTC 1334276 TTCTTTCTCT Statistics Matches: 54, Mismatches: 4, Indels: 11 0.78 0.06 0.16 Matches are distributed among these distances: 9 16 0.30 11 3 0.06 12 31 0.57 13 4 0.07 ACGTcount: A:0.11, C:0.47, G:0.01, T:0.41 Consensus pattern (11 bp): TCCTATCTCCC Found at i:1334253 original size:9 final size:9 Alignment explanation
Indices: 1334224--1334255 Score: 55 Period size: 9 Copynumber: 3.6 Consensus size: 9 1334214 CCTATCATCC 1334224 CTCCTATCT 1 CTCCTATCT * 1334233 CTACTATCT 1 CTCCTATCT 1334242 CTCCTATCT 1 CTCCTATCT 1334251 CTCCT 1 CTCCT 1334256 CCTATCATCC Statistics Matches: 21, Mismatches: 2, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 9 21 1.00 ACGTcount: A:0.12, C:0.44, G:0.00, T:0.44 Consensus pattern (9 bp): CTCCTATCT Found at i:1336764 original size:159 final size:158 Alignment explanation
Indices: 1336087--1337247 Score: 418 Period size: 159 Copynumber: 7.3 Consensus size: 158 1336077 TTAGAGGGTA * * * * * 1336087 AAAAGCCTTTCTTCCGAA-ACCAAAGCATCAATATGAGGTATCCTAATGAGAAGACAATGTTTA- 1 AAAAGCTTTTCTTAC-AACACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTAT * * * * * * * 1336150 CGATGCCCAATCC-GAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAAAAA 65 AG-TGCCTAATCCTG-AAAAGAATAGGGATTAGTATAAGTATTTATGTTTGTCTTATTTAAGAGA * *** 1336214 CAAACTTTGACTCTATTAAAAACAATGGAAAG 128 CAAACTTTGATTCTA-TAAAAATGGTGGAAAG * * * * * ** * 1336246 AAATGCTTCTCTTGCAACACCAAAGCATCAATGTCATGTATCGTAGGGAGGGAA-A-TGTGTTT- 1 AAAAGCTTTTCTTACAACACCAAAGCATCAATATCATGTATCCTAATGA--GAAGACTATGTTTA * * * * * * * * * * 1336308 TGGCTTTCC-AATCTTGAAAGGAATAGAGACTA-T-TACGTGAATTGATGCTTCTCTTATTTAAG 64 TAG--TGCCTAATCCTGAAAAGAATAGGGATTAGTATAAGT--ATTTATGTTTGTCTTATTTAAG * ** * ** 1336370 GGATGAACTTTGATTTTA-AGGAAAATAGG-ACAAAG 125 AGACAAACTTTGATTCTATA--AAAAT-GGTGGAAAG * * * * ** * * * * * * 1336405 AAAAGATTTCCATGCAA-AAGAAATTCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTGT 1 AAAAGCTTTTCTTACAACACCAAA-GCATCAATATCATGTATCCTAATGAGAAGACTATGTTTAT * * * * * * * ** * 1336469 AGTGCCAAATCACCG-AATGAAT-GAAGATCATTACT-AGAATCCATGTTTGTCTCATTT--GAG 65 AGTGCCTAATC-CTGAAAAGAATAG-GGATTAGTA-TAAGTATTTATGTTTGTCTTATTTAAGAG * * * * ** 1336529 GCATGAAGTTAGACTT-TACAAAAATTGGTGGGTA- 127 ACA--AACTTTGA-TTCTATAAAAA-TGGTGGAAAG * * * * * 1336563 AAAATCCTTTCTTGCGAA-ACCAAAGCATCAATATGAGGTATCCTAATGAGAAGACTATGTTTAT 1 AAAAGCTTTTCTTAC-AACACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTAT * 1336627 -GCTGCGC-AATCCTGAAAAGAATAGGGATTAGTATAAGTATTTATGTTTGTCTTATTTAAGAAA 65 AG-TGC-CTAATCCTGAAAAGAATAGGGATTAGTATAAGTATTTATGTTTGTCTTATTTAAGAGA 1336690 CAAACTTTGATTCTATCAAAAATGGTGGAAAG 128 CAAACTTTGATTCTAT-AAAAATGGTGGAAAG * * * * * 1336722 AAAAGCTTTTCTTACAACACCAAAGCATCAATGTCATGTATCCTAATGA-AGGGATTGTGTTTTT 1 AAAAGCTTTTCTTACAACACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTATGTTTAT * * * * * * * * * * 1336786 GGTTCCCAATCTTGAAAAGAAT-GGAGACTA-TTTCGAGAATTGT-TGCTTGTCTTATTTATGAG 65 AGTGCCTAATCCTGAAAAGAATAGG-GATTAGTAT-AAGTATT-TATGTTTGTCTTATTTAAGAG ** * * * 1336848 ATGAACTTTGATTTTA-AGGAAAATAGG-GCAAAC 127 ACAAACTTTGATTCTATA--AAAAT-GGTGGAAAG * * * * * ** * * * * * * 1336881 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAGGAATGTGCTTATA 1 AAAAGCTTTTCTTACAACACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATA * * * * * ** 1336946 GTGCCTAATCAC--AAAATGAATTTAGACGATTACTAGAA-TCA---ATGTTTATCTCATTTGTG 66 GTGCCTAATC-CTGAAAA-GAA--TAG-GGATTAGTATAAGT-ATTTATGTTTGTCTTATTTAAG * * * ** 1337005 -GCTCAAGCTTAGACTT-TATAAAAATTGGTGGGTA- 125 AG-ACAAACTTTGA-TTCTATAAAAA-TGGTGGAAAG * * * * * * * 1337039 AATAGCATTTCTTACTAA-ATCAAAGCATCAATATGAGGTATCCTGATGAGAAGACTATGTCTAT 1 AAAAGCTTTTCTTAC-AACACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTAT * * * * * * * 1337103 AGTGCCTAATCTTGAAAAAGTATGGGGATTAGTATGAGTACTCATGTTTGTCTTCTTTAAGAGAC 65 AGTGCCTAATCCTG-AAAAGAATAGGGATTAGTATAAGTATTTATGTTTGTCTTATTTAAGAGAC * 1337168 AAACTTTAATTCTATAAAAAATGGTGGAAAG 129 AAACTTTGATTCTAT-AAAAATGGTGGAAAG * * * * 1337199 AAGAGCTTTTCTTGCAACACCCAAGCATCAATGTCATGTATCCTAATGA 1 AAAAGCTTTTCTTACAACACCAAAGCATCAATATCATGTATCCTAATGA 1337248 ATGGAAAGTG Statistics Matches: 716, Mismatches: 210, Indels: 151 0.66 0.19 0.14 Matches are distributed among these distances: 156 9 0.01 157 18 0.03 158 187 0.26 159 417 0.58 160 71 0.10 161 5 0.01 162 8 0.01 163 1 0.00 ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31 Consensus pattern (158 bp): AAAAGCTTTTCTTACAACACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATA GTGCCTAATCCTGAAAAGAATAGGGATTAGTATAAGTATTTATGTTTGTCTTATTTAAGAGACAA ACTTTGATTCTATAAAAATGGTGGAAAG Found at i:1336797 original size:476 final size:475 Alignment explanation
Indices: 1335902--1337289 Score: 1886 Period size: 476 Copynumber: 2.9 Consensus size: 475 1335892 GTTTTCATCA * * 1335902 ATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAATATTTCTATGCAAACA-AAAATCATCAA 1 ATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAA-AGAAAATCATCAA * ** * 1335966 TATCATTTATCCTAATGAGAAGAATGTGTTTATAGTGCCAAATCACCAAATGGGTGAAAATCATT 65 TATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCAAATCACCAAATGAATGAAGATCATT * * * * * * * * 1336031 AC-----T-CATGTTTGTGTCATTTGAGGCACGAACTTAGGCATTACTAAAATTAGAGGGTAAAA 130 ACTAGAATCCATGTTTGTCTCATTTGAGGCATGAAGTTAGACTTTACAAAAATTGGTGGGTAAAA * * * 1336090 AGCCTTTCTTCCGAAACCAAAGCATCAATATGAGGTATCCTAATGAGAAGACAATGTTTACGATG 195 AGCCTTTCTTACGAAACCAAAGCATCAATATGAGGTATCCTAATGAGAAGACTATGTTTATG-TG * 1336155 CCCAATCC-GAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAAAAACAAAC 259 -CCAATCCTGAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAAACAAAC * * *** * * 1336219 TTTGACTCTATTAAAAACAATGGAAAGAAATGCTTCTCTTGCAACACCAAAGCATCAATGTCATG 323 TTTGATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATG * * * * * * * 1336284 TATCGT-AGGGAGGGAAATGTGTTTTGGCTTTCCAATCTTGAAAGGAATAGAGACTATTACGTGA 388 TATCCTAATGAAGGG-AATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGA * 1336348 ATTGATGCTTCTCTTATTTAAGGG 452 ATTGATGCTTCTCTTATTTAAGAG * * 1336372 ATGAACTTTGATTTTAAGGAAAATAGGACAAAGAAAAGATTTCCATGCAAAAGAAATTCATCAAT 1 ATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAAT * * 1336437 ATCATTTATCCTAATGAGGAGAATGTGTTTGTAGTGCCAAATCACCGAATGAATGAAGATCATTA 66 ATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCAAATCACCAAATGAATGAAGATCATTA 1336502 CTAGAATCCATGTTTGTCTCATTTGAGGCATGAAGTTAGACTTTACAAAAATTGGTGGGTAAAAA 131 CTAGAATCCATGTTTGTCTCATTTGAGGCATGAAGTTAGACTTTACAAAAATTGGTGGGTAAAAA * * 1336567 TCCTTTCTTGCGAAACCAAAGCATCAATATGAGGTATCCTAATGAGAAGACTATGTTTATGCTGC 196 GCCTTTCTTACGAAACCAAAGCATCAATATGAGGTATCCTAATGAGAAGACTATGTTTATG-TGC * * * 1336632 GCAATCCTG-AAAAGAATAGGGATTAGTATAAGTATTTATGTTTGTCTTATTTAAGAAACAAACT 260 -CAATCCTGAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAAACAAACT * * 1336696 TTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACAACACCAAAGCATCAATGTCATGT 324 TTGATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGT * * 1336761 ATCCTAATGAAGGGATTGTGTTTTTGG-TTCCCAATCTTGAAAAGAATGGAGACTATTTCGAGAA 389 ATCCTAATGAAGGGAATGTG-TTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAA * * * 1336825 TTGTTGCTTGTCTTATTTATGAG 453 TTGATGCTTCTCTTATTTAAGAG * 1336848 ATGAACTTTGATTTTAAGGAAAATAGGGCAAACAAAAGATTTCCATGCAAAAGAAAATCATCAAT 1 ATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAAT * * * ** 1336913 ATCATTTATCCTAATGA-GAGGAATGTGCTTATAGTGCCTAATCACAAAATGAATTTAGA-CGAT 66 ATCATTTATCCTAATGAGGA-GAATGTGTTTATAGTGCCAAATCACCAAATGAATGAAGATC-AT * * * * * 1336976 TACTAGAATCAATGTTTATCTCATTTGTGGC-TCAAGCTTAGACTTTATAAAAATTGGTGGGTAA 129 TACTAGAATCCATGTTTGTCTCATTTGAGGCATGAAG-TTAGACTTTACAAAAATTGGTGGGTAA * * * * * * 1337040 ATAGCATTTCTTACTAAATCAAAGCATCAATATGAGGTATCCTGATGAGAAGACTATGTCTATAG 193 AAAGCCTTTCTTACGAAACCAAAGCATCAATATGAGGTATCCTAATGAGAAGACTATGTTTAT-G * * * * * 1337105 TGCCTAATCTTGAAAAAGTATGGGGATTAGTATGAGTACTCATGTTTGTCTTCTTTAAGAGACAA 257 TGCC-AATCCTGAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAAACAA * * * 1337170 ACTTTAATTCTATAAAAAATGGTGGAAAGAAGAGCTTTTCTTGCAACACCCAAGCATCAATGTCA 321 ACTTTGATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCA * * 1337235 TGTATCCTAATGAATGGAAAGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGA 386 TGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGA 1337290 TTACTCATTC Statistics Matches: 813, Mismatches: 87, Indels: 29 0.88 0.09 0.03 Matches are distributed among these distances: 469 1 0.00 470 119 0.15 475 10 0.01 476 519 0.64 477 164 0.20 ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31 Consensus pattern (475 bp): ATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAAT ATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCAAATCACCAAATGAATGAAGATCATTA CTAGAATCCATGTTTGTCTCATTTGAGGCATGAAGTTAGACTTTACAAAAATTGGTGGGTAAAAA GCCTTTCTTACGAAACCAAAGCATCAATATGAGGTATCCTAATGAGAAGACTATGTTTATGTGCC AATCCTGAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAAACAAACTTT GATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTAT CCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATTG ATGCTTCTCTTATTTAAGAG Found at i:1338972 original size:893 final size:894 Alignment explanation
Indices: 1336700--1339077 Score: 3740 Period size: 893 Copynumber: 2.7 Consensus size: 894 1336690 CAAACTTTGA ** * * * 1336700 TTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACAACACCAAAGCATCAATGTCATGTATCC 1 TTCTATCAAAAATGGCAGAAAGAAAAGCCTTTCTTGCAACACCAAGGCATCAATGTCATGTATCC * * 1336765 TAATGAAGGGATTGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTTCGAGAATTGTT 66 TAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATTGTT * * ** 1336830 GCTTGTCTTATTT-ATGAGATGAACTTTGATTTTAAGGAAAATAGGGCAAACAAAAGATTTCCAT 131 GCTTGTCTTATTTAAAG-GATCAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCCAT * * * * 1336894 GCAAAAGAAAATCATCAATATCATTTATCCTAATGA-GAGGAATGTGCTTATAGTGCCTAATCAC 195 GCAAAAGAAAATCATTAATATCATTTATCTTAATGAGGA-GAATGTGTTTATAGTGCCAAATCAC * ** * * 1336958 AAAATGAATTTAGA-CGATTACTAGAATCAATGTTTATCTCATTTGTGGCT-C-AAGCTTAGACT 259 TAAATGAATGAAGATC-ATTACT----T--ATGTTTATGTCATTTGAGG-TACGAA-CTTAGACT * * * * * 1337020 TTA-TAAAAATTGGTGGGTAAATAGCATTTCTTACTAAATCAAAGCATCAATATGAGGTATCCTG 315 TTACT-AAAATTGGAGGGTAAAAAGCATTTCTTGC-AAACCAAAGCATCAATATGAGGTATCCTA * * * * 1337084 ATGAGAAGACTATGTCTATAGTGCCTAATCTTGAAAAAGT-ATGGGGATTAGTATGAGTACTCAT 378 ATGAGAAGACTACGTTTATGGTGCCTAATC-TGAAAAA-TAATGGGGATTAGTATGAGTATTCAT * * * 1337148 GTTTGTCTTCTTTAAGAGACAAACTTTAATTCTATAAAAAATGGTGGAAAGAAGAGCTTTTCTTG 441 GTTTGTCTTATTTAAGAGACAAACTTTAATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTG * 1337213 CAACACCCAAGCATCAATGTCATGTATCCTAATGAATGGAAAGTGTTTTGGCTTCC-CAATCTTG 506 CAACACCCAAGCATCAATGTCATGTATCCTAATGAATGGAAAGTGTTTTGGC-TCCTTAATCTTG * * 1337277 AAAAGAATGGAGATTACTCATTCTTTTCTGGATTAGGCACCATAAACATAGTCTTCTCTTTAGGA 570 AAAAGAATGGAGATTACTCATTCTTTTCAGGATTAGGCACCATAAACACAGTCTTCTCTTTAGGA * 1337342 TACCTCATGTTGATGCTTTGGTTCCATAAGAAAGCCTTTTTACCCAACAATTTTTATAAAGTCTA 635 TACCTCATGTTGATGCTTTGGTTCCACAAGAAAGCCTTTTTACCCAACAATTTTTATAAAGTCTA * 1337407 AGTTCGTGCATCAAATGAAACAGACATTGATTCTAGTAACGATCTTTATTCATTAGGTGATTAGG 700 AGTTCGTGCATCAAATGAAACAGACATGGATTCTAGTAACGATCTTTATTCATTAGGTGATTAGG * * 1337472 CACTATAAACACATTCTCCTCATTAGGATAAATGATATTGTTGATTTTCATTTGCATGGAAATCT 765 CACTATAAACACATTCTCCTCAATAGGATAAATGATATTGTTGATTTTCATTTGCATGCAAATCT * * * * 1337537 TTTCTTTGCCCTATTTTCCTCAAAATCAAAGTTGATCCCCTAAATAAGACAGGCATTGATTTTCG 830 TTTCTTTGCCCTATTTTCCTCAAAATCAAAGTTGATCCCCTAAATAAAACAGGCATCGACTCTCG * * * ** * * * 1337602 TTCTGTCAAAAATGGCAGAAATAAAA-ACTATTCTTGTGACATCGAGGCATCAATGTCATGTTTC 1 TTCTATCAAAAATGGCAGAAAGAAAAGCCT-TTCTTGCAACACCAAGGCATCAATGTCATGTATC * * 1337666 CTAATGAAGGGAATGTGTTTTTGGTTCCTAATCTTGGAAAGAATGGAGACTATTACGAGAATTGT 65 CTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATTGT 1337731 TGCTTGTCTTATTTAAAGGATCAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCCAT 130 TGCTTGTCTTATTTAAAGGATCAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCCAT 1337796 GCAAAAGAAAATCATTAATATCATTTATCTTAATGAGGAGAATGTGTTTATAGTGCCAAATCACT 195 GCAAAAGAAAATCATTAATATCATTTATCTTAATGAGGAGAATGTGTTTATAGTGCCAAATCACT 1337861 AAATGAATGAAGATCATTACTTATGTTTATGTCATTTGAGGTACGAACTTAGACTTTACTAAAAT 260 AAATGAATGAAGATCATTACTTATGTTTATGTCATTTGAGGTACGAACTTAGACTTTACTAAAAT * * 1337926 TGGAGGGTAAAAAGGATTTCTTGGGAAACCAAAGCATCAATATGAGGTATCCTAATGAGAAGACT 325 TGGAGGGTAAAAAGCATTTCTT-GCAAACCAAAGCATCAATATGAGGTATCCTAATGAGAAGACT 1337991 ACGTTTATGGTGCCTAATCTGAAAAATAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTT 389 ACGTTTATGGTGCCTAATCTGAAAAATAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTT 1338056 AAGAGACAAACTTTAATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCCAAGCA 454 AAGAGACAAACTTTAATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCCAAGCA 1338121 TCAATGTCATGTATCCTAATGAATGGAAAGTGTTTTGGCTCCTTAATCTTGAAAAGAATGGAGAT 519 TCAATGTCATGTATCCTAATGAATGGAAAGTGTTTTGGCTCCTTAATCTTGAAAAGAATGGAGAT 1338186 TACTCATTCTTTTCAGGATTAGGCACCATAAACACAGTCTTCTCTTTAGGATACCTCATGTTGAT 584 TACTCATTCTTTTCAGGATTAGGCACCATAAACACAGTCTTCTCTTTAGGATACCTCATGTTGAT ** * 1338251 GCTTTGGTTTTACAAGAAAGGCC-TTTTACCCAACAATTTTTTTAAAGTCTAAGTTCGTGCATCA 649 GCTTTGGTTCCACAAGAAA-GCCTTTTTACCCAACAATTTTTATAAAGTCTAAGTTCGTGCATCA * * 1338315 AATGAAACAGACATGGATTCTAGTAATGATCTTTATTCATTTGGTGATTAGGCACTATAAACACA 713 AATGAAACAGACATGGATTCTAGTAACGATCTTTATTCATTAGGTGATTAGGCACTATAAACACA 1338380 TTCTCCTCAATAGGATAAATGATATTGTTGATTTTCATTTGCATGCAAATCTTTTCTTTGCCCTA 778 TTCTCCTCAATAGGATAAATGATATTGTTGATTTTCATTTGCATGCAAATCTTTTCTTTGCCCTA * * * 1338445 TTTTCCTCAAAATCAAA-TTTATCCCTTAAATAAAATAGGCATCGACTCTCG 843 TTTTCCTCAAAATCAAAGTTGATCCCCTAAATAAAACAGGCATCGACTCTCG 1338496 TTCTATCAAAAATGGCAGAAAGAAAAGCCTTTCTTGCAACACCAAGGCATCAATGTCATGTATCC 1 TTCTATCAAAAATGGCAGAAAGAAAAGCCTTTCTTGCAACACCAAGGCATCAATGTCATGTATCC ** * * 1338561 TAATGAAGGGAATGT-ACTTTGGTTCCCAATCTTGAAAAGAACGGAGACTATTACGGGAATTGTT 66 TAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATTGTT * * * 1338625 GCTCGTCTTATTTAAAGGATCAAGTTTGATTTTAAGGAAAATAGGGTAAGGAAAAGATTTCCATG 131 GCTTGTCTTATTTAAAGGATCAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCCATG * 1338690 CAAAAGAAAAACATTAATATCATTTATCTTAATGAGGAGAATGTGTTTATAGTGCCAAATCACTA 196 CAAAAGAAAATCATTAATATCATTTATCTTAATGAGGAGAATGTGTTTATAGTGCCAAATCACTA 1338755 AATGAATGAAGATCATTACTTATGTTTATGTCATTTGAGGTACGAACTTAGACTTTACTAAAATT 261 AATGAATGAAGATCATTACTTATGTTTATGTCATTTGAGGTACGAACTTAGACTTTACTAAAATT * 1338820 GGAGGGTAAAAAGCATTTCTTGCAACACCAAAGCATCAATATAAGGTATCCTAATGAGAAGACTA 326 GGAGGGTAAAAAGCATTTCTTGCAA-ACCAAAGCATCAATATGAGGTATCCTAATGAGAAGACTA 1338885 CGTTTATGGTGCCTAATCTGAAAAATAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTA 390 CGTTTATGGTGCCTAATCTGAAAAATAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTA * * 1338950 AGAGACAAACTTTAATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCGT 455 AGAGACAAACTTTAATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCCAAGCAT * * * * * * 1339015 TAATGTCATGTATCCAAAGGAAGGGAATGCGTTTTGGCT--TTCCAATCTTGAAAAGAATGGAGA 520 CAATGTCATGTATCCTAATGAATGGAAAGTGTTTTGGCTCCTT--AATCTTGAAAAGAATGGAGA 1339078 CTATTATGAG Statistics Matches: 1369, Mismatches: 92, Indels: 39 0.91 0.06 0.03 Matches are distributed among these distances: 891 2 0.00 892 3 0.00 893 473 0.35 894 100 0.07 895 429 0.31 896 110 0.08 897 3 0.00 898 1 0.00 901 1 0.00 902 242 0.18 903 5 0.00 ACGTcount: A:0.34, C:0.15, G:0.18, T:0.33 Consensus pattern (894 bp): TTCTATCAAAAATGGCAGAAAGAAAAGCCTTTCTTGCAACACCAAGGCATCAATGTCATGTATCC TAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATTGTT GCTTGTCTTATTTAAAGGATCAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCCATG CAAAAGAAAATCATTAATATCATTTATCTTAATGAGGAGAATGTGTTTATAGTGCCAAATCACTA AATGAATGAAGATCATTACTTATGTTTATGTCATTTGAGGTACGAACTTAGACTTTACTAAAATT GGAGGGTAAAAAGCATTTCTTGCAAACCAAAGCATCAATATGAGGTATCCTAATGAGAAGACTAC GTTTATGGTGCCTAATCTGAAAAATAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAA GAGACAAACTTTAATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCCAAGCATC AATGTCATGTATCCTAATGAATGGAAAGTGTTTTGGCTCCTTAATCTTGAAAAGAATGGAGATTA CTCATTCTTTTCAGGATTAGGCACCATAAACACAGTCTTCTCTTTAGGATACCTCATGTTGATGC TTTGGTTCCACAAGAAAGCCTTTTTACCCAACAATTTTTATAAAGTCTAAGTTCGTGCATCAAAT GAAACAGACATGGATTCTAGTAACGATCTTTATTCATTAGGTGATTAGGCACTATAAACACATTC TCCTCAATAGGATAAATGATATTGTTGATTTTCATTTGCATGCAAATCTTTTCTTTGCCCTATTT TCCTCAAAATCAAAGTTGATCCCCTAAATAAAACAGGCATCGACTCTCG Found at i:1340336 original size:470 final size:470 Alignment explanation
Indices: 1338496--1340355 Score: 2174 Period size: 470 Copynumber: 4.0 Consensus size: 470 1338486 TCGACTCTCG ** * * 1338496 TTCTATCAAAAATGGCAGAAAGAAAAGCCTTTCTTGCAACACCAAGGCATCAATGTCATGTATCC 1 TTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTAT-C ** * ** * 1338561 TAATGAAGGGAATGTACTTTGGTTCCCAATCTTGAAAAGAACGGAGACTATTACGGGAATTGTTG 65 TAA-GAAGGGAATGTGTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACAAGAATTGATG * * * * * * * 1338626 CTCGTCTTATTTAAAGGATCAAGTTTGATTTTAAGGAAAATAGGGTAAGGAAAAGATTTCCATGC 129 CTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATA-GGCAAAGAAAAGATTTCCATGG * * * * 1338691 AAAAGAAAAACATTAATATCATTTA-TCTTAATGAGGAGAATGTGTTTATAGTGCCAAATCACTA 193 AAAAGAAAATCATTAATATCATTTATTC-TAAAGAGGAGAATGTGTTTATAGTGCCTAATCACCA * * * * 1338755 AATGAATGAAGATCATTAC----TTATGTTTATGTCATTTGAGGTACGAACTTAGACTTTACTAA 257 AATGAATGAAGATCATTACTAGATTATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAA * 1338816 AATTGGA-GGGTAAAAAGCATTTCTTGCAACACCAAAGCATCAATATAAGGTATCCTAATGAGAA 322 AATT-GATGGGTAAAAAGCATTTCTTGCAAAACCAAAGCATCAATATAAGGTATCCTAATGAGAA ** ** * 1338880 GACTACGTTTATGGTGCCTAATCTGAAAAATAATGGGGATTAGTATGAGTATTCATGTTTGTCTT 386 GACTATATTTATGGTGCCTAATCCAAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTT * * 1338945 ATTTAAGAGACAAACTTTAA 451 ATTTAAAAGACAAACTTTGA * * 1338965 TTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCGTTAATGTCATGTATCC 1 TTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTAT-C * * * ** * 1339030 AAAGGAAGGGAATGCGTTTTGGCTTTCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCGAT 65 TAA-GAAGGGAATGTGTTTTGG-TTCCCAATCTTGAAAAGAATGGAGACTATTACAAGAATTGAT * * * 1339095 GCTTGTCATATTTAAGGGATGAACTTTGATTTTAATGAAAATAGGGCAAAGAAAAGATTTGCATG 128 GCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATA-GGCAAAGAAAAGATTTCCATG * * * * 1339160 GAAAAGAAAATCATTAATATCATTTA-TCCAAATGGGGAGATTGTGTTTGTAGTGCCTAATCACC 192 GAAAAGAAAATCATTAATATCATTTATTCTAAA-GAGGAGAATGTGTTTATAGTGCCTAATCACC * * * * 1339224 AAAGGAATGGAGATTATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC 256 AAATGAATGAAGATCATTACTAG-AT-TATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC * * * * *** * 1339289 AGAAATTGGTGGGTAAAATGCCTTTCTTGTGGAACCAAAGCATCAATATGAGGTATCCTAATGAG 319 AAAAATTGATGGGTAAAAAGCATTTCTTGCAAAACCAAAGCATCAATATAAGGTATCCTAATGAG * * * * * 1339354 AAGACTATATTTATAGTGCCTAATCCAGAAAGGAATGGAGATTAGTATGAGTATTTATGTTTGTC 384 AAGACTATATTTATGGTGCCTAATCCAAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC 1339419 TTATTTAAGAA-ACAAACTTTGA 449 TTATTTAA-AAGACAAACTTTGA * * * * * * * * * 1339441 TTCTTTCAAAAATAGTGGATAGAAAAGCTTTTCATGCGATACTAATGCATCAAGGTCATGTATCC 1 TTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTAT-C * 1339506 TAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAAGAATGGAGACTATTACAAGAATTGA 65 TAA-GAAGGGAATGTG-TTTTGGTTCCCAATCTTG-AAAAGAATGGAGACTATTACAAGAATTGA * * * * 1339571 TACTTGCCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGTGCAAAGAAAAGATTTCAAT 127 TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAG-GCAAAGAAAAGATTTCCAT * * * * * * * 1339636 GCAAAAAGAAAATCATTAATATCTTTTATACTTATGAGAAAAATGTGTTTATAGTGCCTAATCAC 191 G-GAAAAGAAAATCATTAATATCATTTATTCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCAC * * * ** * 1339701 AAAATGAATGAAGACCATTATTAGA--A----T-T-TC---T-A-GCTTGAACTTAGACTTTATA 255 CAAATGAATGAAGATCATTACTAGATTATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA * * * * * * * * * 1339753 AAAGTTGGTGGGTGAATAGCCTTTCTTACGAAACCAAAGCATCAATATAAGGTATCTTAAAGAGA 320 AAAATTGATGGGTAAAAAGCATTTCTTGCAAAACCAAAGCATCAATATAAGGTATCCTAATGAGA ** ** 1339818 AGACTATATTTATGGTGCCTAATCCTGAAAATTATGGGGATTAGTATGAGTATTCATGTTTGTCT 385 AGACTATATTTATGGTGCCTAATCCAAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCT 1339883 TATTTAAAAGACAAACTTTGA 450 TATTTAAAAGACAAACTTTGA * 1339904 TTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTAT-T 1 TTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCT * 1339968 -A-AAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATTGAGACTATTACAAGAATTGATGC 66 AAGAAGGGAATGTGTTTTGG-TTCCCAATCTTGAAAAGAATGGAGACTATTACAAGAATTGATGC * * 1340031 TTGAT-TTATTTAATGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAAAATTT-CATG 130 TTG-TCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT-AGGCAAAG-AAAAGATTTCCATG * * * * 1340094 GAAAA-TAAATCATCAATATCATTTATTGTAAAGAGGAGAATGTGTTTATAGTGCTTAATCACCA 192 GAAAAGAAAATCATTAATATCATTTATTCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCACCA * * * * 1340158 AATGAATAAAGATCATTACTAGAATCTATGTTTGTCTCCTTTGAGGCACGAACTTAAATTTTACA 257 AATGAATGAAGATCATTACTAG-AT-TATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA * * * 1340223 AAAATTGATGGGTAAAAAGCATTTCTTGTAAAACCAAAGCATCAATATGAGGCATCCCT-ATGAG 320 AAAATTGATGGGTAAAAAGCATTTCTTGCAAAACCAAAGCATCAATATAAGGTAT-CCTAATGAG * * * * 1340287 AAGACTATGTTTATGGTGTCTAATCCAAAAAAGAATGGGGATTAGTATGAGTATTTATATTTGTC 384 AAGACTATATTTATGGTGCCTAATCCAAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC 1340352 TTAT 449 TTAT 1340356 GTTAGGATCT Statistics Matches: 1169, Mismatches: 186, Indels: 71 0.82 0.13 0.05 Matches are distributed among these distances: 455 67 0.06 456 5 0.00 457 81 0.07 458 32 0.03 459 1 0.00 460 1 0.00 461 1 0.00 462 2 0.00 463 201 0.17 464 2 0.00 465 3 0.00 468 3 0.00 469 80 0.07 470 287 0.25 471 2 0.00 474 1 0.00 475 2 0.00 476 238 0.20 477 91 0.08 478 67 0.06 479 2 0.00 ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32 Consensus pattern (470 bp): TTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCT AAGAAGGGAATGTGTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACAAGAATTGATGCT TGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGCAAAGAAAAGATTTCCATGGAAA AGAAAATCATTAATATCATTTATTCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCACCAAATG AATGAAGATCATTACTAGATTATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT GATGGGTAAAAAGCATTTCTTGCAAAACCAAAGCATCAATATAAGGTATCCTAATGAGAAGACTA TATTTATGGTGCCTAATCCAAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTA AAAGACAAACTTTGA Found at i:1340767 original size:13 final size:13 Alignment explanation
Indices: 1340749--1340774 Score: 52 Period size: 13 Copynumber: 2.0 Consensus size: 13 1340739 ACACCAAAGT 1340749 ATGTATCGATACA 1 ATGTATCGATACA 1340762 ATGTATCGATACA 1 ATGTATCGATACA 1340775 CAAAAAATTG Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 13 1.00 ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31 Consensus pattern (13 bp): ATGTATCGATACA Found at i:1340772 original size:33 final size:33 Alignment explanation
Indices: 1340730--1340794 Score: 96 Period size: 33 Copynumber: 2.0 Consensus size: 33 1340720 TAGCCAAACT * * 1340730 TGTATCGATACAC-CAAAGTATGTATCGATACAA 1 TGTATCGATACACAAAAAAT-TGTATCGATACAA 1340763 TGTATCGATACACAAAAAATTGTATCGATACA 1 TGTATCGATACACAAAAAATTGTATCGATACA 1340795 TTGGCTTGTA Statistics Matches: 29, Mismatches: 2, Indels: 2 0.88 0.06 0.06 Matches are distributed among these distances: 33 25 0.86 34 4 0.14 ACGTcount: A:0.42, C:0.17, G:0.14, T:0.28 Consensus pattern (33 bp): TGTATCGATACACAAAAAATTGTATCGATACAA Found at i:1346626 original size:42 final size:42 Alignment explanation
Indices: 1346562--1346690 Score: 179 Period size: 42 Copynumber: 3.1 Consensus size: 42 1346552 TCTTCCATCT * * * * 1346562 TCTTCTCTC-CTCCTCTTGTCATCCCTCCTCTCTCTATTATC 1 TCTTCTGTCTCTCCTCCTATCATCCCTCCTCTCTCTACTATC * 1346603 TCTTCTGTCTCTCCTCCTATCATCCCTCCTATCTCTACTATC 1 TCTTCTGTCTCTCCTCCTATCATCCCTCCTCTCTCTACTATC * * * 1346645 TCTCCTGTCTCTCCTCCTATCATCCCTCCTCTCTCTTCTTTC 1 TCTTCTGTCTCTCCTCCTATCATCCCTCCTCTCTCTACTATC 1346687 TCTT 1 TCTT 1346691 TGAGGGCTAC Statistics Matches: 77, Mismatches: 10, Indels: 1 0.88 0.11 0.01 Matches are distributed among these distances: 41 8 0.10 42 69 0.90 ACGTcount: A:0.08, C:0.44, G:0.02, T:0.46 Consensus pattern (42 bp): TCTTCTGTCTCTCCTCCTATCATCCCTCCTCTCTCTACTATC Found at i:1351096 original size:13 final size:13 Alignment explanation
Indices: 1351078--1351103 Score: 52 Period size: 13 Copynumber: 2.0 Consensus size: 13 1351068 ACACCAAAGT 1351078 ATGTATCGATACA 1 ATGTATCGATACA 1351091 ATGTATCGATACA 1 ATGTATCGATACA 1351104 CAAAAAATTG Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 13 1.00 ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31 Consensus pattern (13 bp): ATGTATCGATACA Found at i:1353248 original size:42 final size:42 Alignment explanation
Indices: 1353186--1353314 Score: 179 Period size: 42 Copynumber: 3.1 Consensus size: 42 1353176 GTAGCCCTCA * * 1353186 AAGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAG 1 AAGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAG * * 1353228 GAGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAG 1 AAGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAG * * * * 1353270 AAGAGATAATAGAGAGAGGAGGGATGACAAGAGGAG-GAGAG 1 AAGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAG 1353311 AAGA 1 AAGA 1353315 AGATGGAAGA Statistics Matches: 77, Mismatches: 10, Indels: 1 0.88 0.11 0.01 Matches are distributed among these distances: 41 8 0.10 42 69 0.90 ACGTcount: A:0.46, C:0.02, G:0.44, T:0.08 Consensus pattern (42 bp): AAGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAG Found at i:1361472 original size:13 final size:13 Alignment explanation
Indices: 1361454--1361479 Score: 52 Period size: 13 Copynumber: 2.0 Consensus size: 13 1361444 ACATTTTACT 1361454 TTGTATCGATACA 1 TTGTATCGATACA 1361467 TTGTATCGATACA 1 TTGTATCGATACA 1361480 GGGGGATTAT Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 13 1.00 ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38 Consensus pattern (13 bp): TTGTATCGATACA Found at i:1364061 original size:20 final size:20 Alignment explanation
Indices: 1364035--1364087 Score: 72 Period size: 20 Copynumber: 2.6 Consensus size: 20 1364025 GTAGCCAAAC * * 1364035 TTGTATCGATACAC-CAAAG 1 TTGTATCGATACACAAAAAA 1364054 TATGTATCGATACACAAAAAA 1 T-TGTATCGATACACAAAAAA 1364075 TTGTATCGATACA 1 TTGTATCGATACA 1364088 TTCACACGGG Statistics Matches: 30, Mismatches: 2, Indels: 3 0.86 0.06 0.09 Matches are distributed among these distances: 19 1 0.03 20 25 0.83 21 4 0.13 ACGTcount: A:0.42, C:0.17, G:0.13, T:0.28 Consensus pattern (20 bp): TTGTATCGATACACAAAAAA Found at i:1365641 original size:278 final size:276 Alignment explanation
Indices: 1365105--1365652 Score: 780 Period size: 278 Copynumber: 2.0 Consensus size: 276 1365095 AACTTAAAGT * 1365105 GCCTTTCTTACGAAACCAAAACATCAATATAAGGTATCATAATGAGAAGACTATGTTTATGGTGC 1 GCCTTTCTTACGAAACCAAAACATCAATAAAAGGTATCATAATGAGAAGACTATGTTTATGGTGC ** * * * * 1365170 CTAATTTGGAAAAGAATGGGGATTAGTACGAGTATTTATGTTTGTCTTATTTCAGAGACATTTTA 66 CTAAACTGGAAAAGAATGGGGAATAGTACGAGTATTTATGTTTGTCTTATTTAAGAAACACTTTA * * * 1365235 ATTTTATCGAAAATGGTCGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATTAATGTTAGGTATT 131 ATTCTATCAAAAATGGTCGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATTAATGTCAGGTATT ** * * 1365300 CTAATGAAGGGAATGTGTTTTGGCTTTCCAATCTTGAAATGAATGGAGACTATTACAAGAATCGA 196 CTAACAAAGGGAATGCGTTTTGGCTTTCCAATCTTGAAAAGAATGGAGACTATTACAAGAATCGA * 1365365 TGCTTGTTTTATATAA 261 TGCTTATTTTATATAA * * 1365381 GCCTTTCTTACGAAACCAAAGCATCAATAAAAGGTATCATAATGAGAAGGCTATGTTTATGGTGC 1 GCCTTTCTTACGAAACCAAAACATCAATAAAAGGTATCATAATGAGAAGACTATGTTTATGGTGC * * * 1365446 CTAAACTGGAAAAGAATGGGGAATAGTATGGGT-TTT-CGTTTTGGTCTTATTTAAGAAACAAAC 66 CTAAACTGGAAAAGAATGGGGAATAGTACGAGTATTTATG-TTT-GTCTTATTTAAGAAAC--AC * * * 1365509 TTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATTAATGTCATG 127 TTTAATTCTATCAAAAATGGTCGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATTAATGTCAGG * * * 1365574 T-TTCCTAACAAAGGGAATGCGTTTTGGC-TTCTTAATCTTGAAAAGAATGGAGACTGTTACCAG 192 TATT-CTAACAAAGGGAATGCGTTTTGGCTTTC-CAATCTTGAAAAGAATGGAGACTATTACAAG 1365637 AATCGATGCTTATTTT 255 AATCGATGCTTATTTT 1365653 TTTTAAGAGA Statistics Matches: 240, Mismatches: 26, Indels: 10 0.87 0.09 0.04 Matches are distributed among these distances: 274 1 0.00 275 6 0.03 276 104 0.43 277 5 0.02 278 124 0.52 ACGTcount: A:0.34, C:0.13, G:0.20, T:0.33 Consensus pattern (276 bp): GCCTTTCTTACGAAACCAAAACATCAATAAAAGGTATCATAATGAGAAGACTATGTTTATGGTGC CTAAACTGGAAAAGAATGGGGAATAGTACGAGTATTTATGTTTGTCTTATTTAAGAAACACTTTA ATTCTATCAAAAATGGTCGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATTAATGTCAGGTATT CTAACAAAGGGAATGCGTTTTGGCTTTCCAATCTTGAAAAGAATGGAGACTATTACAAGAATCGA TGCTTATTTTATATAA Found at i:1366271 original size:476 final size:473 Alignment explanation
Indices: 1365379--1366638 Score: 1559 Period size: 476 Copynumber: 2.7 Consensus size: 473 1365369 TGTTTTATAT * * 1365379 AAGCCTTTCTTACGAAACCAAAGCATCAATAAAAGGTATC-ATAATGAGAAGGCTATGTTTATGG 1 AAGCCTTTCTTATGAAACCAAAGCATCAATAAAAGGTATCTAT-ATGAGAAGACTATGTTTATGG * * * * * 1365443 TGCCTAA-ACTGGAAAAGAATGGGGAATAGTATGGGTTTTCGTTTTGGTCTTATTTAAGAAACAA 65 TGCCTAATTC-GGAAAAGAATGGGGATTAGTATGAGTATTCATTTT-GTCTTATTTAAGAAACAA * * * 1365507 ACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATTAATGTCA 128 ACTTTGATTCTATCAAAAACGATGCAAAGAAAAGCTTTTCTTGCAACACCAAAGCATTAATGTCA * ** ** * 1365572 TGTTTCCTAACAAAGGGAATGCGTTTTGGCTTCTTAATCTTGAAAAGAATGGAGACTGTTACCAG 193 TGTATCCTAATGAAGGGAATGCGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAG * * * * * 1365637 AATCGATGCTTATTTTTTTTAAGAGATGAACTTTGATTTTAAGGAAATTAGGGAAAATAAAAAAT 258 AAT-GTTGCTTGTTTTATTTAAGGGATGAACTTTGATTTTAAGGAAA-TAGGGCAAATAAAAAAT * * 1365702 TTCTATTCAAAAGAAAATCATCAATATCATTTATAGTAAAGAAGAGAATGTGTTTAAAGTGCCTA 321 TTCTATGCAAAAGAAAATCATCAATATCATTTATAGTAAAGAAGAGAATATGTTTAAAGTGCCTA * 1365767 ATCACCAAATGAATGAAAATCATTACTAGAATCCAT-TTT-TATCTTAGTTGAGGCACGAACTTA 386 ATCACCAAATGAATGAAAATCATTACTAGAATCCATGTTTGAATC--AGTTGAGGCACGAACTTA * * 1365830 GACTTTACAAAAATTGGAAGGTAA-A 449 GACTTGACAAAAATT-GAAGGGAAGA * * 1365855 AAGCCTTTCTTATGAAACCAAAGCATCAATACAAGGCATCTATATGAGAAGACTATGTTTATGGT 1 AAGCCTTTCTTATGAAACCAAAGCATCAATAAAAGGTATCTATATGAGAAGACTATGTTTATGGT * * 1365920 ACCTAATTCGGAAAAGAATGGGGATTAATATGAGTATTCATGTTTGTCTTATTTAAGAAACAAAC 66 GCCTAATTCGGAAAAGAATGGGGATTAGTATGAGTATTCAT-TTTGTCTTATTTAAGAAACAAAC * * 1365985 TTTGATTCTATCAAAAACGATGCAAAGAAAAGCTTTTCTTGTAACACCAAAGCATCAATGTCATG 130 TTTGATTCTATCAAAAACGATGCAAAGAAAAGCTTTTCTTGCAACACCAAAGCATTAATGTCATG * * * 1366050 TGTCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATAGAGACTGTTACGAGAA 195 TATCCTAATGAAGGGAATGCGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAG-A * * * 1366115 ATGTTGCTTGTTTTATTTAAGGGATAAACTTTGTTTTTAAGGCAAATAGGGCAAATAAAAGATTT 259 ATGTTGCTTGTTTTATTTAAGGGATGAACTTTGATTTTAAGG-AAATAGGGCAAATAAAAAATTT * * * * * 1366180 -TCATGGAAAAGAAAATCATCAATATCGTTTATCA-TAAAGAGGAGATTATGTTTATAGTGCCTA 323 CT-ATGCAAAAGAAAATCATCAATATCATTTAT-AGTAAAGAAGAGAATATGTTTAAAGTGCCTA * * * 1366243 ATCACCAAATGAATGAAGATCATTACTAGAATCTATGTTTGAATCATTTGAGGCACGAACTTAGA 386 ATCACCAAATGAATGAAAATCATTACTAGAATCCATGTTTGAATCAGTTGAGGCACGAACTTAGA * * * 1366308 CTTGATAAAAATTTATGGGAAGA 451 CTTGACAAAAATTGAAGGGAAGA *** * * 1366331 AAGCCTTTC-T-TGCAAAGCCAAAGCATCAATATGTGGTATCCTA-AAGGGAAGACTATGTTTAT 1 AAGCCTTTCTTATG-AAA-CCAAAGCATCAATAAAAGGTAT-CTATATGAGAAGACTATGTTTAT ** * * * * 1366393 GGTGCCTAATTCAAAAAAGATTGGGGATTAGTATGAGTATTCATATTTTTTTTATTTAAGAGACA 63 GGTGCCTAATTCGGAAAAGAATGGGGATTAGTATGAGTATTCAT-TTTGTCTTATTTAAGAAACA * * * 1366458 AACTTTGATT-T-T----ATCGAT-CGAAA-AAAAGCTTTTCTTGCAACACTAAAGCATTACTGT 127 AACTTTGATTCTATCAAAAACGATGC-AAAGAAAAGCTTTTCTTGCAACACCAAAGCATTAATGT * * * * 1366515 CAGGTATTCTAATGAAGGGAATGCGTTTTGGCTTCCCAAACTTGAAATGAATGGAGACTGTTACG 191 CATGTATCCTAATGAAGGGAATGCGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACG * * * * * 1366580 AGAATCTATGCTCGTTTTAGTT-ATGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAT 256 AGAATGT-TGCTTGTTTTATTTAAGGGATGAACTTTGATTTTAAGG-AAATAGGGCAAAT 1366639 TAAGATTATG Statistics Matches: 686, Mismatches: 83, Indels: 38 0.85 0.10 0.05 Matches are distributed among these distances: 468 36 0.05 469 103 0.15 470 8 0.01 474 3 0.00 475 11 0.02 476 503 0.73 477 19 0.03 478 3 0.00 ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32 Consensus pattern (473 bp): AAGCCTTTCTTATGAAACCAAAGCATCAATAAAAGGTATCTATATGAGAAGACTATGTTTATGGT GCCTAATTCGGAAAAGAATGGGGATTAGTATGAGTATTCATTTTGTCTTATTTAAGAAACAAACT TTGATTCTATCAAAAACGATGCAAAGAAAAGCTTTTCTTGCAACACCAAAGCATTAATGTCATGT ATCCTAATGAAGGGAATGCGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAAT GTTGCTTGTTTTATTTAAGGGATGAACTTTGATTTTAAGGAAATAGGGCAAATAAAAAATTTCTA TGCAAAAGAAAATCATCAATATCATTTATAGTAAAGAAGAGAATATGTTTAAAGTGCCTAATCAC CAAATGAATGAAAATCATTACTAGAATCCATGTTTGAATCAGTTGAGGCACGAACTTAGACTTGA CAAAAATTGAAGGGAAGA Found at i:1368196 original size:476 final size:474 Alignment explanation
Indices: 1366647--1370255 Score: 4009 Period size: 476 Copynumber: 7.7 Consensus size: 474 1366637 ATTAAGATTA * * * * 1366647 TGTTTATAGCGCCTAATCACCAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCCTTTG 1 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG * * * * * * *** * 1366712 AGGCATGAACTTAAATTTTTCAAAAATTGATGGGTAAAAAGCATTTCTTGTAAAACTAAAGCATC 66 AGGCACGAACTTAGA-CTTTCTAAAATTGGTGGGTAAAAAGCCTTTCTTACGAAACCAAAGCATC * * * * 1366777 GATATAAGGCATCCCT-ATGAGAAGACTATGTTTATGGTGTCT-AATCTGGAAAAGAAT-GGGAT 130 AATATGAGGTAT-CCTAATGAGAAGACTATGTTTATGGTGCCTAAAT-TGGAAAAGAATGGGGAT * * * * * 1366839 TAGTATGAGTATTTATGTTTATCATATTTAAGAAACAAACTTTGATTCTATCAAAAATGATGGAA 193 TAGTATGAGTATTCATGTTTGTCTTATTTAAGAAACAAACTTTGATTCTATCAAAAACGGTGGAA * * * * 1366904 AGAAAAGCTTTTATTGCAACACCAAAGCATTAATGTCATGCATCTTAATGAAGGGAATGTGTTTT 258 AGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTT * * * * ** 1366969 TTTGTTCCCAATCTTGAATAAGAATGGAGAATATTA-TAGGAATTAATGCTTG-CTTATTTAAAG 322 TTGGTTCCCAATCTTGAA-AAGAATGGAGACTGTTACGA-GAATCGATGCTTGTCTTATTT-AAG * * * * 1367032 GTTGAACTTTGATTTTTAA-GAAAGTAGGGCAAAGAAAAG-TTTTCAATGCCAAACAAAATCATC 384 GATGAACTTTGA-TTTTAAGGAAAATAGGGCAAAGAAAAGATTTT-AATGCAAAAGAAAATCATC * * * * 1367095 AATACCGTTTATCCTAATGAGAAGAAGG 447 AATATCATTTATCCTAATGAGGAGAATG * * * 1367123 TGTTTATAGTGCTTAAACACAAAATGAATGAAGACCATTACTAGAAT-CATTGTTTGTCTCATTT 1 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA-TGTTTGTCTCATTT * * * * 1367187 GAGGCACAAACTTAGACTTTATAAAAATTGGTGGGTAAATAGCCTTTCTTACAAAACCAAAGCAT 65 GAGGCACGAACTTAGACTTTCT-AAAATTGGTGGGTAAAAAGCCTTTCTTACGAAACCAAAGCAT * * * * * * 1367252 CAACATAAGGTATCCTAATGAAAAGACTATGTTTATGGTGCCT-AATCCGGAAAAGAATGAGGAA 129 CAATATGAGGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAAT-TGGAAAAGAATGGGGAT * ** * * * * 1367316 TAGTATGAGTTTTTGTTTTTGTCTTATTTAAGAAACAAACATTGATTCTATAAAAAATGGTGGAA 193 TAGTATGAGTATTCATGTTTGTCTTATTTAAGAAACAAACTTTGATTCTATCAAAAACGGTGGAA * * * * 1367381 AGAAAAGCTTTTCTTGCAACACCAAAGCATTAATGTCATGTTTCCTAATGAAGGGATTGCG-TTT 258 AGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTT * * * ** * 1367445 TGGCTTCTCAATCTTGAAAAGAATGGTGACTGTTACCAGAATCGATGCTCAT-TTTTTTAAGAGA 323 TGG-TTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAG-GA * * 1367509 TGAACTTTGATTTTAAGGAAAATAGGGCAAATAAAAGATTTTCATGCAAAAGAAAATCATCAATA 386 TGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTAATGCAAAAGAAAATCATCAATA * * 1367574 TCATTTATCGTAAAGAGGAGAATG 451 TCATTTATCCTAATGAGGAGAATG * * * * * 1367598 TGTTTATAGTGCCTAATCACCAAATGAATGAAAATCATTGCTAGAATCCAGGTTTGTCTTATTTG 1 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG * * * * * * 1367663 GGGCTCGAACTTAGACTTTACAAAAATTAGTGGGTAAAAAACCTTTCTTATGAAACCAAAGCATC 66 AGGCACGAACTTAGACTTT-CTAAAATTGGTGGGTAAAAAGCCTTTCTTACGAAACCAAAGCATC * * * * * * 1367728 AAAATGAGGCATCCTTACGAGAAGACTATGTCTATGCTGCCTAAATTGGAAAAGAATGGGGATTA 130 AATATGAGGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAATTGGAAAAGAATGGGGATTA * * * 1367793 ATATGAGTATTCATATTTGTCTTATTTAAGAAACAAACTTTGATTCTACCAAAAACGGTGGAAAG 195 GTATGAGTATTCATGTTTGTCTTATTTAAGAAACAAACTTTGATTCTATCAAAAACGGTGGAAAG * * ** 1367858 AAAAGCTTTTCTTGCAACACCAAAGCATGAATGTCATGTATCCTAATAAAGTAAATGTG-TTTTG 260 AAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTG * * ** 1367922 GCTTCCCAATCAT-AAAAGGAATGGAGACTGTTGCGAGAATCGATGCTTAACTTATTTAAGTGAT 325 G-TTCCCAATCTTGAAAA-GAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAG-GAT * * * 1367986 GGACTTTGATTTTAGGGAAAATAGGGCAAAGAAAAGATTTTAATGCAAAATAAAATCATCAATAT 387 GAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTAATGCAAAAGAAAATCATCAATAT * 1368051 CATTTATCCTAAAGAGGAGAATG 452 CATTTATCCTAATGAGGAGAATG * * * * 1368074 TGTTTATAATGCCTAATCACCAAAGGAATGAAGATCATTACTAGAATCCATGTTTGTCTCTTTTG 1 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG * * * 1368139 AGGTACGAACTTAGACTTTCCTAAAATTGGTGGGTAAAACGCCTTTCTTGCGAAACCAAAGCATC 66 AGGCACGAACTTAGACTTT-CTAAAATTGGTGGGTAAAAAGCCTTTCTTACGAAACCAAAGCATC * * * 1368204 AATATGAGGTATCCTAAAGA-ATAGACTATGTTTATGGTGCCTAATTTAGAAAAGAATGGGGATT 130 AATATGAGGTATCCTAATGAGA-AGACTATGTTTATGGTGCCTAAATTGGAAAAGAATGGGGATT * * * * 1368268 AGTATGAGTATTCATGTTTGTCTTATTTAAGAAACAAACTTTGGTTTTA-CAAAAAATGGTAGAA 194 AGTATGAGTATTCATGTTTGTCTTATTTAAGAAACAAACTTTGATTCTATC-AAAAACGGTGGAA ** * * 1368332 AGAAAAGCTTTTCTTGTGACACCAAAGCATAAATCTCATGTATCCTAA-GAAAGGGAATGTGTTT 258 AGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATG-AAGGGAATGTGTTT * * * * * 1368396 TTAGTTCTCAATCCTGAAAAAGAATGGCGAC-GATTACAAGAATCGATGCTTGTCTTATTTAAGG 322 TTGGTTCCCAATCTTG-AAAAGAATGGAGACTG-TTACGAGAATCGATGCTTGTCTTATTTAA-G * ** * * * 1368460 GATG-ACTTTGATTTTAAGAAAAATAGACCAAAGAAAAGATTTTAGTGTAAAAGAAAATAATCAA 384 GATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTAATGCAAAAGAAAATCATCAA * 1368524 TATCATTTATCCTAATGAGGAGAATA 449 TATCATTTATCCTAATGAGGAGAATG * * * 1368550 TGTTTACAGTGCCTAATCACAAAATGATTGAAGA-CGGTTACTAGAATCCATGTTTG-CGTCATT 1 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATC-ATTACTAGAATCCATGTTTGTC-TCATT * * * * 1368613 CGAGGCACGAACTTAGACTTTATAAAATTTGGTGGGTAAAAAGCCTTTTTTACGGAACCAAAGCA 64 TGAGGCACGAACTTAGACTTTCTAAAA-TTGGTGGGTAAAAAGCCTTTCTTACGAAACCAAAGCA * * * ** 1368678 TCAATTTGAGGTATCCTAATGAGAAGACTATGTTTATGCTACGGC-ATCCTT--AAAAGAATGGG 128 TCAATATGAGGTATCCTAATGAGAAGACTATGTTTATGGT--GCCTA-AATTGGAAAAGAATGGG * 1368740 GATT-GATATGAGTATTCACGTTTTGTCTTATTTAAGAAACAAACTTTGATTCTATCAAAAACGG 190 GATTAG-TATGAGTATTCATG-TTTGTCTTATTTAAGAAACAAACTTTGATTCTATCAAAAACGG * * 1368804 TGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGT 253 TGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGT * * * * * * 1368869 GTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTATTTCGAGAATTGTTGCTTGTCTTATTTAT 318 GTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAA * * 1368934 GGCAAGAACTTTGATTTTAAGG---A-A---C--------------AATGCTAAAGAAAATCATC 383 GG-ATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTAATGCAAAAGAAAATCATC * * * 1368978 AATATC-TCTTATACTTATGAGAAGAATG 447 AATATCAT-TTATCCTAATGAGGAGAATG * * * 1369006 TGTTTATAGTGCCTAATCACAAAATGAATGAAGACCATTACTAGAAT---T-TGTGGC-C---TG 1 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG * * 1369063 A---AC--A--TAGACTTTATAAAAGTTGGTGGGTAAATAGCCTTTCTTACGAAACCAAAGCATC 66 AGGCACGAACTTAGACTTTCTAAAA-TTGGTGGGTAAAAAGCCTTTCTTACGAAACCAAAGCATC * * * * * ** 1369121 AATATAAGGTATCTTAAGGAGAAGACTATATTTATGGTGCCT-AATCTTGAAAATTATGGGGATT 130 AATATGAGGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAAT-TGGAAAAGAATGGGGATT * * * 1369185 AGTTTGAGTATTCATGTTTGTCTTATTTAAAAAACAAACTTTGATTCTATCAAAAACGGTGAAAA 194 AGTATGAGTATTCATGTTTGTCTTATTTAAGAAACAAACTTTGATTCTATCAAAAACGGTGGAAA * 1369250 GAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGTGAATGTG-TTTT 259 GAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTT * * * ** * * 1369314 GGCTTCCCAATCTTTAAAAGAAAGGAGACTATTGTGAAAATCGATGCTTGGCTTATTTAAGTGAT 324 GG-TTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAG-GAT * * * * * * 1369379 GAACTTTGATTTTAGGGAAAATAAGGCAAAG-AAATATTTCAATG-AAGAATAAAATTATCAATA 387 GAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTAATGCAA-AAGAAAATCATCAATA * * 1369442 TCATTTACCCTAAAGAGGAGAATG 451 TCATTTATCCTAATGAGGAGAATG * * * * * * 1369466 TGTTTATAGTGCCAAATCACCAAAGGAATGAAGATCATTATTGGAATCCATGTTTGTCTCTTTTG 1 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG * * * * * * 1369531 AGGTACAAACCTAGACTTTCCTAAAATTGGTGCGTAAAACGCCTTTCTTGCGAAACCAAAGCATC 66 AGGCACGAACTTAGACTTT-CTAAAATTGGTGGGTAAAAAGCCTTTCTTACGAAACCAAAGCATC * * * * 1369596 AATATGAGGTATCCTAAAGA-ATAGACTATGTTTATGGTGCCTAATTTAGAAAAGAACGGGGATT 130 AATATGAGGTATCCTAATGAGA-AGACTATGTTTATGGTGCCTAAATTGGAAAAGAATGGGGATT * * * 1369660 AGTATGAGTATTCATGTTTGTCTTATTTAAGAAACAAACTTTGATTTTA-CAAAAAATGGTAGAA 194 AGTATGAGTATTCATGTTTGTCTTATTTAAGAAACAAACTTTGATTCTATC-AAAAACGGTGGAA ** * * 1369724 AGAAAAGCTTTTCTTGTGACACCAAAGCATAAATCTCATGTATCCTAA-GAAAGGGAATGTGTTT 258 AGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATG-AAGGGAATGTGTTT * * * 1369788 TTGGTTCTCAAT-TCTGAAAAAGAATGGCGAC-GATTACAAGAATCGATGCTTGTCTTATTTAAG 322 TTGGTTCCCAATCT-TG-AAAAGAATGGAGACTG-TTACGAGAATCGATGCTTGTCTTATTTAA- * * * * 1369851 GGATG-ACTTTGATTTTAAGGAAAATAGAGCAAAGAAAAGATTTCAGTGTAAAAGAAAATCATCA 383 GGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTAATGCAAAAGAAAATCATCA * 1369915 ATATCATTTATCCTAATGAGGAGAATA 448 ATATCATTTATCCTAATGAGGAGAATG * * * * * 1369942 TGTTTACAGTGCCTAATCACAAAATGATTGAAGACCGTTACTAGAATCCATGTTTG-CGTCATTC 1 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC-TCATTT * * * * * 1370006 GAGGCACGAGCTTAGACTTACGAAAAATTGGTGGGTAAAAAGGCTTTTTTACGAAACCAAAGCAT 65 GAGGCACGAACTTAGACTTTC-TAAAATTGGTGGGTAAAAAGCCTTTCTTACGAAACCAAAGCAT * ** ** 1370071 CAATATGAGGTATCCTAATGAGAAGACTATGTTTATGGTGCCGAACGCT-GAAAAGAATAAGGAT 129 CAATATGAGGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAA-ATTGGAAAAGAATGGGGAT * * * * 1370135 TAGTATAAGTATTCATGATTATCTTATTTAA-AAGACAAACTTTGATTCTATTAAAAACGGTGGA 193 TAGTATGAGTATTCATGTTTGTCTTATTTAAGAA-ACAAACTTTGATTCTATCAAAAACGGTGGA * * * 1370199 AAGAAAAGCTTTTCTTACGACACTAAAGCATCAATGTCATGTATCCTAATGAAGGGA 257 AAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGA 1370256 GACAGTTACA Statistics Matches: 2660, Mismatches: 370, Indels: 206 0.82 0.11 0.06 Matches are distributed among these distances: 438 1 0.00 439 9 0.00 440 169 0.06 441 108 0.04 442 1 0.00 443 2 0.00 444 1 0.00 445 2 0.00 447 1 0.00 448 2 0.00 451 1 0.00 452 3 0.00 453 2 0.00 455 1 0.00 456 79 0.03 457 1 0.00 459 1 0.00 460 76 0.03 461 1 0.00 463 1 0.00 464 4 0.00 465 1 0.00 468 3 0.00 470 1 0.00 471 2 0.00 473 2 0.00 474 18 0.01 475 669 0.25 476 1194 0.45 477 293 0.11 478 11 0.00 ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31 Consensus pattern (474 bp): TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG AGGCACGAACTTAGACTTTCTAAAATTGGTGGGTAAAAAGCCTTTCTTACGAAACCAAAGCATCA ATATGAGGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAATTGGAAAAGAATGGGGATTAG TATGAGTATTCATGTTTGTCTTATTTAAGAAACAAACTTTGATTCTATCAAAAACGGTGGAAAGA AAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGG TTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGATGAAC TTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTAATGCAAAAGAAAATCATCAATATCATT TATCCTAATGAGGAGAATG Found at i:1370298 original size:916 final size:888 Alignment explanation
Indices: 1368429--1370425 Score: 2086 Period size: 916 Copynumber: 2.2 Consensus size: 888 1368419 ATGGCGACGA * * * * * 1368429 TTACAAGAATCGATGCTTGTCTTATTTAAGGGATG-ACTTTGATTTTAAGAAAAAT-AGACCAAA 1 TTACAAGAATCGAGGCTCGTTTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAG-GCAAA * * * * * * 1368492 GAAAAGATTTTAGTGTAAAAGAAAATAATCAATATCATTTATCCTAATGAGGAGAATATGTTTAC 65 GAAAAGATTTCAATGCAAAAGAAAATAATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTAT * * 1368557 AGTGCCTAATCACAAAATGATTGAAGA-CGGTTACTAGAATCCATGTTTGCGTCATTCGAGGCAC 130 AGTGCCTAATCACAAAATGAATGAAGATC-ATTACTAGAATCCATGTTTGCGTCATTCGAGGCAC * * * * * * 1368621 GAACTTAGACTTTATAAAATTTGGTGGGTAAAAAGCCTTTTTTACGGAACCAAAGCATCAATTTG 194 AAACCTAGACTTTATAAAATTTGGTGCGTAAAAAGCCTTTCTTACGAAACCAAAGCATCAATATG * * * * 1368686 AGGTATCCTAATGAGAAGACTATGTTTATGCTACGGCATCCTTAAAAGAATGGGGATTGATATGA 259 AGGTATCCTAAAGAGAAGACTATGTTTATGCTACCGAAT-CTTAAAAGAACGGGGATTGATATGA * 1368751 GTATTCACGTTTTGTCTTATTTAAGAAACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAG 323 GTATTCACGTTTTGTCTTATTTAAGAAACAAACTTTGATTCTATCAAAAACGGTAGAAAGAAAAG * * 1368816 CTTTTCTTACGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCC 388 CTTTTCTTACGACACCAAAGCATAAATCTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCC * * * * * * 1368881 CAATCATGAAAAGAATGGAGACTATTTCGAGAATTGTTGCTTGTCTTATTTATGGCAAGAACTTT 453 CAATCATGAAAAGAATGGAGACGATTACAAGAATCGATGCTTGTCTTATTTAAGGCAAGAACTTT * * 1368946 GATTTTAAGGAACAATGCTAAAGAAAATCATCAATATCTCTTATACTTATGAGAAGAATGTGTTT 518 GATTTTAAGGAACAATGCTAAAGAAAATCATCAATATCTCTTATACTAATGAGAAGAATATGTTT * 1369011 ATAGTGCCTAATCACAAAATGAATGAAGACCATTACTAGAATTTGTGGCCTGAACATAGACTTTA 583 ACAGTGCCTAATCACAAAATGAATGAAGACCATTACTAGAATTTGTGGCCTGAACATAGACTTTA * * * * 1369076 TAAAAGTTGGTGGGTAAATAGCCTTTCTTACGAAACCAAAGCATCAATATAAGGTATCTTAAGGA 648 GAAAAATTGGTGGGTAAAAAGCCTTTCTTACGAAACCAAAGCATCAATATAAGGTATCCTAAGGA * * ** ** * * * * 1369141 GAAGACTATATTTATGGTGCCTAATCTTGAAAATTATGGGGATTAGTTTGAGTATTCATGTTTGT 713 GAAGACTATATTTATGGTGCCGAATCCTGAAAAGAATAAGGATTAGTATAAGTATTCATGATTAT * 1369206 CTTATTTAAAAAACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCAACAC 778 CTTATTTAAAAAACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTACAACAC * * * 1369271 CAAAGCATCAATGTCATGTATCCTAATGAAGTGAATGTGTTTTGGCTTCCCAATCT 843 CAAAGCATCAATGTCATGTATCCTAATGAAG-G-A-GTG---TAG---CACAA-CG * * * * * 1369327 TTAAAAGAAAGGAGACTATTGTGAAAATCGATGCTTGGCTTATTTAAGTGATGAACTTTGATTTT 1 TTACAAG--A--A-TCGA--G-G---CTC---G-TT---TTATTTAAGGGATGAACTTTGATTTT * * * * * 1369392 AGGGAAAATAAGGCAAAG-AAATATTTCAATG-AAGAATAAAATTATCAATATCATTTACCCTAA 48 AAGGAAAATAAGGCAAAGAAAAGATTTCAATGCAA-AAGAAAATAATCAATATCATTTATCCTAA * * * * * 1369455 AGAGGAGAATGTGTTTATAGTGCCAAATCACCAAAGGAATGAAGATCATTATTGGAATCCATGTT 112 AGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT * * * * * * 1369520 TGTC-TCTTTTGAGGTACAAACCTAGACTTTCCTAAAA-TTGGTGCGTAAAACGCCTTTCTTGCG 177 TG-CGTCATTCGAGGCACAAACCTAGACTTT-ATAAAATTTGGTGCGTAAAAAGCCTTTCTTACG * * * 1369583 AAACCAAAGCATCAATATGAGGTATCCTAAAGA-ATAGACTATGTTTATGGTGCCTAAT-TTAGA 240 AAACCAAAGCATCAATATGAGGTATCCTAAAGAGA-AGACTATGTTTATGCTACCGAATCTT--A * * 1369646 AAAGAACGGGGATT-AGTATGAGTATTCATG-TTTGTCTTATTTAAGAAACAAACTTTGATTTTA 302 AAAGAACGGGGATTGA-TATGAGTATTCACGTTTTGTCTTATTTAAGAAACAAACTTTGATTCTA * ** 1369709 -CAAAAAATGGTAGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATAAATCTCATGTATCCTAA- 366 TC-AAAAACGGTAGAAAGAAAAGCTTTTCTTACGACACCAAAGCATAAATCTCATGTATCCTAAT * * 1369772 GAAAGGGAATGTGTTTTTGGTTCTCAATTC-TGAAAAAGAATGGCGACGATTACAAGAATCGATG 430 G-AAGGGAATGTGTTTTTGGTTCCCAA-TCATG-AAAAGAATGGAGACGATTACAAGAATCGATG * * * 1369836 CTTGTCTTATTTAAGGGATG-ACTTTGATTTTAAGGAAAATAGAGCAAAGAAAAGATTTCAGTGT 492 CTTGTCTTATTTAAGGCAAGAACTTTGATTTTAAGG-----A-A-C-------A-A--T--G-CT * * 1369900 AAAAGAAAATCATCAATATCAT-TTATCCTAATGAGGAGAATATGTTTACAGTGCCTAATCACAA 537 -AAAGAAAATCATCAATATC-TCTTATACTAATGAGAAGAATATGTTTACAGTGCCTAATCACAA * * * * 1369964 AATGATTGAAGACCGTTACTAGAATCCATGTTTGCGTCATTCGAGGCACGAGCTTAGAC-TTACG 600 AATGAATGAAGACCATTACTAGAAT---T-TGTG-G-C-CT-GA---AC-A---TAGACTTTA-G * * * * 1370028 AAAAATTGGTGGGTAAAAAGGCTTTTTTACGAAACCAAAGCATCAATATGAGGTATCCTAATGAG 649 AAAAATTGGTGGGTAAAAAGCCTTTCTTACGAAACCAAAGCATCAATATAAGGTATCCTAAGGAG * 1370093 AAGACTATGTTTATGGTGCCGAA-CGCTGAAAAGAATAAGGATTAGTATAAGTATTCATGATTAT 714 AAGACTATATTTATGGTGCCGAATC-CTGAAAAGAATAAGGATTAGTATAAGTATTCATGATTAT * * * * 1370157 CTTATTTAAAAGACAAACTTTGATTCTATTAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACAC 778 CTTATTTAAAAAACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTACAACAC * 1370222 TAAAGCATCAATGTCATGTATCCTAATGAA-G-G-G-AG-AC-A-G 843 CAAAGCATCAATGTCATGTATCCTAATGAAGGAGTGTAGCACAACG * * * 1370261 TTACAAGAATCGAGGCTCGTTTTATTTGAGGGATGAACTTTGATTTTAATGAAAATAGGGCAAAG 1 TTACAAGAATCGAGGCTCGTTTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAG * 1370326 AAAAGATTTCAAAGCAAAAGAAAATCAA-CAATATCATTTATCC-AAACGAGGAGAATGTGTTTA 66 AAAAGATTTCAATGCAAAAGAAAAT-AATCAATATCATTTATCCTAAA-GAGGAGAATGTGTTTA * 1370389 TAGTGCCTAATCTCAAAATGAATGAAGATCATTACTA 129 TAGTGCCTAATCACAAAATGAATGAAGATCATTACTA 1370426 ATCTAATATC Statistics Matches: 902, Mismatches: 122, Indels: 131 0.78 0.11 0.11 Matches are distributed among these distances: 898 6 0.01 900 1 0.00 902 1 0.00 903 2 0.00 906 1 0.00 909 1 0.00 912 1 0.00 913 1 0.00 914 4 0.00 915 132 0.15 916 308 0.34 917 109 0.12 918 5 0.01 919 2 0.00 920 2 0.00 921 1 0.00 922 1 0.00 923 2 0.00 926 1 0.00 927 1 0.00 929 3 0.00 930 2 0.00 932 2 0.00 934 7 0.01 935 1 0.00 936 80 0.09 937 2 0.00 939 1 0.00 940 3 0.00 941 2 0.00 942 1 0.00 943 1 0.00 944 2 0.00 945 1 0.00 946 1 0.00 947 2 0.00 948 1 0.00 949 1 0.00 950 4 0.00 951 203 0.23 ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31 Consensus pattern (888 bp): TTACAAGAATCGAGGCTCGTTTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAG AAAAGATTTCAATGCAAAAGAAAATAATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATA GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGCGTCATTCGAGGCACAA ACCTAGACTTTATAAAATTTGGTGCGTAAAAAGCCTTTCTTACGAAACCAAAGCATCAATATGAG GTATCCTAAAGAGAAGACTATGTTTATGCTACCGAATCTTAAAAGAACGGGGATTGATATGAGTA TTCACGTTTTGTCTTATTTAAGAAACAAACTTTGATTCTATCAAAAACGGTAGAAAGAAAAGCTT TTCTTACGACACCAAAGCATAAATCTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAA TCATGAAAAGAATGGAGACGATTACAAGAATCGATGCTTGTCTTATTTAAGGCAAGAACTTTGAT TTTAAGGAACAATGCTAAAGAAAATCATCAATATCTCTTATACTAATGAGAAGAATATGTTTACA GTGCCTAATCACAAAATGAATGAAGACCATTACTAGAATTTGTGGCCTGAACATAGACTTTAGAA AAATTGGTGGGTAAAAAGCCTTTCTTACGAAACCAAAGCATCAATATAAGGTATCCTAAGGAGAA GACTATATTTATGGTGCCGAATCCTGAAAAGAATAAGGATTAGTATAAGTATTCATGATTATCTT ATTTAAAAAACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTACAACACCAA AGCATCAATGTCATGTATCCTAATGAAGGAGTGTAGCACAACG Found at i:1381464 original size:59 final size:58 Alignment explanation
Indices: 1381356--1381526 Score: 333 Period size: 59 Copynumber: 2.9 Consensus size: 58 1381346 ACGAACATTG 1381356 ATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCCTGCAACACCAAAGCATCAAAGTC 1 ATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCCTGCAACACCAAAGCATCAAAGTC 1381414 ATTCTATCAAAAACAGTGGAAAGAAAAAGCTTTTCCTGCAACACCAAAGCATCAAAGTC 1 ATTCTATCAAAAACAGTGGAAAG-AAAAGCTTTTCCTGCAACACCAAAGCATCAAAGTC 1381473 ATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCCTGCAACACCAAAGCATCAA 1 ATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCCTGCAACACCAAAGCATCAA 1381527 TTTCATGTAA Statistics Matches: 112, Mismatches: 0, Indels: 2 0.98 0.00 0.02 Matches are distributed among these distances: 58 54 0.48 59 58 0.52 ACGTcount: A:0.44, C:0.22, G:0.13, T:0.20 Consensus pattern (58 bp): ATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCCTGCAACACCAAAGCATCAAAGTC Found at i:1382362 original size:475 final size:474 Alignment explanation
Indices: 1381473--1382519 Score: 1469 Period size: 475 Copynumber: 2.2 Consensus size: 474 1381463 CATCAAAGTC * * * * * 1381473 ATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCCTGCAACACCAAAGCATCAATTTCATGTAAC 1 ATTCTATCAAAAACTGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC * * * * * * * 1381538 CTAATGAAGAGAAAGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGA 66 CTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAAAAGGGAGAATATTACGAGAATCGA * * * * 1381603 TGCTTGTCTTATTTAATGTATGAATTTTAATTTAAAAGAAACTAGGGAAATAAAAGATTCCATGC 131 TGCTTGTCTTATTTAATGGATGAATTTGAATTTAAAAGAAACTAGGGAAAAAAAAAATTCCATGC * * 1381668 AAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAAAGTGTTTTTAGTGCCCAATCACCAA 196 AAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAAAGTGTTTATAATGCCCAATCACCAA * * * 1381733 ATAAATGAAGATCATTCCAAGAATCCATGTTTGTCTCATTTGAGATATGAACTTAAACTTTACAA 261 ATAAATGAAGATCATTACAAGAATCCATGTTTGTCTCATTTGAGACATGAACTTAAACTCTACAA 1381798 AAATTAGTCAAAAAAATGCCTTTCTTGAAAACCCAAAACATCAGTATCATGTATCCTAATGAGAA 326 AAATTAGTCAAAAAAATGCCTTTCTTGAAAACCCAAAACATCAGTATCATGTATCCTAATGAGAA ** * * * * * 1381863 GCCCATATTTGTGATGCCTAATCTTGAAAAGATTAGGGATTACTATGACTGTTCTTGTTTGTATA 391 AACCATATTTATGATACCTAATCTTGAAAAGAATAGGGATTACTATGACTATTCTTATTTGTATA * 1381928 ATTTAAGAGATAAACTTTG 456 ATTTAAGAGACAAACTTTG 1381947 ATTCTATCAAAAACTGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC 1 ATTCTATCAAAAACTGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC * * 1382012 CTAATGAAGGGATTGTGTTTTTGGTTCCCAATCTT-AAAAAAAGGGAGAATATTACGAGCATCGA 66 CTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAAAAGGGAGAATATTACGAGAATCGA * * * 1382076 TGCTTGTCTTATTT-ATGGGATGAACTTTGATTTTATGAA-AAA-TTGGGTAAAGAAAAAAATTT 131 TGCTTGTCTTATTTAAT-GGATGAA-TTTGAATTTA-AAAGAAACTAGGG-AAA-AAAAAAA-TT * * * * * * * 1382138 ACC-TGCAAAA-AACATCCTCAATGTCGTTTATCTTAATAAGGAGAATGTGTTTATAATGCCTAA 190 -CCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAAAGTGTTTATAATGCCCAA * * * * * * 1382201 TCACCAAATGAATGTAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCATGAACTTAGAC 254 TCACCAAATAAATGAAGATCATTACAAGAATCCATGTTTGTCTCATTTGAGACATGAACTTAAAC * * 1382266 TCTACAAAAATTAGTCAAAAAAATGCCTTTCTTGCAAACCCAAAACATCAGTATCGTGTATCCTA 319 TCTACAAAAATTAGTCAAAAAAATGCCTTTCTTGAAAACCCAAAACATCAGTATCATGTATCCTA * * * * 1382331 ATGAGAAAACTATGTTTATGATACCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCTTAT 384 ATGAGAAAACCATATTTATGATACCTAATCTTGAAAAGAATAGGGATTACTATGACTATTCTTAT 1382396 TTGTATAATTTAAGAGACAAACTTTG 449 TTGTATAATTTAAGAGACAAACTTTG * * 1382422 ATTCTATAAAAAACTGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAGTGTCATGTATC 1 ATTCTATCAAAAACTGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC * 1382487 CTAATGAAAGGAATGTG-TTTTGGCTTCCCAATC 66 CTAATGAAGGGAATGTGTTTTTGG-TTCCCAATC 1382520 CTAATGAGGA Statistics Matches: 508, Mismatches: 57, Indels: 15 0.88 0.10 0.03 Matches are distributed among these distances: 472 2 0.00 473 47 0.09 474 112 0.22 475 336 0.66 476 9 0.02 477 2 0.00 ACGTcount: A:0.37, C:0.15, G:0.16, T:0.32 Consensus pattern (474 bp): ATTCTATCAAAAACTGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC CTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAAAAGGGAGAATATTACGAGAATCGA TGCTTGTCTTATTTAATGGATGAATTTGAATTTAAAAGAAACTAGGGAAAAAAAAAATTCCATGC AAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAAAGTGTTTATAATGCCCAATCACCAA ATAAATGAAGATCATTACAAGAATCCATGTTTGTCTCATTTGAGACATGAACTTAAACTCTACAA AAATTAGTCAAAAAAATGCCTTTCTTGAAAACCCAAAACATCAGTATCATGTATCCTAATGAGAA AACCATATTTATGATACCTAATCTTGAAAAGAATAGGGATTACTATGACTATTCTTATTTGTATA ATTTAAGAGACAAACTTTG Found at i:1382372 original size:158 final size:158 Alignment explanation
Indices: 1381736--1382372 Score: 338 Period size: 158 Copynumber: 4.0 Consensus size: 158 1381726 TCACCAAATA * * * * * * * 1381736 AATGAAGATCATTCCAAGAATCCATGTTTGTCTCATTTGAGATATGAACTTAAACTTTA-CAAAA 1 AATGTAGATCATTACTAGAATCCATGTTTGTCTTATTTGAG-GATGAACTTAGACTCTATCAAAA * * * 1381800 ATTAGTCAAA-AAAATGCCTTTCTTGAAAACCCAAAACATCAGTATCATGTATCCTAATGAGAAG 65 ATTAGTCAAAGAAAA-GCCTTTCTTGCAAACCCAAAACATCAATATCATGTATCCTAATGAGAAA * * * * 1381864 CCCATATTTGTGATGCCTAATCTTGAAAAG 129 ACTATGTTTATGATGCCTAATCTTGAAAAG ** * * * * * * * * * 1381894 -AT-TAG-GGATTACTATGACTGTTCTTGTTTGTATAATTTAAGAGATAAACTTTGATTCTATCA 1 AATGTAGATCATTACTA-GA--ATCCATGTTTGTCTTATTTGAG-GATGAACTTAGACTCTATCA * * * * * * 1381956 AAAACT-GTGGAAAGAAAAGCTTTTCTTGC-GACACCAAAGCATCAATGTCATGTATCCTAATGA 62 AAAATTAGT-CAAAGAAAAGCCTTTCTTGCAAAC-CCAAAACATCAATATCATGTATCCTAATGA ** * * * * * * * 1382019 -AGGGATTGTGTTTTTGGTTCCCAATCTT-AAAAA 125 GA-AAACTATGTTTATGATGCCTAATCTTGAAAAG * * * * * * * * * * 1382052 AAGGGAGAAT-ATTACGAGCATCGATGCTTGTCTTATTT-ATGGGATGAACTTTGATTTTATGAA 1 AATGTAG-ATCATTACTAGAATCCATGTTTGTCTTATTTGA--GGATGAACTTAGACTCTATCAA * *** * * * * * * * 1382115 AAATTGGGT-AAAGAAAAAAATTTACCTGCAAA---AAACATCCTCAATGTCGTTTATCTTAATA 63 AAATT-AGTCAAAGAAAAGCCTTT-CTTGCAAACCCAAA-A-CATCAATATCATGTATCCTAATG * * * *** * 1382176 AGGAGAA-TGTGTTTATAATGCCTAATCACCAAATG 124 A-GAAAACTATGTTTATGATGCCTAATCTTGAAAAG 1382211 AATGTAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCATGAACTTAGACTCTA-CAAAA 1 AATGTAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGG-ATGAACTTAGACTCTATCAAAA * * 1382275 ATTAGTCAAA-AAAATGCCTTTCTTGCAAACCCAAAACATCAGTATCGTGTATCCTAATGAGAAA 65 ATTAGTCAAAGAAAA-GCCTTTCTTGCAAACCCAAAACATCAATATCATGTATCCTAATGAGAAA * 1382339 ACTATGTTTATGATACCTAATCTTGAAAAG 129 ACTATGTTTATGATGCCTAATCTTGAAAAG 1382369 AATG 1 AATG 1382373 GGGATTAGTA Statistics Matches: 345, Mismatches: 102, Indels: 64 0.68 0.20 0.13 Matches are distributed among these distances: 155 5 0.01 156 7 0.02 157 20 0.06 158 176 0.51 159 116 0.34 160 15 0.04 161 6 0.02 ACGTcount: A:0.37, C:0.15, G:0.16, T:0.32 Consensus pattern (158 bp): AATGTAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGATGAACTTAGACTCTATCAAAAA TTAGTCAAAGAAAAGCCTTTCTTGCAAACCCAAAACATCAATATCATGTATCCTAATGAGAAAAC TATGTTTATGATGCCTAATCTTGAAAAG Found at i:1382506 original size:159 final size:157 Alignment explanation
Indices: 1381830--1382506 Score: 384 Period size: 158 Copynumber: 4.3 Consensus size: 157 1381820 TCTTGAAAAC * ** * * 1381830 CCAAAACATCAGTATCATGTATCCTAATGAGAAGCCCA--TATTTGTGATGCCTAATCTTGAAAA 1 CCAAAACATCAGTGTCATGTATCCTAATGA-AAG-GAATGTGTTTATGATGCCTAATCTTGAAAA * * * * * * 1381893 GATTAGGGATTACTATGACTGTTCTTGTTTGTATAATTTAAGAGATAAACTTTGATTCTATCAAA 64 GAATGGGGATTATTATGAC-ATTCTTATTTGTATAATTTAAGAGACAAACTTTGATTCTATCAAA 1381958 AACTGTGGAAAGAAAAGCTTTTCTTGCGACA 128 AACTGTGGAAAGAAAAGCTTTTCTTGC-ACA * * * * * * * * 1381989 CCAAAGCATCAATGTCATGTATCCTAATGAAGGGATTGTGTTTTTGGTTCCCAATCTT-AAAA-A 1 CCAAAACATCAGTGTCATGTATCCTAATGAAAGGAATGTGTTTATGATGCCTAATCTTGAAAAGA * * * * * * * * ** * * 1382052 AAGGGAGAATATTACGAGCA-TC-GATGCTTGTCTTATTTATGGGATGAACTTTGATTTTATGAA 66 ATGGG-GATTATTATGA-CATTCTTAT--TTGTATAATTTAAGAGACAAACTTTGATTCTATCAA * ** * * 1382115 AAATTG-GGTAAAGAAAAAAATTTACCTGCA-A 127 AAACTGTGG-AAAG-AAAAGCTTTTCTTGCACA * * * * * * *** 1382146 --AAAACATCCTCAATGTCGTTTATCTTAAT-AAGGAGAATGTGTTTATAATGCCTAATCACCAA 1 CCAAAACA---TCAGTGTCATGTATCCTAATGAAAG-GAATGTGTTTATGATGCCTAATCTTGAA * ** * * * * * * * * * 1382208 ATGAATGTAGATCATTACTAGA-ATCCATGTTTGTCTTATTT--GAGGCATGAACTTAGACTCTA 62 AAGAATGGGGATTATTA-T-GACATTCTTATTTGTATAATTTAAGAGACA--AACTTTGATTCTA * * * * 1382270 -CAAAAATTAGT-CAAA-AAAATGCCTTTCTTGCAAA 123 TCAAAAACT-GTGGAAAGAAAA-GCTTTTCTTGCACA * * * * 1382304 CCCAAAACATCAGTATCGTGTATCCTAATGAGAA--AACTATGTTTATGATACCTAATCTTGAAA 1 -CCAAAACATCAGTGTCATGTATCCTAATGA-AAGGAA-TGTGTTTATGATGCCTAATCTTGAAA * * 1382367 AGAATGGGGATTAGTATGACTATTCTTATTTGTATAATTTAAGAGACAAACTTTGATTCTATAAA 63 AGAATGGGGATTATTATGAC-ATTCTTATTTGTATAATTTAAGAGACAAACTTTGATTCTATCAA 1382432 AAACTGTGGAAAGAAAAGCTTTTCTTGCGACA 127 AAACTGTGGAAAGAAAAGCTTTTCTTGC-ACA * 1382464 CCAAAGCATCAGTGTCATGTATCCTAATGAAAGGAATGTGTTT 1 CCAAAACATCAGTGTCATGTATCCTAATGAAAGGAATGTGTTT 1382507 TGGCTTCCCA Statistics Matches: 376, Mismatches: 102, Indels: 80 0.67 0.18 0.14 Matches are distributed among these distances: 155 5 0.01 156 7 0.02 157 24 0.06 158 174 0.46 159 139 0.37 160 18 0.05 161 9 0.02 ACGTcount: A:0.36, C:0.15, G:0.17, T:0.33 Consensus pattern (157 bp): CCAAAACATCAGTGTCATGTATCCTAATGAAAGGAATGTGTTTATGATGCCTAATCTTGAAAAGA ATGGGGATTATTATGACATTCTTATTTGTATAATTTAAGAGACAAACTTTGATTCTATCAAAAAC TGTGGAAAGAAAAGCTTTTCTTGCACA Found at i:1382765 original size:19 final size:18 Alignment explanation
Indices: 1382741--1382803 Score: 64 Period size: 19 Copynumber: 3.7 Consensus size: 18 1382731 AAACCGTAAC 1382741 TGTATCGATACATAAGTGT 1 TGTATCGATACATAAGT-T 1382760 TGTATCGATAC--AA--- 1 TGTATCGATACATAAGTT 1382773 TGTATCGATACATAAGTTT 1 TGTATCGATACATAAG-TT * 1382792 TGTATCGTTACA 1 TGTATCGATACA 1382804 ATGTATCGCT Statistics Matches: 37, Mismatches: 1, Indels: 12 0.74 0.02 0.24 Matches are distributed among these distances: 13 11 0.30 15 2 0.05 17 2 0.05 19 22 0.59 ACGTcount: A:0.32, C:0.13, G:0.17, T:0.38 Consensus pattern (18 bp): TGTATCGATACATAAGTT Found at i:1382778 original size:13 final size:13 Alignment explanation
Indices: 1382760--1382784 Score: 50 Period size: 13 Copynumber: 1.9 Consensus size: 13 1382750 ACATAAGTGT 1382760 TGTATCGATACAA 1 TGTATCGATACAA 1382773 TGTATCGATACA 1 TGTATCGATACA 1382785 TAAGTTTTGT Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 12 1.00 ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32 Consensus pattern (13 bp): TGTATCGATACAA Found at i:1382782 original size:32 final size:32 Alignment explanation
Indices: 1382741--1382811 Score: 124 Period size: 32 Copynumber: 2.2 Consensus size: 32 1382731 AAACCGTAAC 1382741 TGTATCGATACATAAGTGTTGTATCGATACAA 1 TGTATCGATACATAAGTGTTGTATCGATACAA * * 1382773 TGTATCGATACATAAGTTTTGTATCGTTACAA 1 TGTATCGATACATAAGTGTTGTATCGATACAA 1382805 TGTATCG 1 TGTATCG 1382812 CTACGAAGCT Statistics Matches: 37, Mismatches: 2, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 32 37 1.00 ACGTcount: A:0.31, C:0.13, G:0.18, T:0.38 Consensus pattern (32 bp): TGTATCGATACATAAGTGTTGTATCGATACAA Found at i:1382874 original size:13 final size:13 Alignment explanation
Indices: 1382856--1382883 Score: 56 Period size: 13 Copynumber: 2.2 Consensus size: 13 1382846 ATTACTCAAA 1382856 TGTATCGATACAT 1 TGTATCGATACAT 1382869 TGTATCGATACAT 1 TGTATCGATACAT 1382882 TG 1 TG 1382884 ATCTTTTCTA Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 15 1.00 ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39 Consensus pattern (13 bp): TGTATCGATACAT Found at i:1386969 original size:476 final size:475 Alignment explanation
Indices: 1386029--1394727 Score: 9859 Period size: 476 Copynumber: 18.3 Consensus size: 475 1386019 GTTACGATAA ** * * 1386029 TGCCTAATCATAAAATGAAA-GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGATACGA 1 TGCCTAATCACCAAAT-AAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACATGA * * * * * * * 1386093 GCTTAGACTTTACAAAAATTGGTGAGAAAAAA-GCCTTTATTGCGAAGCCAAAACATCCATATGA 65 ACTTAGACTTTACAAAAATTAGTGA-AAAAAATGCCTTTCTTGCAAACCCAAAACATCAATATCA ** * * * * * * * 1386157 CATATTCTAATGAGAAGACTATGTTTATGGTGCCAAATCCTGAAAAGAATGGGAATTAGTATGAG 129 TGTATCCTAATGAGAAGACCATGTTTATGATGCCTAATCTTGAAAAGAATGGGGATTAGTATGAC * * * 1386222 TATTCTTGTTTGTCTTATTTGAA-AGACAAACTTTGATTTTATCAAAAA-TGCTGGAAAGAAAAG 194 TATTCTTGTTTGTATAATTT-AAGAGACAAACTTTGATTCTATCAAAAACTG-TGGAAAGAAAAG * * * * 1386285 CTATTCTTGCAACACCAAAGCATTAATGTCATGTATCCTAACGAAAGGAATGTGTTTTGGCTTCC 257 CTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCC * * * * * 1386350 CAATCTTGCAATGAATGGAGACTATTACGACAATCGGTGCTTGTGTTTTTTAAGGGATGAACTTT 322 CAATCTTGCAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTT * * * 1386415 GAGTTTAAGGAAAATAGGGC-AAGGAAAAGATTTTCATGCAAAAGAAAATCATCAATA-CTATTT 387 GATTTTAA-GAAAATAGGGCAAAGAAAAAGA-TTTCCTGCAAAAGAAAATCATCAATATC-ATTT * 1386478 ATCCTAATAAGGAGAAAGTGTCTT-TAG 449 ATCCTAATGAGGAGAAAGTGT-TTATAG * 1386505 TG-CTCAATCACCAAATAAATGAAGATCATTACTAGAATCGATGTTTGTCTCATTTGAGACATGA 1 TGCCT-AATCACCAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACATGA * * * 1386569 ACATAGACTTTACAAAAATTAGTCAAAAAAATGCCTTTCTTGCAAACCCAAAACATCAGTATCAT 65 ACTTAGACTTTACAAAAATTAGTGAAAAAAATGCCTTTCTTGCAAACCCAAAACATCAATATCAT * * * * * 1386634 GTATCCTAATGAGAAGCCCATGTTTGTGATGCCTAATCTTGAAATGAATAGGGATTACTATGACT 130 GTATCCTAATGAGAAGACCATGTTTATGATGCCTAATCTTGAAAAGAATGGGGATTAGTATGACT * * ** * 1386699 GTTCTTGTTTATATAATTTAAGAGGTAAACTTTGATTCTATCAAAAACTGTGAAAAGAAAAGCTT 195 ATTCTTGTTTGTATAATTTAAGAGACAAACTTTGATTCTATCAAAAACTGTGGAAAGAAAAGCTT * * * * 1386764 TTTTTGGCCACACCAAAGCATCAATGTCATGTATCTTAATGAAGGGATTGTGTTTTTGG-TTCCC 260 TTCTT-GCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTGGCTTCCC * * * * 1386828 AATCTTG-AAAGAATGGAGAATGTTACGAGCATCGATGCTTGTCTTATTTATGGGATGAACTTTG 323 AATCTTGCAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTG * * * * * * 1386892 ATTTTATAGAAAATTGGGTAAAGAAAAAAATTTACCTGCAAAA-AAAATCCTCAATGTCGTTTAT 388 ATTTTA-AGAAAATAGGGCAAAGAAAAAGATTT-CCTGCAAAAGAAAATCATCAATATCATTTAT * * * 1386956 CTTAATGAGGAGAATGTGTTTATAA 451 CCTAATGAGGAGAAAGTGTTTATAG * * * * 1386981 TGCCTAATCACCAAATAAATGTAGATCATTACTAGAATCCATGTTTATCTTATTTGAGGCATGAA 1 TGCCTAATCACCAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACATGAA * * * * * 1387046 CTTAGACTCTATAAAAATTAGTCAAAAAAATGCCTTTCTTGCAAACCGAAAACATCAATATCGTG 66 CTTAGACTTTACAAAAATTAGTGAAAAAAATGCCTTTCTTGCAAACCCAAAACATCAATATCATG * * * 1387111 TATCCTAATGAGAAAACTATGTTTATGATACCTAATCTTGAAAAGAATGGGGATTAGTATGACTA 131 TATCCTAATGAGAAGACCATGTTTATGATGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTA * * 1387176 TTCTTATTTATATAATTTAAGAGACAAACTTTGATTCTATCAAAAACTGTGGAAAGAAAAGCTTT 196 TTCTTGTTTGTATAATTTAAGAGACAAACTTTGATTCTATCAAAAACTGTGGAAAGAAAAGCTTT * * * * 1387241 TCTTGCGACACCAAAGCATTAGTGTCATGTATCCTAATGAAAGGAATGTGTTTTGGCTTCCCAAT 261 TCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAAT * * * * * 1387306 CCTGCAATGAATGGAGACTATTACGAGAATCGATGCTTGTGTTTTTTAAGGGATGAACTTTGAGT 326 CTTGCAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATT * * ** * 1387371 TTAAGGAAAATAGGGC-AAGGAGAAGATTTTTATGCAAAAGAAAATCATCAATATCATTTATCTT 391 TTAA-GAAAATAGGGCAAAGAAAAAGA-TTTCCTGCAAAAGAAAATCATCAATATCATTTATCCT * * 1387435 AATAAGGAGAAAGTGTTTTTAG 454 AATGAGGAGAAAGTGTTTATAG * 1387457 TGCCCAATCACCAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACATGAA 1 TGCCTAATCACCAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACATGAA * * * * * 1387522 CTTAAACTTCACAAAAATTACTGAAAAAAATGCCTTTCTTCCAAACCCAAAACATCAGTATCATG 66 CTTAGACTTTACAAAAATTAGTGAAAAAAATGCCTTTCTTGCAAACCCAAAACATCAATATCATG * * * * * 1387587 TATCCTAATGAGAAGCCCATATTTATGATGCCTAATCTTGAAAAGAATAGGGACTAGTATGACTG 131 TATCCTAATGAGAAGACCATGTTTATGATGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTA * * * * * 1387652 TTCTTGTTTGCATAATTTAAGAGATAAACTTTGATTTTATCAAAAACTATGGAAAGAAAA-CCTT 196 TTCTTGTTTGTATAATTTAAGAGACAAACTTTGATTCTATCAAAAACTGTGGAAAGAAAAGCTTT * * * * 1387716 TCTTGCGACACCAAAGCATCAATGTCATGTATCTTAATGAAGGTATTGTGTTTTTGG-TTCCCAA 261 TCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTGGCTTCCCAA * ** 1387780 TCTTG-AAAGAATGGAGAATGCTACGAGAATCGATGCTTGTCTTATTTATA-GGATGAACTTTGA 325 TCTTGCAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTA-AGGGATGAACTTTGA * * * 1387843 TTTTATGAAAAATAGGGCAAAG--AAAGATTTCCTAGCAAAA-AAAATCCTCAATATTATTTATC 389 TTTTAAG-AAAATAGGGCAAAGAAAAAGATTTCCT-GCAAAAGAAAATCATCAATATCATTTATC * 1387905 CTAAAGAGGAGAATA-TGTTTATAG 452 CTAATGAGGAGAA-AGTGTTTATAG * * * * * * * 1387929 TGTCTAATCACAAAATAAGTGAAGATCTTTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAA 1 TGCCTAATCACCAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACATGAA * ** * * * * 1387994 CTTAGACTTTACAAAAATTGGTGGGAAAAATACCTTTCTGGCAAAACCAAAACATCAATATCAAG 66 CTTAGACTTTACAAAAATTAGTGAAAAAAATGCCTTTCTTGCAAACCCAAAACATCAATATCATG * * * * 1388059 TATCCTAATGAGAA-AACAGGTTTATGGTGCCTAATCTTGGAAAGAATGGGGATTAGTATGACTA 131 TATCCTAATGAGAAGACCATGTTTATGATGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTA * * * * 1388123 TTCTTATTTGTATTATTTAAGAGATAAACTTTGATTCTATCAAAAAC-GATAG-AAGAAAAGGCT 196 TTCTTGTTTGTATAATTTAAGAGACAAACTTTGATTCTATCAAAAACTG-TGGAAAGAAAA-GCT * * * 1388186 TTTCTTGCAACACCAAAGCATCAATGTCGTGTATCCTAATAAAGGAAATGTGTTTTGGCTTCCCA 259 TTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCA * * * * * * * 1388251 ATCTTGAAAATAATGGAGTCTATTATGAGAA-CTGATGCTTATCTTATTTAAGGGATTAACTTCG 324 ATCTTGCAAAGAATGGAGACTATTACGAGAATC-GATGCTTGTCTTATTTAAGGGATGAACTTTG * * * * * * * 1388315 ATTTTAAGAAATGTAGGGCATA-AAAAAGATTTCCATGTAAACGAAAATCATTAGTACCATTTAT 388 ATTTTAAGAAA-ATAGGGCAAAGAAAAAGATTTCC-TGCAAAAGAAAATCATCAATATCATTTAT * 1388379 CCTAATGAGGAGAATGTGTTTATAG 451 CCTAATGAGGAGAAAGTGTTTATAG ** ** * * 1388404 TGCCTAATCATAAAATGAAA-GAAGATCATTACTAGAATCCATGTTTGTCTCATACGAGATACGA 1 TGCCTAATCACCAAAT-AAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACATGA * * * * ** * * * 1388468 GCTTCGACTTTACAAAAATTGGTGAGAAAAAA-GCCTTTCTTACAAAGGCAAAACATCCACATGA 65 ACTTAGACTTTACAAAAATTAGTGA-AAAAAATGCCTTTCTTGCAAACCCAAAACATCAATATCA ** * * * * * * * * 1388532 CATATTCTAATAAGAAGACTATGTTTATGGTGCCAAATCCTGAAAAGAATGGGAATTAGTATGAG 129 TGTATCCTAATGAGAAGACCATGTTTATGATGCCTAATCTTGAAAAGAATGGGGATTAGTATGAC * * * * * * 1388597 TATTCTTCTTTGTCTTATTTGAA-AGGCAAACTTTGATTTTATCAAAAA-TGGTGGAAAGGAAAG 194 TATTCTTGTTTGTATAATTT-AAGAGACAAACTTTGATTCTATCAAAAACT-GTGGAAAGAAAAG * * 1388660 CTTTTCTTGCAACACCAAAGCATTAATGTCATGTATCCTAATGAAAGGAATGTGTTTTGGCTTCC 257 CTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCC * * * * * 1388725 CAATCTTGCAATGAATGGAGACTATTATGAGAATCGTTGCTTGTGTTTTTTAAGGGATGAACTTT 322 CAATCTTGCAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTT * * * 1388790 GAGTTTAAGGAAAATAGGGC-AAGGAAAAGATTTTCATGCAAAAGAAAATCATCAATA-CTATTT 387 GATTTTAA-GAAAATAGGGCAAAGAAAAAGA-TTTCCTGCAAAAGAAAATCATCAATATC-ATTT * 1388853 ATCCTAATAAGGAGAAAGTGTCTT-TAG 449 ATCCTAATGAGGAGAAAGTGT-TTATAG * 1388880 TG-CTCAATCACCAAATAAATGAAGATCATTACTAGAATCGATGTTTGTCTCATTTGAGACATGA 1 TGCCT-AATCACCAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACATGA * * * 1388944 ACATAGACTTTACAAAAATTAGTCAAAAAAATGCCTTTCTTGCAAACCCAAAACATCAGTATCAT 65 ACTTAGACTTTACAAAAATTAGTGAAAAAAATGCCTTTCTTGCAAACCCAAAACATCAATATCAT * * * * * 1389009 GTATCCTAATGAGAAGCCCATGTTTGTGATGCCTAATCTTGAAATGAATAGGGATTACTATGACT 130 GTATCCTAATGAGAAGACCATGTTTATGATGCCTAATCTTGAAAAGAATGGGGATTAGTATGACT * * ** * 1389074 GTTCTTGTTTATATAATTTAAGAGGTAAACTTTGATTCTATCAAAAACTGTGAAAAGAAAAGCTT 195 ATTCTTGTTTGTATAATTTAAGAGACAAACTTTGATTCTATCAAAAACTGTGGAAAGAAAAGCTT * * * * 1389139 TTTTTGGCCACACCAAAGCATCAATGTCATGTATCTTAATGAAGGGATTGTGTTTTTGG-TTCCC 260 TTCTT-GCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTGGCTTCCC * * * * * 1389203 AATCTTG-AAAGAATGGAGAATGTTATGAGCATCGATGCTTGTCTTATTTATGGGATGAACTTTG 323 AATCTTGCAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTG * * * * * * 1389267 ATTTTATAGAAAATTGGGTAAAGAAAAAAATTTACCTGCAAAA-AAAATCCTCAATGTCGTTTAT 388 ATTTTA-AGAAAATAGGGCAAAGAAAAAGATTT-CCTGCAAAAGAAAATCATCAATATCATTTAT * * * 1389331 CTTAATGAGGAGAATGTGTTTATAA 451 CCTAATGAGGAGAAAGTGTTTATAG * * * * 1389356 TGCCTAATCACCAAATAAATGTAGATCATTACTAGAATCCATGTTTATCTTATTTGAGGCATGAA 1 TGCCTAATCACCAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACATGAA * * * * * 1389421 CTTAGACTCTATAAAAATTAGTCAAAAAAATGCCTTTCTTGCAAACCGAAAACATCAATATCGTG 66 CTTAGACTTTACAAAAATTAGTGAAAAAAATGCCTTTCTTGCAAACCCAAAACATCAATATCATG * * * 1389486 TATCCTAATGAGAAAACTATGTTTATGATACCTAATCTTGAAAAGAATGGGGATTAGTATGACTA 131 TATCCTAATGAGAAGACCATGTTTATGATGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTA * * 1389551 TTCTTATTTATATAATTTAAGAGACAAACTTTGATTCTATCAAAAACTGTGGAAAGAAAAGCTTT 196 TTCTTGTTTGTATAATTTAAGAGACAAACTTTGATTCTATCAAAAACTGTGGAAAGAAAAGCTTT * * * * 1389616 TCTTGCGACACCAAAGCATTAGTGTCATGTATCCTAATGAAAGGAATGTGTTTTGGCTTCCCAAT 261 TCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAAT * * * * * 1389681 CCTGCAATGAATGGAGACTATTACGAGAATCGATGCTTGTGTTTTTTAAGGGATGAACTTTGAGT 326 CTTGCAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATT * * ** * 1389746 TTAAGGAAAATAGGGC-AAGGAGAAGATTTTTATGCAAAAGAAAATCATCAATATCATTTATCTT 391 TTAA-GAAAATAGGGCAAAGAAAAAGA-TTTCCTGCAAAAGAAAATCATCAATATCATTTATCCT * * 1389810 AATAAGGAGAAAGTGTTTTTAG 454 AATGAGGAGAAAGTGTTTATAG * 1389832 TGCCCAATCACCAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACATGAA 1 TGCCTAATCACCAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACATGAA * * * * * 1389897 CTTAAACTTCACAAAAATTACTGAAAAAAATGCCTTTCTTCCAAACCCAAAACATCAGTATCATG 66 CTTAGACTTTACAAAAATTAGTGAAAAAAATGCCTTTCTTGCAAACCCAAAACATCAATATCATG * * * * * 1389962 TATCCTAATGAGAAGCCCATATTTATGATGCCTAATCTTGAAAAGAATAGGGACTAGTATGACTG 131 TATCCTAATGAGAAGACCATGTTTATGATGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTA * * * * * 1390027 TTCTTGTTTGCATAATTTAAGAGATAAACTTTGATTTTATCAAAAACTATGGAAAGAAAA-CCTT 196 TTCTTGTTTGTATAATTTAAGAGACAAACTTTGATTCTATCAAAAACTGTGGAAAGAAAAGCTTT * * * * 1390091 TCTTGCGACACCAAAGCATCAATGTCATGTATCTTAATGAAGGTATTGTGTTTTTGG-TTCCCAA 261 TCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTGGCTTCCCAA * ** 1390155 TCTTG-AAAGAATGGAGAATGCTACGAGAATCGATGCTTGTCTTATTTATA-GGATGAACTTTGA 325 TCTTGCAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTA-AGGGATGAACTTTGA * * * 1390218 TTTTATGAAAAATAGGGCAAAG--AAAGATTTCCTAGCAAAA-AAAATCCTCAATATTATTTATC 389 TTTTAAG-AAAATAGGGCAAAGAAAAAGATTTCCT-GCAAAAGAAAATCATCAATATCATTTATC * 1390280 CTAAAGAGGAGAATA-TGTTTATAG 452 CTAATGAGGAGAA-AGTGTTTATAG * * * * * * * 1390304 TGTCTAATCACAAAATAAGTGAAGATCTTTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAA 1 TGCCTAATCACCAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACATGAA * ** * * * * 1390369 CTTAGACTTTACAAAAATTGGTGGGAAAAATACCTTTCTGGCAAAACCAAAACATCAATATCAAG 66 CTTAGACTTTACAAAAATTAGTGAAAAAAATGCCTTTCTTGCAAACCCAAAACATCAATATCATG * * * * 1390434 TATCCTAATGAGAA-AACAGGTTTATGGTGCCTAATCTTGGAAAGAATGGGGATTAGTATGACTA 131 TATCCTAATGAGAAGACCATGTTTATGATGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTA * * * * 1390498 TTCTTATTTGTATTATTTAAGAGATAAACTTTGATTCTATCAAAAAC-GATAG-AAGAAAAGGCT 196 TTCTTGTTTGTATAATTTAAGAGACAAACTTTGATTCTATCAAAAACTG-TGGAAAGAAAA-GCT * * * 1390561 TTTCTTGCAACACCAAAGCATCAATGTCGTGTATCCTAATAAAGGAAATGTGTTTTGGCTTCCCA 259 TTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCA * * * * * * * 1390626 ATCTTGAAAATAATGGAGTCTATTATGAGAA-CTGATGCTTATCTTATTTAAGGGATTAACTTCG 324 ATCTTGCAAAGAATGGAGACTATTACGAGAATC-GATGCTTGTCTTATTTAAGGGATGAACTTTG * * * * * * * 1390690 ATTTTAAGAAATGTAGGGCATA-AAAAAGATTTCCATGTAAACGAAAATCATTAGTACCATTTAT 388 ATTTTAAGAAA-ATAGGGCAAAGAAAAAGATTTCC-TGCAAAAGAAAATCATCAATATCATTTAT * 1390754 CCTAATGAGGAGAATGTGTTTATAG 451 CCTAATGAGGAGAAAGTGTTTATAG ** ** * * 1390779 TGCCTAATCATAAAATGAAA-GAAGATCATTACTAGAATCCATGTTTGTCTCATACGAGATACGA 1 TGCCTAATCACCAAAT-AAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACATGA * * * * ** * * * 1390843 GCTTCGACTTTACAAAAATTGGTGAGAAAAAA-GCCTTTCTTACAAAGGCAAAACATCCACATGA 65 ACTTAGACTTTACAAAAATTAGTGA-AAAAAATGCCTTTCTTGCAAACCCAAAACATCAATATCA ** * * * * * * * * 1390907 CATATTCTAATAAGAAGACTATGTTTATGGTGCCAAATCCTGAAAAGAATGGGAATTAGTATGAG 129 TGTATCCTAATGAGAAGACCATGTTTATGATGCCTAATCTTGAAAAGAATGGGGATTAGTATGAC * * * * * * 1390972 TATTCTTCTTTGTCTTATTTGAA-AGGCAAACTTTGATTTTATCAAAAA-TGGTGGAAAGGAAAG 194 TATTCTTGTTTGTATAATTT-AAGAGACAAACTTTGATTCTATCAAAAACT-GTGGAAAGAAAAG * * 1391035 CTTTTCTTGCAACACCAAAGCATTAATGTCATGTATCCTAATGAAAGGAATGTGTTTTGGCTTCC 257 CTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCC * * * * * 1391100 CAATCTTGCAATGAATGGAGACTATTATGAGAATCGTTGCTTGTGTTTTTTAAGGGATGAACTTT 322 CAATCTTGCAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTT * * * 1391165 GAGTTTAAGGAAAATAGGGC-AAGGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTA 387 GATTTTAA-GAAAATAGGGCAAAGAAAAAGA-TTTCCTGCAAAAGAAAATCATCAATATCATTTA * * 1391229 TCCTAATAAGGAGAAAGTGTTTTTAG 450 TCCTAATGAGGAGAAAGTGTTTATAG * * * 1391255 TGCCCAATCACCAAATAAATGAAGATCATTACAAGAATTCATGTTTGTCTCATTTGAGACATGAA 1 TGCCTAATCACCAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACATGAA * * * 1391320 CTTATACTTTACAAAAATTAGTCAAAAAAATGCCTTTCTTGCAAACCCAAAACATCAGTATCATG 66 CTTAGACTTTACAAAAATTAGTGAAAAAAATGCCTTTCTTGCAAACCCAAAACATCAATATCATG * * * * * 1391385 TATCCTAATGAGAAGCCCATGTTTGTGATGCCTAATCTTGAAAAGAATAGGGATTACTATGACTG 131 TATCCTAATGAGAAGACCATGTTTATGATGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTA * 1391450 TTCTTGTTTGTATAATTTAAGAGATAAACTTTGATTCTATCAAAAACTGTGGAAAGAAAAGCTTT 196 TTCTTGTTTGTATAATTTAAGAGACAAACTTTGATTCTATCAAAAACTGTGGAAAGAAAAGCTTT ** * * * 1391515 TCTTGTGACACCAAATCATCAATGTCATGTATCTTAATGAAGGGATTGTGTTTTTTGG-TTCCCA 261 TCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG--TTTTGGCTTCCCA * * * * 1391579 ATCTTG-AAAGAATGGAGAATGTTACGAGCATCGATGCTTGTCTTATTTATGGGATGAACTTTGA 324 ATCTTGCAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA * * * * * * * * 1391643 TTTTATGGAAAATTGGGTAAAGAAAAAAATTTACCTGCAAAA-AAAGTCCTCAATGTCGTTTATC 389 TTTTA-AGAAAATAGGGCAAAGAAAAAGATTT-CCTGCAAAAGAAAATCATCAATATCATTTATC * * 1391707 CTAATGAGGAGAATGTGTTTATAA 452 CTAATGAGGAGAAAGTGTTTATAG * * * * 1391731 TGACTAATCACCAAATGAAA-GTAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCATGA 1 TGCCTAATCACCAAAT-AAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACATGA * * * ** 1391795 ACTTAGACTCTACAAAAATTAGTCAAAAAAATGCCTTTCTTGCAAACCCAAAACATCAGTATTGT 65 ACTTAGACTTTACAAAAATTAGTGAAAAAAATGCCTTTCTTGCAAACCCAAAACATCAATATCAT * * * 1391860 GTATCCTAATGAGAAAACTATGTTTATGATACCTAATCTTGAAAAGAATGGGGATTAGTATGACT 130 GTATCCTAATGAGAAGACCATGTTTATGATGCCTAATCTTGAAAAGAATGGGGATTAGTATGACT * * 1391925 ATT-TTATTTGTATAATTTAAGAGACAAACTTTGATTCTATCAAAAACTGTGGAAATAAAAGCTT 195 ATTCTTGTTTGTATAATTTAAGAGACAAACTTTGATTCTATCAAAAACTGTGGAAAGAAAAGCTT ** *** * 1391989 TTCTTGTGACACCAAAGC-TTTGTGTCATGTATCCTAATGAAAGGAATGTGTTTTGGCTTCCCAA 260 TTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAA * * * * * * 1392053 TCTTGCAATGAATGGAGACTATTACGACAATCGATGCTTGTGTTTTTTGAGGGATGAACTTTGAG 325 TCTTGCAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT * * 1392118 TTTAAGGAAAATAGGGC-AAGGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCC 390 TTTAA-GAAAATAGGGCAAAGAAAAAGA-TTTCCTGCAAAAGAAAATCATCAATATCATTTATCC * * 1392182 TAATAAGGAGAAAGTGTTTTTAG 453 TAATGAGGAGAAAGTGTTTATAG * 1392205 TGCCCAATCACCAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACATGAA 1 TGCCTAATCACCAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACATGAA * * 1392270 CTTAAACTTTACAAAAATTAGTCAAAAAAATGCCTTTCTTGCAAACCCAAAACATCAATATCATG 66 CTTAGACTTTACAAAAATTAGTGAAAAAAATGCCTTTCTTGCAAACCCAAAACATCAATATCATG * * * * * * * 1392335 TATCCTAATGACAAGCCCAT-ATT-T-ATGCCTAATCTTGAAATGAATAGGGATTACTATGACTG 131 TATCCTAATGAGAAGACCATGTTTATGATGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTA * 1392397 TTCTTGTTTGTATAATTTAAGAGATAAACTTTGATTCTATCAAAAACTGTGGAAAGAAAAGCTTT 196 TTCTTGTTTGTATAATTTAAGAGACAAACTTTGATTCTATCAAAAACTGTGGAAAGAAAAGCTTT ** * * * 1392462 TCTTGTGACACCAAAGCATCATTGTCATGTATCTTAATGAAGGGATTGTGTTTTTTGG-TTCCCA 261 TCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG--TTTTGGCTTCCCA * * * * 1392526 ATCTTG-AAAGAATGGAGAATGTTACGAGCATCGATGCTTGTCTTATTTATGGGATGAACTTTGA 324 ATCTTGCAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA * * * * * * * * 1392590 TTTTATGGAAAATTGGGTAAAGAAAAAAATTTACCTGCAAAA-AAAGTCCTCAATGTCGTTTATC 389 TTTTA-AGAAAATAGGGCAAAGAAAAAGATTT-CCTGCAAAAGAAAATCATCAATATCATTTATC * * 1392654 CTAATGAGGAGAATGTGTTTATAA 452 CTAATGAGGAGAAAGTGTTTATAG * * * * * * 1392678 TGCCTAATCACC-AATGAATGTAGATCATTACTAGAATCCATGTTTGTCTTATTTGCGGCACGAA 1 TGCCTAATCACCAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACATGAA * * * * * 1392742 CTTAGACTCTACATAAATTAGTCAAAAAAATGCCTTTCTTGCAAACCCAAAACATCAGTATCGTG 66 CTTAGACTTTACAAAAATTAGTGAAAAAAATGCCTTTCTTGCAAACCCAAAACATCAATATCATG * ** * 1392807 TATCCTAATGAGAAAAGTATGTTTATGATACCTAATCTTGAAAAGAATGGGGATTAGTATGACTA 131 TATCCTAATGAGAAGACCATGTTTATGATGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTA * * * 1392872 TTCTTATTTGTATAATTTAAGAGACAAACTTTGATTCTATCAAAAACTATGGAAAGAAAAGCATT 196 TTCTTGTTTGTATAATTTAAGAGACAAACTTTGATTCTATCAAAAACTGTGGAAAGAAAAGCTTT * * 1392937 TCTTGCAACACCAAAGCATCAATGTCATGTATCCTAAGGAAGGGATTGTGTTTTTGG-TTCCCAA 261 TCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTGGCTTCCCAA * * * * * * * 1393001 TC-TGGAAAGAATGGAGAATGTTACAAGAACCGATGTTTGTCTTATTTAAGAGATGAACTTTGAT 325 TCTTGCAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT * * * * 1393065 TTTATGAAAAATAGGGCAAAG-ACAAGATTTCC--CAAAAAAAAATCCTCAATATCATTTATCCT 390 TTTAAG-AAAATAGGGCAAAGAAAAAGATTTCCTGCAAAAGAAAATCATCAATATCATTTATCCT * * * * 1393127 AATGAGGACAATGTGTCTATAA 454 AATGAGGAGAAAGTGTTTATAG * * * * * * * * 1393149 TGTCTAATCACAAAATAAGTGAAGATCTTTAGTAGAATCTATGTTTGTCTCATTTGAGGCACGAA 1 TGCCTAATCACCAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACATGAA * * ** * * 1393214 CTTAGAATTTACAAAAATTGGTGGCAAAAATACCTTTCTGGTG-AAA-CCAAAACATCAATATCG 66 CTTAGACTTTACAAAAATTAGTGAAAAAAATGCCTTTCT--TGCAAACCCAAAACATCAATATCA * * * * * 1393277 TGTATCCTAATGAGAAGATCATGTTTATGGTGCCTAATCCTGAAAAGGATGGTGATTAGTATGAC 129 TGTATCCTAATGAGAAGACCATGTTTATGATGCCTAATCTTGAAAAGAATGGGGATTAGTATGAC * * * ** 1393342 TATTCTTGTTTGTATTATTTAAGAGACAAATTTTGATTATATCAAAAA-TGGTGGAAAGAAGGGC 194 TATTCTTGTTTGTATAATTTAAGAGACAAACTTTGATTCTATCAAAAACT-GTGGAAAGAAAAGC * * * ** * * 1393406 TTTTCTTGCAACACCAAAGCTTTAATGTCATGTATCCTAATAAAGAAAATGTGTTTTGGTTTCCT 258 TTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCC * * * * * * * 1393471 AATCTTGAAAAGAATGGAGACTATTATGAGAA-CTGATGCTTATCTTGTTGAA-GGATTAACTTC 323 AATCTTGCAAAGAATGGAGACTATTACGAGAATC-GATGCTTGTCTTATTTAAGGGATGAACTTT * * * * 1393534 GATTTTAAGAAAAATAGGGTAAAGAAAAA-ATTTTCGTGCAAAAGAAAGTCAT-AAGTTTCATTT 387 GATTTTAAG-AAAATAGGGCAAAGAAAAAGA-TTTCCTGCAAAAGAAAATCATCAA-TATCATTT * 1393597 ATCCTAATGAGAAGAATA-TGTTTATAG 449 ATCCTAATGAGGAGAA-AGTGTTTATAG * ** * * * 1393624 TGCCTAATTATAAAATGAAA-GACGATAATTACTACAATCCATGTTTGTCTCATTTGAGATC-T- 1 TGCCTAATCACCAAAT-AAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGA-CATG * * * ** * * * * 1393686 AAGCTTTGACTTTACACAAATTGGTGAGAAAAAA-GCCTTTCTTGTGAAGCCAAAGCATTAATAG 64 AA-CTTAGACTTTACAAAAATTAGTGA-AAAAAATGCCTTTCTTGCAAACCCAAAACATCAATAT * ** * * * * * * 1393750 GATGTATTTTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAATGAATGGGAATTAGTATG 127 CATGTATCCTAATGAGAAGACCATGTTTATGATGCCTAATCTTGAAAAGAATGGGGATTAGTATG * * * * * * * 1393815 AGTATTCTTGTTTTTCTTATTTAAAAGATAAACTTTGATTCTATCAAAAA-TGGTGAAAAGAAAA 192 ACTATTCTTGTTTGTATAATTTAAGAGACAAACTTTGATTCTATCAAAAACT-GTGGAAAGAAAA * * 1393879 GCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTCTTTTGGCTTC 256 GCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTC * * * * 1393944 CCAATCTTGGAAAGAATGAAGACTGTTACGAGAATCGATGCTTGTGTCT-TTTAAGGGATGAACT 321 CCAATCTTGCAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCT-TATTTAAGGGATGAACT * * * * * * * 1394008 TTGAGTTTAAGGAAAAAACGGC-AAGCAAAAGATTTTCATGCAAAACAAAATCATCAGTATCATT 385 TTGATTTTAA-GAAAATAGGGCAAAGAAAAAGA-TTTCCTGCAAAAGAAAATCATCAATATCATT * * 1394072 TATCCTAATGAGAAGAATGTGTTTATAG 448 TATCCTAATGAGGAGAAAGTGTTTATAG * * * * * ** 1394100 TGTCTAATCA-TAATATGAGTGAAGATCAATGGTAGAATCCATGTTTGTCTCATTTGAGGCACA- 1 TGCCTAATCACCAA-ATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA-G-ACAT * * ** * * * * 1394163 AAACTTAGACTTTACAAAAATTGGTAGGTAAAAA-GCCTTTCTTGTGAAA-CTAAAGCATTAATA 63 GAACTTAGACTTTACAAAAATTAGT-GAAAAAAATGCCTTTCTTG-CAAACCCAAAACATCAATA * * * * * * * * * * 1394226 TCTTGTATCCTAATAAGAGGACTATGTTTAGGGTGCCTAATCATGAAAGGAATGGGGATTAGAAA 126 TCATGTATCCTAATGAGAAGACCATGTTTATGATGCCTAATCTTGAAAAGAATGGGGATTAGTAT * * * * * * * 1394291 CACTATTCATGTTTGTTTTATTTTAGAGACATACTTTGATTCTATCCAAAA-TGGTGGAAAGAAA 191 GACTATTCTTGTTTGTATAATTTAAGAGACAAACTTTGATTCTATCAAAAACT-GTGGAAAGAAA *** * * * * * * 1394355 AGCTTTTCTTTTGATACCAAAGCATCAATGCCTTGTATCCTAATAAATGGAATGTGTTTTGGCCT 255 AGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTT * * * * * * * * * * 1394420 CCCAATCTTGAAAAGAATAGAGATTCTTACGGGAATTGATGTTTATCTTATTTAAGGGATAAAGT 320 CCCAATCTTGCAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACT * * * * * ** 1394485 TTGATTTTATGGAAAGTAGGGTAGAG-AAAAGATTTCC-GAACAAAAGAAAATCGTCAATATTTT 385 TTGATTTTA-AGAAAATAGGGCAAAGAAAAAGATTTCCTG--CAAAAGAAAATCATCAATATCAT * * 1394548 TTACCCTAATGAGGAGAATGTGTTTATAG 447 TTATCCTAATGAGGAGAAAGTGTTTATAG * * * * * * * * 1394577 TGCCTAATCACAAAATGAGTAAAAATCAATAGTAGAATCCATGTTTGTCTCATTTGAGGCATGAA 1 TGCCTAATCACCAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACATGAA * * * * ** 1394642 CTTACACTTTACAAAAATTGGTGAGAAAAATGCCTTTCTTGCAAAACCAAAACATCAATATTGTG 66 CTTAGACTTTACAAAAATTAGTGAAAAAAATGCCTTTCTTGCAAACCCAAAACATCAATATCATG * * 1394707 TATCGTAATGAGAAAACCATG 131 TATCCTAATGAGAAGACCATG 1394728 ATGTATTATT Statistics Matches: 6971, Mismatches: 1082, Indels: 340 0.83 0.13 0.04 Matches are distributed among these distances: 470 19 0.00 471 277 0.04 472 954 0.14 473 375 0.05 474 551 0.08 475 1170 0.17 476 3001 0.43 477 596 0.09 478 28 0.00 ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32 Consensus pattern (475 bp): TGCCTAATCACCAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACATGAA CTTAGACTTTACAAAAATTAGTGAAAAAAATGCCTTTCTTGCAAACCCAAAACATCAATATCATG TATCCTAATGAGAAGACCATGTTTATGATGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTA TTCTTGTTTGTATAATTTAAGAGACAAACTTTGATTCTATCAAAAACTGTGGAAAGAAAAGCTTT TCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAAT CTTGCAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATT TTAAGAAAATAGGGCAAAGAAAAAGATTTCCTGCAAAAGAAAATCATCAATATCATTTATCCTAA TGAGGAGAAAGTGTTTATAG Found at i:1391627 original size:159 final size:158 Alignment explanation
Indices: 1386228--1394011 Score: 1698 Period size: 159 Copynumber: 49.2 Consensus size: 158 1386218 TGAGTATTCT ** * * 1386228 TGTTTGTCTTATTTGAA-AGACAAACTTTGATTTTATCAAAAA-TGCTGGAAAGAAAAGCTATTC 1 TGTTTGTCTTATTT-AAGAGATGAACTTTGATTCTATCAAAAATTG-TGGAAAGAAAAGCTTTTC * * * * 1386291 TTGCAACACCAAAGCATTAATGTCATGTATCCTAACGAAAGGAATGTGTTT-TGGCTTCCCAATC 64 TTGCAA-ACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTATGG-TTCCCAATC * * * 1386355 TTGCAATGAATGGAGACT-ATTACGA-CAATCGG 127 TTG-AAAGAATGGAGAATCATTACGAGC-ATCGA * * * * *** * * * 1386387 TGCTTGTGTTTTTTAAGGGATGAACTTTGAGTT-TAAGGAAAATAG-GGCAAGGAAAAGATTTTC 1 TGTTTGTCTTATTTAAGAGATGAACTTTGA-TTCTATCAAAAATTGTGG-AAAGAAAAGCTTTTC * ** * * * * * * 1386450 ATGCAAAAGAAAATCATCAAT-ACTATTTATCCTAAT-AAGGAGAAAGTGTCTT-TAGTGCTCAA 64 TTGC-AAACCAAATCATCAATGTC-ATGTATCCTAATGAAGG-GAATGTGT-TTATGGTTCCCAA *** * * * * 1386512 TCACCAAATAAATGAAG-ATCATTACTAGAATCGA 125 TCTTGAAA-GAATGGAGAATCATTACGAGCATCGA * * * * * * * 1386546 TGTTTGTCTCATTTGAGACATGAACATAGACTT-TA-CAAAAATTAGT-CAAA-AAAATGCCTTT 1 TGTTTGTCTTATTTAAGAGATGAACTTTGA-TTCTATCAAAAATT-GTGGAAAGAAAA-GCTTTT * * * *** * * * * 1386607 CTTGCAAACCCAAAACATCAGTATCATGTATCCTAATGAGAAGCCCA--TGTTTGTGATGCCTAA 63 CTTGCAAA-CCAAATCATCAATGTCATGTATCCTAAT--GAAGGGAATGTGTTTATGGTTCCCAA * * * * * 1386670 TCTTGAAATGAATAGG-G-ATTACTATGA-CTGTTC-T 125 TCTTGAAA-GAAT-GGAGAATCATTACGAGC--ATCGA * * * * * * * * 1386704 TGTTTATATAATTTAAGAGGTAAACTTTGATTCTATCAAAAACTGTGAAAAGAAAAGCTTTTTTT 1 TGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAATTGTGGAAAGAAAAGCTTTTCTT * * * * * 1386769 GGCCACACCAAAGCATCAATGTCATGTATCTTAATGAAGGGATTGTGTTTTTGGTTCCCAATCTT 66 -G-CAAACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTATGGTTCCCAATCTT * 1386834 GAAAGAATGGAGAAT-GTTACGAGCATCGA 129 GAAAGAATGGAGAATCATTACGAGCATCGA * * * * ** * 1386863 TGCTTGTCTTATTTATGGGATGAACTTTGATTTTAT-AGAAAATTG-GGTAAAGAAAAAAATTTA 1 TGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCA-AAAATTGTGG-AAAG-AAAAGCTTTT * ** * * * * ** * * 1386926 CCTGCAAAAAAAATCCTCAATGTCGTTTATCTTAATG-AGGAGAATGTGTTTATAATGCCTAATC 63 CTTGCAAACCAAATCATCAATGTCATGTATCCTAATGAAGG-GAATGTGTTTATGGTTCCCAATC *** * * * * * 1386990 ACCAAATAAATGTAG-ATCATTACTAGAATCCA 127 TTGAAA-GAATGGAGAATCATTACGAGCATCGA * * * * * * 1387022 TGTTTATCTTATTTGAG-GCATGAACTTAGACTCTAT-AAAAATTAGT-CAAA-AAAATGCCTTT 1 TGTTTGTCTTATTTAAGAG-ATGAACTTTGATTCTATCAAAAATT-GTGGAAAGAAAA-GCTTTT * * * ** * * * * 1387083 CTTGCAAACCGAAAACATCAATATCGTGTATCCTAATG-AGAAAACTATGTTTATGATACCTAAT 63 CTTGCAAACC-AAATCATCAATGTCATGTATCCTAATGAAGGGAA-TGTGTTTATGGTTCCCAAT * * * * * 1387147 CTTGAAAAGAATGG-GGATTAGTATGA-CTATTC-T 126 CTTG-AAAGAATGGAGAATCATTACGAGC-A-TCGA * * * * ** * 1387180 TATTTATATAATTTAAGAGACAAACTTTGATTCTATCAAAAACTGTGGAAAGAAAAGCTTTTCTT 1 TGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAATTGTGGAAAGAAAAGCTTTTCTT * * * * * * 1387245 GCGACACCAAAGCATTAGTGTCATGTATCCTAATGAAAGGAATGTGTTT-TGGCTTCCCAATCCT 66 GC-AAACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTATGG-TTCCCAATCTT * * * 1387309 GCAATGAATGGAGACT-ATTACGAGAATCGA 129 G-AAAGAATGGAGAATCATTACGAGCATCGA * * * * *** * * * * 1387339 TGCTTGTGTTTTTTAAGGGATGAACTTTGAGTT-TAAGGAAAATAG-GGCAAGGAGAAGATTTT- 1 TGTTTGTCTTATTTAAGAGATGAACTTTGA-TTCTATCAAAAATTGTGG-AAAGAAAAGCTTTTC ** * * * * * * * 1387401 TATGCAAAAGAAAATCATCAATATCATTTATCTTAAT-AAGGAGAAAGTGTTTTTAGTGCCCAAT 64 T-TGC-AAACCAAATCATCAATGTCATGTATCCTAATGAAGG-GAATGTGTTTATGGTTCCCAAT *** * * * * * 1387465 CACCAAATAAATGAAG-ATCATTACTAGAATCCA 126 CTTGAAA-GAATGGAGAATCATTACGAGCATCGA * * * ** * * 1387498 TGTTTGTCTCATTTGAGACATGAACTTAAACTTC-A-CAAAAATTACT-GAAA-AAAATGCCTTT 1 TGTTTGTCTTATTTAAGAGATGAACTTTGA-TTCTATCAAAAATT-GTGGAAAGAAAA-GCTTTT * * * * *** * * * * 1387559 CTTCCAAACCCAAAACATCAGTATCATGTATCCTAATGAGAAGCCCA--TATTTATGATGCCTAA 63 CTTGCAAA-CCAAATCATCAATGTCATGTATCCTAAT--GAAGGGAATGTGTTTATGGTTCCCAA * * * * * 1387622 TCTTGAAAAGAATAGG-GACT-AGTATGA-CTGTTC-T 125 TCTTG-AAAGAAT-GGAGAATCATTACGAGC--ATCGA * * * * * * 1387656 TGTTTG-CATAATTTAAGAGATAAACTTTGATTTTATCAAAAACTATGGAAAGAAAA-CCTTTCT 1 TGTTTGTC-TTATTTAAGAGATGAACTTTGATTCTATCAAAAATTGTGGAAAGAAAAGCTTTTCT * * * * * * 1387719 TGCGACACCAAAGCATCAATGTCATGTATCTTAATGAAGGTATTGTGTTTTTGGTTCCCAATCTT 65 TGC-AAACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTATGGTTCCCAATCTT * 1387784 GAAAGAATGGAGAATGC--TACGAGAATCGA 129 GAAAGAATGGAGAAT-CATTACGAGCATCGA * * * * * * 1387813 TGCTTGTCTTATTTATAG-GATGAACTTTGATTTTATGAAAAATAG-GGCAAAG-AAAGATTTCC 1 TGTTTGTCTTATTTA-AGAGATGAACTTTGATTCTATCAAAAATTGTGG-AAAGAAAAGCTTTTC * ** * * * * * * * * 1387875 TAGCAAAAAAAATCCTCAATATTATTTATCCTAAAG-AGGAGAATATGTTTATAGTGT-CTAATC 64 TTGCAAACCAAATCATCAATGTCATGTATCCTAATGAAGG-GAATGTGTTTATGGT-TCCCAATC *** * * * * * 1387938 ACAAAATAAGTGAAG-ATCTTTA-GTAGAATCCA 127 TTGAAAGAA-TGGAGAATCATTACG-AGCATCGA * * * * * * 1387970 TGTTTGTCTCATTTGAG-GCACGAACTTAGACTT-TA-CAAAAATTGGTGGGAAA-AATA-CCTT 1 TGTTTGTCTTATTTAAGAG-ATGAACTTTGA-TTCTATCAAAAATT-GT-GGAAAGAAAAGCTTT * * * * ** * * * 1388030 TCTGGCAAAACCAAAACATCAATATCAAGTATCCTAATG-AGAAAACAG-GTTTATGGTGCCTAA 62 TCTTGC-AAACCAAATCATCAATGTCATGTATCCTAATGAAGGGAA-TGTGTTTATGGTTCCCAA * * * * * 1388093 TCTTGGAAAGAATGG-GGATTAGTATGA-CTATTC-T 125 TCTT-GAAAGAATGGAGAATCATTACGAGC-A-TCGA * * * * * 1388127 TATTTGTATTATTTAAGAGATAAACTTTGATTCTATCAAAAA-CGATAG-AAGAAAAGGCTTTTC 1 TGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAATTG-TGGAAAGAAAA-GCTTTTC * * * * 1388190 TTGCAACACCAAAGCATCAATGTCGTGTATCCTAATAAAGGAAATGTGTTT-TGGCTTCCCAATC 64 TTGCAA-ACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTATGG-TTCCCAATC * * * 1388254 TTGAAAATAATGGAG--TCTATTATGAG-AACTGA 127 TTG-AAAGAATGGAGAATC-ATTACGAGCATC-GA * * * * * * 1388286 TGCTTATCTTATTTAAGGGATTAACTTCGATT-T-T-AAGAAA-TGTAGGGCATAA-AAAAGATT 1 TGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAA-AAATTGT--GG-A-AAGAAAAGCTT * * * * * * ** * * * * 1388346 TCCATGTAAACGAAAATCATTAGTACCATTTATCCTAATG-AGGAGAATGTGTTTATAGTGCCTA 61 TTCTTGCAAAC-CAAATCATCAATGTCATGTATCCTAATGAAGG-GAATGTGTTTATGGTTCCCA * * * * * * * 1388410 ATCATAAAATGAAAGAAG-ATCATTACTAGAATCCA 124 ATCTTGAAA-GAATGGAGAATCATTACGAGCATCGA * * * * * 1388445 TGTTTGTCTCA--TACGAGATACGAGCTTCGACTT-TA-CAAAAATTG-GTGAGAA-AAAAGCCT 1 TGTTTGTCTTATTTAAGAGAT--GAACTTTGA-TTCTATCAAAAATTGTG-GA-AAGAAAAGCTT * * * * * * * * * 1388504 TTCTTACAAAGGCAAAACATCCACATGACA--TATTCTAAT-AAGAAGACTATGTTTATGGTGCC 61 TTCTTGCAAA-CCAAATCAT-CA-ATGTCATGTATCCTAATGAAG-GGAATGTGTTTATGGTTCC * * * * * * * 1388566 AAATCCTGAAAAGAATGG-GAATTAGTATGAGTATTC-T 122 CAATCTTG-AAAGAATGGAGAATCATTACGAGCA-TCGA * *** * * * 1388603 TCTTTGTCTTATTTGAA-AGGCAAACTTTGATTTTATCAAAAATGGTGGAAAGGAAAGCTTTTCT 1 TGTTTGTCTTATTT-AAGAGATGAACTTTGATTCTATCAAAAATTGTGGAAAGAAAAGCTTTTCT * * * 1388667 TGCAACACCAAAGCATTAATGTCATGTATCCTAATGAAAGGAATGTGTTT-TGGCTTCCCAATCT 65 TGCAA-ACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTATGG-TTCCCAATCT * * * * * 1388731 TGCAATGAATGGAGACT-ATTATGAGAATCGT 128 TG-AAAGAATGGAGAATCATTACGAGCATCGA * * * * *** * * * 1388762 TGCTTGTGTTTTTTAAGGGATGAACTTTGAGTT-TAAGGAAAATAG-GGCAAGGAAAAGATTTTC 1 TGTTTGTCTTATTTAAGAGATGAACTTTGA-TTCTATCAAAAATTGTGG-AAAGAAAAGCTTTTC * ** * * * * * * 1388825 ATGCAAAAGAAAATCATCAAT-ACTATTTATCCTAAT-AAGGAGAAAGTGTCTT-TAGTGCTCAA 64 TTGC-AAACCAAATCATCAATGTC-ATGTATCCTAATGAAGG-GAATGTGT-TTATGGTTCCCAA *** * * * * 1388887 TCACCAAATAAATGAAG-ATCATTACTAGAATCGA 125 TCTTGAAA-GAATGGAGAATCATTACGAGCATCGA * * * * * * * 1388921 TGTTTGTCTCATTTGAGACATGAACATAGACTT-TA-CAAAAATTAGT-CAAA-AAAATGCCTTT 1 TGTTTGTCTTATTTAAGAGATGAACTTTGA-TTCTATCAAAAATT-GTGGAAAGAAAA-GCTTTT * * * *** * * * * 1388982 CTTGCAAACCCAAAACATCAGTATCATGTATCCTAATGAGAAGCCCA--TGTTTGTGATGCCTAA 63 CTTGCAAA-CCAAATCATCAATGTCATGTATCCTAAT--GAAGGGAATGTGTTTATGGTTCCCAA * * * * * 1389045 TCTTGAAATGAATAGG-G-ATTACTATGA-CTGTTC-T 125 TCTTGAAA-GAAT-GGAGAATCATTACGAGC--ATCGA * * * * * * * * 1389079 TGTTTATATAATTTAAGAGGTAAACTTTGATTCTATCAAAAACTGTGAAAAGAAAAGCTTTTTTT 1 TGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAATTGTGGAAAGAAAAGCTTTTCTT * * * * * 1389144 GGCCACACCAAAGCATCAATGTCATGTATCTTAATGAAGGGATTGTGTTTTTGGTTCCCAATCTT 66 -G-CAAACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTATGGTTCCCAATCTT * * 1389209 GAAAGAATGGAGAAT-GTTATGAGCATCGA 129 GAAAGAATGGAGAATCATTACGAGCATCGA * * * * ** * 1389238 TGCTTGTCTTATTTATGGGATGAACTTTGATTTTAT-AGAAAATTG-GGTAAAGAAAAAAATTTA 1 TGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCA-AAAATTGTGG-AAAG-AAAAGCTTTT * ** * * * * ** * * 1389301 CCTGCAAAAAAAATCCTCAATGTCGTTTATCTTAATG-AGGAGAATGTGTTTATAATGCCTAATC 63 CTTGCAAACCAAATCATCAATGTCATGTATCCTAATGAAGG-GAATGTGTTTATGGTTCCCAATC *** * * * * * 1389365 ACCAAATAAATGTAG-ATCATTACTAGAATCCA 127 TTGAAA-GAATGGAGAATCATTACGAGCATCGA * * * * * * 1389397 TGTTTATCTTATTTGAG-GCATGAACTTAGACTCTAT-AAAAATTAGT-CAAA-AAAATGCCTTT 1 TGTTTGTCTTATTTAAGAG-ATGAACTTTGATTCTATCAAAAATT-GTGGAAAGAAAA-GCTTTT * * * ** * * * * 1389458 CTTGCAAACCGAAAACATCAATATCGTGTATCCTAATG-AGAAAACTATGTTTATGATACCTAAT 63 CTTGCAAACC-AAATCATCAATGTCATGTATCCTAATGAAGGGAA-TGTGTTTATGGTTCCCAAT * * * * * 1389522 CTTGAAAAGAATGG-GGATTAGTATGA-CTATTC-T 126 CTTG-AAAGAATGGAGAATCATTACGAGC-A-TCGA * * * * ** * 1389555 TATTTATATAATTTAAGAGACAAACTTTGATTCTATCAAAAACTGTGGAAAGAAAAGCTTTTCTT 1 TGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAATTGTGGAAAGAAAAGCTTTTCTT * * * * * * 1389620 GCGACACCAAAGCATTAGTGTCATGTATCCTAATGAAAGGAATGTGTTT-TGGCTTCCCAATCCT 66 GC-AAACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTATGG-TTCCCAATCTT * * * 1389684 GCAATGAATGGAGACT-ATTACGAGAATCGA 129 G-AAAGAATGGAGAATCATTACGAGCATCGA * * * * *** * * * * 1389714 TGCTTGTGTTTTTTAAGGGATGAACTTTGAGTT-TAAGGAAAATAG-GGCAAGGAGAAGATTTT- 1 TGTTTGTCTTATTTAAGAGATGAACTTTGA-TTCTATCAAAAATTGTGG-AAAGAAAAGCTTTTC ** * * * * * * * 1389776 TATGCAAAAGAAAATCATCAATATCATTTATCTTAAT-AAGGAGAAAGTGTTTTTAGTGCCCAAT 64 T-TGC-AAACCAAATCATCAATGTCATGTATCCTAATGAAGG-GAATGTGTTTATGGTTCCCAAT *** * * * * * 1389840 CACCAAATAAATGAAG-ATCATTACTAGAATCCA 126 CTTGAAA-GAATGGAGAATCATTACGAGCATCGA * * * ** * * 1389873 TGTTTGTCTCATTTGAGACATGAACTTAAACTTC-A-CAAAAATTACT-GAAA-AAAATGCCTTT 1 TGTTTGTCTTATTTAAGAGATGAACTTTGA-TTCTATCAAAAATT-GTGGAAAGAAAA-GCTTTT * * * * *** * * * * 1389934 CTTCCAAACCCAAAACATCAGTATCATGTATCCTAATGAGAAGCCCA--TATTTATGATGCCTAA 63 CTTGCAAA-CCAAATCATCAATGTCATGTATCCTAAT--GAAGGGAATGTGTTTATGGTTCCCAA * * * * * 1389997 TCTTGAAAAGAATAGG-GACT-AGTATGA-CTGTTC-T 125 TCTTG-AAAGAAT-GGAGAATCATTACGAGC--ATCGA * * * * * * 1390031 TGTTTG-CATAATTTAAGAGATAAACTTTGATTTTATCAAAAACTATGGAAAGAAAA-CCTTTCT 1 TGTTTGTC-TTATTTAAGAGATGAACTTTGATTCTATCAAAAATTGTGGAAAGAAAAGCTTTTCT * * * * * * 1390094 TGCGACACCAAAGCATCAATGTCATGTATCTTAATGAAGGTATTGTGTTTTTGGTTCCCAATCTT 65 TGC-AAACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTATGGTTCCCAATCTT * 1390159 GAAAGAATGGAGAATGC--TACGAGAATCGA 129 GAAAGAATGGAGAAT-CATTACGAGCATCGA * * * * * * 1390188 TGCTTGTCTTATTTATAG-GATGAACTTTGATTTTATGAAAAATAG-GGCAAAG-AAAGATTTCC 1 TGTTTGTCTTATTTA-AGAGATGAACTTTGATTCTATCAAAAATTGTGG-AAAGAAAAGCTTTTC * ** * * * * * * * * 1390250 TAGCAAAAAAAATCCTCAATATTATTTATCCTAAAG-AGGAGAATATGTTTATAGTGT-CTAATC 64 TTGCAAACCAAATCATCAATGTCATGTATCCTAATGAAGG-GAATGTGTTTATGGT-TCCCAATC *** * * * * * 1390313 ACAAAATAAGTGAAG-ATCTTTA-GTAGAATCCA 127 TTGAAAGAA-TGGAGAATCATTACG-AGCATCGA * * * * * * 1390345 TGTTTGTCTCATTTGAG-GCACGAACTTAGACTT-TA-CAAAAATTGGTGGGAAA-AATA-CCTT 1 TGTTTGTCTTATTTAAGAG-ATGAACTTTGA-TTCTATCAAAAATT-GT-GGAAAGAAAAGCTTT * * * * ** * * * 1390405 TCTGGCAAAACCAAAACATCAATATCAAGTATCCTAATG-AGAAAACAG-GTTTATGGTGCCTAA 62 TCTTGC-AAACCAAATCATCAATGTCATGTATCCTAATGAAGGGAA-TGTGTTTATGGTTCCCAA * * * * * 1390468 TCTTGGAAAGAATGG-GGATTAGTATGA-CTATTC-T 125 TCTT-GAAAGAATGGAGAATCATTACGAGC-A-TCGA * * * * * 1390502 TATTTGTATTATTTAAGAGATAAACTTTGATTCTATCAAAAA-CGATAG-AAGAAAAGGCTTTTC 1 TGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAATTG-TGGAAAGAAAA-GCTTTTC * * * * 1390565 TTGCAACACCAAAGCATCAATGTCGTGTATCCTAATAAAGGAAATGTGTTT-TGGCTTCCCAATC 64 TTGCAA-ACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTATGG-TTCCCAATC * * * 1390629 TTGAAAATAATGGAG--TCTATTATGAG-AACTGA 127 TTG-AAAGAATGGAGAATC-ATTACGAGCATC-GA * * * * * * 1390661 TGCTTATCTTATTTAAGGGATTAACTTCGATT-T-T-AAGAAA-TGTAGGGCATAA-AAAAGATT 1 TGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAA-AAATTGT--GG-A-AAGAAAAGCTT * * * * * * ** * * * * 1390721 TCCATGTAAACGAAAATCATTAGTACCATTTATCCTAATG-AGGAGAATGTGTTTATAGTGCCTA 61 TTCTTGCAAAC-CAAATCATCAATGTCATGTATCCTAATGAAGG-GAATGTGTTTATGGTTCCCA * * * * * * * 1390785 ATCATAAAATGAAAGAAG-ATCATTACTAGAATCCA 124 ATCTTGAAA-GAATGGAGAATCATTACGAGCATCGA * * * * * 1390820 TGTTTGTCTCA--TACGAGATACGAGCTTCGACTT-TA-CAAAAATTG-GTGAGAA-AAAAGCCT 1 TGTTTGTCTTATTTAAGAGAT--GAACTTTGA-TTCTATCAAAAATTGTG-GA-AAGAAAAGCTT * * * * * * * * * 1390879 TTCTTACAAAGGCAAAACATCCACATGACA--TATTCTAAT-AAGAAGACTATGTTTATGGTGCC 61 TTCTTGCAAA-CCAAATCAT-CA-ATGTCATGTATCCTAATGAAG-GGAATGTGTTTATGGTTCC * * * * * * * 1390941 AAATCCTGAAAAGAATGG-GAATTAGTATGAGTATTC-T 122 CAATCTTG-AAAGAATGGAGAATCATTACGAGCA-TCGA * *** * * * 1390978 TCTTTGTCTTATTTGAA-AGGCAAACTTTGATTTTATCAAAAATGGTGGAAAGGAAAGCTTTTCT 1 TGTTTGTCTTATTT-AAGAGATGAACTTTGATTCTATCAAAAATTGTGGAAAGAAAAGCTTTTCT * * * 1391042 TGCAACACCAAAGCATTAATGTCATGTATCCTAATGAAAGGAATGTGTTT-TGGCTTCCCAATCT 65 TGCAA-ACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTATGG-TTCCCAATCT * * * * * 1391106 TGCAATGAATGGAGACT-ATTATGAGAATCGT 128 TG-AAAGAATGGAGAATCATTACGAGCATCGA * * * * *** * * * 1391137 TGCTTGTGTTTTTTAAGGGATGAACTTTGAGTT-TAAGGAAAATAG-GGCAAGGAAAAGATTTTC 1 TGTTTGTCTTATTTAAGAGATGAACTTTGA-TTCTATCAAAAATTGTGG-AAAGAAAAGCTTTTC * ** * * * * * * 1391200 ATGCAAAAGAAAATCATCAATATCATTTATCCTAAT-AAGGAGAAAGTGTTTTTAGTGCCCAATC 64 TTGC-AAACCAAATCATCAATGTCATGTATCCTAATGAAGG-GAATGTGTTTATGGTTCCCAATC *** * * * * 1391264 ACCAAATAAATGAAG-ATCATTACAAGAATTC-A 127 TTGAAA-GAATGGAGAATCATTACGAGCA-TCGA * * * * * 1391296 TGTTTGTCTCATTTGAGACATGAACTTAT-ACTT-TA-CAAAAATTAGT-CAAA-AAAATGCCTT 1 TGTTTGTCTTATTTAAGAGATGAACTT-TGA-TTCTATCAAAAATT-GTGGAAAGAAAA-GCTTT * * * *** * * * * 1391356 TCTTGCAAACCCAAAACATCAGTATCATGTATCCTAATGAGAAGCCCA--TGTTTGTGATGCCTA 62 TCTTGCAAA-CCAAATCATCAATGTCATGTATCCTAAT--GAAGGGAATGTGTTTATGGTTCCCA * * * * * 1391419 ATCTTGAAAAGAATAGG-G-ATTACTATGA-CTGTTC-T 124 ATCTTG-AAAGAAT-GGAGAATCATTACGAGC--ATCGA * * * * 1391454 TGTTTGTATAATTTAAGAGATAAACTTTGATTCTATCAAAAACTGTGGAAAGAAAAGCTTTTCTT 1 TGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAATTGTGGAAAGAAAAGCTTTTCTT * * * * * 1391519 GTGACACCAAATCATCAATGTCATGTATCTTAATGAAGGGATTGTGTTTTTTGGTTCCCAATCTT 66 G-CAAACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTATGGTTCCCAATCTT * 1391584 GAAAGAATGGAGAAT-GTTACGAGCATCGA 129 GAAAGAATGGAGAATCATTACGAGCATCGA * * * * ** ** * 1391613 TGCTTGTCTTATTTATGGGATGAACTTTGATTTTATGGAAAATTG-GGTAAAGAAAAAAATTTAC 1 TGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAATTGTGG-AAAG-AAAAGCTTTTC * * * * * ** ** * 1391677 CTGCAAA-AAAAGTCCTCAATGTCGTTTATCCTAATG-AGGAGAATGTGTTTATAATGACTAATC 64 TTGCAAACCAAA-TCATCAATGTCATGTATCCTAATGAAGG-GAATGTGTTTATGGTTCCCAATC *** * * * * * 1391740 ACCAAATGAAAGTAG-ATCATTACTAGAATCCA 127 TTGAAA-GAATGGAGAATCATTACGAGCATCGA * * * * * 1391772 TGTTTGTCTTATTTGAG-GCATGAACTTAGACTCTA-CAAAAATTAGT-CAAA-AAAATGCCTTT 1 TGTTTGTCTTATTTAAGAG-ATGAACTTTGATTCTATCAAAAATT-GTGGAAAGAAAA-GCTTTT * * * ** ** * * * * 1391833 CTTGCAAACCCAAAACATCAGTATTGTGTATCCTAATG-AGAAAACTATGTTTATGATACCTAAT 63 CTTGCAAA-CCAAATCATCAATGTCATGTATCCTAATGAAGGGAA-TGTGTTTATGGTTCCCAAT * * * * ** 1391897 CTTGAAAAGAATGG-GGATTAGTATGA-CTAT-TT 126 CTTG-AAAGAATGGAGAATCATTACGAGC-ATCGA * * * ** * * 1391929 TATTTGTATAATTTAAGAGACAAACTTTGATTCTATCAAAAACTGTGGAAATAAAAGCTTTTCTT 1 TGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAATTGTGGAAAGAAAAGCTTTTCTT * * * *** * 1391994 GTGACACCAAAGC-TTTGTGTCATGTATCCTAATGAAAGGAATGTGTTT-TGGCTTCCCAATCTT 66 G-CAAACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTATGG-TTCCCAATCTT * * 1392057 GCAATGAATGGAGACT-ATTACGA-CAATCGA 129 G-AAAGAATGGAGAATCATTACGAGC-ATCGA * * * * * *** * * * 1392087 TGCTTGTGTTTTTTGAGGGATGAACTTTGAGTT-TAAGGAAAATAG-GGCAAGGAAAAGATTTTC 1 TGTTTGTCTTATTTAAGAGATGAACTTTGA-TTCTATCAAAAATTGTGG-AAAGAAAAGCTTTTC * ** * * * * * * 1392150 ATGCAAAAGAAAATCATCAATATCATTTATCCTAAT-AAGGAGAAAGTGTTTTTAGTGCCCAATC 64 TTGC-AAACCAAATCATCAATGTCATGTATCCTAATGAAGG-GAATGTGTTTATGGTTCCCAATC *** * * * * * 1392214 ACCAAATAAATGAAG-ATCATTACTAGAATCCA 127 TTGAAA-GAATGGAGAATCATTACGAGCATCGA * * * ** * * 1392246 TGTTTGTCTCATTTGAGACATGAACTTAAACTT-TA-CAAAAATTAGT-CAAA-AAAATGCCTTT 1 TGTTTGTCTTATTTAAGAGATGAACTTTGA-TTCTATCAAAAATT-GTGGAAAGAAAA-GCTTTT * * *** * * 1392307 CTTGCAAACCCAAAACATCAATATCATGTATCCTAATGACAAGCCCA--TATTTAT-G--CCTAA 63 CTTGCAAA-CCAAATCATCAATGTCATGTATCCTAATG--AAGGGAATGTGTTTATGGTTCCCAA * * * * * 1392367 TCTTGAAATGAATAGG-G-ATTACTATGA-CTGTTC-T 125 TCTTGAAA-GAAT-GGAGAATCATTACGAGC--ATCGA * * * * 1392401 TGTTTGTATAATTTAAGAGATAAACTTTGATTCTATCAAAAACTGTGGAAAGAAAAGCTTTTCTT 1 TGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAATTGTGGAAAGAAAAGCTTTTCTT * * * * * * * 1392466 GTGACACCAAAGCATCATTGTCATGTATCTTAATGAAGGGATTGTGTTTTTTGGTTCCCAATCTT 66 G-CAAACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTATGGTTCCCAATCTT * 1392531 GAAAGAATGGAGAAT-GTTACGAGCATCGA 129 GAAAGAATGGAGAATCATTACGAGCATCGA * * * * ** ** * 1392560 TGCTTGTCTTATTTATGGGATGAACTTTGATTTTATGGAAAATTG-GGTAAAGAAAAAAATTTAC 1 TGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAATTGTGG-AAAG-AAAAGCTTTTC * * * * * ** * * 1392624 CTGCAAA-AAAAGTCCTCAATGTCGTTTATCCTAATG-AGGAGAATGTGTTTATAATGCCTAATC 64 TTGCAAACCAAA-TCATCAATGTCATGTATCCTAATGAAGG-GAATGTGTTTATGGTTCCCAATC *** * * * * * 1392687 ACCAATGAATGTAG-ATCATTACTAGAATCCA 127 TTGAAAGAATGGAGAATCATTACGAGCATCGA ** * * * * * * 1392718 TGTTTGTCTTATTTGCG-GCACGAACTTAGACTCTA-CATAAATTAGT-CAAA-AAAATGCCTTT 1 TGTTTGTCTTATTTAAGAG-ATGAACTTTGATTCTATCAAAAATT-GTGGAAAGAAAA-GCTTTT * * * * ** * * * * 1392779 CTTGCAAACCCAAAACATCAGTATCGTGTATCCTAATG-AGAAAAGTATGTTTATGATACCTAAT 63 CTTGCAAA-CCAAATCATCAATGTCATGTATCCTAATGAAGGGAA-TGTGTTTATGGTTCCCAAT * * * * * 1392843 CTTGAAAAGAATGG-GGATTAGTATGA-CTATTC-T 126 CTTG-AAAGAATGGAGAATCATTACGAGC-A-TCGA * * * ** * * * 1392876 TATTTGTATAATTTAAGAGACAAACTTTGATTCTATCAAAAACTATGGAAAGAAAAGCATTTCTT 1 TGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAATTGTGGAAAGAAAAGCTTTTCTT * * * * * 1392941 GCAACACCAAAGCATCAATGTCATGTATCCTAAGGAAGGGATTGTGTTTTTGGTTCCCAATCTGG 66 GCAA-ACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTATGGTTCCCAATCTTG * * * * 1393006 AAAGAATGGAGAAT-GTTACAAGAACCGA 130 AAAGAATGGAGAATCATTACGAGCATCGA * * * * * 1393034 TGTTTGTCTTATTTAAGAGATGAACTTTGATTTTATGAAAAATAG-GGCAAAGACAAG-ATTTC- 1 TGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAATTGTGG-AAAGAAAAGCTTTTCT * ** * * * * * ** * 1393096 -CCAAAAAAAAATCCTCAATATCATTTATCCTAATG-AGGACAATGTGTCTATAATGT-CTAATC 65 TGC-AAACCAAATCATCAATGTCATGTATCCTAATGAAGG-GAATGTGTTTATGGT-TCCCAATC *** * * * * * 1393158 ACAAAATAAGTGAAG-ATCTTTA-GTAGAATCTA 127 TTGAAAGAA-TGGAGAATCATTACG-AGCATCGA * * * * * * 1393190 TGTTTGTCTCATTTGAG-GCACGAACTTAGAATT-TA-CAAAAATTGGTGGCAAA-AATA-CCTT 1 TGTTTGTCTTATTTAAGAG-ATGAACTTTG-ATTCTATCAAAAATT-GTGG-AAAGAAAAGCTTT * * * * * * * 1393250 TCTGGTG-AAACCAAAACATCAATATCGTGTATCCTAATG-A-GAAGATCATGTTTATGGTGCCT 62 TCT--TGCAAACCAAATCATCAATGTCATGTATCCTAATGAAGGGA-AT-GTGTTTATGGTTCCC * * * * * * * 1393312 AATCCTGAAAAGGATGGTG-ATTAGTATGA-CTATTC-T 123 AATCTTG-AAAGAATGGAGAATCATTACGAGC-A-TCGA * ** * * * ** 1393348 TGTTTGTATTATTTAAGAGACAAATTTTGATTATATCAAAAATGGTGGAAAGAAGGGCTTTTCTT 1 TGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAATTGTGGAAAGAAAAGCTTTTCTT * * * * ** * 1393413 GCAACACCAAAGCTTTAATGTCATGTATCCTAATAAAGAAAATGTGTTT-TGGTTTCCTAATCTT 66 GCAA-ACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTATGG-TTCCCAATCTT * * * 1393477 GAAAAGAATGGAGACT-ATTATGAG-AACTGA 129 G-AAAGAATGGAGAATCATTACGAGCATC-GA * * * * * * * ** * ** * 1393507 TGCTTATCTTGTTGAAG-GATTAACTTCGATTTTAAGAAAAATAG-GGTAAAGAAAAAATTTTCG 1 TGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAATTGTGG-AAAGAAAAGCTTTTCT ** * * * * * * * 1393570 TGCAAAAGAAAGTCAT-AAGTTTCATTTATCCTAATG-AGAAGAATATGTTTATAGTGCCTAAT- 65 TGCAAACCAAA-TCATCAA-TGTCATGTATCCTAATGAAG-GGAATGTGTTTATGGTTCCCAATC * * * * * 1393632 TATAAAATGAA-AGACG-ATAATTACTA-CAATCCA 127 T-TGAAA-GAATGGA-GAATCATTACGAGC-ATCGA * * * * 1393665 TGTTTGTCTCATTT--GAGATCTAAGCTTTGACTT-TA-CACAAATTG-GTGAGAA-AAAAGCCT 1 TGTTTGTCTTATTTAAGAGAT-GAA-CTTTGA-TTCTATCAAAAATTGTG-GA-AAGAAAAGCTT * * * * * ** ** * * * 1393724 TTCTTGTGAAGCCAAAGCATTAATAG-GATGTATTTTAATG-AGAAAACTATGTTTATGGTGCCT 61 TTCTTG-CAAACCAAATCATCAAT-GTCATGTATCCTAATGAAGGGAA-TGTGTTTATGGTTCCC * * * * * * 1393787 AATCCTGAAATGAATGG-GAATTAGTATGAGTATTC-T 123 AATCTTGAAA-GAATGGAGAATCATTACGAGCA-TCGA * * * * * 1393823 TGTTTTTCTTATTTAAAAGATAAACTTTGATTCTATCAAAAATGGTGAAAAGAAAAGCTTTTCTT 1 TGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAATTGTGGAAAGAAAAGCTTTTCTT * * * 1393888 GCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTCTTT-TGGCTTCCCAATCTT 66 GC-AAACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTATGG-TTCCCAATCTT * * * * 1393952 GGAAAGAATGAAGACT-GTTACGAGAATCGA 129 -GAAAGAATGGAGAATCATTACGAGCATCGA * 1393982 TGCTTGTGTC-T-TTTAAGGGATGAACTTTGA 1 TG-TT-TGTCTTATTTAAGAGATGAACTTTGA 1394012 GTTTAAGGAA Statistics Matches: 5390, Mismatches: 1687, Indels: 1096 0.66 0.21 0.13 Matches are distributed among these distances: 154 8 0.00 155 115 0.02 156 279 0.05 157 638 0.12 158 1905 0.35 159 2054 0.38 160 348 0.06 161 43 0.01 ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32 Consensus pattern (158 bp): TGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAATTGTGGAAAGAAAAGCTTTTCTT GCAAACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTATGGTTCCCAATCTTGA AAGAATGGAGAATCATTACGAGCATCGA Found at i:1398031 original size:33 final size:33 Alignment explanation
Indices: 1397986--1398050 Score: 87 Period size: 33 Copynumber: 2.0 Consensus size: 33 1397976 TTTGAAGCAA * * 1397986 TGTATCAGTACAATTCATCATGTATTGATACAT 1 TGTATCAGTACAATGCATCATGTATCGATACAT * 1398019 TGTATC-GATACAATGCGTCATGTATCGATACA 1 TGTATCAG-TACAATGCATCATGTATCGATACA 1398051 AACAGTGGTA Statistics Matches: 28, Mismatches: 3, Indels: 2 0.85 0.09 0.06 Matches are distributed among these distances: 32 1 0.04 33 27 0.96 ACGTcount: A:0.32, C:0.17, G:0.15, T:0.35 Consensus pattern (33 bp): TGTATCAGTACAATGCATCATGTATCGATACAT Found at i:1398105 original size:20 final size:19 Alignment explanation
Indices: 1398080--1398117 Score: 58 Period size: 20 Copynumber: 1.9 Consensus size: 19 1398070 CTGCCAGTTT 1398080 CATGTATCAATACAATTGTC 1 CATGTATCAATAC-ATTGTC * 1398100 CATGTATCGATACATTGT 1 CATGTATCAATACATTGT 1398118 ATTGATACAG Statistics Matches: 17, Mismatches: 1, Indels: 1 0.89 0.05 0.05 Matches are distributed among these distances: 19 5 0.29 20 12 0.71 ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37 Consensus pattern (19 bp): CATGTATCAATACATTGTC Found at i:1398522 original size:20 final size:19 Alignment explanation
Indices: 1398499--1398571 Score: 78 Period size: 20 Copynumber: 3.7 Consensus size: 19 1398489 TGCACCTAGA * 1398499 TGTATCGATACAT-TATGCTT 1 TGTATCGATACATGT-T-CAT 1398519 TGTATCGATACATGTTCAT 1 TGTATCGATACATGTTCAT * 1398538 TGTATCGATACATAG-ACAAT 1 TGTATCGATACAT-GTTC-AT 1398558 TGTATCGATACATG 1 TGTATCGATACATG 1398572 AAACTAGCAG Statistics Matches: 48, Mismatches: 2, Indels: 7 0.84 0.04 0.12 Matches are distributed among these distances: 19 17 0.35 20 30 0.62 21 1 0.02 ACGTcount: A:0.30, C:0.15, G:0.16, T:0.38 Consensus pattern (19 bp): TGTATCGATACATGTTCAT Found at i:1398643 original size:33 final size:33 Alignment explanation
Indices: 1398601--1398663 Score: 101 Period size: 33 Copynumber: 1.9 Consensus size: 33 1398591 TACCACTATT * 1398601 TGTATCGATACATGGT-ACATTGTATCGATATAA 1 TGTATCGATACATGATGA-ATTGTATCGATATAA 1398634 TGTATCGATACATGATGAATTGTATCGATA 1 TGTATCGATACATGATGAATTGTATCGATA 1398664 CATTGCTTCT Statistics Matches: 28, Mismatches: 1, Indels: 2 0.90 0.03 0.06 Matches are distributed among these distances: 33 27 0.96 34 1 0.04 ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37 Consensus pattern (33 bp): TGTATCGATACATGATGAATTGTATCGATATAA Found at i:1404968 original size:20 final size:20 Alignment explanation
Indices: 1404930--1404969 Score: 55 Period size: 20 Copynumber: 1.9 Consensus size: 20 1404920 TTACAAATTT 1404930 CTTCATTTTCACTTCAAAATA 1 CTTCATTTTCAC-TCAAAATA 1404951 CTTCATTTTTCA-TCAAAAT 1 CTTCA-TTTTCACTCAAAAT 1404970 TATGAACAAA Statistics Matches: 18, Mismatches: 0, Indels: 3 0.86 0.00 0.14 Matches are distributed among these distances: 20 7 0.39 21 5 0.28 22 6 0.33 ACGTcount: A:0.33, C:0.23, G:0.00, T:0.45 Consensus pattern (20 bp): CTTCATTTTCACTCAAAATA Found at i:1408821 original size:425 final size:423 Alignment explanation
Indices: 1408032--1408855 Score: 1028 Period size: 425 Copynumber: 1.9 Consensus size: 423 1408022 TTTTATAGAT * * ** * * 1408032 AAACTTTGATTCTATCCAAAATGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGC 1 AAACTTTAATTCCATCCAAAATGGCAGAAAGAAAACCTTTTCTTGTGACACCAAAACATCAATGC ** ** ** 1408097 CTTGTATCCTAATAAAGGGAATGTGTTTTGGCCTCCCAATCTTGAAAAGAATGGAGCCTGTTACA 66 CTCATATCCTAATAAAGGGAATGTGTTTTGGCCTCCCAATCTTGAAAAGAATGGAAACTACTACA * * * ** 1408162 GGAATTAATGTTATCTTATTTAAGAGATAAAGTTTGATTTTATGGAAATTAAGGCAAAGAAAAGA 131 GGAATCAATGTTACCTTATTTAAGAGATAAACTTTGATTTTAAAGAAA-TAAGGCAAAGAAAAGA * * ** * 1408227 TTTCCAAGCAAAATAAAATCGCCAATATTTTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT 195 TTTCCAAGCAAAAGAAAATCACCAATATCATTTATCCTAATGAAGAGAATGTGTTTATAGTGCCT * * * 1408292 AATTACAAAATGAGTAAAAATCAATAGTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAC 260 AATCACAAAATGAATAAAAATCAATAGTAGAATCCATGTTTGTCTCATTTAAGGCACAAACTTAC * * * * 1408357 ACTTTACAAAAATTGGTGAGAAAAATGCCTTTTTTGCAAAATCGAAAC-ATCAATATCGTGTATT 325 ACTTTACAAAAATTAGTGAGAAAAATGCCTTTCTTGCAAAA-CCAAACTATCAATATCGTGTATC * 1408421 GTAATGAGAAAACCATGATGTATTATTTAAGAGAC 389 CTAATGAGAAAACCATGATGTATTATTTAAGAGAC * * * * * * 1408456 AAACTTTAATTCCATCGAAAATGGCAGAAAGAAAACCTTTTCTTGTTACTCCAAAACCTTAATGT 1 AAACTTTAATTCCATCCAAAATGGCAGAAAGAAAACCTTTTCTTGTGACACCAAAACATCAATGC * * * * 1408521 CTCATATCCTAATAAAGGGATTGTGTTTTGGCTTCCCAATCTTGAAAATAATGGAAACTACTA-T 66 CTCATATCCTAATAAAGGGAATGTGTTTTGGCCTCCCAATCTTGAAAAGAATGGAAACTACTACA * * * * * 1408585 GAGAATCGATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAAGATAA-AAGGGCAATGAAA 131 G-GAATCAATG-TTACCTTATTTAAGAGATAAACTTTGATTTTAAAGA-AATAA-GGCAAAGAAA * * 1408649 AGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAAGAGAATGTGTTTATAGTG 192 AGATTTCCAAGCAAAAGAAAATCACCAATATCATTTATCCTAATGAAGAGAATGTGTTTATAGTG * * * * * * 1408714 TCTAATCATAAAATGAATGAAGATC-ATTGCTAGAATCCGTGTTTGTCTCATTTAAGGCACGAAA 257 CCTAATCACAAAATGAATAAAAATCAATAG-TAGAATCCATGTTTGTCTCATTTAAGGCAC-AAA * * * * 1408778 -TTAGACTTTACCAAAATTAGTGGGAGAAATGCCTTTCTTGCAAAACCAAACTATCAATATCGTG 320 CTTACACTTTACAAAAATTAGTGAGAAAAATGCCTTTCTTGCAAAACCAAACTATCAATATCGTG 1408842 TATCCTAATGAGAA 385 TATCCTAATGAGAA 1408856 GACTATGTTC Statistics Matches: 336, Mismatches: 57, Indels: 13 0.83 0.14 0.03 Matches are distributed among these distances: 423 1 0.00 424 124 0.37 425 206 0.61 426 5 0.01 ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31 Consensus pattern (423 bp): AAACTTTAATTCCATCCAAAATGGCAGAAAGAAAACCTTTTCTTGTGACACCAAAACATCAATGC CTCATATCCTAATAAAGGGAATGTGTTTTGGCCTCCCAATCTTGAAAAGAATGGAAACTACTACA GGAATCAATGTTACCTTATTTAAGAGATAAACTTTGATTTTAAAGAAATAAGGCAAAGAAAAGAT TTCCAAGCAAAAGAAAATCACCAATATCATTTATCCTAATGAAGAGAATGTGTTTATAGTGCCTA ATCACAAAATGAATAAAAATCAATAGTAGAATCCATGTTTGTCTCATTTAAGGCACAAACTTACA CTTTACAAAAATTAGTGAGAAAAATGCCTTTCTTGCAAAACCAAACTATCAATATCGTGTATCCT AATGAGAAAACCATGATGTATTATTTAAGAGAC Found at i:1410981 original size:954 final size:937 Alignment explanation
Indices: 1408542--1411075 Score: 2824 Period size: 954 Copynumber: 2.7 Consensus size: 937 1408532 ATAAAGGGAT * * * * * ** * * ** 1408542 TGTGTTTTGGCTTCCCAATCTTGAAAATAATGGAAACTACTATGAGAA-TCGATGCTTGCCTTAT 1 TGTGTTTTAGCTTCCAAATCTTGAAAAGAATCGATACTGTTACGAGAACT-GAAGCTTATCTTAT * * 1408606 T-TAAGGGATGAACTTTGATTTTAAAGATAAA-AGGGCAATGAAAAGATTTCCATGCAAAAGAAA 65 TAT-AGGGATGAACTTTGATTTTAAGGA-AAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA * 1408669 ATCATCAATATCATTTATCCTAATGA-AGAGAATGTGTTTATAGTGTCTAATCATAAAATGAATG 128 ATCATCAATATCATTTATCCTAATGAGA-AGAATGTGTTTATAGTGCCTAATCATAAAAT-AATG * * 1408733 AAGATC-ATTGCTAGAATCCGTGTTTGTCTCATTTAAGGCACGAAATTAGACTTTACCAAAATTA 191 AAGATCAATAG-TAGAATCCGTGTTTGTCTCATTTAAGGCACGAAATTAGACTTTACAAAAATT- * * * * * * 1408797 GTGGGAGAAATGCCTTTCTTGCAAAACCAAACTATCAATATCGTGTATCCTAATGAGAAGACTAT 254 GTGGGAAAAATGCCTTTCTTGCGAAACAAAAC-ATTAATATCGTGTATCCTAATAAGAAGACCAT * * * * 1408862 GTTCAA-GGTGCCTAATCTTTAAAGGAATAGTGATTAGTATGAGTATTCATGTTTGTCTTATTT- 318 GTT-AATGGTGCCTAATCTTGAAA-GAATAGGGATTAGTATGACTATTCTTGTTTG-CTTATTTA * * * * * 1408925 TAGAGACAAACATTGATTCTATCAAAAACGATGGAAAGAAAACCTTTTCTAGCAACACCAAAGCA 380 T-GAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAACTTTTCTTGCGACACCAAAGCA * * * * 1408990 TCAATGTCATGTATCCTAATG-AAGAGAATGTGGTTTGGCTTCCTAACCTGGAAAAGAATGGAGA 444 TCAATGTCATGTATCCTAATGAAAG-GAATGTGTTTTGGCTTCCAAATCTTGAAAAGAATGGAGA * * * * ** 1409054 CTGTTACAAGAATCGATGCTTGTGTTATTTAGGGGATAAACTTCAATTTT-AGGA-A-A----AT 508 CTGTTACAAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAGATAGGGCA- * * * * 1409112 AGG-G-C-A-TTTCGA-GCAAAAGAAAATTCTCAATATCATTTATCCTAATGAGGAGAATGTGTT 572 AGGAGACGATTTTC-ATGCAAAAAAAAAATATCAATATCATTTATCCTAATGAAGAGAATGTGTT * * * * * 1409172 TATATTGCCTAATCACAAAATAAGTGAAGATCAATAGTAGAATCCATGTTTGTCTCATTTGAGGC 636 TATAGTGCTTAATCACAAAATAAGCGAAAATCAATAGTAGAATCCATGTTTATCTCATTTGAGGC * * * * * * * * * * 1409237 ACGAACTTAGAGTTTATAGAAATTTGTGGGAAAAATGTCTTTCTTATGAAACTAAAACATCAGTA 701 ACCAACTTAGACTTTACAGAAAATTGTAGAAAAAATGCCTTTCTTACGAAACCAAAACATCAATA * * * * * 1409302 TCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATATTGAAAAGAATGGGGATTAGTAT 766 TCATGTATCCTAACGAGAAGACCATGTTTATAGTGCCGAATATTGAAAAGAATAGGGATTAGTAT *** * * 1409367 TGTTTGAATTATTTAAGTTACAAACTTTGACTCTATCAGAAATGGTGGAAGGAAAAGCTTCTCTT 831 TGTTTGAATTATTTAAAAGACAAACTTTGACTCTATCAAAAATGGTGGAAAGAAAAGCTTCTCTT * * 1409432 GCGACACCAAAGCATCAATGTCTTGCATCTAAATGAAGGGAA 896 GCGACACCAAAGCATCAATGTCATGCATCTAAATGAAAGGAA * * * * 1409474 TGTGTTTTGGCTTCCAAATCTTGAAAAGAATGGATACTGTTACGAGAATTGATGCTTATCTTATT 1 TGTGTTTTAGCTTCCAAATCTTGAAAAGAATCGATACTGTTACGAGAACTGAAGCTTATCTTATT * * * * * 1409539 TTAGGGATGAACTTTTATTTTAAGGAGAATAGAGG-AAAGAGAGGATGTT-CATGCAAAA-AAAA 66 ATAGGGATGAACTTTGATTTTAAGGAAAATAG-GGCAAAGAAAAGAT-TTCCATGCAAAAGAAAA * * * 1409601 TGATCAATATCATTTATCCTAATAACG-AGAATGTGTTTATAGTGCCT-ATACATAAAATGAGTG 129 TCATCAATATCATTTATCCTAATGA-GAAGAATGTGTTTATAGTGCCTAAT-CATAAAAT-AATG * * * * * 1409664 AAGATCAATAGTAGAATCCATGTTTATCTCATTTAAGGCAC-AATTTTGACTTTACAAAACTTGG 191 AAGATCAATAGTAGAATCCGTGTTTGTCTCATTTAAGGCACGAAATTAGACTTTACAAAAATT-G * 1409728 TGGG-AAAATGCCTTTCTTGCGAAACAAAA-ACTTCAATATCGTGTATCCTAATAAGAAGACCGT 255 TGGGAAAAATGCCTTTCTTGCGAAACAAAACA-TT-AATATCGTGTATCCTAATAAGAAGACCAT * * 1409791 GTTAATGGTGCCTAATCTTGGAAAGAATAGGGATTAGTATGACTATTCTTGTTTGTGTTATTTAA 318 GTTAATGGTGCCTAATCTT-GAAAGAATAGGGATTAGTATGACTATTCTTGTTTG-CTTATTTAT * * * * * 1409856 AAGGCAAACTTTGATTCTATAAAAAACGGGGGAAAGAAATACTTTTCTTGCGACACCAAAGCATC 381 GAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAACTTTTCTTGCGACACCAAAGCATC * * 1409921 AATGTCATGTATCCTAAAGAAGGGAATGTGTTTTGGCTTCCAAATCTT-AACAAGAATGGAGACT 446 AATGTCATGTATCCTAATGAAAGGAATGTGTTTTGGCTTCCAAATCTTGAA-AAGAATGGAGACT * 1409985 GTTACTAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAGAGTAGGGCAAG 510 GTTACAAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAGA-TAGGGCAAG * * * * * 1410050 GAGACGATTTTTATGCAAAAAAAAAAATATCATTATAATTTATCCTAATAAAAAGAATGTGTTTA 574 GAGACGATTTTCATGC-AAAAAAAAAATATCAATATCATTTATCCTAATGAAGAGAATGTGTTTA * ** * 1410115 TAGTGCTTATTCGTAAAATGAGCGAAAATCAATAGTAGAATCCATGTTTATCTCATTTGAGGCAC 638 TAGTGCTTAATCACAAAATAAGCGAAAATCAATAGTAGAATCCATGTTTATCTCATTTGAGGCAC * 1410180 CAACTTCA-ACTTTACA-AAAATTGATAGAAAAAATGCCTTTCTTGCGAAACCAAAACATCAATA 703 CAACTT-AGACTTTACAGAAAATTG-TAGAAAAAATGCCTTTCTTACGAAACCAAAACATCAATA * * * * * 1410243 TCATGCT-TTCTTACGAGAAGACCATGATGCTTCTAGTGCCGATTCTTGAAAAGAATAGGGATTA 766 TCATG-TATCCTAACGAGAAGACCATG-T--TTATAGTGCCGAATATTGAAAAGAATAGGGA-T- * * 1410307 GTAGGACTATTCTTGTTTGTATTATTTAAAAGACAAACTTTGATTCTATCAAAAATGGTGGAAAG 825 -TA-G--TA---TTGTTTGAATTATTTAAAAGACAAACTTTGACTCTATCAAAAATGGTGGAAAG * * * * * * 1410372 AAAAGTTTTTCTTGCGATACTAAAGCATCAATGTCATGTATCTTAATGAAAGGAA 883 AAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGCATCTAAATGAAAGGAA * * * * 1410427 TGTGTTTTTAG-TTCCCAATCTTTAAAAGAATCGA-AGCTGTTGCGAGAACTGAAGCTTGTCTTA 1 TGTG-TTTTAGCTTCCAAATCTTGAAAAGAATCGATA-CTGTTACGAGAACTGAAGCTTATCTTA * * * 1410490 TTGAT-GTGATTAACTTTGGTTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA 64 TT-ATAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA * * 1410554 ATCATCAATATCATTTATCCTAATGAGAAGAATGTGTCTATAGTGCCTAATCACAAAATAATTGA 128 ATCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTATAGTGCCTAATCATAAAATAA-TGA * * * * 1410619 AGATCAAAAGTAGAATCCGTGTTTGTCTCATTTGAGGCACGAACTTAGAGTTTACAAAAATTGCT 192 AGATCAATAGTAGAATCCGTGTTTGTCTCATTTAAGGCACGAAATTAGACTTTACAAAAATTG-T * * * * 1410684 GGGAAAAATGCC-TTCTTGCGAAACTAAAACATTAATATCATGTATCATATTTAGAAGACCATGT 256 GGGAAAAATGCCTTTCTTGCGAAAC-AAAACATTAATATCGTGTATCCTAATAAGAAGACCATGT * * * * * ** 1410748 TTATGGTGCCTATTGTTGAAAAAATGGGGATTAGTATGACTATTCTTGTTTGCATTATTTATGTT 320 TAATGGTGCCTAATCTTGAAAGAATAGGGATTAGTATGACTATTCTTGTTTGC-TTATTTATGAG * * ** * * 1410813 ACAAACTTTGATTCTATCGAAAACGGTGGAAGGAAAGGCTTCTCTTGTGACACCAAAGCATCAAT 384 ACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAAT ** * * * * 1410878 GTCATGTATCCTTTTGAAAGGAATGTGTTTTGGATTCCAAATCTTGAAAAGAATGGATATTTTTA 449 GTCATGTATCCTAATGAAAGGAATGTGTTTTGGCTTCCAAATCTTGAAAAGAATGGAGACTGTTA * * 1410943 CGAGAATTGACGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAGAATAGGGC-AGAGAG 514 CAAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAG-ATAGGGCAAG-GAG * * * * 1411007 AGGATTTTCATGC-AAAAGAAAATCATCAATATCATTTAT-CTAAATGAAGAGAATGCGTTTATC 577 ACGATTTTCATGCAAAAAAAAAAT-ATCAATATCATTTATCCT-AATGAAGAGAATGTGTTTATA 1411070 GTGCTT 640 GTGCTT 1411076 TCTTATGAGA Statistics Matches: 1349, Mismatches: 188, Indels: 109 0.82 0.11 0.07 Matches are distributed among these distances: 927 1 0.00 928 5 0.00 929 247 0.18 930 33 0.02 931 95 0.07 932 99 0.07 933 7 0.01 936 3 0.00 937 2 0.00 938 1 0.00 939 2 0.00 940 11 0.01 941 159 0.12 942 3 0.00 944 25 0.02 945 1 0.00 947 2 0.00 948 1 0.00 950 2 0.00 952 16 0.01 953 224 0.17 954 317 0.23 955 78 0.06 956 14 0.01 957 1 0.00 ACGTcount: A:0.35, C:0.13, G:0.19, T:0.32 Consensus pattern (937 bp): TGTGTTTTAGCTTCCAAATCTTGAAAAGAATCGATACTGTTACGAGAACTGAAGCTTATCTTATT ATAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATC ATCAATATCATTTATCCTAATGAGAAGAATGTGTTTATAGTGCCTAATCATAAAATAATGAAGAT CAATAGTAGAATCCGTGTTTGTCTCATTTAAGGCACGAAATTAGACTTTACAAAAATTGTGGGAA AAATGCCTTTCTTGCGAAACAAAACATTAATATCGTGTATCCTAATAAGAAGACCATGTTAATGG TGCCTAATCTTGAAAGAATAGGGATTAGTATGACTATTCTTGTTTGCTTATTTATGAGACAAACT TTGATTCTATCAAAAACGGTGGAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAATGTCATGT ATCCTAATGAAAGGAATGTGTTTTGGCTTCCAAATCTTGAAAAGAATGGAGACTGTTACAAGAAT TGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAGATAGGGCAAGGAGACGATTTTC ATGCAAAAAAAAAATATCAATATCATTTATCCTAATGAAGAGAATGTGTTTATAGTGCTTAATCA CAAAATAAGCGAAAATCAATAGTAGAATCCATGTTTATCTCATTTGAGGCACCAACTTAGACTTT ACAGAAAATTGTAGAAAAAATGCCTTTCTTACGAAACCAAAACATCAATATCATGTATCCTAACG AGAAGACCATGTTTATAGTGCCGAATATTGAAAAGAATAGGGATTAGTATTGTTTGAATTATTTA AAAGACAAACTTTGACTCTATCAAAAATGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCAT CAATGTCATGCATCTAAATGAAAGGAA Found at i:1413540 original size:473 final size:472 Alignment explanation
Indices: 1412013--1413721 Score: 2078 Period size: 473 Copynumber: 3.6 Consensus size: 472 1412003 ATGCTTATGG *** * * * * 1412013 TGACTATTCTTGTTTGTATTATTTAAGTTAAAAACTTGGATTCTATCAAAAATGGTGGAAGAAAA 1 TGACTATTCTTGTTTGTATTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAA * * ** * * 1412078 GGCTTCTCTTGCGATACCAAAGCATCAATGTCATGCGTCCTAATGAAGGGAATGTGTTTTCGCTT 66 GGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTGGCTT * * * * * * * 1412143 CCGAATCTTGAAAAGGATGGATATTGTTATGAGAATTGTTGCTTATCTTATATT-AGGGATGAAC 131 CCAAATCTTGAAAAGAATGGAGACTGTTACGAGAATTGATGCTTGTCTTAT-TTAAGGGATGAAC * * 1412207 TTTTATTTTAAGGAGAATAGAGCAAA-AAGAGGATTTTTCATGCAAAA-AAAATCATCAATATCA 195 TTTGATTTTAAGGAGAATAGGGCAAAGAA-AGGA-TTTTCATGCAAAAGAAAATCATCAATATCA * * * 1412270 TTTATCCTAACAACG-AGAATGTGTTTATAGTGCCT-ATACATAAAATGAGTGAAGATCAACAGT 258 TTTATCCTAATAA-GAAGAATGTGTTTATAGTGCCTAAT-CATAAAATAAGTGAAGATCAAAAGT * * * * 1412333 AGAATCCATGTTTATCTCATTTAAGGCACAATTTTCACTTTACAAAAATTGGTGGGAAAATGCCT 321 AGAATCCATGTTTATCTCATTTGAGGCACAA-CTTAACTTTACAAAAATTGATGGGAAAATGCCT * * 1412398 TTCTTGCGAAACAAAAAC-TTCAATATCATGTATCCTAATAAGAAGACCATGTTAATGGTGCCTA 385 TTCTTGCGAAACCAAAACATT-AATATCATGTATCCT-ATAAGAAGACCATGTTTATGGTGCCTA * 1412462 ATCTTGAAAAGAATAGGGATTAGTA 448 TTCTTGAAAAGAATAGGGATTAGTA * * * * 1412487 TGACTATTCTTGTTTGTGTTACTTAAAAGGCAAACTTTGATTCTATCGAAAACGGTGG-AGAGAA 1 TGACTATTCTTGTTTGTATTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAG-GAA ** * * * 1412551 ATACTTTTCTTGCGACACTAAAGCATCAATGTCATGTATCCTAAAGAAGGGAATGTGTTTTGGCT 65 AGGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTGGCT * * 1412616 TCCAAATCTT-AACAAGAATGGAGACTGTTACTAGAATTGATGCTTGTCTTATTTAAGGTATGAA 130 TCCAAATCTTGAA-AAGAATGGAGACTGTTACGAGAATTGATGCTTGTCTTATTTAAGGGATGAA * * * * * * * * 1412680 CTTTGATTTTAAGGAGAATAGGGCAAGGAGACGATTTTTATGCAAAAAAAAAT-GTCATTATAAT 194 CTTTGATTTTAAGGAGAATAGGGCAAAGAAAGGATTTTCATGCAAAAGAAAATCATCAATATCAT * * * * * * 1412744 TTATCCTAATAAGAAGAATGTGTTTATAGTGCTTATTCGTAAAA-AGAGCGAAAATCAATAGTAG 259 TTATCCTAATAAGAAGAATGTGTTTATAGTGCCTAATCATAAAATA-AGTGAAGATCAAAAGTAG * 1412808 AATCCATGTTTATCTCATTTGAGGCACCAACTTCAACTTTACAAAAATTGATGGAAAAAATGCCT 323 AATCCATGTTTATCTCATTTGAGGCA-CAACTT-AACTTTACAAAAATTGATGG-GAAAATGCCT * * * ** * * * 1412873 TTCTTGCGAAACCAAAACATCAATATCATGCTTTCTTACGAGAAGACCGTAATGCTTCTGGTGTC 385 TTCTTGCGAAACCAAAACATTAATATCATG-TATCCTATAAGAAGACC---ATGTTTATGGTGCC * * 1412938 GATTCTTGAAAAGACTAGGGATTAGTA 446 TATTCTTGAAAAGAATAGGGATTAGTA * * * 1412965 GGACTATTCTTGTTTGTATTATTTAAAAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAA 1 TGACTATTCTTGTTTGTATTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAA * * * * * * 1413030 AGTTTTTCTTGCGATACTAAAGCATCAATGTCATGTATCTTAATGAAAGGAATGTGTTTTTAG-T 66 GGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTG-TTTTGGCT * * * * * * * 1413094 TCCCAATCTTGAAAAGAATCGAGACTGTTGCGAGAACTGAAGCTTGTCTTATTGAAGGGATTAAC 130 TCCAAATCTTGAAAAGAATGGAGACTGTTACGAGAATTGATGCTTGTCTTATTTAAGGGATGAAC * * * * * 1413159 TTTGGTTTTTAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATT 195 TTTGATTTTAAGGAGAATAGGGCAAAGAAAGGATTTTCATGCAAAAGAAAATCATCAATATCATT * * * * 1413224 TATCCTAATGAGAAGAATGTGTCTATAGTGCCTAATCACAAAATAATTGAAGATCAAAAGTAGAA 260 TATCCTAATAAGAAGAATGTGTTTATAGTGCCTAATCATAAAATAAGTGAAGATCAAAAGTAGAA * * * * * 1413289 TCCGTGTTTGTCTCATTTGAGGCATGAACTTAGAGTTTACAAAAATTGCTGGGAAAATGCC-TTC 325 TCCATGTTTATCTCATTTGAGGCA-CAACTTA-ACTTTACAAAAATTGATGGGAAAATGCCTTTC * * 1413353 TTGCGAAACCAAAACATTAATATCATGTATCCTATTTAGAAGACCATGTTTATGGTGCCTATTGT 388 TTGCGAAACCAAAACATTAATATCATGTATCCTA-TAAGAAGACCATGTTTATGGTGCCTATTCT * 1413418 TGAAAA-AATGGGGATTAGTA 452 TGAAAAGAATAGGGATTAGTA *** 1413438 TGACTATTCTTGTTTGTATTATTTAAGTTACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAA 1 TGACTATTCTTGTTTGTATTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAA ** ** * 1413503 GGCTTTTCTTATGACACCAAAGCATCAATGTCATGTATCCTTTTGAAAGGAATGTGTTTTGGATT 66 GGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTGGCTT * * * 1413568 CCAAATCTTGAAAAGAATGGATATTGTTACGAGAATTGATGCTTGTCTTATTTAAAGGATGAACT 131 CCAAATCTTGAAAAGAATGGAGACTGTTACGAGAATTGATGCTTGTCTTATTTAAGGGATGAACT * 1413633 TTGATTTTAAGGAGAATAGGGCAAAGAGAGGATTTTCATGCAAAAGAAAATCATCAATATCATTT 196 TTGATTTTAAGGAGAATAGGGCAAAGAAAGGATTTTCATGCAAAAGAAAATCATCAATATCATTT ** 1413698 ATCAAAATTAAG-AGAATGTGTTTA 261 ATCCTAA-TAAGAAGAATGTGTTTA 1413722 CCGTGCTTTC Statistics Matches: 1045, Mismatches: 165, Indels: 51 0.83 0.13 0.04 Matches are distributed among these distances: 472 6 0.01 473 354 0.34 474 233 0.22 475 45 0.04 476 10 0.01 477 37 0.04 478 245 0.23 479 114 0.11 480 1 0.00 ACGTcount: A:0.35, C:0.13, G:0.19, T:0.33 Consensus pattern (472 bp): TGACTATTCTTGTTTGTATTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAA GGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTGGCTT CCAAATCTTGAAAAGAATGGAGACTGTTACGAGAATTGATGCTTGTCTTATTTAAGGGATGAACT TTGATTTTAAGGAGAATAGGGCAAAGAAAGGATTTTCATGCAAAAGAAAATCATCAATATCATTT ATCCTAATAAGAAGAATGTGTTTATAGTGCCTAATCATAAAATAAGTGAAGATCAAAAGTAGAAT CCATGTTTATCTCATTTGAGGCACAACTTAACTTTACAAAAATTGATGGGAAAATGCCTTTCTTG CGAAACCAAAACATTAATATCATGTATCCTATAAGAAGACCATGTTTATGGTGCCTATTCTTGAA AAGAATAGGGATTAGTA Found at i:1415806 original size:474 final size:473 Alignment explanation
Indices: 1413765--1416290 Score: 2904 Period size: 474 Copynumber: 5.4 Consensus size: 473 1413755 TGGTGCTGAT * 1413765 TCTTGAAAAGAATAGGGATTAGTAGGACTATTCTTGTTTGTATTATTTAAAAGACAAACTTTGAT 1 TCTTGAAAAGAAT-GGGATTAGTATGACTATTCTTGTTTGTATTATTTAAAAGACAAACTTTGAT * * * * * 1413830 TCTGTCAAAAACGGTGAAAAGAAAAACTTTTCTTGCGACAGCAAAGCATCAATGTCATGCATCCT 65 TCTATCAAAAATGGTGGAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT * * * 1413895 AATGAAGGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATCGAGACTATTACAAGAACTGATG 130 AATGAAGGGAATGTG-TTTTGGTTCCAAATCTTGAAAAGAATCGAGACTATTACGAGAATTGATG * * 1413960 TTTGTCTTATTGAA---A-GAA-TCTTG-----AA--A-AA-AGGGCAAAGAAAAGA-TTTCTAC 194 CTTGTCTTATTTAAGGGATGAACT-TTGATTTTAAGGAGAATAGGGCAAAGAAAAGATTTTC-AC * * * * * 1414010 GCACAACAAAATCATCAATATCATTTATCCTAATGAG-AGAATGTGTTTATAGTGCCTAACCACA 257 GCAAAAAAAAATCATCAATATCATTTATCCTAATAAGAAGAATGTGTTTATAGTGCCTAATCATA * * * * * * * * 1414074 AAATAATTGAAGATTAATTGTAGAATTCATGTTTGTCTCATTTGAGGCACGAGCTTAGAGTTTAT 322 AAATAAGTGAAGATCAATAGTAGAATCCATGTTTATCTCATTTGAGGCACGAACTTAGACTTTAC * 1414139 AGAAATTGGTGGGAAAAATGCCTTTCTTG-GAAAACCAAAACATCAATATCATGTATCCTAATGA 387 AAAAATTGGT-GGAAAAATGCCTTTCTTGCG-AAACCAAAACATCAATATCATGTATCCTAATGA * * * 1414203 GAAGACCATGCTGATGGTGCCTAT 450 GAAGACCATGTTAATGGTGCCTAA * * *** * * 1414227 TGTTGAAAAGAATGGAGATTAGCATGACTATTCTTGTTTGTATTATTTAAGTTAAAAACTTGGAT 1 TCTTGAAAAGAATGG-GATTAGTATGACTATTCTTGTTTGTATTATTTAAAAGACAAACTTTGAT * * ** ** * 1414292 TCTATCAAAAACGGTGGAAGGAAAGGCTTCACTTGCGACACCAAAGCATCAATGTCATGCATCCT 65 TCTATCAAAAATGGTGGAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT * * * 1414357 AATGAAGGGAATGTGTTTTGGCTTCCAAATATTGAAAAGAATGGATACTATTACGAGAATTGATG 130 AATGAAGGGAATGTGTTTTGG-TTCCAAATCTTGAAAAGAATCGAGACTATTACGAGAATTGATG * * * * * 1414422 CTTGTCTTATTTTAGGGATGAACTTTGATTTTAAGGAGAATAGAGCAAAGAGAGGATTTTCAAGC 194 CTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAGAATAGGGCAAAGAAAAGATTTTCACGC * * * 1414487 AAAAAAAAAAATAATCAATATCATTTATCCTTATAACAAGAATGTGTTTATAGTGCCT-ATACAT 259 --AAAAAAAAATCATCAATATCATTTATCCTAATAAGAAGAATGTGTTTATAGTGCCTAAT-CAT * * * * * * 1414551 AAAATGAGTGAAGAAT-AATAGTAGAATCCATGTTTATCTCAGTTAAGGCA-TAATTTTGACTTT 321 AAAATAAGTGAAG-ATCAATAGTAGAATCCATGTTTATCTCATTTGAGGCACGAACTTAGACTTT * * * * ** * 1414614 ACAAAAATTGGTGGGAAAATGCCTTTCATGCGAAACAAAAACTTCAATATCGCGTATCTTAATGA 385 ACAAAAATTGGTGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCATGTATCCTAATGA * 1414679 GAAGACCATGTTAATGGTGCCGAA 450 GAAGACCATGTTAATGGTGCCTAA * 1414703 TCTTGAAAAGAATAGGGATTAGTATGACTATTCTTGTTTGTATTATTTGAAAGACAAACTTTGAT 1 TCTTGAAAAGAAT-GGGATTAGTATGACTATTCTTGTTTGTATTATTTAAAAGACAAACTTTGAT * * * 1414768 TCTATCAAAAATGGTGGAAATAAATACTTTTCTTGCGACACCAAAGCATTAATGTCATGTATCCT 65 TCTATCAAAAATGGTGGAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT * * * * 1414833 AAAGAAGGGAATGTGTTTTGGCTT-C----C-----AA-AATGGAGACTGTTACTAGAATTGATG 130 AATGAAGGGAATGTGTTTTGG-TTCCAAATCTTGAAAAGAATCGAGACTATTACGAGAATTGATG * * * * 1414887 CTTCTCATT-TTTAAGGGATG-ACTTTGATTTTAAGGAGAATAGGGCAATGAGACA-ATTTTTAC 194 CTTGTC-TTATTTAAGGGATGAACTTTGATTTTAAGGAGAATAGGGCAAAGA-AAAGATTTTCAC * * * * 1414949 GCCAAAAAAAAT-ATCAATATAATTTATCCTAATAAGAAGAATGTGTTTATAGTGCATATTCATA 257 GCAAAAAAAAATCATCAATATCATTTATCCTAATAAGAAGAATGTGTTTATAGTGCCTAATCATA * * * * 1415013 AAATAAGCGAAAATCAATAGTAGAATCCATGTTTATCTCATTTGAGGCACCAACTTCGACTTTAC 322 AAATAAGTGAAGATCAATAGTAGAATCCATGTTTATCTCATTTGAGGCACGAACTTAGACTTTAC * * * * 1415078 AAAAATTGGTGGAAAAAATGCCTTTCTTGCGAAACCAAAAGATCAATATCGTGCATTCTAATGAG 387 AAAAATTGGTGG-AAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCATGTATCCTAATGAG ** 1415143 AAGACCATGATGTTTTTGGTG-CTGAA 451 AAGACC---ATGTTAATGGTGCCT-AA * * 1415169 TCTTGAAAAGAATGAGGATTAGTAGGACTATTCTTGTTTGTATTATTTAAAAGATAAACTTTGAT 1 TCTTGAAAAGAATG-GGATTAGTATGACTATTCTTGTTTGTATTATTTAAAAGACAAACTTTGAT ** * * 1415234 TCTAT-AGAAAATGGTGGAAAGAAAAGTTTTTCTTGCGATACCAAAGCATCAATGTCATGTATCT 65 TCTATCA-AAAATGGTGGAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCC * * * * * * 1415298 TAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATCAAGACTATTTCGAGAACTGAA 129 TAATGAAGGGAATGTG-TTTTGGTTCCAAATCTTGAAAAGAATCGAGACTATTACGAGAATTGAT * * * * * * * * * 1415363 GCTTGTCTTATTAAAGGGATTAACTTTGGTTTTAAGCAAAATGGGGCGAAGAAAAGATTTCCATG 193 GCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAGAATAGGGCAAAGAAAAGATTTTCACG * ** * * * 1415428 CAGAGGAAAATCATCAATATCATTTATCCTAATAAGAAGAATATGTCTATAGTGCCTAATCACAA 258 CAAAAAAAAATCATCAATATCATTTATCCTAATAAGAAGAATGTGTTTATAGTGCCTAATCATAA * * * * * 1415493 AATAATTGATGATCAAAAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAGTTTACA 323 AATAAGTGAAGATCAATAGTAGAATCCATGTTTATCTCATTTGAGGCACGAACTTAGACTTTACA * * * * 1415558 GAAATTGGTGGTAAAAATGCC-TTCTTGCAAAACCAAAACATCAATATCATGTATCCTATTTAGA 388 AAAATTGGTGG-AAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCATGTATCCTAATGAGA * * 1415622 AGACCATGTTTATGGTGCCTAT 452 AGACCATGTTAATGGTGCCTAA * *** 1415644 TGTTGAAAA-AATGGGAATTAGTATGACTATTCTTGTTTGTATTATTTAAGTTACAAACTTTGAT 1 TCTTGAAAAGAATGGG-ATTAGTATGACTATTCTTGTTTGTATTATTTAAAAGACAAACTTTGAT * * ** * * 1415708 TCTATCAAAAAAGGTGGAAGGAAAGGCTTCTCTTGCGACACCAAAGCATCAATATCATGTATCCT 65 TCTATCAAAAATGGTGGAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT * * * * * * * * 1415773 ATTGAAGGGAATGTGTTTTGGATTCCAAATCTTGGAAATAATGGATATTGTTACGAGAATTGAGG 130 AATGAAGGGAATGTGTTTTGG-TTCCAAATCTTGAAAAGAATCGAGACTATTACGAGAATTGATG * * * * 1415838 CTTGTCTTATTTAAGGGATGAACTTCGATTTTAAGGAGAATAGGGCAAAGAGAGGATTTTCATGC 194 CTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAGAATAGGGCAAAGAAAAGATTTTCACGC * * * * 1415903 AAAAGAAAATCATCAATATCATTTAT-CTAAATAAGGAGAATGTGTTTATAGTGCCTATTGATAA 259 AAAAAAAAATCATCAATATCATTTATCCT-AATAAGAAGAATGTGTTTATAGTGCCTAATCATAA * * * * * * 1415967 AATGAGAGAAGATCTACAGTAGAATCCATGTTTATCTTATTTGAGGCAC-AACTTCGACTTTACA 323 AATAAGTGAAGATCAATAGTAGAATCCATGTTTATCTCATTTGAGGCACGAACTTAGACTTTACA * * 1416031 AAAATTGGTGAGAAAAATGCTTTTCTTGCGAAACCAGAACATCAATATCATGTATCCTAATGAGA 388 AAAATTGGTG-GAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCATGTATCCTAATGAGA 1416096 AGACCATGTTAATGGTGCCTAA 452 AGACCATGTTAATGGTGCCTAA * * * * 1416118 TCTTGAAAAAAAAAGGGGATTAGTATGACTATTCCTGTTTGTTTTATTTAAAACG-CAAACTTTG 1 TCTTG--AAAAGAATGGGATTAGTATGACTATTCTTGTTTGTATTATTTAAAA-GACAAACTTTG * * 1416182 ATTCTATCAAAAATGGTGGAAAGAAATACTTTTCTTGCGACACCAAAGCATCAATGTTATGTATC 63 ATTCTATCAAAAATGGTGGAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC * * 1416247 CTAATGAAGTGAATGTGTTTTGGTTTCCAAATCTTGAAATGAAT 128 CTAATGAAGGGAATGTGTTTTGG-TTCCAAATCTTGAAAAGAAT 1416291 AGGGATTAAT Statistics Matches: 1736, Mismatches: 265, Indels: 112 0.82 0.13 0.05 Matches are distributed among these distances: 460 2 0.00 461 94 0.05 462 208 0.12 463 49 0.03 464 36 0.02 465 42 0.02 466 153 0.09 467 8 0.00 471 3 0.00 473 41 0.02 474 361 0.21 475 37 0.02 476 347 0.20 477 91 0.05 478 140 0.08 479 124 0.07 ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32 Consensus pattern (473 bp): TCTTGAAAAGAATGGGATTAGTATGACTATTCTTGTTTGTATTATTTAAAAGACAAACTTTGATT CTATCAAAAATGGTGGAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTA ATGAAGGGAATGTGTTTTGGTTCCAAATCTTGAAAAGAATCGAGACTATTACGAGAATTGATGCT TGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAGAATAGGGCAAAGAAAAGATTTTCACGCAA AAAAAAATCATCAATATCATTTATCCTAATAAGAAGAATGTGTTTATAGTGCCTAATCATAAAAT AAGTGAAGATCAATAGTAGAATCCATGTTTATCTCATTTGAGGCACGAACTTAGACTTTACAAAA ATTGGTGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCATGTATCCTAATGAGAAGAC CATGTTAATGGTGCCTAA Found at i:1416221 original size:160 final size:158 Alignment explanation
Indices: 1416029--1416421 Score: 421 Period size: 157 Copynumber: 2.5 Consensus size: 158 1416019 TTCGACTTTA * * * 1416029 CAAAAATTGGT-GAGAA-AAATGCTTTTCTTGCGAAACCAGAA-CATCAATATCATGTATCCTAA 1 CAAAAA-TGGTGGA-AAGAAATACTTTTCTTGCGACACCAGAAGCATCAATGTCATGTATCCTAA * * * 1416091 TG-AGAAGACCATGT-TAATGG-TGCCTAATCTTGAAAAAAAAAGGGGATTAGTATGACTATTCC 64 TGAAG-AGA--ATGTGTAATGGTTGCCAAATCTTGAAAAAAAAA-GGGATTAATATGACTATTCA * 1416153 TGTTTGTTTTATTTAAAACGCAA-ACTTTGATTCTAT 125 TGTTTGTCTTATTTAAAA---AATACTTTGATTCTAT * 1416189 CAAAAATGGTGGAAAGAAATACTTTTCTTGCGACACCA-AAGCATCAATGTTATGTATCCTAATG 1 CAAAAATGGTGGAAAGAAATACTTTTCTTGCGACACCAGAAGCATCAATGTCATGTATCCTAATG * ** * ** * * * 1416253 AAGTGAATGTGTTTTGGTTTCCAAATCTTGAAATGAATAGGGATTAATGTGAGTATTCATGTTTG 66 AAGAGAATGTGTAATGGTTGCCAAATCTTGAAAAAAAAAGGGATTAATATGACTATTCATGTTTG * 1416318 TCTTATTTAAAAAATCCTTTGATTCTAT 131 TCTTATTTAAAAAATACTTTGATTCTAT * * * 1416346 CAAAAATGGTGGAAAGAAA-AGCTTCTCTTGCGACAGC-GAAGCATCAATGTCATGTATCCAAAT 1 CAAAAATGGTGGAAAGAAATA-CTTTTCTTGCGACACCAGAAGCATCAATGTCATGTATCCTAAT 1416409 GAA-AGGAATGTGT 65 GAAGA-GAATGTGT 1416422 TTTGCCTTCC Statistics Matches: 200, Mismatches: 23, Indels: 23 0.81 0.09 0.09 Matches are distributed among these distances: 156 3 0.01 157 79 0.40 158 4 0.02 159 45 0.22 160 67 0.34 161 2 0.01 ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32 Consensus pattern (158 bp): CAAAAATGGTGGAAAGAAATACTTTTCTTGCGACACCAGAAGCATCAATGTCATGTATCCTAATG AAGAGAATGTGTAATGGTTGCCAAATCTTGAAAAAAAAAGGGATTAATATGACTATTCATGTTTG TCTTATTTAAAAAATACTTTGATTCTAT Found at i:1416388 original size:157 final size:157 Alignment explanation
Indices: 1416116--1416447 Score: 436 Period size: 157 Copynumber: 2.1 Consensus size: 157 1416106 AATGGTGCCT * * * * * 1416116 AATCTTGAAAAAAAAAGGGGATTAGTATGACTATTCCTGTTTGTTTTATTTAAAACGCAAACTTT 1 AATCTTGAAAAGAATA-GGGATTAATATGACTATTCATGTTTGTCTTATTTAAAA--CAAACTTT * * 1416181 GATTCTATCAAAAATGGTGGAAAGAAATACTTTTCTTGCGACACCAAAGCATCAATGTTATGTAT 63 GATTCTATCAAAAATGGTGGAAAGAAATACTTCTCTTGCGACACCAAAGCATCAATGTCATGTAT * ** 1416246 CCTAATG-AAGTGAATGTGTTTTGGTTTCCA 128 CCAAATGAAAG-GAATGTGTTTTGCCTTCCA * * * * 1416276 AATCTTGAAATGAATAGGGATTAATGTGAGTATTCATGTTTGTCTTATTTAAAA-AATCCTTTGA 1 AATCTTGAAAAGAATAGGGATTAATATGACTATTCATGTTTGTCTTATTTAAAACAA-ACTTTGA * * 1416340 TTCTATCAAAAATGGTGGAAAGAAA-AGCTTCTCTTGCGACAGCGAAGCATCAATGTCATGTATC 65 TTCTATCAAAAATGGTGGAAAGAAATA-CTTCTCTTGCGACACCAAAGCATCAATGTCATGTATC * 1416404 CAAATGAAAGGAATGTGTTTTGCCTTCCC 129 CAAATGAAAGGAATGTGTTTTGCCTTCCA 1416433 AATCTTGAAAAGAAT 1 AATCTTGAAAAGAAT 1416448 GGAGTCTATT Statistics Matches: 151, Mismatches: 18, Indels: 9 0.85 0.10 0.05 Matches are distributed among these distances: 156 3 0.02 157 99 0.66 158 3 0.02 159 33 0.22 160 13 0.09 ACGTcount: A:0.35, C:0.14, G:0.18, T:0.34 Consensus pattern (157 bp): AATCTTGAAAAGAATAGGGATTAATATGACTATTCATGTTTGTCTTATTTAAAACAAACTTTGAT TCTATCAAAAATGGTGGAAAGAAATACTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCA AATGAAAGGAATGTGTTTTGCCTTCCA Found at i:1416482 original size:157 final size:157 Alignment explanation
Indices: 1416177--1416483 Score: 390 Period size: 157 Copynumber: 2.0 Consensus size: 157 1416167 AAAACGCAAA * * 1416177 CTTTGATTCTATCAAAAATGGTGGAAAGAAATACTTTTCTTGCGACACCAAAGCATCAATGTTAT 1 CTTTGATTCTATCAAAAATGGTGGAAAGAAATACTTCTCTTGCGACACCAAAGCATCAATGTCAT * ** * * * 1416242 GTATCCTAATGAAGTGAATGTGTTTTGGTTTCCAAATCTTGAAATGAATAGGGATTAATGTGAGT 66 GTATCCAAATGAAGTGAATGTGTTTTGCCTTCCAAATCTTGAAAAGAATAGGGATTAATATAAGT * * * * 1416307 ATTCATGTTTGTCTTATTTAAAAAATC 131 AATCATGCTTGCCATATTTAAAAAATC * * 1416334 CTTTGATTCTATCAAAAATGGTGGAAAGAAA-AGCTTCTCTTGCGACAGCGAAGCATCAATGTCA 1 CTTTGATTCTATCAAAAATGGTGGAAAGAAATA-CTTCTCTTGCGACACCAAAGCATCAATGTCA * * 1416398 TGTATCCAAATGAAAG-GAATGTGTTTTGCCTTCCCAATCTTGAAAAGAAT--GGAGTCTATTAT 65 TGTATCCAAATG-AAGTGAATGTGTTTTGCCTTCCAAATCTTGAAAAGAATAGGGA-T-TAATAT 1416460 AAG-AATCAATGCTTGCCATATTTA 127 AAGTAATC-ATGCTTGCCATATTTA 1416484 GGAGATGAAC Statistics Matches: 129, Mismatches: 16, Indels: 10 0.83 0.10 0.06 Matches are distributed among these distances: 155 3 0.02 156 5 0.04 157 118 0.91 158 3 0.02 ACGTcount: A:0.34, C:0.14, G:0.18, T:0.34 Consensus pattern (157 bp): CTTTGATTCTATCAAAAATGGTGGAAAGAAATACTTCTCTTGCGACACCAAAGCATCAATGTCAT GTATCCAAATGAAGTGAATGTGTTTTGCCTTCCAAATCTTGAAAAGAATAGGGATTAATATAAGT AATCATGCTTGCCATATTTAAAAAATC Found at i:1416546 original size:633 final size:633 Alignment explanation
Indices: 1415649--1417147 Score: 1849 Period size: 633 Copynumber: 2.4 Consensus size: 633 1415639 CCTATTGTTG * * * * ** * 1415649 AAAAAAT-GGGAATTAGTATGACTATTCTTGTTTGTATTATTTAAGTTACAAACTTTGATTCTAT 1 AAAAAATAGGGAA-TAATATGAGTATTCATGTTTGTCTTATTT-AGAAACAACCTTTGATTCTAT * * * * 1415713 CAAAAAAGGTGGAAGGAAAGGCTTCTCTTGCGACACCAAAGCATCAATATCATGTATCCTATTGA 64 C-AAAAAGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGA * * * * * * * * * 1415778 AGGGAATGTGTTTTGGATTCCAAATCTTGGAAATAATGGATATTGTTACGAGAATTGAGGCTTGT 128 AAGGAATGTGTTTTGGCTTCCAAATCTTGAAAAGAATGGAT-CTATTATGAGAA-TCAAGCTTGT * * * * * 1415843 CTTATTTAAGG-GATGAACTTCGATTTTAAGGAGAATAGGGCAAAGAGAGGATTTTCATGCAAAA 191 CTTATTTAAGGAGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA * * * 1415907 GAAAATCATCAATATCATTTAT-CTAAATAAGGAGAATGTGTTTATAGTGCCTATTGATAAAATG 256 GAAAATCATCAATATCATTTATCCT-AATAAGGAGAATGTGTTTATAGTGCCTAGTCATAAAATA * * * 1415971 AGAGAAGATCTACAGTAGAATCCATGTTTATCTTATTTGAGGCAC-AACTTCGA-CTTTACAAAA 320 AGAGAAGATCAACAATAGAATCCATGTTTATCTTATTTGAGGCACGAACTTAGAGCTTTACAAAA ** * * 1416034 ATTGGTGAGAAAAATGCTTTTCTTGCGAAACCAGAACATCAATATCATGTATCCTAATGAGAAGA 385 ATTGGTGAGAAAAATGCCATTCTTGCAAAACCAAAACATCAATATCATGTATCCTAATGAGAAGA * * 1416099 CCATGTTAATGGTGCCTAATCTTGAAAAAAAAAGGGGATTAGTATGACTATTCCTGTTTGTTTTA 450 CCATATTAATGGTGCCTAATCTTG-AAAAAAAAGGGGATTAGTATGACTATTCCTGTTTGTATTA ** * 1416164 TTTAAAACG-CAAACTTTGATTCT-ATCAAAAATGGTGGAAAGAAATACTTTTCTTGCGACACCA 514 GGTAAAA-GACAAACTTTGATTCTAAT-AAAAACGGTGGAAAGAAATACTTTTCTTGCGACACCA * * * * * * 1416227 AAGCATCAATGTTATGTATCCTAATGAAGTGAATGTGTTTTGGTTTCCAAATCTTGA 577 AAGCATCAAAGTCATGTACCCTAATAAAGTGAATATGTTTTGGCTTCCAAATCTTGA ** * * 1416284 AATGAATAGGGATTAATGTGAGTATTCATGTTTGTCTTATTTA-AAA-AATCCTTTGATTCTATC 1 AAAAAATAGGGAATAATATGAGTATTCATGTTTGTCTTATTTAGAAACAA-CCTTTGATTCTATC * * * 1416347 AAAAATGGTGGAAAGAAAAGCTTCTCTTGCGACAGCGAAGCATCAATGTCATGTATCCAAATGAA 65 AAAAA-GGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAA * * * * 1416412 AGGAATGTGTTTTGCCTTCCCAATCTTGAAAAGAATGGAGTCTATTATAAGAATCAATGCTTGCC 129 AGGAATGTGTTTTGGCTTCCAAATCTTGAAAAGAATGGA-TCTATTATGAGAATCAA-GCTTGTC * * * 1416477 ATATTT-AGGAGATGAACTTTGATTTTAAGGAAAATAGGGCCACGAAAAGATTTCCATGCAAAAG 192 TTATTTAAGGAGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG * 1416541 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAGTCATAAAATAAG 257 AAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAGTCATAAAATAAG * * * * * * 1416606 TGAAGATCAATAATAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGAGTTTTATAGAAAT 322 AGAAGATCAACAATAGAATCCATGTTTATCTTATTTGAGGCACGAACTTAGAGCTTTACAAAAAT * * * * * 1416671 TGGTGGGAAAAATGCCATTCTTGCAAAATCAAAACATCAATATCGTGTATCCTAATGTGGAGACC 387 TGGTGAGAAAAATGCCATTCTTGCAAAACCAAAACATCAATATCATGTATCCTAATGAGAAGACC * * * * * * 1416736 ATATTTATGGTGTCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCTTTTTTGTATTAGGT 452 ATATTAATGGTGCCTAATCTTGAAAAAAAAGGGGATTAGTATGACTATTCCTGTTTGTATTAGGT * * * * 1416801 AGAAGACAAACTTTGATTCTAATGAAAACGGTGGAAAGAAATGCTTTTCTTGTGACACCAAAGCA 517 AAAAGACAAACTTTGATTCTAATAAAAACGGTGGAAAGAAATACTTTTCTTGCGACACCAAAGCA 1416866 TCAAAGTCATGTACCCTAATAAAGTGAATATGTTTTGGCTTCCAAATCTTGA 582 TCAAAGTCATGTACCCTAATAAAGTGAATATGTTTTGGCTTCCAAATCTTGA * * * 1416918 AAAAAATGGGGAATAGTATGGGTATTCATGTTTGTCTTATTTATGAAACAACCTTTGATTCTATC 1 AAAAAATAGGGAATAATATGAGTATTCATGTTTGTCTTATTTA-GAAACAACCTTTGATTCTATC * * 1416983 AAAAAAGTGGAATA-AAAAGCCTT-TCTTGC-AGCACCAAAGCATCAATGTCTTGTATCCTAAT- 65 AAAAAGGTGGAA-AGAAAAG-CTTCTCTTGCGA-CACCAAAGCATCAATGTCATGTATCCTAATG ** * * * ** 1417044 AAAGGGAATGTGTTTTGGCTTCTTATTCTTTAAAAGAATGGAAACTATTATGAGGTTCGAAGCTT 127 AAA-GGAATGTGTTTTGGCTTCCAAATCTTGAAAAGAATGG-ATCTATTATGAGAATC-AAGCTT * * 1417109 GTCTTATTTAAGGA-ATGAACTTTGATTTTATGAAAAATA 189 GTCTTATTTAAGGAGATGAACTTTGATTTTAAGGAAAATA 1417148 AGGCTATAAG Statistics Matches: 736, Mismatches: 107, Indels: 42 0.83 0.12 0.05 Matches are distributed among these distances: 632 12 0.02 633 262 0.36 634 188 0.26 635 235 0.32 636 37 0.05 637 2 0.00 ACGTcount: A:0.35, C:0.13, G:0.19, T:0.33 Consensus pattern (633 bp): AAAAAATAGGGAATAATATGAGTATTCATGTTTGTCTTATTTAGAAACAACCTTTGATTCTATCA AAAAGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAG GAATGTGTTTTGGCTTCCAAATCTTGAAAAGAATGGATCTATTATGAGAATCAAGCTTGTCTTAT TTAAGGAGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA TCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAGTCATAAAATAAGAGAA GATCAACAATAGAATCCATGTTTATCTTATTTGAGGCACGAACTTAGAGCTTTACAAAAATTGGT GAGAAAAATGCCATTCTTGCAAAACCAAAACATCAATATCATGTATCCTAATGAGAAGACCATAT TAATGGTGCCTAATCTTGAAAAAAAAGGGGATTAGTATGACTATTCCTGTTTGTATTAGGTAAAA GACAAACTTTGATTCTAATAAAAACGGTGGAAAGAAATACTTTTCTTGCGACACCAAAGCATCAA AGTCATGTACCCTAATAAAGTGAATATGTTTTGGCTTCCAAATCTTGA Found at i:1417084 original size:158 final size:159 Alignment explanation
Indices: 1416751--1417084 Score: 388 Period size: 158 Copynumber: 2.1 Consensus size: 159 1416741 TATGGTGTCT * * * 1416751 AATCTTGAAAAGAATGGGGATTAGTATGACTATTCTTTTTTGTATTAGGTAGAAGACAAACTTTG 1 AATCTTGAAAAGAATGGGGAATAGTATGACTATTCATGTTTGTATTAGGTAGAAGACAAACTTTG * ** * * * 1416816 ATTCTAATGAAAACGGTGGAAAGAAATGCTTTTCTTGTGACACCAAAGCATCAAAGTCATGTACC 66 ATTCTAATCAAAAAAGTGGAAAGAAAAGCCTTTCTTGAGACACCAAAGCATCAAAGTCATGTACC * 1416881 CTAATAAAGTGAATATGTTTTGGCTTCCA 131 CTAATAAAGGGAATATGTTTTGGCTTCCA * ** * ** * 1416910 AATCTTGAAAAAAATGGGGAATAGTATGGGTATTCATGTTTGTCTTATTTATGAA-ACAACCTTT 1 AATCTTGAAAAGAATGGGGAATAGTATGACTATTCATGTTTGTATTAGGTA-GAAGACAAACTTT * * 1416974 GATTCT-ATCAAAAAAGTGGAATA-AAAAGCCTTTCTTGCAG-CACCAAAGCATCAATGTCTTGT 65 GATTCTAATCAAAAAAGTGGAA-AGAAAAGCCTTTCTTG-AGACACCAAAGCATCAAAGTCATGT * * ** 1417036 ATCCTAATAAAGGGAATGTGTTTTGGCTTCTT 128 ACCCTAATAAAGGGAATATGTTTTGGCTTCCA * * 1417068 ATTCTTTAAAAGAATGG 1 AATCTTGAAAAGAATGG 1417085 AAACTATTAT Statistics Matches: 146, Mismatches: 26, Indels: 7 0.82 0.15 0.04 Matches are distributed among these distances: 158 85 0.58 159 58 0.40 160 3 0.02 ACGTcount: A:0.34, C:0.13, G:0.19, T:0.34 Consensus pattern (159 bp): AATCTTGAAAAGAATGGGGAATAGTATGACTATTCATGTTTGTATTAGGTAGAAGACAAACTTTG ATTCTAATCAAAAAAGTGGAAAGAAAAGCCTTTCTTGAGACACCAAAGCATCAAAGTCATGTACC CTAATAAAGGGAATATGTTTTGGCTTCCA Found at i:1417132 original size:158 final size:157 Alignment explanation
Indices: 1416856--1417145 Score: 343 Period size: 158 Copynumber: 1.8 Consensus size: 157 1416846 TTTCTTGTGA * 1416856 CACCAAAGCATCAAAGTCATGTACCCTAATAAAGTGAATATGTTTTGGCTTCCAAATCTTGAAAA 1 CACCAAAGCATCAAAGTCATGTACCCTAATAAAGGGAATATGTTTTGGCTTCCAAATCTTGAAAA * * * * 1416921 AAATGGGGAATAGTATGGGTATTCATGTTTGTCTTATTTATGAAACAACCTTTGATTCTATCAAA 66 AAATGGGAAATAGTATGGG-ATTCAAGCTTGTCTTATTTAGGAAACAACCTTTGATTCTATCAAA 1416986 AAAGTGGAATAAAAAGCCTTTCTTGCAG 130 AAAGTGGAATAAAAAGCCTTTCTTGCAG * * * * ** * * 1417014 CACCAAAGCATCAATGTCTTGTATCCTAATAAAGGGAATGTGTTTTGGCTTCTTATTCTTTAAAA 1 CACCAAAGCATCAAAGTCATGTACCCTAATAAAGGGAATATGTTTTGGCTTCCAAATCTTGAAAA * * ** * * 1417079 GAAT-GGAAACTATTATGAGG-TTCGAAGCTTGTCTTATTTAAGGAATGAA-CTTTGATTTTATG 66 AAATGGGAAA-TAGTATG-GGATTC-AAGCTTGTCTTATTT-AGGAAACAACCTTTGATTCTATC 1417141 AAAAA 127 AAAAA 1417146 TAAGGCTATA Statistics Matches: 109, Mismatches: 19, Indels: 8 0.80 0.14 0.06 Matches are distributed among these distances: 157 7 0.06 158 94 0.86 159 8 0.07 ACGTcount: A:0.35, C:0.14, G:0.18, T:0.34 Consensus pattern (157 bp): CACCAAAGCATCAAAGTCATGTACCCTAATAAAGGGAATATGTTTTGGCTTCCAAATCTTGAAAA AAATGGGAAATAGTATGGGATTCAAGCTTGTCTTATTTAGGAAACAACCTTTGATTCTATCAAAA AAGTGGAATAAAAAGCCTTTCTTGCAG Found at i:1427147 original size:20 final size:20 Alignment explanation
Indices: 1427122--1427159 Score: 67 Period size: 20 Copynumber: 1.9 Consensus size: 20 1427112 TTCAATGTTC 1427122 AATGTATCGATAAATGAACA 1 AATGTATCGATAAATGAACA * 1427142 AATGTATCGATACATGAA 1 AATGTATCGATAAATGAA 1427160 ACTGGCAGTA Statistics Matches: 17, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 20 17 1.00 ACGTcount: A:0.47, C:0.11, G:0.16, T:0.26 Consensus pattern (20 bp): AATGTATCGATAAATGAACA Found at i:1428826 original size:476 final size:473 Alignment explanation
Indices: 1427923--1429189 Score: 1632 Period size: 476 Copynumber: 2.7 Consensus size: 473 1427913 TGAGCTTTTA * * * * * 1427923 AGGAGAATGTGTTTGTAGTGGCTAACCACAAAATGGATGGAGATCATTACTAGAATCCACATTTG 1 AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACATTTG * * * 1427988 TCTCATTTGAGGCATGAACTTAGACTTT-CAAAAAATTAGTGGGGTAAAAAGCCTTTCTTGCAAA 66 TCTCATTTGAGGCATGAACTTAGACTTTAC-AAAAATTGGT-GGG-AAAAAGCCTTTCTGGGAAA * * ** * * 1428052 ACAATAGCATTTATATGATGTATCCTAATGAGAAGACTATGCGTACGATGCCTAATCCAGAAAAG 128 CCAA-AGCATTAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAG ** ** 1428117 AACCGGGATTAGAATGAGTATTCATGGCTGTCATATTCAGGAGACAAACTTTGATTCTATCAAAA 192 AA-TAGGATTAGAATGAGTATTCATGTTTGTCATATTCAGGAGACAAACTTTGATTCTATCAAAA * * * * * * 1428182 ATGGTGGAAACAAATGCTTTTCTTGCGACACCAAAGTATAAATGTCATGCATCCTAACGAAGGGA 256 ATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATAAATGTCATGTATCCTAATGAAGAGA * * * 1428247 ATGTGTTTTGGTTTCCCAAACTTGAAAAGAATAGAGACTGTTACGAGAATCGTTGCTTATCTTAT 321 ATGTGTTTTGGCTTCCCAAACTTGAAAAGAATAGAGACTGTTACAAGAATCGATGCTTATCTTAT * * * * * 1428312 TTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGTTTTCCATGTAAAAGAAAAT 386 TTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTCCAAGCAAAAGAAAAT * 1428377 C-TTCAATATCATTTATCCTATTG 451 CATT-AATATCATTTATCCTAATG * * * * 1428400 AGGGGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACGAGCATCCACGTTTG 1 AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACATTTG * * * 1428465 TCTCTTTTGAGGGATGAACTTAGACTTTACAAAAATTGGTGGGAAGAATGCCTTTCGTGGGAAAC 66 TCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAA-AAAGCCTTTC-TGGGAAAC * * ** ** 1428530 CAAGGCATTAATATCG-TTTATCCTAACAAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGA 129 CAAAGCATTAATAT-GATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGA * * * * * * * * 1428594 ATATGGATTAGTATCACTATTCTTGTTTGTCTTATTTAAGG-TACAAACTTTGATTCTATTAAAA 193 ATA-GGATTAGAATGAGTATTCATGTTTGTCATA-TTCAGGAGACAAACTTTGATTCTATCAAAA * * 1428658 ATGGTGGAAAGAAAAGCTTTTCTTGC-AGC-CGCAAAGCATGAGTGTCATGTATCCTAATGAAGA 256 ATGGTGGAAAGAAAAGCTTTTCTTGCGA-CAC-CAAAGCATAAATGTCATGTATCCTAATGAAGA ** * * * 1428721 GAATGTGTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGTTTT 319 GAATGTGTTTTGGCTTCCCAAACTTGAAAAGAATAGAGACTGTTACAAGAATCGATGCTTATCTT * * 1428786 ATTTAAGGGATGAACTTTGATTTTAAGAAAAATGGGGCAAAGAAAAGATTTCCAAGCAAAAGGAA 384 ATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTCCAAGCAAAAGAAA 1428851 ATCATTAATATCATTTATCCTAATG 449 ATCATTAATATCATTTATCCTAATG * * 1428876 AGGAGAATGTGTTTATAGTGCCTAATCAC-AAATAAATGAAGATCATTACTAGAATCCACATTTA 1 AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACATTTG * * * * 1428940 TCTCATTCGAGGCATGAGCTTTGACTTTTA-AAAAATTGGTGGGAAAAAGCCTTTCTTGTGAAAC 66 TCTCATTTGAGGCATGAACTTAGAC-TTTACAAAAATTGGTGGGAAAAAGCCTTTC-TGGGAAAC * * 1429004 TAAAGCATAAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAA 129 CAAAGCATTAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAA * * * 1429069 TAGAGATTAGAATGAGTATTCATGTTTGTCGTACTCAGGAGACAAACTTTGATTCTATCAAAAAC 194 TAG-GATTAGAATGAGTATTCATGTTTGTCATATTCAGGAGACAAACTTTGATTCTATCAAAAAT * * * * 1429134 GATGAAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAAT 258 GGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATAAATGTCATGTATCCTAAT 1429190 AAAGGGATAA Statistics Matches: 675, Mismatches: 100, Indels: 33 0.84 0.12 0.04 Matches are distributed among these distances: 473 6 0.01 474 166 0.25 475 71 0.11 476 324 0.48 477 107 0.16 478 1 0.00 ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31 Consensus pattern (473 bp): AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACATTTG TCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGCCTTTCTGGGAAACCA AAGCATTAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATA GGATTAGAATGAGTATTCATGTTTGTCATATTCAGGAGACAAACTTTGATTCTATCAAAAATGGT GGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATAAATGTCATGTATCCTAATGAAGAGAATGTG TTTTGGCTTCCCAAACTTGAAAAGAATAGAGACTGTTACAAGAATCGATGCTTATCTTATTTAAG GGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTCCAAGCAAAAGAAAATCATTA ATATCATTTATCCTAATG Found at i:1429331 original size:186 final size:186 Alignment explanation
Indices: 1429010--1429374 Score: 597 Period size: 186 Copynumber: 2.0 Consensus size: 186 1429000 AAACTAAAGC * 1429010 ATAAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATAGAGA 1 ATAAATATGATGTATCCTAATGAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATAGAGA * * * 1429075 TTAGAATGAGTATTCATGTTTGTCGTACTCAGGAGACAAACTTTGATTCTATCAAAAACGATGAA 66 TTAGAATGAGTATACATGTTTGTCATACTCAGGAGACAAACTTTGATACTATCAAAAACGATGAA ** 1429140 AAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATAAAGGG 131 AAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATAAAGGG * * 1429196 ATAAATATGATGTATCCTAATGAGAAGACTATGTTTACGGTGCCTAATCTAGAAAAGAACT-GGG 1 ATAAATATGATGTATCCTAATGAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAA-TAGAG * * 1429260 ATTAGAATGAGTATACATGTTTGTCATACTCAGGAGACAAACTTTGATACTATCAAAAACGGTGG 65 ATTAGAATGAGTATACATGTTTGTCATACTCAGGAGACAAACTTTGATACTATCAAAAACGATGA * * * 1429325 AAAGAAAAGCTTTTTTTGCAACACTAAAGCATTAATGTCATGTATCCTAA 130 AAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAA 1429375 CGAAAGGAAT Statistics Matches: 165, Mismatches: 13, Indels: 2 0.92 0.07 0.01 Matches are distributed among these distances: 186 164 0.99 187 1 0.01 ACGTcount: A:0.38, C:0.14, G:0.19, T:0.29 Consensus pattern (186 bp): ATAAATATGATGTATCCTAATGAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATAGAGA TTAGAATGAGTATACATGTTTGTCATACTCAGGAGACAAACTTTGATACTATCAAAAACGATGAA AAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATAAAGGG Found at i:1432444 original size:474 final size:470 Alignment explanation
Indices: 1431538--1433116 Score: 2097 Period size: 474 Copynumber: 3.3 Consensus size: 470 1431528 TAAAAAAATA 1431538 GGGATTAGTAAGACTATTCATGTTTGTCTTATTTAAGAAATAAACTTTTATTCTATCAAAAATGG 1 GGGATTAGTAAGACTATTCATGTTTGTCTTATTTAAGAAATAAAC-TTTATTCTATCAAAAATGG ** 1431603 TGGAAAA-AAAAGCTTTTCTTAG-GACGCCAAAGCATTAATGTCATGTCTCCTAATGAAAAGAAT 65 T-GAAAAGAAAAGCTTTTCTT-GCGACGCCAAAGCATTAATGTCATGTCTCCTAATGAAGGGAAT * * 1431666 GTGTTTTGGCTTCTCTAGCTTGAAAAGATAAAGACTATTACTAGAATCGATGCTTATTTTATTTA 128 GTGTTTTGGCTTC-CTAGCTTGAAAAGATAAA-ACTGTTACGAGAATCGATGCTTATTTTATTTA ** * * * 1431731 AGAAAAGACCTTTGATTTTAAGGAAAATAGGCCAAAGAAAAGATTTCAATGCAAAAAAAATCATC 191 AGGGATGACCTTTGCTTTTAAGGAAAATAGGGCAAAGAAAAGATTTC-ATGCAAAAAAAATCATC * * * * * 1431796 AATGTCACTTATCCTAATGAGGAAAATGTGTTTACAGTGCTTAATCGCAAAATAAATGAAGATCA 255 AATATAACTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCGCAAAATAAATGAAGATCA * * * * * 1431861 TTAGTAGCATCCATGTTTGTCTCATTTGAGGCAAGAACATAGACTTTACGAAAATTGGTGGGTAA 320 CTAGTAGAATCCATGTTTGTCTCATTTGAGGTAAGAACTTAGACTTTACAAAAATTGGTGGGTAA 1431926 AAGGCCTTTCTTGCGAAACCAAAGCAGT-AATATGATGTATCCTAATGAGAAGACTATGTTTATG 385 AAGGCCTTTCTTGCGAAACCAAAGCA-TCAATATGATGTATCCTAATGAGAAGACTATGTTTATG * 1431990 GTGCCTAATCCTGAAAAGAACA 449 GTGCCTAATCCTGAAAAGAACG * * * * * 1432012 AGGATTAGTATGAGC-ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACG 1 GGGATTAGTAAGA-CTATTCATGTTTGTCTTATTTAAGAAATAAACTTT-ATTCTATCAAAAATG * * 1432076 GTGAAAAGAAAAGCTTTTCTTGCGATGTCAAAGCATTAATGTCATG-CATCCTAATGAAGGGAAT 64 GTGAAAAGAAAAGCTTTTCTTGCGACGCCAAAGCATTAATGTCATGTC-TCCTAATGAAGGGAAT * * * * 1432140 GTGTTTTGGCTTCCTAATCTTGAAAAGAATGAAAACTGTTACGAGAATCTATGCTTATCTTATTC 128 GTGTTTTGGCTTCCT-AGCTTGAAAAG-AT-AAAACTGTTACGAGAATCGATGCTTATTTTATTT * 1432205 AAGGGATGAACTTTGCTTTTAAGGAAAATAGGGCAAAGAAAAGATTTCGATGC-AAAAAAATCAT 190 AAGGGATGACCTTTGCTTTTAAGGAAAATAGGGCAAAGAAAAGATTTC-ATGCAAAAAAAATCAT * * * * 1432269 CAATATAATTTATCCTGATGAAGAGAATGTGTTTATAGTGCCTAATCACAAAATAAATGAAGATC 254 CAATATAACTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCGCAAAATAAATGAAGATC * * * * * 1432334 ACTACTGGAATCCACGTTTGTCTCATTTGAGGTAAAAACTTAGACTTTACAAAAATTGGT-GGAA 319 ACTAGTAGAATCCATGTTTGTCTCATTTGAGGTAAGAACTTAGACTTTACAAAAATTGGTGGGTA * * 1432398 AGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCG-TGAATCCTAATGAGAAGACTATGTTTA 384 A-AAGGCCTTTCTTGCGAAACCAAAGCATCAATAT-GATGTATCCTAATGAGAAGACTATGTTTA * * * * 1432462 TGGTGCTTTATCCTAAAAAGAATG 447 TGGTGCCTAATCCTGAAAAGAACG 1432486 GGGATTAGTAAGACTATTCATGTTTGTCTTATTTAAGAAATAAACTTCTATTCTATCAAAAATGG 1 GGGATTAGTAAGACTATTCATGTTTGTCTTATTTAAGAAATAAACTT-TATTCTATCAAAAATGG * * * 1432551 TGGAAAGAAAAGCTTTTCTTGGGACGCCAAAGCATTAATGTCACGTCTCCTAATGAAGGGAATGT 65 TGAAAAGAAAAGCTTTTCTTGCGACGCCAAAGCATTAATGTCATGTCTCCTAATGAAGGGAATGT * * * * 1432616 GTTTTGGCTTCCTAGCTTGAAAAGATAGAGACTGTTACGAGAATCGATGCATGTTTTATTTAGGG 130 GTTTTGGCTTCCTAGCTTGAAAAGATA-AAACTGTTACGAGAATCGATGCTTATTTTATTTAAGG * 1432681 GATGACCTTTGACTTTT-AGGAAAATAGGGCAAAAAAAAGATTTTCATGCAAAAGAAAATCATCA 194 GATGACCTTTG-CTTTTAAGGAAAATAGGGCAAAGAAAAGA-TTTCATGCAAAA-AAAATCATCA * * * * 1432745 ATATGACTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATTGCAAAATGAATGAAGATCAG 256 ATATAACTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCGCAAAATAAATGAAGATCAC * * 1432810 TAGTAAAATCCATGTTTGTCCTCATTTGA-GTCAGGAACTTAGACTTTACAAAAATTGGTGGGTA 321 TAGTAGAATCCATGTTTGT-CTCATTTGAGGT-AAGAACTTAGACTTTACAAAAATTGGTGGGTA * * * 1432874 AAAGGCTTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAATGAGACA-ACTATGATTAT 384 AAAGGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGA-AGACTATGTTTAT * * 1432938 GGTGGCTAATCCTGAAAAAAACG 448 GGTGCCTAATCCTGAAAAGAACG * * * ** 1432961 GGGATTAGTATA-AGTATTCATGTTTGTCTTATCTAAGAGATAAACTTTAATTAAATCAAAAATG 1 GGGATTAGTA-AGACTATTCATGTTTGTCTTATTTAAGAAATAAACTTT-ATTCTATCAAAAATG * * * * 1433025 GTGGAAAG-AAAGCTTTTCTTTCGACACCAAAGCATCT-ATGTCATGTATCCTAATGAATGGGAA 64 GTGAAAAGAAAAGCTTTTCTTGCGACGCCAAAGCAT-TAATGTCATGTCTCCTAATGAA-GGGAA * * * 1433088 TGTATTTTGGCTTTCCAATCTTGAAAAGA 127 TGTGTTTTGGC-TTCCTAGCTTGAAAAGA 1433117 ATGGAGATGA Statistics Matches: 969, Mismatches: 107, Indels: 56 0.86 0.09 0.05 Matches are distributed among these distances: 471 1 0.00 472 68 0.07 473 40 0.04 474 574 0.59 475 262 0.27 476 24 0.02 ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31 Consensus pattern (470 bp): GGGATTAGTAAGACTATTCATGTTTGTCTTATTTAAGAAATAAACTTTATTCTATCAAAAATGGT GAAAAGAAAAGCTTTTCTTGCGACGCCAAAGCATTAATGTCATGTCTCCTAATGAAGGGAATGTG TTTTGGCTTCCTAGCTTGAAAAGATAAAACTGTTACGAGAATCGATGCTTATTTTATTTAAGGGA TGACCTTTGCTTTTAAGGAAAATAGGGCAAAGAAAAGATTTCATGCAAAAAAAATCATCAATATA ACTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCGCAAAATAAATGAAGATCACTAGTA GAATCCATGTTTGTCTCATTTGAGGTAAGAACTTAGACTTTACAAAAATTGGTGGGTAAAAGGCC TTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA ATCCTGAAAAGAACG Found at i:1434740 original size:469 final size:468 Alignment explanation
Indices: 1433120--1434904 Score: 1817 Period size: 469 Copynumber: 3.8 Consensus size: 468 1433110 GAAAAGAATG * * * * * * * 1433120 GAGATGAACTTTGATTTTAAGGAAAATAAGACAAATAAAAGATTTCTAAGCAAATGAAAATCATC 1 GAGATGAACTTTGATTTTAAGGAGAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATC * * * 1433185 AATATCGTTTATCCTAATGTGGAGAATGTGTTTATAGTGCCTAATAACAAAATGAATGAAGATCA 66 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA * * * * * * * * * * 1433250 ATACTAGAATCCTTGTTTATCTCACTTGAGGCAAAAACTTAGA-TTCTCCAAAAAATGGTGGGAA 131 TTAGTAAAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTT-TACAAAAATTGGTGAGAA * * * * * * * 1433314 AAAAGCCTTTCCTGCGAAACGAAAGCATCAATATGATGTATCCTAATGACAGGACTGTGTTTATG 195 AAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCATAATGAGAAGACTATGTTTATG * * * * * * * 1433379 GTGCCTAATCTTAAAAAGAATGAGGATTA-T-TTAGTGTTCATGTTTGTTTTATTTAAGAGATAA 260 GTGCCTAATCCTAAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTTATATAAGAGACAA * * * * * 1433442 ACATTGATTCTATCAAAAACGATGGAAAGAAAAGGTTTTCTTGCGACACCAAAGCATCAATGTCT 325 ACTTTGATTCTATCAAAAACGGTAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCA * * ** 1433507 TGTAACCTAATGAAGGGA--ACGTGTTTTGGCTTCCCAATCTTGAAGAGATTAAAGACTGCTACG 390 TGTAACCTAATGAAGGGACTATGT-TTTTGG-TTCCTAATCTT----A-A--AAAGACTATTACG 1433570 AGAATCGATGCTTGTCTTATTTA 446 AGAATCGATGCTTGTCTTATTTA * * * * 1433593 -AGGTATGAACTTTAATTTT-------A-A--G----GAAAAGTTTTTCTTGCAAAA-AGAAATC 1 GA-G-ATGAACTTTGATTTTAAGGAGAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA-AAATC * * * * * * 1433642 ATCAATAGT-ATTTACCCTAATGAGGAGAACGTGTTTACAAT-ACTGATTCACAAAATGAATGAA 63 ATCAATA-TCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT-AATCACAAAATGAATGAA * * * 1433705 AATCATTA-CAAGAATCCATGTTTGTCTCATTTGAGGCACAAATTTAGACTTTACAAAAATTGGT 126 GATCATTAGTAA-AATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGT * * * 1433769 GGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTAT-ACTAATGAGAAGACTAAG 190 GAGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCA-TAATGAGAAGACTATG * * * * 1433833 TTTATGGTGTCTAATCCTGAAAATAATGGGGATTAGTATGACTATTCATGTTTGTCTTATATAAG 254 TTTATGGTGCCTAATCCTAAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTTATATAAG * * * * * * 1433898 AAACAAACTTTGTTTCTATCAAATATGGTAGAAGGAAAAGCTTTTCTTGCGACTCCAAAGCATCA 319 AGACAAACTTTGATTCTATCAAAAACGGTAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCA * * * 1433963 AT-TCATGTACCCTAATGAAGGGACTGTGTTTTTGGTTCCTAATCTTAAAAAGAATAGAGACTGT 384 ATGTCATGTAACCTAATGAAGGGACTATGTTTTTGGTTCCTAATCTTAAAAAGACT----A-T-T ** 1434027 CACGAGAATTTATGCTTGTCTTATTTA 443 -ACGAGAATCGATGCTTGTCTTATTTA * * * * ** 1434054 AAGGATGAACTTTGGTTTTAAAGAGAATAGGGCAAAGAAAAGATTTCCGTGCAATTGAAAATCAT 1 GA-GATGAACTTTGATTTTAAGGAGAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAT * * ** * * 1434119 CAGTATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCGTAAAATAAATAAAGATC 65 CAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATC * * ** * * * * * 1434184 ACTAGTAGAATCTGTGTTTGTCTTATTTGAGGGACGAACTTAAACTTCACAAAAATTGGTGAGAA 130 ATTAGTAAAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGAGAA * * * * ** * 1434249 GAAAGCCTTTGTTGCGAAACCAAAGCTTCAATATCG-TGTATCATAATGAGATTACTATGTTCAT 195 AAAAGCCTTTCTTGCAAAACCAAAGCATCAATAT-GATGTATCATAATGAGAAGACTATGTTTAT * * * * * 1434313 GGTGCCTAGTCTTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTGTTATATAAGAGACA 259 GGTGCCTAATCCTAAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTTATATAAGAGACA * * * * 1434378 AACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGGCACAAAAGCATCAATGTC 324 AACTTTGATTCTATCAAAAACGGTAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC ** * * * 1434443 ATGTGTCCTAATGAATGGACTATGTTTTTAGTTCCTAATCTTAAAAAGACTATTATGAGAATCGA 389 ATGTAACCTAATGAAGGGACTATGTTTTTGGTTCCTAATCTTAAAAAGACTATTACGAGAATCGA * 1434508 TGCTTATCTTATTTA 454 TGCTTGTCTTATTTA * * 1434523 TGAGATGAAATTTGATTTTAAGGAGAATAGGGCAAAGAAAAGATTTCCATGCAAAACAAAATCAT 1 -GAGATGAACTTTGATTTTAAGGAGAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAT * * * 1434588 CAATATCACTTATCCTAATGAGGAGAATGTGTTTATAGTGGCTAATCACAAAATCAATGAAGATC 65 CAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATC * * * * 1434653 ATTAGTAAAATCCATGTTTGTCTC-TTTTATTGCACGAACTTAGACTTTACGAAAATTGGTGAGA 130 ATTAGTAAAATCCATGTTTGTCTCATTTGA-GGCACAAACTTAGACTTTACAAAAATTGGTGAGA * * * * * 1434717 AAAAAACCTCTCTTGCAAAACCAAAGTATCAATATGATGTATCCTAATAAGAAGACTATGTTTAT 194 AAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCATAATGAGAAGACTATGTTTAT * ** * * * * * * 1434782 GCTGCCTAATCCTAAAAAGAAAAAGGATTAGTATGAGTATTCATGCTTATCTTATTTAAAAGATA 259 GGTGCCTAATCCTAAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTTATATAAGAGACA * * ** * 1434847 AACTATGATTCAATCAAAAATAGTAGAAAGAAAAGCTTTTCTTGTGACACCAAAGCAT 324 AACTTTGATTCTATCAAAAACGGTAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT 1434905 TAGTGTGATG Statistics Matches: 1075, Mismatches: 193, Indels: 92 0.79 0.14 0.07 Matches are distributed among these distances: 454 6 0.01 456 1 0.00 457 1 0.00 459 4 0.00 460 200 0.19 461 70 0.07 462 87 0.08 463 2 0.00 466 1 0.00 467 1 0.00 468 6 0.01 469 336 0.31 470 2 0.00 471 2 0.00 472 2 0.00 473 1 0.00 474 15 0.01 475 285 0.27 476 53 0.05 ACGTcount: A:0.37, C:0.14, G:0.18, T:0.32 Consensus pattern (468 bp): GAGATGAACTTTGATTTTAAGGAGAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATC AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA TTAGTAAAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGAGAAA AAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCATAATGAGAAGACTATGTTTATGG TGCCTAATCCTAAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTTATATAAGAGACAAA CTTTGATTCTATCAAAAACGGTAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAT GTAACCTAATGAAGGGACTATGTTTTTGGTTCCTAATCTTAAAAAGACTATTACGAGAATCGATG CTTGTCTTATTTA Found at i:1435115 original size:19 final size:21 Alignment explanation
Indices: 1435078--1435121 Score: 65 Period size: 19 Copynumber: 2.1 Consensus size: 21 1435068 GTTAAGTATA 1435078 AATGTTTTTCAAGCATAAAAAT 1 AATGTTTTTCAAG-ATAAAAAT 1435100 AATG-TTTTCAAG-TAAAAAT 1 AATGTTTTTCAAGATAAAAAT 1435119 AAT 1 AAT 1435122 CCAAAGTATC Statistics Matches: 22, Mismatches: 0, Indels: 3 0.88 0.00 0.12 Matches are distributed among these distances: 19 10 0.45 21 8 0.36 22 4 0.18 ACGTcount: A:0.48, C:0.07, G:0.09, T:0.36 Consensus pattern (21 bp): AATGTTTTTCAAGATAAAAAT Found at i:1435389 original size:33 final size:33 Alignment explanation
Indices: 1435347--1435487 Score: 282 Period size: 33 Copynumber: 4.3 Consensus size: 33 1435337 ATAGTGTGTC 1435347 GATACATTATATCGATACATGGTCAAATGTATT 1 GATACATTATATCGATACATGGTCAAATGTATT 1435380 GATACATTATATCGATACATGGTCAAATGTATT 1 GATACATTATATCGATACATGGTCAAATGTATT 1435413 GATACATTATATCGATACATGGTCAAATGTATT 1 GATACATTATATCGATACATGGTCAAATGTATT 1435446 GATACATTATATCGATACATGGTCAAATGTATT 1 GATACATTATATCGATACATGGTCAAATGTATT 1435479 GATACATTA 1 GATACATTA 1435488 AGCCCAACTC Statistics Matches: 108, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 33 108 1.00 ACGTcount: A:0.37, C:0.12, G:0.15, T:0.36 Consensus pattern (33 bp): GATACATTATATCGATACATGGTCAAATGTATT Found at i:1439846 original size:19 final size:20 Alignment explanation
Indices: 1439802--1439847 Score: 58 Period size: 20 Copynumber: 2.4 Consensus size: 20 1439792 ACACCCAAAT * 1439802 GTATCGATACATATTACTTA 1 GTATCGATACATACTACTTA * * 1439822 GTATCGATACATGCT-CTTG 1 GTATCGATACATACTACTTA 1439841 GTATCGA 1 GTATCGA 1439848 AACACAGTAA Statistics Matches: 23, Mismatches: 3, Indels: 1 0.85 0.11 0.04 Matches are distributed among these distances: 19 10 0.43 20 13 0.57 ACGTcount: A:0.28, C:0.17, G:0.17, T:0.37 Consensus pattern (20 bp): GTATCGATACATACTACTTA Found at i:1441675 original size:476 final size:475 Alignment explanation
Indices: 1440672--1443083 Score: 2882 Period size: 476 Copynumber: 5.1 Consensus size: 475 1440662 AGGGAATGTG * * ** ** * * 1440672 TTTTGGTTTCCCAATCTTG-AAA-AATGTAGACTGTTACAAGAATTGATGCTTATCTTATTTAAA 1 TTTTGG-TTCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCAATGCTTGTCTTATTTAAG * * * * * 1440735 GGATGAACATTCATTTTAAGCAAAATAGGGCAAA-AAAAGGATTTCGAAGCAAAAGCAAGTCATC 65 GGATGAACATTCATTTTAAGCAAAATAGGGCAAAGAAAA-GATTTCTATGCAAAAGAAAATCATT * * * * * 1440799 AAAATCACTTATCCAAATGAGGAAAATGTGTTTATGGTGCTTAATCACAAAATGAATTAACATCA 129 AAAATCACTTATCCAAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCA * * * 1440864 TTAGTAGAATCCATGTTTGTCTCATTTAAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAA 194 TTAGTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAA * * 1440929 AAAGCCTTTCTTGAAAAACCAAAGCATCAATATGATGTATCCTATTGAGAAGACTATGTTTATGG 259 AAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGG * ** * * 1440994 TGCCTAATCTTGAAAGGAATAGGGATTAGTATGAGTATTAATGTTTGTCTTATTTAAAAGACAAA 324 TGCCTAATCCTGAAAAAAATGGGGATTAGTATGACTATTAATGTTTGTCTTATTTAAAAGACAAA * * ** 1441059 TTTTGATTTCATTAAAAATGAAGGAAAGAAAAGCTTTTCTTGCGATAGAAAAGCATTAATGTCAT 389 TTTTGATTT-ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGATAGAAAAGCATTAATGTCAT * * 1441124 GTATTCTAATGAAAGGAATGCAT 453 GTATCCTAATGAAGGGAATGCAT ** * * * 1441147 TTTCAGTTCCAAATCTTGAAAAGAATGGAGACTT-TTACGAGAATAAATGCTTGTCTTATTTAAG 1 TTTTGGTTCCCAATCTTGAAAAGAATGGAGA-TTGTTATGAGAATCAATGCTTGTCTTATTTAAG * 1441211 GGATGAACATTTATTTTAAGCAAAATAGGGCAAAGAAAAGATTTCTATGCAAAAGAAAATCATTA 65 GGATGAACATTCATTTTAAGCAAAATAGGGCAAAGAAAAGATTTCTATGCAAAAGAAAATCATTA * * * * * 1441276 ATATCACTTATCCTAATAAAGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATAAAGATCAT 130 AAATCACTTATCCAAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCAT * * * * * * * * * 1441341 CAATAGAATCCAAGCTTATCTCATTTGAGGCATGAACTTACAGTTTACAAAAATTGGTGAGAAGA 195 TAGTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAA * * * * * 1441406 AAGCCTTTCTTGCAAAACCAAATCTTCAATATCATGTATCCTAATGAGATGACTATGTTCATGGT 260 AAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGT * * * * * * * * * 1441471 GCCTAGTCTTGAAAAAAATGGGGATTATTATGACTATTCATGTTTGTCTTATATGAGAGATAAAC 325 GCCTAATCCTGAAAAAAATGGGGATTAGTATGACTATTAATGTTTGTCTTATTTAAAAGACAAAT * ** * * * * 1441536 TTTGATTCTATCAAAAACGGTGGAAAGAAGATTTTTTCTTGCGACATAAAAGCATCAATATCATG 390 TTTGATT-TATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGATAGAAAAGCATTAATGTCATG * * ** 1441601 TATCATAATGAAGGGACTGTGT 454 TATCCTAATGAAGGGAATGCAT ** * * * ** * * 1441623 TTTTTATTCCCAATCTTTAAAAAAATAGAGATTGTTATGAGAATTGATGCTTGTCTTATTTGAGA 1 TTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCAATGCTTGTCTTATTTAAGG * * * 1441688 GATGAACATTCATTTTAAGCAAAATAGGGCAAAGAAAAGATGTCAATGCAAGAA-AAAATCATCA 66 GATGAACATTCATTTTAAGCAAAATAGGGCAAAGAAAAGATTTCTATGCAA-AAGAAAATCATTA * * * 1441752 AAATCACTTATCCAAATGAGGAGAATGTGTTTATAGTGCCTAAGCACAAAATGAATGCAA-ATTA 130 AAATCACTTATCCAAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT-AAAGATCA * * * * * * 1441816 TTAGTAGAATCCATGTTTGTCTTATTTAAGGCACGGATTTGGACTTTACAAAAATTGGTGGGAAA 194 TTAGTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAA * * * 1441881 AAAGCTTTTGTTGCAAAACCAAAGCATCAATATGATATATCCTAATGAGAAGACTATGTTTATGG 259 AAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGG * * * * 1441946 TGCCTAATCCTGAAAAGAATGGGGATTAATATAAGTATTAATGTTTGTCTTATTTAAAAGACAAA 324 TGCCTAATCCTGAAAAAAATGGGGATTAGTATGACTATTAATGTTTGTCTTATTTAAAAGACAAA * ** * * 1442011 CTTTGATTTTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGATAGCTAAGCATTGAGGTCAT 389 TTTTGA-TTTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGATAGAAAAGCATTAATGTCAT * * 1442076 GTGTCCTAATGAAGAGAATGCAT 453 GTATCCTAATGAAGGGAATGCAT * 1442099 TTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCAATG-TTAGTCTTATTTAAG 1 TTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCAATGCTT-GTCTTATTTAAG * * * * * * * * ** 1442163 GTAAGAACTTTGATTTAAAGGAAAATAGGGCAAAAAAAAGATTTCTTTGTGAAAGAAAATCA-T- 65 GGATGAACATTCATTTTAAGCAAAATAGGGCAAAGAAAAGATTTCTATGCAAAAGAAAATCATTA * * * * * * * * 1442226 CAATCATTTATCCAAATGAGGAAAATGTATTCATAGTGCCTAATCATAAAATGAATGAAGATCTT 130 AAATCACTTATCCAAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCAT * * * 1442291 TACTAGAATCCATA-TTTGTCTCATTTGAGGTAC-ACACTTAGACTTTACAAAAATTAGT-GGAA 195 TAGTAGAATCCA-AGTTTGTCTCATTTGAGGCACGA-ACTTAGACTTTACAAAAATTGGTGGGAA * * * 1442353 AAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCATATTGAGAAGACTATGTTTGTG 258 AAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATG * * * * * 1442418 TTGCCTAATCCT-CAAAAAATGGGGATTAGTATGATTATTAATGTTTAG-GTTATTTAAAAGATA 323 GTGCCTAATCCTGAAAAAAATGGGGATTAGTATGACTATTAATGTTT-GTCTTATTTAAAAGACA * * * 1442481 AATTTTGATTTCATCAAAAATGATGGAAATAAAAGCTTTTCTTGCGATAGAAAAGCATTAATGTC 387 AATTTTGATTT-ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGATAGAAAAGCATTAATGTC * * 1442546 ATGTATCCTAATGAAAGCAATGCAT 451 ATGTATCCTAATGAAGGGAATGCAT * 1442571 TTTTGGTTCCCAATCTTGAAAAGAATGGAGACTT-TTATGAGAATCAATGCTTATCTTATTTAAG 1 TTTTGGTTCCCAATCTTGAAAAGAATGGAGA-TTGTTATGAGAATCAATGCTTGTCTTATTTAAG * 1442635 GGATGAAC-TTCCATTTTAAGCAAAATAGGGCAAAGAAGAGATTTCTATGCAAAAGAAAATCATT 65 GGATGAACATT-CATTTTAAGCAAAATAGGGCAAAGAAAAGATTTCTATGCAAAAGAAAATCATT * * * * * * * * 1442699 AATATCTCATATTCTAGTAAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATAAAGATCA 129 AAAATCACTTATCCAAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCA * * * * * * 1442764 TTGGTAGAATCCAAGCTTGTCTCATTTGAGGCATGAACTTATATTTTACAAAAATTGGTGGGAAG 194 TTAGTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAA * * * 1442829 AAAGCCTTTCTTGCAAAACCAAAGCTTCAATATTG-TGTATCCTAATGAGATGACTATGTTCATG 259 AAAGCCTTTCTTGCAAAACCAAAGCATCAATA-TGATGTATCCTAATGAGAAGACTATGTTTATG * ** * 1442893 GTGCCTAGTCCTGAAAAAAATGGGGATTAGTATGACTACTT-ATGTTTGTCTTACATAAGAGACA 323 GTGCCTAATCCTGAAAAAAATGGGGATTAGTATGACTA-TTAATGTTTGTCTTATTTAAAAGACA * * * ** * 1442957 AATTTTGATTTTATCAAAAACGGTGGAAAGAAAATCTTTTCTTGCGACACAAAAGCATCGATATC 387 AATTTTGA-TTTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGATAGAAAAGCATTAATGTC * ** 1443022 ATGTATCTTAATGAA-GGAACTGTGT 451 ATGTATCCTAATGAAGGGAA-TGCAT * 1443047 TTTTGGTTCCCAATCTTGAAAAGAATAGAGATTGTTA 1 TTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTA 1443084 CTGTAGACAC Statistics Matches: 1623, Mismatches: 283, Indels: 61 0.83 0.14 0.03 Matches are distributed among these distances: 471 5 0.00 472 222 0.14 473 82 0.05 474 205 0.13 475 89 0.05 476 1003 0.62 477 17 0.01 ACGTcount: A:0.38, C:0.13, G:0.18, T:0.32 Consensus pattern (475 bp): TTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCAATGCTTGTCTTATTTAAGG GATGAACATTCATTTTAAGCAAAATAGGGCAAAGAAAAGATTTCTATGCAAAAGAAAATCATTAA AATCACTTATCCAAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCATT AGTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAA AGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTG CCTAATCCTGAAAAAAATGGGGATTAGTATGACTATTAATGTTTGTCTTATTTAAAAGACAAATT TTGATTTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGATAGAAAAGCATTAATGTCATGTA TCCTAATGAAGGGAATGCAT Found at i:1443447 original size:32 final size:32 Alignment explanation
Indices: 1443406--1443468 Score: 117 Period size: 32 Copynumber: 2.0 Consensus size: 32 1443396 ATCGATACAT * 1443406 TACATAAGTGTTGTATCGATATAATGTATCGA 1 TACATAAGTGTTGTATCGATACAATGTATCGA 1443438 TACATAAGTGTTGTATCGATACAATGTATCG 1 TACATAAGTGTTGTATCGATACAATGTATCG 1443469 CTACGAAGCT Statistics Matches: 30, Mismatches: 1, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 32 30 1.00 ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37 Consensus pattern (32 bp): TACATAAGTGTTGTATCGATACAATGTATCGA Found at i:1443454 original size:19 final size:19 Alignment explanation
Indices: 1443373--1443460 Score: 71 Period size: 19 Copynumber: 4.7 Consensus size: 19 1443363 TTTCAATGAT * * 1443373 TTGTATCGATACAAAAATG 1 TTGTATCGATACATAAGTG 1443392 TTGTATCGATACATTACATAAGTG 1 TTGTATCG----A-TACATAAGTG 1443416 TTGTATCGAT--ATAA--- 1 TTGTATCGATACATAAGTG 1443430 -TGTATCGATACATAAGTG 1 TTGTATCGATACATAAGTG 1443448 TTGTATCGATACA 1 TTGTATCGATACA 1443461 ATGTATCGCT Statistics Matches: 56, Mismatches: 2, Indels: 22 0.70 0.03 0.28 Matches are distributed among these distances: 13 9 0.16 15 4 0.07 17 4 0.07 19 21 0.38 20 1 0.02 23 1 0.02 24 16 0.29 ACGTcount: A:0.35, C:0.11, G:0.17, T:0.36 Consensus pattern (19 bp): TTGTATCGATACATAAGTG Found at i:1443542 original size:12 final size:12 Alignment explanation
Indices: 1443491--1443536 Score: 53 Period size: 12 Copynumber: 4.1 Consensus size: 12 1443481 TGCCAAGAAA 1443491 ATGTATCGATAC 1 ATGTATCGATAC * * 1443503 AT-TACCCA-A- 1 ATGTATCGATAC 1443512 ATGTATCGATAC 1 ATGTATCGATAC 1443524 ATGTATCGATAC 1 ATGTATCGATAC 1443536 A 1 A 1443537 CTTATCTTTG Statistics Matches: 27, Mismatches: 4, Indels: 6 0.73 0.11 0.16 Matches are distributed among these distances: 9 2 0.07 10 5 0.19 11 5 0.19 12 15 0.56 ACGTcount: A:0.37, C:0.20, G:0.13, T:0.30 Consensus pattern (12 bp): ATGTATCGATAC Found at i:1443588 original size:52 final size:53 Alignment explanation
Indices: 1443524--1443673 Score: 216 Period size: 52 Copynumber: 2.9 Consensus size: 53 1443514 GTATCGATAC *** * 1443524 ATGTATCGATACACTTAT-CTTTGTATCGATACATGCAGGAAAATTTGCCCAG 1 ATGTATCGATACACTTATAAAATGTATCGATACATGCAGGCAAATTTGCCCAG * 1443576 ATGTATCGATACAC-TATAAAATGTATCGATACATACAGGCAAATTTGCCCAG 1 ATGTATCGATACACTTATAAAATGTATCGATACATGCAGGCAAATTTGCCCAG * * 1443628 ATGTATCGATACA-TTATGAAATGTATCGATACATGCACGCAAATTT 1 ATGTATCGATACACTTATAAAATGTATCGATACATGCAGGCAAATTT 1443674 TCATATTTCG Statistics Matches: 88, Mismatches: 8, Indels: 4 0.88 0.08 0.04 Matches are distributed among these distances: 51 3 0.03 52 85 0.97 ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31 Consensus pattern (53 bp): ATGTATCGATACACTTATAAAATGTATCGATACATGCAGGCAAATTTGCCCAG Found at i:1457484 original size:42 final size:39 Alignment explanation
Indices: 1457438--1457542 Score: 99 Period size: 39 Copynumber: 2.7 Consensus size: 39 1457428 GGCGTCCTCC * * 1457438 ACAAAAAAAAAAACCAAATAAACAAAAGAAAAGAAGAAAAAA 1 ACAAAAAAAAAAA-CAAA-AAACAAAA-AAAAAAACAAAAAA * 1457480 AC-AAACAAAAAACAAAAAACAAAAAAAAAAACAAAGAAA 1 ACAAAAAAAAAAACAAAAAACAAAAAAAAAAACAAA-AAA * * * 1457519 A-AAAAACAATAAC-AACAACAAAAA 1 ACAAAAAAAAAAACAAAAAACAAAAA 1457543 GGGTCCAGAT Statistics Matches: 54, Mismatches: 7, Indels: 8 0.78 0.10 0.12 Matches are distributed among these distances: 38 19 0.35 39 20 0.37 40 4 0.07 41 9 0.17 42 2 0.04 ACGTcount: A:0.82, C:0.12, G:0.04, T:0.02 Consensus pattern (39 bp): ACAAAAAAAAAAACAAAAAACAAAAAAAAAAACAAAAAA Found at i:1457491 original size:12 final size:11 Alignment explanation
Indices: 1457438--1457542 Score: 65 Period size: 11 Copynumber: 9.6 Consensus size: 11 1457428 GGCGTCCTCC 1457438 ACAAAAAAAAA 1 ACAAAAAAAAA ** * 1457449 A-ACCAAATAA 1 ACAAAAAAAAA * 1457459 AC-AAAAGAAA 1 ACAAAAAAAAA * * 1457469 AGAAGAAAAAA 1 ACAAAAAAAAA * 1457480 ACAAACAAAAA 1 ACAAAAAAAAA 1457491 ACAAAAAACAAA 1 ACAAAAAA-AAA 1457503 A-AAAAAAACAA 1 ACAAAAAAA-AA * 1457514 A-GAAAAAAAA 1 ACAAAAAAAAA * * 1457524 ACAATAACAACA 1 ACAA-AAAAAAA 1457536 ACAAAAA 1 ACAAAAA 1457543 GGGTCCAGAT Statistics Matches: 69, Mismatches: 19, Indels: 12 0.69 0.19 0.12 Matches are distributed among these distances: 10 16 0.23 11 40 0.58 12 13 0.19 ACGTcount: A:0.82, C:0.12, G:0.04, T:0.02 Consensus pattern (11 bp): ACAAAAAAAAA Found at i:1457508 original size:30 final size:31 Alignment explanation
Indices: 1457440--1457521 Score: 98 Period size: 30 Copynumber: 2.6 Consensus size: 31 1457430 CGTCCTCCAC * 1457440 AAAAAAAAA-AACCAAATAAACAAAAGAAAAG 1 AAAAAAAAACAAACAAA-AAACAAAAGAAAAG 1457471 AAGAAAAAAACAAACAAAAAACAAAA-AACAA- 1 AA-AAAAAAACAAACAAAAAACAAAAGAA-AAG * 1457502 AAAAAAAAACAAAGAAAAAA 1 AAAAAAAAACAAACAAAAAA 1457522 AAACAATAAC Statistics Matches: 46, Mismatches: 2, Indels: 7 0.84 0.04 0.13 Matches are distributed among these distances: 30 17 0.37 31 6 0.13 32 17 0.37 33 6 0.13 ACGTcount: A:0.84, C:0.10, G:0.05, T:0.01 Consensus pattern (31 bp): AAAAAAAAACAAACAAAAAACAAAAGAAAAG Found at i:1457525 original size:26 final size:25 Alignment explanation
Indices: 1457440--1457542 Score: 91 Period size: 26 Copynumber: 4.1 Consensus size: 25 1457430 CGTCCTCCAC ** * 1457440 AAAAAAAAA-AACCAAATAAACAAA 1 AAAAAAAAACAAAAAAAAAAACAAA * * * * 1457464 AGAAAAGAAGAAAAAAACAAACAAA 1 AAAAAAAAACAAAAAAAAAAACAAA 1457489 AAACAAAAAACAAAAAAAAAAACAAA 1 AAA-AAAAAACAAAAAAAAAAACAAA * * * 1457515 GAAAAAAAAACAATAACAACAACAAA 1 -AAAAAAAAACAAAAAAAAAAACAAA 1457541 AA 1 AA 1457543 GGGTCCAGAT Statistics Matches: 64, Mismatches: 12, Indels: 5 0.79 0.15 0.06 Matches are distributed among these distances: 24 7 0.11 25 16 0.25 26 38 0.59 27 3 0.05 ACGTcount: A:0.83, C:0.12, G:0.04, T:0.02 Consensus pattern (25 bp): AAAAAAAAACAAAAAAAAAAACAAA Found at i:1457533 original size:46 final size:47 Alignment explanation
Indices: 1457438--1457527 Score: 127 Period size: 44 Copynumber: 2.0 Consensus size: 47 1457428 GGCGTCCTCC * 1457438 ACAAAAAA-AAAAACCAAATAAACAAAAGAAAAGAAGAAAAAAACAA 1 ACAAAAAACAAAAAACAAATAAACAAAAGAAAAGAAGAAAAAAACAA 1457484 ACAAAAAACAAAAAACAAA-AAA-AAAA-ACAAAGAA-AAAAAAACAA 1 ACAAAAAACAAAAAACAAATAAACAAAAGA-AAAGAAGAAAAAAACAA 1457528 TAACAACAAC Statistics Matches: 41, Mismatches: 1, Indels: 6 0.85 0.02 0.12 Matches are distributed among these distances: 44 11 0.27 45 10 0.24 46 11 0.27 47 9 0.22 ACGTcount: A:0.83, C:0.11, G:0.04, T:0.01 Consensus pattern (47 bp): ACAAAAAACAAAAAACAAATAAACAAAAGAAAAGAAGAAAAAAACAA Found at i:1457542 original size:1 final size:1 Alignment explanation
Indices: 1457440--1457524 Score: 53 Period size: 1 Copynumber: 85.0 Consensus size: 1 1457430 CGTCCTCCAC ** * * * * * * * * * 1457440 AAAAAAAAAAACCAAATAAACAAAAGAAAAGAAGAAAAAAACAAACAAAAAACAAAAAACAAAAA 1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA * * 1457505 AAAAAACAAAGAAAAAAAAA 1 AAAAAAAAAAAAAAAAAAAA 1457525 CAATAACAAC Statistics Matches: 60, Mismatches: 24, Indels: 0 0.71 0.29 0.00 Matches are distributed among these distances: 1 60 1.00 ACGTcount: A:0.85, C:0.09, G:0.05, T:0.01 Consensus pattern (1 bp): A Found at i:1459182 original size:34 final size:34 Alignment explanation
Indices: 1459044--1459205 Score: 147 Period size: 33 Copynumber: 4.8 Consensus size: 34 1459034 AAACCTTCAA * 1459044 AAGCCCACAAGT-TCGTGGCA-TCTTTTTCCTTTT 1 AAGCCCACAACTCT-GTGGCACTCTTTTTCCTTTT * ** * 1459077 AAGCCCATAACTCCATGGCAC-C-TTTTCTTTTTT 1 AAGCCCACAACTCTGTGGCACTCTTTTTC-CTTTT * * 1459110 AAGTCCACAACTCTGTGGCACTCATTTTT-TTTTGT 1 AAGCCCACAACTCTGTGGCACTC-TTTTTCCTTT-T 1459145 AAGCCCACAACTCTGTGGCACTCTTTTTCCTTTT 1 AAGCCCACAACTCTGTGGCACTCTTTTTCCTTTT * * * 1459179 AAGCCTACAAGT-TAGTGGCACCCTTTT 1 AAGCCCACAACTCT-GTGGCACTCTTTT 1459206 CAAAAGTGCA Statistics Matches: 106, Mismatches: 14, Indels: 17 0.77 0.10 0.12 Matches are distributed among these distances: 32 5 0.05 33 38 0.36 34 33 0.31 35 26 0.25 36 4 0.04 ACGTcount: A:0.20, C:0.28, G:0.14, T:0.38 Consensus pattern (34 bp): AAGCCCACAACTCTGTGGCACTCTTTTTCCTTTT Found at i:1459522 original size:48 final size:49 Alignment explanation
Indices: 1459457--1459754 Score: 201 Period size: 52 Copynumber: 6.0 Consensus size: 49 1459447 CCTTTTTCTT * * 1459457 ATCTTTAA-ACCCAATGTCGCTGGCCTTGAATCAGCATATTGGTGCCTTT 1 ATCTTTAAGA-CCAATGTCGCTGGCCTTGAATCAGCATATTGGCGCCTTC * * * * 1459506 GTC-TT-AGTACCAATGTCGCTGGCCTTGAATCAGCACATTAGCACCTTC 1 ATCTTTAAG-ACCAATGTCGCTGGCCTTGAATCAGCATATTGGCGCCTTC * 1459554 ATCTTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTC 1 ATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCGCC-T--TC * * * * ** * * * 1459606 ATCTTTAAAACCCAATGTTGATTGGCATTGTCTCAACACATT-G-GCATTC 1 ATCTTTAAGA-CCAATGTCG-CTGGCCTTGAATCAGCATATTGGCGCCTTC * * * * * * * * * 1459655 TTCTTCAAGTCTAATGTCGCTGGCCATGAATCAGCACATTGTCATTCTTCTC 1 ATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGC--GCCT-TC * * * * * 1459707 ATCTTTAAGCCCAATATCACTGGTCTTGAATCAGCATATTGGCACCTT 1 ATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCGCCTT 1459755 TATCACTCTT Statistics Matches: 187, Mismatches: 48, Indels: 28 0.71 0.18 0.11 Matches are distributed among these distances: 47 16 0.09 48 45 0.24 49 47 0.25 50 5 0.03 51 3 0.02 52 48 0.26 53 8 0.04 54 15 0.08 ACGTcount: A:0.24, C:0.26, G:0.17, T:0.33 Consensus pattern (49 bp): ATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCGCCTTC Found at i:1460382 original size:13 final size:13 Alignment explanation
Indices: 1460364--1460420 Score: 51 Period size: 13 Copynumber: 3.9 Consensus size: 13 1460354 ACAAAAATGT 1460364 TGTATCGATACAA 1 TGTATCGATACAA * 1460377 TGTATCAATACATAA 1 TGTATCGATAC--AA 1460392 GTGTTGTATCGATACAA 1 ----TGTATCGATACAA 1460409 TGTATCGATACA 1 TGTATCGATACA 1460421 TAAGTGTTAT Statistics Matches: 36, Mismatches: 2, Indels: 12 0.72 0.04 0.24 Matches are distributed among these distances: 13 22 0.61 15 2 0.06 17 2 0.06 19 10 0.28 ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33 Consensus pattern (13 bp): TGTATCGATACAA Found at i:1460397 original size:32 final size:32 Alignment explanation
Indices: 1460352--1460442 Score: 128 Period size: 32 Copynumber: 2.8 Consensus size: 32 1460342 ATTTGTACCG * * 1460352 ATACAAAAATGTTGTATCGATACAATGTATCA 1 ATACATAAGTGTTGTATCGATACAATGTATCA * 1460384 ATACATAAGTGTTGTATCGATACAATGTATCG 1 ATACATAAGTGTTGTATCGATACAATGTATCA 1460416 ATACATAAGTGTTATTGTATCGATACA 1 ATACATAAGTG---TTGTATCGATACA 1460443 TAAGTTTGTA Statistics Matches: 53, Mismatches: 3, Indels: 3 0.90 0.05 0.05 Matches are distributed among these distances: 32 40 0.75 35 13 0.25 ACGTcount: A:0.38, C:0.12, G:0.15, T:0.34 Consensus pattern (32 bp): ATACATAAGTGTTGTATCGATACAATGTATCA Found at i:1460637 original size:52 final size:52 Alignment explanation
Indices: 1460546--1460673 Score: 195 Period size: 52 Copynumber: 2.5 Consensus size: 52 1460536 CACTAATCTT * * 1460546 TGTATCGATACATGTA-GAAAATTTGCCCAGATGTATCGATACACTATAAAA 1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA * * * 1460597 TGTATCGATACATACAGGCAAATTTGCCCAGATGTATCGATACATTATGAAA 1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA * 1460649 TGTTTCGATACATGCAGGCAAATTT 1 TGTATCGATACATGCAGGCAAATTT 1460674 TCATATTTCG Statistics Matches: 69, Mismatches: 7, Indels: 1 0.90 0.09 0.01 Matches are distributed among these distances: 51 14 0.20 52 55 0.80 ACGTcount: A:0.36, C:0.16, G:0.17, T:0.30 Consensus pattern (52 bp): TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA Found at i:1466231 original size:42 final size:42 Alignment explanation
Indices: 1466170--1466284 Score: 187 Period size: 42 Copynumber: 2.7 Consensus size: 42 1466160 TAGCCCTCAA * 1466170 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG 1 AGAGATAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG * * 1466212 AGAGATAGAAGAGATAGGAGGGATGATAAGAGGAGAGACAGG 1 AGAGATAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG 1466254 AGAGATA-ATAGAGAGAGGAGGGATGATAGGA 1 AGAGATAGA-AGAGAGAGGAGGGATGATAGGA 1466285 AGAGGAGAGA Statistics Matches: 67, Mismatches: 5, Indels: 2 0.91 0.07 0.03 Matches are distributed among these distances: 41 1 0.01 42 66 0.99 ACGTcount: A:0.45, C:0.02, G:0.44, T:0.09 Consensus pattern (42 bp): AGAGATAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG Found at i:1466272 original size:18 final size:18 Alignment explanation
Indices: 1466245--1466294 Score: 57 Period size: 18 Copynumber: 2.8 Consensus size: 18 1466235 TGATAAGAGG * 1466245 AGAGACAGGAGAGATAAT 1 AGAGAGAGGAGAGATAAT * * 1466263 AGAGAGAGGAGGGATGAT 1 AGAGAGAGGAGAGATAAT 1466281 AG-GAAGAGGAGAGA 1 AGAG-AGAGGAGAGA 1466295 AGAAGATGGA Statistics Matches: 27, Mismatches: 4, Indels: 2 0.82 0.12 0.06 Matches are distributed among these distances: 17 1 0.04 18 26 0.96 ACGTcount: A:0.46, C:0.02, G:0.44, T:0.08 Consensus pattern (18 bp): AGAGAGAGGAGAGATAAT Found at i:1472268 original size:42 final size:42 Alignment explanation
Indices: 1472213--1472331 Score: 193 Period size: 42 Copynumber: 2.8 Consensus size: 42 1472203 TTCTTCTCTC * * 1472213 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT 1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT * 1472255 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT 1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT * * 1472297 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT 1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT 1472332 TTGAGGGCTA Statistics Matches: 71, Mismatches: 6, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 42 71 1.00 ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43 Consensus pattern (42 bp): CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT Found at i:1472272 original size:12 final size:11 Alignment explanation
Indices: 1472246--1472321 Score: 52 Period size: 12 Copynumber: 6.9 Consensus size: 11 1472236 TCTATTATCT * 1472246 CTCCTGTCTCTC 1 CTCCTATCTC-C 1472258 CTCCTATCATCC 1 CTCCTATC-TCC 1472270 CTCCTATCT-- 1 CTCCTATCTCC * 1472279 CTACTATCT-- 1 CTCCTATCTCC * 1472288 CTCCTGTCTCTC 1 CTCCTATCTC-C 1472300 CTCCTATCATCC 1 CTCCTATC-TCC * 1472312 CTCCTCTCTC 1 CTCCTATCTC 1472322 TTCTTTCTCT Statistics Matches: 53, Mismatches: 6, Indels: 11 0.76 0.09 0.16 Matches are distributed among these distances: 9 15 0.28 11 3 0.06 12 31 0.58 13 4 0.08 ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39 Consensus pattern (11 bp): CTCCTATCTCC Found at i:1472273 original size:24 final size:24 Alignment explanation
Indices: 1472237--1472322 Score: 85 Period size: 24 Copynumber: 3.8 Consensus size: 24 1472227 CCTCCTCTCT * * 1472237 CTATTATCTCTCCTGTCTCTCCTC 1 CTATCATCCCTCCTGTCTCTCCTC * * 1472261 CTATCATCCCTCC--TATCT-CTA 1 CTATCATCCCTCCTGTCTCTCCTC 1472282 CTATC-T--CTCCTGTCTCTCCTC 1 CTATCATCCCTCCTGTCTCTCCTC * 1472303 CTATCATCCCTCCTCTCTCT 1 CTATCATCCCTCCTGTCTCT 1472323 TCTTTCTCTT Statistics Matches: 49, Mismatches: 7, Indels: 12 0.72 0.10 0.18 Matches are distributed among these distances: 18 4 0.08 20 5 0.10 21 14 0.29 22 5 0.10 24 21 0.43 ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42 Consensus pattern (24 bp): CTATCATCCCTCCTGTCTCTCCTC Found at i:1472297 original size:18 final size:18 Alignment explanation
Indices: 1472228--1472298 Score: 52 Period size: 18 Copynumber: 3.6 Consensus size: 18 1472218 CCTGTCATCC * * 1472228 CTCCTCTCTCTATTATCT 1 CTCCTGTCTCTACTATCT * 1472246 CTCCTGTCTCTCCTCCTATCAT 1 CTCCTG--TCT-CTACTATC-T * 1472268 CCCTCCTATCTCTACTATCT 1 --CTCCTGTCTCTACTATCT 1472288 CTCCTGTCTCT 1 CTCCTGTCTCT 1472299 CCTCCTATCA Statistics Matches: 41, Mismatches: 6, Indels: 12 0.69 0.10 0.20 Matches are distributed among these distances: 18 15 0.37 20 4 0.10 21 13 0.32 22 4 0.10 24 5 0.12 ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44 Consensus pattern (18 bp): CTCCTGTCTCTACTATCT Found at i:1473106 original size:19 final size:19 Alignment explanation
Indices: 1473079--1473115 Score: 65 Period size: 19 Copynumber: 1.9 Consensus size: 19 1473069 TTTTTTTTTC 1473079 CTTTCTTTTTGTATTCTTT 1 CTTTCTTTTTGTATTCTTT * 1473098 CTTTTTTTTTGTATTCTT 1 CTTTCTTTTTGTATTCTT 1473116 GAAAAAAAAT Statistics Matches: 17, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 19 17 1.00 ACGTcount: A:0.05, C:0.14, G:0.05, T:0.76 Consensus pattern (19 bp): CTTTCTTTTTGTATTCTTT Found at i:1479928 original size:476 final size:476 Alignment explanation
Indices: 1478906--1483191 Score: 4937 Period size: 476 Copynumber: 9.1 Consensus size: 476 1478896 ACTATTCAAG * * * * ** * * * 1478906 TTTGATTCTATCAAAAACGATGGAAAGAAAACCTTTTTTTGCGGCAGCAAAGCATCAGT-TCAAG 1 TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACAACACCAAAGCATCAATGTCATG * * * * ** 1478970 TATCTTATTGAAGGGAATGTGCTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACAAGAA 66 TATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAA * * * * * * * 1479035 TCGATGCTTATTTGATTTAAGGGATGAGCTTTGATATT-CGAGAAAATGGGGCAAAGGAAAGATT 131 TCGATGCTTGTTTTATTTAAGGGATGAACTTTGATTTTAAG-GAAAATAGGGCAAAGAAAAGATT * * * 1479099 TCCAAGCAAAAGGAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATCA-TGCCTA 195 TCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAT-AGTGCCTA * * * * 1479163 ATCACAAAATGAATGAAG---ATTACTAGAATCCCAGTTTGACT-TATTTAAGGCACGAACTTAG 259 ATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCT-TTTGAGGCATGAACTTAG * * * * * * * 1479224 ACTTTAAAAAAATTGGTGGGAAGAAAGCCATTT-TTGTGACACTAAAACATTAATATCATGTATC 323 ACTTTACAAAAATTAGTGGGAAGAAAGCC-TTTCTTGCGAAACCAAAGCATTAATATCGTGTATC * * * * * 1479288 CTAATG-GAAAAACTATGTTTATGCTGCCTAATCCTGAAAAGAATAGGGCTTAGTATGAGTATTA 387 CTAATGAG-AAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTC * * 1479352 ATGTTTATCTAATTTAAGAGACAAAC 451 ATGTTTGTCTTATTTAAGAGACAAAC * * * ** * 1479378 TTTGATTCGATCAAAAACGATGGAAATACTAGCTTTTCTTACAACACCAAAGCATCAATGTCATT 1 TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACAACACCAAAGCATCAATGTCATG * * 1479443 TATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAAACTTGAATAGAATGGAGACTATTATGAGAA 66 TATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAA * * * 1479508 TCGATGCTTATTTTATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGTTTT 131 TCGATGCTTGTTTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT * ** * * 1479573 TCATGCAAAAGAAAATCATCACCATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGACTAAT 196 CCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT * * * * * * * 1479638 CACAAAATGAGTGAAGATCAATGCCAGAATTCAAGTTTGTCCCTTTTGAGGGATGAACTTAGACT 261 CACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCTTTTGAGGCATGAACTTAGACT * * * * * 1479703 TTACAAAAATTAGTGGGAAGAAAGCCTTTCATACGAAAGCAAAGCATTAATACCGTGTATCCTAC 326 TTACAAAAATTAGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATTAATATCGTGTATCCTAA * * * 1479768 CGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGTATAGGGATTAGTATGACTTTTCGA-GT 391 TGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTC-ATGT * 1479832 TTGTCTTATTTAAGATACAAAC 455 TTGTCTTATTTAAGAGACAAAC * * * 1479854 TTTG-TCTCTATAAAAAATGGTGGACAA-AAAAGCTTTTCTTACAACACCAAAGCATCATTGTCA 1 TTTGAT-TCTATCAAAAACGGTGGA-AAGAAAAGCTTTTCTTACAACACCAAAGCATCAATGTCA * ** * 1479917 TGTATCCTAATGAAGGGAATGTGTTTTTAG-TTCCCAATCTT-AAAATGAATAAAGACTGTTATG 64 TGTATCCTAATGAAGGGAATGTG-TTTTGGCTTCCCAATCTTGAAAA-GAATGGAGACTATTATG * * * * * 1479980 AG-A--GATGCTTGTCTAATTTAAGGGATAAACTTTCATTTTAAGCAAAATAGGGCAAAGAAAAG 127 AGAATCGATGCTTGTTTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG * ** 1480042 ATTTTCATGCAAAAGAAAATCATCAATATCATTTATTATAATGAGGAGAATGTGTTTATAGTGCC 192 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC ** * * ** 1480107 TAATCACAAAATGAATGAAGATCATTAGAAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTA 257 TAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCTTTTGAGGCATGAACTTA * * * * * 1480172 GACCTTACAAAAATT-GATGGGAAGAAAGCCTTTCTTGGGACACCAAAAC-TTCAATATCCTGTA 322 GACTTTACAAAAATTAG-TGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATT-AATATCGTGTA * * * * 1480235 TCTTATTGCGAAGAC------TA---TG-----T-CTGAAAAGAATAGGGATTAGTATGAGTATT 385 TCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATT 1480285 CATGTTTGT-TTAATTTAAGAGACAAAC 450 CATGTTTGTCTT-ATTTAAGAGACAAAC * 1480312 TTTGATTCTATCAAAAGCGGTGGAAAGAAAAGCTTTTCTTACAACACCAAAGCATCAATGTCATG 1 TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACAACACCAAAGCATCAATGTCATG * * * 1480377 TATCCTAATGAAGGAAATGTGTTTTGGCTTCCCAATCTTTAAAAGAATGGAGACTATTACGAGAA 66 TATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAA * * * * * * * 1480442 TCAATGCTTGCTTTACTTAATGGATGACCTTTGATTTTAGGGAAAAT-GCGGCAAAGAAAATATT 131 TCGATGCTTGTTTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAG-GGCAAAGAAAAGATT * * * ** 1480506 TCCAAGCAAAAGGAAATCATCAATATCATTTATCCTAATGAGGAAAAAATGTTTATAGTGCCTAA 195 TCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA * * * 1480571 TCACAAAATGAATAAAAATCATTACTAGAATCCACA-TTTGTCTCATTTGAGGCATGAACTTAGA 260 TCACAAAATGAATGAAGATCATTACTAGAATCCA-AGTTTGTCTCTTTTGAGGCATGAACTTAGA * * * * 1480635 CTTTCAAAAAAATTGGTGGGAAGAAAGCATTTCTTGCGAAACCATAGCA-TATATAT-GATGTAT 324 CTTT-ACAAAAATTAGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATTA-ATATCG-TGTAT * ** ** * ** * * 1480698 CCTAATGAGAAGACTATGTTTATAGTGCCTAATCGAGAAAAGAACGGGGATGAAAAAGAATATTC 386 CCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTC * * * 1480763 ATGATTGTCGTATTTAGGAGACAAAC 451 ATGTTTGTCTTATTTAAGAGACAAAC * * * * * 1480789 TTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCAACGCTAAAGCATCAATGTCAAG 1 TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACAACACCAAAGCATCAATGTCATG * * * ** * * * 1480854 TAT-CTTATGAATGGAATGTGTTTTGGCTTCCCAAACTTGAAACTAATGGAGACTGTAATGATAA 66 TATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAA * * * 1480918 TCGATGCTTGTTTTATTTGAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAATGAAAAGTTTT 131 TCGATGCTTGTTTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT * * * * 1480983 CCGTGCAAAAGAAAATCATCAATATCATTTATCCTATTGTGGAGAATTTGTTTATAGTGCCTAAT 196 CCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT * * * * ** 1481048 CACAAAAAGAATGAAGATCATTACGAGAATCCATGTTTGTCTTTTTTGAGAAATGAACTTAGACT 261 CACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCTTTTGAGGCATGAACTTAGACT * * * * * * * 1481113 TTACAAAAATTAATGGGAAAAAAGCCTTTCATGCGAAACCAAAGCTTTAATATCCTGTATACTAT 326 TTACAAAAATTAGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATTAATATCGTGTATCCTAA * * * * * 1481178 TAAGAAGACTATGTTTATGGCGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTTTTGAAGTT 391 TGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTT * 1481243 TGTCTTATTTAGGATG-CAAAC 456 TGTCTTATTTAAGA-GACAAAC * * * * * * 1481264 TTTGATTTTATCCAAAACGGTGGAAAGAAAAGCTTTTCTTACAGCACCAAAGCATCATTATCAAG 1 TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACAACACCAAAGCATCAATGTCATG * * ** ** 1481329 TATCCTAATGAAGGGAATGTGTTTTGGCTTCCTAATCTTGAAAAGAATGGAGATTGCTACAAGAA 66 TATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAA * * * * * * 1481394 TCAATGCTTGTTTTCTTTATGGGATGAACTTTGATATTATGGAAAATGGGGCAAAGAAAAGATTT 131 TCGATGCTTGTTTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT * * * 1481459 CCAAGCAAAAGGAAATCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTATAGTGCCTAAT 196 CCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT * * * * * 1481524 CACAAAATGAATGAAGATCATTACTAGAATCAAAGTTTGACTCATTTAAGGCACGAACTTAGACT 261 CACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCTTTTGAGGCATGAACTTAGACT * * * * ** * * 1481589 GTGCAAAAAATTGGTAGGAAGAAAGCCTTTCTTGC-AAAAGAAAGCATCAATATCATGTATCCTA 326 TTAC-AAAAATTAGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATTAATATCGTGTATCCTA * * * * * * * * 1481653 ATGGGAAGACTATGTCTATGGTGCCGAATCTTGAAAAAAATGGGGATTAGTTTGACTATTCAAGT 390 ATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGT * ** 1481718 TTGTCTTGTTTAAGAGACAATT 455 TTGTCTTATTTAAGAGACAAAC * * * ** * * 1481740 TTTGAATCTATCAAAAACGATGGGAAGACTAGCTTTTCTTGCGACACCAAAGCATCAATGTCATG 1 TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACAACACCAAAGCATCAATGTCATG * * * 1481805 TATCCTAATGAAGGAAATGTGTTTCTAG-TTCCCAATCTTGAAAAGAATGGAGA-TAGTTACGAG 66 TATCCTAATGAAGGGAATGTGTTT-TGGCTTCCCAATCTTGAAAAGAATGGAGACTA-TTATGAG * * * 1481868 AATCGATGCTTGTTTTATTTCAGGGATGAACTTTGATTTTAAGGAAAATATGGCAAATAAAAGAT 129 AATCGATGCTTGTTTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT * * * 1481933 TTCCATGCAAAAGATAATCATCAATATCATTTACCCTATTGAGGAGAATGTGTTTATAGTGCCTA 194 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA * * * * * ** * 1481998 ATCACAAAATGAATAAAGATTATTA-TGAGATTCCATGATTGTCTCTTTTTTGGCATGAACTTGG 259 ATCACAAAATGAATGAAGATCATTACT-AGAATCCAAGTTTGTCTCTTTTGAGGCATGAACTTAG * * * * 1482062 ACTTTACAAAAATTAGTGGAAAG-AAGACCTTTCATGTGAAACCAAAGCTTTAATATCGTGTATC 323 ACTTTACAAAAATTAGTGGGAAGAAAG-CCTTTCTTGCGAAACCAAAGCATTAATATCGTGTATC * * ** * 1482126 CTAATTAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATTGTTATTAGCATGACTATTCA 387 CTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCA * * * 1482191 TGTTTTTCTAATTTAAAAGACAAAC 452 TGTTTGTCTTATTTAAGAGACAAAC * * * ** * 1482216 TTAGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACGACATGAAAGCATCAATGTCTTG 1 TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACAACACCAAAGCATCAATGTCATG * * * 1482281 TATCCTAATGAAGGGAATGTGTTTGGGCTTCCCAATCTTTAAAAGAATGAAGAC---TAT--GAA 66 TATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAA * * * 1482341 TCGTTGCTTGTTTTATTTAAGGGATGAACTTTGATTTT-GGGAAAATGGGGCAAAGAAAAGATTT 131 TCGATGCTTGTTTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT * * * 1482405 CCAAGCAAAAGGAAATCATCAATATCATTTATCCTAGTGAGGAGAATGTGTTTATAGTGCCTAAT 196 CCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT * * 1482470 CACAAAATGGATGAAGATCATTACTAGAATCCACA-TTTGTCTCATTTGAGGCATGAACTTAGAC 261 CACAAAATGAATGAAGATCATTACTAGAATCCA-AGTTTGTCTCTTTTGAGGCATGAACTTAGAC * * * * 1482534 TTT-CAACAAATTGGTGGGGTAGAAAGCCTTTTTTGCGAAACCACAGCA-TATATAT-GATGTAT 325 TTTACAA-AAATTAGT-GGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATTA-ATATCG-TGTAT * * * * ** 1482596 CCTAATGAGAAGACTATGTTTATGGTGCCTTATCCAGAAAAGAA-CGTGGATTAGAATGGGTATT 386 CCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAG-GGATTAGTATGACTATT * * * 1482660 CATGTTTGTCATATTCAGGAGACAAAC 450 CATGTTTGTCTTATTTAAGAGACAAAC *** * 1482687 TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATAAATGTCATG 1 TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACAACACCAAAGCATCAATGTCATG * * * * 1482752 TATCCTAACGAAGGGAATGTGTTTTGGCTTCCTAAACATGAAAAGAATGGAGACTATTATGAGAA 66 TATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAA * * * * 1482817 TC-ATTGCTTGTCTTCTTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGTTT 131 TCGA-TGCTTGTTTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT * * * * * 1482881 TCCATGTAAAAGAAAATCATCAATATCATTTATCCTATTGAGAAGAATGTATTTATAGTGCCCAA 195 TCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA * * 1482946 TCACAAAATGAATGAAGATCATTA-TGAGAATCCATGTTTGTCTCTTTTGAGGGATGAACTTAGA 260 TCACAAAATGAATGAAGATCATTACT-AGAATCCAAGTTTGTCTCTTTTGAGGCATGAACTTAGA * * * * * * 1483010 CTTTACAAAAATTAGTGGGAAGAATGCCTTTCATGGGAAACCAAAGCCTTAATATCATTTATCCT 324 CTTTACAAAAATTAGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATTAATATCGTGTATCCT * * * ** * 1483075 AATGAGAAGACTGTGTTTATGGTGCCTAATCTTGAAAAGAATATGGATTAGTATCTCTATTCTTG 389 AATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATG * 1483140 TTTGTCTTATTTAAGATACAAAC 454 TTTGTCTTATTTAAGAGACAAAC * * * 1483163 TTTGATTCTATTAAAAACAGTGAAAAGAA 1 TTTGATTCTATCAAAAACGGTGGAAAGAA 1483192 TAGAGACTAT Statistics Matches: 3197, Mismatches: 533, Indels: 164 0.82 0.14 0.04 Matches are distributed among these distances: 457 10 0.00 458 150 0.05 459 7 0.00 460 1 0.00 461 165 0.05 462 56 0.02 463 1 0.00 464 2 0.00 467 2 0.00 468 2 0.00 469 3 0.00 470 147 0.05 471 250 0.08 472 55 0.02 473 412 0.13 474 7 0.00 475 207 0.06 476 1423 0.45 477 293 0.09 478 4 0.00 ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31 Consensus pattern (476 bp): TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACAACACCAAAGCATCAATGTCATG TATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAA TCGATGCTTGTTTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT CCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT CACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCTTTTGAGGCATGAACTTAGACT TTACAAAAATTAGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATTAATATCGTGTATCCTAA TGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTT TGTCTTATTTAAGAGACAAAC Found at i:1484471 original size:19 final size:19 Alignment explanation
Indices: 1484433--1484500 Score: 88 Period size: 19 Copynumber: 3.6 Consensus size: 19 1484423 GCCAATTTCT 1484433 TGTATCGATACAAT--ACA 1 TGTATCGATACAATGAACA 1484450 TGTATCGATACAATGAACA 1 TGTATCGATACAATGAACA * 1484469 TGTATCGATACAAAGCATA-A 1 TGTATCGATACAATG-A-ACA 1484489 TGTATCGATACA 1 TGTATCGATACA 1484501 TCTGGATATG Statistics Matches: 46, Mismatches: 1, Indels: 5 0.88 0.02 0.10 Matches are distributed among these distances: 17 14 0.30 19 17 0.37 20 14 0.30 21 1 0.02 ACGTcount: A:0.41, C:0.16, G:0.15, T:0.28 Consensus pattern (19 bp): TGTATCGATACAATGAACA Found at i:1518195 original size:21 final size:21 Alignment explanation
Indices: 1518166--1518210 Score: 56 Period size: 21 Copynumber: 2.1 Consensus size: 21 1518156 AAGTTTTTAT * 1518166 TTTTCTTAGCTAAC-TCATTA 1 TTTTCTTAGCCAACTTCATTA * 1518186 TTTTCATTAGCCAACTTCTTTA 1 TTTTC-TTAGCCAACTTCATTA 1518208 TTT 1 TTT 1518211 CAACTTGCAA Statistics Matches: 21, Mismatches: 2, Indels: 2 0.84 0.08 0.08 Matches are distributed among these distances: 20 5 0.24 21 8 0.38 22 8 0.38 ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53 Consensus pattern (21 bp): TTTTCTTAGCCAACTTCATTA Found at i:1520463 original size:13 final size:13 Alignment explanation
Indices: 1520445--1520470 Score: 52 Period size: 13 Copynumber: 2.0 Consensus size: 13 1520435 ATTTTTTTTG 1520445 TGTATCGATACAT 1 TGTATCGATACAT 1520458 TGTATCGATACAT 1 TGTATCGATACAT 1520471 ACTTTGTGTA Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 13 1.00 ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38 Consensus pattern (13 bp): TGTATCGATACAT Found at i:1521004 original size:31 final size:32 Alignment explanation
Indices: 1520937--1521036 Score: 130 Period size: 31 Copynumber: 3.1 Consensus size: 32 1520927 TTCAACGATT * 1520937 TGTATTGATACATAAAGTATTGTATCGATACAA 1 TGTATTGATACAT-AAGTATTGTATCGACACAA * 1520970 TGTATTGATACATAAGTGTTGTA-CGACACAA 1 TGTATTGATACATAAGTATTGTATCGACACAA * * * * 1521001 TGTATCGATACATAAGTTTTGTATCAATACAA 1 TGTATTGATACATAAGTATTGTATCGACACAA 1521033 TGTA 1 TGTA 1521037 AGCTACTGCC Statistics Matches: 60, Mismatches: 6, Indels: 3 0.87 0.09 0.04 Matches are distributed among these distances: 31 28 0.47 32 19 0.32 33 13 0.22 ACGTcount: A:0.37, C:0.11, G:0.16, T:0.36 Consensus pattern (32 bp): TGTATTGATACATAAGTATTGTATCGACACAA Found at i:1521091 original size:13 final size:13 Alignment explanation
Indices: 1521073--1521097 Score: 50 Period size: 13 Copynumber: 1.9 Consensus size: 13 1521063 ATTACTCAAA 1521073 TGTATCGATACAT 1 TGTATCGATACAT 1521086 TGTATCGATACA 1 TGTATCGATACA 1521098 CTGATCTTTG Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 12 1.00 ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36 Consensus pattern (13 bp): TGTATCGATACAT Found at i:1521148 original size:52 final size:52 Alignment explanation
Indices: 1521106--1521234 Score: 233 Period size: 52 Copynumber: 2.5 Consensus size: 52 1521096 CACTGATCTT 1521106 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA 1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA * 1521158 TGTATCTG-TACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA 1 TGTATC-GATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA 1521210 TGTATCGATACATGCAGGCAAATTT 1 TGTATCGATACATGCAGGCAAATTT 1521235 TCATATTTCA Statistics Matches: 74, Mismatches: 1, Indels: 4 0.94 0.01 0.05 Matches are distributed among these distances: 51 1 0.01 52 72 0.97 53 1 0.01 ACGTcount: A:0.34, C:0.19, G:0.19, T:0.29 Consensus pattern (52 bp): TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA Found at i:1528074 original size:10 final size:10 Alignment explanation
Indices: 1528061--1528100 Score: 55 Period size: 10 Copynumber: 4.0 Consensus size: 10 1528051 AAAAGTGATG 1528061 AAAAAAAAAC 1 AAAAAAAAAC 1528071 -AAAAAAAAC 1 AAAAAAAAAC 1528080 AAAAAAAAAC 1 AAAAAAAAAC * 1528090 ACAGAAAAAAC 1 A-AAAAAAAAC 1528101 GTGCAAAGGC Statistics Matches: 27, Mismatches: 1, Indels: 3 0.87 0.03 0.10 Matches are distributed among these distances: 9 9 0.33 10 10 0.37 11 8 0.30 ACGTcount: A:0.85, C:0.12, G:0.03, T:0.00 Consensus pattern (10 bp): AAAAAAAAAC Found at i:1528076 original size:9 final size:9 Alignment explanation
Indices: 1528062--1528087 Score: 52 Period size: 9 Copynumber: 2.9 Consensus size: 9 1528052 AAAGTGATGA 1528062 AAAAAAAAC 1 AAAAAAAAC 1528071 AAAAAAAAC 1 AAAAAAAAC 1528080 AAAAAAAA 1 AAAAAAAA 1528088 ACACAGAAAA Statistics Matches: 17, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 17 1.00 ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00 Consensus pattern (9 bp): AAAAAAAAC Found at i:1528085 original size:21 final size:21 Alignment explanation
Indices: 1528061--1528100 Score: 62 Period size: 21 Copynumber: 1.9 Consensus size: 21 1528051 AAAAGTGATG 1528061 AAAAAAAAACAAAAAAAACAA 1 AAAAAAAAACAAAAAAAACAA * * 1528082 AAAAAAACACAGAAAAAAC 1 AAAAAAAAACAAAAAAAAC 1528101 GTGCAAAGGC Statistics Matches: 17, Mismatches: 2, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 21 17 1.00 ACGTcount: A:0.85, C:0.12, G:0.03, T:0.00 Consensus pattern (21 bp): AAAAAAAAACAAAAAAAACAA Found at i:1528446 original size:15 final size:13 Alignment explanation
Indices: 1528422--1528461 Score: 55 Period size: 13 Copynumber: 3.1 Consensus size: 13 1528412 CCTAATCTTC 1528422 ACAAA-AAAAAAA 1 ACAAACAAAAAAA * 1528434 CAAAAACAAAAAAA 1 -ACAAACAAAAAAA 1528448 ACAAACAAAAAAA 1 ACAAACAAAAAAA 1528461 A 1 A 1528462 AGGAAGGAAA Statistics Matches: 24, Mismatches: 2, Indels: 2 0.86 0.07 0.07 Matches are distributed among these distances: 13 17 0.71 14 7 0.29 ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00 Consensus pattern (13 bp): ACAAACAAAAAAA Found at i:1528448 original size:19 final size:18 Alignment explanation
Indices: 1528424--1528462 Score: 60 Period size: 19 Copynumber: 2.1 Consensus size: 18 1528414 TAATCTTCAC 1528424 AAAAAAAAAACAAAAACAA 1 AAAAAAAAAACAAAAA-AA * 1528443 AAAAAACAAACAAAAAAA 1 AAAAAAAAAACAAAAAAA 1528461 AA 1 AA 1528463 GGAAGGAAAA Statistics Matches: 19, Mismatches: 1, Indels: 1 0.90 0.05 0.05 Matches are distributed among these distances: 18 4 0.21 19 15 0.79 ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00 Consensus pattern (18 bp): AAAAAAAAAACAAAAAAA Found at i:1529459 original size:31 final size:30 Alignment explanation
Indices: 1529421--1529728 Score: 350 Period size: 31 Copynumber: 9.9 Consensus size: 30 1529411 ATACCTTTTT * * 1529421 AAAGTCCATGACTCAGTGGCAATCTCTTCTC 1 AAAGTCCACGACTCAGTGGC-ATCTTTTCTC * * 1529452 AAAGTCCACGACTCAGTGGCAATCTCTGCTC 1 AAAGTCCACGACTCAGTGGC-ATCTTTTCTC * 1529483 AAAGTCCACAACTCAGTGGCATCCTTTTCTTC 1 AAAGTCCACGACTCAGTGGCAT-CTTTTC-TC * * * 1529515 AAAAGTCCATGACTCAGTGGCAATCTCTGCTC 1 -AAAGTCCACGACTCAGTGGC-ATCTTTTCTC 1529547 AAAGTCCACGACTCAGTGGCATCGTTTTCTTC 1 AAAGTCCACGACTCAGTGGCATC-TTTTC-TC * 1529579 AAAGTCCATGACTCAGTGGCAT-TTTGTCTC 1 AAAGTCCACGACTCAGTGGCATCTTT-TCTC * 1529609 AAAGTCCACGACTCAGTGGCATCCTTTTCTTT 1 AAAGTCCACGACTCAGTGGCAT-CTTTTC-TC 1529641 AAAGTCCACGACTCAGTGGCAT-TTTGTCTC 1 AAAGTCCACGACTCAGTGGCATCTTT-TCTC * 1529671 AAAGTCCACGACTCAGTGGCATTTTTTCTTC 1 AAAGTCCACGACTCAGTGGCATCTTTTC-TC * * * * 1529702 AAAGCCCACAACTCCGTGGCACCTTTT 1 AAAGTCCACGACTCAGTGGCATCTTTT 1529729 TCTTTTTAAA Statistics Matches: 243, Mismatches: 21, Indels: 26 0.84 0.07 0.09 Matches are distributed among these distances: 30 59 0.24 31 107 0.44 32 53 0.22 33 22 0.09 34 2 0.01 ACGTcount: A:0.24, C:0.29, G:0.17, T:0.30 Consensus pattern (30 bp): AAAGTCCACGACTCAGTGGCATCTTTTCTC Found at i:1529535 original size:64 final size:62 Alignment explanation
Indices: 1529421--1529722 Score: 398 Period size: 62 Copynumber: 4.9 Consensus size: 62 1529411 ATACCTTTTT * * 1529421 AAAGTCCATGACTCAGTGGCAAT-CTCTTC-TCAAAGTCCACGACTCAGTGGCAATCTCTG-CTC 1 AAAGTCCACGACTCAGTGGC-ATCCTTTTCTTCAAAGTCCACGACTCAGTGGC-AT-TCTGTCTC * * 1529483 AAAGTCCACAACTCAGTGGCATCCTTTTCTTCAAAAGTCCATGACTCAGTGGCAATCTCTG-CTC 1 AAAGTCCACGACTCAGTGGCATCCTTTTCTTC-AAAGTCCACGACTCAGTGGC-AT-TCTGTCTC * * * 1529547 AAAGTCCACGACTCAGTGGCATCGTTTTCTTCAAAGTCCATGACTCAGTGGCATTTTGTCTC 1 AAAGTCCACGACTCAGTGGCATCCTTTTCTTCAAAGTCCACGACTCAGTGGCATTCTGTCTC * * 1529609 AAAGTCCACGACTCAGTGGCATCCTTTTCTTTAAAGTCCACGACTCAGTGGCATTTTGTCTC 1 AAAGTCCACGACTCAGTGGCATCCTTTTCTTCAAAGTCCACGACTCAGTGGCATTCTGTCTC * * * * 1529671 AAAGTCCACGACTCAGTGGCAT-TTTTTCTTCAAAGCCCACAACTCCGTGGCA 1 AAAGTCCACGACTCAGTGGCATCCTTTTCTTCAAAGTCCACGACTCAGTGGCA 1529723 CCTTTTTCTT Statistics Matches: 221, Mismatches: 15, Indels: 9 0.90 0.06 0.04 Matches are distributed among these distances: 61 30 0.14 62 109 0.49 63 22 0.10 64 60 0.27 ACGTcount: A:0.25, C:0.29, G:0.18, T:0.29 Consensus pattern (62 bp): AAAGTCCACGACTCAGTGGCATCCTTTTCTTCAAAGTCCACGACTCAGTGGCATTCTGTCTC Found at i:1530156 original size:100 final size:98 Alignment explanation
Indices: 1529609--1530962 Score: 988 Period size: 100 Copynumber: 13.6 Consensus size: 98 1529599 ATTTTGTCTC * * * * * * 1529609 AAAGTCCACGACTCAGTGGCATCC-TTTT-CTTTAAAGTCCACGACTCAGTGGCA--TT-TTGTC 1 AAAGCCCACAACTCCGTGGCA-CCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCTT-T- * * * * 1529669 TCAAAGTCCACGACTCAGTGGCA--TTTTTTC-TTC 63 TCAAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT * * 1529702 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTCCTT 1 AAAGCCCACAACTCCGTGGCACCTTTTTCCTTTT-AAGTCCACAACTCCGTGGCACC--TT-CTT * * * 1529767 TTTAAAGCCCACAACTCCGTGGCACC---TTCCTTTC 62 TTCAAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT * 1529801 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTT 1 AAAGCCCACAACTCCGTGGCACCTTTTTC-CTTTTAAGTCCACAACTCCGTGGCACC---TTCTT * * * * * 1529866 TTTAAAGCCCACAACTCCGTGACACTTTTTTCTTTTT 62 TTCAAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT * * 1529903 AAAGCCCACAACTCCGTGGCACATTTTT-CTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTC 1 AAAGCCCACAACTCCGTGGCACCTTTTTCCTTTT--AAGTCCACAACTCCGTGGCAC-C---TT- * * * * 1529967 CCTTTT-AAAGTCCACGACCCCGTGGCACCTTGTTCCTTTC 59 -CTTTTCAAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT * * * 1530007 AAAGTCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGAACCTTCTTTTC 1 AAAGCCCACAACTCCGTGGCAC-CTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCTTTTC * 1530072 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT 65 AAAGTCCACAACTCCGTGGCAC-CTTTTT-CCTTTT * * * * * 1530108 AAAGTCCACAGCTCCATGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCTTTTCA 1 AAAGCCCACAACTCCGTGGCACCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCTTTTCA * * 1530173 AAGCCCACAACTCCGTGGCACTTTTTTTCCCTTTT 66 AAGTCCACAACTCCGTGGCAC-CTTTTT-CCTTTT * * * * * * * * * 1530208 AAAGTCCACGACCCCATGGCACCTTGTTCCTTTCAAAGTTCGCAACTCCGTGGCACTCTTTTTCC 1 AAAGCCCACAACTCCGTGGCACCTTTTTCCTTT-TAAGTCCACAACTCCGTGGCAC-CTTCTT-- * 1530273 TTCTAAGTCCACAACTCCGTGGCACC---TT-CTTTT 62 TTCAAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT * * * * 1530306 CAAAGCTCACAACTCCGTGGCACTTTTTTTCCCTTTTAAAGTCCACAACTCCATGGCACCTTGTT 1 -AAAGCCCACAACTCCGTGGCAC-CTTTTT-CCTTTT-AAGTCCACAACTCCGTGGCACCTTCTT ** * * 1530371 CCTTTTAAGTCCACGACTTCGTGGCACC---TT-CTTTT 62 --TTCAAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT * 1530406 CAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGTCCACAACTCCGTGGCACCTTGTT 1 -AAAGCCCACAACTCCGTGGCAC-CTTTTT-CCTTTT-AAGTCCACAACTCCGTGGCACCTTCTT ** * 1530471 CCTTTTAAGTCCACGACTCCGTGGCACC---TT-CTTTT 62 --TTCAAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT * * * 1530506 CAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTAAAGTCCACGACCCCGTGGCACCTTGTT 1 -AAAGCCCACAACTCCGTGGCAC-CTTTTT-CCTTTT-AAGTCCACAACTCCGTGGCACC---TT * * * 1530571 CCTTTCAAAGTCCACAACTCCCTGGCACTCTTTTTCCTTCT 59 CTTTTCAAAGTCCACAACTCCGTGGCAC-CTTTTTCCTTTT * * * * 1530612 -AAGTCCATAACTCCGTGGCA-C--TTT-CTTTTCAAAG-CAAACAACTCCGTGGCA-CTTTTTT 1 AAAGCCCACAACTCCGTGGCACCTTTTTCCTTTT--AAGTC-CACAACTCCGTGGCACCTTCTTT * * 1530670 TCCCTTTTAAAGTCCACAACTCCGTGGCACCATGTTCCTTTT 63 T--C----AAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT * * * ** * * 1530712 -AAGTCCACGACTCCGTGGCACCTTCTT--TTCAAAGCCCACAACTCTGTGGCACTCTTTTTCCC 1 AAAGCCCACAACTCCGTGGCACCTTTTTCCTTTTAAGTCCACAACTCCGTGGCAC-C---TT--C * * 1530774 TTTT-AAAGTCCACAACCCCGTGGCACCTTGTTCCTTTT 60 TTTTCAAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT * * * * * * * 1530812 -AAGTCCACGACTCCGTGGCACC---ATCCTTTCAAAGTCCGCGACTCTGTGGCACCTTCTTTTC 1 AAAGCCCACAACTCCGTGGCACCTTTTTCCTTT-TAAGTCCACAACTCCGTGGCACCTTCTTTTC * * * 1530873 AAAGCCCACAACTCTGTGGCGCTCTTTTTCCCTTTT 65 AAAGTCCACAACTCCGTGGCAC-CTTTTT-CCTTTT * * * 1530909 AAAGCCCACAACTCCGTGGCACCTTGTTCTTTTTAAGTCCACAACTTCGTGGCA 1 AAAGCCCACAACTCCGTGGCACCTTTTTCCTTTTAAGTCCACAACTCCGTGGCA 1530963 TCTTTCACCC Statistics Matches: 1062, Mismatches: 127, Indels: 137 0.80 0.10 0.10 Matches are distributed among these distances: 92 2 0.00 93 22 0.02 94 8 0.01 95 40 0.04 96 7 0.01 97 8 0.01 98 40 0.04 99 156 0.15 100 455 0.43 101 117 0.11 102 63 0.06 103 12 0.01 104 106 0.10 105 14 0.01 106 8 0.01 107 4 0.00 ACGTcount: A:0.20, C:0.34, G:0.14, T:0.33 Consensus pattern (98 bp): AAAGCCCACAACTCCGTGGCACCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCTTTTCA AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT Found at i:1530217 original size:235 final size:231 Alignment explanation
Indices: 1529672--1530967 Score: 1521 Period size: 235 Copynumber: 5.5 Consensus size: 231 1529662 TTTTGTCTCA * * * * 1529672 AAGTCCACGACTCAGTGGCA-TTTTTTCTTCAAAGCCCACAACTCCGTGGCAC-CTTTTT-CTTT 1 AAGTCCACGACTCCGTGGCACCTTCTT-TTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTT * * 1529734 TTAAAGCCCACAACTCCGTGGCACCTT-TTCCTTTTTAAAGCCCACAACTCCGTGGCACC---TT 65 TTAAAGTCCACAACTCCGTGGCACCTTGTTCC--TTTAAAGTCCACAACTCCGTGGCACCTTTTT * 1529795 CCTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTTAAGTCCACAACTCCGTGGCACCTT 128 CC-TTCAAAGCCCACAACTCCGTGGCACC--TTTC-TTTTAAAGTCCACAACTCCGTGGCACCTT * * * * * * * 1529860 TTTCTTTTTAAAGCCCACAACTCCGTGACACTTTTTTCTTTTT 189 TTTCCTTTTAAAGTCCACAACTCCATGGCACCTTGTTCCTTTT * * * 1529903 AAAGCCCACAACTCCGTGGCACATTTTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCC 1 -AAGTCCACGACTCCGTGGCAC---CTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCC * * 1529968 CTTTTAAAGTCCACGACCCCGTGGCACCTTGTTCCTTTCAAAGTCCACAACTCCGTGGCACTCTT 62 CTTTTAAAGTCCACAACTCCGTGGCACCTTGTTCCTTT-AAAGTCCACAACTCCGTGGCAC-CTT * * * * 1530033 TTTCCTTCTAAGTCCACAACTCCGTGGAACC-TTCTTTTCAAAGCCCACAACTCCGTGGCACTCT 125 TTTCCTTCAAAGCCCACAACTCCGTGGCACCTTTCTTTT-AAAGTCCACAACTCCGTGGCAC-CT * 1530097 TTTTCCCTTTTAAAGTCCACAGCTCCATGGCACCTTGTTCCTTTT 188 TTTT-CCTTTTAAAGTCCACAACTCCATGGCACCTTGTTCCTTTT * 1530142 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTTTTTTTCCCTTT 1 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT * * * * * 1530207 TAAAGTCCACGACCCCATGGCACCTTGTTCCTTTCAAAGTTCGCAACTCCGTGGCACTCTTTTTC 66 TAAAGTCCACAACTCCGTGGCACCTTGTTCCTTT-AAAGTCCACAACTCCGTGGCAC-CTTTTTC * * * 1530272 CTTCTAAGTCCACAACTCCGTGGCACC-TTCTTTTCAAAG-CTCACAACTCCGTGGCACTTTTTT 129 CTTCAAAGCCCACAACTCCGTGGCACCTTTCTTTT-AAAGTC-CACAACTCCGTGGCAC-CTTTT 1530335 TCCCTTTTAAAGTCCACAACTCCATGGCACCTTGTTCCTTTT 191 T-CCTTTTAAAGTCCACAACTCCATGGCACCTTGTTCCTTTT * 1530377 AAGTCCACGACTTCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT 1 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT * * * 1530442 TAAAGTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCTT--T 66 TAAAGTCCACAACTCCGTGGCACCTTGTTCCTTTAAAGTCCACAACTCCGTGGCACCTTTTTCCT * * * * 1530505 TCAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTAAAGTCCACGACCCCGTGGCACCTTGT 131 TCAAAGCCCACAACTCCGTGGCAC-C--TTT--CTTTTAAAGTCCACAACTCCGTGGCACCTTTT * * * * 1530570 TCCTTTCAAAGTCCACAACTCCCTGGCACTCTTTTTCCTTCT 191 TCCTTTTAAAGTCCACAACTCCATGGCAC-CTTGTTCCTTTT ** * ** * 1530612 AAGTCCATAACTCCGTGGCACTTTCTTTTCAAAGCAAACAACTCCGTGGCACTTTTTTTCCCTTT 1 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT * * * * 1530677 TAAAGTCCACAACTCCGTGGCACCATGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCTT--T 66 TAAAGTCCACAACTCCGTGGCACCTTGTTCCTTTAAAGTCCACAACTCCGTGGCACCTTTTTCCT * * * 1530740 TCAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTAAAGTCCACAACCCCGTGGCACCTTGT 131 TCAAAGCCCACAACTCCGTGGCAC-C--TTT--CTTTTAAAGTCCACAACTCCGTGGCACCTTTT * * * * 1530805 TCCTTTT-AAGTCCACGACTCCGTGGCACC---ATCCTTTCA 191 TCCTTTTAAAGTCCACAACTCCATGGCACCTTGTTCCTTT-T * * * * 1530843 AAGTCCGCGACTCTGTGGCACCTTCTTTTCAAAGCCCACAACTCTGTGGCGCTCTTTTTCCCTTT 1 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT * * * * * 1530908 TAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTTAAGTCCACAACTTCGTGGCATCTTT 66 TAAAGTCCACAACTCCGTGGCACCTTGTTCCTTTAAAGTCCACAACTCCGTGGCACCTTT 1530968 CACCCTTTTT Statistics Matches: 954, Mismatches: 85, Indels: 51 0.88 0.08 0.05 Matches are distributed among these distances: 230 5 0.01 231 130 0.14 232 18 0.02 233 6 0.01 234 64 0.07 235 529 0.55 236 36 0.04 237 77 0.08 238 30 0.03 239 32 0.03 240 23 0.02 241 4 0.00 ACGTcount: A:0.20, C:0.34, G:0.13, T:0.33 Consensus pattern (231 bp): AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT TAAAGTCCACAACTCCGTGGCACCTTGTTCCTTTAAAGTCCACAACTCCGTGGCACCTTTTTCCT TCAAAGCCCACAACTCCGTGGCACCTTTCTTTTAAAGTCCACAACTCCGTGGCACCTTTTTCCTT TTAAAGTCCACAACTCCATGGCACCTTGTTCCTTTT Found at i:1530425 original size:335 final size:335 Alignment explanation
Indices: 1529707--1530962 Score: 1596 Period size: 335 Copynumber: 3.7 Consensus size: 335 1529697 TCTTCAAAGC * * * 1529707 CCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCAC-C-TTTTCCTTTTT 1 CCACGACTCCGTGGCACC---TTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT * * * * 1529770 AAAGCCCACAACTCCGTGGCACC---TTCCTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTT 63 AAAGTCCACAACTCCGTGGCACCTTGTTCCTTT-TAAGTCCACGACTCCGTGGCACC---TTCTT ** * * * * * * * * 1529832 TTTTAAGTCCACAACTCCGTGGCAC-CTTTTT-CTTTTTAAAGCCCACAACTCCGTGACACTTTT 124 TTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGTCCACGACCCCGTGGCACCTTG * * * * * * * 1529895 TTCTTTTTAAAGCCCACAACTCCGTGGCAC-ATTTTTCTTTTCAAAGCCCACAACTCCGTGGCAC 189 TTCCTTTCAAAGTCCACAACTCCGTGGCACTCTTTTTC-CTTCTAAGTCCACAACTCCGTGGCAC * * * * * 1529959 TCTTTTTCCCTTTT-AAAG-TCCACGACCCCGTGGCAC-CTTGTT-CCTTTCAAAGTCCACAACT 253 -C---TT--CTTTTCAAAGCT-CACAACTCCGTGGCACTTTTTTTCCCTTTTAAAGTCCACAACT * * 1530020 CCGTGGCACTCTTTTTCCTTCTAAGT 311 CCGTGGCAC-CTTGTTCCTTTTAAGT * * 1530046 CCACAACTCCGTGGAACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAA 1 CCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAA * * 1530111 GTCCACAGCTCCATGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCTTTTCAAAG 66 GTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCTTTTCAAAG * * 1530176 CCCACAACTCCGTGGCACTTTTTTTCCCTTTTAAAGTCCACGACCCCATGGCACCTTGTTCCTTT 131 CCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGTCCACGACCCCGTGGCACCTTGTTCCTTT * * 1530241 CAAAGTTCGCAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCTTCTTTT 196 CAAAGTCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCTTCTTTT * 1530306 CAAAGCTCACAACTCCGTGGCACTTTTTTTCCCTTTTAAAGTCCACAACTCCATGGCACCTTGTT 261 CAAAGCTCACAACTCCGTGGCACTTTTTTTCCCTTTTAAAGTCCACAACTCCGTGGCACCTTGTT 1530371 CCTTTTAAGT 326 CCTTTTAAGT * 1530381 CCACGACTTCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAA 1 CCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAA 1530446 GTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCTTTTCAAAG 66 GTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCTTTTCAAAG * 1530511 CCCACAACTCTGTGGCACTCTTTTTCCCTTTTAAAGTCCACGACCCCGTGGCACCTTGTTCCTTT 131 CCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGTCCACGACCCCGTGGCACCTTGTTCCTTT * * * 1530576 CAAAGTCCACAACTCCCTGGCACTCTTTTTCCTTCTAAGTCCATAACTCCGTGGCACTTTCTTTT 196 CAAAGTCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCTTCTTTT ** * 1530641 CAAAGCAAACAACTCCGTGGCACTTTTTTTCCCTTTTAAAGTCCACAACTCCGTGGCACCATGTT 261 CAAAGCTCACAACTCCGTGGCACTTTTTTTCCCTTTTAAAGTCCACAACTCCGTGGCACCTTGTT 1530706 CCTTTTAAGT 326 CCTTTTAAGT * 1530716 CCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTAAA 1 CCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAA * * * 1530781 GTCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCATCCTTTCAAAG 66 GTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCTTTTCAAAG * * * * * * * * * * 1530846 TCCGCGACTCTGTGGCAC-C---TT--CTTTTCAAAGCCCACAACTCTGTGGCGCTCTTTTTCCC 131 CCCACAACTCCGTGGCACTCTTTTTCCCTTTT-AAAGTCCACGACCCCGTGGCAC-CTTGTT-CC * * * * * * 1530905 TTTTAAAGCCCACAACTCCGTGGCAC-CTTGTTCTTTTTAAGTCCACAACTTCGTGGCA 193 TTTCAAAGTCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCA 1530963 TCTTTCACCC Statistics Matches: 825, Mismatches: 77, Indels: 38 0.88 0.08 0.04 Matches are distributed among these distances: 329 5 0.01 330 17 0.02 331 34 0.04 332 25 0.03 333 5 0.01 334 19 0.02 335 479 0.58 336 55 0.07 337 28 0.03 338 36 0.04 339 89 0.11 340 26 0.03 341 7 0.01 ACGTcount: A:0.20, C:0.34, G:0.13, T:0.33 Consensus pattern (335 bp): CCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAA GTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCTTTTCAAAG CCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGTCCACGACCCCGTGGCACCTTGTTCCTTT CAAAGTCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCTTCTTTT CAAAGCTCACAACTCCGTGGCACTTTTTTTCCCTTTTAAAGTCCACAACTCCGTGGCACCTTGTT CCTTTTAAGT Found at i:1531019 original size:33 final size:32 Alignment explanation
Indices: 1530977--1531530 Score: 795 Period size: 33 Copynumber: 17.3 Consensus size: 32 1530967 TCACCCTTTT 1530977 TAAAGCCCACACAAGTCGGTGGCAAACCTTCTC 1 TAAAGCCCACACAAGTCGGTGGC-AACCTTCTC * 1531010 TAAAGCCCACAGAAGTCGGTGGCAAACCTTCTC 1 TAAAGCCCACACAAGTCGGTGGC-AACCTTCTC * * 1531043 TAAAGCCCACACAGGTTGGTGGCAAACCTTCTC 1 TAAAGCCCACACAAGTCGGTGGC-AACCTTCTC 1531076 TAAAGCCCACACAAGTCGGTGGCAAACCTTCTC 1 TAAAGCCCACACAAGTCGGTGGC-AACCTTCTC * 1531109 TAAAGCCCGCACAAGTCGGTGGCAACCTTCTTC 1 TAAAGCCCACACAAGTCGGTGGCAACCTTC-TC * * 1531142 TAAAGCCTACACATGTCGGTGGCAACC-T-TC 1 TAAAGCCCACACAAGTCGGTGGCAACCTTCTC 1531172 TAAAGCCCACACAAGTCGGTGGCAACCCTTCTC 1 TAAAGCCCACACAAGTCGGTGGCAA-CCTTCTC * 1531205 TAAAGCCCACACAAGTCGGTGCCAACC-T-TC 1 TAAAGCCCACACAAGTCGGTGGCAACCTTCTC 1531235 TAAAGCCCACACAAGTCGGTGGCAACCCTTCTC 1 TAAAGCCCACACAAGTCGGTGGCAA-CCTTCTC 1531268 TAAAGCCCACACAAGTCGGTGGCAACC-T-TC 1 TAAAGCCCACACAAGTCGGTGGCAACCTTCTC 1531298 TAAAGCCCACACAAGTCGGTGGCAACCCTTCTC 1 TAAAGCCCACACAAGTCGGTGGCAA-CCTTCTC * 1531331 -AAAGCCCACACAAGTCGGTGGCAACCCTCTC 1 TAAAGCCCACACAAGTCGGTGGCAACCTTCTC * 1531362 TAAAGCCCACACAAGTCGGTGGCAACCTT-TT 1 TAAAGCCCACACAAGTCGGTGGCAACCTTCTC 1531393 TCAAAGCCCACACAAGTCGGTGGCAACCTTCTTC 1 T-AAAGCCCACACAAGTCGGTGGCAACCTTC-TC * * 1531427 TAAAGCCTACACAAGTCGGTGGCAACCCTCTC 1 TAAAGCCCACACAAGTCGGTGGCAACCTTCTC * * * 1531459 TAAAGCCCACACAATTTGGTGACAACCATTCTC 1 TAAAGCCCACACAAGTCGGTGGCAACC-TTCTC * * 1531492 TAAAGCCCACACAAGTCAGTGGCAACCCT-TC 1 TAAAGCCCACACAAGTCGGTGGCAACCTTCTC 1531523 T-AAGCCCA 1 TAAAGCCCA 1531531 ATATAGCTGG Statistics Matches: 476, Mismatches: 30, Indels: 33 0.88 0.06 0.06 Matches are distributed among these distances: 30 85 0.18 31 19 0.04 32 120 0.25 33 250 0.53 34 2 0.00 ACGTcount: A:0.29, C:0.34, G:0.18, T:0.19 Consensus pattern (32 bp): TAAAGCCCACACAAGTCGGTGGCAACCTTCTC Found at i:1531207 original size:63 final size:64 Alignment explanation
Indices: 1530977--1531523 Score: 811 Period size: 63 Copynumber: 8.5 Consensus size: 64 1530967 TCACCCTTTT * * 1530977 TAAAGCCCACACAAGTCGGTGGCAAACCTTCTCTAAAGCCCACAGAAGTCGGTGGCAAACCTTCT 1 TAAAGCCCACACAAGTCGGTGGCAACCCTTCTCTAAAGCCCACACAAGTCGGTGGC-AACC-TCT 1531042 C 64 C * * * 1531043 TAAAGCCCACACAGGTTGGTGGCAAACCTTCTCTAAAGCCCACACAAGTCGGTGGCAAACCTTCT 1 TAAAGCCCACACAAGTCGGTGGCAACCCTTCTCTAAAGCCCACACAAGTCGGTGGC-AACC-TCT 1531108 C 64 C * * * 1531109 TAAAGCCCGCACAAGTCGGTGGCAA-CCTTCTTCTAAAGCCTACACATGTCGGTGGCAACCT-TC 1 TAAAGCCCACACAAGTCGGTGGCAACCCTTC-TCTAAAGCCCACACAAGTCGGTGGCAACCTCTC * 1531172 TAAAGCCCACACAAGTCGGTGGCAACCCTTCTCTAAAGCCCACACAAGTCGGTGCCAACCT-TC 1 TAAAGCCCACACAAGTCGGTGGCAACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAACCTCTC 1531235 TAAAGCCCACACAAGTCGGTGGCAACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAACCT-TC 1 TAAAGCCCACACAAGTCGGTGGCAACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAACCTCTC 1531298 TAAAGCCCACACAAGTCGGTGGCAACCCTTCTC-AAAGCCCACACAAGTCGGTGGCAACCCTCTC 1 TAAAGCCCACACAAGTCGGTGGCAACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAA-CCTCTC * * 1531362 TAAAGCCCACACAAGTCGGTGGCAACCTTTTTC-AAAGCCCACACAAGTCGGTGGCAACCTTCTT 1 TAAAGCCCACACAAGTCGGTGGCAACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAACC-TC-T 1531426 C 64 C * * * * 1531427 TAAAGCCTACACAAGTCGGTGGCAACCC-TCTCTAAAGCCCACACAATTTGGTGACAACCATTCT 1 TAAAGCCCACACAAGTCGGTGGCAACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAACC--TCT 1531491 C 64 C * 1531492 TAAAGCCCACACAAGTCAGTGGCAACCCTTCT 1 TAAAGCCCACACAAGTCGGTGGCAACCCTTCT 1531524 AAGCCCAATA Statistics Matches: 449, Mismatches: 23, Indels: 18 0.92 0.05 0.04 Matches are distributed among these distances: 62 24 0.05 63 155 0.35 64 68 0.15 65 88 0.20 66 114 0.25 ACGTcount: A:0.29, C:0.34, G:0.18, T:0.19 Consensus pattern (64 bp): TAAAGCCCACACAAGTCGGTGGCAACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAACCTCTC Done.