Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold274
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1642345
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 31972 characters in sequence are not A, C, G, or T
File 9 of 10
Found at i:1280241 original size:158 final size:160
Alignment explanation
Indices: 1280079--1284526 Score: 703
Period size: 159 Copynumber: 28.1 Consensus size: 160
1280069 AAAAACATAG
* *
1280079 TCTTCTCGTTAGGATACATCATATTGATACTTTGGCTTCGCAAGAAAGGCTTTT-TTTGACCAAT
1 TCTTCTCATTAGGATACATCATATTGATACTTTGGCTTCGCAAGAAAAGCTTTTCTTTGACCAAT
* * * * ** *
1280143 TTTTGTAAAGTCTAAGTTTGTGTCTCAAATGAGACAAACATGGATTCTTGTTATGATCTTCATTC
66 TTTTGTAAAATCTAAGTTCGTTTCTCAAATAAGACAAACATGGATTCTTCATATGATCTCCATTC
1280208 ATTTT-GTGATTAGGCA-CAAAAACACATTC
131 -TTTTCGTGATTAGGCACCAAAAACACATTC
* * * * * *** * *
1280237 TC-T-TCATTAGGATAAATGATATTGTTGA-TTT-TCTTTTGCCTCAAAATCTTTTCTCTG-CCT
1 TCTTCTCATTAGGATACATCATATTGAT-ACTTTGGC-TTCGCAAGAAAAGCTTTTCTTTGACC-
* * * ** * * * * ** *
1280297 TATTTTCAT-TAAAATCAAAGTTCATCCCTTAAAAAAGACAAGCATCGATT-TTCATAACAGTGT
63 AATTTT--TGTAAAATCTAAGTTCGTTTCTCAAATAAGACAAACATGGATTCTTCATATGA-TCT
** * * * *
1280360 CCATTCTTTTCAAGATTGGGAAGCTAAAACACATT-
125 CCATTCTTTTCGTGATTAGGCACCAAAAACACATTC
* * * * * * * **
1280395 TCCT-TCAGTAGGATACATGACATTGATGCTTTGG-TGTCACAAAAAAAGCTTTTCCTTCCACC-
1 TCTTCTCATTAGGATACATCATATTGATACTTTGGCT-TCGCAAGAAAAGCTTTT-CTTTGACCA
* * * * * * *
1280457 GTTTTTG-ACAGAATC-AAGGTTTGTTTCTTAAGTAAGACAAACATGAATAC-TCATACTAATC-
64 ATTTTTGTA-A-AATCTAA-GTTCGTTTCTCAAATAAGACAAACATGGATTCTTCATA-TGATCT
* * * * *
1280518 CCACTCTTTTCAG-GATTAGACACCATAAACATAGTC
125 CCATTCTTTTC-GTGATTAGGCACCAAAAACACATTC
*
1280554 -C-TCTCATTAGGATACATCATATTGATACTTTGGCTTCGCAAGAAAGGCTTTT-TTTGACCAAT
1 TCTTCTCATTAGGATACATCATATTGATACTTTGGCTTCGCAAGAAAAGCTTTTCTTTGACCAAT
* * ** *
1280616 TTTTGTAAAGTCTAAGTTCGTTTCTCAAATGAGACAAACATGGATTCTTGTTATGATCTTCATTC
66 TTTTGTAAAATCTAAGTTCGTTTCTCAAATAAGACAAACATGGATTCTTCATATGATCTCCATTC
1280681 ATTTT-GTGATTAGGCA-CAAAAACACATTC
131 -TTTTCGTGATTAGGCACCAAAAACACATTC
* * * * * ** * *
1280710 TC-T-TCATTAGGATAAATGATATTGCTGA-TTT-TCTTTTGCCTCG-AAATCTTTTCTCTG-CC
1 TCTTCTCATTAGGATACATCATATTGAT-ACTTTGGC-TTCG-CAAGAAAAGCTTTTCTTTGACC
* * * ** * * * * ** *
1280769 TTATTTTCAT-TAAAATCAAAGTTCATCCCTTAAAAAAGACAAGCATCGATT-TTCATAACAGTG
63 -AATTTT--TGTAAAATCTAAGTTCGTTTCTCAAATAAGACAAACATGGATTCTTCATATGA-TC
** * * * *
1280832 TCCATTCTTTTCAAGATTGGGAAGCTAAAACACATT-
124 TCCATTCTTTTCGTGATTAGGCACCAAAAACACATTC
* * * * * * **
1280868 TCCT-TCAGTAGGATACATGACATTGATGCTTTGG-TGTCGCAAAAAAAGCTTTTCCTTCCACC-
1 TCTTCTCATTAGGATACATCATATTGATACTTTGGCT-TCGCAAGAAAAGCTTTT-CTTTGACCA
* * * * * * *
1280930 GTTTTTG-ACAGAATC-AAGGTTTGTTTCTTAAGTAAGACAAACATGAATAC-TCATACTAATC-
64 ATTTTTGTA-A-AATCTAA-GTTCGTTTCTCAAATAAGACAAACATGGATTCTTCATA-TGATCT
* * * * *
1280991 CCACTCTTTTCAG-GATTAGACACCATAAACATAGTC
125 CCATTCTTTTC-GTGATTAGGCACCAAAAACACATTC
** * * *
1281027 -C-TCTCATTAGGATACATCATATTGATACTTTGGCTTCGCAAGAATGGCTTTTTTTTTACCAAA
1 TCTTCTCATTAGGATACATCATATTGATACTTTGGCTTCGCAAGAAAAGCTTTTCTTTGACCAAT
* * * ** * * *
1281090 TTTAGTGAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTT-GTAATGATCTTCATT
66 TTTTGTAAAATCTAAGTTCGTTTCTCAAATAAGACAAACATGGATTCTTCAT-ATGATCTCCATT
*
1281154 CATTTT-GTGATTAGGC-GCAATAAACACATTC
130 C-TTTTCGTGATTAGGCACCAA-AAACACATTC
* * * ** * * * * * *
1281185 TC--CTCAATAGGATAAATGATATTGATGGTTT-TCTTTTGCATTG-AAATCTTTTCTTTGCCCT
1 TCTTCTCATTAGGATACATCATATTGATACTTTGGC-TTCGCA-AGAAAAGCTTTTCTTTGACCA
* * * * * * **
1281246 ATTTTCCT-TAAAATCAAAATTC--TTCCCATAAAAAAGACAAGCATCGATTC-TCATAACAGTC
64 ATTTT--TGTAAAATCTAAGTTCGTTTCTC--AAATAAGACAAACATGGATTCTTCATATGA-TC
* * * *
1281307 TCCAATCTTTTC-TAGATTGGGAAGCCAAAAACATATTC
124 TCCATTCTTTTCGT-GATTAGGCA-CCAAAAACACATTC
* ** * * *
1281345 -CCT-TCATTAGGATACA-CGACCTTGACACTTTGG-TGTTGCAAGAAAAGCTTTTCTTTCCACC
1 TCTTCTCATTAGGATACATC-ATATTGATACTTTGGCT-TCGCAAGAAAAGCTTTTCTTT-GACC
* * * * * * *
1281406 -GTTTTTGATAGAATCAAAGTTTGTTTCAT-AAATAAGACAAACATGAATAC-TCATACTAATCT
63 AATTTTTG-TAAAATCTAAGTTCGTTTC-TCAAATAAGACAAACATGGATTCTTCATA-TGATCT
* * **
1281468 CCATTCTTTTCAG-GATTAGACACC-ATAA-ACATAG
125 CCATTCTTTTC-GTGATTAGGCACCAAAAACACATTC
* * *
1281502 TCTTCTCATTAGGATACGTCATATTGATACTTTGGCTTCGCAAG-AAGGCTTTTCTTCT-ACCGA
1 TCTTCTCATTAGGATACATCATATTGATACTTTGGCTTCGCAAGAAAAGCTTTTCTT-TGACCAA
* ** ** * ** *
1281565 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAGACATGGATTCTTGTTATGATCTTCATT
65 TTTTTGTAAAATCTAAGTTCGTTTCTCAAATAAGACAAACATGGATTCTTCATATGATCTCCATT
* * *
1281630 CATTTT-GTGATTAAGCACTATAAACA-ATT-
130 C-TTTTCGTGATTAGGCACCAAAAACACATTC
* * * * * * * * *
1281659 TCTCCTCATTAAGATAAATGATATTGATGA-TTT-TCTTTTGCATTG-AAATCTTTTCTTTGCCC
1 TCTTCTCATTAGGATACATCATATTGAT-ACTTTGGC-TTCGCA-AGAAAAGCTTTTCTTTGACC
* ** * * * ** * ** * * * ** *
1281721 TATTTTCCTAAAAATCAAAGCTCATCGCTTAAATAAGACAAGGATCGATTC-CCGTAACAGTTTC
63 AATTTTTGT-AAAATCTAAGTTCGTTTCTCAAATAAGACAAACATGGATTCTTCATATGA-TCTC
*** * * *
1281785 CATTCTTTTAAAGATTAGGAACCCAAAATACATTC
126 CATTCTTTTCGTGATTAGGCACCAAAAACACATTC
* * * * **** *
1281820 T-TT-TCATTAGGATACATGACATTGATGCTTTGG-TGTCACAAGAAAAGCTTTTCTGCCCTCCG
1 TCTTCTCATTAGGATACATCATATTGATACTTTGGCT-TCGCAAGAAAAGCTTTTCT-TTGACCA
* * * * * * * * * * * *
1281882 TTTTTTATAGAATCAAAGTTTGTTTCTTAAA-AAAACAAATATGAATAC-TCATACTAATCCCCA
64 ATTTTTGTAAAATCTAAGTTCGTTTCTCAAATAAGACAAACATGGATTCTTCATA-TGATCTCCA
* * * * *
1281945 TTCTTTTTAG-GATTAGGCACTATAAACATAAT-
128 TTC-TTTTCGTGATTAGGCACCAAAAACACATTC
* * * * * ***
1281977 T-TTCTCCTTAGGATACATAATATTGATACTTTGGTTTCGCGAGAAAGGCTTTT-TTCCCTCCAA
1 TCTTCTCATTAGGATACATCATATTGATACTTTGGCTTCGCAAGAAAAGCTTTTCTT-TGACCAA
* * ** * *
1282040 TTTTTGTAAAGTCTACG-TCTGTGCCTCAAA-AATGAGATGAACATGAATTC-T-AGTAATGATC
65 TTTTTGTAAAATCTAAGTTC-GTTTCTCAAATAA-GACA--AACATGGATTCTTCA-T-ATGATC
* * * * *
1282101 TTCATTCATTTT-GTGGTTAGGCACTACAAATACATTC
124 TCCATTC-TTTTCGTGATTAGGCACCAAAAACACATTC
* * * * * * * * * ** * *
1282138 TC--CTCATTAGGATAAATTATATTGTTAATTT-TCTTAAGCATGGATATATTTTCTTTGCCCTA
1 TCTTCTCATTAGGATACATCATATTGATACTTTGGCTT-CGCAAGAAAAGCTTTTCTTTGACCAA
* * ** * * * *
1282200 TTTTCCT-TAAAATCAAAGTTCATCCCTTAAATAAGACACACATTGATTCTT-GTAAT-AGTCTC
65 TTTT--TGTAAAATCTAAGTTCGTTTCTCAAATAAGACAAACATGGATTCTTCAT-ATGA-TCTC
* ** *
1282262 CATTCTATTCAAGATT-GG-ATCCCAAAACACATTC
126 CATTCTTTTCGTGATTAGGCA-CCAAAAACACATTC
* * ** * * *
1282296 T-TT-TCATTAGGATACATGACATTGATGTTTTGG-TGTCACAAGAAAGGCTTTTCTTTTCACC-
1 TCTTCTCATTAGGATACATCATATTGATACTTTGGCT-TCGCAAGAAAAGCTTTTC-TTTGACCA
* * ** * * * * * *
1282357 GTTTTTAGTAAAATCAAAGTTTTTTTCTTAAATAAGACAAGCATGAATAC-TCATACTAATCGCC
64 ATTTTT-GTAAAATCTAAGTTCGTTTCTCAAATAAGACAAACATGGATTCTTCATA-TGATCTCC
* ** * **
1282421 GTTCTTTTCAAGATTAGGCACC-ATAA-ACATAG
127 ATTCTTTTCGTGATTAGGCACCAAAAACACATTC
* ** ** * *
1282453 TCTTCTCATTAGGAAATGTCATATTGATACTTTGGCTTCGCAAGAATGGCATTT-TTCGAACCAA
1 TCTTCTCATTAGGATACATCATATTGATACTTTGGCTTCGCAAGAAAAGCTTTTCTTTG-ACCAA
** * * ** * * * *
1282517 TTACTGTAAAGTCTAAGTTCATGCCTCAAATGAGATAAACATGGATTCTT-GTAGTGATCTTCAT
65 TTTTTGTAAAATCTAAGTTCGTTTCTCAAATAAGACAAACATGGATTCTTCATA-TGATCTCCAT
* *
1282581 TCATTTT-GTGATTAGGCACTATAAACACATTC
129 TC-TTTTCGTGATTAGGCACCAAAAACACATTC
** * * * * * * * * *
1282613 TC--CTTGTTAGGATAAATGATGTTGATGA-TTT-TCTTTTGCATTG-TAATCTTTTCTTTGCCC
1 TCTTCTCATTAGGATACATCATATTGAT-ACTTTGGC-TTCGCA-AGAAAAGCTTTTCTTTGACC
* * * * ** * * * *
1282673 TATTTTCCT-TAAAATCAAACTTCATCCCTTAAATAAGGCAAACATCGATTC-TCGTAAT-AGTC
63 AATTTT--TGTAAAATCTAAGTTCGTTTCTCAAATAAGACAAACATGGATTCTTCAT-ATGA-TC
** * *
1282735 TCCATTCTTTTCAAGATTGGGGAGCC---AA-A-ATTC
124 TCCATTCTTTTCGTGATTAGGCA-CCAAAAACACATTC
* * * * * * * *
1282768 -CCT-TCATTAGGATACATGACAATGATGCTTTGG-TGTCGCAAGAAAAGCGTTTCTTT-CCTCT
1 TCTTCTCATTAGGATACATCATATTGATACTTTGGCT-TCGCAAGAAAAGCTTTTCTTTGAC-CA
* * * * * * * * * *
1282829 ATTTTTGATAGAATCAAAGTTTGTTTCTTAAATAAAACAAACAT-AAATATTCATACTAATCTTC
64 ATTTTTG-TAAAATCTAAGTTCGTTTCTCAAATAAGACAAACATGGATTCTTCATA-TGATCTCC
* ** **
1282893 ATTCTTTTCAG-GATTAGGCACC-ATAA-GTATAA
127 ATTCTTTTC-GTGATTAGGCACCAAAAACACATTC
* * * * ***
1282925 TCTTCTTC-TTATGATACACCATATTGATACTTTGGCTTCGCATGAAAGGCTTTT-TTCCCTCCA
1 TCTTC-TCATTAGGATACATCATATTGATACTTTGGCTTCGCAAGAAAAGCTTTTCTT-TGACCA
* * * ** * * *
1282988 ATTTTTGTAAAGTCTATGTTCATGCCTCAAATGAGACAAACATGGATTC-T-AGTAAAGATCTTC
64 ATTTTTGTAAAATCTAAGTTCGTTTCTCAAATAAGACAAACATGGATTCTTCA-T-ATGATCTCC
** * * *
1283051 ATTCATTTT-GTGATTAGGCATTATAAATACATTA
127 ATTC-TTTTCGTGATTAGGCACCAAAAACACATTC
* * * * * * * * * *
1283085 TC--CTTATTAGGATAAATGATATTGTTGA-TTT-TCTTTTGCACGAAAATCTTTTCTTTGCCCT
1 TCTTCTCATTAGGATACATCATATTGAT-ACTTTGGC-TTCGCAAGAAAAGCTTTTCTTTGACCA
* ** ** *
1283146 ATTTTCCT-TAAAATC-AAGGTTCATCCTT-T-AAATAAGACACGCATCAATTC-TCGAAAT-AG
64 ATTTT--TGTAAAATCTAA-GTTCGT--TTCTCAAATAAGACAAACATGGATTCTTC-ATATGA-
* ** * *
1283205 TCTTCAGTTCTTTTCAAGATT-GGGATCCCAAAACACATTC
122 TCTCCA-TTCTTTTCGTGATTAGGCA-CCAAAAACACATTC
* * * * *
1283245 T-TT-TAATTAGGATACATGACATTGATGCTTTGG-TGTCGCAAGAAAAGCTTTTCTTTCTACCA
1 TCTTCTCATTAGGATACATCATATTGATACTTTGGCT-TCGCAAGAAAAGCTTTTCTTT-GACCA
* * * * * * * * * * * *
1283307 TTTTTTATAGAAT-TAAAGTTTGTCTCTTAAATAAGACAAACA-AGAATATTCAAACTAATCCCC
64 ATTTTTGTAAAATCT-AAGTTCGTTTCTCAAATAAGACAAACATGGATTCTTCATA-TGATCTCC
* * **
1283370 ATTC--TTCATAGACTTAGGCACC-ATAA-ACATAG
127 ATTCTTTTCGT-GA-TTAGGCACCAAAAACACATTC
* * * * * * **** *
1283402 TCTTCTCATTAGGATAAATCGTATTGAT-GTTTGGTTTCGAAAGAAAGGCTTTT-TACCTCAAAT
1 TCTTCTCATTAGGATACATCATATTGATACTTTGGCTTCGCAAGAAAAGCTTTTCTTTGACCAAT
* * ** * *
1283465 TTTAG-AAAACTCTAAGTCCGTGCCTCAAATGAGACAAACATGGATTC-T-AGTAATGATCTTCA
66 TTTTGTAAAA-TCTAAGTTCGTTTCTCAAATAAGACAAACATGGATTCTTCA-T-ATGATCTCCA
* * *
1283527 TTCATTTT-GTGTTTAGGCTCACTATAAACACATTC
128 TTC-TTTTCGTGATTAGG--CACCAAAAACACATTC
* * * * * * * * * * *
1283562 TC--CTCAATAGGATAAATGATATTTATGA-TTT-TCTTTTGCATGGAAATCTTTTCTTTGCCCT
1 TCTTCTCATTAGGATACATCATATTGAT-ACTTTGGC-TTCGCAAGAAAAGCTTTTCTTTGACCA
** * * * * * * **
1283623 ATTTTCCATAAAATC-ATAGTTC-ATCCATTAAATAAGATAAGCATCGATTCTTCA-AAAAGTCT
64 ATTTT-TGTAAAATCTA-AGTTCGTTTC-TCAAATAAGACAAACATGGATTCTTCATATGA-TCT
** * * *
1283685 CCATTCTTTTCAAGATTGGGAAGCC-AAATCACATTC
125 CCATTCTTTTCGTGATTAGGCA-CCAAAAACACATTC
* * * ** * * ** * *
1283721 CCTTCATCA--A-GATACATGACATTGGCACTTCGG-TGTTGCAAGGGAAGTTTTTCTTTCCACC
1 TCTTC-TCATTAGGATACATCATATTGATACTTTGGCT-TCGCAAGAAAAGCTTTTCTTT-GACC
* * * * * * * ** * *
1283782 ATTTTTTGTAGAATCAAAGTTTGTCTCTTAAATAACACAAACATAAATAC-ACATACT-AT-TAC
63 AATTTTTGTAAAATCTAAGTTCGTTTCTCAAATAAGACAAACATGGATTCTTCATA-TGATCT--
* * * ** * *
1283844 CCATTTTTCTTAG-GATTAGGAACCATCAACATAGT-
125 CCATTCTT-TTCGTGATTAGGCACCAAAAACACATTC
* * * * * **
1283879 T-TTCTCAATAGGATATATCATATTAATGCTTTGGCTTCGCAAGAAAGGCTTTT-TTCCACCAAT
1 TCTTCTCATTAGGATACATCATATTGATACTTTGGCTTCGCAAGAAAAGCTTTTCTTTGACCAAT
* * ** * * *
1283942 TTTTGTAAATTCTAAGTTCATCCCTCAAATGAGACAAACATTGATTC-T-AGTAATGATCTTCA-
66 TTTTGTAAAATCTAAGTTCGTTTCTCAAATAAGACAAACATGGATTCTTCA-T-ATGATCTCCAT
** * * * *
1284004 TCCATTCTATGATTGGGCACTATAAACACATTC
129 TCTTTTC-GTGATTAGGCACCAAAAACACATTC
* * ** * * * * * **
1284037 TC--CTCGTTAGGATAAATGGTTTTGATGA-TTT-TCTTTTGCATGGAACTCTTTTCTTTG-CCT
1 TCTTCTCATTAGGATACATCATATTGAT-ACTTTGGC-TTCGCAAGAAAAGCTTTTCTTTGACC-
* * * * * ** * * * ** * ** *
1284097 TATTTTCTTTAAAATCAAAGCTCATCCCTTAAATAAGGCAAGCATCAATTC-TCGTAACAGTATC
63 AATTTT-TGTAAAATCTAAGTTCGTTTCTCAAATAAGACAAACATGGATTCTTCATATGA-TCTC
* ** * *
1284161 CATTATTTTCAAGATTAGGAACCCAAAACACATTC
126 CATTCTTTTCGTGATTAGGCACCAAAAACACATTC
* * * * ** * * *
1284196 T-TT-TCATTAGGATACATGACAATGATGCTTTGG-TGTCTTAAGAAAAGCGTTTCTTT-CCTCT
1 TCTTCTCATTAGGATACATCATATTGATACTTTGGCT-TCGCAAGAAAAGCTTTTCTTTGAC-CA
* * * * * * * * * * *
1284257 GTTTTTGATAGAATCAAAGTTTGTTTCTTAAATAAAACAAACAT-AAATATTCATACTAATCTTC
64 ATTTTTG-TAAAATCTAAGTTCGTTTCTCAAATAAGACAAACATGGATTCTTCATA-TGATCTCC
* **
1284321 ATTCTTTTCAG-GATTAGGCACC-ATAA-ACATAA
127 ATTCTTTTC-GTGATTAGGCACCAAAAACACATTC
* * * ** * ***
1284353 TCTTCTCCTTATGATACACCATATTGATACTTTGGCTTCGCGTGAAAGGCTTTT-TTCCCTCCAA
1 TCTTCTCATTAGGATACATCATATTGATACTTTGGCTTCGCAAGAAAAGCTTTTCTT-TGACCAA
* * * * *
1284417 TTTTTGTAAAGTCTAAGTTCATTCCTCAAATAAGACAAATATGGATTC-T-AGTAATGATCTTCA
65 TTTTTGTAAAATCTAAGTTCGTTTCTCAAATAAGACAAACATGGATTCTTCA-T-ATGATCTCCA
* *
1284480 TTCGTTTT-GTGATT-GGACACTATAAACACATTC
128 TTC-TTTTCGTGATTAGG-CACCAAAAACACATTC
*
1284513 TC--CTCATTGGGATA
1 TCTTCTCATTAGGATA
1284527 AATGATAATG
Statistics
Matches: 2987, Mismatches: 976, Indels: 654
0.65 0.21 0.14
Matches are distributed among these distances:
153 1 0.00
154 10 0.00
155 105 0.04
156 178 0.06
157 373 0.12
158 899 0.30
159 965 0.32
160 358 0.12
161 81 0.03
162 16 0.01
163 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (160 bp):
TCTTCTCATTAGGATACATCATATTGATACTTTGGCTTCGCAAGAAAAGCTTTTCTTTGACCAAT
TTTTGTAAAATCTAAGTTCGTTTCTCAAATAAGACAAACATGGATTCTTCATATGATCTCCATTC
TTTTCGTGATTAGGCACCAAAAACACATTC
Found at i:1282699 original size:475 final size:475
Alignment explanation
Indices: 1279850--1285529 Score: 6802
Period size: 475 Copynumber: 12.0 Consensus size: 475
1279840 GGCCATATTT
** * * * **
1279850 CCTTAAATAAGATGACCATCGATTCTCGTAACTGTCGCCATTCTTTTCAAGATTGGGATTCCAAA
1 CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCCAAA
* *
1279915 ACACATTCCCCTT-ATTAGGATACATGACATTGACGCTTTAGTGTCGCAAGAAAAGCTTTTCTTT
66 ACACATT-CCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT
* ** * *
1279979 CCACCGTTTTTGATAGAATCAAAGTTTATTTCAAAAAGAAGGCAAACATGAATACT-ATACTAAT
130 CCACCGTTTTTG-TAGAATCAAAGTTTGTTTCTTAAATAAGACAAACATGAATACTCATACTAAT
** * * * *
1280043 CCCCATTCTTTAAAGAATTAGACACCAAAAACATAGTCTTCTCGTTAGGATACATCATATTGATA
194 CCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATA
** * *
1280108 CTTTGGCTTCGCAAGAAAGGCTTTTTT-TGACCAATTTTTGTAAAGTCTAAGTTTGTGTCTCAAA
259 CTTTGGCTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA
* * *
1280172 TGAGACAAACATGGATTCTTGTTATGATCTTCATTCATTTTGTGATTAGGCAC-AAAAACACATT
324 TGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
* * * ** * *
1280236 CTCTTCATTAGGATAAATGATATTGTTGATTTTCTTTTGCCTCAAAATCTTTTCTCTGCCTTATT
389 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATT
*
1280301 TTCATTAAAATCAAAGTTCATC
454 TTCCTTAAAATCAAAGTTCATC
* * * * * *
1280323 CCTTAAAAAAGACAAGCATCGATTTTCATAACAGTGTCCATTCTTTTCAAGATTGGGAAGCTAAA
1 CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCCAAA
* * * * *
1280388 ACACATTTCCTTCAGTAGGATACATGACATTGATGCTTTGGTGTCACAAAAAAAGCTTTTCCTTC
66 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
* * *
1280453 CACCGTTTTTGACAGAATCAAGGTTTGTTTCTTAAGTAAGACAAACATGAATACTCATACTAAT-
131 CACCGTTTTTG-TAGAATCAAAGTTTGTTTCTTAAATAAGACAAACATGAATACTCATACTAATC
* * *
1280517 CCCACTCTTTTCAGGATTAGACACCATAAACATAGTCCTCTCATTAGGATACATCATATTGATAC
195 CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATAC
** **
1280582 TTTGGCTTCGCAAGAAAGGCTTTTTT-TGACCAATTTTTGTAAAGTCTAAGTTCGTTTCTCAAAT
260 TTTGGCTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * *
1280646 GAGACAAACATGGATTCTTGTTATGATCTTCATTCATTTTGTGATTAGGCAC-AAAAACACATTC
325 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* * * * * *
1280710 TCTTCATTAGGATAAATGATATTGCTGATTTTCTTTTGCCTCGAAATCTTTTCTCTGCCTTATTT
390 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTT
*
1280775 TCATTAAAATCAAAGTTCATC
455 TCCTTAAAATCAAAGTTCATC
* * * * * *
1280796 CCTTAAAAAAGACAAGCATCGATTTTCATAACAGTGTCCATTCTTTTCAAGATTGGGAAGCTAAA
1 CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCCAAA
* * * *
1280861 ACACATTTCCTTCAGTAGGATACATGACATTGATGCTTTGGTGTCGCAAAAAAAGCTTTTCCTTC
66 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
* * *
1280926 CACCGTTTTTGACAGAATCAAGGTTTGTTTCTTAAGTAAGACAAACATGAATACTCATACTAAT-
131 CACCGTTTTTG-TAGAATCAAAGTTTGTTTCTTAAATAAGACAAACATGAATACTCATACTAATC
* * *
1280990 CCCACTCTTTTCAGGATTAGACACCATAAACATAGTCCTCTCATTAGGATACATCATATTGATAC
195 CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATAC
* *** * * *
1281055 TTTGGCTTCGCAAGAATGGCTTTTTTTTTACCAAATTTAGTGAAGTCTAAGTTCGTGCCTCAAAT
260 TTTGGCTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * *
1281120 GAGACAAACATGGATTCTTGTAATGATCTTCATTCATTTTGTGATTAGGCGCAATAAACACATTC
325 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* *
1281185 TCCTCAATAGGATAAATGATATTGATGGTTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTT
390 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTT
* *
1281250 TCCTTAAAATCAAAATTCTTC
455 TCCTTAAAATCAAAGTTCATC
* * * * * *
1281271 CCATAAAAAAGACAAGCATCGATTCTCATAACAGTCTCCAATCTTTTCTAGATTGGGAAGCCAAA
1 CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAA-CCCAA
* * * ** *
1281336 AACATATTCCCTTCATTAGGATACACGACCTTGACACTTTGGTGTTGCAAGAAAAGCTTTTCTTT
65 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT
*
1281401 CCACCGTTTTTGATAGAATCAAAGTTTGTTTCATAAATAAGACAAACATGAATACTCATACTAAT
130 CCACCGTTTTTG-TAGAATCAAAGTTTGTTTCTTAAATAAGACAAACATGAATACTCATACTAAT
* * *
1281466 CTCCATTCTTTTCAGGATTAGACACCATAAACATAGTCTTCTCATTAGGATACGTCATATTGATA
194 CCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATA
* *
1281531 CTTTGGCTTCGCAAG-AAGGCTTTTCTT-CTACCGATTTTTGTAAAGTCTAAGTTCGTGCCTCAA
259 CTTTGGCTTCGCAAGAAAGGCTTTT-TTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAA
* * * * *
1281594 ATGTGACAGACATGGATTCTTGTTATGATCTTCATTCATTTTGTGATTAAGCACTATAAACA-AT
323 ATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA-
*
1281658 TTCTCCTCATTAAGATAAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTA
387 TTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTA
* *
1281723 TTTTCCTAAAAATCAAAGCTCATC
452 TTTTCCTTAAAATCAAAGTTCATC
* * * * * *
1281747 GCTTAAATAAGACAAGGATCGATTCCCGTAACAGTTTCCATTCTTTTAAAGATTAGGAACCCAAA
1 CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCCAAA
* ** * **
1281812 ATACATTCTTTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTGCC
66 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
* * * *
1281877 CTCCGTTTTTTATAGAATCAAAGTTTGTTTCTTAAA-AAAACAAATATGAATACTCATACTAATC
131 CACCG-TTTTTGTAGAATCAAAGTTTGTTTCTTAAATAAGACAAACATGAATACTCATACTAATC
* * * * * *
1281941 CCCATTCTTTTTAGGATTAGGCACTATAAACATAATTTTCTCCTTAGGATACATAATATTGATAC
195 CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATAC
* * * *
1282006 TTTGGTTTCGCGAGAAAGGCTTTTTTCCCTCCAATTTTTGTAAAGTCTACG-TCTGTGCCTCAAA
260 TTTGGCTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTC-GTGCCTC--A
** * * * *
1282070 AATGAGATGAACATGAATTCTAGTAATGATCTTCATTCATTTTGTGGTTAGGCACTACAAATACA
322 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA
* * * ** * * *
1282135 TTCTCCTCATTAGGATAAATTATATTGTTAATTTTCTTAAGCATGGATATATTTTCTTTGCCCTA
387 TTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTA
1282200 TTTTCCTTAAAATCAAAGTTCATC
452 TTTTCCTTAAAATCAAAGTTCATC
* * * * *
1282224 CCTTAAATAAGACACA-CATTGATTCTTGTAATAGTCTCCATTCTATTCAAGATT-GGATCCCAA
1 CCTTAAATAAGACA-AGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCCAA
** * * *
1282287 AACACATTCTTTTCATTAGGATACATGACATTGATGTTTTGGTGTCACAAGAAAGGCTTTTCTTT
65 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT
* * * *
1282352 TCACCGTTTTTAGTAAAATCAAAGTTTTTTTCTTAAATAAGACAAGCATGAATACTCATACTAAT
130 CCACCGTTTTT-GTAGAATCAAAGTTTGTTTCTTAAATAAGACAAACATGAATACTCATACTAAT
* * * * **
1282417 CGCCGTTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGAAATGTCATATTGATA
194 CCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATA
* * ** ** *
1282482 CTTTGGCTTCGCAAGAATGGCATTTTTCGAACCAATTACTGTAAAGTCTAAGTTCATGCCTCAAA
259 CTTTGGCTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA
* * *
1282547 TGAGATAAACATGGATTCTTGTAGTGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
324 TGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
** * *
1282612 CTCCTTGTTAGGATAAATGATGTTGATGATTTTCTTTTGCATTGTAATCTTTTCTTTGCCCTATT
389 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATT
*
1282677 TTCCTTAAAATCAAACTTCATC
454 TTCCTTAAAATCAAAGTTCATC
* * * * *
1282699 CCTTAAATAAGGCAAACATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGGAGCC--A
1 CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCCAAA
* *
1282762 A-A-ATTCCCTTCATTAGGATACATGACAATGATGCTTTGGTGTCGCAAGAAAAGCGTTTCTTTC
66 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
* ** * * *
1282825 CTCTATTTTTGATAGAATCAAAGTTTGTTTCTTAAATAAAACAAACATAAATATTCATACTAATC
131 CACCGTTTTTG-TAGAATCAAAGTTTGTTTCTTAAATAAGACAAACATGAATACTCATACTAATC
** ** * * *
1282890 TTCATTCTTTTCAGGATTAGGCACCATAAGTATAATCTTCTTC-TTATGATACACCATATTGATA
195 CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC-TCATTAGGATACATCATATTGATA
* * * *
1282954 CTTTGGCTTCGCATGAAAGGCTTTTTTCCCTCCAATTTTTGTAAAGTCTATGTTCATGCCTCAAA
259 CTTTGGCTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA
* * *
1283019 TGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCATTATAAATACATT
324 TGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
* * * *
1283084 ATCCTTATTAGGATAAATGATATTGTTGATTTTCTTTTGCA-CGAAAATCTTTTCTTTGCCCTAT
389 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATTG-AAATCTTTTCTTTGCCCTAT
*
1283148 TTTCCTTAAAATCAAGGTTCATC
453 TTTCCTTAAAATCAAAGTTCATC
* * * * * * *
1283171 CTTTAAATAAGACACGCATCAATTCTCGAAATAGTCTTCAGTTCTTTTCAAGATTGGGATCCCAA
1 CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCA-TTCTTTTCAAGATTGGGAACCCAA
** *
1283236 AACACATTCTTTTAATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT
65 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT
* * * * * * * *
1283301 CTACCATTTTTTATAGAATTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATATTCAAACTAAT
130 CCACC-GTTTTTGTAGAATCAAAGTTTGTTTCTTAAATAAGACAAACATGAATACTCATACTAAT
* * *
1283366 CCCCATTC--TTCATAGACTTAGGCACCATAAACATAGTCTTCTCATTAGGATAAATCGTATTGA
194 CCCCATTCTTTTCA-GGA-TTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGA
* * * * * * * *
1283429 T-GTTTGGTTTCGAAAGAAAGGCTTTTTACCTCA--AATTTTAGAAAACTCTAAGTCCGTGCCTC
257 TACTTTGGCTTCGCAAGAAAGGCTTTTTTCC-CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTC
*
1283491 AAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGTTTAGGCTCACTATAAAC
321 AAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGG--CACTATAAAC
* * *
1283556 ACATTCTCCTCAATAGGATAAATGATATTTATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
384 ACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCC
* *
1283621 CTATTTTCCATAAAATCATAGTTCATC
449 CTATTTTCCTTAAAATCAAAGTTCATC
* * * * *
1283648 CATTAAATAAGATAAGCATCGATTCTTC-AAAAAGTCTCCATTCTTTTCAAGATTGGGAAGCCAA
1 CCTTAAATAAGACAAGCATCGATTC-TCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCCAA
* * * *** * * ** *
1283712 ATCACATTCCCTTCATCAAGATACATGACATTGGCACTTCGGTGTTGCAAGGGAAGTTTTTCTTT
65 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT
* * * * * *
1283777 CCACCATTTTTTGTAGAATCAAAGTTTGTCTCTTAAATAACACAAACATAAATACACATACTATT
130 CCACC-GTTTTTGTAGAATCAAAGTTTGTTTCTTAAATAAGACAAACATGAATACTCATACTAAT
* * * * * * * *
1283842 ACCCATT-TTTCTTAGGATTAGGAACCATCAACATAGTTTTCTCAATAGGATATATCATATTAAT
194 CCCCATTCTTT-TCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGAT
* * * *
1283906 GCTTTGGCTTCGCAAGAAAGGCTTTTTT-CCACCAATTTTTGTAAATTCTAAGTTCATCCCTCAA
258 ACTTTGGCTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAA
* * * * *
1283970 ATGAGACAAACATTGATTCTAGTAATGATCTTCATCCATTCTATGATTGGGCACTATAAACACAT
323 ATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
* * * * * *
1284035 TCTCCTCGTTAGGATAAATGGTTTTGATGATTTTCTTTTGCATGGAACTCTTTTCTTTGCCTTAT
388 TCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTAT
* *
1284100 TTTCTTTAAAATCAAAGCTCATC
453 TTTCCTTAAAATCAAAGTTCATC
* * * * *
1284123 CCTTAAATAAGGCAAGCATCAATTCTCGTAACAGTATCCATTATTTTCAAGATTAGGAACCCAAA
1 CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCCAAA
** * ** *
1284188 ACACATTCTTTTCATTAGGATACATGACAATGATGCTTTGGTGTCTTAAGAAAAGCGTTTCTTTC
66 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
* * * * *
1284253 CTCTGTTTTTGATAGAATCAAAGTTTGTTTCTTAAATAAAACAAACATAAATATTCATACTAATC
131 CACCGTTTTTG-TAGAATCAAAGTTTGTTTCTTAAATAAGACAAACATGAATACTCATACTAATC
** * * * *
1284318 TTCATTCTTTTCAGGATTAGGCACCATAAACATAATCTTCTCCTTATGATACACCATATTGATAC
195 CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATAC
** * * *
1284383 TTTGGCTTCGCGTGAAAGGCTTTTTTCCCTCCAATTTTTGTAAAGTCTAAGTTCATTCCTCAAAT
260 TTTGGCTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * *
1284448 AAGACAAATATGGATTCTAGTAATGATCTTCATTCGTTTTGTGATT-GGACACTATAAACACATT
325 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGG-CACTATAAACACATT
* * * ** * *
1284512 CTCCTCATTGGGATAAATGATAATGATGATTTTCTTTAGCACAGAAATCTTTTCTTTGGCTTATT
389 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATT
*
1284577 TTCCTTAAAATCGAAGTTCATC
454 TTCCTTAAAATCAAAGTTCATC
* ** *
1284599 GCTT--A-AAGACAAGCATCGATTCTCACAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAA
1 CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCCAAA
* * * * *
1284661 ACACATTCCCTTCATTAGGATGCGTGACATTGATGCTTTGGTGTCACAAGAAAACCTTTACTTTC
66 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
* * *
1284726 GACCG-TTTTGATAG--TCAAAG-TT-TATCATATAAATATGACAAACATGAATACTCATAAC-A
131 CACCGTTTTTG-TAGAATCAAAGTTTGTTTC-T-TAAATAAGACAAACATGAATACTCAT-ACTA
* * * ** *
1284785 ATCCCCATTCTTTTCAAGATTAGGCACCATAAACAAAGTCTTTTCCCTAGGATACATGATATTGA
192 ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGA
*** * * * * * * *
1284850 CGTTTTGG-TTACACAAGAAAGGCGTTTTTCCCACTAATTTTTGTAATGTATAAGTTTGTACCTC
257 TACTTTGGCTT-CGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTC
* * * * *
1284914 AAATGAGACAAACATGGATTCTACTAATGATCTTCACTCATTCTATAATTAGGCACTATAAACAC
321 AAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
* *
1284979 ATTCTTCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCA-TGAAAATCTTCTCTTTGCCC
386 ATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATTG-AAATCTTTTCTTTGCCC
*
1285043 TATTTTCTTTAAAATCAAAGTTCATC
450 TATTTTCCTTAAAATCAAAGTTCATC
* * * * * * * * * *
1285069 ACTTAAATAAGATAAGCTTCGATTTTCATGACAATTTCCACTCTTTTCAAGATTGGGAACCAAAA
1 CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCCAAA
* * *
1285134 ACACATTCCCTTCATTAGGATACGTGACATTGATGCTTTGGTGTCACAAGAAAAGCATTTCTTTC
66 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
* * * * * ** * * *
1285199 CACCGTTTTGGTAGAATTAAAATTTGTCTCTTCAATAAGACAAGTAAGAATACTCATATTAATCA
131 CACCGTTTTTGTAGAATCAAAGTTTGTTTCTTAAATAAGACAAACATGAATACTCATACTAATCC
* * * * **
1285264 CCACTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATA-AGCGATATTGTTGT
196 CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATC-ATATTGATAC
* * * * * *
1285328 TTTGGTTTTGCAAGAAAGGCTTTTTTCTCACCAATTTTTGAAAAGTTTAAGTTCGTGTCTCAAAT
260 TTTGGCTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * * * * ** * **
1285393 GAGACAAACATAGATTCTACTAATGATCTACACTCATTTTATGATTAAACACTGTGCACACATTC
325 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
** * * * *
1285458 TTGTAATTAGGATAATTGATATTGAGGATATTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATT
390 TCCTCATTAGGATAAATGATATTGATGAT-TTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATT
1285522 TTCCTTAA
454 TTCCTTAA
1285530 CATGACAAGC
Statistics
Matches: 4509, Mismatches: 630, Indels: 134
0.86 0.12 0.03
Matches are distributed among these distances:
468 3 0.00
469 6 0.00
470 266 0.06
471 6 0.00
472 395 0.09
473 949 0.21
474 206 0.05
475 1093 0.24
476 829 0.18
477 742 0.16
478 14 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (475 bp):
CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCCAAA
ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
CACCGTTTTTGTAGAATCAAAGTTTGTTTCTTAAATAAGACAAACATGAATACTCATACTAATCC
CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATACT
TTGGCTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATG
AGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT
CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTT
CCTTAAAATCAAAGTTCATC
Found at i:1285775 original size:269 final size:269
Alignment explanation
Indices: 1285291--1285798 Score: 617
Period size: 269 Copynumber: 1.9 Consensus size: 269
1285281 AGGCACCATA
* * * *
1285291 AACATAGTCTTCTCATTAGGATAAGCGATATTGTTGTTTTGGTTTTGCAAGAAAGGCTTTTTTCT
1 AACATAGTCTTCTCATTAGGATAAGCGATATTGATGTTTTGGTTTCGCAAGAAAGGCATTTTTCC
* * * **
1285356 CACCAATTTTTGAAAAGTTTAAGTTCGTGTCTCAAATGAGACAAACATAGATTCTACTAATGATC
66 CACCAATTTTTGAAAAGTCTAAGTTCATGTCTCAAATAAGACAAACATAGAAACTACTAATGATC
* ** * ** * *
1285421 TACACTCATTTTATGATTAAACACTGTGCACACATTCTTGTAATTAGGATAATTGATATTGAGGA
131 TACACTCATTTTATGATTAAACACTATAAACACAATCTCCTAATTAGGATAAATGATAATGAGGA
* * *
1285486 TATTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAACATGACAAGCATCAATTCTCA
196 TATTTTTTTGCATAGAAATCTTTTCTTTACCATATTTTCCTTAACATGACAAGCATCAATTCTCA
1285551 AAATTAGGC
261 AAATTAGGC
* * * * *
1285560 AACATAGTCTTCTCATTATGATACA-TGATATTGATGTTTTGGTTTCGTAGGAAGGGCATTTTTC
1 AACATAGTCTTCTCATTAGGATA-AGCGATATTGATGTTTTGGTTTCGCAAGAAAGGCATTTTTC
* * * *
1285624 CCACCAATTTTTGTAAAGTCTAAGTTCAT-TCCTCAAATAAGACAGATAT-GCAAACTAGTAATG
65 CCACCAATTTTTGAAAAGTCTAAGTTCATGT-CTCAAATAAGACAAACATAG-AAACTACTAATG
* * * * *** *
1285687 ATCTTCATTTATTTTGTGATTTGGCACTATAAACACAATCTCCTCATTAGGATAAATGATAATGA
128 ATCTACACTCATTTTATGATTAAACACTATAAACACAATCTCCTAATTAGGATAAATGATAATGA
* *
1285752 TGATTTTTTTTTGCATAGAAATCTTTTCTTTACCATATTTTCCTTAA
193 GGATATTTTTTTGCATAGAAATCTTTTCTTTACCATATTTTCCTTAA
1285799 AATCGAAGTT
Statistics
Matches: 197, Mismatches: 39, Indels: 6
0.81 0.16 0.02
Matches are distributed among these distances:
268 2 0.01
269 194 0.98
270 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.40
Consensus pattern (269 bp):
AACATAGTCTTCTCATTAGGATAAGCGATATTGATGTTTTGGTTTCGCAAGAAAGGCATTTTTCC
CACCAATTTTTGAAAAGTCTAAGTTCATGTCTCAAATAAGACAAACATAGAAACTACTAATGATC
TACACTCATTTTATGATTAAACACTATAAACACAATCTCCTAATTAGGATAAATGATAATGAGGA
TATTTTTTTGCATAGAAATCTTTTCTTTACCATATTTTCCTTAACATGACAAGCATCAATTCTCA
AAATTAGGC
Found at i:1286268 original size:744 final size:744
Alignment explanation
Indices: 1284835--1286273 Score: 1739
Period size: 744 Copynumber: 1.9 Consensus size: 744
1284825 TTTTCCCTAG
* * *
1284835 GATACATGATATTGACGTTTTGGTTACACAAGAAAGGCGTTTTTCCCACTAATTTTTGTAATGTA
1 GATACATGATATTGACGTTTTGGTTACACAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTA
** * * **
1284900 TAAGTTTGTACCTCAAATGAGACAAACATGGATTCTACTAATGATCTTCACTCATTCTATAATTA
66 TAAGTTCATACCTCAAATAAGACAAACATGCAAACTACTAATGATCTTCACTCATTCTATAATTA
* * *
1284965 GGCACTATAAACACATTCTTCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAAT
131 GGCACTATAAACACAATCTCCTCATTAGGATAAATGATAATGATGATTTTCTTTTGCATGAAAAT
* * * * **
1285030 CTTCTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCACTTAAATAAGATAAGCTTCGATTTT
196 CTTCTCTTTACCATATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGATAAGCATCGATTCC
* * ** * *
1285095 CATGACAATTTCCACTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACGTG
261 CATAACAATCTCCACTCTTTTCAAGATCAGGAACCAAAAACACATTCCCTTCATTAAGATACGTC
* * * *
1285160 ACATTGATGCTTTGGTGTCACAAGAAAAGCATTTCTTTCCACCGTTTTGGTAGAATTAAAATTTG
326 ACATTGATGCTTTGGTGTCACAAGAAAAGCATTTCTGTCCACCGTTTTGATAGAATCAAAATATG
* * * *
1285225 TCTCTTCAATAAGACAAGTAAGAATACTCATATTAATCACCACTCTTTTCAAGATTAGGCACCAT
391 TCTATTAAATAAGACAAATAAGAATACTCATACTAATCACCACTCTTTTCAAGATTAGGCACCAT
* * * *
1285290 AAACATAGTCTTCTCATTAGGATAAGCGATATTGTTGTTTTGGTTTTGCAAGAAAGGCTTTTTTC
456 AAACATAGTCTTCTCATTAGGATAAGCGATAATGATGTTTTGGTTTCGCAAGAAAGGCATTTTTC
* * * * *
1285355 TCACCAATTTTTGAAAAGTTTAAGTTCGTGTCTCAAATGAGACAAACATAGATTCTACTAATGAT
521 CCACCAATTTTTGAAAAGTCTAAGTTCATGTCTCAAATAAGACAAACATAGATTCTACTAAAGAT
* ** * * * *
1285420 CTACACTCATTTTATGATTAAACACTGTGCACACATTCTTGTAATTAGGATAATTGATATTGAGG
586 CTACACTCATTTTATGATTAAACACTATAAACACATTCTTCTAATTAGGAGAAATGATAATGAGG
* ***
1285485 ATATTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAACATGACAAGCATCAATTCTC
651 ATATTTTTTAGCACAAAAATCTTTTCTTTGCCCTATTTTCCTTAACATGACAAGCATCAATTCTC
1285550 AAAATTAGGCAACATAGTCTTCTCATTAT
716 AAAATTAGGCAACATAGTCTTCTCATTAT
* * ** * * *
1285579 GATACATGATATTGATGTTTTGGTTTCGTAGGAAGGGCATTTTTCCCACCAATTTTTGTAAAGTC
1 GATACATGATATTGACGTTTTGGTTACACAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTA
* * * * * * * * * *
1285644 TAAGTTCATTCCTCAAATAAGACAGATATGCAAACTAGTAATGATCTTCATTTATTTTGTGATTT
66 TAAGTTCATACCTCAAATAAGACAAACATGCAAACTACTAATGATCTTCACTCATTCTATAATTA
*
1285709 GGCACTATAAACACAATCTCCTCATTAGGATAAATGATAATGATGATTTTTTTTTGCAT-AGAAA
131 GGCACTATAAACACAATCTCCTCATTAGGATAAATGATAATGATGATTTTCTTTTGCATGA-AAA
* * * *
1285773 TCTTTTCTTTACCATATTTTCCTTAAAATCGAAGTTCATCGCTTAAATAGGACT-AGCATCGATT
195 TCTTCTCTTTACCATATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGA-TAAGCATCGATT
* * * *
1285837 CCCGTAACAGTCTCCATTCTTTTCAAGATCAGGAACCAAAAACACATTCCCTGT-ATTAAGATGC
259 CCCATAACAATCTCCACTCTTTTCAAGATCAGGAACCAAAAACACATTCCCT-TCATTAAGATAC
* * * * * * *
1285901 GTCACATTGATGCTTTGGTGTCATAGGCAAAGCTTTTCTGTCGACCGTTTTTGATCGAATCAAAG
323 GTCACATTGATGCTTTGGTGTCACAAGAAAAGCATTTCTGTCCACCG-TTTTGATAGAATCAAAA
* * *
1285966 TATGTCTATTAAATAAGACAAATATGAATACTCATACTAATCTCCA-T-TTTTCCCAGAATTAGG
387 TATGTCTATTAAATAAGACAAATAAGAATACTCATACTAATCACCACTCTTTT-CAAG-ATTAGG
* *
1286029 CACCATAAACATAGTCTTCTCATTATGATACA-CGATAATGATGTTTTGGTTTCGTAAGAATA-G
450 CACCATAAACATAGTCTTCTCATTAGGATA-AGCGATAATGATGTTTTGGTTTCGCAAGAA-AGG
*** * * *
1286092 CATTTTTCCCACCAATTTTTTTCAAGTCTAAGTTCAT-TCCTTAAATAAGACAGATAT-GTATTC
513 CATTTTTCCCACCAATTTTTGAAAAGTCTAAGTTCATGT-CTCAAATAAGACAAACATAG-ATTC
* * * * *** *
1286155 TAGTAAAGATCTTCATTCATTTTGTGATTGGGCACTATAAACACATT-TTCCTCATTAGGAGAAA
576 TACTAAAGATCTACACTCATTTTATGATTAAACACTATAAACACATTCTT-CTAATTAGGAGAAA
* * *
1286219 TGATAATGATGAT-TTTTTTAGCACAAAAATCTTTTCTTTTCCTTATTTTCCTTAA
640 TGATAATGAGGATATTTTTTAGCACAAAAATCTTTTCTTTGCCCTATTTTCCTTAA
1286274 AATCGAAATT
Statistics
Matches: 577, Mismatches: 107, Indels: 22
0.82 0.15 0.03
Matches are distributed among these distances:
743 5 0.01
744 351 0.61
745 219 0.38
746 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (744 bp):
GATACATGATATTGACGTTTTGGTTACACAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTA
TAAGTTCATACCTCAAATAAGACAAACATGCAAACTACTAATGATCTTCACTCATTCTATAATTA
GGCACTATAAACACAATCTCCTCATTAGGATAAATGATAATGATGATTTTCTTTTGCATGAAAAT
CTTCTCTTTACCATATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGATAAGCATCGATTCC
CATAACAATCTCCACTCTTTTCAAGATCAGGAACCAAAAACACATTCCCTTCATTAAGATACGTC
ACATTGATGCTTTGGTGTCACAAGAAAAGCATTTCTGTCCACCGTTTTGATAGAATCAAAATATG
TCTATTAAATAAGACAAATAAGAATACTCATACTAATCACCACTCTTTTCAAGATTAGGCACCAT
AAACATAGTCTTCTCATTAGGATAAGCGATAATGATGTTTTGGTTTCGCAAGAAAGGCATTTTTC
CCACCAATTTTTGAAAAGTCTAAGTTCATGTCTCAAATAAGACAAACATAGATTCTACTAAAGAT
CTACACTCATTTTATGATTAAACACTATAAACACATTCTTCTAATTAGGAGAAATGATAATGAGG
ATATTTTTTAGCACAAAAATCTTTTCTTTGCCCTATTTTCCTTAACATGACAAGCATCAATTCTC
AAAATTAGGCAACATAGTCTTCTCATTAT
Found at i:1286725 original size:475 final size:471
Alignment explanation
Indices: 1285560--1287223 Score: 1901
Period size: 475 Copynumber: 3.5 Consensus size: 471
1285550 AAAATTAGGC
* * * * *
1285560 AACATAGTCTTCTCATTATGATACATGATATTGATGTTTTGGTTTCGTAGGAAGGGCATTTTTCC
1 AACATAGTCTTCTCATTAGGATACACGATATTGATGTTTTGGTTTCGCAAGAAAGGCATTTTTCC
* * * ** *
1285625 CACCAATTTTTGTAAAGTCTAAGTTCATTCCTCAAATAAGACAGATATGCAAACTAGTAATGATC
66 CACCAATTTTTGTAAAGTCTAAGTTCATTCCTCAAATAAGACAAACATGGATTCTACTAATGATC
* * * * * *
1285690 TTCATTTATTTTGTGATTTGGCACTATAAACACAATCTCCTCATTAGGATAAATGATAATGATGA
131 TTCACTCATTTTATGATTAGGCACTATAAACACATTCTTCTCATTAGGATAAATGATAATGATGA
* * *
1285755 TTTTTTTTTGCAT-AGAAATCTTTTCTTTACCATATTTTCCTTAAAATCGAAGTTCATCGCTTAA
196 -TTTTTTTTGCATGA-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCGAAATTCATCGCTTAA
* * **
1285819 ATAGGACTAGCATCGATTC-CCGTAACAGTCTCCATTCTTTTCAAGATCAGGAACCAAAAACACA
259 ATAGGACAAGCATCGATTCTTC--AACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACA
* * * * * * *
1285883 TTCCCTGT-ATTAAGATGCGTCACATTGATGCTTTGGTGTCATAGGCAAAGCTTTTCTGTCGACC
322 TTCCCT-TCATTAGGATGCGTGACATTGATGCTTTGGTGTCACAAG-AAAACCTTTCTTTCGACC
* * *
1285947 GTTTTTGATCGAATCAAAGTATGTCTATTAAATAAGACAAATATGAATACTCAT-ACTAATCTCC
385 G-TTTTGATAGAATCAAAGTTTGTCTA-TAAATAAGACAAATATGAATACTCATAAC-AATCACC
* *
1286011 ATT-TTTCCCAGAATTAGGCACCATA
447 ATTCTTTTCAAG-ATTAGGCACCATA
* * *
1286036 AACATAGTCTTCTCATTATGATACACGATAATGATGTTTTGGTTTCGTAAGAATA-GCATTTTTC
1 AACATAGTCTTCTCATTAGGATACACGATATTGATGTTTTGGTTTCGCAAGAA-AGGCATTTTTC
* * * * * * * *
1286100 CCACCAATTTTTTTCAAGTCTAAGTTCATTCCTTAAATAAGACAGATATGTATTCTAGTAAAGAT
65 CCACCAATTTTTGTAAAGTCTAAGTTCATTCCTCAAATAAGACAAACATGGATTCTACTAATGAT
* * * *
1286165 CTTCATTCATTTTGTGATTGGGCACTATAAACACATT-TTCCTCATTAGGAGAAATGATAATGAT
130 CTTCACTCATTTTATGATTAGGCACTATAAACACATTCTT-CTCATTAGGATAAATGATAATGAT
* ** * * *
1286229 GATTTTTTTAGCACAAAAATCTTTTCTTTTCCTTATTTTCCTTAAAATCGAAATTCATTGCTTAA
194 GATTTTTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCGAAATTCATCGCTTAA
1286294 ATAGGACAAGCATCGATTCTTACAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACAT
259 ATAGGACAAGCATCGATTCTT-CAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACAT
1286359 TCCCTTCATTAGGATGCGTGACATTGATGCTTTGGTGTCACAAGAAAACCTTTACTTTCGACCGT
323 TCCCTTCATTAGGATGCGTGACATTGATGCTTTGGTGTCACAAGAAAACCTTT-CTTTCGACCGT
* * * * *
1286424 TTTGATAGAGTCAAAGTTTATCATATAAATATGACAAACATGAATACTCATAACAATCCCCATTC
387 TTTGATAGAATCAAAGTTTGTC-TATAAATAAGACAAATATGAATACTCATAACAATCACCATTC
1286489 TTTTCAAGATTAGGCACCATA
451 TTTTCAAGATTAGGCACCATA
* * ** * * * * *
1286510 AACAAAGTCTTTTCCCTAGGATACATGATATTGACGTTTTGGTTACACAAGAAAGGCGTTTTTCC
1 AACATAGTCTTCTCATTAGGATACACGATATTGATGTTTTGGTTTCGCAAGAAAGGCATTTTTCC
* * * ** * *
1286575 CACTAATTTTTGTAATGTATAAGTTTGTACCTCAAATGAGACAAACATGGATTCTACTAATGATC
66 CACCAATTTTTGTAAAGTCTAAGTTCATTCCTCAAATAAGACAAACATGGATTCTACTAATGATC
* * * *
1286640 TTCACTCATTCTATAATTAGGCACTATAAACACATTCTTCTCATTAGGATAAATGATATTGACGA
131 TTCACTCATTTTATGATTAGGCACTATAAACACATTCTTCTCATTAGGATAAATGATAATGATGA
* *
1286705 TTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATC-AAAGTTCATCGCTGAA
196 TTTT-TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCGAAA-TTCATCGCTTAA
** * * * * * *
1286769 ATAAAATAAGCTTCGATT-TTCGTGACAATTTCCACTCTTTTCAAGATTGGGAACCAAAAACACA
259 ATAGGACAAGCATCGATTCTTC--AACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACA
* * *
1286833 TTCCCTTCATTAGGATACGTGACATTGATGCTTTGGTGTCACAAGAAAAGCATTTCTTTCCACCG
322 TTCCCTTCATTAGGATGCGTGACATTGATGCTTTGGTGTCACAAGAAAA-CCTTTCTTTCGACCG
* * * * * * * ** *
1286898 TTTTGGTAGAATTAAAATTTGTCTCTTCAATAAGACAAGTAAGAATACTCATATTAATCACCACT
386 TTTTGATAGAATCAAAGTTTGTCT-ATAAATAAGACAAATATGAATACTCATAACAATCACCATT
1286963 CTTTTCAAGATTAGGCACCATA
450 CTTTTCAAGATTAGGCACCATA
* * *
1286985 AACATAGTCTTCTCATTAGGATA-AGCGATATTGTTGTTTTGGTTTTGCAAGAAAGGCTTTTTTC
1 AACATAGTCTTCTCATTAGGATACA-CGATATTGATGTTTTGGTTTCGCAAGAAAGGCATTTTTC
* * * * * *
1287049 TCACCAATTTTTGAAAAGTTTAAGTTCGTGT-CTCAAATGAGACAAACATAGATTCTACTAATGA
65 CCACCAATTTTTGTAAAGTCTAAGTTCAT-TCCTCAAATAAGACAAACATGGATTCTACTAATGA
* ** * ** * * * * *
1287113 TCTACACTCATTTTATGATTAAACACTGTGCACACATTCTTGTAATTAGGATAATTGATATTGAG
129 TCTTCACTCATTTTATGATTAGGCACTATAAACACATTCTTCTCATTAGGATAAATGATAATGAT
*
1287178 GATATTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAA
194 GAT-TTTTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAA
1287224 CATGACAAGC
Statistics
Matches: 1023, Mismatches: 144, Indels: 43
0.85 0.12 0.04
Matches are distributed among these distances:
473 2 0.00
474 239 0.23
475 597 0.58
476 184 0.18
477 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (471 bp):
AACATAGTCTTCTCATTAGGATACACGATATTGATGTTTTGGTTTCGCAAGAAAGGCATTTTTCC
CACCAATTTTTGTAAAGTCTAAGTTCATTCCTCAAATAAGACAAACATGGATTCTACTAATGATC
TTCACTCATTTTATGATTAGGCACTATAAACACATTCTTCTCATTAGGATAAATGATAATGATGA
TTTTTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCGAAATTCATCGCTTAAAT
AGGACAAGCATCGATTCTTCAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCC
CTTCATTAGGATGCGTGACATTGATGCTTTGGTGTCACAAGAAAACCTTTCTTTCGACCGTTTTG
ATAGAATCAAAGTTTGTCTATAAATAAGACAAATATGAATACTCATAACAATCACCATTCTTTTC
AAGATTAGGCACCATA
Found at i:1289072 original size:476 final size:476
Alignment explanation
Indices: 1288168--1292225 Score: 2568
Period size: 476 Copynumber: 8.5 Consensus size: 476
1288158 ACAATCCCTG
* * * * * *
1288168 GGATACATGATATTGACGTTTTGGTTACGCAAGAAAGGCATTTTTCCCTCCAATTTTTGTAATGT
1 GGATACATGATATTGATGTTTTGGTTTCACAAGAAAGGCATTTTTCCCACCAATTTTTATAAAGT
* * * *
1288233 ATAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATGATATTCACCCATTCTGTGATT
66 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATGATCTTCACTCATTTTGTGATT
* * * * * * * *
1288298 AGGCACCATGAACATATTCTCCTCATTAGGATAAATGATATTTATTATTTTCTTCTGCTTGGAAA
131 AGGCACTATAAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAA
* * * * * * *
1288363 TCTTTTCTTTCCCCTATTTTCCTTAAAATCAAAGTTCAT-ACCCTAACTATGAAAAGCTTCAATT
196 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCA-CTTAAATAAGACAAGCATCGATT
* * ** *
1288427 CTCGT-AGCAGTCTCTATT-TTTTCCAAGATTGGGAACCAAAAACACATTCATTTCATTAGAATA
260 CTCATGA-CAGTCTCCATTCTTTT-CAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATA
* * * * * * * *
1288490 CATGACCTTGTTGCTTTGGTGTCACAGGAAATGCTTTTCTTTCCGCCATTTTTTATAGAATCAAT
323 CATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAA
* * * *
1288555 GTTTGTCTCTTAAATAAGACAAATATGAATAGTCATACTAATCCCCATTCTTTTCAAGATTAGGA
388 GTTTATCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGC
*
1288620 ACCATAAACGTAGTCTTCTCATTA
453 ACCATAAACATAGTCTTCTCATTA
* ** ** * *
1288644 GGATATATGATATTGATACTTTGGTTTTGCAAGAAAGGCATTTCTCCCACCAATTTTTATAAAAT
1 GGATACATGATATTGATGTTTTGGTTTCACAAGAAAGGCATTTTTCCCACCAATTTTTATAAAGT
* *
1288709 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATGATATTTACTCATTTTGTGATT
66 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATGATCTTCACTCATTTTGTGATT
* * * *
1288774 AGGCATTGTAAACACATTCTCTTCATCAGGATAAATGATATAGATGATTTTCTTTTGCATGGAAA
131 AGGCACTATAAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAA
* * * ** *
1288839 TATTTTATTCT-CCCTAATTTCCTTAAAATTGAAGTTCATCACTTAAATAAGACAAGCATCTATT
196 TCTTTTCTT-TGCCCTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATT
* * **
1288903 CTTATGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATATG
260 CTCATGACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACA
*
1288968 TGACATTAAT-CTTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAG
325 TGACATTGATGC-TTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAG
* * * * * *
1289032 TTTATCTCTTCAGTTAGACAAACATGAATAAT-AGTACTAATCTCCA-TCTTTCTCTAGATTAGG
389 TTTATCTCTTAAATAAGACAAACATGAATACTCA-TACTAATCCCCATTCTTT-TCAAGATTAGG
* * *
1289095 CACTATAAACAGAGT-TATCCCATTA
452 CACCATAAACATAGTCT-TCTCATTA
* * *
1289120 GGATACACGATATTGATGTTTTGGTTTCACAAGAAAGGCATTTTTCCCTCCAATTTCTATAAAGT
1 GGATACATGATATTGATGTTTTGGTTTCACAAGAAAGGCATTTTTCCCACCAATTTTTATAAAGT
* *
1289185 CTAAGTTCGTGCCTCAAATGAGACAAACATGTATTCTACTAATGATCTTCGCTCATTTTGTGATT
66 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATGATCTTCACTCATTTTGTGATT
* * *
1289250 AAGCACTATAAATACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAA
131 AGGCACTATAAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAA
* * * *
1289315 TCTTTTTTTTGCCCAATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACATGCATCGATTC
196 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTC
* * * *
1289380 TCATAACAGTCTCTATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTA-TACGTGA
261 TCATGACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGA--T-A
*** ** * * * * * * * *** *
1289444 CATTGAACCAAAAACACATTT-CTTTTGCATGGAAATCTTTTCTTTGCC-CTATTTTCCTTAAAA
323 CA-TG-A-CATTGATGC-TTTGGTGTCGCAAGAAAAGCTTTTCTTT-CCACCATTTTTGATAGAA
* * * * * * *
1289507 TCAAAGTTTATCCCTTAAATAAGATAGACATCG-ATTCT-GTAAC-AGTCTCCATTCTTTTCAAG
383 TCAAAGTTTATCTCTTAAATAAGACAAACAT-GAATACTCAT-ACTAATCCCCATTCTTTTCAAG
* * * * * * *
1289569 ATTGGGAACCAAAAACACATTC-CCGTCATTG
446 ATTAGGCACCATAAACATAGTCTTC-TCATTA
* * * * * * *
1289600 GGATAAATGACATTGATGCTTTGGTGTCACAGGCAAA-GC--TTTTCCGTCAACCGATTTTGATA
1 GGATACATGATATTGATGTTTTGGTTTCACAAG-AAAGGCATTTTTCC--C-ACCAATTTTTATA
* * * * * * *
1289662 GAA-TCAAAGTAT-GT-CTATTAAATCAGACAAACATGAATACTCATACTAAT-CTC-T-ATTC-
62 -AAGTCTAAGT-TCGTGC-CTCAAATGAGACAAACATGGAT--TC-TACTAATGATCTTCACTCA
* ** * * * * * * *
1289720 TTCTCAGAATTAGGCACCATAAACATAGTCT-TCTCATTATGATATAGGATATTGATG-TTTTGG
121 TTTTGTG-ATTAGGCACTATAAACACATTCTCT-TCATTAGGATAAATGATATTGATGATTTT-C
* * * * * * * *
1289783 TTTCGCA-AGAAAGGCATTTT-TCT-CACTAATTTT--TGTAAAGTCTAAGTTCATGC-CTCAAA
183 TTTTGCATGGAAA-TC-TTTTCTTTGCCCT-ATTTTCCT-TAAAATCAAAGTTCAT-CACTTAAA
* * * * * * * * * *
1289842 TGAGACAAACATGGATTCTAAT-A-ATGATCTACACTCATTTT-ATGATTAGGCACTATAAAA-A
243 TAAGACAAGCATCGATTCTCATGACA-G-TCTCCATTC-TTTTCAAGATTGGGAACCA-AAAACA
* * * ** * * ** * * * * * * *
1289903 CATTCTCGTAATTAGGATA-ATTGATGTTGAGGATTTTCTTTTGCATGGAAATCTTTTCTTTGCT
304 CATTCCCTTCATTAGGATACA-TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA
* *** * * ** * * * *
1289967 CTATTTTCCTTACAATCAAAGTTCATAC-CTTAAATTTGA-AAAGCTTCG-ATTCTCATAATAGT
368 CCATTTTTGATAGAATCAAAGTTTAT-CTCTTAAATAAGACAAA-CAT-GAATACTCATACTAAT
* * ** * *
1290029 CTCCATTCTTTTCAAGATTTGAAAGCCA-AAACACATTC-TCTTCATTA
430 CCCCATTCTTTTCAAGATTAGGCA-CCATAAACATAGTCTTC-TCATTA
* * * * * *** *
1290076 TGG-CACATGACATTGATGCTTTT-GTGTT-ATAGGAAAAGC--TTTTCTGTCC-ATTATAATAT
1 -GGATACATGATATTGATG-TTTTGGT-TTCACAAGAAAGGCATTTTTCCCACCAATT-T-TTAT
* * * * ** *** *** * * * * *
1290135 ACAA-TATTGATGTT-TTG-GT--TTTGCAAGA-AAGGTTTTTTTCTCACCAAT-TTTTGTAAAG
61 A-AAGT-CT-AAGTTCGTGCCTCAAATG--AGACAAACATGGATTCT-ACTAATGATCT-T-CAC
* * * * ** * *
1290193 TCCAAGTTCTGCCTCAAATGAGACAAAC-ATGGATTCTACTATCGATCTACACTCATTTCATGAT
118 T-C-A-TTTTG--T--GATTAGGC--ACTAT--AAAC-AC-AT---TCT-C-TTCA-TT-AGGAT
* * ** * * * * * * * *
1290257 -TAGGCACTATAAACTCATTTTC-CTTGTC-TGGATAAATGGTATTCAAGATT-CTCT-TTTGCA
163 AAATG-A-TATTGA-TGATTTTCTTTTG-CATGG--AAAT-CTTTTC---TTTGCCCTATTTTCC
** ** * * * * * * * * * * *
1290317 TGGAAATC--TTTTCTTTGCCCTATTTTCCATTAA-ATCAAAC-T-TAATCCCATAAACAAGACA
218 TTAAAATCAAAGTTC-AT---C-A-CTT-AAATAAGA-CAAGCATCGATTCTCAT-GAC-AGTCT
** * ** * ***** **
1290377 AGAATCAATTC----TT-GTAA-CTGTCTC-CATTCTTTTCAAGATTAGGAACCAAAAACACATT
273 CCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTC---A-T------------------
* * * * **
1290435 CCCTTCATTAGGATACATGACAGTGATACTTTGGTGTCACAAGAAAAGCTTTTTTTTCCTTCATT
316 --------TAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATT
* * * *
1290500 TTTGATAGAATCAAAGTTTCTCTCTTAAATAAAACAAACAGGAATAGTCATACTAATCCCCATTC
373 TTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTC
* * * * *
1290565 TTTTTAGGATTAGGCACCATAAACGTAGCCTTTTCATTA
438 TTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTA
* * * * * *
1290604 TGATACACGATATTGATGTTTTGGTCTCACAAGAAAGACATTTTTCCCACCAATTTTTGTGAAGT
1 GGATACATGATATTGATGTTTTGGTTTCACAAGAAAGGCATTTTTCCCACCAATTTTTATAAAGT
* * * *
1290669 CTAAGTTCATGCCTTAAATGAGACAAACCT-GATTCTACTAAT-ATCTTCACTCATTTTATGATT
66 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATGATCTTCACTCATTTTGTGATT
* * *
1290732 AGG-ACTATAAACACATTCTCCTCATTAGGATAAATGATAATGATGATTTTCTTTTGCATGAAAA
131 AGGCACTATAAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAA
* * *
1290796 TCTTTTCTTTGCCTTATTTTCCTAAAAATCAAAGTTCATCACTTAAATAAGACAAGTATCGATTC
196 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTC
* * *
1290861 TCGTGACAGTCTCCATTCATTTAAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAT
261 TCATGACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAT
* * *
1290926 GACATTGATGCTTTGGTGT-GCAAGAAAAGCATTTCTTTCCACCATTTCTGATAGAATTAAAGTT
326 GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTT
* * * *
1290990 TCTCTCTTTAATAAGACAAACACGAATACTCATACTAATTCCCATTC-TTTC--G---A--CACC
391 TATCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACC
*
1291047 ATAAACATAGTCTTTTCATTA
456 ATAAACATAGTCTTCTCATTA
* * * *
1291068 TGATACATGACATTGATGCTTTGGTTTCACAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGT
1 GGATACATGATATTGATGTTTTGGTTTCACAAGAAAGGCATTTTTCCCACCAATTTTTATAAAGT
* * * * *
1291133 CTAAGTTCCTTCCTCAAATAAGACAAACATGGA-TCTAGTAATGATCTACACTCATTTTGTGATT
66 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATGATCTTCACTCATTTTGTGATT
* * * * ***
1291197 GGGCACTATAAACGCATTCT-TCTCATTAGGATAAATGATAATGATGATTTTCTTTAGCACAAAA
131 AGGCACTATAAACACATTCTCT-TCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAA
* * * * *
1291261 ATCCTTTCTTTGCCATATTTTCCTTAAAATCGAAA-TTCATCGCTTAAGTAGGACAAGCATCGAT
195 ATCTTTTCTTTGCCCTATTTTCCTTAAAATC-AAAGTTCATCACTTAAATAAGACAAGCATCGAT
* * *
1291325 TCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATGC
259 TCTCATGACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATAC
* * * * *
1291390 GTGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTACTTTCGA--TTGTTTTGATAGAATCAAA
324 ATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCAT-TTTTGATAGAATCAAA
*
1291453 G-------CTT--ATAAGACAAACATGAATACTTATAAC-AATCCCCATTCTTTTCAAGATTAGG
388 GTTTATCTCTTAAATAAGACAAACATGAATACTCAT-ACTAATCCCCATTCTTTTCAAGATTAGG
* * *
1291508 CACCATAAACAAAGTCTTTTCACTA
452 CACCATAAACATAGTCTTCTCATTA
* * * * *
1291533 GGCTACATGATATTGATGTTTTGGTTACACAAGAAAGGCATTTTTCCCCCCAATTTTTGTAATGT
1 GGATACATGATATTGATGTTTTGGTTTCACAAGAAAGGCATTTTTCCCACCAATTTTTATAAAGT
* * **
1291598 CTAAGTTCATGCCTCAAATGAGACACACATGGATTCTACTAATGATCTTCACTCATCCTGTGATT
66 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATGATCTTCACTCATTTTGTGATT
* ** * * * *
1291663 AGGCACTATAAACACATTTTCCGCATTAGGATAAATGGTATTTATGATTTTCTTTTGCTTGAAAA
131 AGGCACTATAAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAA
1291728 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTC
196 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTC
* * * * * * * *
1291793 CCGA-GATAGTCTCCACTCCTTTCAAGATTGAGAACGAAAAACACATTCCTTTCATTAGGATACG
261 TC-ATGACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACA
* * * *
1291857 TGACATTGATGCTTTGGTGCCGCAAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATTAAAGT
325 TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGT
* * * * * *
1291922 TTGTCTCTTCAATAAGACAAACATGAATACTCATATTAATCACCATTCTTTTTAGGATTAGGCAC
390 TTATCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCAC
* *
1291987 CATAAACATAGTCTTCTGACTA
455 CATAAACATAGTCTTCTCATTA
* ** * * *
1292009 GGATACACGATATTGATGTTTTGGTTTTGCAAGAAAAGCTTTTTTCTCACCAATTTTTGA-AAAG
1 GGATACATGATATTGATGTTTTGGTTTCACAAGAAAGGCATTTTTCCCACCAATTTTT-ATAAAG
* * * *
1292073 -CTTAAGTTCGTGCCTTAAATGAGACAAACATAGATTCTA-AAATGATCTACACTCATTTTGTGA
65 TC-TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATGATCTTCACTCATTTTGTGA
* * *
1292136 TTAGGCACTATAAACACATTCT-TGTAATTAGGATAATTGATATTGAGGATTTTCTTTTGCATGG
129 TTAGGCACTATAAACACATTCTCT-TCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGG
1292200 AAATCTTTTCTTTGCCCTATTTTCCT
193 AAATCTTTTCTTTGCCCTATTTTCCT
1292226 CAAAGTTCAT
Statistics
Matches: 2781, Mismatches: 581, Indels: 441
0.73 0.15 0.12
Matches are distributed among these distances:
457 31 0.01
458 6 0.00
459 3 0.00
460 1 0.00
463 1 0.00
464 115 0.04
465 137 0.05
466 430 0.15
467 38 0.01
468 1 0.00
469 1 0.00
470 1 0.00
471 11 0.00
472 84 0.03
473 35 0.01
474 19 0.01
475 186 0.07
476 889 0.32
477 21 0.01
478 9 0.00
479 11 0.00
480 140 0.05
481 170 0.06
482 20 0.01
483 6 0.00
484 9 0.00
485 2 0.00
486 1 0.00
487 1 0.00
490 3 0.00
492 3 0.00
493 6 0.00
494 6 0.00
495 6 0.00
496 19 0.01
497 13 0.00
498 19 0.01
499 8 0.00
500 11 0.00
501 22 0.01
502 8 0.00
503 20 0.01
504 13 0.00
505 22 0.01
506 6 0.00
507 5 0.00
508 4 0.00
509 1 0.00
510 3 0.00
513 2 0.00
514 2 0.00
515 2 0.00
516 2 0.00
517 2 0.00
519 4 0.00
521 1 0.00
523 3 0.00
524 1 0.00
525 1 0.00
526 2 0.00
527 16 0.01
528 134 0.05
529 16 0.01
530 11 0.00
531 5 0.00
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.36
Consensus pattern (476 bp):
GGATACATGATATTGATGTTTTGGTTTCACAAGAAAGGCATTTTTCCCACCAATTTTTATAAAGT
CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATGATCTTCACTCATTTTGTGATT
AGGCACTATAAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAA
TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTC
TCATGACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAT
GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTT
TATCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACC
ATAAACATAGTCTTCTCATTA
Found at i:1294547 original size:20 final size:20
Alignment explanation
Indices: 1294522--1294589 Score: 87
Period size: 20 Copynumber: 3.8 Consensus size: 20
1294512 TTACAAGCCA
1294522 ATGTATCGATACATTTTAGG
1 ATGTATCGATACATTTTAGG
1294542 ATGTATCGATACA---T---
1 ATGTATCGATACATTTTAGG
1294556 -TGTATCGATACATTTTAGG
1 ATGTATCGATACATTTTAGG
1294575 ATGTATCGATACATT
1 ATGTATCGATACATT
1294590 GTATCGATAC
Statistics
Matches: 41, Mismatches: 0, Indels: 14
0.75 0.00 0.25
Matches are distributed among these distances:
13 12 0.29
16 1 0.02
17 1 0.02
20 27 0.66
ACGTcount: A:0.31, C:0.12, G:0.18, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTTTAGG
Found at i:1294561 original size:13 final size:13
Alignment explanation
Indices: 1294543--1294601 Score: 58
Period size: 13 Copynumber: 5.0 Consensus size: 13
1294533 CATTTTAGGA
1294543 TGTATCGATACAT
1 TGTATCGATACAT
1294556 TGTATCGATACAT
1 TGTATCGATACAT
**
1294569 T-T-T--A-GGA-
1 TGTATCGATACAT
1294576 TGTATCGATACAT
1 TGTATCGATACAT
1294589 TGTATCGATACAT
1 TGTATCGATACAT
1294602 CTTGTGTGTA
Statistics
Matches: 36, Mismatches: 4, Indels: 12
0.69 0.08 0.23
Matches are distributed among these distances:
7 1 0.03
8 2 0.06
9 2 0.06
11 2 0.06
12 2 0.06
13 27 0.75
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.39
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1294565 original size:33 final size:33
Alignment explanation
Indices: 1294523--1294619 Score: 162
Period size: 33 Copynumber: 3.0 Consensus size: 33
1294513 TACAAGCCAA
1294523 TGTATCGATACATTTTAGGATGTATCGATACAT
1 TGTATCGATACATTTTAGGATGTATCGATACAT
1294556 TGTATCGATACATTTTAGGATGTATCGATACAT
1 TGTATCGATACATTTTAGGATGTATCGATACAT
*
1294589 TGTATCGATACATCTT-GTG-TGTATCGATACA
1 TGTATCGATACATTTTAG-GATGTATCGATACA
1294620 AACAGTTAAG
Statistics
Matches: 62, Mismatches: 1, Indels: 3
0.94 0.02 0.05
Matches are distributed among these distances:
32 13 0.21
33 49 0.79
ACGTcount: A:0.29, C:0.13, G:0.19, T:0.39
Consensus pattern (33 bp):
TGTATCGATACATTTTAGGATGTATCGATACAT
Found at i:1294719 original size:13 final size:13
Alignment explanation
Indices: 1294701--1294725 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1294691 ACATTTGGTC
1294701 ATGTATCGATACA
1 ATGTATCGATACA
1294714 ATGTATCGATAC
1 ATGTATCGATAC
1294726 TGTGCATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1294790 original size:52 final size:53
Alignment explanation
Indices: 1294683--1294818 Score: 220
Period size: 52 Copynumber: 2.6 Consensus size: 53
1294673 TTCTTAACAA
**** *
1294683 GTATCGATACATTTGGTCATGTATCGATACAATGTATCGATACTGTGCATTAT
1 GTATCGATACATTTGAAGGTGTATCGATACAATGTATCAATACTGTGCATTAT
1294736 GTATCGATACATTTGAAGGTGTATCGATA-AATGTATCAATACTGTGCATTAT
1 GTATCGATACATTTGAAGGTGTATCGATACAATGTATCAATACTGTGCATTAT
1294788 GTATCGATACATTTGAAGGTGTATCGATACA
1 GTATCGATACATTTGAAGGTGTATCGATACA
1294819 TTTCAGGGTT
Statistics
Matches: 77, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
52 51 0.66
53 26 0.34
ACGTcount: A:0.31, C:0.13, G:0.20, T:0.36
Consensus pattern (53 bp):
GTATCGATACATTTGAAGGTGTATCGATACAATGTATCAATACTGTGCATTAT
Found at i:1296769 original size:158 final size:156
Alignment explanation
Indices: 1296549--1297249 Score: 376
Period size: 158 Copynumber: 4.4 Consensus size: 156
1296539 ATTGGTGGGT
* * * * * *
1296549 AAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGAGGCATCCTTATGAGAAGACAA--TGTTT
1 AAAAAGCATTTCTTG-CAAACCAAAGCATCAATATCATGTATCCTAATGAG--GA-AATGTGTTT
* *
1296612 GTGGTGCCTAATCCAGAAAAGAATGGGAATAGTATGAGCATTTATGTTTGTCTTATTTAAAAAAC
62 ATGGTGCCTAATCCAGAAAAGAATGGGAATAGTATGAGAATTTATGTTTGTCTTATTTAAAAAAC
1296677 AAACTTTGATGCTATT-AAAAATGGTGTAAG
127 AAACTTTGATGCT-TTAAAAAATGGTGTAAG
* * * * *
1296707 GAAAAGCTTTTCTTGCAACATCAAAGCATCAATGTCATGTATCCTAATGAAGGAAATGTGTTTTT
1 AAAAAGCATTTCTTGCAA-ACCAAAGCATCAATATCATGTATCCTAATG-AGGAAATGTGTTTAT
* * ** * * * * * * *** * *
1296772 GGTTCCCAATCTTGAAAAAGAATGGAGACTATTAGGGGAATTGATGCTTG-CTTATTTTCGAGAT
64 GGTGCCTAATCCAG-AAAAGAATGG-GAATAGTATGAGAATTTATGTTTGTCTTATTTAAAAAAC
* * *
1296836 AAACTTTGAT--TTTGAGGAAAATGGGGCAA-
127 AAACTTTGATGCTTT-A-AAAAATGGTGTAAG
* ** * * * *
1296865 AGAAAAG-ATTTCAATGCCAAATAAAATCATTAATATCGTTTATCCTAATGAGGAGAATGTGTTT
1 A-AAAAGCATTTC-TTG-CAAACCAAAGCATCAATATCATGTATCCTAATGAGGA-AATGTGTTT
* ** * ** * * * * **
1296929 ATTGTGAATAAT-CACCAAAAGAATGAAAATCAATACT-AGAATCTATGTTTGTCTCATTTTAGG
62 ATGGTGCCTAATCCA-GAAAAGAATGGGAAT-AGTA-TGAGAATTTATGTTTGTCTTATTTAAAA
* *
1296992 CACGAA-TTT-A-GACTTTACAAAAATTGGTGT--G
124 AACAAACTTTGATG-CTTTA-AAAAA-TGGTGTAAG
* * * * *
1297023 TAAAAAGAATTTCTTGCGAAACCAAAGCATCAATATAAGGTATCCTAATGA-GAAGACTATGTTC
1 -AAAAAGCATTTCTTGC-AAACCAAAGCATCAATATCATGTATCCTAATGAGGAA-A-TGTGTTT
* * * *
1297087 ACGGTGCCTAATCCAGAAAAGAATGGGGATTAGTATGAGCATTTATGTTTGTCTTATATAAAAAA
62 ATGGTGCCTAATCCAGAAAAGAAT-GGGAATAGTATGAGAATTTATGTTTGTCTTATTTAAAAAA
* *
1297152 CAAACTTTGATTCTATT-AAAAATGGTGGAA-
126 CAAACTTTGATGCT-TTAAAAAATGGTGTAAG
* * * ** * * *
1297182 AAAAAGCTTTTCTTGCGACACCAAAGTATCAATGGCAAGTATCCTAATGAAGGGAATGTGTTTTT
1 AAAAAGCATTTCTTGC-AAACCAAAGCATCAATATCATGTATCCTAATG-AGGAAATGTGTTTAT
1297247 GGT
64 GGT
1297250 TCCCAATCTT
Statistics
Matches: 395, Mismatches: 110, Indels: 76
0.68 0.19 0.13
Matches are distributed among these distances:
156 5 0.01
157 13 0.03
158 224 0.57
159 126 0.32
160 25 0.06
161 2 0.01
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (156 bp):
AAAAAGCATTTCTTGCAAACCAAAGCATCAATATCATGTATCCTAATGAGGAAATGTGTTTATGG
TGCCTAATCCAGAAAAGAATGGGAATAGTATGAGAATTTATGTTTGTCTTATTTAAAAAACAAAC
TTTGATGCTTTAAAAAATGGTGTAAG
Found at i:1296909 original size:475 final size:476
Alignment explanation
Indices: 1295210--1297470 Score: 2921
Period size: 476 Copynumber: 4.7 Consensus size: 476
1295200 GTTGTCATCA
* * * *
1295210 ATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTTATACTATCAAAAATGGTGG
1 ATTAGTATGAGCATTCATGTTTGTCTTATTTAAGAAACAAACTTTGATTCTATCAAAAATGGTGG
* * * *
1295275 AAAGAAAAGCATTTGTTGCAACACCAAAGCATCAATGTCATGTTTCTTAATGAAGGGAATGTGTT
66 AAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTT
* * * * * * *
1295340 TTCGCTTCCGAATCTTGAAAAGAATGGAGACTGTTGCGAGAATCGATGCTTGTTTCTATTTAAGG
131 TTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGTCT-TATTTAAGG
* * * * *
1295405 GATGAACTTTTATTTTAAAGAAAATAGGGCAAAGAGAAGATTTTC-ATGTAAAAGAAAATCCTCA
195 GATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA-TTTCAATGCAAAAGAAAATCATCA
* *
1295469 ATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCTTAATCATC-AAATTAATGAAGATCA
259 ATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA-CAAAATGAATGAAGATCA
* *
1295533 TTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAGCTTAGACTTTACAAAAATTGGTGGGTAA
323 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGTAA
* * ** *
1295598 AACGCATTTCTTGTGAAACCAAAGCATCAATATGAGGTATTGTAACGAGAAGACTATGTTTATGG
388 AAAGCATTTCTTGCGAAACCAAAGCATCAATATGAGGTATCCTAATGAGAAGACTATGTTTATGG
* *
1295663 TGCTTAATCCGGAAAAGAATGGGG
453 TGCCTAATCCAGAAAAGAATGGGG
* * * * *
1295687 ATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAAACAATCTTTGATTTTATAAAAAACGGTGG
1 ATTAGTATGAGCATTCATGTTTGTCTTATTTAAGAAACAAACTTTGATTCTATCAAAAATGGTGG
* * *
1295752 AAAGAAAAGCGTTTCTTTCAACA-CAGAAGCATCAAATGTCATGTATCCTAACGAAGGGAATGTG
66 AAAGAAAAGCTTTTCTTGCAACACCA-AAGCATC-AATGTCATGTATCCTAATGAAGGGAATGTG
* * * * * *
1295816 -TTTTGCCTTCCCAATCTTGAAAATAATGGGGACTGTTACAAGAATCAATGCTTGTCTTATATAA
129 TTTTTG-GTTCCCAATCTTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGTCTTATTTAA
* *
1295880 GGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAAAAAAGATTTCCAA-GCAAAAGAAAATCAT
193 GGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT-CAATGCAAAAGAAAATCAT
* * * * * *
1295944 CGACATCATTTATCGTAATGAGGAGAATGTGTTTATTGTGCCTAATCACCAAATGAATGAAGATT
257 CAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATC
* * *
1296009 ATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTTCAAAAATTGGTGGGTT
322 ATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGTA
* * * *
1296074 AAAAGCCTTTCTTGCGAAGCTAAAGCATCAATCTGAGGTATCCTAATGAGAAGACTATGTTTATG
387 AAAAGCATTTCTTGCGAAACCAAAGCATCAATATGAGGTATCCTAATGAGAAGACTATGTTTATG
* * *
1296139 GTGCCTAATTCGGAAAAGAATGAGG
452 GTGCCTAATCCAGAAAAGAATGGGG
* ***
1296164 ATTAGTATGA-CTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAACCAGTG
1 ATTAGTATGAGC-ATTCATGTTTGTCTTATTTAAGAAACAAACTTTGATTCTATCAAAAATGGTG
* * *
1296228 GAAGGAAAAGCTTTTCTTGCAACACCAAAGCATTAATGTCATGTATCCTAATGAAGGGAATGAG-
65 GAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGT
* * * *
1296292 TTTTGGCTTCCCAATCCTGAAAATAATAGAGAC-AGTTACTAGAATCGATGCTTGTCTTATTTAA
130 TTTTGG-TTCCCAATCTTGAAAAGAATGGAGACTA-TTACAAGAATCGATGCTTGTCTTATTTAA
* * * *
1296356 GGGATGAACTTTGCTTTTAAGGAAAATAGGGCAAAGAAAAGATTACCATGCAAAACAAAATCATC
193 GGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCATC
* * * *
1296421 AATATCATTTATCCTATTAAGGAGGATGTGTTTATAGTGCCTAATCAAAAAATGAATGAAGATCA
258 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* * * * * *
1296486 TTACTAAAATCCGTATTTGTCTTATTTGAGGCATGAACTTTA-ACCTTACAAAAATTGGTGGGTA
323 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAAC-TTAGACTTTACAAAAATTGGTGGGTA
* * * * * *
1296550 AAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGAGGCATCCTTATGAGAAGACAATGTTTGTG
387 AAAAGCATTTCTTGCGAAACCAAAGCATCAATATGAGGTATCCTAATGAGAAGACTATGTTTATG
1296615 GTGCCTAATCCAGAAAAGAAT-GGG
452 GTGCCTAATCCAGAAAAGAATGGGG
* * * * * *
1296639 AATAGTATGAGCATTTATGTTTGTCTTATTTAAAAAACAAACTTTGATGCTATTAAAAATGGTGT
1 ATTAGTATGAGCATTCATGTTTGTCTTATTTAAGAAACAAACTTTGATTCTATCAAAAATGGTGG
* * *
1296704 AAGGAAAAGCTTTTCTTGCAACATCAAAGCATCAATGTCATGTATCCTAATGAAGGAAATGTGTT
66 AAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTT
*** * ** *
1296769 TTTGGTTCCCAATCTTGAAAAAGAATGGAGACTATTAGGGGAATTGATGCTTG-CTTATTTTCGA
131 TTTGGTTCCCAATCTTG-AAAAGAATGGAGACTATTACAAGAATCGATGCTTGTCTTATTTAAGG
* * * * * *
1296833 GATAAACTTTGATTTTGAGGAAAATGGGGCAAAGAAAAGATTTCAATGCCAAATAAAATCATTAA
195 GATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCATCAA
* * ** * *
1296898 TATCGTTTATCCTAATGAGGAGAATGTGTTTATTGTGAATAATCACCAAAA-GAATGAAAATCAA
260 TATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA-CAAAATGAATGAAGATCAT
* * * *
1296962 TACTAGAATCTATGTTTGTCTCATTTTAGGCACGAATTTAGACTTTACAAAAATTGGTGTGTAAA
324 TACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGTAAA
* * * *
1297027 AAGAATTTCTTGCGAAACCAAAGCATCAATATAAGGTATCCTAATGAGAAGACTATGTTCACGGT
389 AAGCATTTCTTGCGAAACCAAAGCATCAATATGAGGTATCCTAATGAGAAGACTATGTTTATGGT
1297092 GCCTAATCCAGAAAAGAATGGGG
454 GCCTAATCCAGAAAAGAATGGGG
* * * *
1297115 ATTAGTATGAGCATTTATGTTTGTCTTATATAAAAAACAAACTTTGATTCTATTAAAAATGGTGG
1 ATTAGTATGAGCATTCATGTTTGTCTTATTTAAGAAACAAACTTTGATTCTATCAAAAATGGTGG
* * * *
1297180 AAA-AAAAGCTTTTCTTGCGACACCAAAGTATCAATGGCAAGTATCCTAATGAAGGGAATGTGTT
66 AAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTT
* * *
1297244 TTTGGTTCCCAATCTTGAAAAGAGTGGAAACTATTACAATAATCGATGCTTGTCTTATTTAAGGG
131 TTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGTCTTATTTAAGGG
* *
1297309 ATGAACATTGATTTCAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCTAAACA-AAAATCATCA
196 ATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGC-AAA-AGAAAATCATCA
* ** * * *
1297373 ATATCATTTTTTTTAATGAGGAGAATGTGTTTATAGCGCCTAATCACAAAATGAATGAAGACCCT
259 ATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAT
* * *
1297438 TACTAGAATCAATGCTTGTCTCATTTGTGGCAC
324 TACTAGAATCCATGTTTGTCTCATTTGAGGCAC
1297471 TTTAAGGTCA
Statistics
Matches: 1544, Mismatches: 217, Indels: 47
0.85 0.12 0.03
Matches are distributed among these distances:
474 31 0.02
475 494 0.32
476 517 0.33
477 428 0.28
478 74 0.05
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.31
Consensus pattern (476 bp):
ATTAGTATGAGCATTCATGTTTGTCTTATTTAAGAAACAAACTTTGATTCTATCAAAAATGGTGG
AAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTT
TTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGTCTTATTTAAGGG
ATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCATCAAT
ATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
CTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGTAAAAA
GCATTTCTTGCGAAACCAAAGCATCAATATGAGGTATCCTAATGAGAAGACTATGTTTATGGTGC
CTAATCCAGAAAAGAATGGGG
Found at i:1298349 original size:33 final size:32
Alignment explanation
Indices: 1298286--1298350 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 32
1298276 ACAATTCACT
* * *
1298286 ATGTATCAATACCAAGAACATGTATTGATACA
1 ATGTATCAATACAAAGAAAATGTATCGATACA
*
1298318 ATGTATCGATACAAAGCAAAATGTATCGATACA
1 ATGTATCAATACAAAG-AAAATGTATCGATACA
1298351 TCTAGGTGTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
32 14 0.50
33 14 0.50
ACGTcount: A:0.45, C:0.15, G:0.14, T:0.26
Consensus pattern (32 bp):
ATGTATCAATACAAAGAAAATGTATCGATACA
Found at i:1299018 original size:25 final size:25
Alignment explanation
Indices: 1298988--1299047 Score: 84
Period size: 25 Copynumber: 2.4 Consensus size: 25
1298978 ATAAAACTCT
1298988 CCCTTAATAAAATTTTTCTTTCTCC
1 CCCTTAATAAAATTTTTCTTTCTCC
* *
1299013 CCCTTAGTAAGATTTTTCTTTCTCC
1 CCCTTAATAAAATTTTTCTTTCTCC
**
1299038 CTTTTAATAA
1 CCCTTAATAA
1299048 TAAATTTAAC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.23, C:0.25, G:0.03, T:0.48
Consensus pattern (25 bp):
CCCTTAATAAAATTTTTCTTTCTCC
Found at i:1304260 original size:12 final size:11
Alignment explanation
Indices: 1304238--1304313 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
1304228 AGAGAAAGAA
*
1304238 GAGAGAGGAGG
1 GAGATAGGAGG
1304249 GATGATAGGAGG
1 GA-GATAGGAGG
*
1304261 AGAGACAGGA--
1 -GAGATAGGAGG
*
1304271 GAGATAGTA--
1 GAGATAGGAGG
1304280 GAGATAGGAGG
1 GAGATAGGAGG
1304291 GATGATAGGAGG
1 GA-GATAGGAGG
*
1304303 AGAGACAGGAG
1 -GAGATAGGAG
1304314 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:1304270 original size:24 final size:24
Alignment explanation
Indices: 1304237--1304322 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
1304227 AAGAGAAAGA
*
1304237 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
1304261 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
1304279 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
1304303 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
1304323 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:1304289 original size:42 final size:42
Alignment explanation
Indices: 1304228--1304346 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
1304218 TAGCCCTCAA
* *
1304228 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
1304270 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* * *
1304312 AGAGATAATAGAGAGAGGAGGGATGACAGAAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
1304347 GAGAGAAGAA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.44, C:0.03, G:0.45, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:1313331 original size:18 final size:19
Alignment explanation
Indices: 1313308--1313348 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
1313298 TTTCAATAAT
**
1313308 TTTTAA-TTTATTTTCTTC
1 TTTTAATTTTATGATCTTC
1313326 TTTTAATTTTATGATCTTC
1 TTTTAATTTTATGATCTTC
1313345 TTTT
1 TTTT
1313349 TATGCTTTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.17, C:0.10, G:0.02, T:0.71
Consensus pattern (19 bp):
TTTTAATTTTATGATCTTC
Found at i:1319431 original size:42 final size:42
Alignment explanation
Indices: 1319384--1319502 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
1319374 TTCTTCTTTC
* *
1319384 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
1319426 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* * *
1319468 CTCCTCCTATCATCTCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
1319503 TTGAGGGCTA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.08, C:0.45, G:0.03, T:0.44
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:1319444 original size:24 final size:24
Alignment explanation
Indices: 1319408--1319493 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
1319398 CCTCCTCTCT
*
1319408 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCTCTCCTGTCTCTCCTC
* * *
1319432 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCTCTCCTGTCTCTCCTC
1319453 C--T-ATCTCTCCTGTCTCTCCTC
1 CTATCATCTCTCCTGTCTCTCCTC
*
1319474 CTATCATCTCTCCTCTCTCT
1 CTATCATCTCTCCTGTCTCT
1319494 TCTTTCTCTT
Statistics
Matches: 48, Mismatches: 8, Indels: 12
0.71 0.12 0.18
Matches are distributed among these distances:
18 7 0.15
19 1 0.02
20 4 0.08
21 6 0.12
22 4 0.08
23 1 0.02
24 25 0.52
ACGTcount: A:0.10, C:0.44, G:0.02, T:0.43
Consensus pattern (24 bp):
CTATCATCTCTCCTGTCTCTCCTC
Found at i:1319468 original size:18 final size:18
Alignment explanation
Indices: 1319399--1319469 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
1319389 CCTGTCATCC
* *
1319399 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
1319417 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
1319439 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
1319459 CTCCTGTCTCT
1 CTCCTGTCTCT
1319470 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:1322083 original size:20 final size:20
Alignment explanation
Indices: 1322058--1322111 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
1322048 GTTAGAAGCA
* *
1322058 ATGTATCAATACAAT-TCATC
1 ATGTATCGATACAATGT-ACC
1322078 ATGTATCGATACAATGTACC
1 ATGTATCGATACAATGTACC
1322098 ATGTATCGATACAA
1 ATGTATCGATACAA
1322112 ATAGTGGTAG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 30 0.97
21 1 0.03
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.31
Consensus pattern (20 bp):
ATGTATCGATACAATGTACC
Found at i:1322184 original size:19 final size:20
Alignment explanation
Indices: 1322140--1322193 Score: 83
Period size: 19 Copynumber: 2.8 Consensus size: 20
1322130 TTGGCAGTTT
**
1322140 CATGTATCGATACAATTGTC
1 CATGTATCGATACAATTGAA
1322160 CATGTATCGATACAA-TGAA
1 CATGTATCGATACAATTGAA
1322179 CATGTATCGATACAA
1 CATGTATCGATACAA
1322194 AACATAATGT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 17 0.53
20 15 0.47
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.30
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:1327646 original size:472 final size:472
Alignment explanation
Indices: 1326623--1327972 Score: 1762
Period size: 472 Copynumber: 2.8 Consensus size: 472
1326613 TTCGGGAGTA
* * * * *
1326623 AAAAAGCCTTTCTTACAAAACCAAAGCATCAATATGCA-GTATCTTAACGAGAAGACTATATTTA
1 AAAAAGCCTTTCTTGCAAAACCAAAGCATCAATAT-AAGGTATCCTAATGAGAAGACTATGTTTA
* * * *
1326687 TGGTGCCTAATCCTAGGAAGAAT-GAGGATTAGTATGAGTATTCT-TATTTGTCTTATTTAAGAG
65 TGGTGCCTAAT-CTAGAAAGAATAG-GGATTAGTAAGAGTATT-TATGTTTGTCTTATTTAAGAA
* * *
1326750 ACAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAAGCATTTCATACAACACCAAAACATCGAT
127 ACAAACTTTGATTCTATCAAAAAAAGTGGAAAGAAAAGCATTTCATATAACACCAAAGCATCGAT
*
1326815 GTCATGTATCCAAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAAAATGGAGACTATTA
192 GTCATGTATCCAAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTA
*
1326880 CGAGAATCGATGCTTGTCTTATTTAAAGGATGAACTCTGATTTTAGTGAAGATAGGGCAAAGAAA
257 CGAGAATCGATGCTTGTCTTATTT-AAGG--GAACTCTGATTTTAATGAAGATAGGGCAAAGAAA
* * ** * * *
1326945 AGATTGCAATGTAAAAGAAAGTCATCAATATCATTTATACTAATGAGGAAAACGTGTTTATACAG
319 AGATTTCAATGCAAAAGAAAGTCATCAATAGAATTTATACCAATGAAGAAAACGTGTGTATACAG
* * *
1327010 CCTAATCACAAAATTAATGAAGATCACTACTAGAATCCATGTTTGTCATATTTGAGGCACGAACT
384 CCTAATCACAAAATGAATAAAGATCACTACTAGAATCCATGTCTGTCATATTTGAGGCACGAACT
* * *
1327075 TAGACTTTTCAAAAATTTATGGGT
449 TAGACTTTACAAAAAGTGATGGGT
* *
1327099 AAAAAGCCTTTCTTGCAAAACTAAAGCATCAATATGAGGTATCCTAATGAGAAGACTATGTTTAT
1 AAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATAAGGTATCCTAATGAGAAGACTATGTTTAT
* *
1327164 GGTGCCTAATCTAGAAAATAATAGGGATTACTAAGAGTATTTATGTTTGTCTTATTTAAGAAACA
66 GGTGCCTAATCTAG-AAAGAATAGGGATTAGTAAGAGTATTTATGTTTGTCTTATTTAAGAAACA
* * * *
1327229 AACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTATAACACCGAAGCATCGATGTC
130 AACTTTGATTCTATCAAAAAAAGTGGAAAGAAAAGCATTTCATATAACACCAAAGCATCGATGTC
* * * * * * * *
1327294 ATGTATCCTAATCAATGGAAAGTATTTTGGCTTCCCAATTTTGAAAAGAATGGAGACTGTTACAA
195 ATGTATCCAAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTACGA
* * * * * * * *
1327359 GAAACAATGCTTGTCTTATTTAA-GGAACTTTCATTTTAAAGAAAATAAGGCAAAGAAAAAATTT
260 GAATCGATGCTTGTCTTATTTAAGGGAACTCTGATTTTAATGAAGATAGGGCAAAGAAAAGA-TT
* * * * **
1327423 TCAA-GCAAAAGAAAATCATCAATAGAATTTATCCCAATGAAGAGAATGTGTGTATAGTGCCTAA
324 TCAATGCAAAAGAAAGTCATCAATAGAATTTATACCAATGAAGAAAACGTGTGTATACAGCCTAA
* * * * *
1327487 TTACCAAATGAATAAAGATCATTATTAGAATCCATGTCTGTC-TCATTTGATGCACGAACTTAGA
389 TCACAAAATGAATAAAGATCACTACTAGAATCCATGTCTGTCAT-ATTTGAGGCACGAACTTAGA
1327551 CTTTACAAAAAGTGATGGGT
453 CTTTACAAAAAGTGATGGGT
** *
1327571 AAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATAAGGTATCCAAATGAGAAGACTATGTTTAT
1 AAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATAAGGTATCCTAATGAGAAGACTATGTTTAT
* * * * *
1327636 GGTGCCTAATCCAGGAAAGAATAAGTATTAGTAAGAGTATTCATGTTTGTCTTTTTTAAGAAACA
66 GGTGCCTAATCTA-GAAAGAATAGGGATTAGTAAGAGTATTTATGTTTGTCTTATTTAAGAAACA
* * *
1327701 AACTTTGATTTTATCAAAAAAAAGTGGAAAGAAAAGCATTTCATGTAACACCAAAGCATCAATGT
130 AACTTTGATTCTATC-AAAAAAAGTGGAAAGAAAAGCATTTCATATAACACCAAAGCATCGATGT
*
1327766 CATGTATCCAAATGAAGGGAATGTGTTTTGGCCTCCCAATCTTGAAAAGAATGGAGACTATTACG
194 CATGTATCCAAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTACG
*
1327831 AGAATCGATACTTGTCTTATTTAAGGGATAAACTCTGATTTTAATGAAGATAGGGCAAAGAAAAG
259 AGAATCGATGCTTGTCTTATTTAAGGG---AACTCTGATTTTAATGAAGATAGGGCAAAGAAAAG
** * * *
1327896 ATTTCAATGCAAAAGAAAGTCATCAATATTATTTACACCAAT-AAGGAGAACGTGTTTATACTA-
321 ATTTCAATGCAAAAGAAAGTCATCAATAGAATTTATACCAATGAA-GAAAACGTGTGTATAC-AG
*
1327959 TCTAATCACAAAAT
384 CCTAATCACAAAAT
1327973 AATTTGTGGG
Statistics
Matches: 750, Mismatches: 109, Indels: 29
0.84 0.12 0.03
Matches are distributed among these distances:
471 1 0.00
472 279 0.37
473 126 0.17
474 3 0.00
475 8 0.01
476 249 0.33
477 84 0.11
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (472 bp):
AAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATAAGGTATCCTAATGAGAAGACTATGTTTAT
GGTGCCTAATCTAGAAAGAATAGGGATTAGTAAGAGTATTTATGTTTGTCTTATTTAAGAAACAA
ACTTTGATTCTATCAAAAAAAGTGGAAAGAAAAGCATTTCATATAACACCAAAGCATCGATGTCA
TGTATCCAAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTACGAG
AATCGATGCTTGTCTTATTTAAGGGAACTCTGATTTTAATGAAGATAGGGCAAAGAAAAGATTTC
AATGCAAAAGAAAGTCATCAATAGAATTTATACCAATGAAGAAAACGTGTGTATACAGCCTAATC
ACAAAATGAATAAAGATCACTACTAGAATCCATGTCTGTCATATTTGAGGCACGAACTTAGACTT
TACAAAAAGTGATGGGT
Found at i:1328810 original size:889 final size:885
Alignment explanation
Indices: 1327088--1328819 Score: 2643
Period size: 889 Copynumber: 2.0 Consensus size: 885
1327078 ACTTTTCAAA
* *
1327088 AATTTATGGGTAAAAAGCCTTTCTTGCAAAACTAAAGCATCAATATGAGGTATCCTAATGAGAAG
1 AATTTATGGGTAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGAGATATCCTAATGAGAAG
*
1327153 ACTATGTTTATGGTGCCTAATCTAGAAAATAATAGGGATTACTAAGAGTATTTATGTTTGTCTTA
66 ACTATGTTTATGGTGCCTAATCTAGAAAAAAATAGGGATTACTAAGAGTATTTATGTTTGTCTTA
*
1327218 TTTAAGAAACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTATAACACCGAA
131 TTTAAGAAACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTACAACACCGAA
* * * *
1327283 GCATCGATGTCATGTATCCTAATCAATGGAAAGTATTTTGGCTTCCCAATTTTGAAAAGAATGGA
196 GCATCAATGCCATGTATCCTAATCAATGGAAAGTAGTTTGGCTTCCCAATCTTGAAAAGAATGGA
1327348 GACTGTTACAAGAAACAATGCTTGTCTTATTTAAGGAACTTTCATTTTAAAGAAAATAAGGCAAA
261 GACTGTTACAAGAAACAATGCTTGTCTTATTTAAGGAACTTTCATTTTAAAGAAAATAAGGCAAA
*
1327413 GAAAAAATTTTCAAGCAAAAGAAAATCATCAATAGAATTTATCCCAATGAAGAGAATGTGTGTAT
326 GAAAAAATTTTCAAGCAAAAGAAAATCATCAATAGAACTTATCCCAATGAAGAGAATGTGTGTAT
* *
1327478 AGTGCCTAATTACCAAATGAATAAAGATCATTATTAGAATCCATGTCTGTCTCATTTGATGCACG
391 AGTGCCTAATCACCAAATGAATAAAGATCATTACTAGAATCCATGTCTGTCTCATTTGATGCACG
*
1327543 AACTTAGACTTTACAAAAAGTGATGGGTAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATAA
456 AACTTAGACTTTACAAAAAGTGATGGGTAAAAAGCCTTTCTTATGAAACCAAAGCATCAATATAA
* * * *
1327608 GGTATCCAAATGAGAAGACTATGTTTATGGTGCCTAATCCAGGAAAGAATAAGTATTAGTAAGAG
521 GGTATCCAAATGAGAAGACTATGTTTACGATGCCTAATCCAGAAAAGAATAAGGATTAGTAAGAG
* * *
1327673 TATTCATGTTTGTCTTTTTTAAGAAACAAACTTTGATTTTATCAAAAAAAAGTGGAAAGAAAAGC
586 TATTCATGTTTATCTTATTTAAGAAACAAACTTTGATTCTATCAAAAAAAAGTGGAAAGAAAAGC
** * *
1327738 ATTTCATGTAACACCAAAGCATCAATGTCATGTATCCAAATGAAGGGAATGTGTTTTGGCCTCCC
651 ATTTCATACAACACCAAAGCATCAATGTCATGTATCCAAAGGAAGGAAATGTGTTTTGGCCTCCC
*
1327803 AATCTTGAAAAGAATGGAGACTATTACGAGAATCGATACTTGTCTTATTTAAGGGATAAACTCTG
716 AATCTTGAAAAGAATGGAGACTATTACGAAAATCGATACTTGTCTTATTTAAGGGATAAACTCTG
* * * *
1327868 ATTTTAATGAAGATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAGTCATCAATATTATTTACA
781 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCATCAATATCATTTACA
1327933 CCAATAAGGAGAACGTGTTTATACTATCTAATCACAAAAT
846 CCAATAAGGAGAACGTGTTTATACTATCTAATCACAAAAT
* *
1327973 AATTTGTGGGTAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGAGATATCGTAATGAGAAG
1 AATTTATGGGTAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGAGATATCCTAATGAGAAG
* * * *
1328038 ACTATGTTTATGGTGCCTAATCTAGAAAAAAATGGGGGATTAGTATGAGTATTTATGTTTGTTTT
66 ACTATGTTTATGGTGCCTAATCTAGAAAAAAAT-AGGGATTACTAAGAGTATTTATGTTTGTCTT
* ** * * *
1328103 ATTTAAGAATCAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTTTTGCAACACTGA
130 ATTTAAGAAACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTACAACACCGA
* * * * *
1328168 AGCGTCAATGCCATGTATGCTAATGAATGGAAAGT-GTTTGGCTTCCTAATCTTGACAAGAATGG
195 AGCATCAATGCCATGTATCCTAATCAATGGAAAGTAGTTTGGCTTCCCAATCTTGAAAAGAATGG
** ** *
1328232 AGACTGTTATGAGAAATGATGCTTGTCTTATTTAAGGGAGGAACTTTCATTTT-ACGAAAAATAA
260 AGACTGTTACAAGAAACAATGCTTGTCTTATTT-A---AGGAACTTTCATTTTAAAG-AAAATAA
* * *
1328296 GGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATA-ACACTTATCCTAATGAAGAGAATG
320 GGCAAAGAAAAAATTTTCAAGCAAAAGAAAATCATCAATAGA-ACTTATCCCAATGAAGAGAATG
*
1328360 TGTGTATAGTGCCTAATCACCAAATGAATAATGATCATTACTAGAATCCATGTCTGTCTCATTTG
384 TGTGTATAGTGCCTAATCACCAAATGAATAAAGATCATTACTAGAATCCATGTCTGTCTCATTTG
* * * *
1328425 ATGCATGAACTTTAGACTTTACAAAAATTGGTGGGTAAAAAGCCTTTCTTATGAAACCAATGCAT
449 ATGCACGAAC-TTAGACTTTACAAAAAGTGATGGGTAAAAAGCCTTTCTTATGAAACCAAAGCAT
* *
1328490 CAATATAAGGTATCCTAATGAGAAGACTATGTTTACGATGCCTAATCC-GAAAAAGAATAGGGAT
513 CAATATAAGGTATCCAAATGAGAAGACTATGTTTACGATGCCTAATCCAG-AAAAGAATAAGGAT
** * *
1328554 TAGTGTGAGTATTCATGTTTATCTTATTTAAGAAACAAACTTTGATTCTA-CCAAAAATAGTGGA
577 TAGTAAGAGTATTCATGTTTATCTTATTTAAGAAACAAACTTTGATTCTATCAAAAAAAAGTGGA
* * *
1328618 AAGAAAAGC-TTCTCTTACAACACCAAAGCATCAATGTCATGTATCCTAGGGAAGGAAATGTGTT
642 AAGAAAAGCATT-TCATACAACACCAAAGCATCAATGTCATGTATCCAAAGGAAGGAAATGTGTT
* * * *
1328682 TT-GCCTTTCCAATCTTGCAAAGAATGGAGACTATTATGAAAATCGATGCTTGTCTTATTTAAGG
706 TTGGCC-TCCCAATCTTGAAAAGAATGGAGACTATTACGAAAATCGATACTTGTCTTATTTAAGG
* *
1328746 GATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAATTTC-ATGCAAAAGAAAATCATCA
770 GATAAACTCTGATTTTAAGGAAAATAGGGCAAAGAAAAG-ATTTCAATGCAAAAGAAAATCATCA
1328810 ATATCATTTA
834 ATATCATTTA
1328820 TCCTAATGAG
Statistics
Matches: 762, Mismatches: 73, Indels: 20
0.89 0.09 0.02
Matches are distributed among these distances:
885 147 0.19
886 116 0.15
888 8 0.01
889 335 0.44
890 156 0.20
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.30
Consensus pattern (885 bp):
AATTTATGGGTAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGAGATATCCTAATGAGAAG
ACTATGTTTATGGTGCCTAATCTAGAAAAAAATAGGGATTACTAAGAGTATTTATGTTTGTCTTA
TTTAAGAAACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTACAACACCGAA
GCATCAATGCCATGTATCCTAATCAATGGAAAGTAGTTTGGCTTCCCAATCTTGAAAAGAATGGA
GACTGTTACAAGAAACAATGCTTGTCTTATTTAAGGAACTTTCATTTTAAAGAAAATAAGGCAAA
GAAAAAATTTTCAAGCAAAAGAAAATCATCAATAGAACTTATCCCAATGAAGAGAATGTGTGTAT
AGTGCCTAATCACCAAATGAATAAAGATCATTACTAGAATCCATGTCTGTCTCATTTGATGCACG
AACTTAGACTTTACAAAAAGTGATGGGTAAAAAGCCTTTCTTATGAAACCAAAGCATCAATATAA
GGTATCCAAATGAGAAGACTATGTTTACGATGCCTAATCCAGAAAAGAATAAGGATTAGTAAGAG
TATTCATGTTTATCTTATTTAAGAAACAAACTTTGATTCTATCAAAAAAAAGTGGAAAGAAAAGC
ATTTCATACAACACCAAAGCATCAATGTCATGTATCCAAAGGAAGGAAATGTGTTTTGGCCTCCC
AATCTTGAAAAGAATGGAGACTATTACGAAAATCGATACTTGTCTTATTTAAGGGATAAACTCTG
ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCATCAATATCATTTACA
CCAATAAGGAGAACGTGTTTATACTATCTAATCACAAAAT
Found at i:1328879 original size:477 final size:475
Alignment explanation
Indices: 1327973--1329037 Score: 1482
Period size: 477 Copynumber: 2.2 Consensus size: 475
1327963 ATCACAAAAT
* ** * *
1327973 AATTTGTGGGTAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGAGATATCGTAATGAGAAG
1 AATTGGTGGGTAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGAGGTATCCTAATGAGAAG
* * * * *
1328038 ACTATGTTTATGGTGCCTAATCTAGAAAAA-AATGGGGGATTAGTATGAGTATTTATGTTTGTTT
66 ACTATGTTTATGATGCCTAATC-CGAAAAAGAAT-GGGGATTAGTATGAGTATTCATGTTTATCT
* * * * * * **
1328102 TATTTAAGAATCAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTTTTGCAACACTG
129 TATTTAAGAAACAAACTTTGATTCTACCAAAAATAGTGGAAAGAAAAGCTTCTCTTACAACACCA
* * * *
1328167 AAGCGTCAATGCCATGTATGCTAATGAATGGAAAGTGTTTGGCTTCCTAATCTTGACAAGAATGG
194 AAGCATCAATGCCATGTATCCTAAGGAATGGAAAGTGTTTGCCTTCCTAATCTTGACAAGAATGG
* *
1328232 AGACTGTTATGAGAAATGATGCTTGTCTTATTTAAGGGAGGAACTTTCATTTTACGAAAAATAAG
259 AGACTATTATGAGAAATGATGCTTGTCTTATTTAAGGGAGGAACTTTCATTTTAAGAAAAATAAG
*
1328297 GCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATAACACTTATCCTAATGAAGAGAATGTG
324 GCAAAGAAAAGAATTTCATGCAAAAGAAAATCATCAATAACACTTATCCTAATGAAGAGAATGTG
* * *
1328362 TGTATAGTGCCTAATCACCAAATGAATAATGATCATTACTAGAATCCATGTCTGTCTCATTTGAT
389 TGTATAGTGCCTAATCACCAAAGGAATAATGATCATTACTAGAATCCATGTCTGTCTCATTTAAG
*
1328427 GCATGAACTTTAGACTTTACAAA
454 GCACGAAC-TTAGACTTTACAAA
* * *
1328450 AATTGGTGGGTAAAAAGCCTTTCTTATGAAACCAATGCATCAATATAAGGTATCCTAATGAGAAG
1 AATTGGTGGGTAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGAGGTATCCTAATGAGAAG
* * *
1328515 ACTATGTTTACGATGCCTAATCCGAAAAAGAATAGGGATTAGTGTGAGTATTCATGTTTATCTTA
66 ACTATGTTTATGATGCCTAATCCGAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTATCTTA
1328580 TTTAAGAAACAAACTTTGATTCTACCAAAAATAGTGGAAAGAAAAGCTTCTCTTACAACACCAAA
131 TTTAAGAAACAAACTTTGATTCTACCAAAAATAGTGGAAAGAAAAGCTTCTCTTACAACACCAAA
* *
1328645 GCATCAATGTCATGTATCCTAGGGAA-GGAAATGTGTTTTGCCTTTCC-AATCTTG-CAAAGAAT
196 GCATCAATGCCATGTATCCTAAGGAATGGAAA-GTG-TTTGCC-TTCCTAATCTTGAC-AAGAAT
* * *
1328707 GGAGACTATTATGA-AAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT
257 GGAGACTATTATGAGAAAT-GATGCTTGTCTTATTTAAGGGAGGAACTTTCATTTTAAGAAAAAT
* * * * *
1328771 AGGGCAAAGAAAAGAATTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGATT
321 AAGGCAAAGAAAAGAATTTCATGCAAAAGAAAATCATCAATAACACTTATCCTAATGAAGAGAAT
* * * * *
1328836 GTGTTTGTAGTGCCTAATCACCAAAGGAATGGA-GATTATTACTAGAATCCATGTTTGTCTCATT
386 GTGTGTATAGTGCCTAATCACCAAAGGAAT-AATGATCATTACTAGAATCCATGTCTGTCTCATT
1328900 TAAGGCACGAACTTAGACTTTACAAA
450 TAAGGCACGAACTTAGACTTTACAAA
* *
1328926 AATTGGTGGGTAAAAAGGCTTTCTTGTGAAACCAAAG-ATTCAATATGAGGTATCCTAATTAGAA
1 AATTGGTGGGTAAAAAGCCTTTCTTGTGAAACCAAAGCA-TCAATATGAGGTATCCTAATGAGAA
*
1328990 GACTATGTTTATGCTGCGC-AATCCTG-AAAAGAATGGGGATTAGTATGA
65 GACTATGTTTATGATGC-CTAATCC-GAAAAAGAATGGGGATTAGTATGA
1329038 TTCTATCAAA
Statistics
Matches: 519, Mismatches: 59, Indels: 21
0.87 0.10 0.04
Matches are distributed among these distances:
475 6 0.01
476 230 0.44
477 278 0.54
478 5 0.01
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.31
Consensus pattern (475 bp):
AATTGGTGGGTAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGAGGTATCCTAATGAGAAG
ACTATGTTTATGATGCCTAATCCGAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTATCTTA
TTTAAGAAACAAACTTTGATTCTACCAAAAATAGTGGAAAGAAAAGCTTCTCTTACAACACCAAA
GCATCAATGCCATGTATCCTAAGGAATGGAAAGTGTTTGCCTTCCTAATCTTGACAAGAATGGAG
ACTATTATGAGAAATGATGCTTGTCTTATTTAAGGGAGGAACTTTCATTTTAAGAAAAATAAGGC
AAAGAAAAGAATTTCATGCAAAAGAAAATCATCAATAACACTTATCCTAATGAAGAGAATGTGTG
TATAGTGCCTAATCACCAAAGGAATAATGATCATTACTAGAATCCATGTCTGTCTCATTTAAGGC
ACGAACTTAGACTTTACAAA
Found at i:1334213 original size:42 final size:42
Alignment explanation
Indices: 1334167--1334285 Score: 166
Period size: 42 Copynumber: 2.8 Consensus size: 42
1334157 TTCTTCTCTC
* * * * *
1334167 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTTTCCTGTCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCT
1334209 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCT
* * *
1334251 CTCCTCCTATCATCCCTCCTTTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCT
1334286 TTGAGGGCTA
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 69 1.00
ACGTcount: A:0.09, C:0.45, G:0.02, T:0.45
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCT
Found at i:1334226 original size:12 final size:11
Alignment explanation
Indices: 1334201--1334275 Score: 59
Period size: 12 Copynumber: 6.8 Consensus size: 11
1334191 CTATTATCTT
*
1334201 TCCTGTCTCTCC
1 TCCTATCTC-CC
1334213 TCCTATCATCCC
1 TCCTATC-TCCC
1334225 TCCTATCT--C
1 TCCTATCTCCC
*
1334234 TACTATCT--C
1 TCCTATCTCCC
1334243 TCCTATCTCTCC
1 TCCTATCTC-CC
1334255 TCCTATCATCCC
1 TCCTATC-TCCC
*
1334267 TCCTTTCTC
1 TCCTATCTC
1334276 TTCTTTCTCT
Statistics
Matches: 54, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
9 16 0.30
11 3 0.06
12 31 0.57
13 4 0.07
ACGTcount: A:0.11, C:0.47, G:0.01, T:0.41
Consensus pattern (11 bp):
TCCTATCTCCC
Found at i:1334253 original size:9 final size:9
Alignment explanation
Indices: 1334224--1334255 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
1334214 CCTATCATCC
1334224 CTCCTATCT
1 CTCCTATCT
*
1334233 CTACTATCT
1 CTCCTATCT
1334242 CTCCTATCT
1 CTCCTATCT
1334251 CTCCT
1 CTCCT
1334256 CCTATCATCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.12, C:0.44, G:0.00, T:0.44
Consensus pattern (9 bp):
CTCCTATCT
Found at i:1336764 original size:159 final size:158
Alignment explanation
Indices: 1336087--1337247 Score: 418
Period size: 159 Copynumber: 7.3 Consensus size: 158
1336077 TTAGAGGGTA
* * * * *
1336087 AAAAGCCTTTCTTCCGAA-ACCAAAGCATCAATATGAGGTATCCTAATGAGAAGACAATGTTTA-
1 AAAAGCTTTTCTTAC-AACACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTAT
* * * * * * *
1336150 CGATGCCCAATCC-GAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAAAAA
65 AG-TGCCTAATCCTG-AAAAGAATAGGGATTAGTATAAGTATTTATGTTTGTCTTATTTAAGAGA
* ***
1336214 CAAACTTTGACTCTATTAAAAACAATGGAAAG
128 CAAACTTTGATTCTA-TAAAAATGGTGGAAAG
* * * * * ** *
1336246 AAATGCTTCTCTTGCAACACCAAAGCATCAATGTCATGTATCGTAGGGAGGGAA-A-TGTGTTT-
1 AAAAGCTTTTCTTACAACACCAAAGCATCAATATCATGTATCCTAATGA--GAAGACTATGTTTA
* * * * * * * * * *
1336308 TGGCTTTCC-AATCTTGAAAGGAATAGAGACTA-T-TACGTGAATTGATGCTTCTCTTATTTAAG
64 TAG--TGCCTAATCCTGAAAAGAATAGGGATTAGTATAAGT--ATTTATGTTTGTCTTATTTAAG
* ** * **
1336370 GGATGAACTTTGATTTTA-AGGAAAATAGG-ACAAAG
125 AGACAAACTTTGATTCTATA--AAAAT-GGTGGAAAG
* * * * ** * * * * * *
1336405 AAAAGATTTCCATGCAA-AAGAAATTCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTGT
1 AAAAGCTTTTCTTACAACACCAAA-GCATCAATATCATGTATCCTAATGAGAAGACTATGTTTAT
* * * * * * * ** *
1336469 AGTGCCAAATCACCG-AATGAAT-GAAGATCATTACT-AGAATCCATGTTTGTCTCATTT--GAG
65 AGTGCCTAATC-CTGAAAAGAATAG-GGATTAGTA-TAAGTATTTATGTTTGTCTTATTTAAGAG
* * * * **
1336529 GCATGAAGTTAGACTT-TACAAAAATTGGTGGGTA-
127 ACA--AACTTTGA-TTCTATAAAAA-TGGTGGAAAG
* * * * *
1336563 AAAATCCTTTCTTGCGAA-ACCAAAGCATCAATATGAGGTATCCTAATGAGAAGACTATGTTTAT
1 AAAAGCTTTTCTTAC-AACACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTAT
*
1336627 -GCTGCGC-AATCCTGAAAAGAATAGGGATTAGTATAAGTATTTATGTTTGTCTTATTTAAGAAA
65 AG-TGC-CTAATCCTGAAAAGAATAGGGATTAGTATAAGTATTTATGTTTGTCTTATTTAAGAGA
1336690 CAAACTTTGATTCTATCAAAAATGGTGGAAAG
128 CAAACTTTGATTCTAT-AAAAATGGTGGAAAG
* * * * *
1336722 AAAAGCTTTTCTTACAACACCAAAGCATCAATGTCATGTATCCTAATGA-AGGGATTGTGTTTTT
1 AAAAGCTTTTCTTACAACACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTATGTTTAT
* * * * * * * * * *
1336786 GGTTCCCAATCTTGAAAAGAAT-GGAGACTA-TTTCGAGAATTGT-TGCTTGTCTTATTTATGAG
65 AGTGCCTAATCCTGAAAAGAATAGG-GATTAGTAT-AAGTATT-TATGTTTGTCTTATTTAAGAG
** * * *
1336848 ATGAACTTTGATTTTA-AGGAAAATAGG-GCAAAC
127 ACAAACTTTGATTCTATA--AAAAT-GGTGGAAAG
* * * * * ** * * * * * *
1336881 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAGGAATGTGCTTATA
1 AAAAGCTTTTCTTACAACACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATA
* * * * * **
1336946 GTGCCTAATCAC--AAAATGAATTTAGACGATTACTAGAA-TCA---ATGTTTATCTCATTTGTG
66 GTGCCTAATC-CTGAAAA-GAA--TAG-GGATTAGTATAAGT-ATTTATGTTTGTCTTATTTAAG
* * * **
1337005 -GCTCAAGCTTAGACTT-TATAAAAATTGGTGGGTA-
125 AG-ACAAACTTTGA-TTCTATAAAAA-TGGTGGAAAG
* * * * * * *
1337039 AATAGCATTTCTTACTAA-ATCAAAGCATCAATATGAGGTATCCTGATGAGAAGACTATGTCTAT
1 AAAAGCTTTTCTTAC-AACACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTAT
* * * * * * *
1337103 AGTGCCTAATCTTGAAAAAGTATGGGGATTAGTATGAGTACTCATGTTTGTCTTCTTTAAGAGAC
65 AGTGCCTAATCCTG-AAAAGAATAGGGATTAGTATAAGTATTTATGTTTGTCTTATTTAAGAGAC
*
1337168 AAACTTTAATTCTATAAAAAATGGTGGAAAG
129 AAACTTTGATTCTAT-AAAAATGGTGGAAAG
* * * *
1337199 AAGAGCTTTTCTTGCAACACCCAAGCATCAATGTCATGTATCCTAATGA
1 AAAAGCTTTTCTTACAACACCAAAGCATCAATATCATGTATCCTAATGA
1337248 ATGGAAAGTG
Statistics
Matches: 716, Mismatches: 210, Indels: 151
0.66 0.19 0.14
Matches are distributed among these distances:
156 9 0.01
157 18 0.03
158 187 0.26
159 417 0.58
160 71 0.10
161 5 0.01
162 8 0.01
163 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (158 bp):
AAAAGCTTTTCTTACAACACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATA
GTGCCTAATCCTGAAAAGAATAGGGATTAGTATAAGTATTTATGTTTGTCTTATTTAAGAGACAA
ACTTTGATTCTATAAAAATGGTGGAAAG
Found at i:1336797 original size:476 final size:475
Alignment explanation
Indices: 1335902--1337289 Score: 1886
Period size: 476 Copynumber: 2.9 Consensus size: 475
1335892 GTTTTCATCA
* *
1335902 ATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAATATTTCTATGCAAACA-AAAATCATCAA
1 ATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAA-AGAAAATCATCAA
* ** *
1335966 TATCATTTATCCTAATGAGAAGAATGTGTTTATAGTGCCAAATCACCAAATGGGTGAAAATCATT
65 TATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCAAATCACCAAATGAATGAAGATCATT
* * * * * * * *
1336031 AC-----T-CATGTTTGTGTCATTTGAGGCACGAACTTAGGCATTACTAAAATTAGAGGGTAAAA
130 ACTAGAATCCATGTTTGTCTCATTTGAGGCATGAAGTTAGACTTTACAAAAATTGGTGGGTAAAA
* * *
1336090 AGCCTTTCTTCCGAAACCAAAGCATCAATATGAGGTATCCTAATGAGAAGACAATGTTTACGATG
195 AGCCTTTCTTACGAAACCAAAGCATCAATATGAGGTATCCTAATGAGAAGACTATGTTTATG-TG
*
1336155 CCCAATCC-GAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAAAAACAAAC
259 -CCAATCCTGAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAAACAAAC
* * *** * *
1336219 TTTGACTCTATTAAAAACAATGGAAAGAAATGCTTCTCTTGCAACACCAAAGCATCAATGTCATG
323 TTTGATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATG
* * * * * * *
1336284 TATCGT-AGGGAGGGAAATGTGTTTTGGCTTTCCAATCTTGAAAGGAATAGAGACTATTACGTGA
388 TATCCTAATGAAGGG-AATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGA
*
1336348 ATTGATGCTTCTCTTATTTAAGGG
452 ATTGATGCTTCTCTTATTTAAGAG
* *
1336372 ATGAACTTTGATTTTAAGGAAAATAGGACAAAGAAAAGATTTCCATGCAAAAGAAATTCATCAAT
1 ATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAAT
* *
1336437 ATCATTTATCCTAATGAGGAGAATGTGTTTGTAGTGCCAAATCACCGAATGAATGAAGATCATTA
66 ATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCAAATCACCAAATGAATGAAGATCATTA
1336502 CTAGAATCCATGTTTGTCTCATTTGAGGCATGAAGTTAGACTTTACAAAAATTGGTGGGTAAAAA
131 CTAGAATCCATGTTTGTCTCATTTGAGGCATGAAGTTAGACTTTACAAAAATTGGTGGGTAAAAA
* *
1336567 TCCTTTCTTGCGAAACCAAAGCATCAATATGAGGTATCCTAATGAGAAGACTATGTTTATGCTGC
196 GCCTTTCTTACGAAACCAAAGCATCAATATGAGGTATCCTAATGAGAAGACTATGTTTATG-TGC
* * *
1336632 GCAATCCTG-AAAAGAATAGGGATTAGTATAAGTATTTATGTTTGTCTTATTTAAGAAACAAACT
260 -CAATCCTGAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAAACAAACT
* *
1336696 TTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACAACACCAAAGCATCAATGTCATGT
324 TTGATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGT
* *
1336761 ATCCTAATGAAGGGATTGTGTTTTTGG-TTCCCAATCTTGAAAAGAATGGAGACTATTTCGAGAA
389 ATCCTAATGAAGGGAATGTG-TTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAA
* * *
1336825 TTGTTGCTTGTCTTATTTATGAG
453 TTGATGCTTCTCTTATTTAAGAG
*
1336848 ATGAACTTTGATTTTAAGGAAAATAGGGCAAACAAAAGATTTCCATGCAAAAGAAAATCATCAAT
1 ATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAAT
* * * **
1336913 ATCATTTATCCTAATGA-GAGGAATGTGCTTATAGTGCCTAATCACAAAATGAATTTAGA-CGAT
66 ATCATTTATCCTAATGAGGA-GAATGTGTTTATAGTGCCAAATCACCAAATGAATGAAGATC-AT
* * * * *
1336976 TACTAGAATCAATGTTTATCTCATTTGTGGC-TCAAGCTTAGACTTTATAAAAATTGGTGGGTAA
129 TACTAGAATCCATGTTTGTCTCATTTGAGGCATGAAG-TTAGACTTTACAAAAATTGGTGGGTAA
* * * * * *
1337040 ATAGCATTTCTTACTAAATCAAAGCATCAATATGAGGTATCCTGATGAGAAGACTATGTCTATAG
193 AAAGCCTTTCTTACGAAACCAAAGCATCAATATGAGGTATCCTAATGAGAAGACTATGTTTAT-G
* * * * *
1337105 TGCCTAATCTTGAAAAAGTATGGGGATTAGTATGAGTACTCATGTTTGTCTTCTTTAAGAGACAA
257 TGCC-AATCCTGAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAAACAA
* * *
1337170 ACTTTAATTCTATAAAAAATGGTGGAAAGAAGAGCTTTTCTTGCAACACCCAAGCATCAATGTCA
321 ACTTTGATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCA
* *
1337235 TGTATCCTAATGAATGGAAAGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGA
386 TGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGA
1337290 TTACTCATTC
Statistics
Matches: 813, Mismatches: 87, Indels: 29
0.88 0.09 0.03
Matches are distributed among these distances:
469 1 0.00
470 119 0.15
475 10 0.01
476 519 0.64
477 164 0.20
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (475 bp):
ATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAAT
ATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCAAATCACCAAATGAATGAAGATCATTA
CTAGAATCCATGTTTGTCTCATTTGAGGCATGAAGTTAGACTTTACAAAAATTGGTGGGTAAAAA
GCCTTTCTTACGAAACCAAAGCATCAATATGAGGTATCCTAATGAGAAGACTATGTTTATGTGCC
AATCCTGAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAAACAAACTTT
GATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTAT
CCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATTG
ATGCTTCTCTTATTTAAGAG
Found at i:1338972 original size:893 final size:894
Alignment explanation
Indices: 1336700--1339077 Score: 3740
Period size: 893 Copynumber: 2.7 Consensus size: 894
1336690 CAAACTTTGA
** * * *
1336700 TTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACAACACCAAAGCATCAATGTCATGTATCC
1 TTCTATCAAAAATGGCAGAAAGAAAAGCCTTTCTTGCAACACCAAGGCATCAATGTCATGTATCC
* *
1336765 TAATGAAGGGATTGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTTCGAGAATTGTT
66 TAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATTGTT
* * **
1336830 GCTTGTCTTATTT-ATGAGATGAACTTTGATTTTAAGGAAAATAGGGCAAACAAAAGATTTCCAT
131 GCTTGTCTTATTTAAAG-GATCAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCCAT
* * * *
1336894 GCAAAAGAAAATCATCAATATCATTTATCCTAATGA-GAGGAATGTGCTTATAGTGCCTAATCAC
195 GCAAAAGAAAATCATTAATATCATTTATCTTAATGAGGA-GAATGTGTTTATAGTGCCAAATCAC
* ** * *
1336958 AAAATGAATTTAGA-CGATTACTAGAATCAATGTTTATCTCATTTGTGGCT-C-AAGCTTAGACT
259 TAAATGAATGAAGATC-ATTACT----T--ATGTTTATGTCATTTGAGG-TACGAA-CTTAGACT
* * * * *
1337020 TTA-TAAAAATTGGTGGGTAAATAGCATTTCTTACTAAATCAAAGCATCAATATGAGGTATCCTG
315 TTACT-AAAATTGGAGGGTAAAAAGCATTTCTTGC-AAACCAAAGCATCAATATGAGGTATCCTA
* * * *
1337084 ATGAGAAGACTATGTCTATAGTGCCTAATCTTGAAAAAGT-ATGGGGATTAGTATGAGTACTCAT
378 ATGAGAAGACTACGTTTATGGTGCCTAATC-TGAAAAA-TAATGGGGATTAGTATGAGTATTCAT
* * *
1337148 GTTTGTCTTCTTTAAGAGACAAACTTTAATTCTATAAAAAATGGTGGAAAGAAGAGCTTTTCTTG
441 GTTTGTCTTATTTAAGAGACAAACTTTAATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTG
*
1337213 CAACACCCAAGCATCAATGTCATGTATCCTAATGAATGGAAAGTGTTTTGGCTTCC-CAATCTTG
506 CAACACCCAAGCATCAATGTCATGTATCCTAATGAATGGAAAGTGTTTTGGC-TCCTTAATCTTG
* *
1337277 AAAAGAATGGAGATTACTCATTCTTTTCTGGATTAGGCACCATAAACATAGTCTTCTCTTTAGGA
570 AAAAGAATGGAGATTACTCATTCTTTTCAGGATTAGGCACCATAAACACAGTCTTCTCTTTAGGA
*
1337342 TACCTCATGTTGATGCTTTGGTTCCATAAGAAAGCCTTTTTACCCAACAATTTTTATAAAGTCTA
635 TACCTCATGTTGATGCTTTGGTTCCACAAGAAAGCCTTTTTACCCAACAATTTTTATAAAGTCTA
*
1337407 AGTTCGTGCATCAAATGAAACAGACATTGATTCTAGTAACGATCTTTATTCATTAGGTGATTAGG
700 AGTTCGTGCATCAAATGAAACAGACATGGATTCTAGTAACGATCTTTATTCATTAGGTGATTAGG
* *
1337472 CACTATAAACACATTCTCCTCATTAGGATAAATGATATTGTTGATTTTCATTTGCATGGAAATCT
765 CACTATAAACACATTCTCCTCAATAGGATAAATGATATTGTTGATTTTCATTTGCATGCAAATCT
* * * *
1337537 TTTCTTTGCCCTATTTTCCTCAAAATCAAAGTTGATCCCCTAAATAAGACAGGCATTGATTTTCG
830 TTTCTTTGCCCTATTTTCCTCAAAATCAAAGTTGATCCCCTAAATAAAACAGGCATCGACTCTCG
* * * ** * * *
1337602 TTCTGTCAAAAATGGCAGAAATAAAA-ACTATTCTTGTGACATCGAGGCATCAATGTCATGTTTC
1 TTCTATCAAAAATGGCAGAAAGAAAAGCCT-TTCTTGCAACACCAAGGCATCAATGTCATGTATC
* *
1337666 CTAATGAAGGGAATGTGTTTTTGGTTCCTAATCTTGGAAAGAATGGAGACTATTACGAGAATTGT
65 CTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATTGT
1337731 TGCTTGTCTTATTTAAAGGATCAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCCAT
130 TGCTTGTCTTATTTAAAGGATCAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCCAT
1337796 GCAAAAGAAAATCATTAATATCATTTATCTTAATGAGGAGAATGTGTTTATAGTGCCAAATCACT
195 GCAAAAGAAAATCATTAATATCATTTATCTTAATGAGGAGAATGTGTTTATAGTGCCAAATCACT
1337861 AAATGAATGAAGATCATTACTTATGTTTATGTCATTTGAGGTACGAACTTAGACTTTACTAAAAT
260 AAATGAATGAAGATCATTACTTATGTTTATGTCATTTGAGGTACGAACTTAGACTTTACTAAAAT
* *
1337926 TGGAGGGTAAAAAGGATTTCTTGGGAAACCAAAGCATCAATATGAGGTATCCTAATGAGAAGACT
325 TGGAGGGTAAAAAGCATTTCTT-GCAAACCAAAGCATCAATATGAGGTATCCTAATGAGAAGACT
1337991 ACGTTTATGGTGCCTAATCTGAAAAATAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTT
389 ACGTTTATGGTGCCTAATCTGAAAAATAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTT
1338056 AAGAGACAAACTTTAATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCCAAGCA
454 AAGAGACAAACTTTAATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCCAAGCA
1338121 TCAATGTCATGTATCCTAATGAATGGAAAGTGTTTTGGCTCCTTAATCTTGAAAAGAATGGAGAT
519 TCAATGTCATGTATCCTAATGAATGGAAAGTGTTTTGGCTCCTTAATCTTGAAAAGAATGGAGAT
1338186 TACTCATTCTTTTCAGGATTAGGCACCATAAACACAGTCTTCTCTTTAGGATACCTCATGTTGAT
584 TACTCATTCTTTTCAGGATTAGGCACCATAAACACAGTCTTCTCTTTAGGATACCTCATGTTGAT
** *
1338251 GCTTTGGTTTTACAAGAAAGGCC-TTTTACCCAACAATTTTTTTAAAGTCTAAGTTCGTGCATCA
649 GCTTTGGTTCCACAAGAAA-GCCTTTTTACCCAACAATTTTTATAAAGTCTAAGTTCGTGCATCA
* *
1338315 AATGAAACAGACATGGATTCTAGTAATGATCTTTATTCATTTGGTGATTAGGCACTATAAACACA
713 AATGAAACAGACATGGATTCTAGTAACGATCTTTATTCATTAGGTGATTAGGCACTATAAACACA
1338380 TTCTCCTCAATAGGATAAATGATATTGTTGATTTTCATTTGCATGCAAATCTTTTCTTTGCCCTA
778 TTCTCCTCAATAGGATAAATGATATTGTTGATTTTCATTTGCATGCAAATCTTTTCTTTGCCCTA
* * *
1338445 TTTTCCTCAAAATCAAA-TTTATCCCTTAAATAAAATAGGCATCGACTCTCG
843 TTTTCCTCAAAATCAAAGTTGATCCCCTAAATAAAACAGGCATCGACTCTCG
1338496 TTCTATCAAAAATGGCAGAAAGAAAAGCCTTTCTTGCAACACCAAGGCATCAATGTCATGTATCC
1 TTCTATCAAAAATGGCAGAAAGAAAAGCCTTTCTTGCAACACCAAGGCATCAATGTCATGTATCC
** * *
1338561 TAATGAAGGGAATGT-ACTTTGGTTCCCAATCTTGAAAAGAACGGAGACTATTACGGGAATTGTT
66 TAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATTGTT
* * *
1338625 GCTCGTCTTATTTAAAGGATCAAGTTTGATTTTAAGGAAAATAGGGTAAGGAAAAGATTTCCATG
131 GCTTGTCTTATTTAAAGGATCAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCCATG
*
1338690 CAAAAGAAAAACATTAATATCATTTATCTTAATGAGGAGAATGTGTTTATAGTGCCAAATCACTA
196 CAAAAGAAAATCATTAATATCATTTATCTTAATGAGGAGAATGTGTTTATAGTGCCAAATCACTA
1338755 AATGAATGAAGATCATTACTTATGTTTATGTCATTTGAGGTACGAACTTAGACTTTACTAAAATT
261 AATGAATGAAGATCATTACTTATGTTTATGTCATTTGAGGTACGAACTTAGACTTTACTAAAATT
*
1338820 GGAGGGTAAAAAGCATTTCTTGCAACACCAAAGCATCAATATAAGGTATCCTAATGAGAAGACTA
326 GGAGGGTAAAAAGCATTTCTTGCAA-ACCAAAGCATCAATATGAGGTATCCTAATGAGAAGACTA
1338885 CGTTTATGGTGCCTAATCTGAAAAATAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTA
390 CGTTTATGGTGCCTAATCTGAAAAATAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTA
* *
1338950 AGAGACAAACTTTAATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCGT
455 AGAGACAAACTTTAATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCCAAGCAT
* * * * * *
1339015 TAATGTCATGTATCCAAAGGAAGGGAATGCGTTTTGGCT--TTCCAATCTTGAAAAGAATGGAGA
520 CAATGTCATGTATCCTAATGAATGGAAAGTGTTTTGGCTCCTT--AATCTTGAAAAGAATGGAGA
1339078 CTATTATGAG
Statistics
Matches: 1369, Mismatches: 92, Indels: 39
0.91 0.06 0.03
Matches are distributed among these distances:
891 2 0.00
892 3 0.00
893 473 0.35
894 100 0.07
895 429 0.31
896 110 0.08
897 3 0.00
898 1 0.00
901 1 0.00
902 242 0.18
903 5 0.00
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.33
Consensus pattern (894 bp):
TTCTATCAAAAATGGCAGAAAGAAAAGCCTTTCTTGCAACACCAAGGCATCAATGTCATGTATCC
TAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATTGTT
GCTTGTCTTATTTAAAGGATCAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCCATG
CAAAAGAAAATCATTAATATCATTTATCTTAATGAGGAGAATGTGTTTATAGTGCCAAATCACTA
AATGAATGAAGATCATTACTTATGTTTATGTCATTTGAGGTACGAACTTAGACTTTACTAAAATT
GGAGGGTAAAAAGCATTTCTTGCAAACCAAAGCATCAATATGAGGTATCCTAATGAGAAGACTAC
GTTTATGGTGCCTAATCTGAAAAATAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAA
GAGACAAACTTTAATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCCAAGCATC
AATGTCATGTATCCTAATGAATGGAAAGTGTTTTGGCTCCTTAATCTTGAAAAGAATGGAGATTA
CTCATTCTTTTCAGGATTAGGCACCATAAACACAGTCTTCTCTTTAGGATACCTCATGTTGATGC
TTTGGTTCCACAAGAAAGCCTTTTTACCCAACAATTTTTATAAAGTCTAAGTTCGTGCATCAAAT
GAAACAGACATGGATTCTAGTAACGATCTTTATTCATTAGGTGATTAGGCACTATAAACACATTC
TCCTCAATAGGATAAATGATATTGTTGATTTTCATTTGCATGCAAATCTTTTCTTTGCCCTATTT
TCCTCAAAATCAAAGTTGATCCCCTAAATAAAACAGGCATCGACTCTCG
Found at i:1340336 original size:470 final size:470
Alignment explanation
Indices: 1338496--1340355 Score: 2174
Period size: 470 Copynumber: 4.0 Consensus size: 470
1338486 TCGACTCTCG
** * *
1338496 TTCTATCAAAAATGGCAGAAAGAAAAGCCTTTCTTGCAACACCAAGGCATCAATGTCATGTATCC
1 TTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTAT-C
** * ** *
1338561 TAATGAAGGGAATGTACTTTGGTTCCCAATCTTGAAAAGAACGGAGACTATTACGGGAATTGTTG
65 TAA-GAAGGGAATGTGTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACAAGAATTGATG
* * * * * * *
1338626 CTCGTCTTATTTAAAGGATCAAGTTTGATTTTAAGGAAAATAGGGTAAGGAAAAGATTTCCATGC
129 CTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATA-GGCAAAGAAAAGATTTCCATGG
* * * *
1338691 AAAAGAAAAACATTAATATCATTTA-TCTTAATGAGGAGAATGTGTTTATAGTGCCAAATCACTA
193 AAAAGAAAATCATTAATATCATTTATTC-TAAAGAGGAGAATGTGTTTATAGTGCCTAATCACCA
* * * *
1338755 AATGAATGAAGATCATTAC----TTATGTTTATGTCATTTGAGGTACGAACTTAGACTTTACTAA
257 AATGAATGAAGATCATTACTAGATTATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAA
*
1338816 AATTGGA-GGGTAAAAAGCATTTCTTGCAACACCAAAGCATCAATATAAGGTATCCTAATGAGAA
322 AATT-GATGGGTAAAAAGCATTTCTTGCAAAACCAAAGCATCAATATAAGGTATCCTAATGAGAA
** ** *
1338880 GACTACGTTTATGGTGCCTAATCTGAAAAATAATGGGGATTAGTATGAGTATTCATGTTTGTCTT
386 GACTATATTTATGGTGCCTAATCCAAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTT
* *
1338945 ATTTAAGAGACAAACTTTAA
451 ATTTAAAAGACAAACTTTGA
* *
1338965 TTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCGTTAATGTCATGTATCC
1 TTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTAT-C
* * * ** *
1339030 AAAGGAAGGGAATGCGTTTTGGCTTTCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCGAT
65 TAA-GAAGGGAATGTGTTTTGG-TTCCCAATCTTGAAAAGAATGGAGACTATTACAAGAATTGAT
* * *
1339095 GCTTGTCATATTTAAGGGATGAACTTTGATTTTAATGAAAATAGGGCAAAGAAAAGATTTGCATG
128 GCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATA-GGCAAAGAAAAGATTTCCATG
* * * *
1339160 GAAAAGAAAATCATTAATATCATTTA-TCCAAATGGGGAGATTGTGTTTGTAGTGCCTAATCACC
192 GAAAAGAAAATCATTAATATCATTTATTCTAAA-GAGGAGAATGTGTTTATAGTGCCTAATCACC
* * * *
1339224 AAAGGAATGGAGATTATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC
256 AAATGAATGAAGATCATTACTAG-AT-TATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC
* * * * *** *
1339289 AGAAATTGGTGGGTAAAATGCCTTTCTTGTGGAACCAAAGCATCAATATGAGGTATCCTAATGAG
319 AAAAATTGATGGGTAAAAAGCATTTCTTGCAAAACCAAAGCATCAATATAAGGTATCCTAATGAG
* * * * *
1339354 AAGACTATATTTATAGTGCCTAATCCAGAAAGGAATGGAGATTAGTATGAGTATTTATGTTTGTC
384 AAGACTATATTTATGGTGCCTAATCCAAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC
1339419 TTATTTAAGAA-ACAAACTTTGA
449 TTATTTAA-AAGACAAACTTTGA
* * * * * * * * *
1339441 TTCTTTCAAAAATAGTGGATAGAAAAGCTTTTCATGCGATACTAATGCATCAAGGTCATGTATCC
1 TTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTAT-C
*
1339506 TAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAAGAATGGAGACTATTACAAGAATTGA
65 TAA-GAAGGGAATGTG-TTTTGGTTCCCAATCTTG-AAAAGAATGGAGACTATTACAAGAATTGA
* * * *
1339571 TACTTGCCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGTGCAAAGAAAAGATTTCAAT
127 TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAG-GCAAAGAAAAGATTTCCAT
* * * * * * *
1339636 GCAAAAAGAAAATCATTAATATCTTTTATACTTATGAGAAAAATGTGTTTATAGTGCCTAATCAC
191 G-GAAAAGAAAATCATTAATATCATTTATTCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCAC
* * * ** *
1339701 AAAATGAATGAAGACCATTATTAGA--A----T-T-TC---T-A-GCTTGAACTTAGACTTTATA
255 CAAATGAATGAAGATCATTACTAGATTATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
* * * * * * * * *
1339753 AAAGTTGGTGGGTGAATAGCCTTTCTTACGAAACCAAAGCATCAATATAAGGTATCTTAAAGAGA
320 AAAATTGATGGGTAAAAAGCATTTCTTGCAAAACCAAAGCATCAATATAAGGTATCCTAATGAGA
** **
1339818 AGACTATATTTATGGTGCCTAATCCTGAAAATTATGGGGATTAGTATGAGTATTCATGTTTGTCT
385 AGACTATATTTATGGTGCCTAATCCAAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCT
1339883 TATTTAAAAGACAAACTTTGA
450 TATTTAAAAGACAAACTTTGA
*
1339904 TTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTAT-T
1 TTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCT
*
1339968 -A-AAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATTGAGACTATTACAAGAATTGATGC
66 AAGAAGGGAATGTGTTTTGG-TTCCCAATCTTGAAAAGAATGGAGACTATTACAAGAATTGATGC
* *
1340031 TTGAT-TTATTTAATGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAAAATTT-CATG
130 TTG-TCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT-AGGCAAAG-AAAAGATTTCCATG
* * * *
1340094 GAAAA-TAAATCATCAATATCATTTATTGTAAAGAGGAGAATGTGTTTATAGTGCTTAATCACCA
192 GAAAAGAAAATCATTAATATCATTTATTCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCACCA
* * * *
1340158 AATGAATAAAGATCATTACTAGAATCTATGTTTGTCTCCTTTGAGGCACGAACTTAAATTTTACA
257 AATGAATGAAGATCATTACTAG-AT-TATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
* * *
1340223 AAAATTGATGGGTAAAAAGCATTTCTTGTAAAACCAAAGCATCAATATGAGGCATCCCT-ATGAG
320 AAAATTGATGGGTAAAAAGCATTTCTTGCAAAACCAAAGCATCAATATAAGGTAT-CCTAATGAG
* * * *
1340287 AAGACTATGTTTATGGTGTCTAATCCAAAAAAGAATGGGGATTAGTATGAGTATTTATATTTGTC
384 AAGACTATATTTATGGTGCCTAATCCAAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC
1340352 TTAT
449 TTAT
1340356 GTTAGGATCT
Statistics
Matches: 1169, Mismatches: 186, Indels: 71
0.82 0.13 0.05
Matches are distributed among these distances:
455 67 0.06
456 5 0.00
457 81 0.07
458 32 0.03
459 1 0.00
460 1 0.00
461 1 0.00
462 2 0.00
463 201 0.17
464 2 0.00
465 3 0.00
468 3 0.00
469 80 0.07
470 287 0.25
471 2 0.00
474 1 0.00
475 2 0.00
476 238 0.20
477 91 0.08
478 67 0.06
479 2 0.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (470 bp):
TTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCT
AAGAAGGGAATGTGTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACAAGAATTGATGCT
TGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGCAAAGAAAAGATTTCCATGGAAA
AGAAAATCATTAATATCATTTATTCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCACCAAATG
AATGAAGATCATTACTAGATTATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT
GATGGGTAAAAAGCATTTCTTGCAAAACCAAAGCATCAATATAAGGTATCCTAATGAGAAGACTA
TATTTATGGTGCCTAATCCAAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTA
AAAGACAAACTTTGA
Found at i:1340767 original size:13 final size:13
Alignment explanation
Indices: 1340749--1340774 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1340739 ACACCAAAGT
1340749 ATGTATCGATACA
1 ATGTATCGATACA
1340762 ATGTATCGATACA
1 ATGTATCGATACA
1340775 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1340772 original size:33 final size:33
Alignment explanation
Indices: 1340730--1340794 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
1340720 TAGCCAAACT
* *
1340730 TGTATCGATACAC-CAAAGTATGTATCGATACAA
1 TGTATCGATACACAAAAAAT-TGTATCGATACAA
1340763 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
1340795 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 25 0.86
34 4 0.14
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:1346626 original size:42 final size:42
Alignment explanation
Indices: 1346562--1346690 Score: 179
Period size: 42 Copynumber: 3.1 Consensus size: 42
1346552 TCTTCCATCT
* * * *
1346562 TCTTCTCTC-CTCCTCTTGTCATCCCTCCTCTCTCTATTATC
1 TCTTCTGTCTCTCCTCCTATCATCCCTCCTCTCTCTACTATC
*
1346603 TCTTCTGTCTCTCCTCCTATCATCCCTCCTATCTCTACTATC
1 TCTTCTGTCTCTCCTCCTATCATCCCTCCTCTCTCTACTATC
* * *
1346645 TCTCCTGTCTCTCCTCCTATCATCCCTCCTCTCTCTTCTTTC
1 TCTTCTGTCTCTCCTCCTATCATCCCTCCTCTCTCTACTATC
1346687 TCTT
1 TCTT
1346691 TGAGGGCTAC
Statistics
Matches: 77, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
41 8 0.10
42 69 0.90
ACGTcount: A:0.08, C:0.44, G:0.02, T:0.46
Consensus pattern (42 bp):
TCTTCTGTCTCTCCTCCTATCATCCCTCCTCTCTCTACTATC
Found at i:1351096 original size:13 final size:13
Alignment explanation
Indices: 1351078--1351103 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1351068 ACACCAAAGT
1351078 ATGTATCGATACA
1 ATGTATCGATACA
1351091 ATGTATCGATACA
1 ATGTATCGATACA
1351104 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1353248 original size:42 final size:42
Alignment explanation
Indices: 1353186--1353314 Score: 179
Period size: 42 Copynumber: 3.1 Consensus size: 42
1353176 GTAGCCCTCA
* *
1353186 AAGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAG
1 AAGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAG
* *
1353228 GAGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAG
1 AAGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAG
* * * *
1353270 AAGAGATAATAGAGAGAGGAGGGATGACAAGAGGAG-GAGAG
1 AAGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAG
1353311 AAGA
1 AAGA
1353315 AGATGGAAGA
Statistics
Matches: 77, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
41 8 0.10
42 69 0.90
ACGTcount: A:0.46, C:0.02, G:0.44, T:0.08
Consensus pattern (42 bp):
AAGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAG
Found at i:1361472 original size:13 final size:13
Alignment explanation
Indices: 1361454--1361479 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1361444 ACATTTTACT
1361454 TTGTATCGATACA
1 TTGTATCGATACA
1361467 TTGTATCGATACA
1 TTGTATCGATACA
1361480 GGGGGATTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1364061 original size:20 final size:20
Alignment explanation
Indices: 1364035--1364087 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
1364025 GTAGCCAAAC
* *
1364035 TTGTATCGATACAC-CAAAG
1 TTGTATCGATACACAAAAAA
1364054 TATGTATCGATACACAAAAAA
1 T-TGTATCGATACACAAAAAA
1364075 TTGTATCGATACA
1 TTGTATCGATACA
1364088 TTCACACGGG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
19 1 0.03
20 25 0.83
21 4 0.13
ACGTcount: A:0.42, C:0.17, G:0.13, T:0.28
Consensus pattern (20 bp):
TTGTATCGATACACAAAAAA
Found at i:1365641 original size:278 final size:276
Alignment explanation
Indices: 1365105--1365652 Score: 780
Period size: 278 Copynumber: 2.0 Consensus size: 276
1365095 AACTTAAAGT
*
1365105 GCCTTTCTTACGAAACCAAAACATCAATATAAGGTATCATAATGAGAAGACTATGTTTATGGTGC
1 GCCTTTCTTACGAAACCAAAACATCAATAAAAGGTATCATAATGAGAAGACTATGTTTATGGTGC
** * * * *
1365170 CTAATTTGGAAAAGAATGGGGATTAGTACGAGTATTTATGTTTGTCTTATTTCAGAGACATTTTA
66 CTAAACTGGAAAAGAATGGGGAATAGTACGAGTATTTATGTTTGTCTTATTTAAGAAACACTTTA
* * *
1365235 ATTTTATCGAAAATGGTCGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATTAATGTTAGGTATT
131 ATTCTATCAAAAATGGTCGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATTAATGTCAGGTATT
** * *
1365300 CTAATGAAGGGAATGTGTTTTGGCTTTCCAATCTTGAAATGAATGGAGACTATTACAAGAATCGA
196 CTAACAAAGGGAATGCGTTTTGGCTTTCCAATCTTGAAAAGAATGGAGACTATTACAAGAATCGA
*
1365365 TGCTTGTTTTATATAA
261 TGCTTATTTTATATAA
* *
1365381 GCCTTTCTTACGAAACCAAAGCATCAATAAAAGGTATCATAATGAGAAGGCTATGTTTATGGTGC
1 GCCTTTCTTACGAAACCAAAACATCAATAAAAGGTATCATAATGAGAAGACTATGTTTATGGTGC
* * *
1365446 CTAAACTGGAAAAGAATGGGGAATAGTATGGGT-TTT-CGTTTTGGTCTTATTTAAGAAACAAAC
66 CTAAACTGGAAAAGAATGGGGAATAGTACGAGTATTTATG-TTT-GTCTTATTTAAGAAAC--AC
* * *
1365509 TTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATTAATGTCATG
127 TTTAATTCTATCAAAAATGGTCGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATTAATGTCAGG
* * *
1365574 T-TTCCTAACAAAGGGAATGCGTTTTGGC-TTCTTAATCTTGAAAAGAATGGAGACTGTTACCAG
192 TATT-CTAACAAAGGGAATGCGTTTTGGCTTTC-CAATCTTGAAAAGAATGGAGACTATTACAAG
1365637 AATCGATGCTTATTTT
255 AATCGATGCTTATTTT
1365653 TTTTAAGAGA
Statistics
Matches: 240, Mismatches: 26, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
274 1 0.00
275 6 0.03
276 104 0.43
277 5 0.02
278 124 0.52
ACGTcount: A:0.34, C:0.13, G:0.20, T:0.33
Consensus pattern (276 bp):
GCCTTTCTTACGAAACCAAAACATCAATAAAAGGTATCATAATGAGAAGACTATGTTTATGGTGC
CTAAACTGGAAAAGAATGGGGAATAGTACGAGTATTTATGTTTGTCTTATTTAAGAAACACTTTA
ATTCTATCAAAAATGGTCGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATTAATGTCAGGTATT
CTAACAAAGGGAATGCGTTTTGGCTTTCCAATCTTGAAAAGAATGGAGACTATTACAAGAATCGA
TGCTTATTTTATATAA
Found at i:1366271 original size:476 final size:473
Alignment explanation
Indices: 1365379--1366638 Score: 1559
Period size: 476 Copynumber: 2.7 Consensus size: 473
1365369 TGTTTTATAT
* *
1365379 AAGCCTTTCTTACGAAACCAAAGCATCAATAAAAGGTATC-ATAATGAGAAGGCTATGTTTATGG
1 AAGCCTTTCTTATGAAACCAAAGCATCAATAAAAGGTATCTAT-ATGAGAAGACTATGTTTATGG
* * * * *
1365443 TGCCTAA-ACTGGAAAAGAATGGGGAATAGTATGGGTTTTCGTTTTGGTCTTATTTAAGAAACAA
65 TGCCTAATTC-GGAAAAGAATGGGGATTAGTATGAGTATTCATTTT-GTCTTATTTAAGAAACAA
* * *
1365507 ACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATTAATGTCA
128 ACTTTGATTCTATCAAAAACGATGCAAAGAAAAGCTTTTCTTGCAACACCAAAGCATTAATGTCA
* ** ** *
1365572 TGTTTCCTAACAAAGGGAATGCGTTTTGGCTTCTTAATCTTGAAAAGAATGGAGACTGTTACCAG
193 TGTATCCTAATGAAGGGAATGCGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAG
* * * * *
1365637 AATCGATGCTTATTTTTTTTAAGAGATGAACTTTGATTTTAAGGAAATTAGGGAAAATAAAAAAT
258 AAT-GTTGCTTGTTTTATTTAAGGGATGAACTTTGATTTTAAGGAAA-TAGGGCAAATAAAAAAT
* *
1365702 TTCTATTCAAAAGAAAATCATCAATATCATTTATAGTAAAGAAGAGAATGTGTTTAAAGTGCCTA
321 TTCTATGCAAAAGAAAATCATCAATATCATTTATAGTAAAGAAGAGAATATGTTTAAAGTGCCTA
*
1365767 ATCACCAAATGAATGAAAATCATTACTAGAATCCAT-TTT-TATCTTAGTTGAGGCACGAACTTA
386 ATCACCAAATGAATGAAAATCATTACTAGAATCCATGTTTGAATC--AGTTGAGGCACGAACTTA
* *
1365830 GACTTTACAAAAATTGGAAGGTAA-A
449 GACTTGACAAAAATT-GAAGGGAAGA
* *
1365855 AAGCCTTTCTTATGAAACCAAAGCATCAATACAAGGCATCTATATGAGAAGACTATGTTTATGGT
1 AAGCCTTTCTTATGAAACCAAAGCATCAATAAAAGGTATCTATATGAGAAGACTATGTTTATGGT
* *
1365920 ACCTAATTCGGAAAAGAATGGGGATTAATATGAGTATTCATGTTTGTCTTATTTAAGAAACAAAC
66 GCCTAATTCGGAAAAGAATGGGGATTAGTATGAGTATTCAT-TTTGTCTTATTTAAGAAACAAAC
* *
1365985 TTTGATTCTATCAAAAACGATGCAAAGAAAAGCTTTTCTTGTAACACCAAAGCATCAATGTCATG
130 TTTGATTCTATCAAAAACGATGCAAAGAAAAGCTTTTCTTGCAACACCAAAGCATTAATGTCATG
* * *
1366050 TGTCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATAGAGACTGTTACGAGAA
195 TATCCTAATGAAGGGAATGCGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAG-A
* * *
1366115 ATGTTGCTTGTTTTATTTAAGGGATAAACTTTGTTTTTAAGGCAAATAGGGCAAATAAAAGATTT
259 ATGTTGCTTGTTTTATTTAAGGGATGAACTTTGATTTTAAGG-AAATAGGGCAAATAAAAAATTT
* * * * *
1366180 -TCATGGAAAAGAAAATCATCAATATCGTTTATCA-TAAAGAGGAGATTATGTTTATAGTGCCTA
323 CT-ATGCAAAAGAAAATCATCAATATCATTTAT-AGTAAAGAAGAGAATATGTTTAAAGTGCCTA
* * *
1366243 ATCACCAAATGAATGAAGATCATTACTAGAATCTATGTTTGAATCATTTGAGGCACGAACTTAGA
386 ATCACCAAATGAATGAAAATCATTACTAGAATCCATGTTTGAATCAGTTGAGGCACGAACTTAGA
* * *
1366308 CTTGATAAAAATTTATGGGAAGA
451 CTTGACAAAAATTGAAGGGAAGA
*** * *
1366331 AAGCCTTTC-T-TGCAAAGCCAAAGCATCAATATGTGGTATCCTA-AAGGGAAGACTATGTTTAT
1 AAGCCTTTCTTATG-AAA-CCAAAGCATCAATAAAAGGTAT-CTATATGAGAAGACTATGTTTAT
** * * * *
1366393 GGTGCCTAATTCAAAAAAGATTGGGGATTAGTATGAGTATTCATATTTTTTTTATTTAAGAGACA
63 GGTGCCTAATTCGGAAAAGAATGGGGATTAGTATGAGTATTCAT-TTTGTCTTATTTAAGAAACA
* * *
1366458 AACTTTGATT-T-T----ATCGAT-CGAAA-AAAAGCTTTTCTTGCAACACTAAAGCATTACTGT
127 AACTTTGATTCTATCAAAAACGATGC-AAAGAAAAGCTTTTCTTGCAACACCAAAGCATTAATGT
* * * *
1366515 CAGGTATTCTAATGAAGGGAATGCGTTTTGGCTTCCCAAACTTGAAATGAATGGAGACTGTTACG
191 CATGTATCCTAATGAAGGGAATGCGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACG
* * * * *
1366580 AGAATCTATGCTCGTTTTAGTT-ATGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAT
256 AGAATGT-TGCTTGTTTTATTTAAGGGATGAACTTTGATTTTAAGG-AAATAGGGCAAAT
1366639 TAAGATTATG
Statistics
Matches: 686, Mismatches: 83, Indels: 38
0.85 0.10 0.05
Matches are distributed among these distances:
468 36 0.05
469 103 0.15
470 8 0.01
474 3 0.00
475 11 0.02
476 503 0.73
477 19 0.03
478 3 0.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (473 bp):
AAGCCTTTCTTATGAAACCAAAGCATCAATAAAAGGTATCTATATGAGAAGACTATGTTTATGGT
GCCTAATTCGGAAAAGAATGGGGATTAGTATGAGTATTCATTTTGTCTTATTTAAGAAACAAACT
TTGATTCTATCAAAAACGATGCAAAGAAAAGCTTTTCTTGCAACACCAAAGCATTAATGTCATGT
ATCCTAATGAAGGGAATGCGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAAT
GTTGCTTGTTTTATTTAAGGGATGAACTTTGATTTTAAGGAAATAGGGCAAATAAAAAATTTCTA
TGCAAAAGAAAATCATCAATATCATTTATAGTAAAGAAGAGAATATGTTTAAAGTGCCTAATCAC
CAAATGAATGAAAATCATTACTAGAATCCATGTTTGAATCAGTTGAGGCACGAACTTAGACTTGA
CAAAAATTGAAGGGAAGA
Found at i:1368196 original size:476 final size:474
Alignment explanation
Indices: 1366647--1370255 Score: 4009
Period size: 476 Copynumber: 7.7 Consensus size: 474
1366637 ATTAAGATTA
* * * *
1366647 TGTTTATAGCGCCTAATCACCAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCCTTTG
1 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
* * * * * * *** *
1366712 AGGCATGAACTTAAATTTTTCAAAAATTGATGGGTAAAAAGCATTTCTTGTAAAACTAAAGCATC
66 AGGCACGAACTTAGA-CTTTCTAAAATTGGTGGGTAAAAAGCCTTTCTTACGAAACCAAAGCATC
* * * *
1366777 GATATAAGGCATCCCT-ATGAGAAGACTATGTTTATGGTGTCT-AATCTGGAAAAGAAT-GGGAT
130 AATATGAGGTAT-CCTAATGAGAAGACTATGTTTATGGTGCCTAAAT-TGGAAAAGAATGGGGAT
* * * * *
1366839 TAGTATGAGTATTTATGTTTATCATATTTAAGAAACAAACTTTGATTCTATCAAAAATGATGGAA
193 TAGTATGAGTATTCATGTTTGTCTTATTTAAGAAACAAACTTTGATTCTATCAAAAACGGTGGAA
* * * *
1366904 AGAAAAGCTTTTATTGCAACACCAAAGCATTAATGTCATGCATCTTAATGAAGGGAATGTGTTTT
258 AGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTT
* * * * **
1366969 TTTGTTCCCAATCTTGAATAAGAATGGAGAATATTA-TAGGAATTAATGCTTG-CTTATTTAAAG
322 TTGGTTCCCAATCTTGAA-AAGAATGGAGACTGTTACGA-GAATCGATGCTTGTCTTATTT-AAG
* * * *
1367032 GTTGAACTTTGATTTTTAA-GAAAGTAGGGCAAAGAAAAG-TTTTCAATGCCAAACAAAATCATC
384 GATGAACTTTGA-TTTTAAGGAAAATAGGGCAAAGAAAAGATTTT-AATGCAAAAGAAAATCATC
* * * *
1367095 AATACCGTTTATCCTAATGAGAAGAAGG
447 AATATCATTTATCCTAATGAGGAGAATG
* * *
1367123 TGTTTATAGTGCTTAAACACAAAATGAATGAAGACCATTACTAGAAT-CATTGTTTGTCTCATTT
1 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA-TGTTTGTCTCATTT
* * * *
1367187 GAGGCACAAACTTAGACTTTATAAAAATTGGTGGGTAAATAGCCTTTCTTACAAAACCAAAGCAT
65 GAGGCACGAACTTAGACTTTCT-AAAATTGGTGGGTAAAAAGCCTTTCTTACGAAACCAAAGCAT
* * * * * *
1367252 CAACATAAGGTATCCTAATGAAAAGACTATGTTTATGGTGCCT-AATCCGGAAAAGAATGAGGAA
129 CAATATGAGGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAAT-TGGAAAAGAATGGGGAT
* ** * * * *
1367316 TAGTATGAGTTTTTGTTTTTGTCTTATTTAAGAAACAAACATTGATTCTATAAAAAATGGTGGAA
193 TAGTATGAGTATTCATGTTTGTCTTATTTAAGAAACAAACTTTGATTCTATCAAAAACGGTGGAA
* * * *
1367381 AGAAAAGCTTTTCTTGCAACACCAAAGCATTAATGTCATGTTTCCTAATGAAGGGATTGCG-TTT
258 AGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTT
* * * ** *
1367445 TGGCTTCTCAATCTTGAAAAGAATGGTGACTGTTACCAGAATCGATGCTCAT-TTTTTTAAGAGA
323 TGG-TTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAG-GA
* *
1367509 TGAACTTTGATTTTAAGGAAAATAGGGCAAATAAAAGATTTTCATGCAAAAGAAAATCATCAATA
386 TGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTAATGCAAAAGAAAATCATCAATA
* *
1367574 TCATTTATCGTAAAGAGGAGAATG
451 TCATTTATCCTAATGAGGAGAATG
* * * * *
1367598 TGTTTATAGTGCCTAATCACCAAATGAATGAAAATCATTGCTAGAATCCAGGTTTGTCTTATTTG
1 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
* * * * * *
1367663 GGGCTCGAACTTAGACTTTACAAAAATTAGTGGGTAAAAAACCTTTCTTATGAAACCAAAGCATC
66 AGGCACGAACTTAGACTTT-CTAAAATTGGTGGGTAAAAAGCCTTTCTTACGAAACCAAAGCATC
* * * * * *
1367728 AAAATGAGGCATCCTTACGAGAAGACTATGTCTATGCTGCCTAAATTGGAAAAGAATGGGGATTA
130 AATATGAGGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAATTGGAAAAGAATGGGGATTA
* * *
1367793 ATATGAGTATTCATATTTGTCTTATTTAAGAAACAAACTTTGATTCTACCAAAAACGGTGGAAAG
195 GTATGAGTATTCATGTTTGTCTTATTTAAGAAACAAACTTTGATTCTATCAAAAACGGTGGAAAG
* * **
1367858 AAAAGCTTTTCTTGCAACACCAAAGCATGAATGTCATGTATCCTAATAAAGTAAATGTG-TTTTG
260 AAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTG
* * **
1367922 GCTTCCCAATCAT-AAAAGGAATGGAGACTGTTGCGAGAATCGATGCTTAACTTATTTAAGTGAT
325 G-TTCCCAATCTTGAAAA-GAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAG-GAT
* * *
1367986 GGACTTTGATTTTAGGGAAAATAGGGCAAAGAAAAGATTTTAATGCAAAATAAAATCATCAATAT
387 GAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTAATGCAAAAGAAAATCATCAATAT
*
1368051 CATTTATCCTAAAGAGGAGAATG
452 CATTTATCCTAATGAGGAGAATG
* * * *
1368074 TGTTTATAATGCCTAATCACCAAAGGAATGAAGATCATTACTAGAATCCATGTTTGTCTCTTTTG
1 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
* * *
1368139 AGGTACGAACTTAGACTTTCCTAAAATTGGTGGGTAAAACGCCTTTCTTGCGAAACCAAAGCATC
66 AGGCACGAACTTAGACTTT-CTAAAATTGGTGGGTAAAAAGCCTTTCTTACGAAACCAAAGCATC
* * *
1368204 AATATGAGGTATCCTAAAGA-ATAGACTATGTTTATGGTGCCTAATTTAGAAAAGAATGGGGATT
130 AATATGAGGTATCCTAATGAGA-AGACTATGTTTATGGTGCCTAAATTGGAAAAGAATGGGGATT
* * * *
1368268 AGTATGAGTATTCATGTTTGTCTTATTTAAGAAACAAACTTTGGTTTTA-CAAAAAATGGTAGAA
194 AGTATGAGTATTCATGTTTGTCTTATTTAAGAAACAAACTTTGATTCTATC-AAAAACGGTGGAA
** * *
1368332 AGAAAAGCTTTTCTTGTGACACCAAAGCATAAATCTCATGTATCCTAA-GAAAGGGAATGTGTTT
258 AGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATG-AAGGGAATGTGTTT
* * * * *
1368396 TTAGTTCTCAATCCTGAAAAAGAATGGCGAC-GATTACAAGAATCGATGCTTGTCTTATTTAAGG
322 TTGGTTCCCAATCTTG-AAAAGAATGGAGACTG-TTACGAGAATCGATGCTTGTCTTATTTAA-G
* ** * * *
1368460 GATG-ACTTTGATTTTAAGAAAAATAGACCAAAGAAAAGATTTTAGTGTAAAAGAAAATAATCAA
384 GATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTAATGCAAAAGAAAATCATCAA
*
1368524 TATCATTTATCCTAATGAGGAGAATA
449 TATCATTTATCCTAATGAGGAGAATG
* * *
1368550 TGTTTACAGTGCCTAATCACAAAATGATTGAAGA-CGGTTACTAGAATCCATGTTTG-CGTCATT
1 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATC-ATTACTAGAATCCATGTTTGTC-TCATT
* * * *
1368613 CGAGGCACGAACTTAGACTTTATAAAATTTGGTGGGTAAAAAGCCTTTTTTACGGAACCAAAGCA
64 TGAGGCACGAACTTAGACTTTCTAAAA-TTGGTGGGTAAAAAGCCTTTCTTACGAAACCAAAGCA
* * * **
1368678 TCAATTTGAGGTATCCTAATGAGAAGACTATGTTTATGCTACGGC-ATCCTT--AAAAGAATGGG
128 TCAATATGAGGTATCCTAATGAGAAGACTATGTTTATGGT--GCCTA-AATTGGAAAAGAATGGG
*
1368740 GATT-GATATGAGTATTCACGTTTTGTCTTATTTAAGAAACAAACTTTGATTCTATCAAAAACGG
190 GATTAG-TATGAGTATTCATG-TTTGTCTTATTTAAGAAACAAACTTTGATTCTATCAAAAACGG
* *
1368804 TGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGT
253 TGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGT
* * * * * *
1368869 GTTTTTGGTTCCCAATCATGAAAAGAATGGAGACTATTTCGAGAATTGTTGCTTGTCTTATTTAT
318 GTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAA
* *
1368934 GGCAAGAACTTTGATTTTAAGG---A-A---C--------------AATGCTAAAGAAAATCATC
383 GG-ATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTAATGCAAAAGAAAATCATC
* * *
1368978 AATATC-TCTTATACTTATGAGAAGAATG
447 AATATCAT-TTATCCTAATGAGGAGAATG
* * *
1369006 TGTTTATAGTGCCTAATCACAAAATGAATGAAGACCATTACTAGAAT---T-TGTGGC-C---TG
1 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
* *
1369063 A---AC--A--TAGACTTTATAAAAGTTGGTGGGTAAATAGCCTTTCTTACGAAACCAAAGCATC
66 AGGCACGAACTTAGACTTTCTAAAA-TTGGTGGGTAAAAAGCCTTTCTTACGAAACCAAAGCATC
* * * * * **
1369121 AATATAAGGTATCTTAAGGAGAAGACTATATTTATGGTGCCT-AATCTTGAAAATTATGGGGATT
130 AATATGAGGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAAT-TGGAAAAGAATGGGGATT
* * *
1369185 AGTTTGAGTATTCATGTTTGTCTTATTTAAAAAACAAACTTTGATTCTATCAAAAACGGTGAAAA
194 AGTATGAGTATTCATGTTTGTCTTATTTAAGAAACAAACTTTGATTCTATCAAAAACGGTGGAAA
*
1369250 GAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGTGAATGTG-TTTT
259 GAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTT
* * * ** * *
1369314 GGCTTCCCAATCTTTAAAAGAAAGGAGACTATTGTGAAAATCGATGCTTGGCTTATTTAAGTGAT
324 GG-TTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAG-GAT
* * * * * *
1369379 GAACTTTGATTTTAGGGAAAATAAGGCAAAG-AAATATTTCAATG-AAGAATAAAATTATCAATA
387 GAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTAATGCAA-AAGAAAATCATCAATA
* *
1369442 TCATTTACCCTAAAGAGGAGAATG
451 TCATTTATCCTAATGAGGAGAATG
* * * * * *
1369466 TGTTTATAGTGCCAAATCACCAAAGGAATGAAGATCATTATTGGAATCCATGTTTGTCTCTTTTG
1 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
* * * * * *
1369531 AGGTACAAACCTAGACTTTCCTAAAATTGGTGCGTAAAACGCCTTTCTTGCGAAACCAAAGCATC
66 AGGCACGAACTTAGACTTT-CTAAAATTGGTGGGTAAAAAGCCTTTCTTACGAAACCAAAGCATC
* * * *
1369596 AATATGAGGTATCCTAAAGA-ATAGACTATGTTTATGGTGCCTAATTTAGAAAAGAACGGGGATT
130 AATATGAGGTATCCTAATGAGA-AGACTATGTTTATGGTGCCTAAATTGGAAAAGAATGGGGATT
* * *
1369660 AGTATGAGTATTCATGTTTGTCTTATTTAAGAAACAAACTTTGATTTTA-CAAAAAATGGTAGAA
194 AGTATGAGTATTCATGTTTGTCTTATTTAAGAAACAAACTTTGATTCTATC-AAAAACGGTGGAA
** * *
1369724 AGAAAAGCTTTTCTTGTGACACCAAAGCATAAATCTCATGTATCCTAA-GAAAGGGAATGTGTTT
258 AGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATG-AAGGGAATGTGTTT
* * *
1369788 TTGGTTCTCAAT-TCTGAAAAAGAATGGCGAC-GATTACAAGAATCGATGCTTGTCTTATTTAAG
322 TTGGTTCCCAATCT-TG-AAAAGAATGGAGACTG-TTACGAGAATCGATGCTTGTCTTATTTAA-
* * * *
1369851 GGATG-ACTTTGATTTTAAGGAAAATAGAGCAAAGAAAAGATTTCAGTGTAAAAGAAAATCATCA
383 GGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTAATGCAAAAGAAAATCATCA
*
1369915 ATATCATTTATCCTAATGAGGAGAATA
448 ATATCATTTATCCTAATGAGGAGAATG
* * * * *
1369942 TGTTTACAGTGCCTAATCACAAAATGATTGAAGACCGTTACTAGAATCCATGTTTG-CGTCATTC
1 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC-TCATTT
* * * * *
1370006 GAGGCACGAGCTTAGACTTACGAAAAATTGGTGGGTAAAAAGGCTTTTTTACGAAACCAAAGCAT
65 GAGGCACGAACTTAGACTTTC-TAAAATTGGTGGGTAAAAAGCCTTTCTTACGAAACCAAAGCAT
* ** **
1370071 CAATATGAGGTATCCTAATGAGAAGACTATGTTTATGGTGCCGAACGCT-GAAAAGAATAAGGAT
129 CAATATGAGGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAA-ATTGGAAAAGAATGGGGAT
* * * *
1370135 TAGTATAAGTATTCATGATTATCTTATTTAA-AAGACAAACTTTGATTCTATTAAAAACGGTGGA
193 TAGTATGAGTATTCATGTTTGTCTTATTTAAGAA-ACAAACTTTGATTCTATCAAAAACGGTGGA
* * *
1370199 AAGAAAAGCTTTTCTTACGACACTAAAGCATCAATGTCATGTATCCTAATGAAGGGA
257 AAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGA
1370256 GACAGTTACA
Statistics
Matches: 2660, Mismatches: 370, Indels: 206
0.82 0.11 0.06
Matches are distributed among these distances:
438 1 0.00
439 9 0.00
440 169 0.06
441 108 0.04
442 1 0.00
443 2 0.00
444 1 0.00
445 2 0.00
447 1 0.00
448 2 0.00
451 1 0.00
452 3 0.00
453 2 0.00
455 1 0.00
456 79 0.03
457 1 0.00
459 1 0.00
460 76 0.03
461 1 0.00
463 1 0.00
464 4 0.00
465 1 0.00
468 3 0.00
470 1 0.00
471 2 0.00
473 2 0.00
474 18 0.01
475 669 0.25
476 1194 0.45
477 293 0.11
478 11 0.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (474 bp):
TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
AGGCACGAACTTAGACTTTCTAAAATTGGTGGGTAAAAAGCCTTTCTTACGAAACCAAAGCATCA
ATATGAGGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAATTGGAAAAGAATGGGGATTAG
TATGAGTATTCATGTTTGTCTTATTTAAGAAACAAACTTTGATTCTATCAAAAACGGTGGAAAGA
AAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGG
TTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGATGAAC
TTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTAATGCAAAAGAAAATCATCAATATCATT
TATCCTAATGAGGAGAATG
Found at i:1370298 original size:916 final size:888
Alignment explanation
Indices: 1368429--1370425 Score: 2086
Period size: 916 Copynumber: 2.2 Consensus size: 888
1368419 ATGGCGACGA
* * * * *
1368429 TTACAAGAATCGATGCTTGTCTTATTTAAGGGATG-ACTTTGATTTTAAGAAAAAT-AGACCAAA
1 TTACAAGAATCGAGGCTCGTTTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAG-GCAAA
* * * * * *
1368492 GAAAAGATTTTAGTGTAAAAGAAAATAATCAATATCATTTATCCTAATGAGGAGAATATGTTTAC
65 GAAAAGATTTCAATGCAAAAGAAAATAATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTAT
* *
1368557 AGTGCCTAATCACAAAATGATTGAAGA-CGGTTACTAGAATCCATGTTTGCGTCATTCGAGGCAC
130 AGTGCCTAATCACAAAATGAATGAAGATC-ATTACTAGAATCCATGTTTGCGTCATTCGAGGCAC
* * * * * *
1368621 GAACTTAGACTTTATAAAATTTGGTGGGTAAAAAGCCTTTTTTACGGAACCAAAGCATCAATTTG
194 AAACCTAGACTTTATAAAATTTGGTGCGTAAAAAGCCTTTCTTACGAAACCAAAGCATCAATATG
* * * *
1368686 AGGTATCCTAATGAGAAGACTATGTTTATGCTACGGCATCCTTAAAAGAATGGGGATTGATATGA
259 AGGTATCCTAAAGAGAAGACTATGTTTATGCTACCGAAT-CTTAAAAGAACGGGGATTGATATGA
*
1368751 GTATTCACGTTTTGTCTTATTTAAGAAACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAG
323 GTATTCACGTTTTGTCTTATTTAAGAAACAAACTTTGATTCTATCAAAAACGGTAGAAAGAAAAG
* *
1368816 CTTTTCTTACGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCC
388 CTTTTCTTACGACACCAAAGCATAAATCTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCC
* * * * * *
1368881 CAATCATGAAAAGAATGGAGACTATTTCGAGAATTGTTGCTTGTCTTATTTATGGCAAGAACTTT
453 CAATCATGAAAAGAATGGAGACGATTACAAGAATCGATGCTTGTCTTATTTAAGGCAAGAACTTT
* *
1368946 GATTTTAAGGAACAATGCTAAAGAAAATCATCAATATCTCTTATACTTATGAGAAGAATGTGTTT
518 GATTTTAAGGAACAATGCTAAAGAAAATCATCAATATCTCTTATACTAATGAGAAGAATATGTTT
*
1369011 ATAGTGCCTAATCACAAAATGAATGAAGACCATTACTAGAATTTGTGGCCTGAACATAGACTTTA
583 ACAGTGCCTAATCACAAAATGAATGAAGACCATTACTAGAATTTGTGGCCTGAACATAGACTTTA
* * * *
1369076 TAAAAGTTGGTGGGTAAATAGCCTTTCTTACGAAACCAAAGCATCAATATAAGGTATCTTAAGGA
648 GAAAAATTGGTGGGTAAAAAGCCTTTCTTACGAAACCAAAGCATCAATATAAGGTATCCTAAGGA
* * ** ** * * * *
1369141 GAAGACTATATTTATGGTGCCTAATCTTGAAAATTATGGGGATTAGTTTGAGTATTCATGTTTGT
713 GAAGACTATATTTATGGTGCCGAATCCTGAAAAGAATAAGGATTAGTATAAGTATTCATGATTAT
*
1369206 CTTATTTAAAAAACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCAACAC
778 CTTATTTAAAAAACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTACAACAC
* * *
1369271 CAAAGCATCAATGTCATGTATCCTAATGAAGTGAATGTGTTTTGGCTTCCCAATCT
843 CAAAGCATCAATGTCATGTATCCTAATGAAG-G-A-GTG---TAG---CACAA-CG
* * * * *
1369327 TTAAAAGAAAGGAGACTATTGTGAAAATCGATGCTTGGCTTATTTAAGTGATGAACTTTGATTTT
1 TTACAAG--A--A-TCGA--G-G---CTC---G-TT---TTATTTAAGGGATGAACTTTGATTTT
* * * * *
1369392 AGGGAAAATAAGGCAAAG-AAATATTTCAATG-AAGAATAAAATTATCAATATCATTTACCCTAA
48 AAGGAAAATAAGGCAAAGAAAAGATTTCAATGCAA-AAGAAAATAATCAATATCATTTATCCTAA
* * * * *
1369455 AGAGGAGAATGTGTTTATAGTGCCAAATCACCAAAGGAATGAAGATCATTATTGGAATCCATGTT
112 AGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
* * * * * *
1369520 TGTC-TCTTTTGAGGTACAAACCTAGACTTTCCTAAAA-TTGGTGCGTAAAACGCCTTTCTTGCG
177 TG-CGTCATTCGAGGCACAAACCTAGACTTT-ATAAAATTTGGTGCGTAAAAAGCCTTTCTTACG
* * *
1369583 AAACCAAAGCATCAATATGAGGTATCCTAAAGA-ATAGACTATGTTTATGGTGCCTAAT-TTAGA
240 AAACCAAAGCATCAATATGAGGTATCCTAAAGAGA-AGACTATGTTTATGCTACCGAATCTT--A
* *
1369646 AAAGAACGGGGATT-AGTATGAGTATTCATG-TTTGTCTTATTTAAGAAACAAACTTTGATTTTA
302 AAAGAACGGGGATTGA-TATGAGTATTCACGTTTTGTCTTATTTAAGAAACAAACTTTGATTCTA
* **
1369709 -CAAAAAATGGTAGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATAAATCTCATGTATCCTAA-
366 TC-AAAAACGGTAGAAAGAAAAGCTTTTCTTACGACACCAAAGCATAAATCTCATGTATCCTAAT
* *
1369772 GAAAGGGAATGTGTTTTTGGTTCTCAATTC-TGAAAAAGAATGGCGACGATTACAAGAATCGATG
430 G-AAGGGAATGTGTTTTTGGTTCCCAA-TCATG-AAAAGAATGGAGACGATTACAAGAATCGATG
* * *
1369836 CTTGTCTTATTTAAGGGATG-ACTTTGATTTTAAGGAAAATAGAGCAAAGAAAAGATTTCAGTGT
492 CTTGTCTTATTTAAGGCAAGAACTTTGATTTTAAGG-----A-A-C-------A-A--T--G-CT
* *
1369900 AAAAGAAAATCATCAATATCAT-TTATCCTAATGAGGAGAATATGTTTACAGTGCCTAATCACAA
537 -AAAGAAAATCATCAATATC-TCTTATACTAATGAGAAGAATATGTTTACAGTGCCTAATCACAA
* * * *
1369964 AATGATTGAAGACCGTTACTAGAATCCATGTTTGCGTCATTCGAGGCACGAGCTTAGAC-TTACG
600 AATGAATGAAGACCATTACTAGAAT---T-TGTG-G-C-CT-GA---AC-A---TAGACTTTA-G
* * * *
1370028 AAAAATTGGTGGGTAAAAAGGCTTTTTTACGAAACCAAAGCATCAATATGAGGTATCCTAATGAG
649 AAAAATTGGTGGGTAAAAAGCCTTTCTTACGAAACCAAAGCATCAATATAAGGTATCCTAAGGAG
*
1370093 AAGACTATGTTTATGGTGCCGAA-CGCTGAAAAGAATAAGGATTAGTATAAGTATTCATGATTAT
714 AAGACTATATTTATGGTGCCGAATC-CTGAAAAGAATAAGGATTAGTATAAGTATTCATGATTAT
* * * *
1370157 CTTATTTAAAAGACAAACTTTGATTCTATTAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACAC
778 CTTATTTAAAAAACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTACAACAC
*
1370222 TAAAGCATCAATGTCATGTATCCTAATGAA-G-G-G-AG-AC-A-G
843 CAAAGCATCAATGTCATGTATCCTAATGAAGGAGTGTAGCACAACG
* * *
1370261 TTACAAGAATCGAGGCTCGTTTTATTTGAGGGATGAACTTTGATTTTAATGAAAATAGGGCAAAG
1 TTACAAGAATCGAGGCTCGTTTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAG
*
1370326 AAAAGATTTCAAAGCAAAAGAAAATCAA-CAATATCATTTATCC-AAACGAGGAGAATGTGTTTA
66 AAAAGATTTCAATGCAAAAGAAAAT-AATCAATATCATTTATCCTAAA-GAGGAGAATGTGTTTA
*
1370389 TAGTGCCTAATCTCAAAATGAATGAAGATCATTACTA
129 TAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
1370426 ATCTAATATC
Statistics
Matches: 902, Mismatches: 122, Indels: 131
0.78 0.11 0.11
Matches are distributed among these distances:
898 6 0.01
900 1 0.00
902 1 0.00
903 2 0.00
906 1 0.00
909 1 0.00
912 1 0.00
913 1 0.00
914 4 0.00
915 132 0.15
916 308 0.34
917 109 0.12
918 5 0.01
919 2 0.00
920 2 0.00
921 1 0.00
922 1 0.00
923 2 0.00
926 1 0.00
927 1 0.00
929 3 0.00
930 2 0.00
932 2 0.00
934 7 0.01
935 1 0.00
936 80 0.09
937 2 0.00
939 1 0.00
940 3 0.00
941 2 0.00
942 1 0.00
943 1 0.00
944 2 0.00
945 1 0.00
946 1 0.00
947 2 0.00
948 1 0.00
949 1 0.00
950 4 0.00
951 203 0.23
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (888 bp):
TTACAAGAATCGAGGCTCGTTTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAG
AAAAGATTTCAATGCAAAAGAAAATAATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATA
GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGCGTCATTCGAGGCACAA
ACCTAGACTTTATAAAATTTGGTGCGTAAAAAGCCTTTCTTACGAAACCAAAGCATCAATATGAG
GTATCCTAAAGAGAAGACTATGTTTATGCTACCGAATCTTAAAAGAACGGGGATTGATATGAGTA
TTCACGTTTTGTCTTATTTAAGAAACAAACTTTGATTCTATCAAAAACGGTAGAAAGAAAAGCTT
TTCTTACGACACCAAAGCATAAATCTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAA
TCATGAAAAGAATGGAGACGATTACAAGAATCGATGCTTGTCTTATTTAAGGCAAGAACTTTGAT
TTTAAGGAACAATGCTAAAGAAAATCATCAATATCTCTTATACTAATGAGAAGAATATGTTTACA
GTGCCTAATCACAAAATGAATGAAGACCATTACTAGAATTTGTGGCCTGAACATAGACTTTAGAA
AAATTGGTGGGTAAAAAGCCTTTCTTACGAAACCAAAGCATCAATATAAGGTATCCTAAGGAGAA
GACTATATTTATGGTGCCGAATCCTGAAAAGAATAAGGATTAGTATAAGTATTCATGATTATCTT
ATTTAAAAAACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTACAACACCAA
AGCATCAATGTCATGTATCCTAATGAAGGAGTGTAGCACAACG
Found at i:1381464 original size:59 final size:58
Alignment explanation
Indices: 1381356--1381526 Score: 333
Period size: 59 Copynumber: 2.9 Consensus size: 58
1381346 ACGAACATTG
1381356 ATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCCTGCAACACCAAAGCATCAAAGTC
1 ATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCCTGCAACACCAAAGCATCAAAGTC
1381414 ATTCTATCAAAAACAGTGGAAAGAAAAAGCTTTTCCTGCAACACCAAAGCATCAAAGTC
1 ATTCTATCAAAAACAGTGGAAAG-AAAAGCTTTTCCTGCAACACCAAAGCATCAAAGTC
1381473 ATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCCTGCAACACCAAAGCATCAA
1 ATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCCTGCAACACCAAAGCATCAA
1381527 TTTCATGTAA
Statistics
Matches: 112, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
58 54 0.48
59 58 0.52
ACGTcount: A:0.44, C:0.22, G:0.13, T:0.20
Consensus pattern (58 bp):
ATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCCTGCAACACCAAAGCATCAAAGTC
Found at i:1382362 original size:475 final size:474
Alignment explanation
Indices: 1381473--1382519 Score: 1469
Period size: 475 Copynumber: 2.2 Consensus size: 474
1381463 CATCAAAGTC
* * * * *
1381473 ATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCCTGCAACACCAAAGCATCAATTTCATGTAAC
1 ATTCTATCAAAAACTGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* * * * * * *
1381538 CTAATGAAGAGAAAGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGA
66 CTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAAAAGGGAGAATATTACGAGAATCGA
* * * *
1381603 TGCTTGTCTTATTTAATGTATGAATTTTAATTTAAAAGAAACTAGGGAAATAAAAGATTCCATGC
131 TGCTTGTCTTATTTAATGGATGAATTTGAATTTAAAAGAAACTAGGGAAAAAAAAAATTCCATGC
* *
1381668 AAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAAAGTGTTTTTAGTGCCCAATCACCAA
196 AAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAAAGTGTTTATAATGCCCAATCACCAA
* * *
1381733 ATAAATGAAGATCATTCCAAGAATCCATGTTTGTCTCATTTGAGATATGAACTTAAACTTTACAA
261 ATAAATGAAGATCATTACAAGAATCCATGTTTGTCTCATTTGAGACATGAACTTAAACTCTACAA
1381798 AAATTAGTCAAAAAAATGCCTTTCTTGAAAACCCAAAACATCAGTATCATGTATCCTAATGAGAA
326 AAATTAGTCAAAAAAATGCCTTTCTTGAAAACCCAAAACATCAGTATCATGTATCCTAATGAGAA
** * * * * *
1381863 GCCCATATTTGTGATGCCTAATCTTGAAAAGATTAGGGATTACTATGACTGTTCTTGTTTGTATA
391 AACCATATTTATGATACCTAATCTTGAAAAGAATAGGGATTACTATGACTATTCTTATTTGTATA
*
1381928 ATTTAAGAGATAAACTTTG
456 ATTTAAGAGACAAACTTTG
1381947 ATTCTATCAAAAACTGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
1 ATTCTATCAAAAACTGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* *
1382012 CTAATGAAGGGATTGTGTTTTTGGTTCCCAATCTT-AAAAAAAGGGAGAATATTACGAGCATCGA
66 CTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAAAAGGGAGAATATTACGAGAATCGA
* * *
1382076 TGCTTGTCTTATTT-ATGGGATGAACTTTGATTTTATGAA-AAA-TTGGGTAAAGAAAAAAATTT
131 TGCTTGTCTTATTTAAT-GGATGAA-TTTGAATTTA-AAAGAAACTAGGG-AAA-AAAAAAA-TT
* * * * * * *
1382138 ACC-TGCAAAA-AACATCCTCAATGTCGTTTATCTTAATAAGGAGAATGTGTTTATAATGCCTAA
190 -CCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAAAGTGTTTATAATGCCCAA
* * * * * *
1382201 TCACCAAATGAATGTAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCATGAACTTAGAC
254 TCACCAAATAAATGAAGATCATTACAAGAATCCATGTTTGTCTCATTTGAGACATGAACTTAAAC
* *
1382266 TCTACAAAAATTAGTCAAAAAAATGCCTTTCTTGCAAACCCAAAACATCAGTATCGTGTATCCTA
319 TCTACAAAAATTAGTCAAAAAAATGCCTTTCTTGAAAACCCAAAACATCAGTATCATGTATCCTA
* * * *
1382331 ATGAGAAAACTATGTTTATGATACCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCTTAT
384 ATGAGAAAACCATATTTATGATACCTAATCTTGAAAAGAATAGGGATTACTATGACTATTCTTAT
1382396 TTGTATAATTTAAGAGACAAACTTTG
449 TTGTATAATTTAAGAGACAAACTTTG
* *
1382422 ATTCTATAAAAAACTGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAGTGTCATGTATC
1 ATTCTATCAAAAACTGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
*
1382487 CTAATGAAAGGAATGTG-TTTTGGCTTCCCAATC
66 CTAATGAAGGGAATGTGTTTTTGG-TTCCCAATC
1382520 CTAATGAGGA
Statistics
Matches: 508, Mismatches: 57, Indels: 15
0.88 0.10 0.03
Matches are distributed among these distances:
472 2 0.00
473 47 0.09
474 112 0.22
475 336 0.66
476 9 0.02
477 2 0.00
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.32
Consensus pattern (474 bp):
ATTCTATCAAAAACTGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
CTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAAAAGGGAGAATATTACGAGAATCGA
TGCTTGTCTTATTTAATGGATGAATTTGAATTTAAAAGAAACTAGGGAAAAAAAAAATTCCATGC
AAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAAAGTGTTTATAATGCCCAATCACCAA
ATAAATGAAGATCATTACAAGAATCCATGTTTGTCTCATTTGAGACATGAACTTAAACTCTACAA
AAATTAGTCAAAAAAATGCCTTTCTTGAAAACCCAAAACATCAGTATCATGTATCCTAATGAGAA
AACCATATTTATGATACCTAATCTTGAAAAGAATAGGGATTACTATGACTATTCTTATTTGTATA
ATTTAAGAGACAAACTTTG
Found at i:1382372 original size:158 final size:158
Alignment explanation
Indices: 1381736--1382372 Score: 338
Period size: 158 Copynumber: 4.0 Consensus size: 158
1381726 TCACCAAATA
* * * * * * *
1381736 AATGAAGATCATTCCAAGAATCCATGTTTGTCTCATTTGAGATATGAACTTAAACTTTA-CAAAA
1 AATGTAGATCATTACTAGAATCCATGTTTGTCTTATTTGAG-GATGAACTTAGACTCTATCAAAA
* * *
1381800 ATTAGTCAAA-AAAATGCCTTTCTTGAAAACCCAAAACATCAGTATCATGTATCCTAATGAGAAG
65 ATTAGTCAAAGAAAA-GCCTTTCTTGCAAACCCAAAACATCAATATCATGTATCCTAATGAGAAA
* * * *
1381864 CCCATATTTGTGATGCCTAATCTTGAAAAG
129 ACTATGTTTATGATGCCTAATCTTGAAAAG
** * * * * * * * * *
1381894 -AT-TAG-GGATTACTATGACTGTTCTTGTTTGTATAATTTAAGAGATAAACTTTGATTCTATCA
1 AATGTAGATCATTACTA-GA--ATCCATGTTTGTCTTATTTGAG-GATGAACTTAGACTCTATCA
* * * * * *
1381956 AAAACT-GTGGAAAGAAAAGCTTTTCTTGC-GACACCAAAGCATCAATGTCATGTATCCTAATGA
62 AAAATTAGT-CAAAGAAAAGCCTTTCTTGCAAAC-CCAAAACATCAATATCATGTATCCTAATGA
** * * * * * * *
1382019 -AGGGATTGTGTTTTTGGTTCCCAATCTT-AAAAA
125 GA-AAACTATGTTTATGATGCCTAATCTTGAAAAG
* * * * * * * * * *
1382052 AAGGGAGAAT-ATTACGAGCATCGATGCTTGTCTTATTT-ATGGGATGAACTTTGATTTTATGAA
1 AATGTAG-ATCATTACTAGAATCCATGTTTGTCTTATTTGA--GGATGAACTTAGACTCTATCAA
* *** * * * * * * *
1382115 AAATTGGGT-AAAGAAAAAAATTTACCTGCAAA---AAACATCCTCAATGTCGTTTATCTTAATA
63 AAATT-AGTCAAAGAAAAGCCTTT-CTTGCAAACCCAAA-A-CATCAATATCATGTATCCTAATG
* * * *** *
1382176 AGGAGAA-TGTGTTTATAATGCCTAATCACCAAATG
124 A-GAAAACTATGTTTATGATGCCTAATCTTGAAAAG
1382211 AATGTAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCATGAACTTAGACTCTA-CAAAA
1 AATGTAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGG-ATGAACTTAGACTCTATCAAAA
* *
1382275 ATTAGTCAAA-AAAATGCCTTTCTTGCAAACCCAAAACATCAGTATCGTGTATCCTAATGAGAAA
65 ATTAGTCAAAGAAAA-GCCTTTCTTGCAAACCCAAAACATCAATATCATGTATCCTAATGAGAAA
*
1382339 ACTATGTTTATGATACCTAATCTTGAAAAG
129 ACTATGTTTATGATGCCTAATCTTGAAAAG
1382369 AATG
1 AATG
1382373 GGGATTAGTA
Statistics
Matches: 345, Mismatches: 102, Indels: 64
0.68 0.20 0.13
Matches are distributed among these distances:
155 5 0.01
156 7 0.02
157 20 0.06
158 176 0.51
159 116 0.34
160 15 0.04
161 6 0.02
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.32
Consensus pattern (158 bp):
AATGTAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGATGAACTTAGACTCTATCAAAAA
TTAGTCAAAGAAAAGCCTTTCTTGCAAACCCAAAACATCAATATCATGTATCCTAATGAGAAAAC
TATGTTTATGATGCCTAATCTTGAAAAG
Found at i:1382506 original size:159 final size:157
Alignment explanation
Indices: 1381830--1382506 Score: 384
Period size: 158 Copynumber: 4.3 Consensus size: 157
1381820 TCTTGAAAAC
* ** * *
1381830 CCAAAACATCAGTATCATGTATCCTAATGAGAAGCCCA--TATTTGTGATGCCTAATCTTGAAAA
1 CCAAAACATCAGTGTCATGTATCCTAATGA-AAG-GAATGTGTTTATGATGCCTAATCTTGAAAA
* * * * * *
1381893 GATTAGGGATTACTATGACTGTTCTTGTTTGTATAATTTAAGAGATAAACTTTGATTCTATCAAA
64 GAATGGGGATTATTATGAC-ATTCTTATTTGTATAATTTAAGAGACAAACTTTGATTCTATCAAA
1381958 AACTGTGGAAAGAAAAGCTTTTCTTGCGACA
128 AACTGTGGAAAGAAAAGCTTTTCTTGC-ACA
* * * * * * * *
1381989 CCAAAGCATCAATGTCATGTATCCTAATGAAGGGATTGTGTTTTTGGTTCCCAATCTT-AAAA-A
1 CCAAAACATCAGTGTCATGTATCCTAATGAAAGGAATGTGTTTATGATGCCTAATCTTGAAAAGA
* * * * * * * * ** * *
1382052 AAGGGAGAATATTACGAGCA-TC-GATGCTTGTCTTATTTATGGGATGAACTTTGATTTTATGAA
66 ATGGG-GATTATTATGA-CATTCTTAT--TTGTATAATTTAAGAGACAAACTTTGATTCTATCAA
* ** * *
1382115 AAATTG-GGTAAAGAAAAAAATTTACCTGCA-A
127 AAACTGTGG-AAAG-AAAAGCTTTTCTTGCACA
* * * * * * ***
1382146 --AAAACATCCTCAATGTCGTTTATCTTAAT-AAGGAGAATGTGTTTATAATGCCTAATCACCAA
1 CCAAAACA---TCAGTGTCATGTATCCTAATGAAAG-GAATGTGTTTATGATGCCTAATCTTGAA
* ** * * * * * * * * *
1382208 ATGAATGTAGATCATTACTAGA-ATCCATGTTTGTCTTATTT--GAGGCATGAACTTAGACTCTA
62 AAGAATGGGGATTATTA-T-GACATTCTTATTTGTATAATTTAAGAGACA--AACTTTGATTCTA
* * * *
1382270 -CAAAAATTAGT-CAAA-AAAATGCCTTTCTTGCAAA
123 TCAAAAACT-GTGGAAAGAAAA-GCTTTTCTTGCACA
* * * *
1382304 CCCAAAACATCAGTATCGTGTATCCTAATGAGAA--AACTATGTTTATGATACCTAATCTTGAAA
1 -CCAAAACATCAGTGTCATGTATCCTAATGA-AAGGAA-TGTGTTTATGATGCCTAATCTTGAAA
* *
1382367 AGAATGGGGATTAGTATGACTATTCTTATTTGTATAATTTAAGAGACAAACTTTGATTCTATAAA
63 AGAATGGGGATTATTATGAC-ATTCTTATTTGTATAATTTAAGAGACAAACTTTGATTCTATCAA
1382432 AAACTGTGGAAAGAAAAGCTTTTCTTGCGACA
127 AAACTGTGGAAAGAAAAGCTTTTCTTGC-ACA
*
1382464 CCAAAGCATCAGTGTCATGTATCCTAATGAAAGGAATGTGTTT
1 CCAAAACATCAGTGTCATGTATCCTAATGAAAGGAATGTGTTT
1382507 TGGCTTCCCA
Statistics
Matches: 376, Mismatches: 102, Indels: 80
0.67 0.18 0.14
Matches are distributed among these distances:
155 5 0.01
156 7 0.02
157 24 0.06
158 174 0.46
159 139 0.37
160 18 0.05
161 9 0.02
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.33
Consensus pattern (157 bp):
CCAAAACATCAGTGTCATGTATCCTAATGAAAGGAATGTGTTTATGATGCCTAATCTTGAAAAGA
ATGGGGATTATTATGACATTCTTATTTGTATAATTTAAGAGACAAACTTTGATTCTATCAAAAAC
TGTGGAAAGAAAAGCTTTTCTTGCACA
Found at i:1382765 original size:19 final size:18
Alignment explanation
Indices: 1382741--1382803 Score: 64
Period size: 19 Copynumber: 3.7 Consensus size: 18
1382731 AAACCGTAAC
1382741 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGT-T
1382760 TGTATCGATAC--AA---
1 TGTATCGATACATAAGTT
1382773 TGTATCGATACATAAGTTT
1 TGTATCGATACATAAG-TT
*
1382792 TGTATCGTTACA
1 TGTATCGATACA
1382804 ATGTATCGCT
Statistics
Matches: 37, Mismatches: 1, Indels: 12
0.74 0.02 0.24
Matches are distributed among these distances:
13 11 0.30
15 2 0.05
17 2 0.05
19 22 0.59
ACGTcount: A:0.32, C:0.13, G:0.17, T:0.38
Consensus pattern (18 bp):
TGTATCGATACATAAGTT
Found at i:1382778 original size:13 final size:13
Alignment explanation
Indices: 1382760--1382784 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1382750 ACATAAGTGT
1382760 TGTATCGATACAA
1 TGTATCGATACAA
1382773 TGTATCGATACA
1 TGTATCGATACA
1382785 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1382782 original size:32 final size:32
Alignment explanation
Indices: 1382741--1382811 Score: 124
Period size: 32 Copynumber: 2.2 Consensus size: 32
1382731 AAACCGTAAC
1382741 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
* *
1382773 TGTATCGATACATAAGTTTTGTATCGTTACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
1382805 TGTATCG
1 TGTATCG
1382812 CTACGAAGCT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.38
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:1382874 original size:13 final size:13
Alignment explanation
Indices: 1382856--1382883 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
1382846 ATTACTCAAA
1382856 TGTATCGATACAT
1 TGTATCGATACAT
1382869 TGTATCGATACAT
1 TGTATCGATACAT
1382882 TG
1 TG
1382884 ATCTTTTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1386969 original size:476 final size:475
Alignment explanation
Indices: 1386029--1394727 Score: 9859
Period size: 476 Copynumber: 18.3 Consensus size: 475
1386019 GTTACGATAA
** * *
1386029 TGCCTAATCATAAAATGAAA-GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGATACGA
1 TGCCTAATCACCAAAT-AAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACATGA
* * * * * * *
1386093 GCTTAGACTTTACAAAAATTGGTGAGAAAAAA-GCCTTTATTGCGAAGCCAAAACATCCATATGA
65 ACTTAGACTTTACAAAAATTAGTGA-AAAAAATGCCTTTCTTGCAAACCCAAAACATCAATATCA
** * * * * * * *
1386157 CATATTCTAATGAGAAGACTATGTTTATGGTGCCAAATCCTGAAAAGAATGGGAATTAGTATGAG
129 TGTATCCTAATGAGAAGACCATGTTTATGATGCCTAATCTTGAAAAGAATGGGGATTAGTATGAC
* * *
1386222 TATTCTTGTTTGTCTTATTTGAA-AGACAAACTTTGATTTTATCAAAAA-TGCTGGAAAGAAAAG
194 TATTCTTGTTTGTATAATTT-AAGAGACAAACTTTGATTCTATCAAAAACTG-TGGAAAGAAAAG
* * * *
1386285 CTATTCTTGCAACACCAAAGCATTAATGTCATGTATCCTAACGAAAGGAATGTGTTTTGGCTTCC
257 CTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCC
* * * * *
1386350 CAATCTTGCAATGAATGGAGACTATTACGACAATCGGTGCTTGTGTTTTTTAAGGGATGAACTTT
322 CAATCTTGCAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTT
* * *
1386415 GAGTTTAAGGAAAATAGGGC-AAGGAAAAGATTTTCATGCAAAAGAAAATCATCAATA-CTATTT
387 GATTTTAA-GAAAATAGGGCAAAGAAAAAGA-TTTCCTGCAAAAGAAAATCATCAATATC-ATTT
*
1386478 ATCCTAATAAGGAGAAAGTGTCTT-TAG
449 ATCCTAATGAGGAGAAAGTGT-TTATAG
*
1386505 TG-CTCAATCACCAAATAAATGAAGATCATTACTAGAATCGATGTTTGTCTCATTTGAGACATGA
1 TGCCT-AATCACCAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACATGA
* * *
1386569 ACATAGACTTTACAAAAATTAGTCAAAAAAATGCCTTTCTTGCAAACCCAAAACATCAGTATCAT
65 ACTTAGACTTTACAAAAATTAGTGAAAAAAATGCCTTTCTTGCAAACCCAAAACATCAATATCAT
* * * * *
1386634 GTATCCTAATGAGAAGCCCATGTTTGTGATGCCTAATCTTGAAATGAATAGGGATTACTATGACT
130 GTATCCTAATGAGAAGACCATGTTTATGATGCCTAATCTTGAAAAGAATGGGGATTAGTATGACT
* * ** *
1386699 GTTCTTGTTTATATAATTTAAGAGGTAAACTTTGATTCTATCAAAAACTGTGAAAAGAAAAGCTT
195 ATTCTTGTTTGTATAATTTAAGAGACAAACTTTGATTCTATCAAAAACTGTGGAAAGAAAAGCTT
* * * *
1386764 TTTTTGGCCACACCAAAGCATCAATGTCATGTATCTTAATGAAGGGATTGTGTTTTTGG-TTCCC
260 TTCTT-GCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTGGCTTCCC
* * * *
1386828 AATCTTG-AAAGAATGGAGAATGTTACGAGCATCGATGCTTGTCTTATTTATGGGATGAACTTTG
323 AATCTTGCAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTG
* * * * * *
1386892 ATTTTATAGAAAATTGGGTAAAGAAAAAAATTTACCTGCAAAA-AAAATCCTCAATGTCGTTTAT
388 ATTTTA-AGAAAATAGGGCAAAGAAAAAGATTT-CCTGCAAAAGAAAATCATCAATATCATTTAT
* * *
1386956 CTTAATGAGGAGAATGTGTTTATAA
451 CCTAATGAGGAGAAAGTGTTTATAG
* * * *
1386981 TGCCTAATCACCAAATAAATGTAGATCATTACTAGAATCCATGTTTATCTTATTTGAGGCATGAA
1 TGCCTAATCACCAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACATGAA
* * * * *
1387046 CTTAGACTCTATAAAAATTAGTCAAAAAAATGCCTTTCTTGCAAACCGAAAACATCAATATCGTG
66 CTTAGACTTTACAAAAATTAGTGAAAAAAATGCCTTTCTTGCAAACCCAAAACATCAATATCATG
* * *
1387111 TATCCTAATGAGAAAACTATGTTTATGATACCTAATCTTGAAAAGAATGGGGATTAGTATGACTA
131 TATCCTAATGAGAAGACCATGTTTATGATGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTA
* *
1387176 TTCTTATTTATATAATTTAAGAGACAAACTTTGATTCTATCAAAAACTGTGGAAAGAAAAGCTTT
196 TTCTTGTTTGTATAATTTAAGAGACAAACTTTGATTCTATCAAAAACTGTGGAAAGAAAAGCTTT
* * * *
1387241 TCTTGCGACACCAAAGCATTAGTGTCATGTATCCTAATGAAAGGAATGTGTTTTGGCTTCCCAAT
261 TCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAAT
* * * * *
1387306 CCTGCAATGAATGGAGACTATTACGAGAATCGATGCTTGTGTTTTTTAAGGGATGAACTTTGAGT
326 CTTGCAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATT
* * ** *
1387371 TTAAGGAAAATAGGGC-AAGGAGAAGATTTTTATGCAAAAGAAAATCATCAATATCATTTATCTT
391 TTAA-GAAAATAGGGCAAAGAAAAAGA-TTTCCTGCAAAAGAAAATCATCAATATCATTTATCCT
* *
1387435 AATAAGGAGAAAGTGTTTTTAG
454 AATGAGGAGAAAGTGTTTATAG
*
1387457 TGCCCAATCACCAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACATGAA
1 TGCCTAATCACCAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACATGAA
* * * * *
1387522 CTTAAACTTCACAAAAATTACTGAAAAAAATGCCTTTCTTCCAAACCCAAAACATCAGTATCATG
66 CTTAGACTTTACAAAAATTAGTGAAAAAAATGCCTTTCTTGCAAACCCAAAACATCAATATCATG
* * * * *
1387587 TATCCTAATGAGAAGCCCATATTTATGATGCCTAATCTTGAAAAGAATAGGGACTAGTATGACTG
131 TATCCTAATGAGAAGACCATGTTTATGATGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTA
* * * * *
1387652 TTCTTGTTTGCATAATTTAAGAGATAAACTTTGATTTTATCAAAAACTATGGAAAGAAAA-CCTT
196 TTCTTGTTTGTATAATTTAAGAGACAAACTTTGATTCTATCAAAAACTGTGGAAAGAAAAGCTTT
* * * *
1387716 TCTTGCGACACCAAAGCATCAATGTCATGTATCTTAATGAAGGTATTGTGTTTTTGG-TTCCCAA
261 TCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTGGCTTCCCAA
* **
1387780 TCTTG-AAAGAATGGAGAATGCTACGAGAATCGATGCTTGTCTTATTTATA-GGATGAACTTTGA
325 TCTTGCAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTA-AGGGATGAACTTTGA
* * *
1387843 TTTTATGAAAAATAGGGCAAAG--AAAGATTTCCTAGCAAAA-AAAATCCTCAATATTATTTATC
389 TTTTAAG-AAAATAGGGCAAAGAAAAAGATTTCCT-GCAAAAGAAAATCATCAATATCATTTATC
*
1387905 CTAAAGAGGAGAATA-TGTTTATAG
452 CTAATGAGGAGAA-AGTGTTTATAG
* * * * * * *
1387929 TGTCTAATCACAAAATAAGTGAAGATCTTTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAA
1 TGCCTAATCACCAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACATGAA
* ** * * * *
1387994 CTTAGACTTTACAAAAATTGGTGGGAAAAATACCTTTCTGGCAAAACCAAAACATCAATATCAAG
66 CTTAGACTTTACAAAAATTAGTGAAAAAAATGCCTTTCTTGCAAACCCAAAACATCAATATCATG
* * * *
1388059 TATCCTAATGAGAA-AACAGGTTTATGGTGCCTAATCTTGGAAAGAATGGGGATTAGTATGACTA
131 TATCCTAATGAGAAGACCATGTTTATGATGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTA
* * * *
1388123 TTCTTATTTGTATTATTTAAGAGATAAACTTTGATTCTATCAAAAAC-GATAG-AAGAAAAGGCT
196 TTCTTGTTTGTATAATTTAAGAGACAAACTTTGATTCTATCAAAAACTG-TGGAAAGAAAA-GCT
* * *
1388186 TTTCTTGCAACACCAAAGCATCAATGTCGTGTATCCTAATAAAGGAAATGTGTTTTGGCTTCCCA
259 TTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCA
* * * * * * *
1388251 ATCTTGAAAATAATGGAGTCTATTATGAGAA-CTGATGCTTATCTTATTTAAGGGATTAACTTCG
324 ATCTTGCAAAGAATGGAGACTATTACGAGAATC-GATGCTTGTCTTATTTAAGGGATGAACTTTG
* * * * * * *
1388315 ATTTTAAGAAATGTAGGGCATA-AAAAAGATTTCCATGTAAACGAAAATCATTAGTACCATTTAT
388 ATTTTAAGAAA-ATAGGGCAAAGAAAAAGATTTCC-TGCAAAAGAAAATCATCAATATCATTTAT
*
1388379 CCTAATGAGGAGAATGTGTTTATAG
451 CCTAATGAGGAGAAAGTGTTTATAG
** ** * *
1388404 TGCCTAATCATAAAATGAAA-GAAGATCATTACTAGAATCCATGTTTGTCTCATACGAGATACGA
1 TGCCTAATCACCAAAT-AAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACATGA
* * * * ** * * *
1388468 GCTTCGACTTTACAAAAATTGGTGAGAAAAAA-GCCTTTCTTACAAAGGCAAAACATCCACATGA
65 ACTTAGACTTTACAAAAATTAGTGA-AAAAAATGCCTTTCTTGCAAACCCAAAACATCAATATCA
** * * * * * * * *
1388532 CATATTCTAATAAGAAGACTATGTTTATGGTGCCAAATCCTGAAAAGAATGGGAATTAGTATGAG
129 TGTATCCTAATGAGAAGACCATGTTTATGATGCCTAATCTTGAAAAGAATGGGGATTAGTATGAC
* * * * * *
1388597 TATTCTTCTTTGTCTTATTTGAA-AGGCAAACTTTGATTTTATCAAAAA-TGGTGGAAAGGAAAG
194 TATTCTTGTTTGTATAATTT-AAGAGACAAACTTTGATTCTATCAAAAACT-GTGGAAAGAAAAG
* *
1388660 CTTTTCTTGCAACACCAAAGCATTAATGTCATGTATCCTAATGAAAGGAATGTGTTTTGGCTTCC
257 CTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCC
* * * * *
1388725 CAATCTTGCAATGAATGGAGACTATTATGAGAATCGTTGCTTGTGTTTTTTAAGGGATGAACTTT
322 CAATCTTGCAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTT
* * *
1388790 GAGTTTAAGGAAAATAGGGC-AAGGAAAAGATTTTCATGCAAAAGAAAATCATCAATA-CTATTT
387 GATTTTAA-GAAAATAGGGCAAAGAAAAAGA-TTTCCTGCAAAAGAAAATCATCAATATC-ATTT
*
1388853 ATCCTAATAAGGAGAAAGTGTCTT-TAG
449 ATCCTAATGAGGAGAAAGTGT-TTATAG
*
1388880 TG-CTCAATCACCAAATAAATGAAGATCATTACTAGAATCGATGTTTGTCTCATTTGAGACATGA
1 TGCCT-AATCACCAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACATGA
* * *
1388944 ACATAGACTTTACAAAAATTAGTCAAAAAAATGCCTTTCTTGCAAACCCAAAACATCAGTATCAT
65 ACTTAGACTTTACAAAAATTAGTGAAAAAAATGCCTTTCTTGCAAACCCAAAACATCAATATCAT
* * * * *
1389009 GTATCCTAATGAGAAGCCCATGTTTGTGATGCCTAATCTTGAAATGAATAGGGATTACTATGACT
130 GTATCCTAATGAGAAGACCATGTTTATGATGCCTAATCTTGAAAAGAATGGGGATTAGTATGACT
* * ** *
1389074 GTTCTTGTTTATATAATTTAAGAGGTAAACTTTGATTCTATCAAAAACTGTGAAAAGAAAAGCTT
195 ATTCTTGTTTGTATAATTTAAGAGACAAACTTTGATTCTATCAAAAACTGTGGAAAGAAAAGCTT
* * * *
1389139 TTTTTGGCCACACCAAAGCATCAATGTCATGTATCTTAATGAAGGGATTGTGTTTTTGG-TTCCC
260 TTCTT-GCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTGGCTTCCC
* * * * *
1389203 AATCTTG-AAAGAATGGAGAATGTTATGAGCATCGATGCTTGTCTTATTTATGGGATGAACTTTG
323 AATCTTGCAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTG
* * * * * *
1389267 ATTTTATAGAAAATTGGGTAAAGAAAAAAATTTACCTGCAAAA-AAAATCCTCAATGTCGTTTAT
388 ATTTTA-AGAAAATAGGGCAAAGAAAAAGATTT-CCTGCAAAAGAAAATCATCAATATCATTTAT
* * *
1389331 CTTAATGAGGAGAATGTGTTTATAA
451 CCTAATGAGGAGAAAGTGTTTATAG
* * * *
1389356 TGCCTAATCACCAAATAAATGTAGATCATTACTAGAATCCATGTTTATCTTATTTGAGGCATGAA
1 TGCCTAATCACCAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACATGAA
* * * * *
1389421 CTTAGACTCTATAAAAATTAGTCAAAAAAATGCCTTTCTTGCAAACCGAAAACATCAATATCGTG
66 CTTAGACTTTACAAAAATTAGTGAAAAAAATGCCTTTCTTGCAAACCCAAAACATCAATATCATG
* * *
1389486 TATCCTAATGAGAAAACTATGTTTATGATACCTAATCTTGAAAAGAATGGGGATTAGTATGACTA
131 TATCCTAATGAGAAGACCATGTTTATGATGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTA
* *
1389551 TTCTTATTTATATAATTTAAGAGACAAACTTTGATTCTATCAAAAACTGTGGAAAGAAAAGCTTT
196 TTCTTGTTTGTATAATTTAAGAGACAAACTTTGATTCTATCAAAAACTGTGGAAAGAAAAGCTTT
* * * *
1389616 TCTTGCGACACCAAAGCATTAGTGTCATGTATCCTAATGAAAGGAATGTGTTTTGGCTTCCCAAT
261 TCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAAT
* * * * *
1389681 CCTGCAATGAATGGAGACTATTACGAGAATCGATGCTTGTGTTTTTTAAGGGATGAACTTTGAGT
326 CTTGCAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATT
* * ** *
1389746 TTAAGGAAAATAGGGC-AAGGAGAAGATTTTTATGCAAAAGAAAATCATCAATATCATTTATCTT
391 TTAA-GAAAATAGGGCAAAGAAAAAGA-TTTCCTGCAAAAGAAAATCATCAATATCATTTATCCT
* *
1389810 AATAAGGAGAAAGTGTTTTTAG
454 AATGAGGAGAAAGTGTTTATAG
*
1389832 TGCCCAATCACCAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACATGAA
1 TGCCTAATCACCAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACATGAA
* * * * *
1389897 CTTAAACTTCACAAAAATTACTGAAAAAAATGCCTTTCTTCCAAACCCAAAACATCAGTATCATG
66 CTTAGACTTTACAAAAATTAGTGAAAAAAATGCCTTTCTTGCAAACCCAAAACATCAATATCATG
* * * * *
1389962 TATCCTAATGAGAAGCCCATATTTATGATGCCTAATCTTGAAAAGAATAGGGACTAGTATGACTG
131 TATCCTAATGAGAAGACCATGTTTATGATGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTA
* * * * *
1390027 TTCTTGTTTGCATAATTTAAGAGATAAACTTTGATTTTATCAAAAACTATGGAAAGAAAA-CCTT
196 TTCTTGTTTGTATAATTTAAGAGACAAACTTTGATTCTATCAAAAACTGTGGAAAGAAAAGCTTT
* * * *
1390091 TCTTGCGACACCAAAGCATCAATGTCATGTATCTTAATGAAGGTATTGTGTTTTTGG-TTCCCAA
261 TCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTGGCTTCCCAA
* **
1390155 TCTTG-AAAGAATGGAGAATGCTACGAGAATCGATGCTTGTCTTATTTATA-GGATGAACTTTGA
325 TCTTGCAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTA-AGGGATGAACTTTGA
* * *
1390218 TTTTATGAAAAATAGGGCAAAG--AAAGATTTCCTAGCAAAA-AAAATCCTCAATATTATTTATC
389 TTTTAAG-AAAATAGGGCAAAGAAAAAGATTTCCT-GCAAAAGAAAATCATCAATATCATTTATC
*
1390280 CTAAAGAGGAGAATA-TGTTTATAG
452 CTAATGAGGAGAA-AGTGTTTATAG
* * * * * * *
1390304 TGTCTAATCACAAAATAAGTGAAGATCTTTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAA
1 TGCCTAATCACCAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACATGAA
* ** * * * *
1390369 CTTAGACTTTACAAAAATTGGTGGGAAAAATACCTTTCTGGCAAAACCAAAACATCAATATCAAG
66 CTTAGACTTTACAAAAATTAGTGAAAAAAATGCCTTTCTTGCAAACCCAAAACATCAATATCATG
* * * *
1390434 TATCCTAATGAGAA-AACAGGTTTATGGTGCCTAATCTTGGAAAGAATGGGGATTAGTATGACTA
131 TATCCTAATGAGAAGACCATGTTTATGATGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTA
* * * *
1390498 TTCTTATTTGTATTATTTAAGAGATAAACTTTGATTCTATCAAAAAC-GATAG-AAGAAAAGGCT
196 TTCTTGTTTGTATAATTTAAGAGACAAACTTTGATTCTATCAAAAACTG-TGGAAAGAAAA-GCT
* * *
1390561 TTTCTTGCAACACCAAAGCATCAATGTCGTGTATCCTAATAAAGGAAATGTGTTTTGGCTTCCCA
259 TTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCA
* * * * * * *
1390626 ATCTTGAAAATAATGGAGTCTATTATGAGAA-CTGATGCTTATCTTATTTAAGGGATTAACTTCG
324 ATCTTGCAAAGAATGGAGACTATTACGAGAATC-GATGCTTGTCTTATTTAAGGGATGAACTTTG
* * * * * * *
1390690 ATTTTAAGAAATGTAGGGCATA-AAAAAGATTTCCATGTAAACGAAAATCATTAGTACCATTTAT
388 ATTTTAAGAAA-ATAGGGCAAAGAAAAAGATTTCC-TGCAAAAGAAAATCATCAATATCATTTAT
*
1390754 CCTAATGAGGAGAATGTGTTTATAG
451 CCTAATGAGGAGAAAGTGTTTATAG
** ** * *
1390779 TGCCTAATCATAAAATGAAA-GAAGATCATTACTAGAATCCATGTTTGTCTCATACGAGATACGA
1 TGCCTAATCACCAAAT-AAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACATGA
* * * * ** * * *
1390843 GCTTCGACTTTACAAAAATTGGTGAGAAAAAA-GCCTTTCTTACAAAGGCAAAACATCCACATGA
65 ACTTAGACTTTACAAAAATTAGTGA-AAAAAATGCCTTTCTTGCAAACCCAAAACATCAATATCA
** * * * * * * * *
1390907 CATATTCTAATAAGAAGACTATGTTTATGGTGCCAAATCCTGAAAAGAATGGGAATTAGTATGAG
129 TGTATCCTAATGAGAAGACCATGTTTATGATGCCTAATCTTGAAAAGAATGGGGATTAGTATGAC
* * * * * *
1390972 TATTCTTCTTTGTCTTATTTGAA-AGGCAAACTTTGATTTTATCAAAAA-TGGTGGAAAGGAAAG
194 TATTCTTGTTTGTATAATTT-AAGAGACAAACTTTGATTCTATCAAAAACT-GTGGAAAGAAAAG
* *
1391035 CTTTTCTTGCAACACCAAAGCATTAATGTCATGTATCCTAATGAAAGGAATGTGTTTTGGCTTCC
257 CTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCC
* * * * *
1391100 CAATCTTGCAATGAATGGAGACTATTATGAGAATCGTTGCTTGTGTTTTTTAAGGGATGAACTTT
322 CAATCTTGCAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTT
* * *
1391165 GAGTTTAAGGAAAATAGGGC-AAGGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTA
387 GATTTTAA-GAAAATAGGGCAAAGAAAAAGA-TTTCCTGCAAAAGAAAATCATCAATATCATTTA
* *
1391229 TCCTAATAAGGAGAAAGTGTTTTTAG
450 TCCTAATGAGGAGAAAGTGTTTATAG
* * *
1391255 TGCCCAATCACCAAATAAATGAAGATCATTACAAGAATTCATGTTTGTCTCATTTGAGACATGAA
1 TGCCTAATCACCAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACATGAA
* * *
1391320 CTTATACTTTACAAAAATTAGTCAAAAAAATGCCTTTCTTGCAAACCCAAAACATCAGTATCATG
66 CTTAGACTTTACAAAAATTAGTGAAAAAAATGCCTTTCTTGCAAACCCAAAACATCAATATCATG
* * * * *
1391385 TATCCTAATGAGAAGCCCATGTTTGTGATGCCTAATCTTGAAAAGAATAGGGATTACTATGACTG
131 TATCCTAATGAGAAGACCATGTTTATGATGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTA
*
1391450 TTCTTGTTTGTATAATTTAAGAGATAAACTTTGATTCTATCAAAAACTGTGGAAAGAAAAGCTTT
196 TTCTTGTTTGTATAATTTAAGAGACAAACTTTGATTCTATCAAAAACTGTGGAAAGAAAAGCTTT
** * * *
1391515 TCTTGTGACACCAAATCATCAATGTCATGTATCTTAATGAAGGGATTGTGTTTTTTGG-TTCCCA
261 TCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG--TTTTGGCTTCCCA
* * * *
1391579 ATCTTG-AAAGAATGGAGAATGTTACGAGCATCGATGCTTGTCTTATTTATGGGATGAACTTTGA
324 ATCTTGCAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA
* * * * * * * *
1391643 TTTTATGGAAAATTGGGTAAAGAAAAAAATTTACCTGCAAAA-AAAGTCCTCAATGTCGTTTATC
389 TTTTA-AGAAAATAGGGCAAAGAAAAAGATTT-CCTGCAAAAGAAAATCATCAATATCATTTATC
* *
1391707 CTAATGAGGAGAATGTGTTTATAA
452 CTAATGAGGAGAAAGTGTTTATAG
* * * *
1391731 TGACTAATCACCAAATGAAA-GTAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCATGA
1 TGCCTAATCACCAAAT-AAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACATGA
* * * **
1391795 ACTTAGACTCTACAAAAATTAGTCAAAAAAATGCCTTTCTTGCAAACCCAAAACATCAGTATTGT
65 ACTTAGACTTTACAAAAATTAGTGAAAAAAATGCCTTTCTTGCAAACCCAAAACATCAATATCAT
* * *
1391860 GTATCCTAATGAGAAAACTATGTTTATGATACCTAATCTTGAAAAGAATGGGGATTAGTATGACT
130 GTATCCTAATGAGAAGACCATGTTTATGATGCCTAATCTTGAAAAGAATGGGGATTAGTATGACT
* *
1391925 ATT-TTATTTGTATAATTTAAGAGACAAACTTTGATTCTATCAAAAACTGTGGAAATAAAAGCTT
195 ATTCTTGTTTGTATAATTTAAGAGACAAACTTTGATTCTATCAAAAACTGTGGAAAGAAAAGCTT
** *** *
1391989 TTCTTGTGACACCAAAGC-TTTGTGTCATGTATCCTAATGAAAGGAATGTGTTTTGGCTTCCCAA
260 TTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAA
* * * * * *
1392053 TCTTGCAATGAATGGAGACTATTACGACAATCGATGCTTGTGTTTTTTGAGGGATGAACTTTGAG
325 TCTTGCAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT
* *
1392118 TTTAAGGAAAATAGGGC-AAGGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCC
390 TTTAA-GAAAATAGGGCAAAGAAAAAGA-TTTCCTGCAAAAGAAAATCATCAATATCATTTATCC
* *
1392182 TAATAAGGAGAAAGTGTTTTTAG
453 TAATGAGGAGAAAGTGTTTATAG
*
1392205 TGCCCAATCACCAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACATGAA
1 TGCCTAATCACCAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACATGAA
* *
1392270 CTTAAACTTTACAAAAATTAGTCAAAAAAATGCCTTTCTTGCAAACCCAAAACATCAATATCATG
66 CTTAGACTTTACAAAAATTAGTGAAAAAAATGCCTTTCTTGCAAACCCAAAACATCAATATCATG
* * * * * * *
1392335 TATCCTAATGACAAGCCCAT-ATT-T-ATGCCTAATCTTGAAATGAATAGGGATTACTATGACTG
131 TATCCTAATGAGAAGACCATGTTTATGATGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTA
*
1392397 TTCTTGTTTGTATAATTTAAGAGATAAACTTTGATTCTATCAAAAACTGTGGAAAGAAAAGCTTT
196 TTCTTGTTTGTATAATTTAAGAGACAAACTTTGATTCTATCAAAAACTGTGGAAAGAAAAGCTTT
** * * *
1392462 TCTTGTGACACCAAAGCATCATTGTCATGTATCTTAATGAAGGGATTGTGTTTTTTGG-TTCCCA
261 TCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG--TTTTGGCTTCCCA
* * * *
1392526 ATCTTG-AAAGAATGGAGAATGTTACGAGCATCGATGCTTGTCTTATTTATGGGATGAACTTTGA
324 ATCTTGCAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA
* * * * * * * *
1392590 TTTTATGGAAAATTGGGTAAAGAAAAAAATTTACCTGCAAAA-AAAGTCCTCAATGTCGTTTATC
389 TTTTA-AGAAAATAGGGCAAAGAAAAAGATTT-CCTGCAAAAGAAAATCATCAATATCATTTATC
* *
1392654 CTAATGAGGAGAATGTGTTTATAA
452 CTAATGAGGAGAAAGTGTTTATAG
* * * * * *
1392678 TGCCTAATCACC-AATGAATGTAGATCATTACTAGAATCCATGTTTGTCTTATTTGCGGCACGAA
1 TGCCTAATCACCAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACATGAA
* * * * *
1392742 CTTAGACTCTACATAAATTAGTCAAAAAAATGCCTTTCTTGCAAACCCAAAACATCAGTATCGTG
66 CTTAGACTTTACAAAAATTAGTGAAAAAAATGCCTTTCTTGCAAACCCAAAACATCAATATCATG
* ** *
1392807 TATCCTAATGAGAAAAGTATGTTTATGATACCTAATCTTGAAAAGAATGGGGATTAGTATGACTA
131 TATCCTAATGAGAAGACCATGTTTATGATGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTA
* * *
1392872 TTCTTATTTGTATAATTTAAGAGACAAACTTTGATTCTATCAAAAACTATGGAAAGAAAAGCATT
196 TTCTTGTTTGTATAATTTAAGAGACAAACTTTGATTCTATCAAAAACTGTGGAAAGAAAAGCTTT
* *
1392937 TCTTGCAACACCAAAGCATCAATGTCATGTATCCTAAGGAAGGGATTGTGTTTTTGG-TTCCCAA
261 TCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTGGCTTCCCAA
* * * * * * *
1393001 TC-TGGAAAGAATGGAGAATGTTACAAGAACCGATGTTTGTCTTATTTAAGAGATGAACTTTGAT
325 TCTTGCAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT
* * * *
1393065 TTTATGAAAAATAGGGCAAAG-ACAAGATTTCC--CAAAAAAAAATCCTCAATATCATTTATCCT
390 TTTAAG-AAAATAGGGCAAAGAAAAAGATTTCCTGCAAAAGAAAATCATCAATATCATTTATCCT
* * * *
1393127 AATGAGGACAATGTGTCTATAA
454 AATGAGGAGAAAGTGTTTATAG
* * * * * * * *
1393149 TGTCTAATCACAAAATAAGTGAAGATCTTTAGTAGAATCTATGTTTGTCTCATTTGAGGCACGAA
1 TGCCTAATCACCAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACATGAA
* * ** * *
1393214 CTTAGAATTTACAAAAATTGGTGGCAAAAATACCTTTCTGGTG-AAA-CCAAAACATCAATATCG
66 CTTAGACTTTACAAAAATTAGTGAAAAAAATGCCTTTCT--TGCAAACCCAAAACATCAATATCA
* * * * *
1393277 TGTATCCTAATGAGAAGATCATGTTTATGGTGCCTAATCCTGAAAAGGATGGTGATTAGTATGAC
129 TGTATCCTAATGAGAAGACCATGTTTATGATGCCTAATCTTGAAAAGAATGGGGATTAGTATGAC
* * * **
1393342 TATTCTTGTTTGTATTATTTAAGAGACAAATTTTGATTATATCAAAAA-TGGTGGAAAGAAGGGC
194 TATTCTTGTTTGTATAATTTAAGAGACAAACTTTGATTCTATCAAAAACT-GTGGAAAGAAAAGC
* * * ** * *
1393406 TTTTCTTGCAACACCAAAGCTTTAATGTCATGTATCCTAATAAAGAAAATGTGTTTTGGTTTCCT
258 TTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCC
* * * * * * *
1393471 AATCTTGAAAAGAATGGAGACTATTATGAGAA-CTGATGCTTATCTTGTTGAA-GGATTAACTTC
323 AATCTTGCAAAGAATGGAGACTATTACGAGAATC-GATGCTTGTCTTATTTAAGGGATGAACTTT
* * * *
1393534 GATTTTAAGAAAAATAGGGTAAAGAAAAA-ATTTTCGTGCAAAAGAAAGTCAT-AAGTTTCATTT
387 GATTTTAAG-AAAATAGGGCAAAGAAAAAGA-TTTCCTGCAAAAGAAAATCATCAA-TATCATTT
*
1393597 ATCCTAATGAGAAGAATA-TGTTTATAG
449 ATCCTAATGAGGAGAA-AGTGTTTATAG
* ** * * *
1393624 TGCCTAATTATAAAATGAAA-GACGATAATTACTACAATCCATGTTTGTCTCATTTGAGATC-T-
1 TGCCTAATCACCAAAT-AAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGA-CATG
* * * ** * * * *
1393686 AAGCTTTGACTTTACACAAATTGGTGAGAAAAAA-GCCTTTCTTGTGAAGCCAAAGCATTAATAG
64 AA-CTTAGACTTTACAAAAATTAGTGA-AAAAAATGCCTTTCTTGCAAACCCAAAACATCAATAT
* ** * * * * * *
1393750 GATGTATTTTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAATGAATGGGAATTAGTATG
127 CATGTATCCTAATGAGAAGACCATGTTTATGATGCCTAATCTTGAAAAGAATGGGGATTAGTATG
* * * * * * *
1393815 AGTATTCTTGTTTTTCTTATTTAAAAGATAAACTTTGATTCTATCAAAAA-TGGTGAAAAGAAAA
192 ACTATTCTTGTTTGTATAATTTAAGAGACAAACTTTGATTCTATCAAAAACT-GTGGAAAGAAAA
* *
1393879 GCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTCTTTTGGCTTC
256 GCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTC
* * * *
1393944 CCAATCTTGGAAAGAATGAAGACTGTTACGAGAATCGATGCTTGTGTCT-TTTAAGGGATGAACT
321 CCAATCTTGCAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCT-TATTTAAGGGATGAACT
* * * * * * *
1394008 TTGAGTTTAAGGAAAAAACGGC-AAGCAAAAGATTTTCATGCAAAACAAAATCATCAGTATCATT
385 TTGATTTTAA-GAAAATAGGGCAAAGAAAAAGA-TTTCCTGCAAAAGAAAATCATCAATATCATT
* *
1394072 TATCCTAATGAGAAGAATGTGTTTATAG
448 TATCCTAATGAGGAGAAAGTGTTTATAG
* * * * * **
1394100 TGTCTAATCA-TAATATGAGTGAAGATCAATGGTAGAATCCATGTTTGTCTCATTTGAGGCACA-
1 TGCCTAATCACCAA-ATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA-G-ACAT
* * ** * * * *
1394163 AAACTTAGACTTTACAAAAATTGGTAGGTAAAAA-GCCTTTCTTGTGAAA-CTAAAGCATTAATA
63 GAACTTAGACTTTACAAAAATTAGT-GAAAAAAATGCCTTTCTTG-CAAACCCAAAACATCAATA
* * * * * * * * * *
1394226 TCTTGTATCCTAATAAGAGGACTATGTTTAGGGTGCCTAATCATGAAAGGAATGGGGATTAGAAA
126 TCATGTATCCTAATGAGAAGACCATGTTTATGATGCCTAATCTTGAAAAGAATGGGGATTAGTAT
* * * * * * *
1394291 CACTATTCATGTTTGTTTTATTTTAGAGACATACTTTGATTCTATCCAAAA-TGGTGGAAAGAAA
191 GACTATTCTTGTTTGTATAATTTAAGAGACAAACTTTGATTCTATCAAAAACT-GTGGAAAGAAA
*** * * * * * *
1394355 AGCTTTTCTTTTGATACCAAAGCATCAATGCCTTGTATCCTAATAAATGGAATGTGTTTTGGCCT
255 AGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTT
* * * * * * * * * *
1394420 CCCAATCTTGAAAAGAATAGAGATTCTTACGGGAATTGATGTTTATCTTATTTAAGGGATAAAGT
320 CCCAATCTTGCAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACT
* * * * * **
1394485 TTGATTTTATGGAAAGTAGGGTAGAG-AAAAGATTTCC-GAACAAAAGAAAATCGTCAATATTTT
385 TTGATTTTA-AGAAAATAGGGCAAAGAAAAAGATTTCCTG--CAAAAGAAAATCATCAATATCAT
* *
1394548 TTACCCTAATGAGGAGAATGTGTTTATAG
447 TTATCCTAATGAGGAGAAAGTGTTTATAG
* * * * * * * *
1394577 TGCCTAATCACAAAATGAGTAAAAATCAATAGTAGAATCCATGTTTGTCTCATTTGAGGCATGAA
1 TGCCTAATCACCAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACATGAA
* * * * **
1394642 CTTACACTTTACAAAAATTGGTGAGAAAAATGCCTTTCTTGCAAAACCAAAACATCAATATTGTG
66 CTTAGACTTTACAAAAATTAGTGAAAAAAATGCCTTTCTTGCAAACCCAAAACATCAATATCATG
* *
1394707 TATCGTAATGAGAAAACCATG
131 TATCCTAATGAGAAGACCATG
1394728 ATGTATTATT
Statistics
Matches: 6971, Mismatches: 1082, Indels: 340
0.83 0.13 0.04
Matches are distributed among these distances:
470 19 0.00
471 277 0.04
472 954 0.14
473 375 0.05
474 551 0.08
475 1170 0.17
476 3001 0.43
477 596 0.09
478 28 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (475 bp):
TGCCTAATCACCAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACATGAA
CTTAGACTTTACAAAAATTAGTGAAAAAAATGCCTTTCTTGCAAACCCAAAACATCAATATCATG
TATCCTAATGAGAAGACCATGTTTATGATGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTA
TTCTTGTTTGTATAATTTAAGAGACAAACTTTGATTCTATCAAAAACTGTGGAAAGAAAAGCTTT
TCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAAT
CTTGCAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATT
TTAAGAAAATAGGGCAAAGAAAAAGATTTCCTGCAAAAGAAAATCATCAATATCATTTATCCTAA
TGAGGAGAAAGTGTTTATAG
Found at i:1391627 original size:159 final size:158
Alignment explanation
Indices: 1386228--1394011 Score: 1698
Period size: 159 Copynumber: 49.2 Consensus size: 158
1386218 TGAGTATTCT
** * *
1386228 TGTTTGTCTTATTTGAA-AGACAAACTTTGATTTTATCAAAAA-TGCTGGAAAGAAAAGCTATTC
1 TGTTTGTCTTATTT-AAGAGATGAACTTTGATTCTATCAAAAATTG-TGGAAAGAAAAGCTTTTC
* * * *
1386291 TTGCAACACCAAAGCATTAATGTCATGTATCCTAACGAAAGGAATGTGTTT-TGGCTTCCCAATC
64 TTGCAA-ACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTATGG-TTCCCAATC
* * *
1386355 TTGCAATGAATGGAGACT-ATTACGA-CAATCGG
127 TTG-AAAGAATGGAGAATCATTACGAGC-ATCGA
* * * * *** * * *
1386387 TGCTTGTGTTTTTTAAGGGATGAACTTTGAGTT-TAAGGAAAATAG-GGCAAGGAAAAGATTTTC
1 TGTTTGTCTTATTTAAGAGATGAACTTTGA-TTCTATCAAAAATTGTGG-AAAGAAAAGCTTTTC
* ** * * * * * *
1386450 ATGCAAAAGAAAATCATCAAT-ACTATTTATCCTAAT-AAGGAGAAAGTGTCTT-TAGTGCTCAA
64 TTGC-AAACCAAATCATCAATGTC-ATGTATCCTAATGAAGG-GAATGTGT-TTATGGTTCCCAA
*** * * * *
1386512 TCACCAAATAAATGAAG-ATCATTACTAGAATCGA
125 TCTTGAAA-GAATGGAGAATCATTACGAGCATCGA
* * * * * * *
1386546 TGTTTGTCTCATTTGAGACATGAACATAGACTT-TA-CAAAAATTAGT-CAAA-AAAATGCCTTT
1 TGTTTGTCTTATTTAAGAGATGAACTTTGA-TTCTATCAAAAATT-GTGGAAAGAAAA-GCTTTT
* * * *** * * * *
1386607 CTTGCAAACCCAAAACATCAGTATCATGTATCCTAATGAGAAGCCCA--TGTTTGTGATGCCTAA
63 CTTGCAAA-CCAAATCATCAATGTCATGTATCCTAAT--GAAGGGAATGTGTTTATGGTTCCCAA
* * * * *
1386670 TCTTGAAATGAATAGG-G-ATTACTATGA-CTGTTC-T
125 TCTTGAAA-GAAT-GGAGAATCATTACGAGC--ATCGA
* * * * * * * *
1386704 TGTTTATATAATTTAAGAGGTAAACTTTGATTCTATCAAAAACTGTGAAAAGAAAAGCTTTTTTT
1 TGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAATTGTGGAAAGAAAAGCTTTTCTT
* * * * *
1386769 GGCCACACCAAAGCATCAATGTCATGTATCTTAATGAAGGGATTGTGTTTTTGGTTCCCAATCTT
66 -G-CAAACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTATGGTTCCCAATCTT
*
1386834 GAAAGAATGGAGAAT-GTTACGAGCATCGA
129 GAAAGAATGGAGAATCATTACGAGCATCGA
* * * * ** *
1386863 TGCTTGTCTTATTTATGGGATGAACTTTGATTTTAT-AGAAAATTG-GGTAAAGAAAAAAATTTA
1 TGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCA-AAAATTGTGG-AAAG-AAAAGCTTTT
* ** * * * * ** * *
1386926 CCTGCAAAAAAAATCCTCAATGTCGTTTATCTTAATG-AGGAGAATGTGTTTATAATGCCTAATC
63 CTTGCAAACCAAATCATCAATGTCATGTATCCTAATGAAGG-GAATGTGTTTATGGTTCCCAATC
*** * * * * *
1386990 ACCAAATAAATGTAG-ATCATTACTAGAATCCA
127 TTGAAA-GAATGGAGAATCATTACGAGCATCGA
* * * * * *
1387022 TGTTTATCTTATTTGAG-GCATGAACTTAGACTCTAT-AAAAATTAGT-CAAA-AAAATGCCTTT
1 TGTTTGTCTTATTTAAGAG-ATGAACTTTGATTCTATCAAAAATT-GTGGAAAGAAAA-GCTTTT
* * * ** * * * *
1387083 CTTGCAAACCGAAAACATCAATATCGTGTATCCTAATG-AGAAAACTATGTTTATGATACCTAAT
63 CTTGCAAACC-AAATCATCAATGTCATGTATCCTAATGAAGGGAA-TGTGTTTATGGTTCCCAAT
* * * * *
1387147 CTTGAAAAGAATGG-GGATTAGTATGA-CTATTC-T
126 CTTG-AAAGAATGGAGAATCATTACGAGC-A-TCGA
* * * * ** *
1387180 TATTTATATAATTTAAGAGACAAACTTTGATTCTATCAAAAACTGTGGAAAGAAAAGCTTTTCTT
1 TGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAATTGTGGAAAGAAAAGCTTTTCTT
* * * * * *
1387245 GCGACACCAAAGCATTAGTGTCATGTATCCTAATGAAAGGAATGTGTTT-TGGCTTCCCAATCCT
66 GC-AAACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTATGG-TTCCCAATCTT
* * *
1387309 GCAATGAATGGAGACT-ATTACGAGAATCGA
129 G-AAAGAATGGAGAATCATTACGAGCATCGA
* * * * *** * * * *
1387339 TGCTTGTGTTTTTTAAGGGATGAACTTTGAGTT-TAAGGAAAATAG-GGCAAGGAGAAGATTTT-
1 TGTTTGTCTTATTTAAGAGATGAACTTTGA-TTCTATCAAAAATTGTGG-AAAGAAAAGCTTTTC
** * * * * * * *
1387401 TATGCAAAAGAAAATCATCAATATCATTTATCTTAAT-AAGGAGAAAGTGTTTTTAGTGCCCAAT
64 T-TGC-AAACCAAATCATCAATGTCATGTATCCTAATGAAGG-GAATGTGTTTATGGTTCCCAAT
*** * * * * *
1387465 CACCAAATAAATGAAG-ATCATTACTAGAATCCA
126 CTTGAAA-GAATGGAGAATCATTACGAGCATCGA
* * * ** * *
1387498 TGTTTGTCTCATTTGAGACATGAACTTAAACTTC-A-CAAAAATTACT-GAAA-AAAATGCCTTT
1 TGTTTGTCTTATTTAAGAGATGAACTTTGA-TTCTATCAAAAATT-GTGGAAAGAAAA-GCTTTT
* * * * *** * * * *
1387559 CTTCCAAACCCAAAACATCAGTATCATGTATCCTAATGAGAAGCCCA--TATTTATGATGCCTAA
63 CTTGCAAA-CCAAATCATCAATGTCATGTATCCTAAT--GAAGGGAATGTGTTTATGGTTCCCAA
* * * * *
1387622 TCTTGAAAAGAATAGG-GACT-AGTATGA-CTGTTC-T
125 TCTTG-AAAGAAT-GGAGAATCATTACGAGC--ATCGA
* * * * * *
1387656 TGTTTG-CATAATTTAAGAGATAAACTTTGATTTTATCAAAAACTATGGAAAGAAAA-CCTTTCT
1 TGTTTGTC-TTATTTAAGAGATGAACTTTGATTCTATCAAAAATTGTGGAAAGAAAAGCTTTTCT
* * * * * *
1387719 TGCGACACCAAAGCATCAATGTCATGTATCTTAATGAAGGTATTGTGTTTTTGGTTCCCAATCTT
65 TGC-AAACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTATGGTTCCCAATCTT
*
1387784 GAAAGAATGGAGAATGC--TACGAGAATCGA
129 GAAAGAATGGAGAAT-CATTACGAGCATCGA
* * * * * *
1387813 TGCTTGTCTTATTTATAG-GATGAACTTTGATTTTATGAAAAATAG-GGCAAAG-AAAGATTTCC
1 TGTTTGTCTTATTTA-AGAGATGAACTTTGATTCTATCAAAAATTGTGG-AAAGAAAAGCTTTTC
* ** * * * * * * * *
1387875 TAGCAAAAAAAATCCTCAATATTATTTATCCTAAAG-AGGAGAATATGTTTATAGTGT-CTAATC
64 TTGCAAACCAAATCATCAATGTCATGTATCCTAATGAAGG-GAATGTGTTTATGGT-TCCCAATC
*** * * * * *
1387938 ACAAAATAAGTGAAG-ATCTTTA-GTAGAATCCA
127 TTGAAAGAA-TGGAGAATCATTACG-AGCATCGA
* * * * * *
1387970 TGTTTGTCTCATTTGAG-GCACGAACTTAGACTT-TA-CAAAAATTGGTGGGAAA-AATA-CCTT
1 TGTTTGTCTTATTTAAGAG-ATGAACTTTGA-TTCTATCAAAAATT-GT-GGAAAGAAAAGCTTT
* * * * ** * * *
1388030 TCTGGCAAAACCAAAACATCAATATCAAGTATCCTAATG-AGAAAACAG-GTTTATGGTGCCTAA
62 TCTTGC-AAACCAAATCATCAATGTCATGTATCCTAATGAAGGGAA-TGTGTTTATGGTTCCCAA
* * * * *
1388093 TCTTGGAAAGAATGG-GGATTAGTATGA-CTATTC-T
125 TCTT-GAAAGAATGGAGAATCATTACGAGC-A-TCGA
* * * * *
1388127 TATTTGTATTATTTAAGAGATAAACTTTGATTCTATCAAAAA-CGATAG-AAGAAAAGGCTTTTC
1 TGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAATTG-TGGAAAGAAAA-GCTTTTC
* * * *
1388190 TTGCAACACCAAAGCATCAATGTCGTGTATCCTAATAAAGGAAATGTGTTT-TGGCTTCCCAATC
64 TTGCAA-ACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTATGG-TTCCCAATC
* * *
1388254 TTGAAAATAATGGAG--TCTATTATGAG-AACTGA
127 TTG-AAAGAATGGAGAATC-ATTACGAGCATC-GA
* * * * * *
1388286 TGCTTATCTTATTTAAGGGATTAACTTCGATT-T-T-AAGAAA-TGTAGGGCATAA-AAAAGATT
1 TGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAA-AAATTGT--GG-A-AAGAAAAGCTT
* * * * * * ** * * * *
1388346 TCCATGTAAACGAAAATCATTAGTACCATTTATCCTAATG-AGGAGAATGTGTTTATAGTGCCTA
61 TTCTTGCAAAC-CAAATCATCAATGTCATGTATCCTAATGAAGG-GAATGTGTTTATGGTTCCCA
* * * * * * *
1388410 ATCATAAAATGAAAGAAG-ATCATTACTAGAATCCA
124 ATCTTGAAA-GAATGGAGAATCATTACGAGCATCGA
* * * * *
1388445 TGTTTGTCTCA--TACGAGATACGAGCTTCGACTT-TA-CAAAAATTG-GTGAGAA-AAAAGCCT
1 TGTTTGTCTTATTTAAGAGAT--GAACTTTGA-TTCTATCAAAAATTGTG-GA-AAGAAAAGCTT
* * * * * * * * *
1388504 TTCTTACAAAGGCAAAACATCCACATGACA--TATTCTAAT-AAGAAGACTATGTTTATGGTGCC
61 TTCTTGCAAA-CCAAATCAT-CA-ATGTCATGTATCCTAATGAAG-GGAATGTGTTTATGGTTCC
* * * * * * *
1388566 AAATCCTGAAAAGAATGG-GAATTAGTATGAGTATTC-T
122 CAATCTTG-AAAGAATGGAGAATCATTACGAGCA-TCGA
* *** * * *
1388603 TCTTTGTCTTATTTGAA-AGGCAAACTTTGATTTTATCAAAAATGGTGGAAAGGAAAGCTTTTCT
1 TGTTTGTCTTATTT-AAGAGATGAACTTTGATTCTATCAAAAATTGTGGAAAGAAAAGCTTTTCT
* * *
1388667 TGCAACACCAAAGCATTAATGTCATGTATCCTAATGAAAGGAATGTGTTT-TGGCTTCCCAATCT
65 TGCAA-ACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTATGG-TTCCCAATCT
* * * * *
1388731 TGCAATGAATGGAGACT-ATTATGAGAATCGT
128 TG-AAAGAATGGAGAATCATTACGAGCATCGA
* * * * *** * * *
1388762 TGCTTGTGTTTTTTAAGGGATGAACTTTGAGTT-TAAGGAAAATAG-GGCAAGGAAAAGATTTTC
1 TGTTTGTCTTATTTAAGAGATGAACTTTGA-TTCTATCAAAAATTGTGG-AAAGAAAAGCTTTTC
* ** * * * * * *
1388825 ATGCAAAAGAAAATCATCAAT-ACTATTTATCCTAAT-AAGGAGAAAGTGTCTT-TAGTGCTCAA
64 TTGC-AAACCAAATCATCAATGTC-ATGTATCCTAATGAAGG-GAATGTGT-TTATGGTTCCCAA
*** * * * *
1388887 TCACCAAATAAATGAAG-ATCATTACTAGAATCGA
125 TCTTGAAA-GAATGGAGAATCATTACGAGCATCGA
* * * * * * *
1388921 TGTTTGTCTCATTTGAGACATGAACATAGACTT-TA-CAAAAATTAGT-CAAA-AAAATGCCTTT
1 TGTTTGTCTTATTTAAGAGATGAACTTTGA-TTCTATCAAAAATT-GTGGAAAGAAAA-GCTTTT
* * * *** * * * *
1388982 CTTGCAAACCCAAAACATCAGTATCATGTATCCTAATGAGAAGCCCA--TGTTTGTGATGCCTAA
63 CTTGCAAA-CCAAATCATCAATGTCATGTATCCTAAT--GAAGGGAATGTGTTTATGGTTCCCAA
* * * * *
1389045 TCTTGAAATGAATAGG-G-ATTACTATGA-CTGTTC-T
125 TCTTGAAA-GAAT-GGAGAATCATTACGAGC--ATCGA
* * * * * * * *
1389079 TGTTTATATAATTTAAGAGGTAAACTTTGATTCTATCAAAAACTGTGAAAAGAAAAGCTTTTTTT
1 TGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAATTGTGGAAAGAAAAGCTTTTCTT
* * * * *
1389144 GGCCACACCAAAGCATCAATGTCATGTATCTTAATGAAGGGATTGTGTTTTTGGTTCCCAATCTT
66 -G-CAAACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTATGGTTCCCAATCTT
* *
1389209 GAAAGAATGGAGAAT-GTTATGAGCATCGA
129 GAAAGAATGGAGAATCATTACGAGCATCGA
* * * * ** *
1389238 TGCTTGTCTTATTTATGGGATGAACTTTGATTTTAT-AGAAAATTG-GGTAAAGAAAAAAATTTA
1 TGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCA-AAAATTGTGG-AAAG-AAAAGCTTTT
* ** * * * * ** * *
1389301 CCTGCAAAAAAAATCCTCAATGTCGTTTATCTTAATG-AGGAGAATGTGTTTATAATGCCTAATC
63 CTTGCAAACCAAATCATCAATGTCATGTATCCTAATGAAGG-GAATGTGTTTATGGTTCCCAATC
*** * * * * *
1389365 ACCAAATAAATGTAG-ATCATTACTAGAATCCA
127 TTGAAA-GAATGGAGAATCATTACGAGCATCGA
* * * * * *
1389397 TGTTTATCTTATTTGAG-GCATGAACTTAGACTCTAT-AAAAATTAGT-CAAA-AAAATGCCTTT
1 TGTTTGTCTTATTTAAGAG-ATGAACTTTGATTCTATCAAAAATT-GTGGAAAGAAAA-GCTTTT
* * * ** * * * *
1389458 CTTGCAAACCGAAAACATCAATATCGTGTATCCTAATG-AGAAAACTATGTTTATGATACCTAAT
63 CTTGCAAACC-AAATCATCAATGTCATGTATCCTAATGAAGGGAA-TGTGTTTATGGTTCCCAAT
* * * * *
1389522 CTTGAAAAGAATGG-GGATTAGTATGA-CTATTC-T
126 CTTG-AAAGAATGGAGAATCATTACGAGC-A-TCGA
* * * * ** *
1389555 TATTTATATAATTTAAGAGACAAACTTTGATTCTATCAAAAACTGTGGAAAGAAAAGCTTTTCTT
1 TGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAATTGTGGAAAGAAAAGCTTTTCTT
* * * * * *
1389620 GCGACACCAAAGCATTAGTGTCATGTATCCTAATGAAAGGAATGTGTTT-TGGCTTCCCAATCCT
66 GC-AAACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTATGG-TTCCCAATCTT
* * *
1389684 GCAATGAATGGAGACT-ATTACGAGAATCGA
129 G-AAAGAATGGAGAATCATTACGAGCATCGA
* * * * *** * * * *
1389714 TGCTTGTGTTTTTTAAGGGATGAACTTTGAGTT-TAAGGAAAATAG-GGCAAGGAGAAGATTTT-
1 TGTTTGTCTTATTTAAGAGATGAACTTTGA-TTCTATCAAAAATTGTGG-AAAGAAAAGCTTTTC
** * * * * * * *
1389776 TATGCAAAAGAAAATCATCAATATCATTTATCTTAAT-AAGGAGAAAGTGTTTTTAGTGCCCAAT
64 T-TGC-AAACCAAATCATCAATGTCATGTATCCTAATGAAGG-GAATGTGTTTATGGTTCCCAAT
*** * * * * *
1389840 CACCAAATAAATGAAG-ATCATTACTAGAATCCA
126 CTTGAAA-GAATGGAGAATCATTACGAGCATCGA
* * * ** * *
1389873 TGTTTGTCTCATTTGAGACATGAACTTAAACTTC-A-CAAAAATTACT-GAAA-AAAATGCCTTT
1 TGTTTGTCTTATTTAAGAGATGAACTTTGA-TTCTATCAAAAATT-GTGGAAAGAAAA-GCTTTT
* * * * *** * * * *
1389934 CTTCCAAACCCAAAACATCAGTATCATGTATCCTAATGAGAAGCCCA--TATTTATGATGCCTAA
63 CTTGCAAA-CCAAATCATCAATGTCATGTATCCTAAT--GAAGGGAATGTGTTTATGGTTCCCAA
* * * * *
1389997 TCTTGAAAAGAATAGG-GACT-AGTATGA-CTGTTC-T
125 TCTTG-AAAGAAT-GGAGAATCATTACGAGC--ATCGA
* * * * * *
1390031 TGTTTG-CATAATTTAAGAGATAAACTTTGATTTTATCAAAAACTATGGAAAGAAAA-CCTTTCT
1 TGTTTGTC-TTATTTAAGAGATGAACTTTGATTCTATCAAAAATTGTGGAAAGAAAAGCTTTTCT
* * * * * *
1390094 TGCGACACCAAAGCATCAATGTCATGTATCTTAATGAAGGTATTGTGTTTTTGGTTCCCAATCTT
65 TGC-AAACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTATGGTTCCCAATCTT
*
1390159 GAAAGAATGGAGAATGC--TACGAGAATCGA
129 GAAAGAATGGAGAAT-CATTACGAGCATCGA
* * * * * *
1390188 TGCTTGTCTTATTTATAG-GATGAACTTTGATTTTATGAAAAATAG-GGCAAAG-AAAGATTTCC
1 TGTTTGTCTTATTTA-AGAGATGAACTTTGATTCTATCAAAAATTGTGG-AAAGAAAAGCTTTTC
* ** * * * * * * * *
1390250 TAGCAAAAAAAATCCTCAATATTATTTATCCTAAAG-AGGAGAATATGTTTATAGTGT-CTAATC
64 TTGCAAACCAAATCATCAATGTCATGTATCCTAATGAAGG-GAATGTGTTTATGGT-TCCCAATC
*** * * * * *
1390313 ACAAAATAAGTGAAG-ATCTTTA-GTAGAATCCA
127 TTGAAAGAA-TGGAGAATCATTACG-AGCATCGA
* * * * * *
1390345 TGTTTGTCTCATTTGAG-GCACGAACTTAGACTT-TA-CAAAAATTGGTGGGAAA-AATA-CCTT
1 TGTTTGTCTTATTTAAGAG-ATGAACTTTGA-TTCTATCAAAAATT-GT-GGAAAGAAAAGCTTT
* * * * ** * * *
1390405 TCTGGCAAAACCAAAACATCAATATCAAGTATCCTAATG-AGAAAACAG-GTTTATGGTGCCTAA
62 TCTTGC-AAACCAAATCATCAATGTCATGTATCCTAATGAAGGGAA-TGTGTTTATGGTTCCCAA
* * * * *
1390468 TCTTGGAAAGAATGG-GGATTAGTATGA-CTATTC-T
125 TCTT-GAAAGAATGGAGAATCATTACGAGC-A-TCGA
* * * * *
1390502 TATTTGTATTATTTAAGAGATAAACTTTGATTCTATCAAAAA-CGATAG-AAGAAAAGGCTTTTC
1 TGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAATTG-TGGAAAGAAAA-GCTTTTC
* * * *
1390565 TTGCAACACCAAAGCATCAATGTCGTGTATCCTAATAAAGGAAATGTGTTT-TGGCTTCCCAATC
64 TTGCAA-ACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTATGG-TTCCCAATC
* * *
1390629 TTGAAAATAATGGAG--TCTATTATGAG-AACTGA
127 TTG-AAAGAATGGAGAATC-ATTACGAGCATC-GA
* * * * * *
1390661 TGCTTATCTTATTTAAGGGATTAACTTCGATT-T-T-AAGAAA-TGTAGGGCATAA-AAAAGATT
1 TGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAA-AAATTGT--GG-A-AAGAAAAGCTT
* * * * * * ** * * * *
1390721 TCCATGTAAACGAAAATCATTAGTACCATTTATCCTAATG-AGGAGAATGTGTTTATAGTGCCTA
61 TTCTTGCAAAC-CAAATCATCAATGTCATGTATCCTAATGAAGG-GAATGTGTTTATGGTTCCCA
* * * * * * *
1390785 ATCATAAAATGAAAGAAG-ATCATTACTAGAATCCA
124 ATCTTGAAA-GAATGGAGAATCATTACGAGCATCGA
* * * * *
1390820 TGTTTGTCTCA--TACGAGATACGAGCTTCGACTT-TA-CAAAAATTG-GTGAGAA-AAAAGCCT
1 TGTTTGTCTTATTTAAGAGAT--GAACTTTGA-TTCTATCAAAAATTGTG-GA-AAGAAAAGCTT
* * * * * * * * *
1390879 TTCTTACAAAGGCAAAACATCCACATGACA--TATTCTAAT-AAGAAGACTATGTTTATGGTGCC
61 TTCTTGCAAA-CCAAATCAT-CA-ATGTCATGTATCCTAATGAAG-GGAATGTGTTTATGGTTCC
* * * * * * *
1390941 AAATCCTGAAAAGAATGG-GAATTAGTATGAGTATTC-T
122 CAATCTTG-AAAGAATGGAGAATCATTACGAGCA-TCGA
* *** * * *
1390978 TCTTTGTCTTATTTGAA-AGGCAAACTTTGATTTTATCAAAAATGGTGGAAAGGAAAGCTTTTCT
1 TGTTTGTCTTATTT-AAGAGATGAACTTTGATTCTATCAAAAATTGTGGAAAGAAAAGCTTTTCT
* * *
1391042 TGCAACACCAAAGCATTAATGTCATGTATCCTAATGAAAGGAATGTGTTT-TGGCTTCCCAATCT
65 TGCAA-ACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTATGG-TTCCCAATCT
* * * * *
1391106 TGCAATGAATGGAGACT-ATTATGAGAATCGT
128 TG-AAAGAATGGAGAATCATTACGAGCATCGA
* * * * *** * * *
1391137 TGCTTGTGTTTTTTAAGGGATGAACTTTGAGTT-TAAGGAAAATAG-GGCAAGGAAAAGATTTTC
1 TGTTTGTCTTATTTAAGAGATGAACTTTGA-TTCTATCAAAAATTGTGG-AAAGAAAAGCTTTTC
* ** * * * * * *
1391200 ATGCAAAAGAAAATCATCAATATCATTTATCCTAAT-AAGGAGAAAGTGTTTTTAGTGCCCAATC
64 TTGC-AAACCAAATCATCAATGTCATGTATCCTAATGAAGG-GAATGTGTTTATGGTTCCCAATC
*** * * * *
1391264 ACCAAATAAATGAAG-ATCATTACAAGAATTC-A
127 TTGAAA-GAATGGAGAATCATTACGAGCA-TCGA
* * * * *
1391296 TGTTTGTCTCATTTGAGACATGAACTTAT-ACTT-TA-CAAAAATTAGT-CAAA-AAAATGCCTT
1 TGTTTGTCTTATTTAAGAGATGAACTT-TGA-TTCTATCAAAAATT-GTGGAAAGAAAA-GCTTT
* * * *** * * * *
1391356 TCTTGCAAACCCAAAACATCAGTATCATGTATCCTAATGAGAAGCCCA--TGTTTGTGATGCCTA
62 TCTTGCAAA-CCAAATCATCAATGTCATGTATCCTAAT--GAAGGGAATGTGTTTATGGTTCCCA
* * * * *
1391419 ATCTTGAAAAGAATAGG-G-ATTACTATGA-CTGTTC-T
124 ATCTTG-AAAGAAT-GGAGAATCATTACGAGC--ATCGA
* * * *
1391454 TGTTTGTATAATTTAAGAGATAAACTTTGATTCTATCAAAAACTGTGGAAAGAAAAGCTTTTCTT
1 TGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAATTGTGGAAAGAAAAGCTTTTCTT
* * * * *
1391519 GTGACACCAAATCATCAATGTCATGTATCTTAATGAAGGGATTGTGTTTTTTGGTTCCCAATCTT
66 G-CAAACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTATGGTTCCCAATCTT
*
1391584 GAAAGAATGGAGAAT-GTTACGAGCATCGA
129 GAAAGAATGGAGAATCATTACGAGCATCGA
* * * * ** ** *
1391613 TGCTTGTCTTATTTATGGGATGAACTTTGATTTTATGGAAAATTG-GGTAAAGAAAAAAATTTAC
1 TGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAATTGTGG-AAAG-AAAAGCTTTTC
* * * * * ** ** *
1391677 CTGCAAA-AAAAGTCCTCAATGTCGTTTATCCTAATG-AGGAGAATGTGTTTATAATGACTAATC
64 TTGCAAACCAAA-TCATCAATGTCATGTATCCTAATGAAGG-GAATGTGTTTATGGTTCCCAATC
*** * * * * *
1391740 ACCAAATGAAAGTAG-ATCATTACTAGAATCCA
127 TTGAAA-GAATGGAGAATCATTACGAGCATCGA
* * * * *
1391772 TGTTTGTCTTATTTGAG-GCATGAACTTAGACTCTA-CAAAAATTAGT-CAAA-AAAATGCCTTT
1 TGTTTGTCTTATTTAAGAG-ATGAACTTTGATTCTATCAAAAATT-GTGGAAAGAAAA-GCTTTT
* * * ** ** * * * *
1391833 CTTGCAAACCCAAAACATCAGTATTGTGTATCCTAATG-AGAAAACTATGTTTATGATACCTAAT
63 CTTGCAAA-CCAAATCATCAATGTCATGTATCCTAATGAAGGGAA-TGTGTTTATGGTTCCCAAT
* * * * **
1391897 CTTGAAAAGAATGG-GGATTAGTATGA-CTAT-TT
126 CTTG-AAAGAATGGAGAATCATTACGAGC-ATCGA
* * * ** * *
1391929 TATTTGTATAATTTAAGAGACAAACTTTGATTCTATCAAAAACTGTGGAAATAAAAGCTTTTCTT
1 TGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAATTGTGGAAAGAAAAGCTTTTCTT
* * * *** *
1391994 GTGACACCAAAGC-TTTGTGTCATGTATCCTAATGAAAGGAATGTGTTT-TGGCTTCCCAATCTT
66 G-CAAACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTATGG-TTCCCAATCTT
* *
1392057 GCAATGAATGGAGACT-ATTACGA-CAATCGA
129 G-AAAGAATGGAGAATCATTACGAGC-ATCGA
* * * * * *** * * *
1392087 TGCTTGTGTTTTTTGAGGGATGAACTTTGAGTT-TAAGGAAAATAG-GGCAAGGAAAAGATTTTC
1 TGTTTGTCTTATTTAAGAGATGAACTTTGA-TTCTATCAAAAATTGTGG-AAAGAAAAGCTTTTC
* ** * * * * * *
1392150 ATGCAAAAGAAAATCATCAATATCATTTATCCTAAT-AAGGAGAAAGTGTTTTTAGTGCCCAATC
64 TTGC-AAACCAAATCATCAATGTCATGTATCCTAATGAAGG-GAATGTGTTTATGGTTCCCAATC
*** * * * * *
1392214 ACCAAATAAATGAAG-ATCATTACTAGAATCCA
127 TTGAAA-GAATGGAGAATCATTACGAGCATCGA
* * * ** * *
1392246 TGTTTGTCTCATTTGAGACATGAACTTAAACTT-TA-CAAAAATTAGT-CAAA-AAAATGCCTTT
1 TGTTTGTCTTATTTAAGAGATGAACTTTGA-TTCTATCAAAAATT-GTGGAAAGAAAA-GCTTTT
* * *** * *
1392307 CTTGCAAACCCAAAACATCAATATCATGTATCCTAATGACAAGCCCA--TATTTAT-G--CCTAA
63 CTTGCAAA-CCAAATCATCAATGTCATGTATCCTAATG--AAGGGAATGTGTTTATGGTTCCCAA
* * * * *
1392367 TCTTGAAATGAATAGG-G-ATTACTATGA-CTGTTC-T
125 TCTTGAAA-GAAT-GGAGAATCATTACGAGC--ATCGA
* * * *
1392401 TGTTTGTATAATTTAAGAGATAAACTTTGATTCTATCAAAAACTGTGGAAAGAAAAGCTTTTCTT
1 TGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAATTGTGGAAAGAAAAGCTTTTCTT
* * * * * * *
1392466 GTGACACCAAAGCATCATTGTCATGTATCTTAATGAAGGGATTGTGTTTTTTGGTTCCCAATCTT
66 G-CAAACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTATGGTTCCCAATCTT
*
1392531 GAAAGAATGGAGAAT-GTTACGAGCATCGA
129 GAAAGAATGGAGAATCATTACGAGCATCGA
* * * * ** ** *
1392560 TGCTTGTCTTATTTATGGGATGAACTTTGATTTTATGGAAAATTG-GGTAAAGAAAAAAATTTAC
1 TGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAATTGTGG-AAAG-AAAAGCTTTTC
* * * * * ** * *
1392624 CTGCAAA-AAAAGTCCTCAATGTCGTTTATCCTAATG-AGGAGAATGTGTTTATAATGCCTAATC
64 TTGCAAACCAAA-TCATCAATGTCATGTATCCTAATGAAGG-GAATGTGTTTATGGTTCCCAATC
*** * * * * *
1392687 ACCAATGAATGTAG-ATCATTACTAGAATCCA
127 TTGAAAGAATGGAGAATCATTACGAGCATCGA
** * * * * * *
1392718 TGTTTGTCTTATTTGCG-GCACGAACTTAGACTCTA-CATAAATTAGT-CAAA-AAAATGCCTTT
1 TGTTTGTCTTATTTAAGAG-ATGAACTTTGATTCTATCAAAAATT-GTGGAAAGAAAA-GCTTTT
* * * * ** * * * *
1392779 CTTGCAAACCCAAAACATCAGTATCGTGTATCCTAATG-AGAAAAGTATGTTTATGATACCTAAT
63 CTTGCAAA-CCAAATCATCAATGTCATGTATCCTAATGAAGGGAA-TGTGTTTATGGTTCCCAAT
* * * * *
1392843 CTTGAAAAGAATGG-GGATTAGTATGA-CTATTC-T
126 CTTG-AAAGAATGGAGAATCATTACGAGC-A-TCGA
* * * ** * * *
1392876 TATTTGTATAATTTAAGAGACAAACTTTGATTCTATCAAAAACTATGGAAAGAAAAGCATTTCTT
1 TGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAATTGTGGAAAGAAAAGCTTTTCTT
* * * * *
1392941 GCAACACCAAAGCATCAATGTCATGTATCCTAAGGAAGGGATTGTGTTTTTGGTTCCCAATCTGG
66 GCAA-ACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTATGGTTCCCAATCTTG
* * * *
1393006 AAAGAATGGAGAAT-GTTACAAGAACCGA
130 AAAGAATGGAGAATCATTACGAGCATCGA
* * * * *
1393034 TGTTTGTCTTATTTAAGAGATGAACTTTGATTTTATGAAAAATAG-GGCAAAGACAAG-ATTTC-
1 TGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAATTGTGG-AAAGAAAAGCTTTTCT
* ** * * * * * ** *
1393096 -CCAAAAAAAAATCCTCAATATCATTTATCCTAATG-AGGACAATGTGTCTATAATGT-CTAATC
65 TGC-AAACCAAATCATCAATGTCATGTATCCTAATGAAGG-GAATGTGTTTATGGT-TCCCAATC
*** * * * * *
1393158 ACAAAATAAGTGAAG-ATCTTTA-GTAGAATCTA
127 TTGAAAGAA-TGGAGAATCATTACG-AGCATCGA
* * * * * *
1393190 TGTTTGTCTCATTTGAG-GCACGAACTTAGAATT-TA-CAAAAATTGGTGGCAAA-AATA-CCTT
1 TGTTTGTCTTATTTAAGAG-ATGAACTTTG-ATTCTATCAAAAATT-GTGG-AAAGAAAAGCTTT
* * * * * * *
1393250 TCTGGTG-AAACCAAAACATCAATATCGTGTATCCTAATG-A-GAAGATCATGTTTATGGTGCCT
62 TCT--TGCAAACCAAATCATCAATGTCATGTATCCTAATGAAGGGA-AT-GTGTTTATGGTTCCC
* * * * * * *
1393312 AATCCTGAAAAGGATGGTG-ATTAGTATGA-CTATTC-T
123 AATCTTG-AAAGAATGGAGAATCATTACGAGC-A-TCGA
* ** * * * **
1393348 TGTTTGTATTATTTAAGAGACAAATTTTGATTATATCAAAAATGGTGGAAAGAAGGGCTTTTCTT
1 TGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAATTGTGGAAAGAAAAGCTTTTCTT
* * * * ** *
1393413 GCAACACCAAAGCTTTAATGTCATGTATCCTAATAAAGAAAATGTGTTT-TGGTTTCCTAATCTT
66 GCAA-ACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTATGG-TTCCCAATCTT
* * *
1393477 GAAAAGAATGGAGACT-ATTATGAG-AACTGA
129 G-AAAGAATGGAGAATCATTACGAGCATC-GA
* * * * * * * ** * ** *
1393507 TGCTTATCTTGTTGAAG-GATTAACTTCGATTTTAAGAAAAATAG-GGTAAAGAAAAAATTTTCG
1 TGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAATTGTGG-AAAGAAAAGCTTTTCT
** * * * * * * *
1393570 TGCAAAAGAAAGTCAT-AAGTTTCATTTATCCTAATG-AGAAGAATATGTTTATAGTGCCTAAT-
65 TGCAAACCAAA-TCATCAA-TGTCATGTATCCTAATGAAG-GGAATGTGTTTATGGTTCCCAATC
* * * * *
1393632 TATAAAATGAA-AGACG-ATAATTACTA-CAATCCA
127 T-TGAAA-GAATGGA-GAATCATTACGAGC-ATCGA
* * * *
1393665 TGTTTGTCTCATTT--GAGATCTAAGCTTTGACTT-TA-CACAAATTG-GTGAGAA-AAAAGCCT
1 TGTTTGTCTTATTTAAGAGAT-GAA-CTTTGA-TTCTATCAAAAATTGTG-GA-AAGAAAAGCTT
* * * * * ** ** * * *
1393724 TTCTTGTGAAGCCAAAGCATTAATAG-GATGTATTTTAATG-AGAAAACTATGTTTATGGTGCCT
61 TTCTTG-CAAACCAAATCATCAAT-GTCATGTATCCTAATGAAGGGAA-TGTGTTTATGGTTCCC
* * * * * *
1393787 AATCCTGAAATGAATGG-GAATTAGTATGAGTATTC-T
123 AATCTTGAAA-GAATGGAGAATCATTACGAGCA-TCGA
* * * * *
1393823 TGTTTTTCTTATTTAAAAGATAAACTTTGATTCTATCAAAAATGGTGAAAAGAAAAGCTTTTCTT
1 TGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAATTGTGGAAAGAAAAGCTTTTCTT
* * *
1393888 GCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTCTTT-TGGCTTCCCAATCTT
66 GC-AAACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTATGG-TTCCCAATCTT
* * * *
1393952 GGAAAGAATGAAGACT-GTTACGAGAATCGA
129 -GAAAGAATGGAGAATCATTACGAGCATCGA
*
1393982 TGCTTGTGTC-T-TTTAAGGGATGAACTTTGA
1 TG-TT-TGTCTTATTTAAGAGATGAACTTTGA
1394012 GTTTAAGGAA
Statistics
Matches: 5390, Mismatches: 1687, Indels: 1096
0.66 0.21 0.13
Matches are distributed among these distances:
154 8 0.00
155 115 0.02
156 279 0.05
157 638 0.12
158 1905 0.35
159 2054 0.38
160 348 0.06
161 43 0.01
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (158 bp):
TGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAATTGTGGAAAGAAAAGCTTTTCTT
GCAAACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTATGGTTCCCAATCTTGA
AAGAATGGAGAATCATTACGAGCATCGA
Found at i:1398031 original size:33 final size:33
Alignment explanation
Indices: 1397986--1398050 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
1397976 TTTGAAGCAA
* *
1397986 TGTATCAGTACAATTCATCATGTATTGATACAT
1 TGTATCAGTACAATGCATCATGTATCGATACAT
*
1398019 TGTATC-GATACAATGCGTCATGTATCGATACA
1 TGTATCAG-TACAATGCATCATGTATCGATACA
1398051 AACAGTGGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 1 0.04
33 27 0.96
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.35
Consensus pattern (33 bp):
TGTATCAGTACAATGCATCATGTATCGATACAT
Found at i:1398105 original size:20 final size:19
Alignment explanation
Indices: 1398080--1398117 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
1398070 CTGCCAGTTT
1398080 CATGTATCAATACAATTGTC
1 CATGTATCAATAC-ATTGTC
*
1398100 CATGTATCGATACATTGT
1 CATGTATCAATACATTGT
1398118 ATTGATACAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (19 bp):
CATGTATCAATACATTGTC
Found at i:1398522 original size:20 final size:19
Alignment explanation
Indices: 1398499--1398571 Score: 78
Period size: 20 Copynumber: 3.7 Consensus size: 19
1398489 TGCACCTAGA
*
1398499 TGTATCGATACAT-TATGCTT
1 TGTATCGATACATGT-T-CAT
1398519 TGTATCGATACATGTTCAT
1 TGTATCGATACATGTTCAT
*
1398538 TGTATCGATACATAG-ACAAT
1 TGTATCGATACAT-GTTC-AT
1398558 TGTATCGATACATG
1 TGTATCGATACATG
1398572 AAACTAGCAG
Statistics
Matches: 48, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
19 17 0.35
20 30 0.62
21 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.16, T:0.38
Consensus pattern (19 bp):
TGTATCGATACATGTTCAT
Found at i:1398643 original size:33 final size:33
Alignment explanation
Indices: 1398601--1398663 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 33
1398591 TACCACTATT
*
1398601 TGTATCGATACATGGT-ACATTGTATCGATATAA
1 TGTATCGATACATGATGA-ATTGTATCGATATAA
1398634 TGTATCGATACATGATGAATTGTATCGATA
1 TGTATCGATACATGATGAATTGTATCGATA
1398664 CATTGCTTCT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
33 27 0.96
34 1 0.04
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (33 bp):
TGTATCGATACATGATGAATTGTATCGATATAA
Found at i:1404968 original size:20 final size:20
Alignment explanation
Indices: 1404930--1404969 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
1404920 TTACAAATTT
1404930 CTTCATTTTCACTTCAAAATA
1 CTTCATTTTCAC-TCAAAATA
1404951 CTTCATTTTTCA-TCAAAAT
1 CTTCA-TTTTCACTCAAAAT
1404970 TATGAACAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
21 5 0.28
22 6 0.33
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.45
Consensus pattern (20 bp):
CTTCATTTTCACTCAAAATA
Found at i:1408821 original size:425 final size:423
Alignment explanation
Indices: 1408032--1408855 Score: 1028
Period size: 425 Copynumber: 1.9 Consensus size: 423
1408022 TTTTATAGAT
* * ** * *
1408032 AAACTTTGATTCTATCCAAAATGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGC
1 AAACTTTAATTCCATCCAAAATGGCAGAAAGAAAACCTTTTCTTGTGACACCAAAACATCAATGC
** ** **
1408097 CTTGTATCCTAATAAAGGGAATGTGTTTTGGCCTCCCAATCTTGAAAAGAATGGAGCCTGTTACA
66 CTCATATCCTAATAAAGGGAATGTGTTTTGGCCTCCCAATCTTGAAAAGAATGGAAACTACTACA
* * * **
1408162 GGAATTAATGTTATCTTATTTAAGAGATAAAGTTTGATTTTATGGAAATTAAGGCAAAGAAAAGA
131 GGAATCAATGTTACCTTATTTAAGAGATAAACTTTGATTTTAAAGAAA-TAAGGCAAAGAAAAGA
* * ** *
1408227 TTTCCAAGCAAAATAAAATCGCCAATATTTTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
195 TTTCCAAGCAAAAGAAAATCACCAATATCATTTATCCTAATGAAGAGAATGTGTTTATAGTGCCT
* * *
1408292 AATTACAAAATGAGTAAAAATCAATAGTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAC
260 AATCACAAAATGAATAAAAATCAATAGTAGAATCCATGTTTGTCTCATTTAAGGCACAAACTTAC
* * * *
1408357 ACTTTACAAAAATTGGTGAGAAAAATGCCTTTTTTGCAAAATCGAAAC-ATCAATATCGTGTATT
325 ACTTTACAAAAATTAGTGAGAAAAATGCCTTTCTTGCAAAA-CCAAACTATCAATATCGTGTATC
*
1408421 GTAATGAGAAAACCATGATGTATTATTTAAGAGAC
389 CTAATGAGAAAACCATGATGTATTATTTAAGAGAC
* * * * * *
1408456 AAACTTTAATTCCATCGAAAATGGCAGAAAGAAAACCTTTTCTTGTTACTCCAAAACCTTAATGT
1 AAACTTTAATTCCATCCAAAATGGCAGAAAGAAAACCTTTTCTTGTGACACCAAAACATCAATGC
* * * *
1408521 CTCATATCCTAATAAAGGGATTGTGTTTTGGCTTCCCAATCTTGAAAATAATGGAAACTACTA-T
66 CTCATATCCTAATAAAGGGAATGTGTTTTGGCCTCCCAATCTTGAAAAGAATGGAAACTACTACA
* * * * *
1408585 GAGAATCGATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAAGATAA-AAGGGCAATGAAA
131 G-GAATCAATG-TTACCTTATTTAAGAGATAAACTTTGATTTTAAAGA-AATAA-GGCAAAGAAA
* *
1408649 AGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAAGAGAATGTGTTTATAGTG
192 AGATTTCCAAGCAAAAGAAAATCACCAATATCATTTATCCTAATGAAGAGAATGTGTTTATAGTG
* * * * * *
1408714 TCTAATCATAAAATGAATGAAGATC-ATTGCTAGAATCCGTGTTTGTCTCATTTAAGGCACGAAA
257 CCTAATCACAAAATGAATAAAAATCAATAG-TAGAATCCATGTTTGTCTCATTTAAGGCAC-AAA
* * * *
1408778 -TTAGACTTTACCAAAATTAGTGGGAGAAATGCCTTTCTTGCAAAACCAAACTATCAATATCGTG
320 CTTACACTTTACAAAAATTAGTGAGAAAAATGCCTTTCTTGCAAAACCAAACTATCAATATCGTG
1408842 TATCCTAATGAGAA
385 TATCCTAATGAGAA
1408856 GACTATGTTC
Statistics
Matches: 336, Mismatches: 57, Indels: 13
0.83 0.14 0.03
Matches are distributed among these distances:
423 1 0.00
424 124 0.37
425 206 0.61
426 5 0.01
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (423 bp):
AAACTTTAATTCCATCCAAAATGGCAGAAAGAAAACCTTTTCTTGTGACACCAAAACATCAATGC
CTCATATCCTAATAAAGGGAATGTGTTTTGGCCTCCCAATCTTGAAAAGAATGGAAACTACTACA
GGAATCAATGTTACCTTATTTAAGAGATAAACTTTGATTTTAAAGAAATAAGGCAAAGAAAAGAT
TTCCAAGCAAAAGAAAATCACCAATATCATTTATCCTAATGAAGAGAATGTGTTTATAGTGCCTA
ATCACAAAATGAATAAAAATCAATAGTAGAATCCATGTTTGTCTCATTTAAGGCACAAACTTACA
CTTTACAAAAATTAGTGAGAAAAATGCCTTTCTTGCAAAACCAAACTATCAATATCGTGTATCCT
AATGAGAAAACCATGATGTATTATTTAAGAGAC
Found at i:1410981 original size:954 final size:937
Alignment explanation
Indices: 1408542--1411075 Score: 2824
Period size: 954 Copynumber: 2.7 Consensus size: 937
1408532 ATAAAGGGAT
* * * * * ** * * **
1408542 TGTGTTTTGGCTTCCCAATCTTGAAAATAATGGAAACTACTATGAGAA-TCGATGCTTGCCTTAT
1 TGTGTTTTAGCTTCCAAATCTTGAAAAGAATCGATACTGTTACGAGAACT-GAAGCTTATCTTAT
* *
1408606 T-TAAGGGATGAACTTTGATTTTAAAGATAAA-AGGGCAATGAAAAGATTTCCATGCAAAAGAAA
65 TAT-AGGGATGAACTTTGATTTTAAGGA-AAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
*
1408669 ATCATCAATATCATTTATCCTAATGA-AGAGAATGTGTTTATAGTGTCTAATCATAAAATGAATG
128 ATCATCAATATCATTTATCCTAATGAGA-AGAATGTGTTTATAGTGCCTAATCATAAAAT-AATG
* *
1408733 AAGATC-ATTGCTAGAATCCGTGTTTGTCTCATTTAAGGCACGAAATTAGACTTTACCAAAATTA
191 AAGATCAATAG-TAGAATCCGTGTTTGTCTCATTTAAGGCACGAAATTAGACTTTACAAAAATT-
* * * * * *
1408797 GTGGGAGAAATGCCTTTCTTGCAAAACCAAACTATCAATATCGTGTATCCTAATGAGAAGACTAT
254 GTGGGAAAAATGCCTTTCTTGCGAAACAAAAC-ATTAATATCGTGTATCCTAATAAGAAGACCAT
* * * *
1408862 GTTCAA-GGTGCCTAATCTTTAAAGGAATAGTGATTAGTATGAGTATTCATGTTTGTCTTATTT-
318 GTT-AATGGTGCCTAATCTTGAAA-GAATAGGGATTAGTATGACTATTCTTGTTTG-CTTATTTA
* * * * *
1408925 TAGAGACAAACATTGATTCTATCAAAAACGATGGAAAGAAAACCTTTTCTAGCAACACCAAAGCA
380 T-GAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAACTTTTCTTGCGACACCAAAGCA
* * * *
1408990 TCAATGTCATGTATCCTAATG-AAGAGAATGTGGTTTGGCTTCCTAACCTGGAAAAGAATGGAGA
444 TCAATGTCATGTATCCTAATGAAAG-GAATGTGTTTTGGCTTCCAAATCTTGAAAAGAATGGAGA
* * * * **
1409054 CTGTTACAAGAATCGATGCTTGTGTTATTTAGGGGATAAACTTCAATTTT-AGGA-A-A----AT
508 CTGTTACAAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAGATAGGGCA-
* * * *
1409112 AGG-G-C-A-TTTCGA-GCAAAAGAAAATTCTCAATATCATTTATCCTAATGAGGAGAATGTGTT
572 AGGAGACGATTTTC-ATGCAAAAAAAAAATATCAATATCATTTATCCTAATGAAGAGAATGTGTT
* * * * *
1409172 TATATTGCCTAATCACAAAATAAGTGAAGATCAATAGTAGAATCCATGTTTGTCTCATTTGAGGC
636 TATAGTGCTTAATCACAAAATAAGCGAAAATCAATAGTAGAATCCATGTTTATCTCATTTGAGGC
* * * * * * * * * *
1409237 ACGAACTTAGAGTTTATAGAAATTTGTGGGAAAAATGTCTTTCTTATGAAACTAAAACATCAGTA
701 ACCAACTTAGACTTTACAGAAAATTGTAGAAAAAATGCCTTTCTTACGAAACCAAAACATCAATA
* * * * *
1409302 TCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATATTGAAAAGAATGGGGATTAGTAT
766 TCATGTATCCTAACGAGAAGACCATGTTTATAGTGCCGAATATTGAAAAGAATAGGGATTAGTAT
*** * *
1409367 TGTTTGAATTATTTAAGTTACAAACTTTGACTCTATCAGAAATGGTGGAAGGAAAAGCTTCTCTT
831 TGTTTGAATTATTTAAAAGACAAACTTTGACTCTATCAAAAATGGTGGAAAGAAAAGCTTCTCTT
* *
1409432 GCGACACCAAAGCATCAATGTCTTGCATCTAAATGAAGGGAA
896 GCGACACCAAAGCATCAATGTCATGCATCTAAATGAAAGGAA
* * * *
1409474 TGTGTTTTGGCTTCCAAATCTTGAAAAGAATGGATACTGTTACGAGAATTGATGCTTATCTTATT
1 TGTGTTTTAGCTTCCAAATCTTGAAAAGAATCGATACTGTTACGAGAACTGAAGCTTATCTTATT
* * * * *
1409539 TTAGGGATGAACTTTTATTTTAAGGAGAATAGAGG-AAAGAGAGGATGTT-CATGCAAAA-AAAA
66 ATAGGGATGAACTTTGATTTTAAGGAAAATAG-GGCAAAGAAAAGAT-TTCCATGCAAAAGAAAA
* * *
1409601 TGATCAATATCATTTATCCTAATAACG-AGAATGTGTTTATAGTGCCT-ATACATAAAATGAGTG
129 TCATCAATATCATTTATCCTAATGA-GAAGAATGTGTTTATAGTGCCTAAT-CATAAAAT-AATG
* * * * *
1409664 AAGATCAATAGTAGAATCCATGTTTATCTCATTTAAGGCAC-AATTTTGACTTTACAAAACTTGG
191 AAGATCAATAGTAGAATCCGTGTTTGTCTCATTTAAGGCACGAAATTAGACTTTACAAAAATT-G
*
1409728 TGGG-AAAATGCCTTTCTTGCGAAACAAAA-ACTTCAATATCGTGTATCCTAATAAGAAGACCGT
255 TGGGAAAAATGCCTTTCTTGCGAAACAAAACA-TT-AATATCGTGTATCCTAATAAGAAGACCAT
* *
1409791 GTTAATGGTGCCTAATCTTGGAAAGAATAGGGATTAGTATGACTATTCTTGTTTGTGTTATTTAA
318 GTTAATGGTGCCTAATCTT-GAAAGAATAGGGATTAGTATGACTATTCTTGTTTG-CTTATTTAT
* * * * *
1409856 AAGGCAAACTTTGATTCTATAAAAAACGGGGGAAAGAAATACTTTTCTTGCGACACCAAAGCATC
381 GAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAACTTTTCTTGCGACACCAAAGCATC
* *
1409921 AATGTCATGTATCCTAAAGAAGGGAATGTGTTTTGGCTTCCAAATCTT-AACAAGAATGGAGACT
446 AATGTCATGTATCCTAATGAAAGGAATGTGTTTTGGCTTCCAAATCTTGAA-AAGAATGGAGACT
*
1409985 GTTACTAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAGAGTAGGGCAAG
510 GTTACAAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAGA-TAGGGCAAG
* * * * *
1410050 GAGACGATTTTTATGCAAAAAAAAAAATATCATTATAATTTATCCTAATAAAAAGAATGTGTTTA
574 GAGACGATTTTCATGC-AAAAAAAAAATATCAATATCATTTATCCTAATGAAGAGAATGTGTTTA
* ** *
1410115 TAGTGCTTATTCGTAAAATGAGCGAAAATCAATAGTAGAATCCATGTTTATCTCATTTGAGGCAC
638 TAGTGCTTAATCACAAAATAAGCGAAAATCAATAGTAGAATCCATGTTTATCTCATTTGAGGCAC
*
1410180 CAACTTCA-ACTTTACA-AAAATTGATAGAAAAAATGCCTTTCTTGCGAAACCAAAACATCAATA
703 CAACTT-AGACTTTACAGAAAATTG-TAGAAAAAATGCCTTTCTTACGAAACCAAAACATCAATA
* * * * *
1410243 TCATGCT-TTCTTACGAGAAGACCATGATGCTTCTAGTGCCGATTCTTGAAAAGAATAGGGATTA
766 TCATG-TATCCTAACGAGAAGACCATG-T--TTATAGTGCCGAATATTGAAAAGAATAGGGA-T-
* *
1410307 GTAGGACTATTCTTGTTTGTATTATTTAAAAGACAAACTTTGATTCTATCAAAAATGGTGGAAAG
825 -TA-G--TA---TTGTTTGAATTATTTAAAAGACAAACTTTGACTCTATCAAAAATGGTGGAAAG
* * * * * *
1410372 AAAAGTTTTTCTTGCGATACTAAAGCATCAATGTCATGTATCTTAATGAAAGGAA
883 AAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGCATCTAAATGAAAGGAA
* * * *
1410427 TGTGTTTTTAG-TTCCCAATCTTTAAAAGAATCGA-AGCTGTTGCGAGAACTGAAGCTTGTCTTA
1 TGTG-TTTTAGCTTCCAAATCTTGAAAAGAATCGATA-CTGTTACGAGAACTGAAGCTTATCTTA
* * *
1410490 TTGAT-GTGATTAACTTTGGTTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
64 TT-ATAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* *
1410554 ATCATCAATATCATTTATCCTAATGAGAAGAATGTGTCTATAGTGCCTAATCACAAAATAATTGA
128 ATCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTATAGTGCCTAATCATAAAATAA-TGA
* * * *
1410619 AGATCAAAAGTAGAATCCGTGTTTGTCTCATTTGAGGCACGAACTTAGAGTTTACAAAAATTGCT
192 AGATCAATAGTAGAATCCGTGTTTGTCTCATTTAAGGCACGAAATTAGACTTTACAAAAATTG-T
* * * *
1410684 GGGAAAAATGCC-TTCTTGCGAAACTAAAACATTAATATCATGTATCATATTTAGAAGACCATGT
256 GGGAAAAATGCCTTTCTTGCGAAAC-AAAACATTAATATCGTGTATCCTAATAAGAAGACCATGT
* * * * * **
1410748 TTATGGTGCCTATTGTTGAAAAAATGGGGATTAGTATGACTATTCTTGTTTGCATTATTTATGTT
320 TAATGGTGCCTAATCTTGAAAGAATAGGGATTAGTATGACTATTCTTGTTTGC-TTATTTATGAG
* * ** * *
1410813 ACAAACTTTGATTCTATCGAAAACGGTGGAAGGAAAGGCTTCTCTTGTGACACCAAAGCATCAAT
384 ACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAAT
** * * * *
1410878 GTCATGTATCCTTTTGAAAGGAATGTGTTTTGGATTCCAAATCTTGAAAAGAATGGATATTTTTA
449 GTCATGTATCCTAATGAAAGGAATGTGTTTTGGCTTCCAAATCTTGAAAAGAATGGAGACTGTTA
* *
1410943 CGAGAATTGACGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAGAATAGGGC-AGAGAG
514 CAAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAG-ATAGGGCAAG-GAG
* * * *
1411007 AGGATTTTCATGC-AAAAGAAAATCATCAATATCATTTAT-CTAAATGAAGAGAATGCGTTTATC
577 ACGATTTTCATGCAAAAAAAAAAT-ATCAATATCATTTATCCT-AATGAAGAGAATGTGTTTATA
1411070 GTGCTT
640 GTGCTT
1411076 TCTTATGAGA
Statistics
Matches: 1349, Mismatches: 188, Indels: 109
0.82 0.11 0.07
Matches are distributed among these distances:
927 1 0.00
928 5 0.00
929 247 0.18
930 33 0.02
931 95 0.07
932 99 0.07
933 7 0.01
936 3 0.00
937 2 0.00
938 1 0.00
939 2 0.00
940 11 0.01
941 159 0.12
942 3 0.00
944 25 0.02
945 1 0.00
947 2 0.00
948 1 0.00
950 2 0.00
952 16 0.01
953 224 0.17
954 317 0.23
955 78 0.06
956 14 0.01
957 1 0.00
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.32
Consensus pattern (937 bp):
TGTGTTTTAGCTTCCAAATCTTGAAAAGAATCGATACTGTTACGAGAACTGAAGCTTATCTTATT
ATAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATC
ATCAATATCATTTATCCTAATGAGAAGAATGTGTTTATAGTGCCTAATCATAAAATAATGAAGAT
CAATAGTAGAATCCGTGTTTGTCTCATTTAAGGCACGAAATTAGACTTTACAAAAATTGTGGGAA
AAATGCCTTTCTTGCGAAACAAAACATTAATATCGTGTATCCTAATAAGAAGACCATGTTAATGG
TGCCTAATCTTGAAAGAATAGGGATTAGTATGACTATTCTTGTTTGCTTATTTATGAGACAAACT
TTGATTCTATCAAAAACGGTGGAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAATGTCATGT
ATCCTAATGAAAGGAATGTGTTTTGGCTTCCAAATCTTGAAAAGAATGGAGACTGTTACAAGAAT
TGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAGATAGGGCAAGGAGACGATTTTC
ATGCAAAAAAAAAATATCAATATCATTTATCCTAATGAAGAGAATGTGTTTATAGTGCTTAATCA
CAAAATAAGCGAAAATCAATAGTAGAATCCATGTTTATCTCATTTGAGGCACCAACTTAGACTTT
ACAGAAAATTGTAGAAAAAATGCCTTTCTTACGAAACCAAAACATCAATATCATGTATCCTAACG
AGAAGACCATGTTTATAGTGCCGAATATTGAAAAGAATAGGGATTAGTATTGTTTGAATTATTTA
AAAGACAAACTTTGACTCTATCAAAAATGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCAT
CAATGTCATGCATCTAAATGAAAGGAA
Found at i:1413540 original size:473 final size:472
Alignment explanation
Indices: 1412013--1413721 Score: 2078
Period size: 473 Copynumber: 3.6 Consensus size: 472
1412003 ATGCTTATGG
*** * * * *
1412013 TGACTATTCTTGTTTGTATTATTTAAGTTAAAAACTTGGATTCTATCAAAAATGGTGGAAGAAAA
1 TGACTATTCTTGTTTGTATTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAA
* * ** * *
1412078 GGCTTCTCTTGCGATACCAAAGCATCAATGTCATGCGTCCTAATGAAGGGAATGTGTTTTCGCTT
66 GGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTGGCTT
* * * * * * *
1412143 CCGAATCTTGAAAAGGATGGATATTGTTATGAGAATTGTTGCTTATCTTATATT-AGGGATGAAC
131 CCAAATCTTGAAAAGAATGGAGACTGTTACGAGAATTGATGCTTGTCTTAT-TTAAGGGATGAAC
* *
1412207 TTTTATTTTAAGGAGAATAGAGCAAA-AAGAGGATTTTTCATGCAAAA-AAAATCATCAATATCA
195 TTTGATTTTAAGGAGAATAGGGCAAAGAA-AGGA-TTTTCATGCAAAAGAAAATCATCAATATCA
* * *
1412270 TTTATCCTAACAACG-AGAATGTGTTTATAGTGCCT-ATACATAAAATGAGTGAAGATCAACAGT
258 TTTATCCTAATAA-GAAGAATGTGTTTATAGTGCCTAAT-CATAAAATAAGTGAAGATCAAAAGT
* * * *
1412333 AGAATCCATGTTTATCTCATTTAAGGCACAATTTTCACTTTACAAAAATTGGTGGGAAAATGCCT
321 AGAATCCATGTTTATCTCATTTGAGGCACAA-CTTAACTTTACAAAAATTGATGGGAAAATGCCT
* *
1412398 TTCTTGCGAAACAAAAAC-TTCAATATCATGTATCCTAATAAGAAGACCATGTTAATGGTGCCTA
385 TTCTTGCGAAACCAAAACATT-AATATCATGTATCCT-ATAAGAAGACCATGTTTATGGTGCCTA
*
1412462 ATCTTGAAAAGAATAGGGATTAGTA
448 TTCTTGAAAAGAATAGGGATTAGTA
* * * *
1412487 TGACTATTCTTGTTTGTGTTACTTAAAAGGCAAACTTTGATTCTATCGAAAACGGTGG-AGAGAA
1 TGACTATTCTTGTTTGTATTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAG-GAA
** * * *
1412551 ATACTTTTCTTGCGACACTAAAGCATCAATGTCATGTATCCTAAAGAAGGGAATGTGTTTTGGCT
65 AGGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTGGCT
* *
1412616 TCCAAATCTT-AACAAGAATGGAGACTGTTACTAGAATTGATGCTTGTCTTATTTAAGGTATGAA
130 TCCAAATCTTGAA-AAGAATGGAGACTGTTACGAGAATTGATGCTTGTCTTATTTAAGGGATGAA
* * * * * * * *
1412680 CTTTGATTTTAAGGAGAATAGGGCAAGGAGACGATTTTTATGCAAAAAAAAAT-GTCATTATAAT
194 CTTTGATTTTAAGGAGAATAGGGCAAAGAAAGGATTTTCATGCAAAAGAAAATCATCAATATCAT
* * * * * *
1412744 TTATCCTAATAAGAAGAATGTGTTTATAGTGCTTATTCGTAAAA-AGAGCGAAAATCAATAGTAG
259 TTATCCTAATAAGAAGAATGTGTTTATAGTGCCTAATCATAAAATA-AGTGAAGATCAAAAGTAG
*
1412808 AATCCATGTTTATCTCATTTGAGGCACCAACTTCAACTTTACAAAAATTGATGGAAAAAATGCCT
323 AATCCATGTTTATCTCATTTGAGGCA-CAACTT-AACTTTACAAAAATTGATGG-GAAAATGCCT
* * * ** * * *
1412873 TTCTTGCGAAACCAAAACATCAATATCATGCTTTCTTACGAGAAGACCGTAATGCTTCTGGTGTC
385 TTCTTGCGAAACCAAAACATTAATATCATG-TATCCTATAAGAAGACC---ATGTTTATGGTGCC
* *
1412938 GATTCTTGAAAAGACTAGGGATTAGTA
446 TATTCTTGAAAAGAATAGGGATTAGTA
* * *
1412965 GGACTATTCTTGTTTGTATTATTTAAAAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAA
1 TGACTATTCTTGTTTGTATTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAA
* * * * * *
1413030 AGTTTTTCTTGCGATACTAAAGCATCAATGTCATGTATCTTAATGAAAGGAATGTGTTTTTAG-T
66 GGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTG-TTTTGGCT
* * * * * * *
1413094 TCCCAATCTTGAAAAGAATCGAGACTGTTGCGAGAACTGAAGCTTGTCTTATTGAAGGGATTAAC
130 TCCAAATCTTGAAAAGAATGGAGACTGTTACGAGAATTGATGCTTGTCTTATTTAAGGGATGAAC
* * * * *
1413159 TTTGGTTTTTAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATT
195 TTTGATTTTAAGGAGAATAGGGCAAAGAAAGGATTTTCATGCAAAAGAAAATCATCAATATCATT
* * * *
1413224 TATCCTAATGAGAAGAATGTGTCTATAGTGCCTAATCACAAAATAATTGAAGATCAAAAGTAGAA
260 TATCCTAATAAGAAGAATGTGTTTATAGTGCCTAATCATAAAATAAGTGAAGATCAAAAGTAGAA
* * * * *
1413289 TCCGTGTTTGTCTCATTTGAGGCATGAACTTAGAGTTTACAAAAATTGCTGGGAAAATGCC-TTC
325 TCCATGTTTATCTCATTTGAGGCA-CAACTTA-ACTTTACAAAAATTGATGGGAAAATGCCTTTC
* *
1413353 TTGCGAAACCAAAACATTAATATCATGTATCCTATTTAGAAGACCATGTTTATGGTGCCTATTGT
388 TTGCGAAACCAAAACATTAATATCATGTATCCTA-TAAGAAGACCATGTTTATGGTGCCTATTCT
*
1413418 TGAAAA-AATGGGGATTAGTA
452 TGAAAAGAATAGGGATTAGTA
***
1413438 TGACTATTCTTGTTTGTATTATTTAAGTTACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAA
1 TGACTATTCTTGTTTGTATTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAA
** ** *
1413503 GGCTTTTCTTATGACACCAAAGCATCAATGTCATGTATCCTTTTGAAAGGAATGTGTTTTGGATT
66 GGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTGGCTT
* * *
1413568 CCAAATCTTGAAAAGAATGGATATTGTTACGAGAATTGATGCTTGTCTTATTTAAAGGATGAACT
131 CCAAATCTTGAAAAGAATGGAGACTGTTACGAGAATTGATGCTTGTCTTATTTAAGGGATGAACT
*
1413633 TTGATTTTAAGGAGAATAGGGCAAAGAGAGGATTTTCATGCAAAAGAAAATCATCAATATCATTT
196 TTGATTTTAAGGAGAATAGGGCAAAGAAAGGATTTTCATGCAAAAGAAAATCATCAATATCATTT
**
1413698 ATCAAAATTAAG-AGAATGTGTTTA
261 ATCCTAA-TAAGAAGAATGTGTTTA
1413722 CCGTGCTTTC
Statistics
Matches: 1045, Mismatches: 165, Indels: 51
0.83 0.13 0.04
Matches are distributed among these distances:
472 6 0.01
473 354 0.34
474 233 0.22
475 45 0.04
476 10 0.01
477 37 0.04
478 245 0.23
479 114 0.11
480 1 0.00
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.33
Consensus pattern (472 bp):
TGACTATTCTTGTTTGTATTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAA
GGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTGGCTT
CCAAATCTTGAAAAGAATGGAGACTGTTACGAGAATTGATGCTTGTCTTATTTAAGGGATGAACT
TTGATTTTAAGGAGAATAGGGCAAAGAAAGGATTTTCATGCAAAAGAAAATCATCAATATCATTT
ATCCTAATAAGAAGAATGTGTTTATAGTGCCTAATCATAAAATAAGTGAAGATCAAAAGTAGAAT
CCATGTTTATCTCATTTGAGGCACAACTTAACTTTACAAAAATTGATGGGAAAATGCCTTTCTTG
CGAAACCAAAACATTAATATCATGTATCCTATAAGAAGACCATGTTTATGGTGCCTATTCTTGAA
AAGAATAGGGATTAGTA
Found at i:1415806 original size:474 final size:473
Alignment explanation
Indices: 1413765--1416290 Score: 2904
Period size: 474 Copynumber: 5.4 Consensus size: 473
1413755 TGGTGCTGAT
*
1413765 TCTTGAAAAGAATAGGGATTAGTAGGACTATTCTTGTTTGTATTATTTAAAAGACAAACTTTGAT
1 TCTTGAAAAGAAT-GGGATTAGTATGACTATTCTTGTTTGTATTATTTAAAAGACAAACTTTGAT
* * * * *
1413830 TCTGTCAAAAACGGTGAAAAGAAAAACTTTTCTTGCGACAGCAAAGCATCAATGTCATGCATCCT
65 TCTATCAAAAATGGTGGAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT
* * *
1413895 AATGAAGGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATCGAGACTATTACAAGAACTGATG
130 AATGAAGGGAATGTG-TTTTGGTTCCAAATCTTGAAAAGAATCGAGACTATTACGAGAATTGATG
* *
1413960 TTTGTCTTATTGAA---A-GAA-TCTTG-----AA--A-AA-AGGGCAAAGAAAAGA-TTTCTAC
194 CTTGTCTTATTTAAGGGATGAACT-TTGATTTTAAGGAGAATAGGGCAAAGAAAAGATTTTC-AC
* * * * *
1414010 GCACAACAAAATCATCAATATCATTTATCCTAATGAG-AGAATGTGTTTATAGTGCCTAACCACA
257 GCAAAAAAAAATCATCAATATCATTTATCCTAATAAGAAGAATGTGTTTATAGTGCCTAATCATA
* * * * * * * *
1414074 AAATAATTGAAGATTAATTGTAGAATTCATGTTTGTCTCATTTGAGGCACGAGCTTAGAGTTTAT
322 AAATAAGTGAAGATCAATAGTAGAATCCATGTTTATCTCATTTGAGGCACGAACTTAGACTTTAC
*
1414139 AGAAATTGGTGGGAAAAATGCCTTTCTTG-GAAAACCAAAACATCAATATCATGTATCCTAATGA
387 AAAAATTGGT-GGAAAAATGCCTTTCTTGCG-AAACCAAAACATCAATATCATGTATCCTAATGA
* * *
1414203 GAAGACCATGCTGATGGTGCCTAT
450 GAAGACCATGTTAATGGTGCCTAA
* * *** * *
1414227 TGTTGAAAAGAATGGAGATTAGCATGACTATTCTTGTTTGTATTATTTAAGTTAAAAACTTGGAT
1 TCTTGAAAAGAATGG-GATTAGTATGACTATTCTTGTTTGTATTATTTAAAAGACAAACTTTGAT
* * ** ** *
1414292 TCTATCAAAAACGGTGGAAGGAAAGGCTTCACTTGCGACACCAAAGCATCAATGTCATGCATCCT
65 TCTATCAAAAATGGTGGAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT
* * *
1414357 AATGAAGGGAATGTGTTTTGGCTTCCAAATATTGAAAAGAATGGATACTATTACGAGAATTGATG
130 AATGAAGGGAATGTGTTTTGG-TTCCAAATCTTGAAAAGAATCGAGACTATTACGAGAATTGATG
* * * * *
1414422 CTTGTCTTATTTTAGGGATGAACTTTGATTTTAAGGAGAATAGAGCAAAGAGAGGATTTTCAAGC
194 CTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAGAATAGGGCAAAGAAAAGATTTTCACGC
* * *
1414487 AAAAAAAAAAATAATCAATATCATTTATCCTTATAACAAGAATGTGTTTATAGTGCCT-ATACAT
259 --AAAAAAAAATCATCAATATCATTTATCCTAATAAGAAGAATGTGTTTATAGTGCCTAAT-CAT
* * * * * *
1414551 AAAATGAGTGAAGAAT-AATAGTAGAATCCATGTTTATCTCAGTTAAGGCA-TAATTTTGACTTT
321 AAAATAAGTGAAG-ATCAATAGTAGAATCCATGTTTATCTCATTTGAGGCACGAACTTAGACTTT
* * * * ** *
1414614 ACAAAAATTGGTGGGAAAATGCCTTTCATGCGAAACAAAAACTTCAATATCGCGTATCTTAATGA
385 ACAAAAATTGGTGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCATGTATCCTAATGA
*
1414679 GAAGACCATGTTAATGGTGCCGAA
450 GAAGACCATGTTAATGGTGCCTAA
*
1414703 TCTTGAAAAGAATAGGGATTAGTATGACTATTCTTGTTTGTATTATTTGAAAGACAAACTTTGAT
1 TCTTGAAAAGAAT-GGGATTAGTATGACTATTCTTGTTTGTATTATTTAAAAGACAAACTTTGAT
* * *
1414768 TCTATCAAAAATGGTGGAAATAAATACTTTTCTTGCGACACCAAAGCATTAATGTCATGTATCCT
65 TCTATCAAAAATGGTGGAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT
* * * *
1414833 AAAGAAGGGAATGTGTTTTGGCTT-C----C-----AA-AATGGAGACTGTTACTAGAATTGATG
130 AATGAAGGGAATGTGTTTTGG-TTCCAAATCTTGAAAAGAATCGAGACTATTACGAGAATTGATG
* * * *
1414887 CTTCTCATT-TTTAAGGGATG-ACTTTGATTTTAAGGAGAATAGGGCAATGAGACA-ATTTTTAC
194 CTTGTC-TTATTTAAGGGATGAACTTTGATTTTAAGGAGAATAGGGCAAAGA-AAAGATTTTCAC
* * * *
1414949 GCCAAAAAAAAT-ATCAATATAATTTATCCTAATAAGAAGAATGTGTTTATAGTGCATATTCATA
257 GCAAAAAAAAATCATCAATATCATTTATCCTAATAAGAAGAATGTGTTTATAGTGCCTAATCATA
* * * *
1415013 AAATAAGCGAAAATCAATAGTAGAATCCATGTTTATCTCATTTGAGGCACCAACTTCGACTTTAC
322 AAATAAGTGAAGATCAATAGTAGAATCCATGTTTATCTCATTTGAGGCACGAACTTAGACTTTAC
* * * *
1415078 AAAAATTGGTGGAAAAAATGCCTTTCTTGCGAAACCAAAAGATCAATATCGTGCATTCTAATGAG
387 AAAAATTGGTGG-AAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCATGTATCCTAATGAG
**
1415143 AAGACCATGATGTTTTTGGTG-CTGAA
451 AAGACC---ATGTTAATGGTGCCT-AA
* *
1415169 TCTTGAAAAGAATGAGGATTAGTAGGACTATTCTTGTTTGTATTATTTAAAAGATAAACTTTGAT
1 TCTTGAAAAGAATG-GGATTAGTATGACTATTCTTGTTTGTATTATTTAAAAGACAAACTTTGAT
** * *
1415234 TCTAT-AGAAAATGGTGGAAAGAAAAGTTTTTCTTGCGATACCAAAGCATCAATGTCATGTATCT
65 TCTATCA-AAAATGGTGGAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCC
* * * * * *
1415298 TAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATCAAGACTATTTCGAGAACTGAA
129 TAATGAAGGGAATGTG-TTTTGGTTCCAAATCTTGAAAAGAATCGAGACTATTACGAGAATTGAT
* * * * * * * * *
1415363 GCTTGTCTTATTAAAGGGATTAACTTTGGTTTTAAGCAAAATGGGGCGAAGAAAAGATTTCCATG
193 GCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAGAATAGGGCAAAGAAAAGATTTTCACG
* ** * * *
1415428 CAGAGGAAAATCATCAATATCATTTATCCTAATAAGAAGAATATGTCTATAGTGCCTAATCACAA
258 CAAAAAAAAATCATCAATATCATTTATCCTAATAAGAAGAATGTGTTTATAGTGCCTAATCATAA
* * * * *
1415493 AATAATTGATGATCAAAAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAGTTTACA
323 AATAAGTGAAGATCAATAGTAGAATCCATGTTTATCTCATTTGAGGCACGAACTTAGACTTTACA
* * * *
1415558 GAAATTGGTGGTAAAAATGCC-TTCTTGCAAAACCAAAACATCAATATCATGTATCCTATTTAGA
388 AAAATTGGTGG-AAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCATGTATCCTAATGAGA
* *
1415622 AGACCATGTTTATGGTGCCTAT
452 AGACCATGTTAATGGTGCCTAA
* ***
1415644 TGTTGAAAA-AATGGGAATTAGTATGACTATTCTTGTTTGTATTATTTAAGTTACAAACTTTGAT
1 TCTTGAAAAGAATGGG-ATTAGTATGACTATTCTTGTTTGTATTATTTAAAAGACAAACTTTGAT
* * ** * *
1415708 TCTATCAAAAAAGGTGGAAGGAAAGGCTTCTCTTGCGACACCAAAGCATCAATATCATGTATCCT
65 TCTATCAAAAATGGTGGAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT
* * * * * * * *
1415773 ATTGAAGGGAATGTGTTTTGGATTCCAAATCTTGGAAATAATGGATATTGTTACGAGAATTGAGG
130 AATGAAGGGAATGTGTTTTGG-TTCCAAATCTTGAAAAGAATCGAGACTATTACGAGAATTGATG
* * * *
1415838 CTTGTCTTATTTAAGGGATGAACTTCGATTTTAAGGAGAATAGGGCAAAGAGAGGATTTTCATGC
194 CTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAGAATAGGGCAAAGAAAAGATTTTCACGC
* * * *
1415903 AAAAGAAAATCATCAATATCATTTAT-CTAAATAAGGAGAATGTGTTTATAGTGCCTATTGATAA
259 AAAAAAAAATCATCAATATCATTTATCCT-AATAAGAAGAATGTGTTTATAGTGCCTAATCATAA
* * * * * *
1415967 AATGAGAGAAGATCTACAGTAGAATCCATGTTTATCTTATTTGAGGCAC-AACTTCGACTTTACA
323 AATAAGTGAAGATCAATAGTAGAATCCATGTTTATCTCATTTGAGGCACGAACTTAGACTTTACA
* *
1416031 AAAATTGGTGAGAAAAATGCTTTTCTTGCGAAACCAGAACATCAATATCATGTATCCTAATGAGA
388 AAAATTGGTG-GAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCATGTATCCTAATGAGA
1416096 AGACCATGTTAATGGTGCCTAA
452 AGACCATGTTAATGGTGCCTAA
* * * *
1416118 TCTTGAAAAAAAAAGGGGATTAGTATGACTATTCCTGTTTGTTTTATTTAAAACG-CAAACTTTG
1 TCTTG--AAAAGAATGGGATTAGTATGACTATTCTTGTTTGTATTATTTAAAA-GACAAACTTTG
* *
1416182 ATTCTATCAAAAATGGTGGAAAGAAATACTTTTCTTGCGACACCAAAGCATCAATGTTATGTATC
63 ATTCTATCAAAAATGGTGGAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* *
1416247 CTAATGAAGTGAATGTGTTTTGGTTTCCAAATCTTGAAATGAAT
128 CTAATGAAGGGAATGTGTTTTGG-TTCCAAATCTTGAAAAGAAT
1416291 AGGGATTAAT
Statistics
Matches: 1736, Mismatches: 265, Indels: 112
0.82 0.13 0.05
Matches are distributed among these distances:
460 2 0.00
461 94 0.05
462 208 0.12
463 49 0.03
464 36 0.02
465 42 0.02
466 153 0.09
467 8 0.00
471 3 0.00
473 41 0.02
474 361 0.21
475 37 0.02
476 347 0.20
477 91 0.05
478 140 0.08
479 124 0.07
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (473 bp):
TCTTGAAAAGAATGGGATTAGTATGACTATTCTTGTTTGTATTATTTAAAAGACAAACTTTGATT
CTATCAAAAATGGTGGAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTA
ATGAAGGGAATGTGTTTTGGTTCCAAATCTTGAAAAGAATCGAGACTATTACGAGAATTGATGCT
TGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAGAATAGGGCAAAGAAAAGATTTTCACGCAA
AAAAAAATCATCAATATCATTTATCCTAATAAGAAGAATGTGTTTATAGTGCCTAATCATAAAAT
AAGTGAAGATCAATAGTAGAATCCATGTTTATCTCATTTGAGGCACGAACTTAGACTTTACAAAA
ATTGGTGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCATGTATCCTAATGAGAAGAC
CATGTTAATGGTGCCTAA
Found at i:1416221 original size:160 final size:158
Alignment explanation
Indices: 1416029--1416421 Score: 421
Period size: 157 Copynumber: 2.5 Consensus size: 158
1416019 TTCGACTTTA
* * *
1416029 CAAAAATTGGT-GAGAA-AAATGCTTTTCTTGCGAAACCAGAA-CATCAATATCATGTATCCTAA
1 CAAAAA-TGGTGGA-AAGAAATACTTTTCTTGCGACACCAGAAGCATCAATGTCATGTATCCTAA
* * *
1416091 TG-AGAAGACCATGT-TAATGG-TGCCTAATCTTGAAAAAAAAAGGGGATTAGTATGACTATTCC
64 TGAAG-AGA--ATGTGTAATGGTTGCCAAATCTTGAAAAAAAAA-GGGATTAATATGACTATTCA
*
1416153 TGTTTGTTTTATTTAAAACGCAA-ACTTTGATTCTAT
125 TGTTTGTCTTATTTAAAA---AATACTTTGATTCTAT
*
1416189 CAAAAATGGTGGAAAGAAATACTTTTCTTGCGACACCA-AAGCATCAATGTTATGTATCCTAATG
1 CAAAAATGGTGGAAAGAAATACTTTTCTTGCGACACCAGAAGCATCAATGTCATGTATCCTAATG
* ** * ** * * *
1416253 AAGTGAATGTGTTTTGGTTTCCAAATCTTGAAATGAATAGGGATTAATGTGAGTATTCATGTTTG
66 AAGAGAATGTGTAATGGTTGCCAAATCTTGAAAAAAAAAGGGATTAATATGACTATTCATGTTTG
*
1416318 TCTTATTTAAAAAATCCTTTGATTCTAT
131 TCTTATTTAAAAAATACTTTGATTCTAT
* * *
1416346 CAAAAATGGTGGAAAGAAA-AGCTTCTCTTGCGACAGC-GAAGCATCAATGTCATGTATCCAAAT
1 CAAAAATGGTGGAAAGAAATA-CTTTTCTTGCGACACCAGAAGCATCAATGTCATGTATCCTAAT
1416409 GAA-AGGAATGTGT
65 GAAGA-GAATGTGT
1416422 TTTGCCTTCC
Statistics
Matches: 200, Mismatches: 23, Indels: 23
0.81 0.09 0.09
Matches are distributed among these distances:
156 3 0.01
157 79 0.40
158 4 0.02
159 45 0.22
160 67 0.34
161 2 0.01
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (158 bp):
CAAAAATGGTGGAAAGAAATACTTTTCTTGCGACACCAGAAGCATCAATGTCATGTATCCTAATG
AAGAGAATGTGTAATGGTTGCCAAATCTTGAAAAAAAAAGGGATTAATATGACTATTCATGTTTG
TCTTATTTAAAAAATACTTTGATTCTAT
Found at i:1416388 original size:157 final size:157
Alignment explanation
Indices: 1416116--1416447 Score: 436
Period size: 157 Copynumber: 2.1 Consensus size: 157
1416106 AATGGTGCCT
* * * * *
1416116 AATCTTGAAAAAAAAAGGGGATTAGTATGACTATTCCTGTTTGTTTTATTTAAAACGCAAACTTT
1 AATCTTGAAAAGAATA-GGGATTAATATGACTATTCATGTTTGTCTTATTTAAAA--CAAACTTT
* *
1416181 GATTCTATCAAAAATGGTGGAAAGAAATACTTTTCTTGCGACACCAAAGCATCAATGTTATGTAT
63 GATTCTATCAAAAATGGTGGAAAGAAATACTTCTCTTGCGACACCAAAGCATCAATGTCATGTAT
* **
1416246 CCTAATG-AAGTGAATGTGTTTTGGTTTCCA
128 CCAAATGAAAG-GAATGTGTTTTGCCTTCCA
* * * *
1416276 AATCTTGAAATGAATAGGGATTAATGTGAGTATTCATGTTTGTCTTATTTAAAA-AATCCTTTGA
1 AATCTTGAAAAGAATAGGGATTAATATGACTATTCATGTTTGTCTTATTTAAAACAA-ACTTTGA
* *
1416340 TTCTATCAAAAATGGTGGAAAGAAA-AGCTTCTCTTGCGACAGCGAAGCATCAATGTCATGTATC
65 TTCTATCAAAAATGGTGGAAAGAAATA-CTTCTCTTGCGACACCAAAGCATCAATGTCATGTATC
*
1416404 CAAATGAAAGGAATGTGTTTTGCCTTCCC
129 CAAATGAAAGGAATGTGTTTTGCCTTCCA
1416433 AATCTTGAAAAGAAT
1 AATCTTGAAAAGAAT
1416448 GGAGTCTATT
Statistics
Matches: 151, Mismatches: 18, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
156 3 0.02
157 99 0.66
158 3 0.02
159 33 0.22
160 13 0.09
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.34
Consensus pattern (157 bp):
AATCTTGAAAAGAATAGGGATTAATATGACTATTCATGTTTGTCTTATTTAAAACAAACTTTGAT
TCTATCAAAAATGGTGGAAAGAAATACTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCA
AATGAAAGGAATGTGTTTTGCCTTCCA
Found at i:1416482 original size:157 final size:157
Alignment explanation
Indices: 1416177--1416483 Score: 390
Period size: 157 Copynumber: 2.0 Consensus size: 157
1416167 AAAACGCAAA
* *
1416177 CTTTGATTCTATCAAAAATGGTGGAAAGAAATACTTTTCTTGCGACACCAAAGCATCAATGTTAT
1 CTTTGATTCTATCAAAAATGGTGGAAAGAAATACTTCTCTTGCGACACCAAAGCATCAATGTCAT
* ** * * *
1416242 GTATCCTAATGAAGTGAATGTGTTTTGGTTTCCAAATCTTGAAATGAATAGGGATTAATGTGAGT
66 GTATCCAAATGAAGTGAATGTGTTTTGCCTTCCAAATCTTGAAAAGAATAGGGATTAATATAAGT
* * * *
1416307 ATTCATGTTTGTCTTATTTAAAAAATC
131 AATCATGCTTGCCATATTTAAAAAATC
* *
1416334 CTTTGATTCTATCAAAAATGGTGGAAAGAAA-AGCTTCTCTTGCGACAGCGAAGCATCAATGTCA
1 CTTTGATTCTATCAAAAATGGTGGAAAGAAATA-CTTCTCTTGCGACACCAAAGCATCAATGTCA
* *
1416398 TGTATCCAAATGAAAG-GAATGTGTTTTGCCTTCCCAATCTTGAAAAGAAT--GGAGTCTATTAT
65 TGTATCCAAATG-AAGTGAATGTGTTTTGCCTTCCAAATCTTGAAAAGAATAGGGA-T-TAATAT
1416460 AAG-AATCAATGCTTGCCATATTTA
127 AAGTAATC-ATGCTTGCCATATTTA
1416484 GGAGATGAAC
Statistics
Matches: 129, Mismatches: 16, Indels: 10
0.83 0.10 0.06
Matches are distributed among these distances:
155 3 0.02
156 5 0.04
157 118 0.91
158 3 0.02
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.34
Consensus pattern (157 bp):
CTTTGATTCTATCAAAAATGGTGGAAAGAAATACTTCTCTTGCGACACCAAAGCATCAATGTCAT
GTATCCAAATGAAGTGAATGTGTTTTGCCTTCCAAATCTTGAAAAGAATAGGGATTAATATAAGT
AATCATGCTTGCCATATTTAAAAAATC
Found at i:1416546 original size:633 final size:633
Alignment explanation
Indices: 1415649--1417147 Score: 1849
Period size: 633 Copynumber: 2.4 Consensus size: 633
1415639 CCTATTGTTG
* * * * ** *
1415649 AAAAAAT-GGGAATTAGTATGACTATTCTTGTTTGTATTATTTAAGTTACAAACTTTGATTCTAT
1 AAAAAATAGGGAA-TAATATGAGTATTCATGTTTGTCTTATTT-AGAAACAACCTTTGATTCTAT
* * * *
1415713 CAAAAAAGGTGGAAGGAAAGGCTTCTCTTGCGACACCAAAGCATCAATATCATGTATCCTATTGA
64 C-AAAAAGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGA
* * * * * * * * *
1415778 AGGGAATGTGTTTTGGATTCCAAATCTTGGAAATAATGGATATTGTTACGAGAATTGAGGCTTGT
128 AAGGAATGTGTTTTGGCTTCCAAATCTTGAAAAGAATGGAT-CTATTATGAGAA-TCAAGCTTGT
* * * * *
1415843 CTTATTTAAGG-GATGAACTTCGATTTTAAGGAGAATAGGGCAAAGAGAGGATTTTCATGCAAAA
191 CTTATTTAAGGAGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA
* * *
1415907 GAAAATCATCAATATCATTTAT-CTAAATAAGGAGAATGTGTTTATAGTGCCTATTGATAAAATG
256 GAAAATCATCAATATCATTTATCCT-AATAAGGAGAATGTGTTTATAGTGCCTAGTCATAAAATA
* * *
1415971 AGAGAAGATCTACAGTAGAATCCATGTTTATCTTATTTGAGGCAC-AACTTCGA-CTTTACAAAA
320 AGAGAAGATCAACAATAGAATCCATGTTTATCTTATTTGAGGCACGAACTTAGAGCTTTACAAAA
** * *
1416034 ATTGGTGAGAAAAATGCTTTTCTTGCGAAACCAGAACATCAATATCATGTATCCTAATGAGAAGA
385 ATTGGTGAGAAAAATGCCATTCTTGCAAAACCAAAACATCAATATCATGTATCCTAATGAGAAGA
* *
1416099 CCATGTTAATGGTGCCTAATCTTGAAAAAAAAAGGGGATTAGTATGACTATTCCTGTTTGTTTTA
450 CCATATTAATGGTGCCTAATCTTG-AAAAAAAAGGGGATTAGTATGACTATTCCTGTTTGTATTA
** *
1416164 TTTAAAACG-CAAACTTTGATTCT-ATCAAAAATGGTGGAAAGAAATACTTTTCTTGCGACACCA
514 GGTAAAA-GACAAACTTTGATTCTAAT-AAAAACGGTGGAAAGAAATACTTTTCTTGCGACACCA
* * * * * *
1416227 AAGCATCAATGTTATGTATCCTAATGAAGTGAATGTGTTTTGGTTTCCAAATCTTGA
577 AAGCATCAAAGTCATGTACCCTAATAAAGTGAATATGTTTTGGCTTCCAAATCTTGA
** * *
1416284 AATGAATAGGGATTAATGTGAGTATTCATGTTTGTCTTATTTA-AAA-AATCCTTTGATTCTATC
1 AAAAAATAGGGAATAATATGAGTATTCATGTTTGTCTTATTTAGAAACAA-CCTTTGATTCTATC
* * *
1416347 AAAAATGGTGGAAAGAAAAGCTTCTCTTGCGACAGCGAAGCATCAATGTCATGTATCCAAATGAA
65 AAAAA-GGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAA
* * * *
1416412 AGGAATGTGTTTTGCCTTCCCAATCTTGAAAAGAATGGAGTCTATTATAAGAATCAATGCTTGCC
129 AGGAATGTGTTTTGGCTTCCAAATCTTGAAAAGAATGGA-TCTATTATGAGAATCAA-GCTTGTC
* * *
1416477 ATATTT-AGGAGATGAACTTTGATTTTAAGGAAAATAGGGCCACGAAAAGATTTCCATGCAAAAG
192 TTATTTAAGGAGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
*
1416541 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAGTCATAAAATAAG
257 AAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAGTCATAAAATAAG
* * * * * *
1416606 TGAAGATCAATAATAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGAGTTTTATAGAAAT
322 AGAAGATCAACAATAGAATCCATGTTTATCTTATTTGAGGCACGAACTTAGAGCTTTACAAAAAT
* * * * *
1416671 TGGTGGGAAAAATGCCATTCTTGCAAAATCAAAACATCAATATCGTGTATCCTAATGTGGAGACC
387 TGGTGAGAAAAATGCCATTCTTGCAAAACCAAAACATCAATATCATGTATCCTAATGAGAAGACC
* * * * * *
1416736 ATATTTATGGTGTCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCTTTTTTGTATTAGGT
452 ATATTAATGGTGCCTAATCTTGAAAAAAAAGGGGATTAGTATGACTATTCCTGTTTGTATTAGGT
* * * *
1416801 AGAAGACAAACTTTGATTCTAATGAAAACGGTGGAAAGAAATGCTTTTCTTGTGACACCAAAGCA
517 AAAAGACAAACTTTGATTCTAATAAAAACGGTGGAAAGAAATACTTTTCTTGCGACACCAAAGCA
1416866 TCAAAGTCATGTACCCTAATAAAGTGAATATGTTTTGGCTTCCAAATCTTGA
582 TCAAAGTCATGTACCCTAATAAAGTGAATATGTTTTGGCTTCCAAATCTTGA
* * *
1416918 AAAAAATGGGGAATAGTATGGGTATTCATGTTTGTCTTATTTATGAAACAACCTTTGATTCTATC
1 AAAAAATAGGGAATAATATGAGTATTCATGTTTGTCTTATTTA-GAAACAACCTTTGATTCTATC
* *
1416983 AAAAAAGTGGAATA-AAAAGCCTT-TCTTGC-AGCACCAAAGCATCAATGTCTTGTATCCTAAT-
65 AAAAAGGTGGAA-AGAAAAG-CTTCTCTTGCGA-CACCAAAGCATCAATGTCATGTATCCTAATG
** * * * **
1417044 AAAGGGAATGTGTTTTGGCTTCTTATTCTTTAAAAGAATGGAAACTATTATGAGGTTCGAAGCTT
127 AAA-GGAATGTGTTTTGGCTTCCAAATCTTGAAAAGAATGG-ATCTATTATGAGAATC-AAGCTT
* *
1417109 GTCTTATTTAAGGA-ATGAACTTTGATTTTATGAAAAATA
189 GTCTTATTTAAGGAGATGAACTTTGATTTTAAGGAAAATA
1417148 AGGCTATAAG
Statistics
Matches: 736, Mismatches: 107, Indels: 42
0.83 0.12 0.05
Matches are distributed among these distances:
632 12 0.02
633 262 0.36
634 188 0.26
635 235 0.32
636 37 0.05
637 2 0.00
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.33
Consensus pattern (633 bp):
AAAAAATAGGGAATAATATGAGTATTCATGTTTGTCTTATTTAGAAACAACCTTTGATTCTATCA
AAAAGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAG
GAATGTGTTTTGGCTTCCAAATCTTGAAAAGAATGGATCTATTATGAGAATCAAGCTTGTCTTAT
TTAAGGAGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
TCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAGTCATAAAATAAGAGAA
GATCAACAATAGAATCCATGTTTATCTTATTTGAGGCACGAACTTAGAGCTTTACAAAAATTGGT
GAGAAAAATGCCATTCTTGCAAAACCAAAACATCAATATCATGTATCCTAATGAGAAGACCATAT
TAATGGTGCCTAATCTTGAAAAAAAAGGGGATTAGTATGACTATTCCTGTTTGTATTAGGTAAAA
GACAAACTTTGATTCTAATAAAAACGGTGGAAAGAAATACTTTTCTTGCGACACCAAAGCATCAA
AGTCATGTACCCTAATAAAGTGAATATGTTTTGGCTTCCAAATCTTGA
Found at i:1417084 original size:158 final size:159
Alignment explanation
Indices: 1416751--1417084 Score: 388
Period size: 158 Copynumber: 2.1 Consensus size: 159
1416741 TATGGTGTCT
* * *
1416751 AATCTTGAAAAGAATGGGGATTAGTATGACTATTCTTTTTTGTATTAGGTAGAAGACAAACTTTG
1 AATCTTGAAAAGAATGGGGAATAGTATGACTATTCATGTTTGTATTAGGTAGAAGACAAACTTTG
* ** * * *
1416816 ATTCTAATGAAAACGGTGGAAAGAAATGCTTTTCTTGTGACACCAAAGCATCAAAGTCATGTACC
66 ATTCTAATCAAAAAAGTGGAAAGAAAAGCCTTTCTTGAGACACCAAAGCATCAAAGTCATGTACC
*
1416881 CTAATAAAGTGAATATGTTTTGGCTTCCA
131 CTAATAAAGGGAATATGTTTTGGCTTCCA
* ** * ** *
1416910 AATCTTGAAAAAAATGGGGAATAGTATGGGTATTCATGTTTGTCTTATTTATGAA-ACAACCTTT
1 AATCTTGAAAAGAATGGGGAATAGTATGACTATTCATGTTTGTATTAGGTA-GAAGACAAACTTT
* *
1416974 GATTCT-ATCAAAAAAGTGGAATA-AAAAGCCTTTCTTGCAG-CACCAAAGCATCAATGTCTTGT
65 GATTCTAATCAAAAAAGTGGAA-AGAAAAGCCTTTCTTG-AGACACCAAAGCATCAAAGTCATGT
* * **
1417036 ATCCTAATAAAGGGAATGTGTTTTGGCTTCTT
128 ACCCTAATAAAGGGAATATGTTTTGGCTTCCA
* *
1417068 ATTCTTTAAAAGAATGG
1 AATCTTGAAAAGAATGG
1417085 AAACTATTAT
Statistics
Matches: 146, Mismatches: 26, Indels: 7
0.82 0.15 0.04
Matches are distributed among these distances:
158 85 0.58
159 58 0.40
160 3 0.02
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.34
Consensus pattern (159 bp):
AATCTTGAAAAGAATGGGGAATAGTATGACTATTCATGTTTGTATTAGGTAGAAGACAAACTTTG
ATTCTAATCAAAAAAGTGGAAAGAAAAGCCTTTCTTGAGACACCAAAGCATCAAAGTCATGTACC
CTAATAAAGGGAATATGTTTTGGCTTCCA
Found at i:1417132 original size:158 final size:157
Alignment explanation
Indices: 1416856--1417145 Score: 343
Period size: 158 Copynumber: 1.8 Consensus size: 157
1416846 TTTCTTGTGA
*
1416856 CACCAAAGCATCAAAGTCATGTACCCTAATAAAGTGAATATGTTTTGGCTTCCAAATCTTGAAAA
1 CACCAAAGCATCAAAGTCATGTACCCTAATAAAGGGAATATGTTTTGGCTTCCAAATCTTGAAAA
* * * *
1416921 AAATGGGGAATAGTATGGGTATTCATGTTTGTCTTATTTATGAAACAACCTTTGATTCTATCAAA
66 AAATGGGAAATAGTATGGG-ATTCAAGCTTGTCTTATTTAGGAAACAACCTTTGATTCTATCAAA
1416986 AAAGTGGAATAAAAAGCCTTTCTTGCAG
130 AAAGTGGAATAAAAAGCCTTTCTTGCAG
* * * * ** * *
1417014 CACCAAAGCATCAATGTCTTGTATCCTAATAAAGGGAATGTGTTTTGGCTTCTTATTCTTTAAAA
1 CACCAAAGCATCAAAGTCATGTACCCTAATAAAGGGAATATGTTTTGGCTTCCAAATCTTGAAAA
* * ** * *
1417079 GAAT-GGAAACTATTATGAGG-TTCGAAGCTTGTCTTATTTAAGGAATGAA-CTTTGATTTTATG
66 AAATGGGAAA-TAGTATG-GGATTC-AAGCTTGTCTTATTT-AGGAAACAACCTTTGATTCTATC
1417141 AAAAA
127 AAAAA
1417146 TAAGGCTATA
Statistics
Matches: 109, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
157 7 0.06
158 94 0.86
159 8 0.07
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.34
Consensus pattern (157 bp):
CACCAAAGCATCAAAGTCATGTACCCTAATAAAGGGAATATGTTTTGGCTTCCAAATCTTGAAAA
AAATGGGAAATAGTATGGGATTCAAGCTTGTCTTATTTAGGAAACAACCTTTGATTCTATCAAAA
AAGTGGAATAAAAAGCCTTTCTTGCAG
Found at i:1427147 original size:20 final size:20
Alignment explanation
Indices: 1427122--1427159 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
1427112 TTCAATGTTC
1427122 AATGTATCGATAAATGAACA
1 AATGTATCGATAAATGAACA
*
1427142 AATGTATCGATACATGAA
1 AATGTATCGATAAATGAA
1427160 ACTGGCAGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.47, C:0.11, G:0.16, T:0.26
Consensus pattern (20 bp):
AATGTATCGATAAATGAACA
Found at i:1428826 original size:476 final size:473
Alignment explanation
Indices: 1427923--1429189 Score: 1632
Period size: 476 Copynumber: 2.7 Consensus size: 473
1427913 TGAGCTTTTA
* * * * *
1427923 AGGAGAATGTGTTTGTAGTGGCTAACCACAAAATGGATGGAGATCATTACTAGAATCCACATTTG
1 AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACATTTG
* * *
1427988 TCTCATTTGAGGCATGAACTTAGACTTT-CAAAAAATTAGTGGGGTAAAAAGCCTTTCTTGCAAA
66 TCTCATTTGAGGCATGAACTTAGACTTTAC-AAAAATTGGT-GGG-AAAAAGCCTTTCTGGGAAA
* * ** * *
1428052 ACAATAGCATTTATATGATGTATCCTAATGAGAAGACTATGCGTACGATGCCTAATCCAGAAAAG
128 CCAA-AGCATTAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAG
** **
1428117 AACCGGGATTAGAATGAGTATTCATGGCTGTCATATTCAGGAGACAAACTTTGATTCTATCAAAA
192 AA-TAGGATTAGAATGAGTATTCATGTTTGTCATATTCAGGAGACAAACTTTGATTCTATCAAAA
* * * * * *
1428182 ATGGTGGAAACAAATGCTTTTCTTGCGACACCAAAGTATAAATGTCATGCATCCTAACGAAGGGA
256 ATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATAAATGTCATGTATCCTAATGAAGAGA
* * *
1428247 ATGTGTTTTGGTTTCCCAAACTTGAAAAGAATAGAGACTGTTACGAGAATCGTTGCTTATCTTAT
321 ATGTGTTTTGGCTTCCCAAACTTGAAAAGAATAGAGACTGTTACAAGAATCGATGCTTATCTTAT
* * * * *
1428312 TTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGTTTTCCATGTAAAAGAAAAT
386 TTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTCCAAGCAAAAGAAAAT
*
1428377 C-TTCAATATCATTTATCCTATTG
451 CATT-AATATCATTTATCCTAATG
* * * *
1428400 AGGGGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACGAGCATCCACGTTTG
1 AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACATTTG
* * *
1428465 TCTCTTTTGAGGGATGAACTTAGACTTTACAAAAATTGGTGGGAAGAATGCCTTTCGTGGGAAAC
66 TCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAA-AAAGCCTTTC-TGGGAAAC
* * ** **
1428530 CAAGGCATTAATATCG-TTTATCCTAACAAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGA
129 CAAAGCATTAATAT-GATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGA
* * * * * * * *
1428594 ATATGGATTAGTATCACTATTCTTGTTTGTCTTATTTAAGG-TACAAACTTTGATTCTATTAAAA
193 ATA-GGATTAGAATGAGTATTCATGTTTGTCATA-TTCAGGAGACAAACTTTGATTCTATCAAAA
* *
1428658 ATGGTGGAAAGAAAAGCTTTTCTTGC-AGC-CGCAAAGCATGAGTGTCATGTATCCTAATGAAGA
256 ATGGTGGAAAGAAAAGCTTTTCTTGCGA-CAC-CAAAGCATAAATGTCATGTATCCTAATGAAGA
** * * *
1428721 GAATGTGTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGTTTT
319 GAATGTGTTTTGGCTTCCCAAACTTGAAAAGAATAGAGACTGTTACAAGAATCGATGCTTATCTT
* *
1428786 ATTTAAGGGATGAACTTTGATTTTAAGAAAAATGGGGCAAAGAAAAGATTTCCAAGCAAAAGGAA
384 ATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTCCAAGCAAAAGAAA
1428851 ATCATTAATATCATTTATCCTAATG
449 ATCATTAATATCATTTATCCTAATG
* *
1428876 AGGAGAATGTGTTTATAGTGCCTAATCAC-AAATAAATGAAGATCATTACTAGAATCCACATTTA
1 AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACATTTG
* * * *
1428940 TCTCATTCGAGGCATGAGCTTTGACTTTTA-AAAAATTGGTGGGAAAAAGCCTTTCTTGTGAAAC
66 TCTCATTTGAGGCATGAACTTAGAC-TTTACAAAAATTGGTGGGAAAAAGCCTTTC-TGGGAAAC
* *
1429004 TAAAGCATAAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAA
129 CAAAGCATTAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAA
* * *
1429069 TAGAGATTAGAATGAGTATTCATGTTTGTCGTACTCAGGAGACAAACTTTGATTCTATCAAAAAC
194 TAG-GATTAGAATGAGTATTCATGTTTGTCATATTCAGGAGACAAACTTTGATTCTATCAAAAAT
* * * *
1429134 GATGAAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAAT
258 GGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATAAATGTCATGTATCCTAAT
1429190 AAAGGGATAA
Statistics
Matches: 675, Mismatches: 100, Indels: 33
0.84 0.12 0.04
Matches are distributed among these distances:
473 6 0.01
474 166 0.25
475 71 0.11
476 324 0.48
477 107 0.16
478 1 0.00
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31
Consensus pattern (473 bp):
AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACATTTG
TCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGCCTTTCTGGGAAACCA
AAGCATTAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATA
GGATTAGAATGAGTATTCATGTTTGTCATATTCAGGAGACAAACTTTGATTCTATCAAAAATGGT
GGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATAAATGTCATGTATCCTAATGAAGAGAATGTG
TTTTGGCTTCCCAAACTTGAAAAGAATAGAGACTGTTACAAGAATCGATGCTTATCTTATTTAAG
GGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTCCAAGCAAAAGAAAATCATTA
ATATCATTTATCCTAATG
Found at i:1429331 original size:186 final size:186
Alignment explanation
Indices: 1429010--1429374 Score: 597
Period size: 186 Copynumber: 2.0 Consensus size: 186
1429000 AAACTAAAGC
*
1429010 ATAAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATAGAGA
1 ATAAATATGATGTATCCTAATGAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATAGAGA
* * *
1429075 TTAGAATGAGTATTCATGTTTGTCGTACTCAGGAGACAAACTTTGATTCTATCAAAAACGATGAA
66 TTAGAATGAGTATACATGTTTGTCATACTCAGGAGACAAACTTTGATACTATCAAAAACGATGAA
**
1429140 AAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATAAAGGG
131 AAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATAAAGGG
* *
1429196 ATAAATATGATGTATCCTAATGAGAAGACTATGTTTACGGTGCCTAATCTAGAAAAGAACT-GGG
1 ATAAATATGATGTATCCTAATGAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAA-TAGAG
* *
1429260 ATTAGAATGAGTATACATGTTTGTCATACTCAGGAGACAAACTTTGATACTATCAAAAACGGTGG
65 ATTAGAATGAGTATACATGTTTGTCATACTCAGGAGACAAACTTTGATACTATCAAAAACGATGA
* * *
1429325 AAAGAAAAGCTTTTTTTGCAACACTAAAGCATTAATGTCATGTATCCTAA
130 AAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAA
1429375 CGAAAGGAAT
Statistics
Matches: 165, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
186 164 0.99
187 1 0.01
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.29
Consensus pattern (186 bp):
ATAAATATGATGTATCCTAATGAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATAGAGA
TTAGAATGAGTATACATGTTTGTCATACTCAGGAGACAAACTTTGATACTATCAAAAACGATGAA
AAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATAAAGGG
Found at i:1432444 original size:474 final size:470
Alignment explanation
Indices: 1431538--1433116 Score: 2097
Period size: 474 Copynumber: 3.3 Consensus size: 470
1431528 TAAAAAAATA
1431538 GGGATTAGTAAGACTATTCATGTTTGTCTTATTTAAGAAATAAACTTTTATTCTATCAAAAATGG
1 GGGATTAGTAAGACTATTCATGTTTGTCTTATTTAAGAAATAAAC-TTTATTCTATCAAAAATGG
**
1431603 TGGAAAA-AAAAGCTTTTCTTAG-GACGCCAAAGCATTAATGTCATGTCTCCTAATGAAAAGAAT
65 T-GAAAAGAAAAGCTTTTCTT-GCGACGCCAAAGCATTAATGTCATGTCTCCTAATGAAGGGAAT
* *
1431666 GTGTTTTGGCTTCTCTAGCTTGAAAAGATAAAGACTATTACTAGAATCGATGCTTATTTTATTTA
128 GTGTTTTGGCTTC-CTAGCTTGAAAAGATAAA-ACTGTTACGAGAATCGATGCTTATTTTATTTA
** * * *
1431731 AGAAAAGACCTTTGATTTTAAGGAAAATAGGCCAAAGAAAAGATTTCAATGCAAAAAAAATCATC
191 AGGGATGACCTTTGCTTTTAAGGAAAATAGGGCAAAGAAAAGATTTC-ATGCAAAAAAAATCATC
* * * * *
1431796 AATGTCACTTATCCTAATGAGGAAAATGTGTTTACAGTGCTTAATCGCAAAATAAATGAAGATCA
255 AATATAACTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCGCAAAATAAATGAAGATCA
* * * * *
1431861 TTAGTAGCATCCATGTTTGTCTCATTTGAGGCAAGAACATAGACTTTACGAAAATTGGTGGGTAA
320 CTAGTAGAATCCATGTTTGTCTCATTTGAGGTAAGAACTTAGACTTTACAAAAATTGGTGGGTAA
1431926 AAGGCCTTTCTTGCGAAACCAAAGCAGT-AATATGATGTATCCTAATGAGAAGACTATGTTTATG
385 AAGGCCTTTCTTGCGAAACCAAAGCA-TCAATATGATGTATCCTAATGAGAAGACTATGTTTATG
*
1431990 GTGCCTAATCCTGAAAAGAACA
449 GTGCCTAATCCTGAAAAGAACG
* * * * *
1432012 AGGATTAGTATGAGC-ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACG
1 GGGATTAGTAAGA-CTATTCATGTTTGTCTTATTTAAGAAATAAACTTT-ATTCTATCAAAAATG
* *
1432076 GTGAAAAGAAAAGCTTTTCTTGCGATGTCAAAGCATTAATGTCATG-CATCCTAATGAAGGGAAT
64 GTGAAAAGAAAAGCTTTTCTTGCGACGCCAAAGCATTAATGTCATGTC-TCCTAATGAAGGGAAT
* * * *
1432140 GTGTTTTGGCTTCCTAATCTTGAAAAGAATGAAAACTGTTACGAGAATCTATGCTTATCTTATTC
128 GTGTTTTGGCTTCCT-AGCTTGAAAAG-AT-AAAACTGTTACGAGAATCGATGCTTATTTTATTT
*
1432205 AAGGGATGAACTTTGCTTTTAAGGAAAATAGGGCAAAGAAAAGATTTCGATGC-AAAAAAATCAT
190 AAGGGATGACCTTTGCTTTTAAGGAAAATAGGGCAAAGAAAAGATTTC-ATGCAAAAAAAATCAT
* * * *
1432269 CAATATAATTTATCCTGATGAAGAGAATGTGTTTATAGTGCCTAATCACAAAATAAATGAAGATC
254 CAATATAACTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCGCAAAATAAATGAAGATC
* * * * *
1432334 ACTACTGGAATCCACGTTTGTCTCATTTGAGGTAAAAACTTAGACTTTACAAAAATTGGT-GGAA
319 ACTAGTAGAATCCATGTTTGTCTCATTTGAGGTAAGAACTTAGACTTTACAAAAATTGGTGGGTA
* *
1432398 AGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCG-TGAATCCTAATGAGAAGACTATGTTTA
384 A-AAGGCCTTTCTTGCGAAACCAAAGCATCAATAT-GATGTATCCTAATGAGAAGACTATGTTTA
* * * *
1432462 TGGTGCTTTATCCTAAAAAGAATG
447 TGGTGCCTAATCCTGAAAAGAACG
1432486 GGGATTAGTAAGACTATTCATGTTTGTCTTATTTAAGAAATAAACTTCTATTCTATCAAAAATGG
1 GGGATTAGTAAGACTATTCATGTTTGTCTTATTTAAGAAATAAACTT-TATTCTATCAAAAATGG
* * *
1432551 TGGAAAGAAAAGCTTTTCTTGGGACGCCAAAGCATTAATGTCACGTCTCCTAATGAAGGGAATGT
65 TGAAAAGAAAAGCTTTTCTTGCGACGCCAAAGCATTAATGTCATGTCTCCTAATGAAGGGAATGT
* * * *
1432616 GTTTTGGCTTCCTAGCTTGAAAAGATAGAGACTGTTACGAGAATCGATGCATGTTTTATTTAGGG
130 GTTTTGGCTTCCTAGCTTGAAAAGATA-AAACTGTTACGAGAATCGATGCTTATTTTATTTAAGG
*
1432681 GATGACCTTTGACTTTT-AGGAAAATAGGGCAAAAAAAAGATTTTCATGCAAAAGAAAATCATCA
194 GATGACCTTTG-CTTTTAAGGAAAATAGGGCAAAGAAAAGA-TTTCATGCAAAA-AAAATCATCA
* * * *
1432745 ATATGACTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATTGCAAAATGAATGAAGATCAG
256 ATATAACTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCGCAAAATAAATGAAGATCAC
* *
1432810 TAGTAAAATCCATGTTTGTCCTCATTTGA-GTCAGGAACTTAGACTTTACAAAAATTGGTGGGTA
321 TAGTAGAATCCATGTTTGT-CTCATTTGAGGT-AAGAACTTAGACTTTACAAAAATTGGTGGGTA
* * *
1432874 AAAGGCTTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAATGAGACA-ACTATGATTAT
384 AAAGGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGA-AGACTATGTTTAT
* *
1432938 GGTGGCTAATCCTGAAAAAAACG
448 GGTGCCTAATCCTGAAAAGAACG
* * * **
1432961 GGGATTAGTATA-AGTATTCATGTTTGTCTTATCTAAGAGATAAACTTTAATTAAATCAAAAATG
1 GGGATTAGTA-AGACTATTCATGTTTGTCTTATTTAAGAAATAAACTTT-ATTCTATCAAAAATG
* * * *
1433025 GTGGAAAG-AAAGCTTTTCTTTCGACACCAAAGCATCT-ATGTCATGTATCCTAATGAATGGGAA
64 GTGAAAAGAAAAGCTTTTCTTGCGACGCCAAAGCAT-TAATGTCATGTCTCCTAATGAA-GGGAA
* * *
1433088 TGTATTTTGGCTTTCCAATCTTGAAAAGA
127 TGTGTTTTGGC-TTCCTAGCTTGAAAAGA
1433117 ATGGAGATGA
Statistics
Matches: 969, Mismatches: 107, Indels: 56
0.86 0.09 0.05
Matches are distributed among these distances:
471 1 0.00
472 68 0.07
473 40 0.04
474 574 0.59
475 262 0.27
476 24 0.02
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (470 bp):
GGGATTAGTAAGACTATTCATGTTTGTCTTATTTAAGAAATAAACTTTATTCTATCAAAAATGGT
GAAAAGAAAAGCTTTTCTTGCGACGCCAAAGCATTAATGTCATGTCTCCTAATGAAGGGAATGTG
TTTTGGCTTCCTAGCTTGAAAAGATAAAACTGTTACGAGAATCGATGCTTATTTTATTTAAGGGA
TGACCTTTGCTTTTAAGGAAAATAGGGCAAAGAAAAGATTTCATGCAAAAAAAATCATCAATATA
ACTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCGCAAAATAAATGAAGATCACTAGTA
GAATCCATGTTTGTCTCATTTGAGGTAAGAACTTAGACTTTACAAAAATTGGTGGGTAAAAGGCC
TTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
ATCCTGAAAAGAACG
Found at i:1434740 original size:469 final size:468
Alignment explanation
Indices: 1433120--1434904 Score: 1817
Period size: 469 Copynumber: 3.8 Consensus size: 468
1433110 GAAAAGAATG
* * * * * * *
1433120 GAGATGAACTTTGATTTTAAGGAAAATAAGACAAATAAAAGATTTCTAAGCAAATGAAAATCATC
1 GAGATGAACTTTGATTTTAAGGAGAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATC
* * *
1433185 AATATCGTTTATCCTAATGTGGAGAATGTGTTTATAGTGCCTAATAACAAAATGAATGAAGATCA
66 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* * * * * * * * * *
1433250 ATACTAGAATCCTTGTTTATCTCACTTGAGGCAAAAACTTAGA-TTCTCCAAAAAATGGTGGGAA
131 TTAGTAAAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTT-TACAAAAATTGGTGAGAA
* * * * * * *
1433314 AAAAGCCTTTCCTGCGAAACGAAAGCATCAATATGATGTATCCTAATGACAGGACTGTGTTTATG
195 AAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCATAATGAGAAGACTATGTTTATG
* * * * * * *
1433379 GTGCCTAATCTTAAAAAGAATGAGGATTA-T-TTAGTGTTCATGTTTGTTTTATTTAAGAGATAA
260 GTGCCTAATCCTAAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTTATATAAGAGACAA
* * * * *
1433442 ACATTGATTCTATCAAAAACGATGGAAAGAAAAGGTTTTCTTGCGACACCAAAGCATCAATGTCT
325 ACTTTGATTCTATCAAAAACGGTAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCA
* * **
1433507 TGTAACCTAATGAAGGGA--ACGTGTTTTGGCTTCCCAATCTTGAAGAGATTAAAGACTGCTACG
390 TGTAACCTAATGAAGGGACTATGT-TTTTGG-TTCCTAATCTT----A-A--AAAGACTATTACG
1433570 AGAATCGATGCTTGTCTTATTTA
446 AGAATCGATGCTTGTCTTATTTA
* * * *
1433593 -AGGTATGAACTTTAATTTT-------A-A--G----GAAAAGTTTTTCTTGCAAAA-AGAAATC
1 GA-G-ATGAACTTTGATTTTAAGGAGAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA-AAATC
* * * * * *
1433642 ATCAATAGT-ATTTACCCTAATGAGGAGAACGTGTTTACAAT-ACTGATTCACAAAATGAATGAA
63 ATCAATA-TCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT-AATCACAAAATGAATGAA
* * *
1433705 AATCATTA-CAAGAATCCATGTTTGTCTCATTTGAGGCACAAATTTAGACTTTACAAAAATTGGT
126 GATCATTAGTAA-AATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGT
* * *
1433769 GGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTAT-ACTAATGAGAAGACTAAG
190 GAGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCA-TAATGAGAAGACTATG
* * * *
1433833 TTTATGGTGTCTAATCCTGAAAATAATGGGGATTAGTATGACTATTCATGTTTGTCTTATATAAG
254 TTTATGGTGCCTAATCCTAAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTTATATAAG
* * * * * *
1433898 AAACAAACTTTGTTTCTATCAAATATGGTAGAAGGAAAAGCTTTTCTTGCGACTCCAAAGCATCA
319 AGACAAACTTTGATTCTATCAAAAACGGTAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
* * *
1433963 AT-TCATGTACCCTAATGAAGGGACTGTGTTTTTGGTTCCTAATCTTAAAAAGAATAGAGACTGT
384 ATGTCATGTAACCTAATGAAGGGACTATGTTTTTGGTTCCTAATCTTAAAAAGACT----A-T-T
**
1434027 CACGAGAATTTATGCTTGTCTTATTTA
443 -ACGAGAATCGATGCTTGTCTTATTTA
* * * * **
1434054 AAGGATGAACTTTGGTTTTAAAGAGAATAGGGCAAAGAAAAGATTTCCGTGCAATTGAAAATCAT
1 GA-GATGAACTTTGATTTTAAGGAGAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAT
* * ** * *
1434119 CAGTATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCGTAAAATAAATAAAGATC
65 CAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATC
* * ** * * * * *
1434184 ACTAGTAGAATCTGTGTTTGTCTTATTTGAGGGACGAACTTAAACTTCACAAAAATTGGTGAGAA
130 ATTAGTAAAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGAGAA
* * * * ** *
1434249 GAAAGCCTTTGTTGCGAAACCAAAGCTTCAATATCG-TGTATCATAATGAGATTACTATGTTCAT
195 AAAAGCCTTTCTTGCAAAACCAAAGCATCAATAT-GATGTATCATAATGAGAAGACTATGTTTAT
* * * * *
1434313 GGTGCCTAGTCTTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTGTTATATAAGAGACA
259 GGTGCCTAATCCTAAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTTATATAAGAGACA
* * * *
1434378 AACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGGCACAAAAGCATCAATGTC
324 AACTTTGATTCTATCAAAAACGGTAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
** * * *
1434443 ATGTGTCCTAATGAATGGACTATGTTTTTAGTTCCTAATCTTAAAAAGACTATTATGAGAATCGA
389 ATGTAACCTAATGAAGGGACTATGTTTTTGGTTCCTAATCTTAAAAAGACTATTACGAGAATCGA
*
1434508 TGCTTATCTTATTTA
454 TGCTTGTCTTATTTA
* *
1434523 TGAGATGAAATTTGATTTTAAGGAGAATAGGGCAAAGAAAAGATTTCCATGCAAAACAAAATCAT
1 -GAGATGAACTTTGATTTTAAGGAGAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAT
* * *
1434588 CAATATCACTTATCCTAATGAGGAGAATGTGTTTATAGTGGCTAATCACAAAATCAATGAAGATC
65 CAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATC
* * * *
1434653 ATTAGTAAAATCCATGTTTGTCTC-TTTTATTGCACGAACTTAGACTTTACGAAAATTGGTGAGA
130 ATTAGTAAAATCCATGTTTGTCTCATTTGA-GGCACAAACTTAGACTTTACAAAAATTGGTGAGA
* * * * *
1434717 AAAAAACCTCTCTTGCAAAACCAAAGTATCAATATGATGTATCCTAATAAGAAGACTATGTTTAT
194 AAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCATAATGAGAAGACTATGTTTAT
* ** * * * * * *
1434782 GCTGCCTAATCCTAAAAAGAAAAAGGATTAGTATGAGTATTCATGCTTATCTTATTTAAAAGATA
259 GGTGCCTAATCCTAAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTTATATAAGAGACA
* * ** *
1434847 AACTATGATTCAATCAAAAATAGTAGAAAGAAAAGCTTTTCTTGTGACACCAAAGCAT
324 AACTTTGATTCTATCAAAAACGGTAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
1434905 TAGTGTGATG
Statistics
Matches: 1075, Mismatches: 193, Indels: 92
0.79 0.14 0.07
Matches are distributed among these distances:
454 6 0.01
456 1 0.00
457 1 0.00
459 4 0.00
460 200 0.19
461 70 0.07
462 87 0.08
463 2 0.00
466 1 0.00
467 1 0.00
468 6 0.01
469 336 0.31
470 2 0.00
471 2 0.00
472 2 0.00
473 1 0.00
474 15 0.01
475 285 0.27
476 53 0.05
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.32
Consensus pattern (468 bp):
GAGATGAACTTTGATTTTAAGGAGAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATC
AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
TTAGTAAAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGAGAAA
AAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCATAATGAGAAGACTATGTTTATGG
TGCCTAATCCTAAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTTATATAAGAGACAAA
CTTTGATTCTATCAAAAACGGTAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAT
GTAACCTAATGAAGGGACTATGTTTTTGGTTCCTAATCTTAAAAAGACTATTACGAGAATCGATG
CTTGTCTTATTTA
Found at i:1435115 original size:19 final size:21
Alignment explanation
Indices: 1435078--1435121 Score: 65
Period size: 19 Copynumber: 2.1 Consensus size: 21
1435068 GTTAAGTATA
1435078 AATGTTTTTCAAGCATAAAAAT
1 AATGTTTTTCAAG-ATAAAAAT
1435100 AATG-TTTTCAAG-TAAAAAT
1 AATGTTTTTCAAGATAAAAAT
1435119 AAT
1 AAT
1435122 CCAAAGTATC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 10 0.45
21 8 0.36
22 4 0.18
ACGTcount: A:0.48, C:0.07, G:0.09, T:0.36
Consensus pattern (21 bp):
AATGTTTTTCAAGATAAAAAT
Found at i:1435389 original size:33 final size:33
Alignment explanation
Indices: 1435347--1435487 Score: 282
Period size: 33 Copynumber: 4.3 Consensus size: 33
1435337 ATAGTGTGTC
1435347 GATACATTATATCGATACATGGTCAAATGTATT
1 GATACATTATATCGATACATGGTCAAATGTATT
1435380 GATACATTATATCGATACATGGTCAAATGTATT
1 GATACATTATATCGATACATGGTCAAATGTATT
1435413 GATACATTATATCGATACATGGTCAAATGTATT
1 GATACATTATATCGATACATGGTCAAATGTATT
1435446 GATACATTATATCGATACATGGTCAAATGTATT
1 GATACATTATATCGATACATGGTCAAATGTATT
1435479 GATACATTA
1 GATACATTA
1435488 AGCCCAACTC
Statistics
Matches: 108, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 108 1.00
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.36
Consensus pattern (33 bp):
GATACATTATATCGATACATGGTCAAATGTATT
Found at i:1439846 original size:19 final size:20
Alignment explanation
Indices: 1439802--1439847 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
1439792 ACACCCAAAT
*
1439802 GTATCGATACATATTACTTA
1 GTATCGATACATACTACTTA
* *
1439822 GTATCGATACATGCT-CTTG
1 GTATCGATACATACTACTTA
1439841 GTATCGA
1 GTATCGA
1439848 AACACAGTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 10 0.43
20 13 0.57
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.37
Consensus pattern (20 bp):
GTATCGATACATACTACTTA
Found at i:1441675 original size:476 final size:475
Alignment explanation
Indices: 1440672--1443083 Score: 2882
Period size: 476 Copynumber: 5.1 Consensus size: 475
1440662 AGGGAATGTG
* * ** ** * *
1440672 TTTTGGTTTCCCAATCTTG-AAA-AATGTAGACTGTTACAAGAATTGATGCTTATCTTATTTAAA
1 TTTTGG-TTCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCAATGCTTGTCTTATTTAAG
* * * * *
1440735 GGATGAACATTCATTTTAAGCAAAATAGGGCAAA-AAAAGGATTTCGAAGCAAAAGCAAGTCATC
65 GGATGAACATTCATTTTAAGCAAAATAGGGCAAAGAAAA-GATTTCTATGCAAAAGAAAATCATT
* * * * *
1440799 AAAATCACTTATCCAAATGAGGAAAATGTGTTTATGGTGCTTAATCACAAAATGAATTAACATCA
129 AAAATCACTTATCCAAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCA
* * *
1440864 TTAGTAGAATCCATGTTTGTCTCATTTAAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAA
194 TTAGTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAA
* *
1440929 AAAGCCTTTCTTGAAAAACCAAAGCATCAATATGATGTATCCTATTGAGAAGACTATGTTTATGG
259 AAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGG
* ** * *
1440994 TGCCTAATCTTGAAAGGAATAGGGATTAGTATGAGTATTAATGTTTGTCTTATTTAAAAGACAAA
324 TGCCTAATCCTGAAAAAAATGGGGATTAGTATGACTATTAATGTTTGTCTTATTTAAAAGACAAA
* * **
1441059 TTTTGATTTCATTAAAAATGAAGGAAAGAAAAGCTTTTCTTGCGATAGAAAAGCATTAATGTCAT
389 TTTTGATTT-ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGATAGAAAAGCATTAATGTCAT
* *
1441124 GTATTCTAATGAAAGGAATGCAT
453 GTATCCTAATGAAGGGAATGCAT
** * * *
1441147 TTTCAGTTCCAAATCTTGAAAAGAATGGAGACTT-TTACGAGAATAAATGCTTGTCTTATTTAAG
1 TTTTGGTTCCCAATCTTGAAAAGAATGGAGA-TTGTTATGAGAATCAATGCTTGTCTTATTTAAG
*
1441211 GGATGAACATTTATTTTAAGCAAAATAGGGCAAAGAAAAGATTTCTATGCAAAAGAAAATCATTA
65 GGATGAACATTCATTTTAAGCAAAATAGGGCAAAGAAAAGATTTCTATGCAAAAGAAAATCATTA
* * * * *
1441276 ATATCACTTATCCTAATAAAGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATAAAGATCAT
130 AAATCACTTATCCAAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCAT
* * * * * * * * *
1441341 CAATAGAATCCAAGCTTATCTCATTTGAGGCATGAACTTACAGTTTACAAAAATTGGTGAGAAGA
195 TAGTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAA
* * * * *
1441406 AAGCCTTTCTTGCAAAACCAAATCTTCAATATCATGTATCCTAATGAGATGACTATGTTCATGGT
260 AAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGT
* * * * * * * * *
1441471 GCCTAGTCTTGAAAAAAATGGGGATTATTATGACTATTCATGTTTGTCTTATATGAGAGATAAAC
325 GCCTAATCCTGAAAAAAATGGGGATTAGTATGACTATTAATGTTTGTCTTATTTAAAAGACAAAT
* ** * * * *
1441536 TTTGATTCTATCAAAAACGGTGGAAAGAAGATTTTTTCTTGCGACATAAAAGCATCAATATCATG
390 TTTGATT-TATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGATAGAAAAGCATTAATGTCATG
* * **
1441601 TATCATAATGAAGGGACTGTGT
454 TATCCTAATGAAGGGAATGCAT
** * * * ** * *
1441623 TTTTTATTCCCAATCTTTAAAAAAATAGAGATTGTTATGAGAATTGATGCTTGTCTTATTTGAGA
1 TTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCAATGCTTGTCTTATTTAAGG
* * *
1441688 GATGAACATTCATTTTAAGCAAAATAGGGCAAAGAAAAGATGTCAATGCAAGAA-AAAATCATCA
66 GATGAACATTCATTTTAAGCAAAATAGGGCAAAGAAAAGATTTCTATGCAA-AAGAAAATCATTA
* * *
1441752 AAATCACTTATCCAAATGAGGAGAATGTGTTTATAGTGCCTAAGCACAAAATGAATGCAA-ATTA
130 AAATCACTTATCCAAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT-AAAGATCA
* * * * * *
1441816 TTAGTAGAATCCATGTTTGTCTTATTTAAGGCACGGATTTGGACTTTACAAAAATTGGTGGGAAA
194 TTAGTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAA
* * *
1441881 AAAGCTTTTGTTGCAAAACCAAAGCATCAATATGATATATCCTAATGAGAAGACTATGTTTATGG
259 AAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGG
* * * *
1441946 TGCCTAATCCTGAAAAGAATGGGGATTAATATAAGTATTAATGTTTGTCTTATTTAAAAGACAAA
324 TGCCTAATCCTGAAAAAAATGGGGATTAGTATGACTATTAATGTTTGTCTTATTTAAAAGACAAA
* ** * *
1442011 CTTTGATTTTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGATAGCTAAGCATTGAGGTCAT
389 TTTTGA-TTTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGATAGAAAAGCATTAATGTCAT
* *
1442076 GTGTCCTAATGAAGAGAATGCAT
453 GTATCCTAATGAAGGGAATGCAT
*
1442099 TTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCAATG-TTAGTCTTATTTAAG
1 TTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCAATGCTT-GTCTTATTTAAG
* * * * * * * * **
1442163 GTAAGAACTTTGATTTAAAGGAAAATAGGGCAAAAAAAAGATTTCTTTGTGAAAGAAAATCA-T-
65 GGATGAACATTCATTTTAAGCAAAATAGGGCAAAGAAAAGATTTCTATGCAAAAGAAAATCATTA
* * * * * * * *
1442226 CAATCATTTATCCAAATGAGGAAAATGTATTCATAGTGCCTAATCATAAAATGAATGAAGATCTT
130 AAATCACTTATCCAAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCAT
* * *
1442291 TACTAGAATCCATA-TTTGTCTCATTTGAGGTAC-ACACTTAGACTTTACAAAAATTAGT-GGAA
195 TAGTAGAATCCA-AGTTTGTCTCATTTGAGGCACGA-ACTTAGACTTTACAAAAATTGGTGGGAA
* * *
1442353 AAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCATATTGAGAAGACTATGTTTGTG
258 AAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATG
* * * * *
1442418 TTGCCTAATCCT-CAAAAAATGGGGATTAGTATGATTATTAATGTTTAG-GTTATTTAAAAGATA
323 GTGCCTAATCCTGAAAAAAATGGGGATTAGTATGACTATTAATGTTT-GTCTTATTTAAAAGACA
* * *
1442481 AATTTTGATTTCATCAAAAATGATGGAAATAAAAGCTTTTCTTGCGATAGAAAAGCATTAATGTC
387 AATTTTGATTT-ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGATAGAAAAGCATTAATGTC
* *
1442546 ATGTATCCTAATGAAAGCAATGCAT
451 ATGTATCCTAATGAAGGGAATGCAT
*
1442571 TTTTGGTTCCCAATCTTGAAAAGAATGGAGACTT-TTATGAGAATCAATGCTTATCTTATTTAAG
1 TTTTGGTTCCCAATCTTGAAAAGAATGGAGA-TTGTTATGAGAATCAATGCTTGTCTTATTTAAG
*
1442635 GGATGAAC-TTCCATTTTAAGCAAAATAGGGCAAAGAAGAGATTTCTATGCAAAAGAAAATCATT
65 GGATGAACATT-CATTTTAAGCAAAATAGGGCAAAGAAAAGATTTCTATGCAAAAGAAAATCATT
* * * * * * * *
1442699 AATATCTCATATTCTAGTAAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATAAAGATCA
129 AAAATCACTTATCCAAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCA
* * * * * *
1442764 TTGGTAGAATCCAAGCTTGTCTCATTTGAGGCATGAACTTATATTTTACAAAAATTGGTGGGAAG
194 TTAGTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAA
* * *
1442829 AAAGCCTTTCTTGCAAAACCAAAGCTTCAATATTG-TGTATCCTAATGAGATGACTATGTTCATG
259 AAAGCCTTTCTTGCAAAACCAAAGCATCAATA-TGATGTATCCTAATGAGAAGACTATGTTTATG
* ** *
1442893 GTGCCTAGTCCTGAAAAAAATGGGGATTAGTATGACTACTT-ATGTTTGTCTTACATAAGAGACA
323 GTGCCTAATCCTGAAAAAAATGGGGATTAGTATGACTA-TTAATGTTTGTCTTATTTAAAAGACA
* * * ** *
1442957 AATTTTGATTTTATCAAAAACGGTGGAAAGAAAATCTTTTCTTGCGACACAAAAGCATCGATATC
387 AATTTTGA-TTTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGATAGAAAAGCATTAATGTC
* **
1443022 ATGTATCTTAATGAA-GGAACTGTGT
451 ATGTATCCTAATGAAGGGAA-TGCAT
*
1443047 TTTTGGTTCCCAATCTTGAAAAGAATAGAGATTGTTA
1 TTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTA
1443084 CTGTAGACAC
Statistics
Matches: 1623, Mismatches: 283, Indels: 61
0.83 0.14 0.03
Matches are distributed among these distances:
471 5 0.00
472 222 0.14
473 82 0.05
474 205 0.13
475 89 0.05
476 1003 0.62
477 17 0.01
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.32
Consensus pattern (475 bp):
TTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCAATGCTTGTCTTATTTAAGG
GATGAACATTCATTTTAAGCAAAATAGGGCAAAGAAAAGATTTCTATGCAAAAGAAAATCATTAA
AATCACTTATCCAAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCATT
AGTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAA
AGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTG
CCTAATCCTGAAAAAAATGGGGATTAGTATGACTATTAATGTTTGTCTTATTTAAAAGACAAATT
TTGATTTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGATAGAAAAGCATTAATGTCATGTA
TCCTAATGAAGGGAATGCAT
Found at i:1443447 original size:32 final size:32
Alignment explanation
Indices: 1443406--1443468 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
1443396 ATCGATACAT
*
1443406 TACATAAGTGTTGTATCGATATAATGTATCGA
1 TACATAAGTGTTGTATCGATACAATGTATCGA
1443438 TACATAAGTGTTGTATCGATACAATGTATCG
1 TACATAAGTGTTGTATCGATACAATGTATCG
1443469 CTACGAAGCT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (32 bp):
TACATAAGTGTTGTATCGATACAATGTATCGA
Found at i:1443454 original size:19 final size:19
Alignment explanation
Indices: 1443373--1443460 Score: 71
Period size: 19 Copynumber: 4.7 Consensus size: 19
1443363 TTTCAATGAT
* *
1443373 TTGTATCGATACAAAAATG
1 TTGTATCGATACATAAGTG
1443392 TTGTATCGATACATTACATAAGTG
1 TTGTATCG----A-TACATAAGTG
1443416 TTGTATCGAT--ATAA---
1 TTGTATCGATACATAAGTG
1443430 -TGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
1443448 TTGTATCGATACA
1 TTGTATCGATACA
1443461 ATGTATCGCT
Statistics
Matches: 56, Mismatches: 2, Indels: 22
0.70 0.03 0.28
Matches are distributed among these distances:
13 9 0.16
15 4 0.07
17 4 0.07
19 21 0.38
20 1 0.02
23 1 0.02
24 16 0.29
ACGTcount: A:0.35, C:0.11, G:0.17, T:0.36
Consensus pattern (19 bp):
TTGTATCGATACATAAGTG
Found at i:1443542 original size:12 final size:12
Alignment explanation
Indices: 1443491--1443536 Score: 53
Period size: 12 Copynumber: 4.1 Consensus size: 12
1443481 TGCCAAGAAA
1443491 ATGTATCGATAC
1 ATGTATCGATAC
* *
1443503 AT-TACCCA-A-
1 ATGTATCGATAC
1443512 ATGTATCGATAC
1 ATGTATCGATAC
1443524 ATGTATCGATAC
1 ATGTATCGATAC
1443536 A
1 A
1443537 CTTATCTTTG
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
9 2 0.07
10 5 0.19
11 5 0.19
12 15 0.56
ACGTcount: A:0.37, C:0.20, G:0.13, T:0.30
Consensus pattern (12 bp):
ATGTATCGATAC
Found at i:1443588 original size:52 final size:53
Alignment explanation
Indices: 1443524--1443673 Score: 216
Period size: 52 Copynumber: 2.9 Consensus size: 53
1443514 GTATCGATAC
*** *
1443524 ATGTATCGATACACTTAT-CTTTGTATCGATACATGCAGGAAAATTTGCCCAG
1 ATGTATCGATACACTTATAAAATGTATCGATACATGCAGGCAAATTTGCCCAG
*
1443576 ATGTATCGATACAC-TATAAAATGTATCGATACATACAGGCAAATTTGCCCAG
1 ATGTATCGATACACTTATAAAATGTATCGATACATGCAGGCAAATTTGCCCAG
* *
1443628 ATGTATCGATACA-TTATGAAATGTATCGATACATGCACGCAAATTT
1 ATGTATCGATACACTTATAAAATGTATCGATACATGCAGGCAAATTT
1443674 TCATATTTCG
Statistics
Matches: 88, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
51 3 0.03
52 85 0.97
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (53 bp):
ATGTATCGATACACTTATAAAATGTATCGATACATGCAGGCAAATTTGCCCAG
Found at i:1457484 original size:42 final size:39
Alignment explanation
Indices: 1457438--1457542 Score: 99
Period size: 39 Copynumber: 2.7 Consensus size: 39
1457428 GGCGTCCTCC
* *
1457438 ACAAAAAAAAAAACCAAATAAACAAAAGAAAAGAAGAAAAAA
1 ACAAAAAAAAAAA-CAAA-AAACAAAA-AAAAAAACAAAAAA
*
1457480 AC-AAACAAAAAACAAAAAACAAAAAAAAAAACAAAGAAA
1 ACAAAAAAAAAAACAAAAAACAAAAAAAAAAACAAA-AAA
* * *
1457519 A-AAAAACAATAAC-AACAACAAAAA
1 ACAAAAAAAAAAACAAAAAACAAAAA
1457543 GGGTCCAGAT
Statistics
Matches: 54, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
38 19 0.35
39 20 0.37
40 4 0.07
41 9 0.17
42 2 0.04
ACGTcount: A:0.82, C:0.12, G:0.04, T:0.02
Consensus pattern (39 bp):
ACAAAAAAAAAAACAAAAAACAAAAAAAAAAACAAAAAA
Found at i:1457491 original size:12 final size:11
Alignment explanation
Indices: 1457438--1457542 Score: 65
Period size: 11 Copynumber: 9.6 Consensus size: 11
1457428 GGCGTCCTCC
1457438 ACAAAAAAAAA
1 ACAAAAAAAAA
** *
1457449 A-ACCAAATAA
1 ACAAAAAAAAA
*
1457459 AC-AAAAGAAA
1 ACAAAAAAAAA
* *
1457469 AGAAGAAAAAA
1 ACAAAAAAAAA
*
1457480 ACAAACAAAAA
1 ACAAAAAAAAA
1457491 ACAAAAAACAAA
1 ACAAAAAA-AAA
1457503 A-AAAAAAACAA
1 ACAAAAAAA-AA
*
1457514 A-GAAAAAAAA
1 ACAAAAAAAAA
* *
1457524 ACAATAACAACA
1 ACAA-AAAAAAA
1457536 ACAAAAA
1 ACAAAAA
1457543 GGGTCCAGAT
Statistics
Matches: 69, Mismatches: 19, Indels: 12
0.69 0.19 0.12
Matches are distributed among these distances:
10 16 0.23
11 40 0.58
12 13 0.19
ACGTcount: A:0.82, C:0.12, G:0.04, T:0.02
Consensus pattern (11 bp):
ACAAAAAAAAA
Found at i:1457508 original size:30 final size:31
Alignment explanation
Indices: 1457440--1457521 Score: 98
Period size: 30 Copynumber: 2.6 Consensus size: 31
1457430 CGTCCTCCAC
*
1457440 AAAAAAAAA-AACCAAATAAACAAAAGAAAAG
1 AAAAAAAAACAAACAAA-AAACAAAAGAAAAG
1457471 AAGAAAAAAACAAACAAAAAACAAAA-AACAA-
1 AA-AAAAAAACAAACAAAAAACAAAAGAA-AAG
*
1457502 AAAAAAAAACAAAGAAAAAA
1 AAAAAAAAACAAACAAAAAA
1457522 AAACAATAAC
Statistics
Matches: 46, Mismatches: 2, Indels: 7
0.84 0.04 0.13
Matches are distributed among these distances:
30 17 0.37
31 6 0.13
32 17 0.37
33 6 0.13
ACGTcount: A:0.84, C:0.10, G:0.05, T:0.01
Consensus pattern (31 bp):
AAAAAAAAACAAACAAAAAACAAAAGAAAAG
Found at i:1457525 original size:26 final size:25
Alignment explanation
Indices: 1457440--1457542 Score: 91
Period size: 26 Copynumber: 4.1 Consensus size: 25
1457430 CGTCCTCCAC
** *
1457440 AAAAAAAAA-AACCAAATAAACAAA
1 AAAAAAAAACAAAAAAAAAAACAAA
* * * *
1457464 AGAAAAGAAGAAAAAAACAAACAAA
1 AAAAAAAAACAAAAAAAAAAACAAA
1457489 AAACAAAAAACAAAAAAAAAAACAAA
1 AAA-AAAAAACAAAAAAAAAAACAAA
* * *
1457515 GAAAAAAAAACAATAACAACAACAAA
1 -AAAAAAAAACAAAAAAAAAAACAAA
1457541 AA
1 AA
1457543 GGGTCCAGAT
Statistics
Matches: 64, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
24 7 0.11
25 16 0.25
26 38 0.59
27 3 0.05
ACGTcount: A:0.83, C:0.12, G:0.04, T:0.02
Consensus pattern (25 bp):
AAAAAAAAACAAAAAAAAAAACAAA
Found at i:1457533 original size:46 final size:47
Alignment explanation
Indices: 1457438--1457527 Score: 127
Period size: 44 Copynumber: 2.0 Consensus size: 47
1457428 GGCGTCCTCC
*
1457438 ACAAAAAA-AAAAACCAAATAAACAAAAGAAAAGAAGAAAAAAACAA
1 ACAAAAAACAAAAAACAAATAAACAAAAGAAAAGAAGAAAAAAACAA
1457484 ACAAAAAACAAAAAACAAA-AAA-AAAA-ACAAAGAA-AAAAAAACAA
1 ACAAAAAACAAAAAACAAATAAACAAAAGA-AAAGAAGAAAAAAACAA
1457528 TAACAACAAC
Statistics
Matches: 41, Mismatches: 1, Indels: 6
0.85 0.02 0.12
Matches are distributed among these distances:
44 11 0.27
45 10 0.24
46 11 0.27
47 9 0.22
ACGTcount: A:0.83, C:0.11, G:0.04, T:0.01
Consensus pattern (47 bp):
ACAAAAAACAAAAAACAAATAAACAAAAGAAAAGAAGAAAAAAACAA
Found at i:1457542 original size:1 final size:1
Alignment explanation
Indices: 1457440--1457524 Score: 53
Period size: 1 Copynumber: 85.0 Consensus size: 1
1457430 CGTCCTCCAC
** * * * * * * * * *
1457440 AAAAAAAAAAACCAAATAAACAAAAGAAAAGAAGAAAAAAACAAACAAAAAACAAAAAACAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
1457505 AAAAAACAAAGAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAA
1457525 CAATAACAAC
Statistics
Matches: 60, Mismatches: 24, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
1 60 1.00
ACGTcount: A:0.85, C:0.09, G:0.05, T:0.01
Consensus pattern (1 bp):
A
Found at i:1459182 original size:34 final size:34
Alignment explanation
Indices: 1459044--1459205 Score: 147
Period size: 33 Copynumber: 4.8 Consensus size: 34
1459034 AAACCTTCAA
*
1459044 AAGCCCACAAGT-TCGTGGCA-TCTTTTTCCTTTT
1 AAGCCCACAACTCT-GTGGCACTCTTTTTCCTTTT
* ** *
1459077 AAGCCCATAACTCCATGGCAC-C-TTTTCTTTTTT
1 AAGCCCACAACTCTGTGGCACTCTTTTTC-CTTTT
* *
1459110 AAGTCCACAACTCTGTGGCACTCATTTTT-TTTTGT
1 AAGCCCACAACTCTGTGGCACTC-TTTTTCCTTT-T
1459145 AAGCCCACAACTCTGTGGCACTCTTTTTCCTTTT
1 AAGCCCACAACTCTGTGGCACTCTTTTTCCTTTT
* * *
1459179 AAGCCTACAAGT-TAGTGGCACCCTTTT
1 AAGCCCACAACTCT-GTGGCACTCTTTT
1459206 CAAAAGTGCA
Statistics
Matches: 106, Mismatches: 14, Indels: 17
0.77 0.10 0.12
Matches are distributed among these distances:
32 5 0.05
33 38 0.36
34 33 0.31
35 26 0.25
36 4 0.04
ACGTcount: A:0.20, C:0.28, G:0.14, T:0.38
Consensus pattern (34 bp):
AAGCCCACAACTCTGTGGCACTCTTTTTCCTTTT
Found at i:1459522 original size:48 final size:49
Alignment explanation
Indices: 1459457--1459754 Score: 201
Period size: 52 Copynumber: 6.0 Consensus size: 49
1459447 CCTTTTTCTT
* *
1459457 ATCTTTAA-ACCCAATGTCGCTGGCCTTGAATCAGCATATTGGTGCCTTT
1 ATCTTTAAGA-CCAATGTCGCTGGCCTTGAATCAGCATATTGGCGCCTTC
* * * *
1459506 GTC-TT-AGTACCAATGTCGCTGGCCTTGAATCAGCACATTAGCACCTTC
1 ATCTTTAAG-ACCAATGTCGCTGGCCTTGAATCAGCATATTGGCGCCTTC
*
1459554 ATCTTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTC
1 ATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCGCC-T--TC
* * * * ** * * *
1459606 ATCTTTAAAACCCAATGTTGATTGGCATTGTCTCAACACATT-G-GCATTC
1 ATCTTTAAGA-CCAATGTCG-CTGGCCTTGAATCAGCATATTGGCGCCTTC
* * * * * * * * *
1459655 TTCTTCAAGTCTAATGTCGCTGGCCATGAATCAGCACATTGTCATTCTTCTC
1 ATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGC--GCCT-TC
* * * * *
1459707 ATCTTTAAGCCCAATATCACTGGTCTTGAATCAGCATATTGGCACCTT
1 ATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCGCCTT
1459755 TATCACTCTT
Statistics
Matches: 187, Mismatches: 48, Indels: 28
0.71 0.18 0.11
Matches are distributed among these distances:
47 16 0.09
48 45 0.24
49 47 0.25
50 5 0.03
51 3 0.02
52 48 0.26
53 8 0.04
54 15 0.08
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.33
Consensus pattern (49 bp):
ATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCGCCTTC
Found at i:1460382 original size:13 final size:13
Alignment explanation
Indices: 1460364--1460420 Score: 51
Period size: 13 Copynumber: 3.9 Consensus size: 13
1460354 ACAAAAATGT
1460364 TGTATCGATACAA
1 TGTATCGATACAA
*
1460377 TGTATCAATACATAA
1 TGTATCGATAC--AA
1460392 GTGTTGTATCGATACAA
1 ----TGTATCGATACAA
1460409 TGTATCGATACA
1 TGTATCGATACA
1460421 TAAGTGTTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
13 22 0.61
15 2 0.06
17 2 0.06
19 10 0.28
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1460397 original size:32 final size:32
Alignment explanation
Indices: 1460352--1460442 Score: 128
Period size: 32 Copynumber: 2.8 Consensus size: 32
1460342 ATTTGTACCG
* *
1460352 ATACAAAAATGTTGTATCGATACAATGTATCA
1 ATACATAAGTGTTGTATCGATACAATGTATCA
*
1460384 ATACATAAGTGTTGTATCGATACAATGTATCG
1 ATACATAAGTGTTGTATCGATACAATGTATCA
1460416 ATACATAAGTGTTATTGTATCGATACA
1 ATACATAAGTG---TTGTATCGATACA
1460443 TAAGTTTGTA
Statistics
Matches: 53, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
32 40 0.75
35 13 0.25
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.34
Consensus pattern (32 bp):
ATACATAAGTGTTGTATCGATACAATGTATCA
Found at i:1460637 original size:52 final size:52
Alignment explanation
Indices: 1460546--1460673 Score: 195
Period size: 52 Copynumber: 2.5 Consensus size: 52
1460536 CACTAATCTT
* *
1460546 TGTATCGATACATGTA-GAAAATTTGCCCAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
* * *
1460597 TGTATCGATACATACAGGCAAATTTGCCCAGATGTATCGATACATTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
1460649 TGTTTCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
1460674 TCATATTTCG
Statistics
Matches: 69, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
51 14 0.20
52 55 0.80
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.30
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:1466231 original size:42 final size:42
Alignment explanation
Indices: 1466170--1466284 Score: 187
Period size: 42 Copynumber: 2.7 Consensus size: 42
1466160 TAGCCCTCAA
*
1466170 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
1466212 AGAGATAGAAGAGATAGGAGGGATGATAAGAGGAGAGACAGG
1 AGAGATAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1466254 AGAGATA-ATAGAGAGAGGAGGGATGATAGGA
1 AGAGATAGA-AGAGAGAGGAGGGATGATAGGA
1466285 AGAGGAGAGA
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
41 1 0.01
42 66 0.99
ACGTcount: A:0.45, C:0.02, G:0.44, T:0.09
Consensus pattern (42 bp):
AGAGATAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:1466272 original size:18 final size:18
Alignment explanation
Indices: 1466245--1466294 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
1466235 TGATAAGAGG
*
1466245 AGAGACAGGAGAGATAAT
1 AGAGAGAGGAGAGATAAT
* *
1466263 AGAGAGAGGAGGGATGAT
1 AGAGAGAGGAGAGATAAT
1466281 AG-GAAGAGGAGAGA
1 AGAG-AGAGGAGAGA
1466295 AGAAGATGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
17 1 0.04
18 26 0.96
ACGTcount: A:0.46, C:0.02, G:0.44, T:0.08
Consensus pattern (18 bp):
AGAGAGAGGAGAGATAAT
Found at i:1472268 original size:42 final size:42
Alignment explanation
Indices: 1472213--1472331 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
1472203 TTCTTCTCTC
* *
1472213 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
1472255 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
1472297 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
1472332 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:1472272 original size:12 final size:11
Alignment explanation
Indices: 1472246--1472321 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
1472236 TCTATTATCT
*
1472246 CTCCTGTCTCTC
1 CTCCTATCTC-C
1472258 CTCCTATCATCC
1 CTCCTATC-TCC
1472270 CTCCTATCT--
1 CTCCTATCTCC
*
1472279 CTACTATCT--
1 CTCCTATCTCC
*
1472288 CTCCTGTCTCTC
1 CTCCTATCTC-C
1472300 CTCCTATCATCC
1 CTCCTATC-TCC
*
1472312 CTCCTCTCTC
1 CTCCTATCTC
1472322 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:1472273 original size:24 final size:24
Alignment explanation
Indices: 1472237--1472322 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
1472227 CCTCCTCTCT
* *
1472237 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
1472261 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
1472282 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
1472303 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
1472323 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:1472297 original size:18 final size:18
Alignment explanation
Indices: 1472228--1472298 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
1472218 CCTGTCATCC
* *
1472228 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
1472246 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
1472268 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
1472288 CTCCTGTCTCT
1 CTCCTGTCTCT
1472299 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:1473106 original size:19 final size:19
Alignment explanation
Indices: 1473079--1473115 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
1473069 TTTTTTTTTC
1473079 CTTTCTTTTTGTATTCTTT
1 CTTTCTTTTTGTATTCTTT
*
1473098 CTTTTTTTTTGTATTCTT
1 CTTTCTTTTTGTATTCTT
1473116 GAAAAAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.05, C:0.14, G:0.05, T:0.76
Consensus pattern (19 bp):
CTTTCTTTTTGTATTCTTT
Found at i:1479928 original size:476 final size:476
Alignment explanation
Indices: 1478906--1483191 Score: 4937
Period size: 476 Copynumber: 9.1 Consensus size: 476
1478896 ACTATTCAAG
* * * * ** * * *
1478906 TTTGATTCTATCAAAAACGATGGAAAGAAAACCTTTTTTTGCGGCAGCAAAGCATCAGT-TCAAG
1 TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACAACACCAAAGCATCAATGTCATG
* * * * **
1478970 TATCTTATTGAAGGGAATGTGCTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACAAGAA
66 TATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAA
* * * * * * *
1479035 TCGATGCTTATTTGATTTAAGGGATGAGCTTTGATATT-CGAGAAAATGGGGCAAAGGAAAGATT
131 TCGATGCTTGTTTTATTTAAGGGATGAACTTTGATTTTAAG-GAAAATAGGGCAAAGAAAAGATT
* * *
1479099 TCCAAGCAAAAGGAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATCA-TGCCTA
195 TCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAT-AGTGCCTA
* * * *
1479163 ATCACAAAATGAATGAAG---ATTACTAGAATCCCAGTTTGACT-TATTTAAGGCACGAACTTAG
259 ATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCT-TTTGAGGCATGAACTTAG
* * * * * * *
1479224 ACTTTAAAAAAATTGGTGGGAAGAAAGCCATTT-TTGTGACACTAAAACATTAATATCATGTATC
323 ACTTTACAAAAATTAGTGGGAAGAAAGCC-TTTCTTGCGAAACCAAAGCATTAATATCGTGTATC
* * * * *
1479288 CTAATG-GAAAAACTATGTTTATGCTGCCTAATCCTGAAAAGAATAGGGCTTAGTATGAGTATTA
387 CTAATGAG-AAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTC
* *
1479352 ATGTTTATCTAATTTAAGAGACAAAC
451 ATGTTTGTCTTATTTAAGAGACAAAC
* * * ** *
1479378 TTTGATTCGATCAAAAACGATGGAAATACTAGCTTTTCTTACAACACCAAAGCATCAATGTCATT
1 TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACAACACCAAAGCATCAATGTCATG
* *
1479443 TATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAAACTTGAATAGAATGGAGACTATTATGAGAA
66 TATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAA
* * *
1479508 TCGATGCTTATTTTATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGTTTT
131 TCGATGCTTGTTTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT
* ** * *
1479573 TCATGCAAAAGAAAATCATCACCATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGACTAAT
196 CCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
* * * * * * *
1479638 CACAAAATGAGTGAAGATCAATGCCAGAATTCAAGTTTGTCCCTTTTGAGGGATGAACTTAGACT
261 CACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCTTTTGAGGCATGAACTTAGACT
* * * * *
1479703 TTACAAAAATTAGTGGGAAGAAAGCCTTTCATACGAAAGCAAAGCATTAATACCGTGTATCCTAC
326 TTACAAAAATTAGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATTAATATCGTGTATCCTAA
* * *
1479768 CGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGTATAGGGATTAGTATGACTTTTCGA-GT
391 TGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTC-ATGT
*
1479832 TTGTCTTATTTAAGATACAAAC
455 TTGTCTTATTTAAGAGACAAAC
* * *
1479854 TTTG-TCTCTATAAAAAATGGTGGACAA-AAAAGCTTTTCTTACAACACCAAAGCATCATTGTCA
1 TTTGAT-TCTATCAAAAACGGTGGA-AAGAAAAGCTTTTCTTACAACACCAAAGCATCAATGTCA
* ** *
1479917 TGTATCCTAATGAAGGGAATGTGTTTTTAG-TTCCCAATCTT-AAAATGAATAAAGACTGTTATG
64 TGTATCCTAATGAAGGGAATGTG-TTTTGGCTTCCCAATCTTGAAAA-GAATGGAGACTATTATG
* * * * *
1479980 AG-A--GATGCTTGTCTAATTTAAGGGATAAACTTTCATTTTAAGCAAAATAGGGCAAAGAAAAG
127 AGAATCGATGCTTGTTTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG
* **
1480042 ATTTTCATGCAAAAGAAAATCATCAATATCATTTATTATAATGAGGAGAATGTGTTTATAGTGCC
192 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
** * * **
1480107 TAATCACAAAATGAATGAAGATCATTAGAAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTA
257 TAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCTTTTGAGGCATGAACTTA
* * * * *
1480172 GACCTTACAAAAATT-GATGGGAAGAAAGCCTTTCTTGGGACACCAAAAC-TTCAATATCCTGTA
322 GACTTTACAAAAATTAG-TGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATT-AATATCGTGTA
* * * *
1480235 TCTTATTGCGAAGAC------TA---TG-----T-CTGAAAAGAATAGGGATTAGTATGAGTATT
385 TCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATT
1480285 CATGTTTGT-TTAATTTAAGAGACAAAC
450 CATGTTTGTCTT-ATTTAAGAGACAAAC
*
1480312 TTTGATTCTATCAAAAGCGGTGGAAAGAAAAGCTTTTCTTACAACACCAAAGCATCAATGTCATG
1 TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACAACACCAAAGCATCAATGTCATG
* * *
1480377 TATCCTAATGAAGGAAATGTGTTTTGGCTTCCCAATCTTTAAAAGAATGGAGACTATTACGAGAA
66 TATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAA
* * * * * * *
1480442 TCAATGCTTGCTTTACTTAATGGATGACCTTTGATTTTAGGGAAAAT-GCGGCAAAGAAAATATT
131 TCGATGCTTGTTTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAG-GGCAAAGAAAAGATT
* * * **
1480506 TCCAAGCAAAAGGAAATCATCAATATCATTTATCCTAATGAGGAAAAAATGTTTATAGTGCCTAA
195 TCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
* * *
1480571 TCACAAAATGAATAAAAATCATTACTAGAATCCACA-TTTGTCTCATTTGAGGCATGAACTTAGA
260 TCACAAAATGAATGAAGATCATTACTAGAATCCA-AGTTTGTCTCTTTTGAGGCATGAACTTAGA
* * * *
1480635 CTTTCAAAAAAATTGGTGGGAAGAAAGCATTTCTTGCGAAACCATAGCA-TATATAT-GATGTAT
324 CTTT-ACAAAAATTAGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATTA-ATATCG-TGTAT
* ** ** * ** * *
1480698 CCTAATGAGAAGACTATGTTTATAGTGCCTAATCGAGAAAAGAACGGGGATGAAAAAGAATATTC
386 CCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTC
* * *
1480763 ATGATTGTCGTATTTAGGAGACAAAC
451 ATGTTTGTCTTATTTAAGAGACAAAC
* * * * *
1480789 TTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCAACGCTAAAGCATCAATGTCAAG
1 TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACAACACCAAAGCATCAATGTCATG
* * * ** * * *
1480854 TAT-CTTATGAATGGAATGTGTTTTGGCTTCCCAAACTTGAAACTAATGGAGACTGTAATGATAA
66 TATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAA
* * *
1480918 TCGATGCTTGTTTTATTTGAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAATGAAAAGTTTT
131 TCGATGCTTGTTTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT
* * * *
1480983 CCGTGCAAAAGAAAATCATCAATATCATTTATCCTATTGTGGAGAATTTGTTTATAGTGCCTAAT
196 CCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
* * * * **
1481048 CACAAAAAGAATGAAGATCATTACGAGAATCCATGTTTGTCTTTTTTGAGAAATGAACTTAGACT
261 CACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCTTTTGAGGCATGAACTTAGACT
* * * * * * *
1481113 TTACAAAAATTAATGGGAAAAAAGCCTTTCATGCGAAACCAAAGCTTTAATATCCTGTATACTAT
326 TTACAAAAATTAGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATTAATATCGTGTATCCTAA
* * * * *
1481178 TAAGAAGACTATGTTTATGGCGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTTTTGAAGTT
391 TGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTT
*
1481243 TGTCTTATTTAGGATG-CAAAC
456 TGTCTTATTTAAGA-GACAAAC
* * * * * *
1481264 TTTGATTTTATCCAAAACGGTGGAAAGAAAAGCTTTTCTTACAGCACCAAAGCATCATTATCAAG
1 TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACAACACCAAAGCATCAATGTCATG
* * ** **
1481329 TATCCTAATGAAGGGAATGTGTTTTGGCTTCCTAATCTTGAAAAGAATGGAGATTGCTACAAGAA
66 TATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAA
* * * * * *
1481394 TCAATGCTTGTTTTCTTTATGGGATGAACTTTGATATTATGGAAAATGGGGCAAAGAAAAGATTT
131 TCGATGCTTGTTTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT
* * *
1481459 CCAAGCAAAAGGAAATCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTATAGTGCCTAAT
196 CCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
* * * * *
1481524 CACAAAATGAATGAAGATCATTACTAGAATCAAAGTTTGACTCATTTAAGGCACGAACTTAGACT
261 CACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCTTTTGAGGCATGAACTTAGACT
* * * * ** * *
1481589 GTGCAAAAAATTGGTAGGAAGAAAGCCTTTCTTGC-AAAAGAAAGCATCAATATCATGTATCCTA
326 TTAC-AAAAATTAGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATTAATATCGTGTATCCTA
* * * * * * * *
1481653 ATGGGAAGACTATGTCTATGGTGCCGAATCTTGAAAAAAATGGGGATTAGTTTGACTATTCAAGT
390 ATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGT
* **
1481718 TTGTCTTGTTTAAGAGACAATT
455 TTGTCTTATTTAAGAGACAAAC
* * * ** * *
1481740 TTTGAATCTATCAAAAACGATGGGAAGACTAGCTTTTCTTGCGACACCAAAGCATCAATGTCATG
1 TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACAACACCAAAGCATCAATGTCATG
* * *
1481805 TATCCTAATGAAGGAAATGTGTTTCTAG-TTCCCAATCTTGAAAAGAATGGAGA-TAGTTACGAG
66 TATCCTAATGAAGGGAATGTGTTT-TGGCTTCCCAATCTTGAAAAGAATGGAGACTA-TTATGAG
* * *
1481868 AATCGATGCTTGTTTTATTTCAGGGATGAACTTTGATTTTAAGGAAAATATGGCAAATAAAAGAT
129 AATCGATGCTTGTTTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
* * *
1481933 TTCCATGCAAAAGATAATCATCAATATCATTTACCCTATTGAGGAGAATGTGTTTATAGTGCCTA
194 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * * * * ** *
1481998 ATCACAAAATGAATAAAGATTATTA-TGAGATTCCATGATTGTCTCTTTTTTGGCATGAACTTGG
259 ATCACAAAATGAATGAAGATCATTACT-AGAATCCAAGTTTGTCTCTTTTGAGGCATGAACTTAG
* * * *
1482062 ACTTTACAAAAATTAGTGGAAAG-AAGACCTTTCATGTGAAACCAAAGCTTTAATATCGTGTATC
323 ACTTTACAAAAATTAGTGGGAAGAAAG-CCTTTCTTGCGAAACCAAAGCATTAATATCGTGTATC
* * ** *
1482126 CTAATTAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATTGTTATTAGCATGACTATTCA
387 CTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCA
* * *
1482191 TGTTTTTCTAATTTAAAAGACAAAC
452 TGTTTGTCTTATTTAAGAGACAAAC
* * * ** *
1482216 TTAGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACGACATGAAAGCATCAATGTCTTG
1 TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACAACACCAAAGCATCAATGTCATG
* * *
1482281 TATCCTAATGAAGGGAATGTGTTTGGGCTTCCCAATCTTTAAAAGAATGAAGAC---TAT--GAA
66 TATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAA
* * *
1482341 TCGTTGCTTGTTTTATTTAAGGGATGAACTTTGATTTT-GGGAAAATGGGGCAAAGAAAAGATTT
131 TCGATGCTTGTTTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT
* * *
1482405 CCAAGCAAAAGGAAATCATCAATATCATTTATCCTAGTGAGGAGAATGTGTTTATAGTGCCTAAT
196 CCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
* *
1482470 CACAAAATGGATGAAGATCATTACTAGAATCCACA-TTTGTCTCATTTGAGGCATGAACTTAGAC
261 CACAAAATGAATGAAGATCATTACTAGAATCCA-AGTTTGTCTCTTTTGAGGCATGAACTTAGAC
* * * *
1482534 TTT-CAACAAATTGGTGGGGTAGAAAGCCTTTTTTGCGAAACCACAGCA-TATATAT-GATGTAT
325 TTTACAA-AAATTAGT-GGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATTA-ATATCG-TGTAT
* * * * **
1482596 CCTAATGAGAAGACTATGTTTATGGTGCCTTATCCAGAAAAGAA-CGTGGATTAGAATGGGTATT
386 CCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAG-GGATTAGTATGACTATT
* * *
1482660 CATGTTTGTCATATTCAGGAGACAAAC
450 CATGTTTGTCTTATTTAAGAGACAAAC
*** *
1482687 TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATAAATGTCATG
1 TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACAACACCAAAGCATCAATGTCATG
* * * *
1482752 TATCCTAACGAAGGGAATGTGTTTTGGCTTCCTAAACATGAAAAGAATGGAGACTATTATGAGAA
66 TATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAA
* * * *
1482817 TC-ATTGCTTGTCTTCTTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGTTT
131 TCGA-TGCTTGTTTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
* * * * *
1482881 TCCATGTAAAAGAAAATCATCAATATCATTTATCCTATTGAGAAGAATGTATTTATAGTGCCCAA
195 TCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
* *
1482946 TCACAAAATGAATGAAGATCATTA-TGAGAATCCATGTTTGTCTCTTTTGAGGGATGAACTTAGA
260 TCACAAAATGAATGAAGATCATTACT-AGAATCCAAGTTTGTCTCTTTTGAGGCATGAACTTAGA
* * * * * *
1483010 CTTTACAAAAATTAGTGGGAAGAATGCCTTTCATGGGAAACCAAAGCCTTAATATCATTTATCCT
324 CTTTACAAAAATTAGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATTAATATCGTGTATCCT
* * * ** *
1483075 AATGAGAAGACTGTGTTTATGGTGCCTAATCTTGAAAAGAATATGGATTAGTATCTCTATTCTTG
389 AATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATG
*
1483140 TTTGTCTTATTTAAGATACAAAC
454 TTTGTCTTATTTAAGAGACAAAC
* * *
1483163 TTTGATTCTATTAAAAACAGTGAAAAGAA
1 TTTGATTCTATCAAAAACGGTGGAAAGAA
1483192 TAGAGACTAT
Statistics
Matches: 3197, Mismatches: 533, Indels: 164
0.82 0.14 0.04
Matches are distributed among these distances:
457 10 0.00
458 150 0.05
459 7 0.00
460 1 0.00
461 165 0.05
462 56 0.02
463 1 0.00
464 2 0.00
467 2 0.00
468 2 0.00
469 3 0.00
470 147 0.05
471 250 0.08
472 55 0.02
473 412 0.13
474 7 0.00
475 207 0.06
476 1423 0.45
477 293 0.09
478 4 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (476 bp):
TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACAACACCAAAGCATCAATGTCATG
TATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAA
TCGATGCTTGTTTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT
CCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
CACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCTTTTGAGGCATGAACTTAGACT
TTACAAAAATTAGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATTAATATCGTGTATCCTAA
TGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTT
TGTCTTATTTAAGAGACAAAC
Found at i:1484471 original size:19 final size:19
Alignment explanation
Indices: 1484433--1484500 Score: 88
Period size: 19 Copynumber: 3.6 Consensus size: 19
1484423 GCCAATTTCT
1484433 TGTATCGATACAAT--ACA
1 TGTATCGATACAATGAACA
1484450 TGTATCGATACAATGAACA
1 TGTATCGATACAATGAACA
*
1484469 TGTATCGATACAAAGCATA-A
1 TGTATCGATACAATG-A-ACA
1484489 TGTATCGATACA
1 TGTATCGATACA
1484501 TCTGGATATG
Statistics
Matches: 46, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
17 14 0.30
19 17 0.37
20 14 0.30
21 1 0.02
ACGTcount: A:0.41, C:0.16, G:0.15, T:0.28
Consensus pattern (19 bp):
TGTATCGATACAATGAACA
Found at i:1518195 original size:21 final size:21
Alignment explanation
Indices: 1518166--1518210 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
1518156 AAGTTTTTAT
*
1518166 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
1518186 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
1518208 TTT
1 TTT
1518211 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:1520463 original size:13 final size:13
Alignment explanation
Indices: 1520445--1520470 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1520435 ATTTTTTTTG
1520445 TGTATCGATACAT
1 TGTATCGATACAT
1520458 TGTATCGATACAT
1 TGTATCGATACAT
1520471 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1521004 original size:31 final size:32
Alignment explanation
Indices: 1520937--1521036 Score: 130
Period size: 31 Copynumber: 3.1 Consensus size: 32
1520927 TTCAACGATT
*
1520937 TGTATTGATACATAAAGTATTGTATCGATACAA
1 TGTATTGATACAT-AAGTATTGTATCGACACAA
*
1520970 TGTATTGATACATAAGTGTTGTA-CGACACAA
1 TGTATTGATACATAAGTATTGTATCGACACAA
* * * *
1521001 TGTATCGATACATAAGTTTTGTATCAATACAA
1 TGTATTGATACATAAGTATTGTATCGACACAA
1521033 TGTA
1 TGTA
1521037 AGCTACTGCC
Statistics
Matches: 60, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
31 28 0.47
32 19 0.32
33 13 0.22
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.36
Consensus pattern (32 bp):
TGTATTGATACATAAGTATTGTATCGACACAA
Found at i:1521091 original size:13 final size:13
Alignment explanation
Indices: 1521073--1521097 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1521063 ATTACTCAAA
1521073 TGTATCGATACAT
1 TGTATCGATACAT
1521086 TGTATCGATACA
1 TGTATCGATACA
1521098 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1521148 original size:52 final size:52
Alignment explanation
Indices: 1521106--1521234 Score: 233
Period size: 52 Copynumber: 2.5 Consensus size: 52
1521096 CACTGATCTT
1521106 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
1521158 TGTATCTG-TACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATC-GATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1521210 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
1521235 TCATATTTCA
Statistics
Matches: 74, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
51 1 0.01
52 72 0.97
53 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:1528074 original size:10 final size:10
Alignment explanation
Indices: 1528061--1528100 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
1528051 AAAAGTGATG
1528061 AAAAAAAAAC
1 AAAAAAAAAC
1528071 -AAAAAAAAC
1 AAAAAAAAAC
1528080 AAAAAAAAAC
1 AAAAAAAAAC
*
1528090 ACAGAAAAAAC
1 A-AAAAAAAAC
1528101 GTGCAAAGGC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
9 9 0.33
10 10 0.37
11 8 0.30
ACGTcount: A:0.85, C:0.12, G:0.03, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAC
Found at i:1528076 original size:9 final size:9
Alignment explanation
Indices: 1528062--1528087 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
1528052 AAAGTGATGA
1528062 AAAAAAAAC
1 AAAAAAAAC
1528071 AAAAAAAAC
1 AAAAAAAAC
1528080 AAAAAAAA
1 AAAAAAAA
1528088 ACACAGAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (9 bp):
AAAAAAAAC
Found at i:1528085 original size:21 final size:21
Alignment explanation
Indices: 1528061--1528100 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
1528051 AAAAGTGATG
1528061 AAAAAAAAACAAAAAAAACAA
1 AAAAAAAAACAAAAAAAACAA
* *
1528082 AAAAAAACACAGAAAAAAC
1 AAAAAAAAACAAAAAAAAC
1528101 GTGCAAAGGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.85, C:0.12, G:0.03, T:0.00
Consensus pattern (21 bp):
AAAAAAAAACAAAAAAAACAA
Found at i:1528446 original size:15 final size:13
Alignment explanation
Indices: 1528422--1528461 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
1528412 CCTAATCTTC
1528422 ACAAA-AAAAAAA
1 ACAAACAAAAAAA
*
1528434 CAAAAACAAAAAAA
1 -ACAAACAAAAAAA
1528448 ACAAACAAAAAAA
1 ACAAACAAAAAAA
1528461 A
1 A
1528462 AGGAAGGAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 17 0.71
14 7 0.29
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (13 bp):
ACAAACAAAAAAA
Found at i:1528448 original size:19 final size:18
Alignment explanation
Indices: 1528424--1528462 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
1528414 TAATCTTCAC
1528424 AAAAAAAAAACAAAAACAA
1 AAAAAAAAAACAAAAA-AA
*
1528443 AAAAAACAAACAAAAAAA
1 AAAAAAAAAACAAAAAAA
1528461 AA
1 AA
1528463 GGAAGGAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (18 bp):
AAAAAAAAAACAAAAAAA
Found at i:1529459 original size:31 final size:30
Alignment explanation
Indices: 1529421--1529728 Score: 350
Period size: 31 Copynumber: 9.9 Consensus size: 30
1529411 ATACCTTTTT
* *
1529421 AAAGTCCATGACTCAGTGGCAATCTCTTCTC
1 AAAGTCCACGACTCAGTGGC-ATCTTTTCTC
* *
1529452 AAAGTCCACGACTCAGTGGCAATCTCTGCTC
1 AAAGTCCACGACTCAGTGGC-ATCTTTTCTC
*
1529483 AAAGTCCACAACTCAGTGGCATCCTTTTCTTC
1 AAAGTCCACGACTCAGTGGCAT-CTTTTC-TC
* * *
1529515 AAAAGTCCATGACTCAGTGGCAATCTCTGCTC
1 -AAAGTCCACGACTCAGTGGC-ATCTTTTCTC
1529547 AAAGTCCACGACTCAGTGGCATCGTTTTCTTC
1 AAAGTCCACGACTCAGTGGCATC-TTTTC-TC
*
1529579 AAAGTCCATGACTCAGTGGCAT-TTTGTCTC
1 AAAGTCCACGACTCAGTGGCATCTTT-TCTC
*
1529609 AAAGTCCACGACTCAGTGGCATCCTTTTCTTT
1 AAAGTCCACGACTCAGTGGCAT-CTTTTC-TC
1529641 AAAGTCCACGACTCAGTGGCAT-TTTGTCTC
1 AAAGTCCACGACTCAGTGGCATCTTT-TCTC
*
1529671 AAAGTCCACGACTCAGTGGCATTTTTTCTTC
1 AAAGTCCACGACTCAGTGGCATCTTTTC-TC
* * * *
1529702 AAAGCCCACAACTCCGTGGCACCTTTT
1 AAAGTCCACGACTCAGTGGCATCTTTT
1529729 TCTTTTTAAA
Statistics
Matches: 243, Mismatches: 21, Indels: 26
0.84 0.07 0.09
Matches are distributed among these distances:
30 59 0.24
31 107 0.44
32 53 0.22
33 22 0.09
34 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.30
Consensus pattern (30 bp):
AAAGTCCACGACTCAGTGGCATCTTTTCTC
Found at i:1529535 original size:64 final size:62
Alignment explanation
Indices: 1529421--1529722 Score: 398
Period size: 62 Copynumber: 4.9 Consensus size: 62
1529411 ATACCTTTTT
* *
1529421 AAAGTCCATGACTCAGTGGCAAT-CTCTTC-TCAAAGTCCACGACTCAGTGGCAATCTCTG-CTC
1 AAAGTCCACGACTCAGTGGC-ATCCTTTTCTTCAAAGTCCACGACTCAGTGGC-AT-TCTGTCTC
* *
1529483 AAAGTCCACAACTCAGTGGCATCCTTTTCTTCAAAAGTCCATGACTCAGTGGCAATCTCTG-CTC
1 AAAGTCCACGACTCAGTGGCATCCTTTTCTTC-AAAGTCCACGACTCAGTGGC-AT-TCTGTCTC
* * *
1529547 AAAGTCCACGACTCAGTGGCATCGTTTTCTTCAAAGTCCATGACTCAGTGGCATTTTGTCTC
1 AAAGTCCACGACTCAGTGGCATCCTTTTCTTCAAAGTCCACGACTCAGTGGCATTCTGTCTC
* *
1529609 AAAGTCCACGACTCAGTGGCATCCTTTTCTTTAAAGTCCACGACTCAGTGGCATTTTGTCTC
1 AAAGTCCACGACTCAGTGGCATCCTTTTCTTCAAAGTCCACGACTCAGTGGCATTCTGTCTC
* * * *
1529671 AAAGTCCACGACTCAGTGGCAT-TTTTTCTTCAAAGCCCACAACTCCGTGGCA
1 AAAGTCCACGACTCAGTGGCATCCTTTTCTTCAAAGTCCACGACTCAGTGGCA
1529723 CCTTTTTCTT
Statistics
Matches: 221, Mismatches: 15, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
61 30 0.14
62 109 0.49
63 22 0.10
64 60 0.27
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.29
Consensus pattern (62 bp):
AAAGTCCACGACTCAGTGGCATCCTTTTCTTCAAAGTCCACGACTCAGTGGCATTCTGTCTC
Found at i:1530156 original size:100 final size:98
Alignment explanation
Indices: 1529609--1530962 Score: 988
Period size: 100 Copynumber: 13.6 Consensus size: 98
1529599 ATTTTGTCTC
* * * * * *
1529609 AAAGTCCACGACTCAGTGGCATCC-TTTT-CTTTAAAGTCCACGACTCAGTGGCA--TT-TTGTC
1 AAAGCCCACAACTCCGTGGCA-CCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCTT-T-
* * * *
1529669 TCAAAGTCCACGACTCAGTGGCA--TTTTTTC-TTC
63 TCAAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* *
1529702 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTCCTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCCTTTT-AAGTCCACAACTCCGTGGCACC--TT-CTT
* * *
1529767 TTTAAAGCCCACAACTCCGTGGCACC---TTCCTTTC
62 TTCAAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
*
1529801 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTC-CTTTTAAGTCCACAACTCCGTGGCACC---TTCTT
* * * * *
1529866 TTTAAAGCCCACAACTCCGTGACACTTTTTTCTTTTT
62 TTCAAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* *
1529903 AAAGCCCACAACTCCGTGGCACATTTTT-CTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTC
1 AAAGCCCACAACTCCGTGGCACCTTTTTCCTTTT--AAGTCCACAACTCCGTGGCAC-C---TT-
* * * *
1529967 CCTTTT-AAAGTCCACGACCCCGTGGCACCTTGTTCCTTTC
59 -CTTTTCAAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* * *
1530007 AAAGTCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGAACCTTCTTTTC
1 AAAGCCCACAACTCCGTGGCAC-CTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCTTTTC
*
1530072 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
65 AAAGTCCACAACTCCGTGGCAC-CTTTTT-CCTTTT
* * * * *
1530108 AAAGTCCACAGCTCCATGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCTTTTCA
1 AAAGCCCACAACTCCGTGGCACCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCTTTTCA
* *
1530173 AAGCCCACAACTCCGTGGCACTTTTTTTCCCTTTT
66 AAGTCCACAACTCCGTGGCAC-CTTTTT-CCTTTT
* * * * * * * * *
1530208 AAAGTCCACGACCCCATGGCACCTTGTTCCTTTCAAAGTTCGCAACTCCGTGGCACTCTTTTTCC
1 AAAGCCCACAACTCCGTGGCACCTTTTTCCTTT-TAAGTCCACAACTCCGTGGCAC-CTTCTT--
*
1530273 TTCTAAGTCCACAACTCCGTGGCACC---TT-CTTTT
62 TTCAAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* * * *
1530306 CAAAGCTCACAACTCCGTGGCACTTTTTTTCCCTTTTAAAGTCCACAACTCCATGGCACCTTGTT
1 -AAAGCCCACAACTCCGTGGCAC-CTTTTT-CCTTTT-AAGTCCACAACTCCGTGGCACCTTCTT
** * *
1530371 CCTTTTAAGTCCACGACTTCGTGGCACC---TT-CTTTT
62 --TTCAAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
*
1530406 CAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGTCCACAACTCCGTGGCACCTTGTT
1 -AAAGCCCACAACTCCGTGGCAC-CTTTTT-CCTTTT-AAGTCCACAACTCCGTGGCACCTTCTT
** *
1530471 CCTTTTAAGTCCACGACTCCGTGGCACC---TT-CTTTT
62 --TTCAAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* * *
1530506 CAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTAAAGTCCACGACCCCGTGGCACCTTGTT
1 -AAAGCCCACAACTCCGTGGCAC-CTTTTT-CCTTTT-AAGTCCACAACTCCGTGGCACC---TT
* * *
1530571 CCTTTCAAAGTCCACAACTCCCTGGCACTCTTTTTCCTTCT
59 CTTTTCAAAGTCCACAACTCCGTGGCAC-CTTTTTCCTTTT
* * * *
1530612 -AAGTCCATAACTCCGTGGCA-C--TTT-CTTTTCAAAG-CAAACAACTCCGTGGCA-CTTTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCCTTTT--AAGTC-CACAACTCCGTGGCACCTTCTTT
* *
1530670 TCCCTTTTAAAGTCCACAACTCCGTGGCACCATGTTCCTTTT
63 T--C----AAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* * * ** * *
1530712 -AAGTCCACGACTCCGTGGCACCTTCTT--TTCAAAGCCCACAACTCTGTGGCACTCTTTTTCCC
1 AAAGCCCACAACTCCGTGGCACCTTTTTCCTTTTAAGTCCACAACTCCGTGGCAC-C---TT--C
* *
1530774 TTTT-AAAGTCCACAACCCCGTGGCACCTTGTTCCTTTT
60 TTTTCAAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* * * * * * *
1530812 -AAGTCCACGACTCCGTGGCACC---ATCCTTTCAAAGTCCGCGACTCTGTGGCACCTTCTTTTC
1 AAAGCCCACAACTCCGTGGCACCTTTTTCCTTT-TAAGTCCACAACTCCGTGGCACCTTCTTTTC
* * *
1530873 AAAGCCCACAACTCTGTGGCGCTCTTTTTCCCTTTT
65 AAAGTCCACAACTCCGTGGCAC-CTTTTT-CCTTTT
* * *
1530909 AAAGCCCACAACTCCGTGGCACCTTGTTCTTTTTAAGTCCACAACTTCGTGGCA
1 AAAGCCCACAACTCCGTGGCACCTTTTTCCTTTTAAGTCCACAACTCCGTGGCA
1530963 TCTTTCACCC
Statistics
Matches: 1062, Mismatches: 127, Indels: 137
0.80 0.10 0.10
Matches are distributed among these distances:
92 2 0.00
93 22 0.02
94 8 0.01
95 40 0.04
96 7 0.01
97 8 0.01
98 40 0.04
99 156 0.15
100 455 0.43
101 117 0.11
102 63 0.06
103 12 0.01
104 106 0.10
105 14 0.01
106 8 0.01
107 4 0.00
ACGTcount: A:0.20, C:0.34, G:0.14, T:0.33
Consensus pattern (98 bp):
AAAGCCCACAACTCCGTGGCACCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCTTTTCA
AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
Found at i:1530217 original size:235 final size:231
Alignment explanation
Indices: 1529672--1530967 Score: 1521
Period size: 235 Copynumber: 5.5 Consensus size: 231
1529662 TTTTGTCTCA
* * * *
1529672 AAGTCCACGACTCAGTGGCA-TTTTTTCTTCAAAGCCCACAACTCCGTGGCAC-CTTTTT-CTTT
1 AAGTCCACGACTCCGTGGCACCTTCTT-TTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTT
* *
1529734 TTAAAGCCCACAACTCCGTGGCACCTT-TTCCTTTTTAAAGCCCACAACTCCGTGGCACC---TT
65 TTAAAGTCCACAACTCCGTGGCACCTTGTTCC--TTTAAAGTCCACAACTCCGTGGCACCTTTTT
*
1529795 CCTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTTAAGTCCACAACTCCGTGGCACCTT
128 CC-TTCAAAGCCCACAACTCCGTGGCACC--TTTC-TTTTAAAGTCCACAACTCCGTGGCACCTT
* * * * * * *
1529860 TTTCTTTTTAAAGCCCACAACTCCGTGACACTTTTTTCTTTTT
189 TTTCCTTTTAAAGTCCACAACTCCATGGCACCTTGTTCCTTTT
* * *
1529903 AAAGCCCACAACTCCGTGGCACATTTTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCC
1 -AAGTCCACGACTCCGTGGCAC---CTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCC
* *
1529968 CTTTTAAAGTCCACGACCCCGTGGCACCTTGTTCCTTTCAAAGTCCACAACTCCGTGGCACTCTT
62 CTTTTAAAGTCCACAACTCCGTGGCACCTTGTTCCTTT-AAAGTCCACAACTCCGTGGCAC-CTT
* * * *
1530033 TTTCCTTCTAAGTCCACAACTCCGTGGAACC-TTCTTTTCAAAGCCCACAACTCCGTGGCACTCT
125 TTTCCTTCAAAGCCCACAACTCCGTGGCACCTTTCTTTT-AAAGTCCACAACTCCGTGGCAC-CT
*
1530097 TTTTCCCTTTTAAAGTCCACAGCTCCATGGCACCTTGTTCCTTTT
188 TTTT-CCTTTTAAAGTCCACAACTCCATGGCACCTTGTTCCTTTT
*
1530142 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTTTTTTTCCCTTT
1 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
* * * * *
1530207 TAAAGTCCACGACCCCATGGCACCTTGTTCCTTTCAAAGTTCGCAACTCCGTGGCACTCTTTTTC
66 TAAAGTCCACAACTCCGTGGCACCTTGTTCCTTT-AAAGTCCACAACTCCGTGGCAC-CTTTTTC
* * *
1530272 CTTCTAAGTCCACAACTCCGTGGCACC-TTCTTTTCAAAG-CTCACAACTCCGTGGCACTTTTTT
129 CTTCAAAGCCCACAACTCCGTGGCACCTTTCTTTT-AAAGTC-CACAACTCCGTGGCAC-CTTTT
1530335 TCCCTTTTAAAGTCCACAACTCCATGGCACCTTGTTCCTTTT
191 T-CCTTTTAAAGTCCACAACTCCATGGCACCTTGTTCCTTTT
*
1530377 AAGTCCACGACTTCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
1 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
* * *
1530442 TAAAGTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCTT--T
66 TAAAGTCCACAACTCCGTGGCACCTTGTTCCTTTAAAGTCCACAACTCCGTGGCACCTTTTTCCT
* * * *
1530505 TCAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTAAAGTCCACGACCCCGTGGCACCTTGT
131 TCAAAGCCCACAACTCCGTGGCAC-C--TTT--CTTTTAAAGTCCACAACTCCGTGGCACCTTTT
* * * *
1530570 TCCTTTCAAAGTCCACAACTCCCTGGCACTCTTTTTCCTTCT
191 TCCTTTTAAAGTCCACAACTCCATGGCAC-CTTGTTCCTTTT
** * ** *
1530612 AAGTCCATAACTCCGTGGCACTTTCTTTTCAAAGCAAACAACTCCGTGGCACTTTTTTTCCCTTT
1 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
* * * *
1530677 TAAAGTCCACAACTCCGTGGCACCATGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCTT--T
66 TAAAGTCCACAACTCCGTGGCACCTTGTTCCTTTAAAGTCCACAACTCCGTGGCACCTTTTTCCT
* * *
1530740 TCAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTAAAGTCCACAACCCCGTGGCACCTTGT
131 TCAAAGCCCACAACTCCGTGGCAC-C--TTT--CTTTTAAAGTCCACAACTCCGTGGCACCTTTT
* * * *
1530805 TCCTTTT-AAGTCCACGACTCCGTGGCACC---ATCCTTTCA
191 TCCTTTTAAAGTCCACAACTCCATGGCACCTTGTTCCTTT-T
* * * *
1530843 AAGTCCGCGACTCTGTGGCACCTTCTTTTCAAAGCCCACAACTCTGTGGCGCTCTTTTTCCCTTT
1 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
* * * * *
1530908 TAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTTAAGTCCACAACTTCGTGGCATCTTT
66 TAAAGTCCACAACTCCGTGGCACCTTGTTCCTTTAAAGTCCACAACTCCGTGGCACCTTT
1530968 CACCCTTTTT
Statistics
Matches: 954, Mismatches: 85, Indels: 51
0.88 0.08 0.05
Matches are distributed among these distances:
230 5 0.01
231 130 0.14
232 18 0.02
233 6 0.01
234 64 0.07
235 529 0.55
236 36 0.04
237 77 0.08
238 30 0.03
239 32 0.03
240 23 0.02
241 4 0.00
ACGTcount: A:0.20, C:0.34, G:0.13, T:0.33
Consensus pattern (231 bp):
AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
TAAAGTCCACAACTCCGTGGCACCTTGTTCCTTTAAAGTCCACAACTCCGTGGCACCTTTTTCCT
TCAAAGCCCACAACTCCGTGGCACCTTTCTTTTAAAGTCCACAACTCCGTGGCACCTTTTTCCTT
TTAAAGTCCACAACTCCATGGCACCTTGTTCCTTTT
Found at i:1530425 original size:335 final size:335
Alignment explanation
Indices: 1529707--1530962 Score: 1596
Period size: 335 Copynumber: 3.7 Consensus size: 335
1529697 TCTTCAAAGC
* * *
1529707 CCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCAC-C-TTTTCCTTTTT
1 CCACGACTCCGTGGCACC---TTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
* * * *
1529770 AAAGCCCACAACTCCGTGGCACC---TTCCTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTT
63 AAAGTCCACAACTCCGTGGCACCTTGTTCCTTT-TAAGTCCACGACTCCGTGGCACC---TTCTT
** * * * * * * * *
1529832 TTTTAAGTCCACAACTCCGTGGCAC-CTTTTT-CTTTTTAAAGCCCACAACTCCGTGACACTTTT
124 TTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGTCCACGACCCCGTGGCACCTTG
* * * * * * *
1529895 TTCTTTTTAAAGCCCACAACTCCGTGGCAC-ATTTTTCTTTTCAAAGCCCACAACTCCGTGGCAC
189 TTCCTTTCAAAGTCCACAACTCCGTGGCACTCTTTTTC-CTTCTAAGTCCACAACTCCGTGGCAC
* * * * *
1529959 TCTTTTTCCCTTTT-AAAG-TCCACGACCCCGTGGCAC-CTTGTT-CCTTTCAAAGTCCACAACT
253 -C---TT--CTTTTCAAAGCT-CACAACTCCGTGGCACTTTTTTTCCCTTTTAAAGTCCACAACT
* *
1530020 CCGTGGCACTCTTTTTCCTTCTAAGT
311 CCGTGGCAC-CTTGTTCCTTTTAAGT
* *
1530046 CCACAACTCCGTGGAACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAA
1 CCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAA
* *
1530111 GTCCACAGCTCCATGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCTTTTCAAAG
66 GTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCTTTTCAAAG
* *
1530176 CCCACAACTCCGTGGCACTTTTTTTCCCTTTTAAAGTCCACGACCCCATGGCACCTTGTTCCTTT
131 CCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGTCCACGACCCCGTGGCACCTTGTTCCTTT
* *
1530241 CAAAGTTCGCAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCTTCTTTT
196 CAAAGTCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCTTCTTTT
*
1530306 CAAAGCTCACAACTCCGTGGCACTTTTTTTCCCTTTTAAAGTCCACAACTCCATGGCACCTTGTT
261 CAAAGCTCACAACTCCGTGGCACTTTTTTTCCCTTTTAAAGTCCACAACTCCGTGGCACCTTGTT
1530371 CCTTTTAAGT
326 CCTTTTAAGT
*
1530381 CCACGACTTCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAA
1 CCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAA
1530446 GTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCTTTTCAAAG
66 GTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCTTTTCAAAG
*
1530511 CCCACAACTCTGTGGCACTCTTTTTCCCTTTTAAAGTCCACGACCCCGTGGCACCTTGTTCCTTT
131 CCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGTCCACGACCCCGTGGCACCTTGTTCCTTT
* * *
1530576 CAAAGTCCACAACTCCCTGGCACTCTTTTTCCTTCTAAGTCCATAACTCCGTGGCACTTTCTTTT
196 CAAAGTCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCTTCTTTT
** *
1530641 CAAAGCAAACAACTCCGTGGCACTTTTTTTCCCTTTTAAAGTCCACAACTCCGTGGCACCATGTT
261 CAAAGCTCACAACTCCGTGGCACTTTTTTTCCCTTTTAAAGTCCACAACTCCGTGGCACCTTGTT
1530706 CCTTTTAAGT
326 CCTTTTAAGT
*
1530716 CCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTAAA
1 CCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAA
* * *
1530781 GTCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCATCCTTTCAAAG
66 GTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCTTTTCAAAG
* * * * * * * * * *
1530846 TCCGCGACTCTGTGGCAC-C---TT--CTTTTCAAAGCCCACAACTCTGTGGCGCTCTTTTTCCC
131 CCCACAACTCCGTGGCACTCTTTTTCCCTTTT-AAAGTCCACGACCCCGTGGCAC-CTTGTT-CC
* * * * * *
1530905 TTTTAAAGCCCACAACTCCGTGGCAC-CTTGTTCTTTTTAAGTCCACAACTTCGTGGCA
193 TTTCAAAGTCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCA
1530963 TCTTTCACCC
Statistics
Matches: 825, Mismatches: 77, Indels: 38
0.88 0.08 0.04
Matches are distributed among these distances:
329 5 0.01
330 17 0.02
331 34 0.04
332 25 0.03
333 5 0.01
334 19 0.02
335 479 0.58
336 55 0.07
337 28 0.03
338 36 0.04
339 89 0.11
340 26 0.03
341 7 0.01
ACGTcount: A:0.20, C:0.34, G:0.13, T:0.33
Consensus pattern (335 bp):
CCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAA
GTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCTTTTCAAAG
CCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGTCCACGACCCCGTGGCACCTTGTTCCTTT
CAAAGTCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCTTCTTTT
CAAAGCTCACAACTCCGTGGCACTTTTTTTCCCTTTTAAAGTCCACAACTCCGTGGCACCTTGTT
CCTTTTAAGT
Found at i:1531019 original size:33 final size:32
Alignment explanation
Indices: 1530977--1531530 Score: 795
Period size: 33 Copynumber: 17.3 Consensus size: 32
1530967 TCACCCTTTT
1530977 TAAAGCCCACACAAGTCGGTGGCAAACCTTCTC
1 TAAAGCCCACACAAGTCGGTGGC-AACCTTCTC
*
1531010 TAAAGCCCACAGAAGTCGGTGGCAAACCTTCTC
1 TAAAGCCCACACAAGTCGGTGGC-AACCTTCTC
* *
1531043 TAAAGCCCACACAGGTTGGTGGCAAACCTTCTC
1 TAAAGCCCACACAAGTCGGTGGC-AACCTTCTC
1531076 TAAAGCCCACACAAGTCGGTGGCAAACCTTCTC
1 TAAAGCCCACACAAGTCGGTGGC-AACCTTCTC
*
1531109 TAAAGCCCGCACAAGTCGGTGGCAACCTTCTTC
1 TAAAGCCCACACAAGTCGGTGGCAACCTTC-TC
* *
1531142 TAAAGCCTACACATGTCGGTGGCAACC-T-TC
1 TAAAGCCCACACAAGTCGGTGGCAACCTTCTC
1531172 TAAAGCCCACACAAGTCGGTGGCAACCCTTCTC
1 TAAAGCCCACACAAGTCGGTGGCAA-CCTTCTC
*
1531205 TAAAGCCCACACAAGTCGGTGCCAACC-T-TC
1 TAAAGCCCACACAAGTCGGTGGCAACCTTCTC
1531235 TAAAGCCCACACAAGTCGGTGGCAACCCTTCTC
1 TAAAGCCCACACAAGTCGGTGGCAA-CCTTCTC
1531268 TAAAGCCCACACAAGTCGGTGGCAACC-T-TC
1 TAAAGCCCACACAAGTCGGTGGCAACCTTCTC
1531298 TAAAGCCCACACAAGTCGGTGGCAACCCTTCTC
1 TAAAGCCCACACAAGTCGGTGGCAA-CCTTCTC
*
1531331 -AAAGCCCACACAAGTCGGTGGCAACCCTCTC
1 TAAAGCCCACACAAGTCGGTGGCAACCTTCTC
*
1531362 TAAAGCCCACACAAGTCGGTGGCAACCTT-TT
1 TAAAGCCCACACAAGTCGGTGGCAACCTTCTC
1531393 TCAAAGCCCACACAAGTCGGTGGCAACCTTCTTC
1 T-AAAGCCCACACAAGTCGGTGGCAACCTTC-TC
* *
1531427 TAAAGCCTACACAAGTCGGTGGCAACCCTCTC
1 TAAAGCCCACACAAGTCGGTGGCAACCTTCTC
* * *
1531459 TAAAGCCCACACAATTTGGTGACAACCATTCTC
1 TAAAGCCCACACAAGTCGGTGGCAACC-TTCTC
* *
1531492 TAAAGCCCACACAAGTCAGTGGCAACCCT-TC
1 TAAAGCCCACACAAGTCGGTGGCAACCTTCTC
1531523 T-AAGCCCA
1 TAAAGCCCA
1531531 ATATAGCTGG
Statistics
Matches: 476, Mismatches: 30, Indels: 33
0.88 0.06 0.06
Matches are distributed among these distances:
30 85 0.18
31 19 0.04
32 120 0.25
33 250 0.53
34 2 0.00
ACGTcount: A:0.29, C:0.34, G:0.18, T:0.19
Consensus pattern (32 bp):
TAAAGCCCACACAAGTCGGTGGCAACCTTCTC
Found at i:1531207 original size:63 final size:64
Alignment explanation
Indices: 1530977--1531523 Score: 811
Period size: 63 Copynumber: 8.5 Consensus size: 64
1530967 TCACCCTTTT
* *
1530977 TAAAGCCCACACAAGTCGGTGGCAAACCTTCTCTAAAGCCCACAGAAGTCGGTGGCAAACCTTCT
1 TAAAGCCCACACAAGTCGGTGGCAACCCTTCTCTAAAGCCCACACAAGTCGGTGGC-AACC-TCT
1531042 C
64 C
* * *
1531043 TAAAGCCCACACAGGTTGGTGGCAAACCTTCTCTAAAGCCCACACAAGTCGGTGGCAAACCTTCT
1 TAAAGCCCACACAAGTCGGTGGCAACCCTTCTCTAAAGCCCACACAAGTCGGTGGC-AACC-TCT
1531108 C
64 C
* * *
1531109 TAAAGCCCGCACAAGTCGGTGGCAA-CCTTCTTCTAAAGCCTACACATGTCGGTGGCAACCT-TC
1 TAAAGCCCACACAAGTCGGTGGCAACCCTTC-TCTAAAGCCCACACAAGTCGGTGGCAACCTCTC
*
1531172 TAAAGCCCACACAAGTCGGTGGCAACCCTTCTCTAAAGCCCACACAAGTCGGTGCCAACCT-TC
1 TAAAGCCCACACAAGTCGGTGGCAACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAACCTCTC
1531235 TAAAGCCCACACAAGTCGGTGGCAACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAACCT-TC
1 TAAAGCCCACACAAGTCGGTGGCAACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAACCTCTC
1531298 TAAAGCCCACACAAGTCGGTGGCAACCCTTCTC-AAAGCCCACACAAGTCGGTGGCAACCCTCTC
1 TAAAGCCCACACAAGTCGGTGGCAACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAA-CCTCTC
* *
1531362 TAAAGCCCACACAAGTCGGTGGCAACCTTTTTC-AAAGCCCACACAAGTCGGTGGCAACCTTCTT
1 TAAAGCCCACACAAGTCGGTGGCAACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAACC-TC-T
1531426 C
64 C
* * * *
1531427 TAAAGCCTACACAAGTCGGTGGCAACCC-TCTCTAAAGCCCACACAATTTGGTGACAACCATTCT
1 TAAAGCCCACACAAGTCGGTGGCAACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAACC--TCT
1531491 C
64 C
*
1531492 TAAAGCCCACACAAGTCAGTGGCAACCCTTCT
1 TAAAGCCCACACAAGTCGGTGGCAACCCTTCT
1531524 AAGCCCAATA
Statistics
Matches: 449, Mismatches: 23, Indels: 18
0.92 0.05 0.04
Matches are distributed among these distances:
62 24 0.05
63 155 0.35
64 68 0.15
65 88 0.20
66 114 0.25
ACGTcount: A:0.29, C:0.34, G:0.18, T:0.19
Consensus pattern (64 bp):
TAAAGCCCACACAAGTCGGTGGCAACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAACCTCTC
Done.