Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2747
Parameters: 2 7 7 80 10 50 1000
Length:  50913

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
275--301
5
5.4
5
100
0
54
81
0
0
18
0.69
1769--2349
156
3.7
157
75
10
413
38
20
17
23
1.93
1765--2227
156
3.0
155
79
6
472
39
20
17
22
1.92
4735--4768
15
2.3
15
95
5
61
73
0
2
23
0.97
7924--8283
159
2.3
157
84
7
458
32
14
26
26
1.94
8241--8313
27
2.7
27
85
6
85
27
19
30
23
1.98
7891--8284
79
4.9
79
76
4
346
33
13
25
27
1.93
8264--8316
27
2.0
27
100
0
106
22
18
33
24
1.97
8298--8415
51
2.4
49
82
13
145
33
11
24
30
1.91
10755--10780
13
2.0
13
100
0
52
38
15
15
30
1.88
10734--10800
33
2.0
33
85
0
89
44
16
13
25
1.84
10820--10887
19
3.9
18
76
23
83
38
14
11
35
1.83
10842--10866
13
1.9
13
100
0
50
32
16
16
36
1.90
10823--10885
32
2.0
32
96
0
117
36
15
12
34
1.86
14387--14462
32
2.4
32
100
0
152
26
21
21
31
1.98
14471--14495
13
1.9
13
100
0
50
36
16
16
32
1.90
14540--14593
20
2.7
20
85
0
72
44
12
11
31
1.78
15060--15271
119
1.8
116
82
9
277
40
15
25
19
1.90
15255--16017
55
13.3
59
86
6
911
24
20
28
26
1.99
15255--16017
174
4.4
174
86
5
979
24
20
28
26
1.99
19214--19332
52
2.3
51
94
1
202
30
17
17
34
1.93
19341--19365
13
1.9
13
100
0
50
36
16
16
32
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19428--19452
13
1.9
13
100
0
50
32
16
16
36
1.90
20342--20553
52
4.2
52
76
15
203
33
16
25
25
1.96
20449--20538
43
2.1
43
91
0
144
30
17
25
26
1.98
20544--21013
57
8.0
59
75
10
342
24
17
28
28
1.97
20579--20800
88
2.6
87
93
3
376
20
18
27
33
1.96
20542--21013
30
16.1
30
78
9
377
25
17
29
28
1.97
22451--22564
1
114.0
1
74
0
66
1
4
9
84
0.83
22451--22563
17
6.9
15
75
21
95
1
4
9
84
0.84
22451--22528
33
2.4
31
78
17
95
1
2
10
85
0.74
22453--22563
40
2.7
42
81
13
124
1
4
9
83
0.85
22451--22565
20
5.7
20
79
11
110
1
4
10
83
0.86
46535--46654
1
120.0
1
88
0
177
94
4
0
0
0.39
46535--46654
49
2.4
50
92
1
197
94
4
0
0
0.39
46535--46654
58
2.0
58
91
4
195
94
4
0
0
0.39
48091--48554
29
16.0
28
78
10
355
29
29
17
24
1.97
48560--48647
43
2.0
43
91
0
140
27
25
18
29
1.98
48601--48737
52
2.6
53
82
4
161
24
24
16
34
1.96
49574--49598
13
1.9
13
100
0
50
36
16
16
32
1.90
49660--49684
12
2.1
12
100
0
50
36
16
16
32
1.90
49672--49873
52
3.9
51
89
7
300
34
19
17
28
1.95

Tables:   1

The End!