Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold275
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1025155
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 499 characters in sequence are not A, C, G, or T
File 3 of 7
Found at i:310994 original size:15 final size:16
Alignment explanation
Indices: 310974--311011 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
310964 TAAATTTATA
*
310974 TATTTATATTAT-TTT
1 TATTTATATAATATTT
310989 TATTTATATAATATTT
1 TATTTATATAATATTT
*
311005 TAATTAT
1 TATTTAT
311012 TTTTTTCATG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 11 0.55
16 9 0.45
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (16 bp):
TATTTATATAATATTT
Found at i:312111 original size:21 final size:21
Alignment explanation
Indices: 312061--312125 Score: 53
Period size: 21 Copynumber: 3.0 Consensus size: 21
312051 TTATTTTGGC
*
312061 AAAGAGAAAAAAAGAAGAGAAAG
1 AAAG-GAAAAAAA-TAGAGAAAG
* *
312084 AGA-GAAAAAAATAGGGAAAG
1 AAAGGAAAAAAATAGAGAAAG
*
312104 AAAGGAAAAGAATA-AGCAAAG
1 AAAGGAAAAAAATAGAG-AAAG
312125 A
1 A
312126 GAAAAAATAA
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
20 10 0.29
21 22 0.65
23 2 0.06
ACGTcount: A:0.69, C:0.02, G:0.26, T:0.03
Consensus pattern (21 bp):
AAAGGAAAAAAATAGAGAAAG
Found at i:317324 original size:14 final size:16
Alignment explanation
Indices: 317291--317327 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
317281 TAGATATATT
*
317291 ATATATATATAATAAG
1 ATATAAATATAATAAG
317307 ATATAAATATAA-AA-
1 ATATAAATATAATAAG
317321 ATATAAA
1 ATATAAA
317328 AAAAATTAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 2 0.10
16 11 0.55
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (16 bp):
ATATAAATATAATAAG
Found at i:318468 original size:33 final size:34
Alignment explanation
Indices: 318399--318469 Score: 92
Period size: 33 Copynumber: 2.1 Consensus size: 34
318389 ATATCTAAGA
**
318399 TAATTTTATTATATTTAAATAAATTTTTAATTTT
1 TAATTTTATTATATTTAAATAAATTTTTAACCTT
*
318433 TAATTTT-TTAT-TTATAATTAAATTTTTAACCTT
1 TAATTTTATTATATT-TAAATAAATTTTTAACCTT
318466 TAAT
1 TAAT
318470 ATGAATAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
32 2 0.06
33 24 0.73
34 7 0.21
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.61
Consensus pattern (34 bp):
TAATTTTATTATATTTAAATAAATTTTTAACCTT
Found at i:326271 original size:2 final size:2
Alignment explanation
Indices: 326264--326301 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
326254 TATTTGTACC
326264 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
326302 GTATGTATGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:329154 original size:2 final size:2
Alignment explanation
Indices: 329147--329206 Score: 120
Period size: 2 Copynumber: 30.0 Consensus size: 2
329137 TTATCAACCT
329147 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
329189 GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA
329207 ATTAGGTATT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 58 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:337958 original size:2 final size:2
Alignment explanation
Indices: 337951--337977 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
337941 TGATAAATTA
337951 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
337978 CACATTGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:338624 original size:11 final size:11
Alignment explanation
Indices: 338610--338693 Score: 56
Period size: 10 Copynumber: 8.1 Consensus size: 11
338600 TATTAAAGTA
338610 ATATATATTTT
1 ATATATATTTT
*
338621 ATATAAATTTT
1 ATATATATTTT
* *
338632 -GATATATTTA
1 ATATATATTTT
*
338642 ATA-ATTAATATT
1 ATATA-T-ATTTT
*
338654 ATATA-AATTT
1 ATATATATTTT
338664 A-ATATATTTT
1 ATATATATTTT
338674 -TATAT-TTTT
1 ATATATATTTT
338683 AT-TATATTTT
1 ATATATATTTT
338693 A
1 A
338694 ATTAATTTTT
Statistics
Matches: 55, Mismatches: 10, Indels: 17
0.67 0.12 0.21
Matches are distributed among these distances:
9 10 0.18
10 26 0.47
11 12 0.22
12 6 0.11
13 1 0.02
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.58
Consensus pattern (11 bp):
ATATATATTTT
Found at i:339617 original size:2 final size:2
Alignment explanation
Indices: 339601--339649 Score: 64
Period size: 2 Copynumber: 25.0 Consensus size: 2
339591 TTAGCAATAC
* * *
339601 AT AT AT AC AT TT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
339643 AT A- AT AT
1 AT AT AT AT
339650 GTGGGTTAGC
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
1 1 0.03
2 39 0.98
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:340007 original size:32 final size:34
Alignment explanation
Indices: 339946--340012 Score: 104
Period size: 32 Copynumber: 2.0 Consensus size: 34
339936 TATCATAATC
339946 ATATTTAATATATTATATATTTATATAAATTTTG
1 ATATTTAATATATTATATATTTATATAAATTTTG
339980 ATATATTAATA-ATT-TATA-TTATATAAATTTTG
1 ATAT-TTAATATATTATATATTTATATAAATTTTG
340012 A
1 A
340013 CACGTTTTGA
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
32 15 0.47
33 4 0.12
34 7 0.22
35 6 0.19
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (34 bp):
ATATTTAATATATTATATATTTATATAAATTTTG
Found at i:341846 original size:53 final size:53
Alignment explanation
Indices: 341788--341895 Score: 207
Period size: 53 Copynumber: 2.0 Consensus size: 53
341778 ATAGTATATT
*
341788 AATAAATTAAAATATTTATATGCTTTGGTATTAAAAACTTCATAATTGTATAG
1 AATAAATTAAAATATTTATATGCTTTGGTACTAAAAACTTCATAATTGTATAG
341841 AATAAATTAAAATATTTATATGCTTTGGTACTAAAAACTTCATAATTGTATAG
1 AATAAATTAAAATATTTATATGCTTTGGTACTAAAAACTTCATAATTGTATAG
341894 AA
1 AA
341896 AATAACTTGA
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 54 1.00
ACGTcount: A:0.44, C:0.06, G:0.09, T:0.40
Consensus pattern (53 bp):
AATAAATTAAAATATTTATATGCTTTGGTACTAAAAACTTCATAATTGTATAG
Found at i:342858 original size:82 final size:81
Alignment explanation
Indices: 342726--342876 Score: 205
Period size: 82 Copynumber: 1.8 Consensus size: 81
342716 TCCCCACAAT
*
342726 TATATATATATATATTGTATAATCCAAATGTCGAAAAACGCCTGCATCACCGGCGAAGACTTCGG
1 TATACATATATATATTGTATAATCCAAATGTC-AAAAACGCCTGCATCACCGGCGAAGACTTCGG
342791 TACATACAATACATATA
65 TACATACAATACATATA
* * * * **
342808 TATACATATATATCTTGTGTATTCCAAATGTC-AAAATGCCTCGGCATCACCGTTGAAGACTTCG
1 TATACATATATATATTGTATAATCCAAATGTCAAAAACGCCT--GCATCACCGGCGAAGACTTCG
342872 GTACA
64 GTACA
342877 AACAGTAATA
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
80 8 0.13
82 52 0.87
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.30
Consensus pattern (81 bp):
TATACATATATATATTGTATAATCCAAATGTCAAAAACGCCTGCATCACCGGCGAAGACTTCGGT
ACATACAATACATATA
Found at i:346541 original size:20 final size:20
Alignment explanation
Indices: 346512--346549 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
346502 GTAAAAAGAC
* *
346512 AGAATGTATCGATACATTGA
1 AGAATATATCAATACATTGA
346532 AGAATATATCAATACATT
1 AGAATATATCAATACATT
346550 CATACAAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.11, G:0.13, T:0.32
Consensus pattern (20 bp):
AGAATATATCAATACATTGA
Found at i:346632 original size:20 final size:20
Alignment explanation
Indices: 346588--346658 Score: 78
Period size: 20 Copynumber: 3.8 Consensus size: 20
346578 AAAAAGATAG
* *
346588 AATGTATCGATACATTCATA
1 AATGTATCGATACATTGAAA
*
346608 CATGTATCGATACATTGAAA
1 AATGTATCGATACATTGAAA
*
346628 AATG--T--ATACATCGAAA
1 AATGTATCGATACATTGAAA
346644 AATGTATCGATACAT
1 AATGTATCGATACAT
346659 CTGGGTAAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
16 14 0.33
18 2 0.05
20 26 0.62
ACGTcount: A:0.42, C:0.14, G:0.13, T:0.31
Consensus pattern (20 bp):
AATGTATCGATACATTGAAA
Found at i:346638 original size:16 final size:16
Alignment explanation
Indices: 346617--346650 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
346607 ACATGTATCG
*
346617 ATACATTGAAAAATGT
1 ATACATCGAAAAATGT
346633 ATACATCGAAAAATGT
1 ATACATCGAAAAATGT
346649 AT
1 AT
346651 CGATACATCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.50, C:0.09, G:0.12, T:0.29
Consensus pattern (16 bp):
ATACATCGAAAAATGT
Found at i:348020 original size:28 final size:28
Alignment explanation
Indices: 347545--348014 Score: 510
Period size: 28 Copynumber: 16.5 Consensus size: 28
347535 CACTAACTTG
* **
347545 TGTGGGCTTTGAAAAGAGTTGCCACCAACTT
1 TGTGGGCTTTG-AAAG-GATGCCACTGAC-T
* * * *
347576 GTGTGGGCTTAGAAAGGGTGTCATTGACT
1 -TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
347605 TGTGGGCTTTGAAGGGGTACCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
347633 TGTGGGCTTTAAAAGGGTGCTACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
347661 TGTGGGCTTTGAAAGGGTGCCACTGATTT
1 TGTGGGCTTTGAAAGGATGCCACTGA-CT
*
347690 GTGTGGGCTTTGAAAGGGTATGCCACTGATT
1 -TGTGGGCTTTGAAA-GG-ATGCCACTGACT
* *
347721 TGTGGGCCTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
347749 TGTGGGCTTTAAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
347777 TGTGGTCTTTTG-AAGAGATACCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
* * * *
347806 TGTGGGTTTTGAAAGGGTGCTATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
347834 TGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
**
347862 TGTGGTTTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
347890 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
347918 TGTGGGCTTTAAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
347946 TGTGAGCTTTGAAAGAATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
347974 TGTAGGCTTTGAAAGGATGCCATTGACC
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
348002 TATGGGCTTTGAA
1 TGTGGGCTTTGAA
348015 GAGATGAACA
Statistics
Matches: 374, Mismatches: 57, Indels: 18
0.83 0.13 0.04
Matches are distributed among these distances:
28 287 0.77
29 26 0.07
30 34 0.09
31 8 0.02
32 19 0.05
ACGTcount: A:0.22, C:0.16, G:0.31, T:0.31
Consensus pattern (28 bp):
TGTGGGCTTTGAAAGGATGCCACTGACT
Found at i:353372 original size:13 final size:13
Alignment explanation
Indices: 353354--353379 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
353344 CATGTTTTTG
353354 TGTATCGATACAT
1 TGTATCGATACAT
353367 TGTATCGATACAT
1 TGTATCGATACAT
353380 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:353391 original size:32 final size:33
Alignment explanation
Indices: 353334--353397 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
353324 TACAAGCCAA
**
353334 TGTATCGATACATGTTTTTGTGTATCGATACAT
1 TGTATCGATACATGACTTTGTGTATCGATACAT
353367 TGTATCGATACAT-ACTTTGTGTATCGATACA
1 TGTATCGATACATGACTTTGTGTATCGATACA
353398 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 16 0.55
33 13 0.45
ACGTcount: A:0.27, C:0.14, G:0.17, T:0.42
Consensus pattern (33 bp):
TGTATCGATACATGACTTTGTGTATCGATACAT
Found at i:355793 original size:21 final size:20
Alignment explanation
Indices: 355747--355793 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
355737 TTTGGAACTG
*
355747 ATTTTGATGAAAAACGATGT
1 ATTTTGATGAAAAACGAAGT
*
355767 AATTTGAAGTGAAAAAC-AAGT
1 ATTTTG-A-TGAAAAACGAAGT
355788 ATTTTG
1 ATTTTG
355794 CAAAAGATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.43, C:0.04, G:0.19, T:0.34
Consensus pattern (20 bp):
ATTTTGATGAAAAACGAAGT
Found at i:355933 original size:13 final size:13
Alignment explanation
Indices: 355915--355953 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
355905 ATAATCCCCC
*
355915 TGTATCGATACAG
1 TGTATCGATACAA
355928 TGTATCGATACAA
1 TGTATCGATACAA
355941 TGTATCGATACAA
1 TGTATCGATACAA
355954 AGAATGATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:362133 original size:13 final size:13
Alignment explanation
Indices: 362115--362140 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
362105 CATATTTTTG
362115 TGTATCGATACAT
1 TGTATCGATACAT
362128 TGTATCGATACAT
1 TGTATCGATACAT
362141 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:362152 original size:32 final size:33
Alignment explanation
Indices: 362095--362158 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 33
362085 TACAAGCCAA
*
362095 TGTATCGATACATATTTTTGTGTATCGATACAT
1 TGTATCGATACATATCTTTGTGTATCGATACAT
362128 TGTATCGATACATA-CTTTGTGTATCGATACA
1 TGTATCGATACATATCTTTGTGTATCGATACA
362159 AGTTTGGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 16 0.53
33 14 0.47
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (33 bp):
TGTATCGATACATATCTTTGTGTATCGATACAT
Found at i:363654 original size:34 final size:34
Alignment explanation
Indices: 363611--363732 Score: 172
Period size: 34 Copynumber: 3.6 Consensus size: 34
363601 ACAAATTTGA
363611 ACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCC
1 ACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCC
363645 ACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCC
1 ACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCC
* * * * *
363679 ATAACTTCGTGGCACATTTTTCTTTTTAAAGTCC
1 ACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCC
* * *
363713 ACAAGTCAGTGGCATCTTTT
1 ACAACTCCGTGGCACCTTTT
363733 CCAAAGCCCA
Statistics
Matches: 77, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 77 1.00
ACGTcount: A:0.22, C:0.29, G:0.13, T:0.36
Consensus pattern (34 bp):
ACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCC
Found at i:363764 original size:30 final size:29
Alignment explanation
Indices: 363706--363936 Score: 230
Period size: 29 Copynumber: 7.7 Consensus size: 29
363696 TTTTCTTTTT
*
363706 AAAGTCCACAAGTCAGTGGCATCTTTTCC
1 AAAGCCCACAAGTCAGTGGCATCTTTTCC
* * *
363735 AAAGCCCAGAAGTTAGTGGCACCCTTTTCC
1 AAAGCCCACAAGTCAGTGGCA-TCTTTTCC
363765 AAAGCCCACAAGTCAGTGGCATCTTTTCC
1 AAAGCCCACAAGTCAGTGGCATCTTTTCC
*
363794 AAAGCCCACAAGTCAGTGGCACCCTTTTCC
1 AAAGCCCACAAGTCAGTGGCA-TCTTTTCC
* * *
363824 AAAGCTCACAAGTTAGAGGCATCTTTTCC
1 AAAGCCCACAAGTCAGTGGCATCTTTTCC
*** *
363853 AAAGCCCACACCCCCGTGGCATCCCTTTTTCC
1 AAAGCCCACAAGTCAGTGGCAT--C-TTTTCC
* * * *
363885 TGTAATCCCACAAGTCGGTGGCACCTCTTT-C
1 --AAAGCCCACAAGTCAGTGGCATCT-TTTCC
*
363916 AAAGCCCACAAGTTAGTGGCA
1 AAAGCCCACAAGTCAGTGGCA
363937 ACCTTCAAAA
Statistics
Matches: 164, Mismatches: 30, Indels: 16
0.78 0.14 0.08
Matches are distributed among these distances:
29 85 0.52
30 51 0.31
31 3 0.02
32 10 0.06
34 15 0.09
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (29 bp):
AAAGCCCACAAGTCAGTGGCATCTTTTCC
Found at i:363790 original size:59 final size:59
Alignment explanation
Indices: 363706--363941 Score: 276
Period size: 59 Copynumber: 3.9 Consensus size: 59
363696 TTTTCTTTTT
* * *
363706 AAAGTCCACAAGTCAGTGGCATCTTTTCCAAAGCCCAGAAGTTAGTGGCACCCTTTTCC
1 AAAGCCCACAAGTCAGTGGCATCTTTTCCAAAGCCCACAAGTCAGTGGCACCCTTTTCC
363765 AAAGCCCACAAGTCAGTGGCATCTTTTCCAAAGCCCACAAGTCAGTGGCACCCTTTTCC
1 AAAGCCCACAAGTCAGTGGCATCTTTTCCAAAGCCCACAAGTCAGTGGCACCCTTTTCC
* * * *** *
363824 AAAGCTCACAAGTTAGAGGCATCTTTTCCAAAGCCCACACCCCCGTGGCATCCCTTTTTCC
1 AAAGCCCACAAGTCAGTGGCATCTTTTCCAAAGCCCACAAGTCAGTGGCA-CCC-TTTTCC
* * * * * *
363885 TGTAATCCCACAAGTCGGTGGCACCTCTTT-CAAAGCCCACAAGTTAGTGGCAACCTT
1 --AAAGCCCACAAGTCAGTGGCATCT-TTTCCAAAGCCCACAAGTCAGTGGCACCCTT
363942 CAAAAGTACA
Statistics
Matches: 149, Mismatches: 23, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
59 99 0.66
60 3 0.02
61 8 0.05
62 2 0.01
63 34 0.23
64 3 0.02
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.24
Consensus pattern (59 bp):
AAAGCCCACAAGTCAGTGGCATCTTTTCCAAAGCCCACAAGTCAGTGGCACCCTTTTCC
Found at i:363956 original size:28 final size:31
Alignment explanation
Indices: 363893--363994 Score: 110
Period size: 29 Copynumber: 3.5 Consensus size: 31
363883 CCTGTAATCC
*
363893 CACAAGTCGGTGGC-ACCTCTTTC-AAAGCC-
1 CACAAGTTGGTGGCAACC-CTTTCAAAAGCCA
* *
363922 CACAAGTTAGTGGCAA-CC-TTCAAAAG-TA
1 CACAAGTTGGTGGCAACCCTTTCAAAAGCCA
363950 CACAAGTTGGT-GCAACCCTTTCAAAAGCCCA
1 CACAAGTTGGTGGCAACCCTTTCAAAAG-CCA
363981 CACAAGTTGGTGGC
1 CACAAGTTGGTGGC
363995 GTCTTCTTCT
Statistics
Matches: 60, Mismatches: 5, Indels: 13
0.77 0.06 0.17
Matches are distributed among these distances:
27 7 0.12
28 17 0.28
29 21 0.35
30 1 0.02
31 12 0.20
32 2 0.03
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (31 bp):
CACAAGTTGGTGGCAACCCTTTCAAAAGCCA
Found at i:364169 original size:52 final size:52
Alignment explanation
Indices: 363999--364169 Score: 219
Period size: 49 Copynumber: 3.4 Consensus size: 52
363989 GGTGGCGTCT
363999 TCTTCTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTG---
1 TCTT-TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCA
* * * * * *
364049 GCTTTAAGACCAATGTCGCTAGTCTTGAATCAGCACATTGGCACC--T-TCA
1 TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCA
*
364098 TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCA
1 TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCA
*
364150 TCTTTAAGTCCAATGTCGCT
1 TCTTTAAGTCCAATATCGCT
364170 TCTTCATCTT
Statistics
Matches: 101, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
47 1 0.01
49 74 0.73
50 3 0.03
51 1 0.01
52 22 0.22
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.33
Consensus pattern (52 bp):
TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCA
Found at i:364230 original size:78 final size:78
Alignment explanation
Indices: 364093--364247 Score: 184
Period size: 78 Copynumber: 2.0 Consensus size: 78
364083 ACATTGGCAC
* * * * ****
364093 CTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAG
1 CTTCATCTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATCGGCACCTCAACCATCTTTAAG
* *
364158 TCCAATGTCGCTT
66 CCCAATATCGCTT
* * * *
364171 CTTCATCTTTAAGACCAATGTCGTTGGCCTTGAATCAGTACATCGGCACCTCAACCATCTTTACG
1 CTTCATCTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATCGGCACCTCAACCATCTTTAAG
364236 CCCAATATCGCT
66 CCCAATATCGCT
364248 GGCCTTGAAT
Statistics
Matches: 63, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
78 63 1.00
ACGTcount: A:0.23, C:0.28, G:0.15, T:0.34
Consensus pattern (78 bp):
CTTCATCTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATCGGCACCTCAACCATCTTTAAG
CCCAATATCGCTT
Found at i:364992 original size:13 final size:13
Alignment explanation
Indices: 364974--365031 Score: 53
Period size: 13 Copynumber: 4.0 Consensus size: 13
364964 TTCAACAATT
364974 TGTATCGATACAA
1 TGTATCGATACAA
364987 TGTATCGATACATAA
1 TGTATCGATAC--AA
365002 GTGTTGTATCGATACAA
1 ----TGTATCGATACAA
*
365019 TGTATCGCTACAA
1 TGTATCGATACAA
365032 AGCTACTGCC
Statistics
Matches: 38, Mismatches: 1, Indels: 12
0.75 0.02 0.24
Matches are distributed among these distances:
13 23 0.61
15 2 0.05
17 2 0.05
19 11 0.29
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:365087 original size:13 final size:13
Alignment explanation
Indices: 365069--365093 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
365059 CATTATTCCA
365069 TGTATCGATACAT
1 TGTATCGATACAT
365082 TGTATCGATACA
1 TGTATCGATACA
365094 CAGATTTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:378353 original size:51 final size:50
Alignment explanation
Indices: 378223--378358 Score: 139
Period size: 51 Copynumber: 2.7 Consensus size: 50
378213 TTTTAACTAG
* * * * *
378223 ATGTATTGATACATTATTCAATGTATCGATACATTTGGATGAAAAGATAGA
1 ATGTATCGATACATTATAC-ATGTATCGATACATCTGGATAAAAAGACAGA
* * * *
378274 ATGCATCGATACATTGA-AGAACGTATCGATACATCTGGGTAAAAAGACAGA
1 ATGTATCGATACATT-ATA-CATGTATCGATACATCTGGATAAAAAGACAGA
*
378325 ATGTATCGATACATTCATACATGCATCGATACAT
1 ATGTATCGATACATT-ATACATGTATCGATACAT
378359 TGAAAAATGT
Statistics
Matches: 68, Mismatches: 14, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
51 66 0.97
52 2 0.03
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (50 bp):
ATGTATCGATACATTATACATGTATCGATACATCTGGATAAAAAGACAGA
Found at i:378372 original size:20 final size:20
Alignment explanation
Indices: 378324--378375 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
378314 AAAAAGACAG
*
378324 AATGTATCGATACATTCATA
1 AATGTATCGATACATTCAAA
* * *
378344 CATGCATCGATACATTGAAA
1 AATGTATCGATACATTCAAA
378364 AATGTATCGATA
1 AATGTATCGATA
378376 TATTTGGGTA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.40, C:0.15, G:0.13, T:0.31
Consensus pattern (20 bp):
AATGTATCGATACATTCAAA
Found at i:379642 original size:25 final size:25
Alignment explanation
Indices: 379613--379665 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
379603 ATCAAAGACT
379613 AGTAAAATATATTAAAGTTATCCCA
1 AGTAAAATATATTAAAGTTATCCCA
379638 AGTAAAATATATTAAAGTTATCCCA
1 AGTAAAATATATTAAAGTTATCCCA
379663 AGT
1 AGT
379666 TGAATCAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.47, C:0.11, G:0.09, T:0.32
Consensus pattern (25 bp):
AGTAAAATATATTAAAGTTATCCCA
Found at i:380140 original size:21 final size:21
Alignment explanation
Indices: 380115--380164 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
380105 TCGTAAAATT
*
380115 TTTTTTAATAAGGTTATATTA
1 TTTTTTAATAAGGTGATATTA
*
380136 TTTTTTAATAAGGTGATATTG
1 TTTTTTAATAAGGTGATATTA
380157 TTTTTTAA
1 TTTTTTAA
380165 AAAATTATTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.30, C:0.00, G:0.12, T:0.58
Consensus pattern (21 bp):
TTTTTTAATAAGGTGATATTA
Found at i:380681 original size:21 final size:22
Alignment explanation
Indices: 380656--380696 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
380646 AAGCAAATTT
*
380656 ATAA-TATTAATTTATTAAAAA
1 ATAATTATTAATTTAATAAAAA
*
380677 ATAATTTTTAATTTAATAAA
1 ATAATTATTAATTTAATAAA
380697 TTTATCACAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (22 bp):
ATAATTATTAATTTAATAAAAA
Found at i:381855 original size:2 final size:2
Alignment explanation
Indices: 381848--381880 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
381838 CTTGAGCATG
381848 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
381881 GTTGGTATCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:381947 original size:18 final size:19
Alignment explanation
Indices: 381919--381955 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
381909 AACTTGGTAT
*
381919 ATTATTATATTTATAAATA
1 ATTATTATATTTAAAAATA
381938 ATTA-TATATTTAAAAATA
1 ATTATTATATTTAAAAATA
381956 TTAAAATATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
ATTATTATATTTAAAAATA
Found at i:384234 original size:31 final size:31
Alignment explanation
Indices: 384199--384274 Score: 75
Period size: 31 Copynumber: 2.5 Consensus size: 31
384189 TTTTTAGTTT
* *
384199 TAAATAT-ATATTTTATTATTTAATATAAATA
1 TAAATATAATAATTTA-TATTAAATATAAATA
* *
384230 TAAATTTAATAATTTATCTTAAATATAAATA
1 TAAATATAATAATTTATATTAAATATAAATA
* *
384261 TGAA-GTAATAATTT
1 TAAATATAATAATTT
384275 TTAATTATTA
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
30 9 0.24
31 22 0.58
32 7 0.18
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.47
Consensus pattern (31 bp):
TAAATATAATAATTTATATTAAATATAAATA
Found at i:384252 original size:25 final size:25
Alignment explanation
Indices: 384197--384259 Score: 74
Period size: 25 Copynumber: 2.5 Consensus size: 25
384187 AATTTTTAGT
* * *
384197 TTTAAATATATATTTTATTATTTAA
1 TTTAAATATAAATTTAATAATTTAA
*
384222 TATAAATATAAATTTAATAATTT-A
1 TTTAAATATAAATTTAATAATTTAA
384246 TCTTAAATATAAAT
1 T-TTAAATATAAAT
384260 ATGAAGTAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
24 2 0.06
25 30 0.94
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.51
Consensus pattern (25 bp):
TTTAAATATAAATTTAATAATTTAA
Found at i:384330 original size:35 final size:35
Alignment explanation
Indices: 384253--384363 Score: 93
Period size: 35 Copynumber: 3.1 Consensus size: 35
384243 TTATCTTAAA
*
384253 TATAAATATGAA--GTAATAATTTTTAATTAT-TAT
1 TATAAATAT-AATTGTAATAATATTTAATTATATAT
* * * *
384286 TCAACATAAATATAATTTTATTTATATTTAATTATTTAT
1 T----ATAAATATAATTGTAATAATATTTAATTATATAT
* *
384325 TATAAATATACTTGTAATAATCTTTAATTATATAT
1 TATAAATATAATTGTAATAATATTTAATTATATAT
384360 TATA
1 TATA
384364 TATGTACACC
Statistics
Matches: 61, Mismatches: 10, Indels: 12
0.73 0.12 0.14
Matches are distributed among these distances:
33 1 0.02
35 32 0.52
36 2 0.03
37 8 0.13
38 14 0.23
39 4 0.07
ACGTcount: A:0.43, C:0.04, G:0.03, T:0.50
Consensus pattern (35 bp):
TATAAATATAATTGTAATAATATTTAATTATATAT
Found at i:384644 original size:2 final size:2
Alignment explanation
Indices: 384601--384631 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
384591 TGCTGAAATG
384601 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
384632 CATGCATATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:391745 original size:24 final size:23
Alignment explanation
Indices: 391701--391745 Score: 54
Period size: 24 Copynumber: 1.9 Consensus size: 23
391691 TTCTTTTGCC
* *
391701 TAAATAATTATTGTAAAAAAAAT
1 TAAATAAATATTGCAAAAAAAAT
*
391724 TAAATACAATATTGCAATAAAA
1 TAAATA-AATATTGCAAAAAAA
391746 TGAATGGTAT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 6 0.33
24 12 0.67
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.31
Consensus pattern (23 bp):
TAAATAAATATTGCAAAAAAAAT
Found at i:392135 original size:18 final size:18
Alignment explanation
Indices: 392114--392151 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
392104 TAATAACCTA
*
392114 ATAATTA-ATTATAATAAT
1 ATAATTATA-TATAACAAT
392132 ATAATTATATATAACAAT
1 ATAATTATATATAACAAT
392150 AT
1 AT
392152 TGATTTTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 17 0.94
19 1 0.06
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (18 bp):
ATAATTATATATAACAAT
Found at i:395642 original size:22 final size:23
Alignment explanation
Indices: 395600--395643 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
395590 CCTTTTTGAA
*
395600 AAAGTCTTGATAATAGCATGTCC
1 AAAGTCTTGAGAATAGCATGTCC
395623 AAAGT-TTGAGAAGTAG-ATGTC
1 AAAGTCTTGAGAA-TAGCATGTC
395644 TTACTATCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.36, C:0.11, G:0.23, T:0.30
Consensus pattern (23 bp):
AAAGTCTTGAGAATAGCATGTCC
Found at i:396531 original size:17 final size:17
Alignment explanation
Indices: 396483--396535 Score: 72
Period size: 17 Copynumber: 3.2 Consensus size: 17
396473 ACATTAATGT
396483 ATGTTTATAGTTCATGA
1 ATGTTTATAGTTCATGA
* *
396500 ATATTTA-AATTCATGA
1 ATGTTTATAGTTCATGA
*
396516 ATGTTCATAGTTCATGA
1 ATGTTTATAGTTCATGA
396533 ATG
1 ATG
396536 CACGTAATAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
16 13 0.43
17 17 0.57
ACGTcount: A:0.34, C:0.08, G:0.15, T:0.43
Consensus pattern (17 bp):
ATGTTTATAGTTCATGA
Found at i:406037 original size:14 final size:13
Alignment explanation
Indices: 406004--406064 Score: 54
Period size: 14 Copynumber: 4.5 Consensus size: 13
405994 AAATTTTATC
406004 TTAATTTTTA-AA
1 TTAATTTTTATAA
406016 TTTTAATTTTTATAA
1 --TTAATTTTTATAA
*
406031 TTAAATTCTTT-TTA
1 TT-AATT-TTTATAA
406045 TTAATTTTTATAA
1 TTAATTTTTATAA
406058 TATAATT
1 T-TAATT
406065 ATATGAACTA
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
12 3 0.08
13 9 0.22
14 23 0.57
15 5 0.12
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (13 bp):
TTAATTTTTATAA
Found at i:406201 original size:25 final size:25
Alignment explanation
Indices: 406146--406195 Score: 68
Period size: 23 Copynumber: 2.0 Consensus size: 25
406136 ATCAATTAAA
406146 TAAAAAGCAAAAAGGTTAAGAAAAAG
1 TAAAAAGCAAAAAGG-TAAGAAAAAG
*
406172 TAAAAAG-AAAAAGG-AATAAAAAG
1 TAAAAAGCAAAAAGGTAAGAAAAAG
406195 T
1 T
406196 GGAAAATGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 9 0.39
25 7 0.30
26 7 0.30
ACGTcount: A:0.68, C:0.02, G:0.18, T:0.12
Consensus pattern (25 bp):
TAAAAAGCAAAAAGGTAAGAAAAAG
Found at i:406351 original size:20 final size:18
Alignment explanation
Indices: 406313--406369 Score: 62
Period size: 19 Copynumber: 3.0 Consensus size: 18
406303 TGGGAGAGTG
406313 AAGGAAAAATAA-AAAAAA
1 AAGGAAAAA-AAGAAAAAA
406331 AAGGGAAAAAAAGAAAGAAA
1 AA-GGAAAAAAAGAAA-AAA
*
406351 AAAGAGAAAAAAGAAAAAA
1 AAGGA-AAAAAAGAAAAAA
406370 CTAAGAAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
18 4 0.12
19 15 0.44
20 15 0.44
ACGTcount: A:0.81, C:0.00, G:0.18, T:0.02
Consensus pattern (18 bp):
AAGGAAAAAAAGAAAAAA
Found at i:406351 original size:21 final size:20
Alignment explanation
Indices: 406317--406369 Score: 70
Period size: 21 Copynumber: 2.6 Consensus size: 20
406307 AGAGTGAAGG
* *
406317 AAAAATAAAAAAAAAAGGGAA
1 AAAAAGAAAAAAAAAAGAG-A
*
406338 AAAAAGAAAGAAAAAAGAGA
1 AAAAAGAAAAAAAAAAGAGA
406358 AAAAAGAAAAAA
1 AAAAAGAAAAAA
406370 CTAAGAAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 12 0.43
21 16 0.57
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (20 bp):
AAAAAGAAAAAAAAAAGAGA
Found at i:406375 original size:20 final size:19
Alignment explanation
Indices: 406335--406379 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
406325 AAAAAAAAGG
406335 GAAAAAAAGAAAGAAAAAA
1 GAAAAAAAGAAAGAAAAAA
*
406354 GAGAAAAAAGAAA-AAACTAA
1 GA-AAAAAAGAAAGAAA-AAA
406374 GAAAAA
1 GAAAAA
406380 GCTTTGTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.80, C:0.02, G:0.16, T:0.02
Consensus pattern (19 bp):
GAAAAAAAGAAAGAAAAAA
Found at i:408320 original size:18 final size:18
Alignment explanation
Indices: 408297--408338 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
408287 TTCTTAAAAT
408297 CGAGTCTTAGATTGCCAC
1 CGAGTCTTAGATTGCCAC
*
408315 CGAGTCTTAGGTTGCCAC
1 CGAGTCTTAGATTGCCAC
*
408333 TGAGTC
1 CGAGTC
408339 CACTTTTATG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.19, C:0.26, G:0.26, T:0.29
Consensus pattern (18 bp):
CGAGTCTTAGATTGCCAC
Found at i:410838 original size:16 final size:16
Alignment explanation
Indices: 410819--410860 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
410809 ATTAGATAAA
410819 ATTTTTTTATTATTTT
1 ATTTTTTTATTATTTT
*
410835 ATTTTGTTATTATTTT
1 ATTTTTTTATTATTTT
*
410851 TTATTTTTTA
1 AT-TTTTTTA
410861 ATTCTAATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
16 16 0.73
17 6 0.27
ACGTcount: A:0.19, C:0.00, G:0.02, T:0.79
Consensus pattern (16 bp):
ATTTTTTTATTATTTT
Found at i:411570 original size:24 final size:25
Alignment explanation
Indices: 411541--411597 Score: 73
Period size: 24 Copynumber: 2.4 Consensus size: 25
411531 CATATTCCTT
411541 TTTGCTCGTCC-TTTGCTACTCTCC
1 TTTGCTCGTCCATTTGCTACTCTCC
* *
411565 TTTGCTC-ACCATTTGCTGCTCTCC
1 TTTGCTCGTCCATTTGCTACTCTCC
*
411589 TTTACTCGT
1 TTTGCTCGT
411598 ATTGCTTGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
23 2 0.07
24 25 0.93
ACGTcount: A:0.07, C:0.35, G:0.12, T:0.46
Consensus pattern (25 bp):
TTTGCTCGTCCATTTGCTACTCTCC
Found at i:411826 original size:18 final size:18
Alignment explanation
Indices: 411803--411846 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
411793 CTATTACTGT
*
411803 TTCATTCCTTTGTTGCTA
1 TTCATTCCTTGGTTGCTA
* * *
411821 TTCATTGCTTGGTTGTTC
1 TTCATTCCTTGGTTGCTA
411839 TTCATTCC
1 TTCATTCC
411847 CCATTTGTGT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.09, C:0.23, G:0.14, T:0.55
Consensus pattern (18 bp):
TTCATTCCTTGGTTGCTA
Found at i:412588 original size:14 final size:14
Alignment explanation
Indices: 412536--412590 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
412526 TTTTTTGAAT
412536 TTTTTATTTCTTGA
1 TTTTTATTTCTTGA
*
412550 TTTTTATTATTATATTGAA
1 --TTT-TTATT-TCTTG-A
412569 TTTTTATTTCTTGA
1 TTTTTATTTCTTGA
412583 TTTTTATT
1 TTTTTATT
412591 ATTATATTGA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
14 9 0.26
15 4 0.12
16 8 0.24
17 8 0.24
18 4 0.12
19 1 0.03
ACGTcount: A:0.20, C:0.04, G:0.05, T:0.71
Consensus pattern (14 bp):
TTTTTATTTCTTGA
Found at i:412605 original size:15 final size:15
Alignment explanation
Indices: 412587--412642 Score: 69
Period size: 15 Copynumber: 3.6 Consensus size: 15
412577 TCTTGATTTT
412587 TATTATTATATTGAA
1 TATTATTATATTGAA
*
412602 TATTATT-TCTTGATA
1 TATTATTATATTGA-A
412617 TTTATTATTATATTGAA
1 --TATTATTATATTGAA
412634 TATTATTAT
1 TATTATTAT
412643 TTTTAATTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
14 5 0.14
15 17 0.49
17 8 0.23
18 5 0.14
ACGTcount: A:0.34, C:0.02, G:0.05, T:0.59
Consensus pattern (15 bp):
TATTATTATATTGAA
Found at i:412613 original size:32 final size:32
Alignment explanation
Indices: 412539--412640 Score: 177
Period size: 32 Copynumber: 3.2 Consensus size: 32
412529 TTTGAATTTT
*
412539 TTATTTCTTGATTTTTATTATTATATTGAATTT
1 TTATTTCTTGATTTTTATTATTATATTGAA-TA
412572 TTATTTCTTGATTTTTATTATTATATTGAATA
1 TTATTTCTTGATTTTTATTATTATATTGAATA
*
412604 TTATTTCTTGATATTTATTATTATATTGAATA
1 TTATTTCTTGATTTTTATTATTATATTGAATA
412636 TTATT
1 TTATT
412641 ATTTTTAATT
Statistics
Matches: 67, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
32 37 0.55
33 30 0.45
ACGTcount: A:0.27, C:0.03, G:0.06, T:0.64
Consensus pattern (32 bp):
TTATTTCTTGATTTTTATTATTATATTGAATA
Found at i:413199 original size:42 final size:42
Alignment explanation
Indices: 413121--413621 Score: 413
Period size: 42 Copynumber: 12.0 Consensus size: 42
413111 AAAACCAATG
* * *
413121 GGCAGACTTAGGGAAAGAAAAGTCTCCAGGGACAAAGTCGACA
1 GGCAGACTAAGGG-AAGAAAAGTCTCCAGGGTCAAAGCCGACA
** * * * *
413164 AACAGACTGAGGGAAGGAAAGTCTCCAAGGTCAAAGCCAACA
1 GGCAGACTAAGGGAAGAAAAGTCTCCAGGGTCAAAGCCGACA
* * * *
413206 GGCAAACTGAGGGAAGAAAAGTCTCCAGGGTTAAA-CCGGCA
1 GGCAGACTAAGGGAAGAAAAGTCTCCAGGGTCAAAGCCGACA
* * *
413247 GGCAAATTAAGGGATGAAAAGTCTCCAGGGTCAAAGCCGACA
1 GGCAGACTAAGGGAAGAAAAGTCTCCAGGGTCAAAGCCGACA
* ** * * *
413289 GGCAGACTGAGGGTTGAAAAGTCTCTAGGGTCAAGGCTGACA
1 GGCAGACTAAGGGAAGAAAAGTCTCCAGGGTCAAAGCCGACA
*
413331 GGCAGACTAAGGGAAGAAAAGTCTCCAGGGTCAAAGTCGACA
1 GGCAGACTAAGGGAAGAAAAGTCTCCAGGGTCAAAGCCGACA
** ** * *
413373 GGCAGACTTTAAATG-AG-GTAGTCTCCAAGGTCAAAGTCGACA
1 GGCAGAC--TAAGGGAAGAAAAGTCTCCAGGGTCAAAGCCGACA
* * *
413415 GGCAGACTAAAGGAAGGAAAGTCTCCAGGGTCAAAGCCAACA
1 GGCAGACTAAGGGAAGAAAAGTCTCCAGGGTCAAAGCCGACA
* * ** * * * * *
413457 GGCAGACTTTA--GATGAGGCAGTCTCTAAGGACGAAGCCAACA
1 GGCAGAC-TAAGGGAAGA-AAAGTCTCCAGGGTCAAAGCCGACA
* * * * *
413499 GGCAGACTGAAGGGTAGGAAAGTCT-CTGGGTCAAAGTCGATA
1 GGCAGACT-AAGGGAAGAAAAGTCTCCAGGGTCAAAGCCGACA
* * * * *
413541 AGCAGACTAAGGGATGAAAAGTCTCCAAGGTCAAAGCCAACT
1 GGCAGACTAAGGGAAGAAAAGTCTCCAGGGTCAAAGCCGACA
* * *
413583 GGCAAACTGAGGGAAGAAAAGTCTCCAGGGTTAAA-CCGA
1 GGCAGACTAAGGGAAGAAAAGTCTCCAGGGTCAAAGCCGA
413622 TGTCGTAACG
Statistics
Matches: 361, Mismatches: 86, Indels: 24
0.77 0.18 0.05
Matches are distributed among these distances:
40 5 0.01
41 57 0.16
42 274 0.76
43 19 0.05
44 6 0.02
ACGTcount: A:0.37, C:0.19, G:0.30, T:0.14
Consensus pattern (42 bp):
GGCAGACTAAGGGAAGAAAAGTCTCCAGGGTCAAAGCCGACA
Found at i:416762 original size:52 final size:52
Alignment explanation
Indices: 416684--416804 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
416674 GAAAACTTGA
416684 CTGCATGTATCGATACATTTCATAGTGTATCAATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTCATAGTGTATCAATACATCTGGGCAAATTTGC
* *
416736 CTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTCATAGTGTATCAATACATCTGGGCAAATTTGC
416788 CTGCATGTATCGATACA
1 CTGCATGTATCGATACA
416805 AAGACCAGTG
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTCATAGTGTATCAATACATCTGGGCAAATTTGC
Found at i:416815 original size:52 final size:52
Alignment explanation
Indices: 416684--416824 Score: 185
Period size: 52 Copynumber: 2.7 Consensus size: 52
416674 GAAAACTTGA
*** * *
416684 CTGCATGTATCGATACATTTCATAGTGTATCAATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATAAGACAGTGTATCGATACATCTGGGCAAATTTGC
*** *
416736 CTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATAAGACAGTGTATCGATACATCTGGGCAAATTTGC
416788 CTGCATGTATCGATACA-AAGACCAGTGTATCGATACA
1 CTGCATGTATCGATACATAAGA-CAGTGTATCGATACA
416825 ATGTATCGAT
Statistics
Matches: 82, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
51 1 0.01
52 81 0.99
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (52 bp):
CTGCATGTATCGATACATAAGACAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:416831 original size:13 final size:13
Alignment explanation
Indices: 416813--416837 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
416803 CAAAGACCAG
416813 TGTATCGATACAA
1 TGTATCGATACAA
416826 TGTATCGATACA
1 TGTATCGATACA
416838 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:416898 original size:13 final size:13
Alignment explanation
Indices: 416876--416965 Score: 63
Period size: 13 Copynumber: 6.0 Consensus size: 13
416866 GGCAGTAGCT
*
416876 TTGTAGCGATACA
1 TTGTATCGATACA
416889 TTGTATCGATACAAAA
1 TTGTATCGATAC---A
416905 CTTATGTATCGATACA
1 --T-TGTATCGATACA
416921 TTGTATCGATACAACA
1 TTGTATCGAT---ACA
416937 CTTATGTATCGATACA
1 --T-TGTATCGATACA
416953 TTGTATCGATACA
1 TTGTATCGATACA
416966 ACACTTTATG
Statistics
Matches: 64, Mismatches: 1, Indels: 24
0.72 0.01 0.27
Matches are distributed among these distances:
13 32 0.50
14 2 0.03
16 8 0.12
18 2 0.03
19 20 0.31
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.34
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:416914 original size:19 final size:18
Alignment explanation
Indices: 416890--416987 Score: 90
Period size: 19 Copynumber: 5.8 Consensus size: 18
416880 AGCGATACAT
416890 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
416909 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
416922 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
416941 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
416954 TGTATCGATACAACACTTTA
1 TGTATCGATACAA-AC-TTA
416974 TGTATCGATACAAA
1 TGTATCGATACAAA
416988 TCGTTGAAAT
Statistics
Matches: 66, Mismatches: 0, Indels: 26
0.72 0.00 0.28
Matches are distributed among these distances:
13 22 0.33
14 2 0.03
16 4 0.06
18 1 0.02
19 24 0.36
20 13 0.20
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.34
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:416923 original size:32 final size:32
Alignment explanation
Indices: 416877--416985 Score: 191
Period size: 32 Copynumber: 3.4 Consensus size: 32
416867 GCAGTAGCTT
* *
416877 TGTAGCGATACATTGTATCGATACAAAACTTA
1 TGTATCGATACATTGTATCGATACAACACTTA
416909 TGTATCGATACATTGTATCGATACAACACTTA
1 TGTATCGATACATTGTATCGATACAACACTTA
416941 TGTATCGATACATTGTATCGATACAACACTTTA
1 TGTATCGATACATTGTATCGATACAACAC-TTA
416974 TGTATCGATACA
1 TGTATCGATACA
416986 AATCGTTGAA
Statistics
Matches: 74, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
32 59 0.80
33 15 0.20
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.34
Consensus pattern (32 bp):
TGTATCGATACATTGTATCGATACAACACTTA
Found at i:417356 original size:42 final size:42
Alignment explanation
Indices: 417288--417634 Score: 281
Period size: 42 Copynumber: 8.2 Consensus size: 42
417278 ACATGCAAAT
* *
417288 TAAGGGATGAAAAAGTCTCCAAGGTCAAAGCCGACAGGCAGAC
1 TAAGGGAAG-AAAAGTCTCCAGGGTCAAAGCCGACAGGCAGAC
* ** * *
417331 TGAGGGTTGAAAAGTCTCTAGGGTCAAGGCCGACAGGCAGAC
1 TAAGGGAAGAAAAGTCTCCAGGGTCAAAGCCGACAGGCAGAC
** *
417373 TAAGGGAAGAAAAGTCTCCAGGGTCAAAGTTGACAGGCAAAC
1 TAAGGGAAGAAAAGTCTCCAGGGTCAAAGCCGACAGGCAGAC
** ** * *
417415 TTTAA-ATAAG-GTAGTCTCCAAGGTCAAAGTCGACAGGCAGAC
1 --TAAGGGAAGAAAAGTCTCCAGGGTCAAAGCCGACAGGCAGAC
* * * *
417457 TAAAGGAAGGAAAGTCTCTAGGGTCAAAGCCAACAGGCAGAC
1 TAAGGGAAGAAAAGTCTCCAGGGTCAAAGCCGACAGGCAGAC
* * ** * * *
417499 TTTA--GATGAGGCAGTCTCCAGGGAT-GAAGCCGATAGGTAGAC
1 -TAAGGGAAGA-AAAGTCTCCAGGG-TCAAAGCCGACAGGCAGAC
* * * *
417541 TGAAGGGTAGGAAAGTCTCCAGGGTTAAAGTCGACAGGCAGAC
1 T-AAGGGAAGAAAAGTCTCCAGGGTCAAAGCCGACAGGCAGAC
* * *
417584 TAAAGGAAAGAAAAGTCTACATGGTCAAAGCCGACAGGCAGAC
1 T-AAGGGAAGAAAAGTCTCCAGGGTCAAAGCCGACAGGCAGAC
417627 TAAGGGAA
1 TAAGGGAA
417635 AACAAAAAAG
Statistics
Matches: 236, Mismatches: 57, Indels: 23
0.75 0.18 0.07
Matches are distributed among these distances:
40 3 0.01
41 7 0.03
42 148 0.63
43 73 0.31
44 5 0.02
ACGTcount: A:0.37, C:0.18, G:0.30, T:0.16
Consensus pattern (42 bp):
TAAGGGAAGAAAAGTCTCCAGGGTCAAAGCCGACAGGCAGAC
Found at i:420670 original size:28 final size:28
Alignment explanation
Indices: 420638--420711 Score: 121
Period size: 28 Copynumber: 2.6 Consensus size: 28
420628 GAAATAGAAT
*
420638 CGGGGTTGGAGTATCCCCTCAAAAATAA
1 CGGGGTTGGAGTATCCCCGCAAAAATAA
*
420666 CGGGGTTGGAGTATCCCCGCGAAAATAA
1 CGGGGTTGGAGTATCCCCGCAAAAATAA
*
420694 CAGGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
420712 AATTGTGAGA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.27, C:0.23, G:0.30, T:0.20
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGCAAAAATAA
Found at i:423207 original size:32 final size:32
Alignment explanation
Indices: 423158--423238 Score: 128
Period size: 32 Copynumber: 2.6 Consensus size: 32
423148 TTGGCAGTAG
*
423158 CTTA-GTAGCGATACATTGTATCGAGACAAAA
1 CTTATGTATCGATACATTGTATCGAGACAAAA
* *
423189 CTTATGTATCGATACATTGTATCGATACAACA
1 CTTATGTATCGATACATTGTATCGAGACAAAA
423221 CTTATGTATCGATACATT
1 CTTATGTATCGATACATT
423239 TACAGTTTGT
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
31 4 0.09
32 42 0.91
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (32 bp):
CTTATGTATCGATACATTGTATCGAGACAAAA
Found at i:423211 original size:13 final size:13
Alignment explanation
Indices: 423193--423217 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
423183 ACAAAACTTA
423193 TGTATCGATACAT
1 TGTATCGATACAT
423206 TGTATCGATACA
1 TGTATCGATACA
423218 ACACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:423251 original size:21 final size:18
Alignment explanation
Indices: 423173--423258 Score: 65
Period size: 19 Copynumber: 4.8 Consensus size: 18
423163 TAGCGATACA
* *
423173 TTGTATCGAGACAAAACT
1 TTGTATCGATACAACACT
423191 TATGTATCGAT---ACA--
1 T-TGTATCGATACAACACT
423205 TTGTATCGATACAACACT
1 TTGTATCGATACAACACT
*
423223 TATGTATCGATACATTTACAGT
1 T-TGTATCGATACA---ACACT
423245 TTGTATCGATACAA
1 TTGTATCGATACAA
423259 ATCGTTTGAA
Statistics
Matches: 55, Mismatches: 3, Indels: 20
0.71 0.04 0.26
Matches are distributed among these distances:
13 9 0.16
14 1 0.02
16 5 0.09
18 3 0.05
19 20 0.36
21 12 0.22
22 5 0.09
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (18 bp):
TTGTATCGATACAACACT
Found at i:423322 original size:21 final size:20
Alignment explanation
Indices: 423296--423334 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
423286 GTGGGGACCT
423296 TGTATCGATACATTCTAGAAA
1 TGTATCGATACATT-TAGAAA
423317 TGTATCGATACATTTAGA
1 TGTATCGATACATTTAGA
423335 TAAAAATGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (20 bp):
TGTATCGATACATTTAGAAA
Found at i:424320 original size:55 final size:55
Alignment explanation
Indices: 424094--424320 Score: 269
Period size: 55 Copynumber: 4.0 Consensus size: 55
424084 AAAGGAAAAT
* *
424094 AAAGTGCGTCCTACTCTTTGAGGACT-AAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGG
1 AAAG-GCGTCCTGCTCTTTGAGGACTGAAAAA-TGCCACCAACTTGTGTGGGCTTT------G
* * *
424156 AAAGGCGTCCTGCTCTTTGAGGATTGGAAAATGCCACTAACTTGTGTGGGCTTT-
1 AAAGGCGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTG
* * *
424210 AAGAGGCGTCCTGCTCTTTGAGGACTGGAAAATGCCACTAACTTGTATGGGCTTTG
1 AA-AGGCGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTG
* *
424266 AAAGGCGTCTTGCTCTTTGAGGGCTGAAAAATGCCACCAACTTGTGTGGGCTTTG
1 AAAGGCGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTG
424321 CTAGGCTTCA
Statistics
Matches: 150, Mismatches: 12, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
54 2 0.01
55 98 0.65
56 2 0.01
61 40 0.27
62 8 0.05
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (55 bp):
AAAGGCGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTG
Found at i:430669 original size:22 final size:19
Alignment explanation
Indices: 430621--430669 Score: 53
Period size: 19 Copynumber: 2.4 Consensus size: 19
430611 TAATTAAGCA
430621 AATACTGATGAATGATTATG
1 AATA-TGATGAATGATTATG
*
430641 AAAATGATGAATGAATGTCATG
1 AATATGATGAATG-AT-T-ATG
430663 AATATGA
1 AATATGA
430670 ATACCATTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 9 0.38
20 5 0.21
21 1 0.04
22 9 0.38
ACGTcount: A:0.45, C:0.04, G:0.20, T:0.31
Consensus pattern (19 bp):
AATATGATGAATGATTATG
Found at i:434238 original size:20 final size:20
Alignment explanation
Indices: 434213--434266 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
434203 GCCAAGGAAA
***
434213 TGTATCGATACATTTTTCTG
1 TGTATCGATACATCAATCTG
*
434233 TGTATCGATACATCAATCTT
1 TGTATCGATACATCAATCTG
434253 TGTATCGATACATC
1 TGTATCGATACATC
434267 TAGGAAGTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.26, C:0.19, G:0.13, T:0.43
Consensus pattern (20 bp):
TGTATCGATACATCAATCTG
Found at i:436681 original size:51 final size:51
Alignment explanation
Indices: 436618--436733 Score: 153
Period size: 51 Copynumber: 2.3 Consensus size: 51
436608 TTTTCATCTT
* * * *
436618 GGGGATACTCCAA-TCCCGGTTTCATTTCCAAAACATCAATTTTTCTTAATC
1 GGGGATACTCCAACT-CCGATTTCATTTCCAAAACACCAATTTTCCATAATC
* * *
436669 GGGGATACTCCAACTCCGATTTTATTTCTAAAACACCCATTTTCCATAATC
1 GGGGATACTCCAACTCCGATTTCATTTCCAAAACACCAATTTTCCATAATC
436720 GGGGATACTCCAAC
1 GGGGATACTCCAAC
436734 CCTGTTATTT
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
51 56 0.98
52 1 0.02
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.32
Consensus pattern (51 bp):
GGGGATACTCCAACTCCGATTTCATTTCCAAAACACCAATTTTCCATAATC
Found at i:436757 original size:79 final size:79
Alignment explanation
Indices: 436669--437078 Score: 565
Period size: 79 Copynumber: 5.2 Consensus size: 79
436659 TTTCTTAATC
* * * *
436669 GGGGATACTCCAACTCCGATTTTATTTCTAAAACACCCATTTTCCATAATCGGGGATACTCCAAC
1 GGGGATACTCCAACCCCGATTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAAC
*
436734 CCTGTTATTTTCGA
66 CCCGTTATTTTCGA
*
436748 GGGGATACTCTAACCCCGATTTTATTTCTAAAACATCAATTTTTCAT-A--GGGGATACTCCAAC
1 GGGGATACTCCAACCCCGATTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAAC
*
436810 CTCGTTATTTTCGA
66 CCCGTTATTTTCGA
* ** * * *
436824 GGGGATACCCCAACCCCGGCTTTATTTCTAAAATATTAATTTCTCATAATCGGGGATACTCCAAC
1 GGGGATACTCCAACCCCGATTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAAC
*
436889 CCCGTTATTTCCGA
66 CCCGTTATTTTCGA
* * * *
436903 GGGGATACTTCAACCCCGATTTTATTTCTAAACCATCAATTTTTTATAGTCGGGGATACTCCAAC
1 GGGGATACTCCAACCCCGATTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAAC
* *
436968 CCCCTTATTTCCGA
66 CCCGTTATTTTCGA
* * * * * *
436982 GGGGATACTCCAATCTCGATTTTATTTCTAAATCATCGATTTTTCACAATCGGGGATACTCTAAC
1 GGGGATACTCCAACCCCGATTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAAC
437047 CCCGTTATTTTCGA
66 CCCGTTATTTTCGA
437061 GGGGATACTCCAACCCCG
1 GGGGATACTCCAACCCCG
437079 TTATTATCTC
Statistics
Matches: 288, Mismatches: 40, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
76 66 0.23
77 1 0.00
78 1 0.00
79 220 0.76
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.33
Consensus pattern (79 bp):
GGGGATACTCCAACCCCGATTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAAC
CCCGTTATTTTCGA
Found at i:439301 original size:16 final size:16
Alignment explanation
Indices: 439277--439307 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
439267 TTAGATAAAT
*
439277 TTTTTTTATTATTTTA
1 TTTTGTTATTATTTTA
439293 TTTTGTTATTATTTT
1 TTTTGTTATTATTTT
439308 TTATTTTTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.00, G:0.03, T:0.81
Consensus pattern (16 bp):
TTTTGTTATTATTTTA
Found at i:440012 original size:11 final size:11
Alignment explanation
Indices: 439996--440052 Score: 51
Period size: 13 Copynumber: 4.8 Consensus size: 11
439986 CATATTCCTT
439996 TTTGCTCGTCC
1 TTTGCTCGTCC
*
440007 TTTGCTACTCTCC
1 TTTGCT-C-GTCC
*
440020 TTTGCTCGCCC
1 TTTGCTCGTCC
*
440031 TTTGCTGCTCTCC
1 TTTGCT-C-GTCC
440044 TTTGCTCGT
1 TTTGCTCGT
440053 ATTGCTTGTT
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
11 15 0.42
12 4 0.11
13 17 0.47
ACGTcount: A:0.02, C:0.37, G:0.16, T:0.46
Consensus pattern (11 bp):
TTTGCTCGTCC
Found at i:440020 original size:13 final size:12
Alignment explanation
Indices: 440004--440050 Score: 60
Period size: 13 Copynumber: 3.8 Consensus size: 12
439994 TTTTTGCTCG
440004 TCCTTTGCTACTC
1 TCCTTTGCT-CTC
*
440017 TCCTTTGCTCGC
1 TCCTTTGCTCTC
440029 -CCTTTGCTGCTC
1 TCCTTTGCT-CTC
440041 TCCTTTGCTC
1 TCCTTTGCTC
440051 GTATTGCTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
11 8 0.27
12 5 0.17
13 17 0.57
ACGTcount: A:0.02, C:0.40, G:0.13, T:0.45
Consensus pattern (12 bp):
TCCTTTGCTCTC
Found at i:440025 original size:24 final size:24
Alignment explanation
Indices: 439996--440052 Score: 96
Period size: 24 Copynumber: 2.4 Consensus size: 24
439986 CATATTCCTT
439996 TTTGCTCGTCCTTTGCTACTCTCC
1 TTTGCTCGTCCTTTGCTACTCTCC
* *
440020 TTTGCTCGCCCTTTGCTGCTCTCC
1 TTTGCTCGTCCTTTGCTACTCTCC
440044 TTTGCTCGT
1 TTTGCTCGT
440053 ATTGCTTGTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.02, C:0.37, G:0.16, T:0.46
Consensus pattern (24 bp):
TTTGCTCGTCCTTTGCTACTCTCC
Found at i:440987 original size:17 final size:18
Alignment explanation
Indices: 440965--441102 Score: 81
Period size: 17 Copynumber: 8.3 Consensus size: 18
440955 AAAATATTTT
*
440965 ATTTTTATT-TTTTTTGA
1 ATTTTTATTATTTATTGA
*
440982 ATTTTT-TTATTTCTTG-
1 ATTTTTATTATTTATTGA
440998 ATTTTTATTATTATATTGA
1 ATTTTTATTATT-TATTGA
*
441017 A--TTT-TTATTTCTTG-
1 ATTTTTATTATTTATTGA
441031 ATTTTTATTATTATATTGA
1 ATTTTTATTATT-TATTGA
*
441050 A----TATTATTTCTTG-
1 ATTTTTATTATTTATTGA
* *
441063 ATGTTTATTATTATATTTA
1 ATTTTTATTATT-TATTGA
*
441082 A-TATTATTATTT-TT-A
1 ATTTTTATTATTTATTGA
441097 ATTTTT
1 ATTTTT
441103 TTGATTTTTT
Statistics
Matches: 95, Mismatches: 10, Indels: 33
0.69 0.07 0.24
Matches are distributed among these distances:
13 1 0.01
14 5 0.05
15 13 0.14
16 21 0.22
17 33 0.35
18 19 0.20
19 3 0.03
ACGTcount: A:0.25, C:0.02, G:0.05, T:0.68
Consensus pattern (18 bp):
ATTTTTATTATTTATTGA
Found at i:441002 original size:14 final size:14
Alignment explanation
Indices: 440985--441039 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
440975 TTTTTGAATT
440985 TTTTTATTTCTTGA
1 TTTTTATTTCTTGA
*
440999 TTTTTATTATTATATTGAA
1 --TTT-TTATT-TCTTG-A
441018 TTTTTATTTCTTGA
1 TTTTTATTTCTTGA
441032 TTTTTATT
1 TTTTTATT
441040 ATTATATTGA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
14 9 0.26
15 4 0.12
16 8 0.24
17 8 0.24
18 4 0.12
19 1 0.03
ACGTcount: A:0.20, C:0.04, G:0.05, T:0.71
Consensus pattern (14 bp):
TTTTTATTTCTTGA
Found at i:441002 original size:33 final size:33
Alignment explanation
Indices: 440985--441102 Score: 168
Period size: 33 Copynumber: 3.6 Consensus size: 33
440975 TTTTTGAATT
440985 TTTTTATTTCTTGATTTTTATTATTATATTGAA
1 TTTTTATTTCTTGATTTTTATTATTATATTGAA
441018 TTTTTATTTCTTGATTTTTATTATTATATTGAA
1 TTTTTATTTCTTGATTTTTATTATTATATTGAA
* * *
441051 -TATTATTTCTTGATGTTTATTATTATATTTAA
1 TTTTTATTTCTTGATTTTTATTATTATATTGAA
*
441083 TATTATTATTT-TTAATTTTT
1 T-TT-TTATTTCTTGATTTTT
441103 TTGATTTTTT
Statistics
Matches: 76, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
32 29 0.38
33 33 0.43
34 8 0.11
35 6 0.08
ACGTcount: A:0.25, C:0.03, G:0.05, T:0.67
Consensus pattern (33 bp):
TTTTTATTTCTTGATTTTTATTATTATATTGAA
Found at i:441054 original size:15 final size:15
Alignment explanation
Indices: 441036--441091 Score: 51
Period size: 15 Copynumber: 3.6 Consensus size: 15
441026 TCTTGATTTT
441036 TATTATTATATTGAA
1 TATTATTATATTGAA
* *
441051 TATTATT-TCTTGATGTT
1 TATTATTATATTGA---A
*
441068 TATTATTATATTTAA
1 TATTATTATATTGAA
441083 TATTATTAT
1 TATTATTAT
441092 TTTTAATTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 8
0.71 0.11 0.18
Matches are distributed among these distances:
14 5 0.16
15 16 0.50
17 7 0.22
18 4 0.12
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61
Consensus pattern (15 bp):
TATTATTATATTGAA
Found at i:441062 original size:32 final size:32
Alignment explanation
Indices: 440988--441089 Score: 168
Period size: 32 Copynumber: 3.2 Consensus size: 32
440978 TTGAATTTTT
*
440988 TTATTTCTTGATTTTTATTATTATATTGAATTT
1 TTATTTCTTGATTTTTATTATTATATTGAA-TA
441021 TTATTTCTTGATTTTTATTATTATATTGAATA
1 TTATTTCTTGATTTTTATTATTATATTGAATA
* *
441053 TTATTTCTTGATGTTTATTATTATATTTAATA
1 TTATTTCTTGATTTTTATTATTATATTGAATA
441085 TTATT
1 TTATT
441090 ATTTTTAATT
Statistics
Matches: 66, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
32 36 0.55
33 30 0.45
ACGTcount: A:0.26, C:0.03, G:0.06, T:0.65
Consensus pattern (32 bp):
TTATTTCTTGATTTTTATTATTATATTGAATA
Found at i:441096 original size:15 final size:15
Alignment explanation
Indices: 441068--441098 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
441058 TCTTGATGTT
441068 TATTATTATATTTAA
1 TATTATTATATTTAA
*
441083 TATTATTATTTTTAA
1 TATTATTATATTTAA
441098 T
1 T
441099 TTTTTTGATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (15 bp):
TATTATTATATTTAA
Found at i:444499 original size:21 final size:22
Alignment explanation
Indices: 444475--444520 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
444465 TAAAAATATT
444475 ATATTAT-TTATATAAATTTTA
1 ATATTATATTATATAAATTTTA
444496 ATA-TATATTATATAAATTTTA
1 ATATTATATTATATAAATTTTA
444517 ATAT
1 ATAT
444521 ATTATTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 3 0.13
21 20 0.87
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (22 bp):
ATATTATATTATATAAATTTTA
Found at i:444525 original size:19 final size:21
Alignment explanation
Indices: 444482--444522 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
444472 ATTATATTAT
444482 TTATATAAATTTTAATATATA
1 TTATATAAATTTTAATATATA
444503 TTATATAAATTTTAATATAT
1 TTATATAAATTTTAATATAT
444523 TATTTTTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (21 bp):
TTATATAAATTTTAATATATA
Found at i:444548 original size:11 final size:11
Alignment explanation
Indices: 444518--444565 Score: 69
Period size: 11 Copynumber: 4.2 Consensus size: 11
444508 TAAATTTTAA
444518 TATATTATTTTT
1 TATATTA-TTTT
*
444530 TAATATTATATT
1 T-ATATTATTTT
444542 TATATTATTTT
1 TATATTATTTT
444553 TATATTATTTT
1 TATATTATTTT
444564 TA
1 TA
444566 AGCATTCTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
11 22 0.67
12 5 0.15
13 6 0.18
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (11 bp):
TATATTATTTT
Found at i:444827 original size:13 final size:13
Alignment explanation
Indices: 444794--444827 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
444784 TTGGGATTTC
*
444794 TTTTTCTTCACTT
1 TTTTTTTTCACTT
*
444807 TTCTTTTTCACTT
1 TTTTTTTTCACTT
444820 TTTTTTTT
1 TTTTTTTT
444828 TTGGATTTTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.06, C:0.18, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTTTTTTCACTT
Found at i:444945 original size:16 final size:16
Alignment explanation
Indices: 444924--444967 Score: 54
Period size: 16 Copynumber: 2.7 Consensus size: 16
444914 AAATATAATT
*
444924 TTTATAATTTTTTAAA
1 TTTATAATTTATTAAA
444940 TTTATAAATTTATTAAA
1 TTTAT-AATTTATTAAA
444957 TATTA-AATTTA
1 T-TTATAATTTA
444968 GTGATATATT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
16 11 0.44
17 11 0.44
18 3 0.12
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
TTTATAATTTATTAAA
Found at i:445402 original size:22 final size:22
Alignment explanation
Indices: 445356--445405 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
445346 GTAATAAAAA
*
445356 TTTAATCAATTTTAAAATTATT
1 TTTAATCAATTTTAAAATTAAT
445378 TTTAATC-ATTATT-AAATTAAAT
1 TTTAATCAATT-TTAAAATT-AAT
445400 TTTAAT
1 TTTAAT
445406 TAAATTATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
21 8 0.32
22 17 0.68
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.54
Consensus pattern (22 bp):
TTTAATCAATTTTAAAATTAAT
Found at i:445954 original size:11 final size:11
Alignment explanation
Indices: 445927--445976 Score: 50
Period size: 10 Copynumber: 4.5 Consensus size: 11
445917 AAGTTTAGTC
445927 ATAAAAAGTTAA
1 ATAAAAAG-TAA
*
445939 TTAAAAAGTAA
1 ATAAAAAGTAA
*
445950 AT-AAAATTGAA
1 ATAAAAAGT-AA
445961 ATAAAAA-TAA
1 ATAAAAAGTAA
445971 ATAAAA
1 ATAAAA
445977 TGAAAGTATT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
10 13 0.39
11 9 0.27
12 11 0.33
ACGTcount: A:0.70, C:0.00, G:0.06, T:0.24
Consensus pattern (11 bp):
ATAAAAAGTAA
Found at i:445971 original size:21 final size:21
Alignment explanation
Indices: 445940--445981 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
445930 AAAAGTTAAT
445940 TAAAAAGTAAATAAAATTGAAA
1 TAAAAAGTAAATAAAA-TGAAA
445962 TAAAAA-TAAATAAAATGAAA
1 TAAAAAGTAAATAAAATGAAA
445982 GTATTTTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 5 0.25
21 9 0.45
22 6 0.30
ACGTcount: A:0.71, C:0.00, G:0.07, T:0.21
Consensus pattern (21 bp):
TAAAAAGTAAATAAAATGAAA
Found at i:446898 original size:50 final size:48
Alignment explanation
Indices: 446807--446901 Score: 145
Period size: 50 Copynumber: 1.9 Consensus size: 48
446797 AGAACTTCTC
*
446807 GACAAATTATTTGAATATGCAATTCCTTAAGAAGCAAAACTCTACCTT
1 GACAAATTATTTGAATATGCAATTCCCTAAGAAGCAAAACTCTACCTT
* *
446855 GACAAATTATTTGAATATGAAGAATTCCCTCAGAAGCAAAACTCTAC
1 GACAAATTATTTGAATATG--CAATTCCCTAAGAAGCAAAACTCTAC
446902 TTCTGACTTG
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
48 19 0.45
50 23 0.55
ACGTcount: A:0.41, C:0.19, G:0.12, T:0.28
Consensus pattern (48 bp):
GACAAATTATTTGAATATGCAATTCCCTAAGAAGCAAAACTCTACCTT
Found at i:449055 original size:31 final size:33
Alignment explanation
Indices: 449015--449092 Score: 90
Period size: 33 Copynumber: 2.4 Consensus size: 33
449005 TTTTTCATTT
*
449015 TATCAATACATTCT-GGGTTTTAACCCAAAT-A
1 TATCGATACATTCTAGGGTTTTAACCCAAATGA
** *
449046 TATCGATACATTCTAAGTTTTTTGACCCAAATGA
1 TATCGATACATTCT-AGGGTTTTAACCCAAATGA
449080 -ATCGATACATTCT
1 TATCGATACATTCT
449093 TCAATGTATC
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
31 13 0.32
33 26 0.65
34 1 0.03
ACGTcount: A:0.33, C:0.19, G:0.10, T:0.37
Consensus pattern (33 bp):
TATCGATACATTCTAGGGTTTTAACCCAAATGA
Found at i:452590 original size:19 final size:21
Alignment explanation
Indices: 452551--452592 Score: 61
Period size: 19 Copynumber: 2.1 Consensus size: 21
452541 TTGATTAAAA
*
452551 TTAATTATAAATTTTCAATAT
1 TTAATTATAAATTTCCAATAT
452572 TTAATTAT-AA-TTCCAATAT
1 TTAATTATAAATTTCCAATAT
452591 TT
1 TT
452593 GAAATTGATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 10 0.50
20 2 0.10
21 8 0.40
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.52
Consensus pattern (21 bp):
TTAATTATAAATTTCCAATAT
Found at i:453117 original size:32 final size:30
Alignment explanation
Indices: 453081--453139 Score: 75
Period size: 32 Copynumber: 1.9 Consensus size: 30
453071 GAAATCAAAT
453081 ACAAAGAGCT-TAGAAAAATAATAACAATATGA
1 ACAAA-AGCTCTAGAAAAAT-ATAA-AATATGA
*
453113 ACAAAAGCTCTTGAAAAATATAAAATA
1 ACAAAAGCTCTAGAAAAATATAAAATA
453140 CTTTGATCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
30 4 0.16
31 8 0.32
32 13 0.52
ACGTcount: A:0.59, C:0.10, G:0.10, T:0.20
Consensus pattern (30 bp):
ACAAAAGCTCTAGAAAAATATAAAATATGA
Found at i:453438 original size:13 final size:13
Alignment explanation
Indices: 453420--453445 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
453410 AAATTTTATG
453420 TGTATCGATACAT
1 TGTATCGATACAT
453433 TGTATCGATACAT
1 TGTATCGATACAT
453446 ATTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:453459 original size:32 final size:34
Alignment explanation
Indices: 453399--453463 Score: 107
Period size: 32 Copynumber: 2.0 Consensus size: 34
453389 TACAAGCCAA
453399 TGTATCGATACAAATTTTATGTGTATCGATACAT
1 TGTATCGATACAAATTTTATGTGTATCGATACAT
*
453433 TGTATCGATACATA-TTT-TGTGTATCGATACA
1 TGTATCGATACAAATTTTATGTGTATCGATACA
453464 AGTTTGGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 14 0.47
33 3 0.10
34 13 0.43
ACGTcount: A:0.31, C:0.12, G:0.15, T:0.42
Consensus pattern (34 bp):
TGTATCGATACAAATTTTATGTGTATCGATACAT
Found at i:454306 original size:110 final size:110
Alignment explanation
Indices: 454109--454335 Score: 447
Period size: 110 Copynumber: 2.1 Consensus size: 110
454099 ACAAATTTGT
454109 ACAT-TCTCCCCCTTAATAAGATAATTCACGCATTCTCCCCTTTATCTCCCCTTTTTATTAATAA
1 ACATATCTCCCCCTTAATAAGATAATTCACGCATTCTCCCCTTTATCTCCCCTTTTTATTAATAA
454173 TTCTCCCCCTTAATCAAGTAATTCATATCAAAAATTTATTTGCAC
66 TTCTCCCCCTTAATCAAGTAATTCATATCAAAAATTTATTTGCAC
454218 ACATATCTCCCCCTTAATAAGATAATTCACGCATTCTCCCCTTTATCTCCCCTTTTTATTAATAA
1 ACATATCTCCCCCTTAATAAGATAATTCACGCATTCTCCCCTTTATCTCCCCTTTTTATTAATAA
454283 TTCTCCCCCTTAATCAAGTAATTCATATCAAAAATTTATTTGCAC
66 TTCTCCCCCTTAATCAAGTAATTCATATCAAAAATTTATTTGCAC
454328 ACATATCT
1 ACATATCT
454336 ACTTTCTCTC
Statistics
Matches: 117, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
109 4 0.03
110 113 0.97
ACGTcount: A:0.30, C:0.28, G:0.04, T:0.38
Consensus pattern (110 bp):
ACATATCTCCCCCTTAATAAGATAATTCACGCATTCTCCCCTTTATCTCCCCTTTTTATTAATAA
TTCTCCCCCTTAATCAAGTAATTCATATCAAAAATTTATTTGCAC
Found at i:455662 original size:21 final size:20
Alignment explanation
Indices: 455633--455673 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
455623 GACTAGTGTG
*
455633 GGGACTGCCCGGTTGTGACCT
1 GGGACTG-CCGGTCGTGACCT
*
455654 GGGAGTGCCGGTCGTGACCT
1 GGGACTGCCGGTCGTGACCT
455674 AGTGGTGCTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.10, C:0.27, G:0.41, T:0.22
Consensus pattern (20 bp):
GGGACTGCCGGTCGTGACCT
Found at i:456108 original size:13 final size:13
Alignment explanation
Indices: 456090--456127 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
456080 ATAAACCCCC
456090 TGTATCGATACAG
1 TGTATCGATACAG
*
456103 TGTATCGATACAT
1 TGTATCGATACAG
456116 TGTATCGATACA
1 TGTATCGATACA
456128 AAGAAAAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:458301 original size:17 final size:17
Alignment explanation
Indices: 458279--458314 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
458269 GATAAAGTGT
458279 TTGAAAAAAAAAAAAAA
1 TTGAAAAAAAAAAAAAA
458296 TTGAAAAAAAAAAAAAA
1 TTGAAAAAAAAAAAAAA
458313 TT
1 TT
458315 CCAAATGTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.17
Consensus pattern (17 bp):
TTGAAAAAAAAAAAAAA
Found at i:458342 original size:21 final size:21
Alignment explanation
Indices: 458318--458374 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
458308 AAAAATTCCA
458318 AATGTATCGATACATTTGTAG
1 AATGTATCGATACATTTGTAG
*
458339 AATGTATCGATACATTTGTGG
1 AATGTATCGATACATTTGTAG
458360 AATGTATCGATACAT
1 AATGTATCGATACAT
458375 CCTACAAATG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (21 bp):
AATGTATCGATACATTTGTAG
Found at i:458454 original size:19 final size:19
Alignment explanation
Indices: 458430--458497 Score: 85
Period size: 19 Copynumber: 3.9 Consensus size: 19
458420 AATTCAACAA
458430 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
458449 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
458464 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
458481 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
458498 TTAGCTACTG
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 2 0.05
19 28 0.65
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:458469 original size:13 final size:13
Alignment explanation
Indices: 458451--458475 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
458441 ACATAAGTTT
458451 TGTATCGATACAA
1 TGTATCGATACAA
458464 TGTATCGATACA
1 TGTATCGATACA
458476 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:458473 original size:32 final size:32
Alignment explanation
Indices: 458432--458494 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
458422 TTCAACAATT
*
458432 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
458464 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
458495 TAATTAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:458555 original size:13 final size:13
Alignment explanation
Indices: 458537--458562 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
458527 CATTTTTCTG
458537 TGTATCGATACAT
1 TGTATCGATACAT
458550 TGTATCGATACAT
1 TGTATCGATACAT
458563 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:458559 original size:33 final size:33
Alignment explanation
Indices: 458517--458583 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
458507 GCCAAGGAAA
***
458517 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
458550 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
458583 T
1 T
458584 TGGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:461101 original size:28 final size:27
Alignment explanation
Indices: 461034--461102 Score: 95
Period size: 27 Copynumber: 2.5 Consensus size: 27
461024 CTTCACAATC
*
461034 GGGGATACTCCAACCCCGTTAATCATC
1 GGGGATACTCCAACCCCGTTAATCATA
*
461061 GGGGATACTCCAACCCCGTTATTTC-TGA
1 GGGGATACTCCAACCCCGTTA-ATCAT-A
461089 GGGGATACTCCAAC
1 GGGGATACTCCAAC
461103 TCCGGTTTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (27 bp):
GGGGATACTCCAACCCCGTTAATCATA
Found at i:461174 original size:52 final size:53
Alignment explanation
Indices: 461089--461258 Score: 190
Period size: 52 Copynumber: 3.3 Consensus size: 53
461079 TTATTTCTGA
* *
461089 GGGGATACTCCAACTCCGGTTTTA--TCGCTAAAACACTAATTTTTCCACAATC
1 GGGGATACTCCAACTCCGGTTTTATTTC-CAAAAACACTAATTTTTCCATAATC
* * *
461141 GGGGATACTCCAA-TCCTGGTTTTATTTTC-AAAACGCTAA-TTTTCCTTTAATC
1 GGGGATACTCCAACTCC-GGTTTTATTTCCAAAAACACTAATTTTTCC-ATAATC
* * *
461193 GGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTT-CATAATC
1 GGGGATACTCCAACTCCGGTTTTATTTCCAAAAACACTAATTTTTCCATAATC
*
461245 GAGGATACTCCAAC
1 GGGGATACTCCAAC
461259 CTCGTTATTT
Statistics
Matches: 100, Mismatches: 11, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
51 9 0.09
52 74 0.74
53 12 0.12
54 5 0.05
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.34
Consensus pattern (53 bp):
GGGGATACTCCAACTCCGGTTTTATTTCCAAAAACACTAATTTTTCCATAATC
Found at i:461277 original size:27 final size:29
Alignment explanation
Indices: 461242--461317 Score: 95
Period size: 28 Copynumber: 2.7 Consensus size: 29
461232 ATTTTTCATA
* *
461242 ATCGAGGATACTCCAACCTCGTTA-TTTC-
1 ATCG-GGATACTCCAACCCCGTTACTTCCG
461270 ATCGGGATACTCCAACCCCGTTACTTCCG
1 ATCGGGATACTCCAACCCCGTTACTTCCG
*
461299 A-GGGGATACTCCAACCCCG
1 ATCGGGATACTCCAACCCCG
461318 GCTTTATTCC
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
27 18 0.42
28 24 0.56
29 1 0.02
ACGTcount: A:0.24, C:0.34, G:0.18, T:0.24
Consensus pattern (29 bp):
ATCGGGATACTCCAACCCCGTTACTTCCG
Found at i:461304 original size:211 final size:212
Alignment explanation
Indices: 460919--461324 Score: 613
Period size: 211 Copynumber: 1.9 Consensus size: 212
460909 TTATCAATTC
*
460919 TCCACAATCGAGGATATTCCAACTCCGATTTTATTTTCAAAACACTAATTTTCTATAATCGGGGA
1 TCCACAATCGAGGATACTCCAACTCCGATTTTATTTTCAAAACACTAATTTTCTATAATCGGGGA
* *
460984 TACTCTAACTCCGATTTTATTTCCAAAAAAACACCAATTTCTTCACAATCGGGGATACTCCAACC
66 TACTCCAACTCCGATTTTATTTCC-AAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACC
* * * *
461049 CCGTTAATCATCGGGGATACTCCAACCCCGTTATTTCTGAGGGGATACTCCAACTCCGGTTTTAT
130 CCGTTAATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGGCTTTAT
461114 CGCTAAAACACTAATTTT
195 CGCTAAAACACTAATTTT
* * * *
461132 TCCACAATCGGGGATACTCCAA-TCCTGGTTTTATTTTCAAAACGCTAATTTTCCTTTAATCGGG
1 TCCACAATCGAGGATACTCCAACTCC-GATTTTATTTTCAAAACACTAATTTT-CTATAATCGGG
* *
461196 GATACTCCAACTCCGATTTTATTTCC-AAAAATACCAATTT-TTCATAATCGAGGATACTCCAAC
64 GATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAAC
* *
461259 CTCGTTATTTCATC-GGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGGCTTT
129 CCCGTTA-ATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGGCTTT
461323 AT
193 AT
461325 TCCCAAAATA
Statistics
Matches: 175, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
211 75 0.43
212 21 0.12
213 44 0.25
214 35 0.20
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.32
Consensus pattern (212 bp):
TCCACAATCGAGGATACTCCAACTCCGATTTTATTTTCAAAACACTAATTTTCTATAATCGGGGA
TACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACCC
CGTTAATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGGCTTTATC
GCTAAAACACTAATTTT
Found at i:461324 original size:107 final size:106
Alignment explanation
Indices: 460979--461391 Score: 319
Period size: 107 Copynumber: 3.9 Consensus size: 106
460969 TTCTATAATC
*
460979 GGGGATACTCTAACTCCGATTTTATTTCCAAAAAAACACCAATTTCTTCACAATCGGGGATACTC
1 GGGGATACTCCAACTCCGATTTTATTTCC--AAAAACACCAATTT-TTCACAATCGGGGATACTC
* *
461044 CAACCCCGTTA-ATCATCGGGGATACTCCAACCCCGTTATTTCTGA
63 CAACCCCGTTATTTCATC-GGGATACTCCAACCCCGTTA-TTCCGA
* * *
461089 GGGGATACTCCAACTCCGGTTTTA--TCGCTAAAACACTAATTTTTCCACAATCGGGGATACTCC
1 GGGGATACTCCAACTCCGATTTTATTTC-CAAAAACACCAATTTTT-CACAATCGGGGATACTCC
** * * * * ** * *
461152 AATCCTGGTTTTATTT--TC--AAAACGCTAATTTTCCTTTAAT-C--
64 AA-CCCCG--TTATTTCATCGGGATACTCCAA--CCCCGTTATTCCGA
* * *
461193 GGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTTCATAATCGAGGATACTCCAA
1 GGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTTCACAATCGGGGATACTCCAA
*
461258 CCTCGTTATTTCATCGGGATACTCCAACCCCGTTACTTCCGA
66 CCCCGTTATTTCATCGGGATACTCCAACCCCGTTA-TTCCGA
* ** * * *** * * *
461300 GGGGATACTCCAACCCCGGCTTTA-TTCCCAAAATATTGATTTCTCATAATTGGGGATACTCCAA
1 GGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTTCACAATCGGGGATACTCCAA
*
461364 CCCCGTTATTTTCGA-GGGGATACTCCAA
66 CCCCGTTA-TTTC-ATCGGGATACTCCAA
461392 TCCCAATTTT
Statistics
Matches: 240, Mismatches: 43, Indels: 43
0.74 0.13 0.13
Matches are distributed among these distances:
101 6 0.03
103 11 0.05
104 42 0.17
105 21 0.09
106 50 0.21
107 70 0.29
108 11 0.05
109 3 0.01
110 25 0.10
111 1 0.00
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.31
Consensus pattern (106 bp):
GGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTTCACAATCGGGGATACTCCAA
CCCCGTTATTTCATCGGGATACTCCAACCCCGTTATTCCGA
Found at i:461365 original size:106 final size:108
Alignment explanation
Indices: 461193--461391 Score: 260
Period size: 106 Copynumber: 1.9 Consensus size: 108
461183 TCCTTTAATC
* * *
461193 GGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTTCATAATCGAGGATACTCCAA
1 GGGGATACTCCAACCCCGACTTTATTTCCAAAAATACCAATTTCTCATAATCGAGGATACTCCAA
*
461258 CCTCGTTA-TTTC-ATCGGGATACTCCAACCCCGTTACTTCCGA
66 CCCCGTTATTTTCGA-CGGGATACTCCAACCCCGTTACTTCCGA
* * *** * *
461300 GGGGATACTCCAACCCCGGCTTTA-TTCCCAAAATATTGATTTCTCATAATTGGGGATACTCCAA
1 GGGGATACTCCAACCCCGACTTTATTTCCAAAAATACCAATTTCTCATAATCGAGGATACTCCAA
*
461364 CCCCGTTATTTTCGAGGGGATACTCCAA
66 CCCCGTTATTTTCGACGGGATACTCCAA
461392 TCCCAATTTT
Statistics
Matches: 78, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
106 40 0.51
107 37 0.47
108 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.30
Consensus pattern (108 bp):
GGGGATACTCCAACCCCGACTTTATTTCCAAAAATACCAATTTCTCATAATCGAGGATACTCCAA
CCCCGTTATTTTCGACGGGATACTCCAACCCCGTTACTTCCGA
Found at i:461502 original size:80 final size:78
Alignment explanation
Indices: 461273--461506 Score: 227
Period size: 80 Copynumber: 2.9 Consensus size: 78
461263 TTATTTCATC
* * * * *
461273 GGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGGCTTTATTCCCAAAATATTG
1 GGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCAGTTTTATT-CCAAAACATTG
**
461338 ATTTCTCATAATTG
65 ATTTCTCATAACCG
* * * * * * *
461352 GGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAATCCCAATTTTTTTTTTCTAATCATC
1 GGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAA-CCCCA-GTTTTATTCCAAAACATT
461417 GATTTCTCATAACCG
64 GATTTCTCATAACCG
* * * * *
461432 GGGATACTCCAGCCCCGTTATTTTCAAGGGAACACTCCAA-CCCTGTTATTATCTCCAAAACATT
1 GGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCAGTT-TTAT-TCCAAAACATT
*
461496 AAATTTCTCAT
64 -GATTTCTCAT
461507 CGGGAAATAT
Statistics
Matches: 123, Mismatches: 27, Indels: 9
0.77 0.17 0.06
Matches are distributed among these distances:
77 2 0.02
78 5 0.04
79 45 0.37
80 66 0.54
81 5 0.04
ACGTcount: A:0.26, C:0.28, G:0.14, T:0.32
Consensus pattern (78 bp):
GGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCAGTTTTATTCCAAAACATTGA
TTTCTCATAACCG
Found at i:462570 original size:15 final size:15
Alignment explanation
Indices: 462550--462580 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
462540 ATTTCGTTTG
*
462550 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
462565 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
462580 G
1 G
462581 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:466345 original size:32 final size:30
Alignment explanation
Indices: 466309--466367 Score: 75
Period size: 32 Copynumber: 1.9 Consensus size: 30
466299 GAAATCAAAT
466309 ACAAAGAGCT-TAGAAAAATAATAACAATATGA
1 ACAAA-AGCTCTAGAAAAAT-ATAA-AATATGA
*
466341 ACAAAAGCTCTTGAAAAATATAAAATA
1 ACAAAAGCTCTAGAAAAATATAAAATA
466368 CTTTGATCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
30 4 0.16
31 8 0.32
32 13 0.52
ACGTcount: A:0.59, C:0.10, G:0.10, T:0.20
Consensus pattern (30 bp):
ACAAAAGCTCTAGAAAAATATAAAATATGA
Found at i:466660 original size:19 final size:19
Alignment explanation
Indices: 466627--466691 Score: 54
Period size: 19 Copynumber: 3.6 Consensus size: 19
466617 TACAAGCCAA
466627 TGTATCGATACACATTTTATG
1 TGTATCGAT--ACATTTTATG
466648 TGTATCGATAC-----AT-
1 TGTATCGATACATTTTATG
466661 TGTATCGATACATATTT-TG
1 TGTATCGATACAT-TTTATG
466680 TGTATCGATACA
1 TGTATCGATACA
466692 AGTTTGGCTA
Statistics
Matches: 37, Mismatches: 0, Indels: 16
0.70 0.00 0.30
Matches are distributed among these distances:
13 11 0.30
14 2 0.05
18 1 0.03
19 14 0.38
21 9 0.24
ACGTcount: A:0.29, C:0.14, G:0.15, T:0.42
Consensus pattern (19 bp):
TGTATCGATACATTTTATG
Found at i:466666 original size:13 final size:13
Alignment explanation
Indices: 466648--466673 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
466638 ACATTTTATG
466648 TGTATCGATACAT
1 TGTATCGATACAT
466661 TGTATCGATACAT
1 TGTATCGATACAT
466674 ATTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Done.