Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold275
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1025155
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 499 characters in sequence are not A, C, G, or T
File 6 of 7
Found at i:744181 original size:111 final size:113
Alignment explanation
Indices: 744016--744289 Score: 355
Period size: 111 Copynumber: 2.4 Consensus size: 113
744006 AATGTTATTT
* * *
744016 TTTTAATTTATTAATGTAAATTTTTT-AAATATAATTAAATATCATTTTTTATTTTATTAAAAAT
1 TTTTAATTTATTAATGT-AATTTTTTAAAATTTAATTAAATATTATTTTTAATTTTATTAAAAAT
*
744080 AATGATAA-AAAATATTTTT-TTT-ATTTTA-TAAAAATATATAATTAATA
65 AATAATAATAAAATATTTTTATTTAATTTTATTAAAAA-A-ATAATTAATA
* * *
744127 TTTTAGTTTGTTAATGTAATTTTTTAAAATTTAATAAAATATTATTTTTAATTTTATTAAAAATA
1 TTTTAATTTATTAATGTAATTTTTTAAAATTTAATTAAATATTATTTTTAATTTTATTAAAAATA
* * *
744192 ATAATAATAAACTCTTTTTAATTTAATTTTATTTTAAAAAATAATTAATA
66 ATAATAATAAAATATTTTT-ATTTAATTTTA-TTAAAAAAATAATTAATA
744242 TTTTAATTTATTAATGTAATTTTTTTAAAA-TT-ATTAAATATTATTTTT
1 TTTTAATTTATTAATGTAA-TTTTTTAAAATTTAATTAAATATTATTTTT
744290 TATTATAAAA
Statistics
Matches: 142, Mismatches: 13, Indels: 13
0.85 0.08 0.08
Matches are distributed among these distances:
110 8 0.06
111 56 0.39
112 9 0.06
114 18 0.13
115 35 0.25
116 11 0.08
117 5 0.04
ACGTcount: A:0.43, C:0.01, G:0.02, T:0.54
Consensus pattern (113 bp):
TTTTAATTTATTAATGTAATTTTTTAAAATTTAATTAAATATTATTTTTAATTTTATTAAAAATA
ATAATAATAAAATATTTTTATTTAATTTTATTAAAAAAATAATTAATA
Found at i:744844 original size:17 final size:17
Alignment explanation
Indices: 744822--744855 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
744812 TTAATTATAT
*
744822 ATATTTAAATTTGTTAA
1 ATATTTAAATTTATTAA
744839 ATATTTAAATTTATTAA
1 ATATTTAAATTTATTAA
744856 TTTTTTCTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (17 bp):
ATATTTAAATTTATTAA
Found at i:745861 original size:24 final size:24
Alignment explanation
Indices: 745825--745870 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
745815 TAGTTCTTTT
745825 TTGTTTGTAAAAAATT-GTGACTTG
1 TTGTTTGT-AAAAATTGGTGACTTG
*
745849 TTGTTTGTCAAAATTGGTGACT
1 TTGTTTGTAAAAATTGGTGACT
745871 AATTTTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 14 0.70
ACGTcount: A:0.26, C:0.07, G:0.22, T:0.46
Consensus pattern (24 bp):
TTGTTTGTAAAAATTGGTGACTTG
Found at i:747445 original size:75 final size:75
Alignment explanation
Indices: 747322--747471 Score: 282
Period size: 75 Copynumber: 2.0 Consensus size: 75
747312 ATATATGATC
747322 CTCTTTAAACCATGTTTGGTACTGGTGTTGACCTTCTCTTTACTTGTGTTTGTTTCAGCTGTATC
1 CTCTTTAAACCATGTTTGGTACTGGTGTTGACCTTCTCTTTACTTGTGTTTGTTTCAGCTGTATC
* *
747387 CAGAAGTAGA
66 AAGAAATAGA
747397 CTCTTTAAACCATGTTTGGTACTGGTGTTGACCTTCTCTTTACTTGTGTTTGTTTCAGCTGTATC
1 CTCTTTAAACCATGTTTGGTACTGGTGTTGACCTTCTCTTTACTTGTGTTTGTTTCAGCTGTATC
747462 AAGAAATAGA
66 AAGAAATAGA
747472 GTCAAATCTT
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
75 73 1.00
ACGTcount: A:0.20, C:0.18, G:0.19, T:0.43
Consensus pattern (75 bp):
CTCTTTAAACCATGTTTGGTACTGGTGTTGACCTTCTCTTTACTTGTGTTTGTTTCAGCTGTATC
AAGAAATAGA
Found at i:747788 original size:3 final size:3
Alignment explanation
Indices: 747780--747808 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
747770 GAATGGTAGG
747780 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
747809 TTGTTACTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:750785 original size:3 final size:3
Alignment explanation
Indices: 750777--750801 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
750767 TCAATCCAAG
750777 CTT CTT CTT CTT CTT CTT CTT CTT C
1 CTT CTT CTT CTT CTT CTT CTT CTT C
750802 AGTGTTTGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (3 bp):
CTT
Found at i:751502 original size:8 final size:8
Alignment explanation
Indices: 751480--751547 Score: 54
Period size: 8 Copynumber: 8.8 Consensus size: 8
751470 TTTTTTATTT
751480 ATATTT-A
1 ATATTTAA
*
751487 ACATTTAA
1 ATATTTAA
751495 ATATTTAA
1 ATATTTAA
751503 ATATTTATA
1 ATATTTA-A
*
751512 TTTATTTAA
1 -ATATTTAA
751521 AT-TTTAA
1 ATATTTAA
* *
751528 AAAATTAA
1 ATATTTAA
751536 A-ATTT-A
1 ATATTTAA
751542 ATATTT
1 ATATTT
751548 TAAAATATAA
Statistics
Matches: 49, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
6 2 0.04
7 18 0.37
8 21 0.43
9 2 0.04
10 6 0.12
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.51
Consensus pattern (8 bp):
ATATTTAA
Found at i:751518 original size:33 final size:32
Alignment explanation
Indices: 751448--751547 Score: 85
Period size: 33 Copynumber: 3.0 Consensus size: 32
751438 TATTAAATAT
* ** *
751448 TTTAAATTATAAATTATTAAAATTTTTTATTTATA
1 TTTAAATTTTAAAAAATTAAAA-TTTATA-TT-TA
* *
751483 TTTAACA-TTTAAATATTTAAATATTTATATTTA
1 TTTAA-ATTTTAAAAAATTAAA-ATTTATATTTA
751516 TTTAAATTTTAAAAAATTAAAATTTAATATTT
1 TTTAAATTTTAAAAAATTAAAATTT-ATATTT
751548 TAAAATATAA
Statistics
Matches: 55, Mismatches: 6, Indels: 10
0.77 0.08 0.14
Matches are distributed among these distances:
32 5 0.09
33 25 0.45
34 2 0.04
35 21 0.38
36 2 0.04
ACGTcount: A:0.45, C:0.01, G:0.00, T:0.54
Consensus pattern (32 bp):
TTTAAATTTTAAAAAATTAAAATTTATATTTA
Found at i:751550 original size:15 final size:16
Alignment explanation
Indices: 751479--751558 Score: 67
Period size: 15 Copynumber: 5.1 Consensus size: 16
751469 ATTTTTTATT
*
751479 TATATTTAACATTTAA
1 TATATTTAAAATTTAA
751495 -ATATTTAAATATTTATA
1 TATATTTAAA-ATTTA-A
* *
751512 TTTATTTAAATTTTAA
1 TATATTTAAAATTTAA
* *
751528 -AAAATTAAAATTTAA
1 TATATTTAAAATTTAA
*
751543 TAT-TTTAAAATATAA
1 TATATTTAAAATTTAA
751558 T
1 T
751559 TTTAACTTTT
Statistics
Matches: 50, Mismatches: 10, Indels: 9
0.72 0.14 0.13
Matches are distributed among these distances:
15 30 0.60
16 7 0.14
17 5 0.10
18 8 0.16
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (16 bp):
TATATTTAAAATTTAA
Found at i:751562 original size:21 final size:21
Alignment explanation
Indices: 751515--751578 Score: 60
Period size: 21 Copynumber: 3.0 Consensus size: 21
751505 ATTTATATTT
*
751515 ATTTAA-ATTTTAAAAAATTAAA
1 ATTTAATATTTTAAAATA-T-AA
751537 ATTTAATATTTTAAAATATAA
1 ATTTAATATTTTAAAATATAA
* *
751558 TTTTAACT-TTTTAATATATAA
1 ATTTAA-TATTTTAAAATATAA
751579 CTATTAAAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
21 19 0.51
22 8 0.22
23 10 0.27
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (21 bp):
ATTTAATATTTTAAAATATAA
Found at i:752354 original size:16 final size:16
Alignment explanation
Indices: 752333--752375 Score: 50
Period size: 18 Copynumber: 2.6 Consensus size: 16
752323 TATTTATATA
752333 TATATAATTAATTTGT
1 TATATAATTAATTTGT
*
752349 TATATAAAATTAATTTTT
1 TATAT--AATTAATTTGT
*
752367 TAAATAATT
1 TATATAATT
752376 TATTATTACA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
16 9 0.39
18 14 0.61
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (16 bp):
TATATAATTAATTTGT
Found at i:752373 original size:18 final size:18
Alignment explanation
Indices: 752338--752373 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
752328 ATATATATAT
*
752338 AATTAATTTGTTATATAA
1 AATTAATTTGTTAAATAA
*
752356 AATTAATTTTTTAAATAA
1 AATTAATTTGTTAAATAA
752374 TTTATTATTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (18 bp):
AATTAATTTGTTAAATAA
Found at i:753071 original size:16 final size:15
Alignment explanation
Indices: 753044--753073 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
753034 ATGTTAATTT
753044 TATATTCTATTCTAC
1 TATATTCTATTCTAC
753059 TATATTGCTATTCTA
1 TATATT-CTATTCTA
753074 AGTATAACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.27, C:0.17, G:0.03, T:0.53
Consensus pattern (15 bp):
TATATTCTATTCTAC
Found at i:753555 original size:16 final size:16
Alignment explanation
Indices: 753520--753570 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
753510 TTAAATTCGG
*
753520 GTTTGGGTTCTCTCAG-
1 GTTTGGGTTCT-TTAGA
753536 GTTTGGGTTCTTTAGA
1 GTTTGGGTTCTTTAGA
* *
753552 GTTTGAGTTCTTTCGA
1 GTTTGGGTTCTTTAGA
753568 GTT
1 GTT
753571 CGAGCTTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
15 3 0.10
16 28 0.90
ACGTcount: A:0.10, C:0.12, G:0.29, T:0.49
Consensus pattern (16 bp):
GTTTGGGTTCTTTAGA
Found at i:753681 original size:6 final size:6
Alignment explanation
Indices: 753662--753700 Score: 62
Period size: 6 Copynumber: 6.7 Consensus size: 6
753652 GATCAAATCG
*
753662 AATTC- AATTTA AATTCA AATTCA AATTCA AATTCA AATT
1 AATTCA AATTCA AATTCA AATTCA AATTCA AATTCA AATT
753701 TTTTTAAACA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
5 4 0.13
6 27 0.87
ACGTcount: A:0.49, C:0.13, G:0.00, T:0.38
Consensus pattern (6 bp):
AATTCA
Found at i:755139 original size:28 final size:28
Alignment explanation
Indices: 755103--755167 Score: 71
Period size: 28 Copynumber: 2.3 Consensus size: 28
755093 TAAAATTATT
* *
755103 TTTATATTAATATTTATATATTT-TTATAA
1 TTTAAATTAAT-TTT-TAAATTTATTATAA
*
755132 -TTAAATTAATTTTTAAATTTATTTTAA
1 TTTAAATTAATTTTTAAATTTATTATAA
755159 TTTAAATTA
1 TTTAAATTA
755168 CCGTAACTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
26 6 0.19
27 8 0.26
28 17 0.55
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (28 bp):
TTTAAATTAATTTTTAAATTTATTATAA
Found at i:755548 original size:12 final size:12
Alignment explanation
Indices: 755529--755557 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
755519 ATTGTGCTTC
755529 AAAATTTTT-TT
1 AAAATTTTTATT
755540 AAAATTTTTATT
1 AAAATTTTTATT
755552 AAAATT
1 AAAATT
755558 AAAATTTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 9 0.53
12 8 0.47
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (12 bp):
AAAATTTTTATT
Found at i:755576 original size:17 final size:18
Alignment explanation
Indices: 755537--755576 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
755527 TCAAAATTTT
*
755537 TTTAAAATTTTTATTAAA
1 TTTAAAATTTTTATCAAA
*
755555 ATTAAAA-TTTTATCAAA
1 TTTAAAATTTTTATCAAA
755572 TTTAA
1 TTTAA
755577 TTTAACTCAC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
17 13 0.68
18 6 0.32
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (18 bp):
TTTAAAATTTTTATCAAA
Found at i:756373 original size:21 final size:21
Alignment explanation
Indices: 756335--756389 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
756325 TATTATTAAA
*
756335 AAATTAAA-ATAT-TATTTTT
1 AAATTAAATTTATATATTTTT
756354 --ATTAATATTTATATATTTTT
1 AAATTAA-ATTTATATATTTTT
756374 AAATTAAATTTATATA
1 AAATTAAATTTATATA
756390 AAAATTATTT
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
17 5 0.17
18 1 0.03
19 3 0.10
20 7 0.23
21 9 0.30
22 5 0.17
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (21 bp):
AAATTAAATTTATATATTTTT
Found at i:765779 original size:20 final size:20
Alignment explanation
Indices: 765756--765803 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
765746 TAAAATTAAG
765756 ATTTTAATTTTTTAATAAAT
1 ATTTTAATTTTTTAATAAAT
* * *
765776 ATTTCAAATTTTTAATATAT
1 ATTTTAATTTTTTAATAAAT
765796 ATTTTAAT
1 ATTTTAAT
765804 AAAGATTTCA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (20 bp):
ATTTTAATTTTTTAATAAAT
Found at i:765876 original size:14 final size:14
Alignment explanation
Indices: 765859--765893 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
765849 GCTTATAATA
*
765859 TTAATGTTATGTAT
1 TTAATATTATGTAT
765873 TTAATATTATGTAT
1 TTAATATTATGTAT
*
765887 TTGATAT
1 TTAATAT
765894 GATTTTAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.31, C:0.00, G:0.11, T:0.57
Consensus pattern (14 bp):
TTAATATTATGTAT
Found at i:771768 original size:160 final size:159
Alignment explanation
Indices: 771501--771789 Score: 434
Period size: 160 Copynumber: 1.8 Consensus size: 159
771491 CTAGACACTA
* * * * *
771501 TTTGAATCTGGTGTTCTTTAAAATCATTTAAGAAAGGTTTGATGAAGAAATCATATGAGGATTAT
1 TTTGAATCTGGTGTTCTTTAAAATCATCTAAGAAAAGTTTGATAAAGAAATCACATAAGGATTAT
** * * *
771566 ATGTTTACATTGAAAAGTTAGTTCCTAATCAAGAAGTGGAAGATATAATTATTAGTGAAGTTACA
66 AAATATACATTGAAAAGTTAGTTCCTAATCAAGAAATGGAAGATAAAATTATTAGTGAA-TTACA
771631 TTAGGATTATATGAAATCATCTAAGAAAAG
130 TTAGGATTATATGAAATCATCTAAGAAAAG
* * *
771661 TTTGAATCTGGTGTTCTTTGAAATCATCTAAGAAAAGTTTGATAAAGAAATTACGTAAGGATTAT
1 TTTGAATCTGGTGTTCTTTAAAATCATCTAAGAAAAGTTTGATAAAGAAATCACATAAGGATTAT
**
771726 AAATATACATTGTGAAGTTAGTTCCTAATCAAGAAATGGAAGATAAAATTATTAGTGAATTACA
66 AAATATACATTGAAAAGTTAGTTCCTAATCAAGAAATGGAAGATAAAATTATTAGTGAATTACA
771790 CACAAAACAA
Statistics
Matches: 114, Mismatches: 15, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
159 5 0.04
160 109 0.96
ACGTcount: A:0.40, C:0.07, G:0.18, T:0.35
Consensus pattern (159 bp):
TTTGAATCTGGTGTTCTTTAAAATCATCTAAGAAAAGTTTGATAAAGAAATCACATAAGGATTAT
AAATATACATTGAAAAGTTAGTTCCTAATCAAGAAATGGAAGATAAAATTATTAGTGAATTACAT
TAGGATTATATGAAATCATCTAAGAAAAG
Found at i:773298 original size:61 final size:60
Alignment explanation
Indices: 773203--773796 Score: 568
Period size: 55 Copynumber: 10.2 Consensus size: 60
773193 ATAAGGTGCA
* * **
773203 TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCATGTGGGCTTTGAAACGGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAA-GGAAAGGCG
* *
773264 TCCTGCTTTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAGGAAAGGCG
* *
773325 TCCTGCTCTTTGAGGACT-AGAAGGTGGCACCAACTTGTGTGGGCTTTGCAAAGGGAAA-GCA
1 TCCTGCTCTTTGAGGACTGA-AAGGTGCCACCAACTTGTGTGGGCTTTG-AAA-GGAAAGGCG
* * ** *
773386 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAATGTGAGGCA
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAGGCG
* * * * *
773446 TCCTGCTCTTTGAGGATTGGAAGGTACCACCAAATTGTGTGGGCTTTGCAAAGAGAAA-GCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-GAAAGGCG
* * * * *
773507 TCCTACTCTTTGAGAACTGGAAA-ATGCCACCAACTTGTGTGGG-TTT----TGAAAGGCA
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAGGCG
* * *
773562 TCCTACTCTTTGAGGACTGGGAA-GTGCCACCAACTTATGTGGGCTTT---A--AAAGGCG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAGGCG
* *
773617 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTT-----GAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAGGCG
* *
773672 TCCTACTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTT---A--AAAGGCG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAGGCG
* * *
773727 TCCTACTATTTGAGGACTGAAGGGTGCCACCAACTTGTGTGGGCTTT---A--AAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAGGCG
773782 TCCTGCTCTTTGAGG
1 TCCTGCTCTTTGAGG
773797 GCTAAAAAGT
Statistics
Matches: 465, Mismatches: 50, Indels: 42
0.83 0.09 0.08
Matches are distributed among these distances:
54 8 0.02
55 203 0.44
56 5 0.01
59 5 0.01
60 49 0.11
61 179 0.38
62 15 0.03
63 1 0.00
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (60 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAGGCG
Found at i:774787 original size:17 final size:16
Alignment explanation
Indices: 774767--774826 Score: 75
Period size: 18 Copynumber: 3.4 Consensus size: 16
774757 CTTCTTCTTC
774767 TTTTTTTCTTTTTTTTG
1 TTTTTTT-TTTTTTTTG
774784 TTTTTTTTTTTTTTTTG
1 -TTTTTTTTTTTTTTTG
774801 TTGTTGTTTTTTTTTTTGG
1 TT-TT-TTTTTTTTTTT-G
774820 TTTTTTT
1 TTTTTTT
774827 GAAAAAGAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
16 2 0.05
17 14 0.36
18 20 0.51
19 3 0.08
ACGTcount: A:0.00, C:0.02, G:0.10, T:0.88
Consensus pattern (16 bp):
TTTTTTTTTTTTTTTG
Found at i:774792 original size:20 final size:21
Alignment explanation
Indices: 774767--774817 Score: 79
Period size: 19 Copynumber: 2.5 Consensus size: 21
774757 CTTCTTCTTC
*
774767 TTTTTTTCTTTTTT-TTGTT-
1 TTTTTTTTTTTTTTGTTGTTG
774786 TTTTTTTTTTTTTTGTTGTTG
1 TTTTTTTTTTTTTTGTTGTTG
774807 TTTTTTTTTTT
1 TTTTTTTTTTT
774818 GGTTTTTTTG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 13 0.45
20 5 0.17
21 11 0.38
ACGTcount: A:0.00, C:0.02, G:0.08, T:0.90
Consensus pattern (21 bp):
TTTTTTTTTTTTTTGTTGTTG
Found at i:774826 original size:1 final size:1
Alignment explanation
Indices: 774767--774817 Score: 57
Period size: 1 Copynumber: 51.0 Consensus size: 1
774757 CTTCTTCTTC
* * * * *
774767 TTTTTTTCTTTTTTTTGTTTTTTTTTTTTTTTTGTTGTTGTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
774818 GGTTTTTTTG
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
1 40 1.00
ACGTcount: A:0.00, C:0.02, G:0.08, T:0.90
Consensus pattern (1 bp):
T
Found at i:787337 original size:79 final size:79
Alignment explanation
Indices: 787236--787801 Score: 571
Period size: 79 Copynumber: 7.2 Consensus size: 79
787226 AATAACGGGG
* * * * * * **
787236 TTGGAGTATCCCCTTGAAAATAACGAGGTTGGAGTATCTCCGGTTGTGAAAAATCGATGA-TTAA
1 TTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTAAT-ATTTAA
787300 GAAATAAAATCAGGA
65 GAAATAAAATCAGGA
* * *
787315 TTTGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTAA
1 TTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTAATA-TTTAA
* *
787380 -AAATAAAATCGGGG
65 GAAATAAAATCAGGA
* *
787394 TTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTAT-AAGAAATTAATATTTTA
1 TTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATTATGAA-AAATTAATATTTAA
* * *
787458 GAAATAAAACCGGGG
65 GAAATAAAATCAGGA
* * **
787473 TTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCTCCGATTGTGAAAAATCGATGATTT-A
1 TTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTAAT-ATTTAA
787537 GAAATAAAATC-GAGA
65 GAAATAAAATCAG-GA
* * * *
787552 TTAGAGTATCCCCTCGGAAATAACAGGGTTGAAGTATCCCCGATTATGAGAAATTAATATTTTAA
1 TTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTAATA-TTTAA
787617 -AAATAAAATCGAGG-
65 GAAATAAAATC-AGGA
* * * * *
787631 TTTGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCTCTGATTATGAGAAATTAATATTTTAG
1 TTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTAATATTTAAG
* *
787696 AAATAAAA-CTGGGG
66 AAATAAAATC-AGGA
** * ** *
787710 TTGGAGTAT-CCCT--GATGTTTAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTT
1 TTGGAGTATCCCCTCGGA--AATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTAAT-ATTT
**
787772 TGGAAATAAAATC-GGA
63 AAGAAATAAAATCAGGA
787788 GTTGGAGTATCCCC
1 -TTGGAGTATCCCC
787802 GATTATAGAA
Statistics
Matches: 414, Mismatches: 54, Indels: 37
0.82 0.11 0.07
Matches are distributed among these distances:
76 2 0.00
78 53 0.13
79 342 0.83
80 16 0.04
81 1 0.00
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.29
Consensus pattern (79 bp):
TTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTAATATTTAAG
AAATAAAATCAGGA
Found at i:787625 original size:237 final size:236
Alignment explanation
Indices: 787204--787801 Score: 855
Period size: 237 Copynumber: 2.5 Consensus size: 236
787194 TGTACCGATG
* * * *
787204 AGAAATTTAATATTTTGGAGATAATAA-CGGGGTTGGAGTATCCCCTTGAAAATAACGAGGTTGG
1 AGAAA-TTAATATTTTAGAAATAA-AACCGGGGTTGGAGTATCCCC-TGGAAATAACGGGGTTGG
* * *
787268 AGTATCTCCGGTTGTGAAAAATCGATGATTAAGAAATAAAATC-AGGATTTGAGTATCCCCTCAG
63 AGTATCTCCGATTGTGAAAAATCGATGATTTAGAAATAAAATCGA-GATTAGAGTATCCCCTCAG
* * *
787332 AAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTAAAAATAAAATCGGGGTTG
127 AAATAACAGGGTTGAAGTATCCCCGATTATGAGAAATTAATATTTTAAAAATAAAATCGAGGTTG
787397 GAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATA
192 GAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATA
787442 AGAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAG
1 AGAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTATCCCCT-GGAAATAACGGGGTTGGAG
*
787507 TATCTCCGATTGTGAAAAATCGATGATTTAGAAATAAAATCGAGATTAGAGTATCCCCTCGGAAA
65 TATCTCCGATTGTGAAAAATCGATGATTTAGAAATAAAATCGAGATTAGAGTATCCCCTCAGAAA
*
787572 TAACAGGGTTGAAGTATCCCCGATTATGAGAAATTAATATTTTAAAAATAAAATCGAGGTTTGAG
130 TAACAGGGTTGAAGTATCCCCGATTATGAGAAATTAATATTTTAAAAATAAAATCGAGGTTGGAG
* * * *
787637 TATCCCCTCGGAAATAACGGGGTTGGAGTATCTCTGATTATG
195 TATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATA
* **
787679 AGAAATTAATATTTTAGAAATAAAACTGGGGTTGGAGTAT-CCCT-GATGTTTAACGGGGTTGGA
1 AGAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTGGA--AATAACGGGGTTGGA
* * * * * *
787742 GTATCCCCGATTGTGAAAAATTGGTGTTTTTGGAAATAAAATCG-GAGTTGGAGTATCCCC
64 GTATCTCCGATTGTGAAAAATCGATG-ATTTAGAAATAAAATCGAGA-TTAGAGTATCCCC
787802 GATTATAGAA
Statistics
Matches: 328, Mismatches: 25, Indels: 15
0.89 0.07 0.04
Matches are distributed among these distances:
234 2 0.01
236 45 0.14
237 275 0.84
238 6 0.02
ACGTcount: A:0.34, C:0.13, G:0.24, T:0.29
Consensus pattern (236 bp):
AGAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTGGAAATAACGGGGTTGGAGT
ATCTCCGATTGTGAAAAATCGATGATTTAGAAATAAAATCGAGATTAGAGTATCCCCTCAGAAAT
AACAGGGTTGAAGTATCCCCGATTATGAGAAATTAATATTTTAAAAATAAAATCGAGGTTGGAGT
ATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATA
Found at i:787779 original size:158 final size:158
Alignment explanation
Indices: 787201--787801 Score: 707
Period size: 158 Copynumber: 3.8 Consensus size: 158
787191 ATATGTACCG
* * * *
787201 ATGAGAAATTTAATATTTTGGAGATAATAA-CGGGGTTGGAGTATCCCCTTGAAAATAACGAGGT
1 ATGAGAAA-TTAATATTTTAGAAATAA-AATCGGGGTTGGAGTATCCCCTCGAAAATAACGGGGT
* * * ** * *
787265 TGGAGTATCTCCGGTTGTGAAAAATCGATGA-TTAAGAAATAAAATC-AGGATTTGAGTATCCCC
64 TGGAGTATCCCCGATTATGAAAAATTAAT-ATTTTAGAAATAAAATCGAGG-TTGGAGTATCCCC
* *
787328 TCAGAAATAACGGGGTTGGAGTATCCCCGATT
127 TCGGAAATAACGGGGTTGGAGTATCTCCGATT
*
787360 ATGAGAAATTAATATTTTAAAAATAAAATCGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTG
1 ATGAGAAATTAATATTTTAGAAATAAAATCGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTG
* *
787425 GAGTATCCCCGATTAT-AAGAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCG
66 GAGTATCCCCGATTATGAA-AAATTAATATTTTAGAAATAAAATCGAGGTTGGAGTATCCCCTCG
787489 GAAATAACGGGGTTGGAGTATCTCCGATT
130 GAAATAACGGGGTTGGAGTATCTCCGATT
* * ** * * * * *
787518 GTGAAAAATCGATGA-TTTAGAAATAAAATCGAGATTAGAGTATCCCCTCGGAAATAACAGGGTT
1 ATGAGAAATTAAT-ATTTTAGAAATAAAATCGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTT
* * * *
787582 GAAGTATCCCCGATTATGAGAAATTAATATTTTAAAAATAAAATCGAGGTTTGAGTATCCCCTCG
65 GGAGTATCCCCGATTATGAAAAATTAATATTTTAGAAATAAAATCGAGGTTGGAGTATCCCCTCG
*
787647 GAAATAACGGGGTTGGAGTATCTCTGATT
130 GAAATAACGGGGTTGGAGTATCTCCGATT
***
787676 ATGAGAAATTAATATTTTAGAAATAAAA-CTGGGGTTGGAGTAT-CCCT-GATGTTTAACGGGGT
1 ATGAGAAATTAATATTTTAGAAATAAAATC-GGGGTTGGAGTATCCCCTCGA-AAATAACGGGGT
* ** * *
787738 TGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTTGGAAATAAAATCG-GAGTTGGAGTATCCCC
64 TGGAGTATCCCCGATTATGAAAAATTAAT-ATTTTAGAAATAAAATCGAG-GTTGGAGTATCCCC
787802 GATTATAGAA
Statistics
Matches: 377, Mismatches: 54, Indels: 23
0.83 0.12 0.05
Matches are distributed among these distances:
156 1 0.00
157 44 0.12
158 320 0.85
159 12 0.03
ACGTcount: A:0.34, C:0.13, G:0.24, T:0.29
Consensus pattern (158 bp):
ATGAGAAATTAATATTTTAGAAATAAAATCGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTG
GAGTATCCCCGATTATGAAAAATTAATATTTTAGAAATAAAATCGAGGTTGGAGTATCCCCTCGG
AAATAACGGGGTTGGAGTATCTCCGATT
Found at i:787865 original size:51 final size:52
Alignment explanation
Indices: 787732--787867 Score: 197
Period size: 51 Copynumber: 2.6 Consensus size: 52
787722 TGATGTTTAA
* * *
787732 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTTGGAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTTGAAAATAAAAC
*
787784 CGGAGTTGGAGTATCCCCGATTAT-AGAAAATTGGTG-TTTTGAAAATAAAAC
1 CGGGGTTGGAGTATCCCCGATTATGA-AAAATTGGTGTTTTTGAAAATAAAAC
787835 CGGGGTTGGAGTA-CCTCCGATTATGAAAAATTG
1 CGGGGTTGGAGTATCC-CCGATTATGAAAAATTG
787868 AGAAACTTAA
Statistics
Matches: 76, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
50 2 0.03
51 41 0.54
52 33 0.43
ACGTcount: A:0.31, C:0.12, G:0.27, T:0.30
Consensus pattern (52 bp):
CGGGGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTTGAAAATAAAAC
Found at i:790399 original size:21 final size:21
Alignment explanation
Indices: 790358--790399 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
790348 GTTGGGACCT
*
790358 TGTATCGATACATTTTAACAA
1 TGTATCGATACATTTGAACAA
*
790379 TGTATCGATACATTTGGACAA
1 TGTATCGATACATTTGAACAA
790400 AAATGTGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (21 bp):
TGTATCGATACATTTGAACAA
Found at i:791183 original size:92 final size:93
Alignment explanation
Indices: 791086--791264 Score: 227
Period size: 94 Copynumber: 1.9 Consensus size: 93
791076 ACTGTGATAT
* * *
791086 TTATAATCAATCAACTTTTC-AGCTTTTCTATCAAAAAG-AATCTGATTCTCAAATATAATTTAT
1 TTATAATCAACCAACTTTTCTAGCTTTTCTA-CAAAAAGAAATCTGATTCTCAAATACAATTCAT
*
791149 GCATTAGTCTAATCTTTGCAGTGTCATAC
65 GCATTAGTCTAATCCTTGCAGTGTCATAC
* ** * * **
791178 TTATAATTAACCAACTTTTCTTTTCTTTTTTACCAAAAGAAATCTGATTCTCATGTACAATTCAT
1 TTATAATCAACCAACTTTTC-TAGCTTTTCTACAAAAAGAAATCTGATTCTCAAATACAATTCAT
791243 GCATTAGTCTAATCCTTGCAGT
65 GCATTAGTCTAATCCTTGCAGT
791265 CTTTCTTTTT
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
92 18 0.25
93 6 0.08
94 49 0.67
ACGTcount: A:0.32, C:0.18, G:0.08, T:0.41
Consensus pattern (93 bp):
TTATAATCAACCAACTTTTCTAGCTTTTCTACAAAAAGAAATCTGATTCTCAAATACAATTCATG
CATTAGTCTAATCCTTGCAGTGTCATAC
Found at i:791315 original size:70 final size:70
Alignment explanation
Indices: 791212--791475 Score: 383
Period size: 70 Copynumber: 3.8 Consensus size: 70
791202 CTTTTTTACC
*
791212 AAAAGAAATCTGATTCTCATG-TACAATTCATGCATTAGTCTAATCCTTGCAGTCTTTCTTTTTT
1 AAAAG-AATCTGATTCTCA-GATATAATTCATGCATTAGTCTAATCCTTGCAGTCTTTCTTTTTT
791276 CTTATAA
64 CTTATAA
* * *
791283 AAAAGAATCTGATTCTCAGATATAATTAATGCATTAGTCTAATCCTTGCAGCCTTTCTTTTTTCC
1 AAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCCTTGCAGTCTTTCTTTTTTCT
791348 TATAA
66 TATAA
* *
791353 AAAAGAACCTGATTCTC-GATATAATTCATGCATTAATCTAATCCTTGCAGTCTTTCTTTTTT-T
1 AAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCCTTGCAGTCTTTCTTTTTTCT
791416 TAATAA
66 T-ATAA
* * *
791422 AAAAGAATAC-AATTCTCAGATATAATTCATGCATTAGTCTAATCTTTGCGGTCT
1 AAAAGAAT-CTGATTCTCAGATATAATTCATGCATTAGTCTAATCCTTGCAGTCT
791476 GACATTTACA
Statistics
Matches: 175, Mismatches: 14, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
68 1 0.01
69 60 0.34
70 109 0.62
71 5 0.03
ACGTcount: A:0.32, C:0.18, G:0.10, T:0.40
Consensus pattern (70 bp):
AAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCCTTGCAGTCTTTCTTTTTTCT
TATAA
Found at i:791507 original size:92 final size:91
Alignment explanation
Indices: 791400--791659 Score: 389
Period size: 92 Copynumber: 2.8 Consensus size: 91
791390 CTAATCCTTG
*
791400 CAGTCTTTCTTTTTTT-TAATAAAAAAGAATACAATTCTCAGATATAATTCATGCATTAGTCTAA
1 CAGTCTTTCTTTTTTTCT-ATAAAAAAGAAT-CGATTCTCAGATATAATTCATGCATTAGTCTAA
791464 TCTTTGCGGTCTGACATTTACAATCAAT
64 TCTTTGCGGTCTGACATTTACAATCAAT
* * * *
791492 TAGTCTTCCTTTTTTTCTATAAAAAAGAATTTGATTCTCAAATATAATTCATGCATTAGTCTAAT
1 CAGTCTTTCTTTTTTTCTATAAAAAAGAA-TCGATTCTCAGATATAATTCATGCATTAGTCTAAT
* **
791557 CCTTGTAGTCTGACATTTACAATCAAT
65 CTTTGCGGTCTGACATTTACAATCAAT
791584 CAGTCTTTCTTTTTTTCTATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAAT
1 CAGTCTTTCTTTTTTTCTATAAAAAAGAATC-GATTCTCAGATATAATTCATGCATTAGTCTAAT
791649 -TCTTGCGGTCT
65 CT-TTGCGGTCT
791660 TTCTTTTTTC
Statistics
Matches: 149, Mismatches: 15, Indels: 8
0.87 0.09 0.05
Matches are distributed among these distances:
91 1 0.01
92 146 0.98
93 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.10, T:0.42
Consensus pattern (91 bp):
CAGTCTTTCTTTTTTTCTATAAAAAAGAATCGATTCTCAGATATAATTCATGCATTAGTCTAATC
TTTGCGGTCTGACATTTACAATCAAT
Found at i:791708 original size:67 final size:69
Alignment explanation
Indices: 791586--791721 Score: 197
Period size: 67 Copynumber: 2.0 Consensus size: 69
791576 CAATCAATCA
* * * *
791586 GTCTTTCTTTTTTTCTATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATTC
1 GTCTTTCTTTTTTCCTATAAAAAAGAATCT-ATTCTCAAATATAATTCATGCATTAATCTAATCC
791651 TTGCG
65 TTGCG
791656 GTCTTTCTTTTTTCCTAT-AAAAA-AATC-ATTTCTCAAATATAATTCATGCATTAATCTAATCC
1 GTCTTTCTTTTTTCCTATAAAAAAGAATCTA-TTCTCAAATATAATTCATGCATTAATCTAATCC
791718 TTGC
65 TTGC
791722 AGCCTGACAT
Statistics
Matches: 61, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
66 1 0.02
67 34 0.56
68 4 0.07
69 5 0.08
70 17 0.28
ACGTcount: A:0.30, C:0.18, G:0.08, T:0.44
Consensus pattern (69 bp):
GTCTTTCTTTTTTCCTATAAAAAAGAATCTATTCTCAAATATAATTCATGCATTAATCTAATCCT
TGCG
Found at i:791714 original size:159 final size:159
Alignment explanation
Indices: 791526--791812 Score: 493
Period size: 159 Copynumber: 1.8 Consensus size: 159
791516 AAGAATTTGA
* * *
791526 TTCTCAAATATAATTCATGCATTAGTCTAATCCTTGTAGTCTGACATTTACAATCAATCAGTCTT
1 TTCTCAAATATAATTCATGCATTAATCTAATCCTTGCAGCCTGACATTTACAATCAATCAGTCTT
* *
791591 TCTTTTTTTCTATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATTCTTGCG
66 TCTTTTTTTCTATAAAAAAGAATCCGATTCTCAGATATAATTCATGCATTAGTCTAATCCTTGCG
791656 GTCTTTCTTTTTTCCTATAAAAAAATCAT
131 GTCTTTCTTTTTTCCTATAAAAAAATCAT
*
791685 TTCTCAAATATAATTCATGCATTAATCTAATCCTTGCAGCCTGACATTTGCAATCAATCAGTCTT
1 TTCTCAAATATAATTCATGCATTAATCTAATCCTTGCAGCCTGACATTTACAATCAATCAGTCTT
* * *
791750 TCTTTTTTTCTATAAAAAAGAATCCGATTGTCAGATATAATTTATGTATTAGTCTAATCCTTG
66 TCTTTTTTTCTATAAAAAAGAATCCGATTCTCAGATATAATTCATGCATTAGTCTAATCCTTG
791813 TAGTCTAACA
Statistics
Matches: 119, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
159 119 1.00
ACGTcount: A:0.31, C:0.18, G:0.09, T:0.42
Consensus pattern (159 bp):
TTCTCAAATATAATTCATGCATTAATCTAATCCTTGCAGCCTGACATTTACAATCAATCAGTCTT
TCTTTTTTTCTATAAAAAAGAATCCGATTCTCAGATATAATTCATGCATTAGTCTAATCCTTGCG
GTCTTTCTTTTTTCCTATAAAAAAATCAT
Found at i:791790 original size:251 final size:253
Alignment explanation
Indices: 791335--791900 Score: 833
Period size: 251 Copynumber: 2.3 Consensus size: 253
791325 TCCTTGCAGC
* * *
791335 CTTTCTTTTTTCCTATAAAAAAGAACCTGATTCTC-GATATAATTCATGCATTAATCTAATCCTT
1 CTTTCTTTTTTTCTATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCCTT
* * *
791399 GCAGTCTTTCTTTTTTTTAATAAAAAAGAATACAATTCTCAGATATAATTCATGCATTAGTCTAA
66 GCAGTCTTTCTTTTTTCTAATAAAAAAGAATACAATTCTCAAATATAATTCATGCATTAATCTAA
* * * * **
791464 TCTTTGCGGTCTGACATTTACAATCAATTAGTCTTCCTTTTTTTCTATAAAAAAGAATTTGATTC
131 TCCTTGCAGCCTGACATTTACAATCAATCAGTCTTCCTTTTTTTCTATAAAAAAGAATCCGATTC
* *
791529 TCAAATATAATTCATGCATTAGTCTAATCCTTGTAGTCTGACATTTACAATCAATCAGT
196 TCAAATATAATTCATGCATTAGTCTAATCCTTGTAGTCTAACATTTACAATCAATCA-A
*
791588 CTTTCTTTTTTTCTATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATTCTT
1 CTTTCTTTTTTTCTATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCCTT
* *
791653 GCGGTCTTTCTTTTTTCCT-AT-AAAAA-AAT-CATTTCTCAAATATAATTCATGCATTAATCTA
66 GCAGTCTTTCTTTTTT-CTAATAAAAAAGAATACAATTCTCAAATATAATTCATGCATTAATCTA
* *
791714 ATCCTTGCAGCCTGACATTTGCAATCAATCAGTCTTTCTTTTTTTCTATAAAAAAGAATCCGATT
130 ATCCTTGCAGCCTGACATTTACAATCAATCAGTCTTCCTTTTTTTCTATAAAAAAGAATCCGATT
* * * * *
791779 GTCAGATATAATTTATGTATTAGTCTAATCCTTGTAGTCTAACATTTACAATCAGTCAA
195 CTCAAATATAATTCATGCATTAGTCTAATCCTTGTAGTCTAACATTTACAATCAATCAA
*
791838 C--T-TTTTTTTCTATAAAAAAGAATCTGATTCTCAGCTATAATTCATGCATTAGTCTAATCCTT
1 CTTTCTTTTTTTCTATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCCTT
791900 G
66 G
791901 TCGTCTAACA
Statistics
Matches: 285, Mismatches: 26, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
247 59 0.21
248 1 0.00
250 1 0.00
251 138 0.48
252 3 0.01
253 38 0.13
254 44 0.15
255 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.09, T:0.42
Consensus pattern (253 bp):
CTTTCTTTTTTTCTATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCCTT
GCAGTCTTTCTTTTTTCTAATAAAAAAGAATACAATTCTCAAATATAATTCATGCATTAATCTAA
TCCTTGCAGCCTGACATTTACAATCAATCAGTCTTCCTTTTTTTCTATAAAAAAGAATCCGATTC
TCAAATATAATTCATGCATTAGTCTAATCCTTGTAGTCTAACATTTACAATCAATCAA
Found at i:792004 original size:91 final size:92
Alignment explanation
Indices: 791659--792029 Score: 431
Period size: 88 Copynumber: 4.1 Consensus size: 92
791649 TCTTGCGGTC
* * *
791659 TTTCTTTTTTCCTAT-AAAAA-AATC--ATTTCTCAAATATAATTCATGCATTAATCTAATCCTT
1 TTTCTTTTTTTCTATAAAAAAGAATCTGA-TTCTCAGATATAATTCATGCATTAGTCTAATCCTT
* * * *
791720 GCAGCCTGACATTTGCAATCAATC-AGT
65 GCAGTCTAACATTTACAATCAATCAACT
* * * *
791747 CTTTCTTTTTTTCTATAAAAAAGAATCCGATTGTCAGATATAATTTATGTATTAGTCTAATCCTT
1 -TTTCTTTTTTTCTATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCCTT
* *
791812 GTAGTCTAACATTTACAATCAGTCAAC-
65 GCAGTCTAACATTTACAATCAATCAACT
*
791839 --T-TTTTTTTCTATAAAAAAGAATCTGATTCTCAGCTATAATTCATGCATTAGTCTAATCCTTG
1 TTTCTTTTTTTCTATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCCTTG
* *
791901 TC-GTCTAACATTTACAATCAGTGAACT
66 -CAGTCTAACATTTACAATCAATCAACT
* * * * *
791928 TTTTTTTTTTTCTATAAAATATAAT-TGATTCTCAGATATAATTCATGAATTAGTCTAATTCTTG
1 TTTCTTTTTTTCTATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCCTTG
**
791992 CAGTCTCCCATTTACAATCAATCAACT
66 CAGTCTAACATTTACAATCAATCAACT
792019 TTTCTTTTTTT
1 TTTCTTTTTTT
792030 AAACAGAATC
Statistics
Matches: 242, Mismatches: 29, Indels: 20
0.83 0.10 0.07
Matches are distributed among these distances:
88 79 0.33
89 15 0.06
90 6 0.02
91 72 0.30
92 68 0.28
93 2 0.01
ACGTcount: A:0.31, C:0.18, G:0.08, T:0.43
Consensus pattern (92 bp):
TTTCTTTTTTTCTATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCCTTG
CAGTCTAACATTTACAATCAATCAACT
Found at i:792011 original size:179 final size:181
Alignment explanation
Indices: 791693--792026 Score: 451
Period size: 180 Copynumber: 1.9 Consensus size: 181
791683 ATTTCTCAAA
* * * *
791693 TATAATTCATGCATTAATCTAATCCTTGCAGCCTGACATTTGCAATCAATCAGTCTTTCTTTTTT
1 TATAATTCATGCATTAATCTAATCCTTGCAGCCTAACATTTACAATCAATAACTCTTTCTTTTTT
* * * *
791758 TCTATAAAAAAGAATCCGATTGTCAGATATAATTTATGTATTAGTCTAATCCTTGTAGTCTAACA
66 TCTATAAAAAAGAATCCGATTCTCAGATATAATTCATGAATTAGTCTAATCCTTGCAGTCTAACA
*
791823 TTTACAATCAGTCAACTTTT-TTTTCTATAAAAAAGAATCTGATTCTCAGC
131 TTTACAATCAATCAACTTTTCTTTTCTATAAAAAAGAATCTGATTCTCAGC
* * * *
791873 TATAATTCATGCATTAGTCTAATCCTTGTC-GTCTAACATTTACAATCAGTGAACT-TTTTTTTT
1 TATAATTCATGCATTAATCTAATCCTTG-CAGCCTAACATTTACAATCAAT-AACTCTTTCTTTT
* * * * **
791936 TTTCTATAAAATATAAT-TGATTCTCAGATATAATTCATGAATTAGTCTAATTCTTGCAGTCTCC
64 TTTCTATAAAAAAGAATCCGATTCTCAGATATAATTCATGAATTAGTCTAATCCTTGCAGTCTAA
792000 CATTTACAATCAATCAACTTTTCTTTT
129 CATTTACAATCAATCAACTTTTCTTTT
792027 TTTAAACAGA
Statistics
Matches: 132, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
179 60 0.45
180 69 0.52
181 3 0.02
ACGTcount: A:0.31, C:0.18, G:0.09, T:0.42
Consensus pattern (181 bp):
TATAATTCATGCATTAATCTAATCCTTGCAGCCTAACATTTACAATCAATAACTCTTTCTTTTTT
TCTATAAAAAAGAATCCGATTCTCAGATATAATTCATGAATTAGTCTAATCCTTGCAGTCTAACA
TTTACAATCAATCAACTTTTCTTTTCTATAAAAAAGAATCTGATTCTCAGC
Found at i:792625 original size:10 final size:9
Alignment explanation
Indices: 792598--792623 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
792588 ATTAATTAAA
792598 TTTAAAAAT
1 TTTAAAAAT
792607 TTTAAAAAT
1 TTTAAAAAT
792616 TTTAAAAA
1 TTTAAAAA
792624 ATAATAATGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (9 bp):
TTTAAAAAT
Found at i:792834 original size:19 final size:18
Alignment explanation
Indices: 792775--792834 Score: 50
Period size: 20 Copynumber: 3.3 Consensus size: 18
792765 TGTTTAATAA
* *
792775 AATTAAAAA-CAATATTT
1 AATTAAAAATTAAAATTT
** *
792792 AATTAAATTTTAAAAATT
1 AATTAAAAATTAAAATTT
792810 ACATTAACAAATTAAAATTT
1 A-ATTAA-AAATTAAAATTT
792830 AATTA
1 AATTA
792835 TTATGTTTTT
Statistics
Matches: 32, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
17 7 0.22
18 6 0.19
19 9 0.28
20 10 0.31
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (18 bp):
AATTAAAAATTAAAATTT
Found at i:792944 original size:122 final size:123
Alignment explanation
Indices: 792654--792997 Score: 366
Period size: 124 Copynumber: 2.9 Consensus size: 123
792644 ATTTTTAGTA
*
792654 AAAAATAATA-TTAATTAACTTTAAAGAAATTTATATTAACAAATTAAAATATTAATTA-T-T-T
1 AAAAATAATATTTAATTAACTTT-AA-AAATTTACATTAACAAATTAAAAT-TTAATTATTATGT
* *
792715 TTTTATAATAAA-AAAT--TTTAAATAAAAATAAAAAGGGTTTATTATTATTTTGTTTAATAAAA
63 TTTTATAA-AAATAAATAATTT---T-AAAATAAAAA-GGTTTTTTATTATATTGTTTAATAAAA
792777 TT
122 TT
* *
792779 AAAAACAATATTTAATTAAATTTTAAAAA-TTACATTAACAAATTAAAATTTAATTATTATGTTT
1 AAAAATAATATTTAATT-AACTTTAAAAATTTACATTAACAAATTAAAATTTAATTATTATGTTT
792843 TTATAAAAATAAATAATTTTAAAATAAAAAGGTTTTTTATTATAATTG-TTAATAAAA-T
65 TTATAAAAATAAATAATTTTAAAATAAAAAGGTTTTTTATTAT-ATTGTTTAATAAAATT
* *
792901 AAAAATAATATTTAATTTAGTTTAAAAATTTACATTAACAAATT---A---AATTATTATG-TTT
1 AAAAATAATATTTAATTAACTTTAAAAATTTACATTAACAAATTAAAATTTAATTATTATGTTTT
* * *
792959 T-TAAAAATAAAAAAATTTAAATTAAAAA-GTTTTTTATTA
66 TATAAAAATAAATAATTTTAAAATAAAAAGGTTTTTTATTA
792998 GAATAATTTT
Statistics
Matches: 198, Mismatches: 11, Indels: 32
0.82 0.05 0.13
Matches are distributed among these distances:
113 11 0.06
114 24 0.12
115 4 0.02
116 10 0.05
119 1 0.01
121 9 0.05
122 32 0.16
123 28 0.14
124 33 0.17
125 17 0.09
126 21 0.11
127 5 0.03
128 3 0.02
ACGTcount: A:0.51, C:0.02, G:0.03, T:0.43
Consensus pattern (123 bp):
AAAAATAATATTTAATTAACTTTAAAAATTTACATTAACAAATTAAAATTTAATTATTATGTTTT
TATAAAAATAAATAATTTTAAAATAAAAAGGTTTTTTATTATATTGTTTAATAAAATT
Found at i:793341 original size:23 final size:24
Alignment explanation
Indices: 793270--793350 Score: 71
Period size: 23 Copynumber: 3.5 Consensus size: 24
793260 GAATAGAGGG
*
793270 TTTTTT-ATTTGAATAATGATAAAT
1 TTTTTTAATTTG-TTAATGATAAAT
** *
793294 TTTTTTAATTCCTTAAATGCT--AT
1 TTTTTTAATTTGTT-AATGATAAAT
793317 TTTTTTAATTTGTTAATG-TAAAT
1 TTTTTTAATTTGTTAATGATAAAT
*
793340 TTTTTAAATTT
1 TTTTTTAATTT
793351 AATTAAATAT
Statistics
Matches: 46, Mismatches: 7, Indels: 9
0.74 0.11 0.15
Matches are distributed among these distances:
21 1 0.02
22 4 0.09
23 26 0.57
24 7 0.15
25 8 0.17
ACGTcount: A:0.31, C:0.04, G:0.06, T:0.59
Consensus pattern (24 bp):
TTTTTTAATTTGTTAATGATAAAT
Found at i:793401 original size:34 final size:34
Alignment explanation
Indices: 793362--793449 Score: 142
Period size: 34 Copynumber: 2.6 Consensus size: 34
793352 ATTAAATATC
793362 ATTTTTTATTTTATTAAAAATAATAATAAAAAAT
1 ATTTTTTATTTTATTAAAAATAATAATAAAAAAT
* *
793396 ATTTTTTATTTTATTGAAAATAATAGTAAAAAAT
1 ATTTTTTATTTTATTAAAAATAATAATAAAAAAT
793430 ATTTTTTATTTT-TATAAAAA
1 ATTTTTTATTTTAT-TAAAAA
793450 CATATAATTA
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
33 1 0.02
34 49 0.98
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (34 bp):
ATTTTTTATTTTATTAAAAATAATAATAAAAAAT
Found at i:793612 original size:21 final size:22
Alignment explanation
Indices: 793579--793627 Score: 66
Period size: 21 Copynumber: 2.2 Consensus size: 22
793569 ATAATTAATA
793579 TTTTAAATTATTAATGTAAA-ATT
1 TTTTAAA-TATTAAT-TAAATATT
793602 TTTTAAA-ATTAATTAAATATT
1 TTTTAAATATTAATTAAATATT
793623 TTTTA
1 TTTTA
793628 TTATAAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.16
21 14 0.56
23 7 0.28
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (22 bp):
TTTTAAATATTAATTAAATATT
Found at i:793804 original size:14 final size:14
Alignment explanation
Indices: 793785--793825 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
793775 GTATTCGTAA
793785 AAAAAATTTATTTT
1 AAAAAATTTATTTT
*
793799 AAAAAATATT-TTAT
1 AAAAAAT-TTATTTT
793813 AAAAAATTTATTT
1 AAAAAATTTATTT
793826 ATGAAATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
13 2 0.09
14 19 0.83
15 2 0.09
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (14 bp):
AAAAAATTTATTTT
Found at i:795153 original size:11 final size:11
Alignment explanation
Indices: 795128--795159 Score: 55
Period size: 11 Copynumber: 2.8 Consensus size: 11
795118 ATAAAATTTT
795128 AATTTTAATAAA
1 AATTTTAA-AAA
795140 AATTTTAAAAA
1 AATTTTAAAAA
795151 AATTTTAAA
1 AATTTTAAA
795160 GCACAATTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 12 0.60
12 8 0.40
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (11 bp):
AATTTTAAAAA
Found at i:795570 original size:28 final size:28
Alignment explanation
Indices: 795518--795582 Score: 71
Period size: 28 Copynumber: 2.3 Consensus size: 28
795508 ATAGTTACGG
*
795518 TAATTTAAATTAAAATAAATTTAAAAAT
1 TAATTTAAATTAAAATAAATATAAAAAT
*
795546 TAATTT-AATTATAAA-AATATATAAATAT
1 TAATTTAAATTA-AAATAA-ATATAAAAAT
*
795574 TAATATAAA
1 TAATTTAAA
795583 AATAATTTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
27 7 0.23
28 22 0.71
29 2 0.06
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (28 bp):
TAATTTAAATTAAAATAAATATAAAAAT
Found at i:797082 original size:16 final size:16
Alignment explanation
Indices: 797063--797113 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
797053 AGACAACTTG
*
797063 AACCTGAGAAAGCTCA
1 AACCTGAAAAAGCTCA
* *
797079 AACCCGAAAAAGCTCG
1 AACCTGAAAAAGCTCA
797095 AACCTGAAAGAA-CTCA
1 AACCTGAAA-AAGCTCA
797111 AAC
1 AAC
797114 TCGAAAGGAC
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
16 27 0.93
17 2 0.07
ACGTcount: A:0.47, C:0.27, G:0.16, T:0.10
Consensus pattern (16 bp):
AACCTGAAAAAGCTCA
Found at i:797119 original size:16 final size:16
Alignment explanation
Indices: 797077--797150 Score: 51
Period size: 16 Copynumber: 4.6 Consensus size: 16
797067 TGAGAAAGCT
*
797077 CAAACCCGAAA-AAGCT
1 CAAACCCGAAAGAA-CC
* * *
797093 CGAACCTGAAAGAACT
1 CAAACCCGAAAGAACC
* *
797109 CAAACTCGAAAGGACC
1 CAAACCCGAAAGAACC
*
797125 CAAACCCGAGAGAACC
1 CAAACCCGAAAGAACC
* *
797141 TAAATCCGAA
1 CAAACCCGAA
797151 TTTAATACTA
Statistics
Matches: 44, Mismatches: 13, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
16 42 0.95
17 2 0.05
ACGTcount: A:0.46, C:0.30, G:0.16, T:0.08
Consensus pattern (16 bp):
CAAACCCGAAAGAACC
Found at i:798119 original size:9 final size:10
Alignment explanation
Indices: 798106--798149 Score: 54
Period size: 11 Copynumber: 4.2 Consensus size: 10
798096 GTTAAATGGG
798106 TTTTTAAATA
1 TTTTTAAATA
798116 TTTTATTAAATA
1 -TTT-TTAAATA
798128 TATTTTAAAT-
1 T-TTTTAAATA
798138 TTTTTAAATA
1 TTTTTAAATA
798148 TT
1 TT
798150 AATTCAATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
9 8 0.27
10 3 0.10
11 10 0.33
12 9 0.30
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (10 bp):
TTTTTAAATA
Found at i:798547 original size:32 final size:32
Alignment explanation
Indices: 798511--798574 Score: 76
Period size: 32 Copynumber: 2.0 Consensus size: 32
798501 CTGAAATTAA
*
798511 CCCGAACCTGAACAAATCC-AAACCCGAATAAG
1 CCCGAACCTGAA-AAAGCCTAAACCCGAATAAG
** *
798543 CCCGAATTTGAAAAAGCCTAAACCCTAATAAG
1 CCCGAACCTGAAAAAGCCTAAACCCGAATAAG
798575 TTCGAATCCA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
31 5 0.19
32 22 0.81
ACGTcount: A:0.44, C:0.30, G:0.12, T:0.14
Consensus pattern (32 bp):
CCCGAACCTGAAAAAGCCTAAACCCGAATAAG
Found at i:798603 original size:13 final size:14
Alignment explanation
Indices: 798583--798610 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
798573 AGTTCGAATC
798583 CAAAAAAATTCAAA
1 CAAAAAAATTCAAA
798597 CAAAAAAATTCAAA
1 CAAAAAAATTCAAA
798611 TCTAAATAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.71, C:0.14, G:0.00, T:0.14
Consensus pattern (14 bp):
CAAAAAAATTCAAA
Found at i:800703 original size:77 final size:77
Alignment explanation
Indices: 800618--800876 Score: 304
Period size: 79 Copynumber: 3.3 Consensus size: 77
800608 CAACCTCGTG
* * * *
800618 TTATTTCCCAAACACCGAATTTTTCATCTCGAGAATACTCCAACCCTATCATTTTTAAGAGATAC
1 TTATTTCCCAAACACCAAATTTTTCATCTCGAGAACACTCCAACCCTATCATTTTCAAGGGATAC
**
800683 TCAACCCCATTT
66 TCAACCCTGTTT
* * *
800695 TTATTTCCCAAATATCAAATTTTTCATCTCGAGGACACTCCAACCCTATCATTTTCAAGGGGATA
1 TTATTTCCCAAACACCAAATTTTTCATCTCGAGAACACTCCAACCCTATCATTTTCAA-GGGATA
*
800760 CTCTAACCTTGTTT
65 CTC-AACCCTGTTT
* ** * * * *
800774 TTACTTCTAAAACACCAAAATTTTCATCTTAGAGAACATTCCAACCCCA-CTATTTTCGAAGGGA
1 TTATTTCCCAAACACCAAATTTTTCATC-TCGAGAACACTCCAACCCTATC-ATTTTC-AAGGGA
800838 TACTCAACCCTGTTT
63 TACTCAACCCTGTTT
*
800853 TTATTTCCCAAACATCAAATTTTT
1 TTATTTCCCAAACACCAAATTTTT
800877 TTATCTTAGG
Statistics
Matches: 151, Mismatches: 26, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
77 52 0.34
78 8 0.05
79 58 0.38
80 31 0.21
81 2 0.01
ACGTcount: A:0.31, C:0.26, G:0.08, T:0.35
Consensus pattern (77 bp):
TTATTTCCCAAACACCAAATTTTTCATCTCGAGAACACTCCAACCCTATCATTTTCAAGGGATAC
TCAACCCTGTTT
Found at i:800829 original size:80 final size:78
Alignment explanation
Indices: 800627--800940 Score: 222
Period size: 80 Copynumber: 4.0 Consensus size: 78
800617 GTTATTTCCC
* * * * * * * *
800627 AAACACCGAATTTTTCATCTCGAGAATACTCCAACCCTATCATTTT-TAAGAGATACTCAACCCC
1 AAACACCAAAATTTTCATCTAGAGAACACTCCAACCCCATCATTTTCGAAGGGATACTCAACCCT
* * **
800691 ATTTTTATTTCCC
66 GTTTTTACTTCTA
* * * * * *
800704 AAATATCAAATTTTTCATCTCGAGGACACTCCAACCCTATCATTTTC-AAGGGGATACTCTAACC
1 AAACACCAAAATTTTCATCTAGAGAACACTCCAACCCCATCATTTTCGAA-GGGATACTC-AACC
*
800768 TTGTTTTTACTTCTA
64 CTGTTTTTACTTCTA
*
800783 AAACACCAAAATTTTCATCTTAGAGAACATTCCAACCCCA-CTATTTTCGAAGGGATACTCAACC
1 AAACACCAAAATTTTCATC-TAGAGAACACTCCAACCCCATC-ATTTTCGAAGGGATACTCAACC
* **
800847 CTGTTTTTATTTCCC
64 CTGTTTTTACTTCTA
* * * * * * * * * *
800862 AAACATCAAATTTTTTTATCTTAGGGGATACTCCAACTCCACCATTTTCG-AGAGGATACTCCAG
1 AAACACCAAA-ATTTTCATC-TAGAGAACACTCCAACCCCATCATTTTCGAAG-GGATACTCAAC
*
800926 CCTCATTTTTACTTC
63 CCT-GTTTTTACTTC
800941 CAGAACACTG
Statistics
Matches: 192, Mismatches: 35, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
77 43 0.22
78 8 0.04
79 56 0.29
80 73 0.38
81 12 0.06
ACGTcount: A:0.30, C:0.26, G:0.09, T:0.34
Consensus pattern (78 bp):
AAACACCAAAATTTTCATCTAGAGAACACTCCAACCCCATCATTTTCGAAGGGATACTCAACCCT
GTTTTTACTTCTA
Found at i:801783 original size:13 final size:13
Alignment explanation
Indices: 801765--801790 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
801755 CAATTTTTTG
801765 TGTATCGATACAT
1 TGTATCGATACAT
801778 TGTATCGATACAT
1 TGTATCGATACAT
801791 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:801802 original size:32 final size:33
Alignment explanation
Indices: 801745--801808 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
801735 TACAAGCCAA
**
801745 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTTGTGTATCGATACAT
801778 TGTATCGATAC-ATACTTTGTGTATCGATACA
1 TGTATCGATACAATACTTTGTGTATCGATACA
801809 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAT
Found at i:804284 original size:13 final size:13
Alignment explanation
Indices: 804266--804303 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
804256 ATAATCCCCT
804266 TGTATCGATACAG
1 TGTATCGATACAG
*
804279 TGTATCGATACAT
1 TGTATCGATACAG
804292 TGTATCGATACA
1 TGTATCGATACA
804304 AAGAAAAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:807529 original size:1 final size:1
Alignment explanation
Indices: 807523--807621 Score: 81
Period size: 1 Copynumber: 99.0 Consensus size: 1
807513 AAATCTTCAC
* * ** * * * *
807523 TTTTTTTTGTTTTTTTTTTTTTTTTCTTTTTCCTTTTTTTTTGTTTTGTTTTGTTTTTTTTTCTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
** * * *
807588 TTTCCTTTTTTTTTGTTTTGTTTTTTTTCTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
807622 CCAATTGCCA
Statistics
Matches: 76, Mismatches: 22, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 76 1.00
ACGTcount: A:0.00, C:0.07, G:0.06, T:0.87
Consensus pattern (1 bp):
T
Found at i:807580 original size:37 final size:36
Alignment explanation
Indices: 807523--807622 Score: 168
Period size: 37 Copynumber: 2.8 Consensus size: 36
807513 AAATCTTCAC
807523 TTTTTTTTG-TTT-TTTTTTTTTTTTTCTTTTTCCT
1 TTTTTTTTGTTTTGTTTTTTTTTTTTTCTTTTTCCT
807557 TTTTTTTTGTTTTGTTTTGTTTTTTTTTCTTTTTCCT
1 TTTTTTTTGTTTTGTTTT-TTTTTTTTTCTTTTTCCT
807594 TTTTTTTTGTTTTGTTTTTTTTCTTTTTC
1 TTTTTTTTGTTTTGTTTTTTTT-TTTTTC
807623 CAATTGCCAT
Statistics
Matches: 62, Mismatches: 0, Indels: 5
0.93 0.00 0.07
Matches are distributed among these distances:
34 9 0.15
35 3 0.05
36 8 0.13
37 42 0.68
ACGTcount: A:0.00, C:0.08, G:0.06, T:0.86
Consensus pattern (36 bp):
TTTTTTTTGTTTTGTTTTTTTTTTTTTCTTTTTCCT
Found at i:815201 original size:15 final size:15
Alignment explanation
Indices: 815181--815211 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
815171 ATTTCGTTTG
*
815181 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
815196 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
815211 G
1 G
815212 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:819296 original size:13 final size:13
Alignment explanation
Indices: 819278--819303 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
819268 CAATTTTTTG
819278 TGTATCGATACAT
1 TGTATCGATACAT
819291 TGTATCGATACAT
1 TGTATCGATACAT
819304 ATTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:819314 original size:32 final size:33
Alignment explanation
Indices: 819258--819321 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 33
819248 TACAAGCCAA
*
819258 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATATTTTGTGTATCGATACAT
819291 TGTATCGATAC-ATATTTTGTGTATCGATACA
1 TGTATCGATACAATATTTTGTGTATCGATACA
819322 AGTTTGGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 19 0.63
33 11 0.37
ACGTcount: A:0.28, C:0.12, G:0.16, T:0.44
Consensus pattern (33 bp):
TGTATCGATACAATATTTTGTGTATCGATACAT
Found at i:819315 original size:19 final size:19
Alignment explanation
Indices: 819258--819321 Score: 68
Period size: 19 Copynumber: 3.6 Consensus size: 19
819248 TACAAGCCAA
*
819258 TGTATCGATACAATTTTTTG
1 TGTATCGATAC-ATATTTTG
819278 TGTATCGATAC--A---T-
1 TGTATCGATACATATTTTG
819291 TGTATCGATACATATTTTG
1 TGTATCGATACATATTTTG
819310 TGTATCGATACA
1 TGTATCGATACA
819322 AGTTTGGCTA
Statistics
Matches: 37, Mismatches: 1, Indels: 13
0.73 0.02 0.25
Matches are distributed among these distances:
13 11 0.30
14 1 0.03
15 1 0.03
18 1 0.03
19 12 0.32
20 11 0.30
ACGTcount: A:0.28, C:0.12, G:0.16, T:0.44
Consensus pattern (19 bp):
TGTATCGATACATATTTTG
Found at i:820057 original size:24 final size:24
Alignment explanation
Indices: 820007--820059 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
819997 ATCGTCTCTT
** *
820007 TTTTTATGTATTTTTGTGCATTTC
1 TTTTTATGTAAATTTGTGCATTAC
* *
820031 TTTTTATGTAAATTTGTTCGTTAC
1 TTTTTATGTAAATTTGTGCATTAC
820055 TTTTT
1 TTTTT
820060 TTTCGTTTTA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.15, C:0.08, G:0.11, T:0.66
Consensus pattern (24 bp):
TTTTTATGTAAATTTGTGCATTAC
Found at i:820801 original size:21 final size:21
Alignment explanation
Indices: 820776--820825 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
820766 GAAGAAACTA
820776 GATGATTTGGTATTTAATGGT
1 GATGATTTGGTATTTAATGGT
*
820797 GATGATTTGGTATTTGATGGT
1 GATGATTTGGTATTTAATGGT
*
820818 AATGATTT
1 GATGATTT
820826 AGCATGAGAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.24, C:0.00, G:0.28, T:0.48
Consensus pattern (21 bp):
GATGATTTGGTATTTAATGGT
Found at i:823948 original size:30 final size:31
Alignment explanation
Indices: 823914--823974 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
823904 AATATGAGTA
* * *
823914 TAAATCTCAAAAA-TTAAATTTAAAATAATT
1 TAAATCTAAAAAATTTAAATTAAAAAAAATT
*
823944 TAAATTTAAAAAATTTAAATTAAAAAAAATT
1 TAAATCTAAAAAATTTAAATTAAAAAAAATT
823975 AATGTAACTA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 11 0.42
31 15 0.58
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (31 bp):
TAAATCTAAAAAATTTAAATTAAAAAAAATT
Found at i:823958 original size:15 final size:15
Alignment explanation
Indices: 823922--823976 Score: 76
Period size: 15 Copynumber: 3.7 Consensus size: 15
823912 TATAAATCTC
823922 AAAAA-TTAAATTTA
1 AAAAATTTAAATTTA
823936 AAATAATTTAAATTTA
1 AAA-AATTTAAATTTA
*
823952 AAAAATTTAAATTAA
1 AAAAATTTAAATTTA
*
823967 AAAAAATTAA
1 AAAAATTTAA
823977 TGTAACTAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
14 3 0.08
15 22 0.59
16 12 0.32
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (15 bp):
AAAAATTTAAATTTA
Found at i:829565 original size:27 final size:26
Alignment explanation
Indices: 829493--829585 Score: 75
Period size: 26 Copynumber: 3.6 Consensus size: 26
829483 TTAACATGAA
* *
829493 AAATAAA-A-AGAAAAACCAAAGAAG
1 AAATAAAGAGAGAAAAACAAAAAAAG
* * ***
829517 AAAGAAAGAAAGAAATTGAAAAAATA-
1 AAATAAAGAGAGAAAAACAAAAAA-AG
*
829543 AAATAAAGTGGAGAAAAACAAAAAAAG
1 AAATAAAG-AGAGAAAAACAAAAAAAG
829570 AAATAAAGAGAGAAAA
1 AAATAAAGAGAGAAAA
829586 TGGTAAATAA
Statistics
Matches: 51, Mismatches: 13, Indels: 8
0.71 0.18 0.11
Matches are distributed among these distances:
24 6 0.12
25 1 0.02
26 24 0.47
27 20 0.39
ACGTcount: A:0.73, C:0.03, G:0.16, T:0.08
Consensus pattern (26 bp):
AAATAAAGAGAGAAAAACAAAAAAAG
Found at i:829752 original size:16 final size:16
Alignment explanation
Indices: 829733--829771 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
829723 CTAAAATTAT
* *
829733 CCGAACCCGAGACAGC
1 CCGAACCCAAGAAAGC
*
829749 CCGAACCCAAGAAAGT
1 CCGAACCCAAGAAAGC
829765 CCGAACC
1 CCGAACC
829772 TGAAAAAGTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.36, C:0.41, G:0.21, T:0.03
Consensus pattern (16 bp):
CCGAACCCAAGAAAGC
Found at i:829779 original size:16 final size:16
Alignment explanation
Indices: 829760--829792 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
829750 CGAACCCAAG
829760 AAAGTCCGAACCTGAA
1 AAAGTCCGAACCTGAA
*
829776 AAAGTTCGAACCTGAA
1 AAAGTCCGAACCTGAA
829792 A
1 A
829793 GAACCTAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.45, C:0.21, G:0.18, T:0.15
Consensus pattern (16 bp):
AAAGTCCGAACCTGAA
Found at i:836807 original size:5 final size:5
Alignment explanation
Indices: 836799--836823 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
836789 TAATTTTAGA
836799 ATTTT ATTTT ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT
836824 TTAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:836826 original size:30 final size:30
Alignment explanation
Indices: 836748--836824 Score: 86
Period size: 29 Copynumber: 2.6 Consensus size: 30
836738 CTATTTCTAA
*
836748 AATTTTATTTATGATTATTA-AATTTAATTTT
1 AATTTTATTT-TAATT-TTAGAATTTAATTTT
* *
836779 AATTTTCTTTTAATTTTAGAATTTTATTTT
1 AATTTTATTTTAATTTTAGAATTTAATTTT
*
836809 -ATTTTATTTTATTTTT
1 AATTTTATTTTAATTTT
836825 TAACTAATTT
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
29 17 0.43
30 14 0.35
31 9 0.22
ACGTcount: A:0.29, C:0.01, G:0.03, T:0.68
Consensus pattern (30 bp):
AATTTTATTTTAATTTTAGAATTTAATTTT
Found at i:837967 original size:33 final size:32
Alignment explanation
Indices: 837924--837985 Score: 88
Period size: 33 Copynumber: 1.9 Consensus size: 32
837914 TACAAGCTAA
*
837924 TGTATCGATACATTTTGGGATGTATCGATATAT
1 TGTATCGATACATCTTGGG-TGTATCGATATAT
* *
837957 TGTATGGATACATCTTGTGTGTATCGATA
1 TGTATCGATACATCTTGGGTGTATCGATA
837986 CAAACAGTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 10 0.38
33 16 0.62
ACGTcount: A:0.26, C:0.10, G:0.23, T:0.42
Consensus pattern (32 bp):
TGTATCGATACATCTTGGGTGTATCGATATAT
Found at i:838653 original size:17 final size:17
Alignment explanation
Indices: 838631--838663 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
838621 TGTTTGTTGA
838631 TATGATGTT-AATTTTTG
1 TATGAT-TTCAATTTTTG
838648 TATGATTTCAATTTTT
1 TATGATTTCAATTTTT
838664 TTCGTATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 2 0.13
17 13 0.87
ACGTcount: A:0.24, C:0.03, G:0.12, T:0.61
Consensus pattern (17 bp):
TATGATTTCAATTTTTG
Found at i:839265 original size:165 final size:162
Alignment explanation
Indices: 838925--839375 Score: 477
Period size: 165 Copynumber: 2.7 Consensus size: 162
838915 GACTAAATTG
* * * *
838925 TAAATATTAAAAATTTTGTTCTAAGGCCAAAGTCACTT-GACCGAATCTTTCTTGTGACTTTTGT
1 TAAATATTAGAAATTTTGTTCTAAGGCCAAAGT-ACTTAG-CTGAATCTTTCTTGT-AATTTTGG
* * * *
838989 ATGTGATTTTTTTGTACTGATTTTGATATGTTTAATGTTTAAATTTTGTGTCTTAATTATATAAG
63 AT-TGATTTTTGTGT--TGATTTTGATATATTTGATGTTT-AATTTTGTGTTTTAATTATATAAG
*
839054 AACCAATTTGTAATTTTAAAAAGTTTAAGGATTTAAGTA
124 AACCAATTTGTAATTTTAAAAAGTTTAAAGATTTAAGTA
* **
839093 TAAATATTAGAAATTTTATTCTAAAACCAAAAGTACTTAGCTGAATCTTTCTTGTAATTTTTGGA
1 TAAATATTAGAAATTTTGTTCTAAGGCC-AAAGTACTTAGCTGAATCTTTCTTGTAA-TTTTGGA
* * * *
839158 TTTGATTTTTGTGTTGATTTTGATATATTTGATGCTTATTTTTGTGTTTTAATTATTTAAG-ATC
64 -TTGATTTTTGTGTTGATTTTGATATATTTGATGTTTAATTTTGTGTTTTAATTATATAAGAACC
**
839222 AATTTGTAATTTTAAAAAAGTTTAAA-AGTTTATTTA
128 AATTTGTAATTTT-AAAAAGTTTAAAGA-TTTAAGTA
* * ** *
839258 TAAATATT-GAAAAATTTGTTCCAAGGCCAAAGTTACTTAGCTGAATCTCCCTTGTAA-CTT-G-
1 TAAATATTAG-AAATTTTGTTCTAAGGCCAAAG-TACTTAGCTGAATCTTTCTTGTAATTTTGGA
* * * *
839319 -TGAGTTTGGTGTTGATTTTAATATATTTGATATTTAATTTTGTGTTTTAATTATATA
64 TTGATTTTTGTGTTGATTTTGATATATTTGATGTTTAATTTTGTGTTTTAATTATATA
839376 GGGTTTAAAT
Statistics
Matches: 242, Mismatches: 33, Indels: 25
0.81 0.11 0.08
Matches are distributed among these distances:
159 50 0.21
162 1 0.00
163 2 0.01
164 21 0.09
165 81 0.33
166 20 0.08
167 1 0.00
168 59 0.24
169 7 0.03
ACGTcount: A:0.31, C:0.08, G:0.14, T:0.47
Consensus pattern (162 bp):
TAAATATTAGAAATTTTGTTCTAAGGCCAAAGTACTTAGCTGAATCTTTCTTGTAATTTTGGATT
GATTTTTGTGTTGATTTTGATATATTTGATGTTTAATTTTGTGTTTTAATTATATAAGAACCAAT
TTGTAATTTTAAAAAGTTTAAAGATTTAAGTA
Found at i:840211 original size:156 final size:156
Alignment explanation
Indices: 839930--840608 Score: 539
Period size: 156 Copynumber: 4.4 Consensus size: 156
839920 AAGTTGTCAT
** * * * ** *
839930 TTTAT-ATCATTTTTGTGTCTTTTAGGG-TATCGAAGACACTTCCATGTTGAAAGTATATCTTAA
1 TTTATGATCATTTTTAAGTCTTTTAGGGTTA-CCAAGATACTTTCATGACGAAAGTATACCTTAA
* * * * * ***
839993 GGGCATTTTCATAATTTTTTTAGAACCAAGTTTTAGGTTGTCACTGGGATGCTTTTATGTCAAAG
65 GGGTATTTTCATAATTTTTTTAGAATCGAGTCTTAGGTAGTCACCAAGATGCTTTTATGTCAAAG
*
840058 ATGTGCATATAAGATAGGTTCATCCCA
130 GTGTGCATATAAGATAGGTTCATCCCA
*
840085 TTTATGATCATTTTTAAGTCTTTTAGGGTTACCAAGATACTTTCATGAAGAAAGTATACCTTAAG
1 TTTATGATCATTTTTAAGTCTTTTAGGGTTACCAAGATACTTTCATGACGAAAGTATACCTTAAG
* * *
840150 GGTATTTTCATAATTTTATTAGAATCGAGTCTTAGGTAGTCACCAAGTTGCTTTTATGTCAAAGC
66 GGTATTTTCATAATTTTTTTAGAATCGAGTCTTAGGTAGTCACCAAGATGCTTTTATGTCAAAGG
* * * *
840215 TTTACATATAGGATAGGTTCAT-CCT
131 TGTGCATATAAGATAGGTTCATCCCA
* * * * * * * * *
840240 TTTCATAATCCTTTCGT--GTCTTTTAGGATTACCGAGATACTTTCACGTCGAAAATAT-CC-CA
1 TTT-ATGATCATTT-TTAAGTCTTTTAGGGTTACCAAGATACTTTCATGACGAAAGTATACCTTA
** * * * *
840301 AGGGTATTTTTGTAATTTTCTTAGAATCGAATCTTAGGTTGTCACTGAA-ATGCTTTTATG-CTA
64 AGGGTATTTTCATAATTTTTTTAGAATCGAGTCTTAGGTAGTCAC-CAAGATGCTTTTATGTC-A
* * * * **
840364 AAGGTATGCATTTATGATAGATTCATCCTG
127 AAGGTGTGCATATAAGATAGGTTCATCCCA
* * *
840394 TTTATGATCATTTTTAAGT-TCTTTAGAGTTACTAGGATACTTTCAT-ATCG-AAGATATA-CTC
1 TTTATGATCATTTTTAAGTCT-TTTAGGGTTACCAAGATACTTTCATGA-CGAAAG-TATACCT-
* * * * ** * *
840455 TAAAGATATTTTCATAATTTTTTTAAAAATCGAGTCCTAGGTTA-TCA-CTGGATGTTTTTATGC
62 TAAGGGTATTTTCATAATTTTTTT-AGAATCGAGTCTTAGG-TAGTCACCAAGATGCTTTTATGT
* *
840518 CAAAGGTGTGCAT-TCAAGATAGTTTCATCCTA
125 CAAAGGTGTGCATAT-AAGATAGGTTCATCCCA
* * * * *
840550 TTTATGATCA-TTTTAAGTTTTTTAGCGTTA-CTAGAATACTTTCATGTCGAAGGTATACC
1 TTTATGATCATTTTTAAGTCTTTTAGGGTTACCAAG-ATACTTTCATGACGAAAGTATACC
840609 CTAGAAATAT
Statistics
Matches: 416, Mismatches: 83, Indels: 49
0.76 0.15 0.09
Matches are distributed among these distances:
152 2 0.00
153 83 0.20
154 36 0.09
155 78 0.19
156 196 0.47
157 20 0.05
158 1 0.00
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (156 bp):
TTTATGATCATTTTTAAGTCTTTTAGGGTTACCAAGATACTTTCATGACGAAAGTATACCTTAAG
GGTATTTTCATAATTTTTTTAGAATCGAGTCTTAGGTAGTCACCAAGATGCTTTTATGTCAAAGG
TGTGCATATAAGATAGGTTCATCCCA
Found at i:840591 original size:309 final size:309
Alignment explanation
Indices: 840025--840600 Score: 652
Period size: 309 Copynumber: 1.9 Consensus size: 309
840015 GAACCAAGTT
** * *
840025 TTAGGTTGTCACTGGGATGCTTTTATGTCAAAGATGTGCATATAAGATAGGTTCATCCCATTTAT
1 TTAGGTTGTCACTGAAATGCTTTTATGTCAAAGATATGCATATAAGATAGATTCATCCCATTTAT
* * *
840090 GATCATTTTTAAGTCTTTTAGGGTTACCAAGATACTTTCATGAAGAAAGTATACCTTAAGGGTAT
66 GATCATTTTTAAGTCTTTTAGAGTTACCAAGATACTTTCATGAAGAAAGTATACCTTAAAGATAT
* * * * *
840155 TTTCATAATTTTATTAGAATCGAGTCTTAGGTAGTCACCAAGTTGCTTTTATGTCAAAGCTTTAC
131 TTTCATAATTTTATTAAAATCGAGTCCTAGGTAGTCACCAAGATGCTTTTATGCCAAAGCTGTAC
* * ** *
840220 ATATAGGATAGGTTCATCCTTTTCATAATCCTTTCGTGTCTTTTAGGATTACCGAGATACTTTCA
196 ATATAAGATAGGTTCATCCTTTTCATAATCATTTCAAGTCTTTTAGGATTACAGAGATACTTTCA
840285 CGTCGAAAATATCCCAAGGGTATTTTTGTAATTTTCTTAGAATCGAATC
261 CGTCGAAAATATCCCAAGGGTATTTTTGTAATTTTCTTAGAATCGAATC
* * * **
840334 TTAGGTTGTCACTGAAATGCTTTTATG-CTAAAGGTATGCATTTATGATAGATTCATCCTGTTTA
1 TTAGGTTGTCACTGAAATGCTTTTATGTC-AAAGATATGCATATAAGATAGATTCATCCCATTTA
* * *
840398 TGATCATTTTTAAGT-TCTTTAGAGTTACTAGGATACTTTCAT-ATCG-AAGATATA-CTCTAAA
65 TGATCATTTTTAAGTCT-TTTAGAGTTACCAAGATACTTTCATGA-AGAAAG-TATACCT-TAAA
* ** *
840459 GATATTTTCATAATTTTTTTAAAAATCGAGTCCTAGGTTA-TCA-CTGGATGTTTTTATGCCAAA
126 GATATTTTCATAATTTTATT-AAAATCGAGTCCTAGG-TAGTCACCAAGATGCTTTTATGCCAAA
* * * * * *
840522 GGTGTGCAT-TCAAGATAGTTTCATCCTATTT-ATGATCATTTTAAGTTTTTTAGCG-TTACTAG
189 GCTGTACATAT-AAGATAGGTTCATCCT-TTTCATAATCATTTCAAGTCTTTTAG-GATTAC-AG
*
840584 A-ATACTTTCATGTCGAA
250 AGATACTTTCACGTCGAA
840601 GGTATACCCT
Statistics
Matches: 220, Mismatches: 36, Indels: 22
0.79 0.13 0.08
Matches are distributed among these distances:
308 9 0.04
309 186 0.85
310 23 0.10
311 2 0.01
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (309 bp):
TTAGGTTGTCACTGAAATGCTTTTATGTCAAAGATATGCATATAAGATAGATTCATCCCATTTAT
GATCATTTTTAAGTCTTTTAGAGTTACCAAGATACTTTCATGAAGAAAGTATACCTTAAAGATAT
TTTCATAATTTTATTAAAATCGAGTCCTAGGTAGTCACCAAGATGCTTTTATGCCAAAGCTGTAC
ATATAAGATAGGTTCATCCTTTTCATAATCATTTCAAGTCTTTTAGGATTACAGAGATACTTTCA
CGTCGAAAATATCCCAAGGGTATTTTTGTAATTTTCTTAGAATCGAATC
Found at i:844540 original size:38 final size:37
Alignment explanation
Indices: 844469--844540 Score: 94
Period size: 37 Copynumber: 1.9 Consensus size: 37
844459 TATATAAATA
*
844469 TAAATATAAAAATAATTTTTAATATTTTAATATTATT
1 TAAATATAAAAATAATTTTTAATAATTTAATATTATT
844506 TAAATA-ATAAAATAATTTTTAAATAAATTT-ATATT
1 TAAATATA-AAAATAATTTTT-AAT-AATTTAATATT
844541 TAATCTTAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
36 1 0.03
37 18 0.58
38 8 0.26
39 4 0.13
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (37 bp):
TAAATATAAAAATAATTTTTAATAATTTAATATTATT
Found at i:846365 original size:2 final size:2
Alignment explanation
Indices: 846358--846418 Score: 104
Period size: 2 Copynumber: 30.5 Consensus size: 2
846348 GACTGTTTAA
* *
846358 TC TC TC TC CC TC TC TC TC TC TC TT TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
846400 TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC T
846419 TATCAAATTT
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 55 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:855558 original size:13 final size:13
Alignment explanation
Indices: 855540--855575 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
855530 TGTCGTGTCG
855540 TAAGAAATAAATA
1 TAAGAAATAAATA
855553 TAAGAAATAAATA
1 TAAGAAATAAATA
*
855566 -AATAAATAAA
1 TAAGAAATAAA
855576 AAGAATCGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 9 0.41
13 13 0.59
ACGTcount: A:0.72, C:0.00, G:0.06, T:0.22
Consensus pattern (13 bp):
TAAGAAATAAATA
Found at i:859625 original size:13 final size:13
Alignment explanation
Indices: 859607--859633 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
859597 TACAACACTT
859607 ATGTATCGATACA
1 ATGTATCGATACA
859620 ATGTATCGATACA
1 ATGTATCGATACA
859633 A
1 A
859634 ATTATTGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:860397 original size:52 final size:52
Alignment explanation
Indices: 860323--860885 Score: 422
Period size: 52 Copynumber: 11.4 Consensus size: 52
860313 AAAAGGATGT
*
860323 CAATGTGCTGATTCACGGTCAGCGACATTAGACTTGAAGATGAGAAGAATGC
1 CAATGTGCTGATTCAAGGTCAGCGACATTAGACTTGAAGATGAGAAGAATGC
* *
860375 CAATGTGCTGATTCACGATCAGCGACATTAGACTTGAAGATGAGAAGAATGC
1 CAATGTGCTGATTCAAGGTCAGCGACATTAGACTTGAAGATGAGAAGAATGC
860427 CAATGTGCTGATTCAAGGTCAGCGACATTAGACTTGAAGATGAGAAGAATGC
1 CAATGTGCTGATTCAAGGTCAGCGACATTAGACTTGAAGATGAGAAGAATGC
* * * *
860479 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG-G-TG--TGC
1 CAATGTGCTGATTCAAGGTCAGCGACATTAGACTTGAAGATGAGAAGAATGC
* * * * * * *
860527 CAATATGCTGATTCAAGGCCAGCAATATTGGGCTTGAAGAT-A-AAG-GTGC
1 CAATGTGCTGATTCAAGGTCAGCGACATTAGACTTGAAGATGAGAAGAATGC
* * * * * * * *
860576 CAATATGCTGATTCAAGGCCAGCGATACTGGTCTTAAAGATGACGAAGGCA--C
1 CAATGTGCTGATTCAAGGTCAGCGACATTAGACTTGAAGATGA-GAA-GAATGC
* * * * * * *
860628 CAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGAT--GAAG-GTGC
1 CAATGTGCTGATTCAAGGTCAGCGACATTAGACTTGAAGATGAGAAGAATGC
* * * **
860677 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGATGAAG-GCGC
1 CAATGTGCTGATTCAAGGTCAGCGACATTAGACTTGAAGATGA-GAAGAATGC
* * * * *
860729 CAATATGTTGATTCAAGGCCAGCGATATTGGACTT--A-A--AG--G--TGC
1 CAATGTGCTGATTCAAGGTCAGCGACATTAGACTTGAAGATGAGAAGAATGC
* *
860772 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTT--A-A--AG--G--TGC
1 CAATGTGCTGATTCAAGGTCAGCGACATTAGACTTGAAGATGAGAAGAATGC
* * * * *
860815 CAATGTACTGATTCAAGGCCAGCGACATTTGTCTTAAAGATGAG--G--TGC
1 CAATGTGCTGATTCAAGGTCAGCGACATTAGACTTGAAGATGAGAAGAATGC
* *
860863 CAATATGCTGATTCAAGGCCAGC
1 CAATGTGCTGATTCAAGGTCAGC
860886 AATATTGGGC
Statistics
Matches: 455, Mismatches: 38, Indels: 40
0.85 0.07 0.08
Matches are distributed among these distances:
43 74 0.16
44 1 0.00
45 1 0.00
46 2 0.00
47 1 0.00
48 68 0.15
49 83 0.18
50 3 0.01
51 1 0.00
52 220 0.48
53 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (52 bp):
CAATGTGCTGATTCAAGGTCAGCGACATTAGACTTGAAGATGAGAAGAATGC
Found at i:860674 original size:101 final size:96
Alignment explanation
Indices: 860323--860987 Score: 560
Period size: 101 Copynumber: 6.9 Consensus size: 96
860313 AAAAGGATGT
* * * * * * *
860323 CAATGTGCTGATTCACGGTCAGCGACATTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATT
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT--GAAG-GTGCCAATGTGCTGATT
* ** * *
860388 CACGATCAGCGACATTAGACTTGAAGATGAGAAGAATGC
63 CAAGGCCAGCGACATTGGACTTAAAGATG-G-AG---GC
* * * * * *
860427 CAATGTGCTGATTCAAGGTCAGCGACATTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATT
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT--GAAG-GTGCCAATGTGCTGATT
*
860492 CAAGGCCAGCGACATTGGACTTAAAGATGGTGTGC
63 CAAGGCCAGCGACATTGGACTTAAAGATGGAG-GC
* * * * *
860527 CAATATGCTGATTCAAGGCCAGCAATATTGGGCTTGAAGATAAAGGTGCCAATATGCTGATTCAA
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
* * *
860592 GGCCAGCGATACTGGTCTTAAAGATGACGAAGGCAC
66 GGCCAGCGACATTGGACTTAAAGATG--G-AGG--C
*
860628 CAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
860693 GGCCAGCGACATTGGACTTAAAGATGATGAAGGCGC
66 GGCCAGCGACATTGGACTTAAAGATG--G-A-G-GC
*
860729 CAATATGTTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGCCAATGTGCTGATTCAA
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
*
860788 GGCCAGCGACATTGGACTT-AA-A-GG-TGC
66 GGCCAGCGACATTGGACTTAAAGATGGAGGC
* * * * * *
860815 CAATGTACTGATTCAAGGCCAGCGACATTTGTCTTAAAGATG-AGGTGCCAATATGCTGATTCAA
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
* * *
860879 GGCCAGCAATATTGGGCTT----AT----GC
66 GGCCAGCGACATTGGACTTAAAGATGGAGGC
* * * * * * *
860902 CAATGTGCTGATTCAAGGCTAGCGACATTAGTCTTAAAGA-CAAGGTGCCAATATGCTGATTCAA
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
* *
860966 GGCCAGCAATATTGGACTTAAA
66 GGCCAGCGACATTGGACTTAAA
860988 AGAAGACGCC
Statistics
Matches: 495, Mismatches: 48, Indels: 50
0.83 0.08 0.08
Matches are distributed among these distances:
86 31 0.06
87 79 0.16
89 1 0.00
90 2 0.00
91 37 0.07
92 1 0.00
93 1 0.00
94 2 0.00
95 42 0.08
97 42 0.08
98 3 0.01
99 2 0.00
100 39 0.08
101 121 0.24
102 2 0.00
103 2 0.00
104 88 0.18
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (96 bp):
CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
GGCCAGCGACATTGGACTTAAAGATGGAGGC
Found at i:860788 original size:43 final size:43
Alignment explanation
Indices: 860722--860987 Score: 261
Period size: 43 Copynumber: 6.0 Consensus size: 43
860712 AAAGATGATG
* * *
860722 AAGGCGCCAATATGTTGATTCAAGGCCAGCGATATTGGACTTA
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTA
*
860765 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTA
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTA
* * * *
860808 AAGGTGCCAATGTACTGATTCAAGGCCAGCGACATTTGTCTTAAA
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTT--A
* * *
860853 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGGCTT-
1 -A--AGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTA
* * * *
860898 -A--TGCCAATGTGCTGATTCAAGGCTAGCGACATTAGTCTTAAAGA
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTT----A
* *
860942 CAAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTA
1 -AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTA
860986 AA
1 AA
860988 AGAAGACGCC
Statistics
Matches: 184, Mismatches: 25, Indels: 28
0.78 0.11 0.12
Matches are distributed among these distances:
39 32 0.17
41 1 0.01
43 80 0.43
44 1 0.01
45 1 0.01
46 2 0.01
48 67 0.36
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (43 bp):
AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTA
Found at i:860936 original size:87 final size:88
Alignment explanation
Indices: 860765--860985 Score: 327
Period size: 87 Copynumber: 2.5 Consensus size: 88
860755 ATTGGACTTA
* * *
860765 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGGTGCCAATGTACTGATTCA
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTT--A-GTGCCAATGTACTGATTCA
* *
860830 AGGCCAGCGACATTTGTCTTAAAGAT
63 AGGCCAGCGACATTAGTCTTAAAGAC
* * *
860856 GAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGGCTTA-TGCCAATGTGCTGATTCAAGG
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAGTGCCAATGTACTGATTCAAGG
*
860920 CTAGCGACATTAGTCTTAAAGAC
66 CCAGCGACATTAGTCTTAAAGAC
860943 AAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTA
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTA
860986 AAAGAAGACG
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
87 81 0.68
89 1 0.01
91 37 0.31
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (88 bp):
AAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAGTGCCAATGTACTGATTCAAGG
CCAGCGACATTAGTCTTAAAGAC
Found at i:861090 original size:33 final size:33
Alignment explanation
Indices: 861047--861211 Score: 165
Period size: 33 Copynumber: 5.0 Consensus size: 33
861037 GTGTGCTTTT
* * * *
861047 GAAAGTTGCCACTGACTTGTGGGCTTAAAAGGA
1 GAAAGATGCCACAGAGTTGTGGACTTAAAAGGA
*
861080 GAAAGATGCCACGGAGTTGTGGACTTAAAAGG-
1 GAAAGATGCCACAGAGTTGTGGACTTAAAAGGA
* ** *
861112 GAAAAGGTGCCATGGAGTTGTGGATTTAAAAGGA
1 G-AAAGATGCCACAGAGTTGTGGACTTAAAAGGA
*
861146 -ACAAGGATGCCACAGAGTTGTGGACTTAAAAAGA
1 GA-AA-GATGCCACAGAGTTGTGGACTTAAAAGGA
* *
861180 -AAAGGGTGCCACAGAGTTGTGGGCTTAAAAGG
1 GAAA-GATGCCACAGAGTTGTGGACTTAAAAGG
861212 GTGTCACGGA
Statistics
Matches: 113, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
32 2 0.02
33 86 0.76
34 25 0.22
ACGTcount: A:0.35, C:0.12, G:0.33, T:0.21
Consensus pattern (33 bp):
GAAAGATGCCACAGAGTTGTGGACTTAAAAGGA
Found at i:861171 original size:67 final size:66
Alignment explanation
Indices: 861053--861271 Score: 211
Period size: 67 Copynumber: 3.4 Consensus size: 66
861043 TTTTGAAAGT
* * * * *
861053 TGCCACTGACTTGTGGGCTTAAAAGGAGAAAGATGCCACGGAGTTGTGGACTTAAAAGGGAAAA-
1 TGCCACAGAGTTGTGGACTTAAAAGGAGAAAGATGCCACAGAGTTGTGGACTTAAAA-AGAAAAG
861117 GG
65 GG
** *
861119 TGCCATGGAGTTGTGGATTTAAAAGGA-ACAAGGATGCCACAGAGTTGTGGACTTAAAAAGAAAA
1 TGCCACAGAGTTGTGGACTTAAAAGGAGA-AA-GATGCCACAGAGTTGTGGACTTAAAAAGAAAA
861183 GGG
64 GGG
* * * *
861186 TGCCACAGAGTTGTGGGCTTAAAA-G-G---G-TGTCACGGAGTTGTGGGCTTTAAAAAGAAAAG
1 TGCCACAGAGTTGTGGACTTAAAAGGAGAAAGATGCCACAGAGTTGTGGAC-TTAAAAAGAAAAG
861245 GG
65 GG
* *
861247 TGCCACTGAGTTGTGGGCTTTAAAA
1 TGCCACAGAGTTGTGGAC-TTAAAA
861272 AGAAAAGGGT
Statistics
Matches: 132, Mismatches: 15, Indels: 16
0.81 0.09 0.10
Matches are distributed among these distances:
60 15 0.11
61 33 0.25
62 6 0.05
65 1 0.01
66 30 0.23
67 47 0.36
ACGTcount: A:0.32, C:0.12, G:0.33, T:0.22
Consensus pattern (66 bp):
TGCCACAGAGTTGTGGACTTAAAAGGAGAAAGATGCCACAGAGTTGTGGACTTAAAAAGAAAAGG
G
Found at i:861223 original size:27 final size:28
Alignment explanation
Indices: 861179--861271 Score: 98
Period size: 34 Copynumber: 3.1 Consensus size: 28
861169 ACTTAAAAAG
861179 AAAAGGGTGCCACAGAGTTGTGGGC-TT
1 AAAAGGGTGCCACAGAGTTGTGGGCTTT
* *
861206 AAAAGGGTGTCACGGAGTTGTGGGCTTT
1 AAAAGGGTGCCACAGAGTTGTGGGCTTT
*
861234 AAAAAGAAAAGGGTGCCACTGAGTTGTGGGCTTT
1 ------AAAAGGGTGCCACAGAGTTGTGGGCTTT
861268 AAAA
1 AAAA
861272 AGAAAAGGGT
Statistics
Matches: 55, Mismatches: 4, Indels: 13
0.76 0.06 0.18
Matches are distributed among these distances:
27 23 0.42
28 6 0.11
34 26 0.47
ACGTcount: A:0.30, C:0.12, G:0.34, T:0.24
Consensus pattern (28 bp):
AAAAGGGTGCCACAGAGTTGTGGGCTTT
Found at i:861258 original size:34 final size:34
Alignment explanation
Indices: 861206--861301 Score: 147
Period size: 34 Copynumber: 2.8 Consensus size: 34
861196 TTGTGGGCTT
*
861206 AAAAGGGTGTCACGGAGTTGTGGGCTTTAAAAAG
1 AAAAGGGTGCCACGGAGTTGTGGGCTTTAAAAAG
*
861240 AAAAGGGTGCCACTGAGTTGTGGGCTTTAAAAAG
1 AAAAGGGTGCCACGGAGTTGTGGGCTTTAAAAAG
* * *
861274 AAAAGGGTGCCATGGAGTCGTGGACTTT
1 AAAAGGGTGCCACGGAGTTGTGGGCTTT
861302 GGGAAGAAGA
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 56 1.00
ACGTcount: A:0.30, C:0.11, G:0.34, T:0.24
Consensus pattern (34 bp):
AAAAGGGTGCCACGGAGTTGTGGGCTTTAAAAAG
Found at i:868966 original size:13 final size:13
Alignment explanation
Indices: 868948--868978 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
868938 ACATCATTCT
868948 TTGTATCGATACA
1 TTGTATCGATACA
868961 TTGTATCGATACA
1 TTGTATCGATACA
*
868974 CTGTA
1 TTGTA
868979 GCAATACAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.39
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:871548 original size:13 final size:13
Alignment explanation
Indices: 871530--871554 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
871520 ACACAAAGTA
871530 TGTATCGATACAT
1 TGTATCGATACAT
871543 TGTATCGATACA
1 TGTATCGATACA
871555 CCATAAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:871551 original size:32 final size:33
Alignment explanation
Indices: 871510--871577 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
871500 ATAGCCAAAT
*
871510 TTGTATCGATACA-CA-AAGTATGTATCGATACA
1 TTGTATCGATACACCATAA-AATGTATCGATACA
871542 TTGTATCGATACACCATAAAATGTATCGATACA
1 TTGTATCGATACACCATAAAATGTATCGATACA
871575 TTG
1 TTG
871578 GCTTGTAACG
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
32 13 0.39
33 18 0.55
34 2 0.06
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (33 bp):
TTGTATCGATACACCATAAAATGTATCGATACA
Found at i:879669 original size:13 final size:13
Alignment explanation
Indices: 879651--879677 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
879641 TACAACACTT
879651 ATGTATCGATACA
1 ATGTATCGATACA
879664 ATGTATCGATACA
1 ATGTATCGATACA
879677 A
1 A
879678 ATTATTGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:879741 original size:21 final size:21
Alignment explanation
Indices: 879715--879768 Score: 99
Period size: 21 Copynumber: 2.6 Consensus size: 21
879705 TGGGACCTTG
879715 TATCGATACATTCTAGAAATA
1 TATCGATACATTCTAGAAATA
*
879736 TATCGATACATTCTAGAAATG
1 TATCGATACATTCTAGAAATA
879757 TATCGATACATT
1 TATCGATACATT
879769 TGGACAAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.39, C:0.15, G:0.11, T:0.35
Consensus pattern (21 bp):
TATCGATACATTCTAGAAATA
Found at i:881582 original size:2 final size:2
Alignment explanation
Indices: 881575--881619 Score: 63
Period size: 2 Copynumber: 22.5 Consensus size: 2
881565 ACTGGACTCA
* * *
881575 TC TC TC TC TT TC TT TC TC TC TC TC TC TC TC TC TA TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
881617 TC T
1 TC T
881620 TATCTTTCGC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.02, C:0.42, G:0.00, T:0.56
Consensus pattern (2 bp):
TC
Found at i:881770 original size:27 final size:25
Alignment explanation
Indices: 881740--881809 Score: 63
Period size: 27 Copynumber: 2.7 Consensus size: 25
881730 GATAAAAGGA
*
881740 TTATTTTTGAGAAAATAATAAGGTTTT
1 TTATTTTTGAAAAAATAATAA--TTTT
*
881767 TTA-TTAT-AATAATAATAATAATTTT
1 TTATTTTTGAA-AA-AATAATAATTTT
881792 TTAATTTTTGAAAAAATA
1 TT-ATTTTTGAAAAAATA
881810 TTTTTTAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 11
0.71 0.06 0.22
Matches are distributed among these distances:
25 7 0.20
26 10 0.29
27 16 0.46
28 2 0.06
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.49
Consensus pattern (25 bp):
TTATTTTTGAAAAAATAATAATTTT
Found at i:882147 original size:17 final size:17
Alignment explanation
Indices: 882125--882176 Score: 50
Period size: 20 Copynumber: 2.9 Consensus size: 17
882115 ATATATTTTT
882125 TATTAGATTTTAAAATA
1 TATTAGATTTTAAAATA
* *
882142 TATTAGTATTATAAATTATT
1 TATTAG-ATTTTAAA--ATA
*
882162 TATTAGAATTTAAAA
1 TATTAGATTTTAAAA
882177 GATGCGAACA
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
17 7 0.25
18 7 0.25
19 6 0.21
20 8 0.29
ACGTcount: A:0.46, C:0.00, G:0.06, T:0.48
Consensus pattern (17 bp):
TATTAGATTTTAAAATA
Found at i:883290 original size:13 final size:13
Alignment explanation
Indices: 883268--883297 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
883258 CAATTCCTCA
*
883268 TGTATTGATACAT
1 TGTATCGATACAT
883281 TGTATCGATACAT
1 TGTATCGATACAT
883294 TGTA
1 TGTA
883298 CCATGTATCG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.10, G:0.17, T:0.43
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:883303 original size:33 final size:33
Alignment explanation
Indices: 883248--883310 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
883238 TTTGGGACAA
* *
883248 TGTATCGATACAATTCCTCATGTATTGATACAT
1 TGTATCGATACAATTACTCATGTATCGATACAT
*
883281 TGTATCGATACATTGTAC-CATGTATCGATA
1 TGTATCGATACAAT-TACTCATGTATCGATA
883311 TAAACAATGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
33 24 0.92
34 2 0.08
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.38
Consensus pattern (33 bp):
TGTATCGATACAATTACTCATGTATCGATACAT
Found at i:883385 original size:39 final size:39
Alignment explanation
Indices: 883342--883474 Score: 266
Period size: 39 Copynumber: 3.4 Consensus size: 39
883332 CTGCCAGTTT
883342 CATGTATCGATACAATTGTGTATGTATCGATACAATGAA
1 CATGTATCGATACAATTGTGTATGTATCGATACAATGAA
883381 CATGTATCGATACAATTGTGTATGTATCGATACAATGAA
1 CATGTATCGATACAATTGTGTATGTATCGATACAATGAA
883420 CATGTATCGATACAATTGTGTATGTATCGATACAATGAA
1 CATGTATCGATACAATTGTGTATGTATCGATACAATGAA
883459 CATGTATCGATACAAT
1 CATGTATCGATACAAT
883475 GTATCAATAC
Statistics
Matches: 94, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 94 1.00
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33
Consensus pattern (39 bp):
CATGTATCGATACAATTGTGTATGTATCGATACAATGAA
Found at i:883387 original size:19 final size:19
Alignment explanation
Indices: 883342--883475 Score: 160
Period size: 19 Copynumber: 6.9 Consensus size: 19
883332 CTGCCAGTTT
**
883342 CATGTATCGATACAATTGTG
1 CATGTATCGATACAA-TGAA
*
883362 TATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
**
883381 CATGTATCGATACAATTGTG
1 CATGTATCGATACAA-TGAA
*
883401 TATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
**
883420 CATGTATCGATACAATTGTG
1 CATGTATCGATACAA-TGAA
*
883440 TATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
883459 CATGTATCGATACAATG
1 CATGTATCGATACAATG
883476 TATCAATACA
Statistics
Matches: 96, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
19 50 0.52
20 46 0.48
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:890554 original size:15 final size:15
Alignment explanation
Indices: 890536--890572 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
890526 TCCGAGTCAA
890536 CATCATCATTATCAT
1 CATCATCATTATCAT
* *
890551 CATCATTATTATCTT
1 CATCATCATTATCAT
890566 CATCATC
1 CATCATC
890573 TTTTATGGTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.30, C:0.27, G:0.00, T:0.43
Consensus pattern (15 bp):
CATCATCATTATCAT
Found at i:893782 original size:79 final size:77
Alignment explanation
Indices: 893699--893960 Score: 253
Period size: 79 Copynumber: 3.3 Consensus size: 77
893689 GATAAAAATT
** * *
893699 GGGTTGGAGTATCTCCTCGGAAATAACGAGGTTGGAGTATCCTTGATGGTGGAAAATCGATGTTT
1 GGGTTGGAGTATC-CCTCAAAAATAACGAGGTTGGAGTATCCTCGATTGTGGAAAATCGATGTTT
*
893764 TGAAAATAAAATTG
65 T-AAAATAAAATCG
* * * * * *
893778 GGGTTGGAGTATCCTCTTAAAAATAAC-AGGGTTGGAGCATCCTCAATTATGAAAAATCGGTGTT
1 GGGTTGGAGTATCC-CTCAAAAATAACGA-GGTTGGAGTATCCTCGATTGTGGAAAATCGATGTT
* *
893842 TTAAAA-ATAAACCA
64 TTAAAATA-AAATCG
* * * *
893856 GGCTTGGAGTATCACCTCAAAAATAACGAGATTGGATTATTCTCGATTGT-GAGAAATC-AGTGT
1 GGGTTGGAGTATC-CCTCAAAAATAACGAGGTTGGAGTATCCTCGATTGTGGA-AAATCGA-TGT
893919 TTTAGAAATAAAATCG
63 TTTA-AAATAAAATCG
893935 GGGTTGGAGTATCCCTTCAAAAATAA
1 GGGTTGGAGTATCCC-TCAAAAATAA
893961 TGGGATTAAA
Statistics
Matches: 147, Mismatches: 26, Indels: 20
0.76 0.13 0.10
Matches are distributed among these distances:
77 2 0.01
78 61 0.41
79 83 0.56
80 1 0.01
ACGTcount: A:0.34, C:0.13, G:0.24, T:0.29
Consensus pattern (77 bp):
GGGTTGGAGTATCCCTCAAAAATAACGAGGTTGGAGTATCCTCGATTGTGGAAAATCGATGTTTT
AAAATAAAATCG
Found at i:893913 original size:157 final size:157
Alignment explanation
Indices: 893702--894089 Score: 403
Period size: 157 Copynumber: 2.5 Consensus size: 157
893692 AAAAATTGGG
* ** * *
893702 TTGGAGTATCTCCTCGGAAATAACGAGGTTGGAGTATCCTTGATGGTGGAAAATC-GATGTTTT-
1 TTGGAGTATCACCTCAAAAATAACGAGATTGGAGTATCCTCGATGGTGGAAAATCAG-TGTTTTA
* ** * *
893765 GAAAATAAAATTGGGGTTGGAGTATCCTCTT-AAAAATAACAGGG-TTGGAGCATCCTCAATTAT
65 G-AAATAAAATCGGGGTTGGAGTATCC-CTTCAAAAATAA-AGGGATTAAAGCATCCCCAATGAT
* *
893828 GAAAAATCGGTGTTTTAAAAATAAACCAGGC
127 GAAAAATCAGTGTTTCAAAAATAAACCAGGC
* * *
893859 TTGGAGTATCACCTCAAAAATAACGAGATTGGATTATTCTCGATTGT-GAGAAATCAGTGTTTTA
1 TTGGAGTATCACCTCAAAAATAACGAGATTGGAGTATCCTCGATGGTGGA-AAATCAGTGTTTTA
*
893923 GAAATAAAATCGGGGTTGGAGTATCCCTTCAAAAATAATGGGATTAAAGCATCCCCAATGATGAA
65 GAAATAAAATCGGGGTTGGAGTATCCCTTCAAAAATAAAGGGATTAAAGCATCCCCAATGATGAA
* *
893988 AAATCAGTGTTTCAAAAATAAAACCAAGA
130 AAATCAGTGTTTCAAAAAT-AAACCAGGC
* * * * * * * * **
894017 TTGAACTATC-CCTTCGAAAATAACGGGGTTGGAGTATTCCT-AATAGTAGAAAATTGGTGTTTT
1 TTGGAGTATCACC-TCAAAAATAACGAGATTGGAGTA-TCCTCGATGGTGGAAAATCAGTGTTTT
894080 AGAAATAAAA
64 AGAAATAAAA
894090 AATATCAACG
Statistics
Matches: 193, Mismatches: 29, Indels: 17
0.81 0.12 0.07
Matches are distributed among these distances:
156 8 0.04
157 119 0.62
158 61 0.32
159 5 0.03
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.29
Consensus pattern (157 bp):
TTGGAGTATCACCTCAAAAATAACGAGATTGGAGTATCCTCGATGGTGGAAAATCAGTGTTTTAG
AAATAAAATCGGGGTTGGAGTATCCCTTCAAAAATAAAGGGATTAAAGCATCCCCAATGATGAAA
AATCAGTGTTTCAAAAATAAACCAGGC
Found at i:893992 original size:79 final size:79
Alignment explanation
Indices: 893751--894010 Score: 244
Period size: 79 Copynumber: 3.3 Consensus size: 79
893741 TTGATGGTGG
* *
893751 AAAATC-GATGTTTTGAAAATAAAATTGGGGTTGGAGTATCCTCTT-AAAAATAACAGGG-TTGG
1 AAAATCAG-TGTTTTAAAAATAAAATCGGGGTTGGAGTATCC-CTTCAAAAATAA-AGGGATTGG
* *
893813 AGCATCCTCAATTATGA
63 AGCATCCCCAATGATGA
* * * * * * *
893830 AAAATCGGTGTTTTAAAAAT-AAACCAGGCTTGGAGTATCACC-TCAAAAATAACGAGATTGGAT
1 AAAATCAGTGTTTTAAAAATAAAATCGGGGTTGGAGTATC-CCTTCAAAAATAAAGGGATTGGAG
* * * *
893893 TATTCTCGATTG-TGA
65 CA-TCCCCAATGATGA
* * * **
893908 GAAATCAGTGTTTTAGAAATAAAATCGGGGTTGGAGTATCCCTTCAAAAATAATGGGATTAAAGC
1 AAAATCAGTGTTTTAAAAATAAAATCGGGGTTGGAGTATCCCTTCAAAAATAAAGGGATTGGAGC
893973 ATCCCCAATGATGA
66 ATCCCCAATGATGA
*
893987 AAAATCAGTGTTTCAAAAATAAAA
1 AAAATCAGTGTTTTAAAAATAAAA
894011 CCAAGATTGA
Statistics
Matches: 141, Mismatches: 32, Indels: 16
0.75 0.17 0.08
Matches are distributed among these distances:
77 3 0.02
78 58 0.41
79 79 0.56
80 1 0.01
ACGTcount: A:0.39, C:0.13, G:0.20, T:0.28
Consensus pattern (79 bp):
AAAATCAGTGTTTTAAAAATAAAATCGGGGTTGGAGTATCCCTTCAAAAATAAAGGGATTGGAGC
ATCCCCAATGATGA
Found at i:896482 original size:30 final size:29
Alignment explanation
Indices: 896446--896551 Score: 176
Period size: 30 Copynumber: 3.6 Consensus size: 29
896436 GATACATTGA
896446 AGAATGTATCGATACATCTAGGTAAAACTC
1 AGAATGTATCGATACATCT-GGTAAAACTC
*
896476 AGAATGTATCGATACATCGGGGTAAAACTC
1 AGAATGTATCGATACATC-TGGTAAAACTC
896506 AGAATGTATCGATACATCTGGATAAAACTC
1 AGAATGTATCGATACATCTGG-TAAAACTC
896536 AGAATGTATCGATACA
1 AGAATGTATCGATACA
896552 AATTATGAAA
Statistics
Matches: 72, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
29 2 0.03
30 70 0.97
ACGTcount: A:0.40, C:0.16, G:0.19, T:0.25
Consensus pattern (29 bp):
AGAATGTATCGATACATCTGGTAAAACTC
Found at i:898682 original size:58 final size:58
Alignment explanation
Indices: 898618--898790 Score: 230
Period size: 58 Copynumber: 3.0 Consensus size: 58
898608 TGTTTTAGTT
*
898618 TTGATTTCCAAGATAGGGAATAGGTATGGATACTTGACTTCTTATAAGAAGGTATGGA
1 TTGATTTCCAAGATAGGGAATAGGTATGGATACATGACTTCTTATAAGAAGGTATGGA
898676 TTGATTTCCAAGATAGGGAATAGGTATGGATACATGACTTCTTATAAGAAGGTATGGA
1 TTGATTTCCAAGATAGGGAATAGGTATGGATACATGACTTCTTATAAGAAGGTATGGA
** * * *
898734 TACATGATTT-C-TTATA-AG-A-AGGTATGGATACATGACTTCTTATAAAAAGGCATGGA
1 T---TGATTTCCAAGATAGGGAATAGGTATGGATACATGACTTCTTATAAGAAGGTATGGA
898790 T
1 T
898791 AACAAAGCAA
Statistics
Matches: 106, Mismatches: 6, Indels: 8
0.88 0.05 0.07
Matches are distributed among these distances:
56 36 0.34
57 1 0.01
58 59 0.56
59 3 0.03
60 1 0.01
61 6 0.06
ACGTcount: A:0.35, C:0.09, G:0.24, T:0.32
Consensus pattern (58 bp):
TTGATTTCCAAGATAGGGAATAGGTATGGATACATGACTTCTTATAAGAAGGTATGGA
Found at i:898703 original size:30 final size:30
Alignment explanation
Indices: 898618--898706 Score: 80
Period size: 30 Copynumber: 3.0 Consensus size: 30
898608 TGTTTTAGTT
898618 TTGATTTCCAAGATAGGGAATAGGTATGGATA
1 TTGATTTCCAAGATAGGGAATAGGTATGG--A
* ** *
898650 CTTGACTT-C-TTATA-AG-A-AGGTATGGA
1 -TTGATTTCCAAGATAGGGAATAGGTATGGA
898676 TTGATTTCCAAGATAGGGAATAGGTATGGA
1 TTGATTTCCAAGATAGGGAATAGGTATGGA
898706 T
1 T
898707 ACATGACTTC
Statistics
Matches: 43, Mismatches: 8, Indels: 13
0.67 0.12 0.20
Matches are distributed among these distances:
25 6 0.14
26 2 0.05
27 3 0.07
28 9 0.21
29 2 0.05
30 11 0.26
31 3 0.07
32 1 0.02
33 6 0.14
ACGTcount: A:0.33, C:0.08, G:0.27, T:0.33
Consensus pattern (30 bp):
TTGATTTCCAAGATAGGGAATAGGTATGGA
Found at i:898734 original size:28 final size:28
Alignment explanation
Indices: 898639--898791 Score: 168
Period size: 28 Copynumber: 5.4 Consensus size: 28
898629 GATAGGGAAT
*
898639 AGGTATGGATACTTGACTTCTTATAAGA
1 AGGTATGGATACATGACTTCTTATAAGA
* ** *
898667 AGGTATGGAT---TGATTTCCAAGATAGGGAA
1 AGGTATGGATACATGACTT-C-TTATA-AG-A
898696 TAGGTATGGATACATGACTTCTTATAAGA
1 -AGGTATGGATACATGACTTCTTATAAGA
*
898725 AGGTATGGATACATGATTTCTTATAAGA
1 AGGTATGGATACATGACTTCTTATAAGA
*
898753 AGGTATGGATACATGACTTCTTATAAAA
1 AGGTATGGATACATGACTTCTTATAAGA
*
898781 AGGCATGGATA
1 AGGTATGGATA
898792 ACAAAGCAAA
Statistics
Matches: 105, Mismatches: 12, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
25 5 0.05
26 1 0.01
27 3 0.03
28 74 0.70
29 2 0.02
30 11 0.10
31 3 0.03
32 1 0.01
33 5 0.05
ACGTcount: A:0.35, C:0.09, G:0.24, T:0.32
Consensus pattern (28 bp):
AGGTATGGATACATGACTTCTTATAAGA
Found at i:899693 original size:21 final size:21
Alignment explanation
Indices: 899667--899721 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
899657 TTTTATGATT
* *
899667 TGTATCGATACAAGTAGT-GAA
1 TGTATCGATACAAGT-CTCAAA
*
899688 TGTATCGATACATGTCTCAAA
1 TGTATCGATACAAGTCTCAAA
899709 TGTATCGATACAA
1 TGTATCGATACAA
899722 AACCATGTCA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 1 0.03
21 28 0.97
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (21 bp):
TGTATCGATACAAGTCTCAAA
Found at i:904180 original size:20 final size:21
Alignment explanation
Indices: 904139--904181 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
904129 TATTAAAAAG
904139 TTAGCTAATGAAAATAATGAA
1 TTAGCTAATGAAAATAATGAA
904160 TTAGCTAA-GAAAAATAA-GAA
1 TTAGCTAATG-AAAATAATGAA
904180 TT
1 TT
904182 TGCATGATTC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 6 0.29
21 15 0.71
ACGTcount: A:0.53, C:0.05, G:0.14, T:0.28
Consensus pattern (21 bp):
TTAGCTAATGAAAATAATGAA
Found at i:908066 original size:13 final size:13
Alignment explanation
Indices: 908048--908076 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
908038 ACAACATTCC
908048 TTGTATCGATACA
1 TTGTATCGATACA
908061 TTGTATCGATACA
1 TTGTATCGATACA
908074 TTG
1 TTG
908077 GTAACTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:908751 original size:33 final size:32
Alignment explanation
Indices: 908693--908756 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 32
908683 TAACTGTTTG
*
908693 TATCGATACATACAGGATGTATCGATACATTC
1 TATCGATACATACAGAATGTATCGATACATTC
908725 TATCGATACATGACCA-AATGTATCGATACATT
1 TATCGATACAT-A-CAGAATGTATCGATACATT
908757 GGCTTGTAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 11 0.38
33 16 0.55
34 2 0.07
ACGTcount: A:0.36, C:0.19, G:0.14, T:0.31
Consensus pattern (32 bp):
TATCGATACATACAGAATGTATCGATACATTC
Found at i:914908 original size:13 final size:13
Alignment explanation
Indices: 914886--914924 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
914876 CAGCATTCTC
*
914886 TGTATTGATACAT
1 TGTATTGATACAG
*
914899 TGTATCGATACAG
1 TGTATTGATACAG
914912 TGTATTGATACAG
1 TGTATTGATACAG
914925 AGGGTTTATA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (13 bp):
TGTATTGATACAG
Found at i:917421 original size:13 final size:13
Alignment explanation
Indices: 917403--917427 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
917393 ATAATGCACA
917403 GTATCGATACATT
1 GTATCGATACATT
917416 GTATCGATACAT
1 GTATCGATACAT
917428 GACCACTGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:917424 original size:33 final size:32
Alignment explanation
Indices: 917382--917444 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 32
917372 CACCTTCAGA
*
917382 TGTATCGATACATAATGCACAGTATCGATACAT
1 TGTATCGATACATAA-CCACAGTATCGATACAT
* *
917415 TGTATCGATACATGACCACTGTATCGATAC
1 TGTATCGATACATAACCACAGTATCGATAC
917445 TTGCAAAGAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 13 0.48
33 14 0.52
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (32 bp):
TGTATCGATACATAACCACAGTATCGATACAT
Found at i:917439 original size:19 final size:19
Alignment explanation
Indices: 917415--917484 Score: 86
Period size: 19 Copynumber: 3.6 Consensus size: 19
917405 ATCGATACAT
917415 TGTATCGATACATGACCAC
1 TGTATCGATACATGACCAC
* ** *
917434 TGTATCGATACTTGCAAAGAT
1 TGTATCGATACATG--ACCAC
917455 TGTATCGATACATGACCAC
1 TGTATCGATACATGACCAC
917474 TGTATCGATAC
1 TGTATCGATAC
917485 TTGCAAAGAT
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
19 26 0.63
21 15 0.37
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.30
Consensus pattern (19 bp):
TGTATCGATACATGACCAC
Found at i:917460 original size:21 final size:21
Alignment explanation
Indices: 917434--917505 Score: 94
Period size: 21 Copynumber: 3.5 Consensus size: 21
917424 ACATGACCAC
917434 TGTATCGATACTTGCAAAGAT
1 TGTATCGATACTTGCAAAGAT
* ** *
917455 TGTATCGATACATG--ACCAC
1 TGTATCGATACTTGCAAAGAT
917474 TGTATCGATACTTGCAAAGAT
1 TGTATCGATACTTGCAAAGAT
917495 TGTATCGATAC
1 TGTATCGATAC
917506 AGGTGATTGG
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
19 15 0.37
21 26 0.63
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (21 bp):
TGTATCGATACTTGCAAAGAT
Found at i:917468 original size:40 final size:40
Alignment explanation
Indices: 917413--917506 Score: 188
Period size: 40 Copynumber: 2.4 Consensus size: 40
917403 GTATCGATAC
917413 ATTGTATCGATACATGACCACTGTATCGATACTTGCAAAG
1 ATTGTATCGATACATGACCACTGTATCGATACTTGCAAAG
917453 ATTGTATCGATACATGACCACTGTATCGATACTTGCAAAG
1 ATTGTATCGATACATGACCACTGTATCGATACTTGCAAAG
917493 ATTGTATCGATACA
1 ATTGTATCGATACA
917507 GGTGATTGGC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 54 1.00
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (40 bp):
ATTGTATCGATACATGACCACTGTATCGATACTTGCAAAG
Done.