Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold275
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1025155
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 499 characters in sequence are not A, C, G, or T
File 7 of 7
Found at i:917528 original size:11 final size:11
Alignment explanation
Indices: 917512--917545 Score: 68
Period size: 11 Copynumber: 3.1 Consensus size: 11
917502 ATACAGGTGA
917512 TTGGCAGTAGC
1 TTGGCAGTAGC
917523 TTGGCAGTAGC
1 TTGGCAGTAGC
917534 TTGGCAGTAGC
1 TTGGCAGTAGC
917545 T
1 T
917546 ACCCTTAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.18, C:0.18, G:0.35, T:0.29
Consensus pattern (11 bp):
TTGGCAGTAGC
Found at i:924251 original size:16 final size:15
Alignment explanation
Indices: 924239--924271 Score: 52
Period size: 13 Copynumber: 2.3 Consensus size: 15
924229 AAAAAACATT
924239 AAAAAATAAAAACAA
1 AAAAAATAAAAACAA
924254 AAAAAAT--AAACAA
1 AAAAAATAAAAACAA
924267 AAAAA
1 AAAAA
924272 GAGGGGAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 11 0.61
15 7 0.39
ACGTcount: A:0.88, C:0.06, G:0.00, T:0.06
Consensus pattern (15 bp):
AAAAAATAAAAACAA
Found at i:925853 original size:32 final size:32
Alignment explanation
Indices: 925816--925998 Score: 230
Period size: 32 Copynumber: 5.7 Consensus size: 32
925806 AAACCCTTTC
* * *
925816 AAAGCCCACAGAAGTTAGTGACAACCTCTTCA
1 AAAGCCCACACAAGTTGGTGGCAACCTCTTCA
* *
925848 AAAGCCCACACAAGTTGGTGGCAATCTTTTCTA
1 AAAGCCCACACAAGTTGGTGGCAACCTCTTC-A
* *
925881 AAA-CTCACACAAGTTGGTGGCAACCTTCTT-T
1 AAAGCCCACACAAGTTGGTGGCAACC-TCTTCA
*
925912 AAAGCCCACACAAGTTGGTGGCAACCTTCTT-T
1 AAAGCCCACACAAGTTGGTGGCAACC-TCTTCA
925944 AAAGCCCACACAAGTTGGTGGCAACC-CTTTCA
1 AAAGCCCACACAAGTTGGTGGCAACCTC-TTCA
925976 AAAGCCCACACAAGTTGGTGGCA
1 AAAGCCCACACAAGTTGGTGGCA
925999 TTTCCTTTTA
Statistics
Matches: 135, Mismatches: 11, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
30 1 0.01
31 5 0.04
32 122 0.90
33 7 0.05
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.22
Consensus pattern (32 bp):
AAAGCCCACACAAGTTGGTGGCAACCTCTTCA
Found at i:925986 original size:96 final size:97
Alignment explanation
Indices: 925811--925998 Score: 274
Period size: 96 Copynumber: 1.9 Consensus size: 97
925801 TGGAAAAACC
* * *
925811 CTTTCAAAGCCCACAGAAGTTAGTGACAACCTCTTCAAAAGCCCACACAAGTTGGTGGCAATCTT
1 CTTTCAAAGCCCACACAAGTTAGTGACAACCTCTTCAAAAGCCCACACAAGTTGGTGGCAACCCT
*
925876 TTCTAAAACTCACACAAGTTGGTGGCAACCTT
66 TTCTAAAACCCACACAAGTTGGTGGCAACCTT
* * *
925908 CTTT-AAAGCCCACACAAGTTGGTGGCAACCTTCTT-TAAAGCCCACACAAGTTGGTGGCAACCC
1 CTTTCAAAGCCCACACAAGTTAGTGACAACC-TCTTCAAAAGCCCACACAAGTTGGTGGCAACCC
925971 TTTC-AAAAGCCCACACAAGTTGGTGGCA
65 TTTCTAAAA-CCCACACAAGTTGGTGGCA
925999 TTTCCTTTTA
Statistics
Matches: 82, Mismatches: 7, Indels: 5
0.87 0.07 0.05
Matches are distributed among these distances:
95 4 0.05
96 70 0.85
97 8 0.10
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (97 bp):
CTTTCAAAGCCCACACAAGTTAGTGACAACCTCTTCAAAAGCCCACACAAGTTGGTGGCAACCCT
TTCTAAAACCCACACAAGTTGGTGGCAACCTT
Found at i:926065 original size:43 final size:43
Alignment explanation
Indices: 926005--926136 Score: 178
Period size: 43 Copynumber: 3.1 Consensus size: 43
925995 GGCATTTCCT
* *
926005 TTTAAG-CTCAATGTCGCTGGGCTTGAATTAGCACATTGGCACC
1 TTTAAGTC-CAATATCGCTGGGCTTGAATCAGCACATTGGCACC
* * *
926048 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTAGCACC
1 TTTAAGTCCAATATCGCTGGGCTTGAATCAGCACATTGGCACC
*
926091 TTTAAGTCCAATATCGCT-AGCTTTGAATCAGCACATTGGCACC
1 TTTAAGTCCAATATCGCTGGGC-TTGAATCAGCACATTGGCACC
926134 TTT
1 TTT
926137 TCATTTTTAA
Statistics
Matches: 78, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
42 1 0.01
43 76 0.97
44 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (43 bp):
TTTAAGTCCAATATCGCTGGGCTTGAATCAGCACATTGGCACC
Found at i:926167 original size:51 final size:51
Alignment explanation
Indices: 926091--926418 Score: 232
Period size: 51 Copynumber: 6.2 Consensus size: 51
926081 TATTAGCACC
* *
926091 TTTAAGTCCAATATCGCTAGCTTTGAATCAGCACATTGGCACCTTTTCATT
1 TTTAAGTCCAATGTCGCTAGCCTTGAATCAGCACATTGGCACCTTTTCATT
* * **
926142 TTTAAG-CCTAATGTCGCTAGCTTTGAATCAGCACATTAGCATTTTTCTCA-T
1 TTTAAGTCC-AATGTCGCTAGCCTTGAATCAGCACATTGGCACCTTT-TCATT
* * * * * *
926193 TTTAAG-CCTAATGTCACTGGCCTTGAATCAGCAGATTAGCACCCTTATCATG
1 TTTAAGTCC-AATGTCGCTAGCCTTGAATCAGCACATTGGCA-CCTTTTCATT
* * * * * * *
926245 TTTAAGTCCAACGTCGTTGGCCTTGAATCAGCACATTGGCATCTCTACATA
1 TTTAAGTCCAATGTCGCTAGCCTTGAATCAGCACATTGGCACCTTTTCATT
* * * * *
926296 TTTAAGTCCAATATCACTAACCTTGAATCAGTATATTGGCACTTTTATCATTCTTCTCATT
1 TTTAAGTCCAATGTCGCTAGCCTTGAATCAGCACATTGGCAC------C--T-TT-TCATT
* * * *
926357 TTTAAGTCCAATGTCGCTAGCTTTGAATTAGAACATTGGCACTCTTCTT-ATC
1 TTTAAGTCCAATGTCGCTAGCCTTGAATCAGCACATTGGCAC-CTT-TTCATT
926409 TTTAAGTCCA
1 TTTAAGTCCA
926419 GGCCTTGAAT
Statistics
Matches: 219, Mismatches: 42, Indels: 31
0.75 0.14 0.11
Matches are distributed among these distances:
50 2 0.01
51 118 0.54
52 50 0.23
53 4 0.02
54 2 0.01
56 2 0.01
57 1 0.00
59 1 0.00
60 1 0.00
61 38 0.17
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.37
Consensus pattern (51 bp):
TTTAAGTCCAATGTCGCTAGCCTTGAATCAGCACATTGGCACCTTTTCATT
Found at i:926344 original size:103 final size:102
Alignment explanation
Indices: 926091--926346 Score: 277
Period size: 103 Copynumber: 2.5 Consensus size: 102
926081 TATTAGCACC
* * * *
926091 TTTAAGTCCAATATCGCTAGCTTTGAATCAGCACATTGGCACCTTT-TCATTTTTAAGCCTAATG
1 TTTAAGTCCAATATCACTAGCCTTGAATCAGCACATTGGCACCTTTATCATGTTTAAGCCTAACG
* *
926155 TCGCTAGCTTTGAATCAGCACATTAGCATTTTTCTCAT
66 TCGCTAGCCTTGAATCAGCACATTAGCA-TTCTCTCAT
* * * * *
926193 TTTAAG-CCTAATGTCACTGGCCTTGAATCAGCAGATTAGCACCCTTATCATGTTTAAGTCC-AA
1 TTTAAGTCC-AATATCACTAGCCTTGAATCAGCACATTGGCACCTTTATCATGTTTAAG-CCTAA
* * *
926256 CGTCGTTGGCCTTGAATCAGCACATTGGCA-TCTCTACAT
64 CGTCGCTAGCCTTGAATCAGCACATTAGCATTCTCT-CAT
* * * *
926295 ATTTAAGTCCAATATCACTAACCTTGAATCAGTATATTGGCACTTTTATCAT
1 -TTTAAGTCCAATATCACTAGCCTTGAATCAGCACATTGGCACCTTTATCAT
926347 TCTTCTCATT
Statistics
Matches: 126, Mismatches: 22, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
101 6 0.05
102 39 0.31
103 77 0.61
104 4 0.03
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (102 bp):
TTTAAGTCCAATATCACTAGCCTTGAATCAGCACATTGGCACCTTTATCATGTTTAAGCCTAACG
TCGCTAGCCTTGAATCAGCACATTAGCATTCTCTCAT
Found at i:927191 original size:17 final size:17
Alignment explanation
Indices: 927169--927227 Score: 64
Period size: 18 Copynumber: 3.4 Consensus size: 17
927159 TTTTTTCTAT
927169 ATAAAATTAAAATAATA
1 ATAAAATTAAAATAATA
* *
927186 ATAAAATGAAAACAATCA
1 ATAAAATTAAAATAAT-A
* *
927204 AAAAAATTAAAATCAAAA
1 ATAAAATTAAAAT-AATA
927222 ATAAAA
1 ATAAAA
927228 AAAAAATTAA
Statistics
Matches: 33, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
17 14 0.42
18 17 0.52
19 2 0.06
ACGTcount: A:0.73, C:0.05, G:0.02, T:0.20
Consensus pattern (17 bp):
ATAAAATTAAAATAATA
Found at i:927215 original size:18 final size:17
Alignment explanation
Indices: 927171--927215 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
927161 TTTTCTATAT
* *
927171 AAAATTAAAATAATAAT
1 AAAATTAAAACAATAAA
*
927188 AAAATGAAAACAATCAAA
1 AAAATTAAAACAAT-AAA
927206 AAAATTAAAA
1 AAAATTAAAA
927216 TCAAAAATAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
17 12 0.52
18 11 0.48
ACGTcount: A:0.73, C:0.04, G:0.02, T:0.20
Consensus pattern (17 bp):
AAAATTAAAACAATAAA
Found at i:929610 original size:158 final size:158
Alignment explanation
Indices: 929321--929741 Score: 505
Period size: 158 Copynumber: 2.7 Consensus size: 158
929311 CCTCATTTGC
* * * *
929321 ATCGATTTTCCACAATCAGGGATACTCTAACCCCGTTATTTTTGAGAGGATACTCCAACCCCGA-
1 ATCGATTTTCCATAATCAGGGATACTCCAACCCTGTTATTTTCGAGAGGATACTCCAACCCCGAT
* ** * * *
929385 TTTATTTTTAAAATATTAATTTTTCACCATCGGGGATATTCTAGCCCTGTAATTTTCGAGGGTAT
66 TTTATTTATAAAATATCGATTTTTCACCATCGAGGATACTCTAACCCTGTAATTTTCGAGGGTAT
929450 ACTCCAA-CCTC-GATTTTGTTTCCAAAAT
131 ACTCCAATCC-CAG-TTTTGTTTCCAAAAT
* * * *
929478 ATCGATTTTTCATAATCGGGGATACTCCAACCCTGTTATTTCCGATG-GGATACTCCAATCCCGA
1 ATCGATTTTCCATAATCAGGGATACTCCAACCCTGTTATTTTCGA-GAGGATACTCCAACCCCGA
* * * **
929542 TTTTATTTCTAAAATATCGATTTTCCACCATCGAGGATACTCTAACCCTGTTATTTTTTAGGAG-
65 TTTTATTTATAAAATATCGATTTTTCACCATCGAGGATACTCTAACCCTGTAATTTTCGAGG-GT
929606 ATACTCCAATCCCAGTTTTGTTTCCAAAAT
129 ATACTCCAATCCCAGTTTTGTTTCCAAAAT
* * * *
929636 ATCAATTTTCCATAATCAAGGATACTCCAA-TCTCGTTATTTTCGAGAGGATACACCAACCCCGA
1 ATCGATTTTCCATAATCAGGGATACTCCAACCCT-GTTATTTTCGAGAGGATACTCCAACCCCGA
* * *
929700 TTTTTTTTATAAAATACCGATTTTTCACAATC-AGGGATACTC
65 TTTTATTTATAAAATATCGATTTTTCACCATCGA-GGATACTC
929742 CAACGGTATT
Statistics
Matches: 225, Mismatches: 31, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
157 58 0.26
158 163 0.72
159 4 0.02
ACGTcount: A:0.28, C:0.23, G:0.13, T:0.36
Consensus pattern (158 bp):
ATCGATTTTCCATAATCAGGGATACTCCAACCCTGTTATTTTCGAGAGGATACTCCAACCCCGAT
TTTATTTATAAAATATCGATTTTTCACCATCGAGGATACTCTAACCCTGTAATTTTCGAGGGTAT
ACTCCAATCCCAGTTTTGTTTCCAAAAT
Found at i:929742 original size:79 final size:78
Alignment explanation
Indices: 929321--929745 Score: 419
Period size: 79 Copynumber: 5.4 Consensus size: 78
929311 CCTCATTTGC
* * *
929321 ATCGATTTTCCACAATCAGGGATACTCTAACCCCGTTATTTTTGAGAGGATACTCCAACCCCGAT
1 ATCGATTTTCCACAATCAGGGATACTCCAACCCTGTTATTTTCGAG-GGATACTCCAACCCCGAT
929386 TTAT-TTT-TAAAAT
65 TT-TGTTTCTAAAAT
** * * * * * * * *
929399 ATTAATTTTTCACCATCGGGGATATTCTAGCCCTGTAATTTTCGAGGGTATACTCCAACCTCGAT
1 ATCGATTTTCCACAATCAGGGATACTCCAACCCTGTTATTTTCGAGGG-ATACTCCAACCCCGAT
*
929464 TTTGTTTCCAAAAT
65 TTTGTTTCTAAAAT
* * * * *
929478 ATCGATTTTTCATAATCGGGGATACTCCAACCCTGTTATTTCCGATGGGATACTCCAATCCCGAT
1 ATCGATTTTCCACAATCAGGGATACTCCAACCCTGTTATTTTCGA-GGGATACTCCAACCCCGAT
*
929543 TTTATTTCTAAAAT
65 TTTGTTTCTAAAAT
* * ** *
929557 ATCGATTTTCCACCATC-GAGGATACTCTAACCCTGTTATTTTTTAGGAGATACTCCAATCCC-A
1 ATCGATTTTCCACAATCAG-GGATACTCCAACCCTGTTATTTTCGAGG-GATACTCCAACCCCGA
*
929620 GTTTTGTTTCCAAAAT
64 -TTTTGTTTCTAAAAT
* * * * *
929636 ATCAATTTTCCATAATCAAGGATACTCCAA-TCTCGTTATTTTCGAGAGGATACACCAACCCCGA
1 ATCGATTTTCCACAATCAGGGATACTCCAACCCT-GTTATTTTCGAG-GGATACTCCAACCCCGA
* *
929700 TTTTTTTTATAAAAT
64 TTTTGTTTCTAAAAT
* *
929715 ACCGATTTTTCACAATCAGGGATACTCCAAC
1 ATCGATTTTCCACAATCAGGGATACTCCAAC
929746 GGTATTCATC
Statistics
Matches: 283, Mismatches: 52, Indels: 22
0.79 0.15 0.06
Matches are distributed among these distances:
77 3 0.01
78 62 0.22
79 213 0.75
80 5 0.02
ACGTcount: A:0.28, C:0.23, G:0.13, T:0.36
Consensus pattern (78 bp):
ATCGATTTTCCACAATCAGGGATACTCCAACCCTGTTATTTTCGAGGGATACTCCAACCCCGATT
TTGTTTCTAAAAT
Found at i:931570 original size:26 final size:25
Alignment explanation
Indices: 931533--931619 Score: 69
Period size: 25 Copynumber: 3.6 Consensus size: 25
931523 AATAAAAAAT
*
931533 TTTAAAAT-TATTTTTATATTAATA
1 TTTAATATATATTTTTATATTAATA
931557 TTTACATATATA-TTTTATAATTAA-A
1 TTTA-ATATATATTTTTAT-ATTAATA
*
931582 TTTAA-ATACAATTTTT-T-TTAATTA
1 TTTAATATA-TATTTTTATATTAA-TA
*
931606 TTTAATATCTATTT
1 TTTAATATATATTT
931620 GACTGGATCG
Statistics
Matches: 51, Mismatches: 4, Indels: 16
0.72 0.06 0.23
Matches are distributed among these distances:
22 4 0.08
23 3 0.06
24 17 0.33
25 20 0.39
26 7 0.14
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.57
Consensus pattern (25 bp):
TTTAATATATATTTTTATATTAATA
Found at i:931572 original size:25 final size:24
Alignment explanation
Indices: 931544--931619 Score: 68
Period size: 24 Copynumber: 3.1 Consensus size: 24
931534 TTAAAATTAT
931544 TTTTATATTAATATTTACATATATA
1 TTTTATATTAATATTTA-ATATATA
*
931569 TTTTATAATTAA-ATTTAA-ATACAA
1 TTTTAT-ATTAATATTTAATATA-TA
* *
931593 TTTT-TTTTAATTATTTAATATCTA
1 TTTTATATTAA-TATTTAATATATA
931617 TTT
1 TTT
931620 GACTGGATCG
Statistics
Matches: 42, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
22 4 0.10
23 4 0.10
24 16 0.38
25 13 0.31
26 5 0.12
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (24 bp):
TTTTATATTAATATTTAATATATA
Found at i:931873 original size:26 final size:26
Alignment explanation
Indices: 931816--931873 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
931806 TAAATTTCTA
931816 TTAATTTATTGTTATCAATTGAAATT
1 TTAATTTATTGTTATCAATTGAAATT
* * **
931842 TCAATTT-TTTTTACTCAATTGAGTTT
1 TTAATTTATTGTTA-TCAATTGAAATT
931868 TTAATT
1 TTAATT
931874 AGACAAAAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
25 5 0.19
26 21 0.81
ACGTcount: A:0.29, C:0.07, G:0.07, T:0.57
Consensus pattern (26 bp):
TTAATTTATTGTTATCAATTGAAATT
Found at i:932259 original size:3 final size:3
Alignment explanation
Indices: 932245--932280 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
932235 ATAAACATAA
*
932245 TAT TAT TGT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
932281 CTTCCATTGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:933375 original size:34 final size:34
Alignment explanation
Indices: 933262--933380 Score: 98
Period size: 34 Copynumber: 3.3 Consensus size: 34
933252 AATTTTTTAG
*
933262 TTTTTAATATATATTTTATTATTTAATATAAATATAA
1 TTTTT-ATTTATA-TTTATTATTTAATATAAATAT-A
* * *
933299 TTTAATAATTT-T-TTGATTATCATTCAACATAAATATA
1 TTT--TTATTTATATTTATTAT--TT-AATATAAATATA
*
933336 ATTTTATTTATATTTATTATTTAATATAAATATA
1 TTTTTATTTATATTTATTATTTAATATAAATATA
*
933370 TTTTTAATTAT
1 TTTTTATTTAT
933381 TTATCTCATA
Statistics
Matches: 65, Mismatches: 10, Indels: 17
0.71 0.11 0.18
Matches are distributed among these distances:
34 20 0.31
35 14 0.22
36 1 0.02
37 16 0.25
38 13 0.20
39 1 0.02
ACGTcount: A:0.40, C:0.03, G:0.01, T:0.56
Consensus pattern (34 bp):
TTTTTATTTATATTTATTATTTAATATAAATATA
Found at i:933903 original size:16 final size:16
Alignment explanation
Indices: 933882--933912 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
933872 ATTGTCAAAA
933882 ATATCTTTCGATCCCC
1 ATATCTTTCGATCCCC
933898 ATATCTTTCGATCCC
1 ATATCTTTCGATCCC
933913 TCCATCTGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.35, G:0.06, T:0.39
Consensus pattern (16 bp):
ATATCTTTCGATCCCC
Found at i:934994 original size:2 final size:2
Alignment explanation
Indices: 934987--935018 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
934977 TCTCATCTTA
934987 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
935019 GAATTTTATC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:935178 original size:19 final size:20
Alignment explanation
Indices: 935156--935197 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
935146 TTAAATTAGT
935156 ACATAATATATA-AATTTTA
1 ACATAATATATATAATTTTA
**
935175 ACATGTTATATATAATTTTA
1 ACATAATATATATAATTTTA
935195 ACA
1 ACA
935198 CATTCATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.48, C:0.07, G:0.02, T:0.43
Consensus pattern (20 bp):
ACATAATATATATAATTTTA
Found at i:935549 original size:16 final size:17
Alignment explanation
Indices: 935528--935565 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
935518 TACATTCATG
935528 TTTTAT-TGGTATTATT
1 TTTTATCTGGTATTATT
* *
935544 TTTTATCTTGTATTGTT
1 TTTTATCTGGTATTATT
935561 TTTTA
1 TTTTA
935566 ATTATTTTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 6 0.32
17 13 0.68
ACGTcount: A:0.16, C:0.03, G:0.11, T:0.71
Consensus pattern (17 bp):
TTTTATCTGGTATTATT
Found at i:936638 original size:25 final size:23
Alignment explanation
Indices: 936610--936678 Score: 72
Period size: 25 Copynumber: 2.9 Consensus size: 23
936600 TTAAAATTAT
936610 TTTTATATTAATATTTACATATACA
1 TTTTATATTAATATTTA-ATATA-A
936635 TTTTATAATTAA-ATTTAAATATAA
1 TTTTAT-ATTAATATTT-AATATAA
936659 TTTT-T-TTAATTATTTAATAT
1 TTTTATATTAA-TATTTAATAT
936679 CTATTCGACT
Statistics
Matches: 40, Mismatches: 0, Indels: 11
0.78 0.00 0.22
Matches are distributed among these distances:
21 4 0.10
22 5 0.12
23 5 0.12
24 5 0.12
25 15 0.38
26 6 0.15
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.57
Consensus pattern (23 bp):
TTTTATATTAATATTTAATATAA
Found at i:936942 original size:26 final size:26
Alignment explanation
Indices: 936885--936942 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
936875 TAAATTTCTA
936885 TTAATTTATTGTTATCAATTGAAATT
1 TTAATTTATTGTTATCAATTGAAATT
* * **
936911 TCAATTT-TTTTTACTCAATTGAGTTT
1 TTAATTTATTGTTA-TCAATTGAAATT
936937 TTAATT
1 TTAATT
936943 AGACAAAAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
25 5 0.19
26 21 0.81
ACGTcount: A:0.29, C:0.07, G:0.07, T:0.57
Consensus pattern (26 bp):
TTAATTTATTGTTATCAATTGAAATT
Found at i:937328 original size:3 final size:3
Alignment explanation
Indices: 937314--937352 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
937304 ATAAACATAA
* *
937314 TAT TAT TGT TAT TAT TAT TAT TAT TAT TAT TAC TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
937353 CTTCCATTGT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:938452 original size:28 final size:28
Alignment explanation
Indices: 938282--938452 Score: 68
Period size: 28 Copynumber: 5.9 Consensus size: 28
938272 TAAATTGTAT
* *
938282 TTTAATATAAATA-ATATTTTAATAATAA
1 TTTAATATAAATATAT-TTTTAATTATTA
* * *
938310 TTTAATATAACTATAATTTT--TTAGT-
1 TTTAATATAAATATATTTTTAATTATTA
* * *
938335 TTTAA-ATATATAT-TTTATTATTTAATA
1 TTTAATATAAATATATTT-TTAATTATTA
* * *
938362 -TAAATATAATTTAATAATTTTTTAATTATCA
1 TTTAATATAA-AT-AT-A-TTTTTAATTATTA
* *
938393 TTCAACATAAATATAGTTTTATTTATATTTATTA
1 TTTAATATAAATATA---TT-TTTA-A-TTATTA
938427 TTTAATATAAATATATTTTTAATTAT
1 TTTAATATAAATATATTTTTAATTAT
938453 ATCATATATA
Statistics
Matches: 105, Mismatches: 21, Indels: 34
0.66 0.13 0.21
Matches are distributed among these distances:
23 2 0.02
24 8 0.08
25 5 0.05
26 9 0.09
27 3 0.03
28 21 0.20
29 5 0.05
30 6 0.06
31 13 0.12
32 14 0.13
33 1 0.01
34 18 0.17
ACGTcount: A:0.43, C:0.02, G:0.01, T:0.54
Consensus pattern (28 bp):
TTTAATATAAATATATTTTTAATTATTA
Found at i:938453 original size:18 final size:18
Alignment explanation
Indices: 938399--938453 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 18
938389 ATCATTCAAC
*
938399 ATAAATATAGTTTT-ATT
1 ATAAATATATTTTTAATT
* *
938416 -TATATTTATTATTTAA-T
1 ATAAATATATT-TTTAATT
938433 ATAAATATATTTTTAATT
1 ATAAATATATTTTTAATT
938451 ATA
1 ATA
938454 TCATATATAT
Statistics
Matches: 29, Mismatches: 5, Indels: 7
0.71 0.12 0.17
Matches are distributed among these distances:
16 7 0.24
17 9 0.31
18 13 0.45
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (18 bp):
ATAAATATATTTTTAATT
Found at i:938453 original size:34 final size:34
Alignment explanation
Indices: 938334--938454 Score: 111
Period size: 34 Copynumber: 3.4 Consensus size: 34
938324 AATTTTTTAG
*
938334 TTTTAAATATATATTTTATTATTTAATATAAATATAA
1 TTTTTAAT-TATA-TTTATTATTTAATATAAATAT-A
* *
938371 TTTAATAATT-T-TTTAATTATCATTCAACATAAATATA
1 TTT-TTAATTATATTT-ATTAT--TT-AATATAAATATA
* *
938408 GTTTTATTTATATTTATTATTTAATATAAATATA
1 TTTTTAATTATATTTATTATTTAATATAAATATA
938442 TTTTTAATTATAT
1 TTTTTAATTATAT
938455 CATATATATT
Statistics
Matches: 68, Mismatches: 9, Indels: 17
0.72 0.10 0.18
Matches are distributed among these distances:
34 25 0.37
35 7 0.10
36 5 0.07
37 15 0.22
38 16 0.24
ACGTcount: A:0.41, C:0.02, G:0.01, T:0.55
Consensus pattern (34 bp):
TTTTTAATTATATTTATTATTTAATATAAATATA
Found at i:938586 original size:21 final size:21
Alignment explanation
Indices: 938562--938603 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
938552 ATATCACCAC
**
938562 TATAATATTTAATTTTATTAT
1 TATAATAACTAATTTTATTAT
*
938583 TATAATAACTAGTTTTATTAT
1 TATAATAACTAATTTTATTAT
938604 CACGTTTTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.57
Consensus pattern (21 bp):
TATAATAACTAATTTTATTAT
Found at i:939085 original size:19 final size:20
Alignment explanation
Indices: 939063--939109 Score: 69
Period size: 19 Copynumber: 2.4 Consensus size: 20
939053 TATTATAATT
**
939063 TTAATTTTTTAAATAT-TTA
1 TTAATTTTCGAAATATGTTA
939082 TTAATTTTCGAAATATGTTA
1 TTAATTTTCGAAATATGTTA
939102 TTAATTTT
1 TTAATTTT
939110 ATTATATATA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 14 0.56
20 11 0.44
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.60
Consensus pattern (20 bp):
TTAATTTTCGAAATATGTTA
Found at i:941026 original size:30 final size:30
Alignment explanation
Indices: 940974--941031 Score: 73
Period size: 29 Copynumber: 1.9 Consensus size: 30
940964 TAATCTCGAT
940974 TTTTATATAAATTAATAATAAAA-ATAATA
1 TTTTATATAAATTAATAATAAAATATAATA
* **
941003 TTTTATTTAAATTTAATTTTAAAATATAA
1 TTTTATATAAA-TTAATAATAAAATATAA
941032 ATATAATATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 10 0.42
30 10 0.42
31 4 0.17
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (30 bp):
TTTTATATAAATTAATAATAAAATATAATA
Found at i:941957 original size:34 final size:34
Alignment explanation
Indices: 941911--942095 Score: 248
Period size: 34 Copynumber: 5.5 Consensus size: 34
941901 GTAAAAACCA
*
941911 CCATTTAATCAACAATGGCAACCTACCAAATCTC
1 CCATTTAATCAACAATGGTAACCTACCAAATCTC
* * *
941945 TCATTTAGTCAACAATGGTAAACC-ACCAAATCAC
1 CCATTTAATCAACAATGGT-AACCTACCAAATCTC
* *
941979 CCATTTAATCAATAATGGTAAGCTACCAAATCTC
1 CCATTTAATCAACAATGGTAACCTACCAAATCTC
* *
942013 CCATTTAATCAACAATGGTAAGCTACCAAATTTC
1 CCATTTAATCAACAATGGTAACCTACCAAATCTC
* * *
942047 CCATTTAGTCAACAATGGTAAACTACCAAATC-A
1 CCATTTAATCAACAATGGTAACCTACCAAATCTC
942080 CCATTTAATCAACAAT
1 CCATTTAATCAACAAT
942096 TCTCCCACTT
Statistics
Matches: 133, Mismatches: 16, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
33 18 0.14
34 111 0.83
35 4 0.03
ACGTcount: A:0.40, C:0.26, G:0.08, T:0.26
Consensus pattern (34 bp):
CCATTTAATCAACAATGGTAACCTACCAAATCTC
Found at i:946552 original size:34 final size:34
Alignment explanation
Indices: 946506--946690 Score: 248
Period size: 34 Copynumber: 5.5 Consensus size: 34
946496 GTAAAAACCA
*
946506 CCATTTAATCAACAATGGCAACCTACCAAATCTC
1 CCATTTAATCAACAATGGTAACCTACCAAATCTC
* * *
946540 TCATTTAGTCAACAATGGTAAACC-ACCAAATCAC
1 CCATTTAATCAACAATGGT-AACCTACCAAATCTC
* *
946574 CCATTTAATCAATAATGGTAAGCTACCAAATCTC
1 CCATTTAATCAACAATGGTAACCTACCAAATCTC
* *
946608 CCATTTAATCAACAATGGTAAGCTACCAAATTTC
1 CCATTTAATCAACAATGGTAACCTACCAAATCTC
* * *
946642 CCATTTAGTCAACAATGGTAAACTACCAAATC-A
1 CCATTTAATCAACAATGGTAACCTACCAAATCTC
946675 CCATTTAATCAACAAT
1 CCATTTAATCAACAAT
946691 ATCTATAATG
Statistics
Matches: 133, Mismatches: 16, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
33 18 0.14
34 111 0.83
35 4 0.03
ACGTcount: A:0.40, C:0.26, G:0.08, T:0.26
Consensus pattern (34 bp):
CCATTTAATCAACAATGGTAACCTACCAAATCTC
Found at i:948337 original size:21 final size:20
Alignment explanation
Indices: 948298--948341 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
948288 TGATAAATAT
*
948298 ATTATTATAAAATAATTAAA
1 ATTATCATAAAATAATTAAA
*
948318 ATTATCATATAAATATTTAAA
1 ATTATCATA-AAATAATTAAA
948339 ATT
1 ATT
948342 TTTTAAAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 8 0.38
21 13 0.62
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (20 bp):
ATTATCATAAAATAATTAAA
Found at i:948365 original size:17 final size:17
Alignment explanation
Indices: 948324--948367 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
948314 TAAAATTATC
*
948324 ATATAAATATTTAAAATT
1 ATATAAA-ATTTAAAACT
* *
948342 TTTTAAAATTTAAAACT
1 ATATAAAATTTAAAACT
948359 ATATAAAAT
1 ATATAAAAT
948368 GAATTTATTC
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
17 16 0.76
18 5 0.24
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (17 bp):
ATATAAAATTTAAAACT
Found at i:951169 original size:2 final size:2
Alignment explanation
Indices: 951157--951199 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
951147 AGAGCGAGCA
*
951157 AG AG CG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
951199 A
1 A
951200 CGTAGTGCAC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.02, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:951494 original size:21 final size:21
Alignment explanation
Indices: 951439--951494 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
951429 TAAATATAAA
* *
951439 AAAACATAACATAAAAAAATT
1 AAAATATAACATAAAAAAAAT
*
951460 AAAATATAATATAATAAAAAAT
1 AAAATATAACATAA-AAAAAAT
*
951482 AATAT-TAACATAA
1 AAAATATAACATAA
951495 CACGAATAGA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
21 19 0.66
22 10 0.34
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.25
Consensus pattern (21 bp):
AAAATATAACATAAAAAAAAT
Found at i:951667 original size:127 final size:126
Alignment explanation
Indices: 951519--951763 Score: 373
Period size: 127 Copynumber: 1.9 Consensus size: 126
951509 TAATATTTTA
* *
951519 AAATCTATATAAAATAAATTATTAATATATTACGAATATGAATAAGATCATACATAATATAAAAT
1 AAATCTATATAAAATAAATTATTAATATATTACGAATATGAACAAGATCACACATAATATAAAAT
* * *
951584 TAAAAGTTATTTAAATAATTTTAATTATACTTGATAATTTTAAATATAGTATGAATGTTTCG
66 TAAAAGTTATTTAAATAATTTTAATTACACTT-ATAATTTCAAATATAATATGAATGTTTCG
* * * **
951646 AAATCTATATAAAATAAATTATTAGTGTGTTACGAATATGAACAAGATGGCACATAATATAAAAT
1 AAATCTATATAAAATAAATTATTAATATATTACGAATATGAACAAGATCACACATAATATAAAAT
* *
951711 TAAGAGTTATTTAAATATTTTTAATTACACTTATAATTTCAAATATAATATGA
66 TAAAAGTTATTTAAATAATTTTAATTACACTTATAATTTCAAATATAATATGA
951764 TTAAATAATA
Statistics
Matches: 106, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
126 19 0.18
127 87 0.82
ACGTcount: A:0.47, C:0.06, G:0.08, T:0.39
Consensus pattern (126 bp):
AAATCTATATAAAATAAATTATTAATATATTACGAATATGAACAAGATCACACATAATATAAAAT
TAAAAGTTATTTAAATAATTTTAATTACACTTATAATTTCAAATATAATATGAATGTTTCG
Found at i:952382 original size:21 final size:22
Alignment explanation
Indices: 952340--952383 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
952330 ATTATTATAG
** *
952340 TTATTTGATTTTAATTTTAAAT
1 TTATTTGATTTTAAAATCAAAT
952362 TTATTT-ATTTTAAAATCAAAT
1 TTATTTGATTTTAAAATCAAAT
952383 T
1 T
952384 ACTGTATATG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.59
Consensus pattern (22 bp):
TTATTTGATTTTAAAATCAAAT
Found at i:953030 original size:32 final size:33
Alignment explanation
Indices: 952989--953059 Score: 90
Period size: 32 Copynumber: 2.2 Consensus size: 33
952979 TATTATCTAT
** * *
952989 TTATATAAATTTCGATATATTAATA-ATTTATG
1 TTATATAAATTTAAATATATTAATATATTCATA
*
953021 TTATATAAATTTAAATATATTTATATATTCATA
1 TTATATAAATTTAAATATATTAATATATTCATA
953054 TTATAT
1 TTATAT
953060 TCATGATATT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
32 22 0.67
33 11 0.33
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.52
Consensus pattern (33 bp):
TTATATAAATTTAAATATATTAATATATTCATA
Found at i:954488 original size:22 final size:23
Alignment explanation
Indices: 954450--954493 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
954440 AATTATATTT
*
954450 TTAAATAATAAGT-AAAATCATA
1 TTAAAAAATAAGTAAAAATCATA
954472 TTAAAAAATAA-TAAAAAATCAT
1 TTAAAAAATAAGT-AAAAATCAT
954494 TAAAAGAGCC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 1 0.05
22 10 0.53
23 8 0.42
ACGTcount: A:0.64, C:0.05, G:0.02, T:0.30
Consensus pattern (23 bp):
TTAAAAAATAAGTAAAAATCATA
Found at i:954495 original size:21 final size:23
Alignment explanation
Indices: 954452--954498 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 23
954442 TTATATTTTT
954452 AAATAATAAGTAAAATCATATTAAA
1 AAATAATAAG-AAAATCA-ATTAAA
954477 AAATAATAA-AAAATC-ATTAAA
1 AAATAATAAGAAAATCAATTAAA
954498 A
1 A
954499 GAGCCGTGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 7 0.32
23 6 0.27
25 9 0.41
ACGTcount: A:0.68, C:0.04, G:0.02, T:0.26
Consensus pattern (23 bp):
AAATAATAAGAAAATCAATTAAA
Found at i:960907 original size:16 final size:16
Alignment explanation
Indices: 960882--960925 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
960872 AGTAGAAATC
*
960882 AAAAATTAAAAAATAA
1 AAAAAATAAAAAATAA
*
960898 AAAAAAT-AAAAATTA
1 AAAAAATAAAAAATAA
*
960913 ATAAAATAAAAAA
1 AAAAAATAAAAAA
960926 AATCATAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 13 0.54
16 11 0.46
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (16 bp):
AAAAAATAAAAAATAA
Found at i:960912 original size:23 final size:25
Alignment explanation
Indices: 960877--960935 Score: 95
Period size: 24 Copynumber: 2.4 Consensus size: 25
960867 TAATAAGTAG
960877 AAATCAAAAATTAA-AAAATAAAAA
1 AAATCAAAAATTAATAAAATAAAAA
960901 AAAT-AAAAATTAATAAAATAAAAA
1 AAATCAAAAATTAATAAAATAAAAA
960925 AAATCATAAAA
1 AAATCA-AAAA
960936 AACATGCAAG
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
23 9 0.28
24 18 0.56
25 1 0.03
26 4 0.12
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (25 bp):
AAATCAAAAATTAATAAAATAAAAA
Found at i:967886 original size:19 final size:20
Alignment explanation
Indices: 967842--967896 Score: 85
Period size: 20 Copynumber: 2.8 Consensus size: 20
967832 CTGCCAATCT
**
967842 CATGTATCGATACAATTGTC
1 CATGTATCGATACAATTGAA
967862 CATGTATCGATACAATT-AA
1 CATGTATCGATACAATTGAA
967881 CATGTATCGATACAAT
1 CATGTATCGATACAAT
967897 GTATCGATAC
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
19 16 0.48
20 17 0.52
ACGTcount: A:0.36, C:0.18, G:0.13, T:0.33
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:967900 original size:13 final size:13
Alignment explanation
Indices: 967882--967908 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
967872 TACAATTAAC
967882 ATGTATCGATACA
1 ATGTATCGATACA
967895 ATGTATCGATACA
1 ATGTATCGATACA
967908 A
1 A
967909 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:968891 original size:13 final size:13
Alignment explanation
Indices: 968873--968898 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
968863 CAATTTTTTG
968873 TGTATCGATACAT
1 TGTATCGATACAT
968886 TGTATCGATACAT
1 TGTATCGATACAT
968899 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:968910 original size:32 final size:33
Alignment explanation
Indices: 968853--968916 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
968843 TACAAGCCAA
**
968853 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTTGTGTATCGATACAT
968886 TGTATCGATAC-ATACTTTGTGTATCGATACA
1 TGTATCGATACAATACTTTGTGTATCGATACA
968917 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAT
Found at i:971471 original size:13 final size:13
Alignment explanation
Indices: 971455--971490 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
971445 AATCCCCCTA
971455 TATCGATACAGTG
1 TATCGATACAGTG
*
971468 TATCGATACATTG
1 TATCGATACAGTG
971481 TATCGATACA
1 TATCGATACA
971491 AAGAAAAATG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (13 bp):
TATCGATACAGTG
Found at i:973578 original size:15 final size:15
Alignment explanation
Indices: 973558--973587 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
973548 GTTCATCAAT
973558 TTCGTTTGGAGCTTC
1 TTCGTTTGGAGCTTC
*
973573 TTCGTTTTGAGCTTC
1 TTCGTTTGGAGCTTC
973588 CTCATTTTGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.20, G:0.23, T:0.50
Consensus pattern (15 bp):
TTCGTTTGGAGCTTC
Found at i:975638 original size:19 final size:18
Alignment explanation
Indices: 975597--975638 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
975587 ATTTCAACAA
*
975597 CTTTTAATTTATTATCTT
1 CTTTTAATTTATTATCGT
975615 CTTTTAATTT-TGTGATCGT
1 CTTTTAATTTAT-T-ATCGT
975634 CTTTT
1 CTTTT
975639 TATGCTTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 1 0.05
18 11 0.52
19 9 0.43
ACGTcount: A:0.17, C:0.12, G:0.07, T:0.64
Consensus pattern (18 bp):
CTTTTAATTTATTATCGT
Found at i:977681 original size:13 final size:13
Alignment explanation
Indices: 977663--977688 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
977653 CAATTTTTTG
977663 TGTATCGATACAT
1 TGTATCGATACAT
977676 TGTATCGATACAT
1 TGTATCGATACAT
977689 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:977700 original size:32 final size:33
Alignment explanation
Indices: 977643--977706 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
977633 TACAAGCCAA
**
977643 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTTGTGTATCGATACAT
977676 TGTATCGATAC-ATACTTTGTGTATCGATACA
1 TGTATCGATACAATACTTTGTGTATCGATACA
977707 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAT
Found at i:980216 original size:20 final size:23
Alignment explanation
Indices: 980191--980237 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
980181 TTTCTTTGAT
980191 GATTTTG-A-TGAAAAA-TGAAA
1 GATTTTGAAGTGAAAAAGTGAAA
980211 GATTTTGAAGTGAAAAAGTGAAA
1 GATTTTGAAGTGAAAAAGTGAAA
980234 -ATTT
1 GATTT
980238 GTGGAAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.29
21 1 0.04
22 11 0.46
23 5 0.21
ACGTcount: A:0.47, C:0.00, G:0.21, T:0.32
Consensus pattern (23 bp):
GATTTTGAAGTGAAAAAGTGAAA
Found at i:986452 original size:33 final size:34
Alignment explanation
Indices: 986415--986511 Score: 112
Period size: 33 Copynumber: 2.9 Consensus size: 34
986405 ACAAGCTATG
*
986415 TATCGATACAATT-CATCATGTATT-AGTACAATA
1 TATCGATACAATTGCACCATGTATTGA-TACAATA
* *
986448 TATCGATAC-ATTGTACCATGTATTGATACAATG
1 TATCGATACAATTGCACCATGTATTGATACAATA
* *
986481 TATCGATAC-ATTGTACCATGTATCGATACAA
1 TATCGATACAATTGCACCATGTATTGATACAA
986512 ACAATGGAAG
Statistics
Matches: 58, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
32 3 0.05
33 54 0.93
34 1 0.02
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.35
Consensus pattern (34 bp):
TATCGATACAATTGCACCATGTATTGATACAATA
Found at i:986463 original size:20 final size:20
Alignment explanation
Indices: 986440--986482 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
986430 TCATGTATTA
*
986440 GTACAATATATCGATACATT
1 GTACAATATATCGATACAAT
* * *
986460 GTACCATGTATTGATACAAT
1 GTACAATATATCGATACAAT
986480 GTA
1 GTA
986483 TCGATACATT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.35
Consensus pattern (20 bp):
GTACAATATATCGATACAAT
Found at i:986501 original size:20 final size:20
Alignment explanation
Indices: 986448--986510 Score: 68
Period size: 20 Copynumber: 3.5 Consensus size: 20
986438 TAGTACAATA
986448 TATCGATACATTGTACCATG
1 TATCGATACATTGTACCATG
*
986468 TATTGATAC-----A--ATG
1 TATCGATACATTGTACCATG
986481 TATCGATACATTGTACCATG
1 TATCGATACATTGTACCATG
986501 TATCGATACA
1 TATCGATACA
986511 AACAATGGAA
Statistics
Matches: 34, Mismatches: 2, Indels: 14
0.68 0.04 0.28
Matches are distributed among these distances:
13 11 0.32
15 1 0.03
18 1 0.03
20 21 0.62
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.35
Consensus pattern (20 bp):
TATCGATACATTGTACCATG
Found at i:986584 original size:19 final size:20
Alignment explanation
Indices: 986541--986594 Score: 74
Period size: 19 Copynumber: 2.8 Consensus size: 20
986531 TGCCAATCTC
* **
986541 ATGTATCGATACAATTGTCT
1 ATGTATTGATACAATTGAAT
986561 ATGTATTGATACAATT-AAT
1 ATGTATTGATACAATTGAAT
986580 ATGTATTGATACAAT
1 ATGTATTGATACAAT
986595 GTATCGATAC
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
19 16 0.52
20 15 0.48
ACGTcount: A:0.37, C:0.09, G:0.13, T:0.41
Consensus pattern (20 bp):
ATGTATTGATACAATTGAAT
Found at i:987781 original size:12 final size:12
Alignment explanation
Indices: 987764--987790 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
987754 CCAAGTTTAA
987764 GAATTTATCCTT
1 GAATTTATCCTT
987776 GAATTTATCCTT
1 GAATTTATCCTT
987788 GAA
1 GAA
987791 AACGATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.30, C:0.15, G:0.11, T:0.44
Consensus pattern (12 bp):
GAATTTATCCTT
Found at i:1006883 original size:79 final size:80
Alignment explanation
Indices: 1006799--1006975 Score: 252
Period size: 79 Copynumber: 2.2 Consensus size: 80
1006789 AAAATAGAAT
* * ** *
1006799 CGGGGTTGGAGTTTCCCCGTGA-AAATAATGGGGTTGGAGTATC-TCCAATTATGAGAAATCAAT
1 CGGGGTTGGAGTATCCCCGTCAGAAATAACAGGGTTGGAGTATCGT-CAATTATGAAAAATCAAT
1006862 ATTTTAGGAATAAAAC
65 ATTTTAGGAATAAAAC
* *
1006878 CGGGGTTGGAGTATCCCC-TCAGAAATAACAGGGTTGGAGTATCGTCGATTGTGAAAAATCAATA
1 CGGGGTTGGAGTATCCCCGTCAGAAATAACAGGGTTGGAGTATCGTCAATTATGAAAAATCAATA
*
1006942 TTTTAGGAATAAAGC
66 TTTTAGGAATAAAAC
1006957 CGGGGTTGGAGTATCCCCG
1 CGGGGTTGGAGTATCCCCG
1006976 ATTGTGAGAA
Statistics
Matches: 87, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
78 2 0.02
79 84 0.97
80 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.27
Consensus pattern (80 bp):
CGGGGTTGGAGTATCCCCGTCAGAAATAACAGGGTTGGAGTATCGTCAATTATGAAAAATCAATA
TTTTAGGAATAAAAC
Found at i:1006962 original size:130 final size:129
Alignment explanation
Indices: 1006828--1007102 Score: 388
Period size: 130 Copynumber: 2.1 Consensus size: 129
1006818 TGAAAATAAT
* *
1006828 GGGGTTGGAGTATCTCCAATTATGAGAAATCAATATTTTAGGAATAAAACCGGGGTTGGAGTATC
1 GGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTTAGGAATAAAACCAGGGTTGGAGTATC
** ** *
1006893 CCCTCAGAAATAACAGGGTTGGAGTATCGTCGATTGTGAAAAATCAATATTTTAGGAATAAAGCC
66 CCCTCAGAAATAACAGGGTTGGAGTATCCCCGATTGTG-AAAATCAATATTTTAAAAATAAAACC
* *
1006958 GGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTAGGAATAAAACCAGGGTTGGAGTATC
1 GGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTTAGGAATAAAACCAGGGTTGGAGTATC
* ** * *** *
1007023 CCTTTGGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAATTGGTGTTTTAAAAATAAAACC
66 CCCTCAGAAATAACAGGGTTGGAGTATCCCCGATTGTGAAAATCAATATTTTAAAAATAAAACC
1007087 GGGGTTGGAGTATCCC
1 GGGGTTGGAGTATCCC
1007103 TGATTGTGAA
Statistics
Matches: 128, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
129 35 0.27
130 93 0.73
ACGTcount: A:0.32, C:0.13, G:0.27, T:0.28
Consensus pattern (129 bp):
GGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTTAGGAATAAAACCAGGGTTGGAGTATC
CCCTCAGAAATAACAGGGTTGGAGTATCCCCGATTGTGAAAATCAATATTTTAAAAATAAAACC
Found at i:1006978 original size:51 final size:51
Alignment explanation
Indices: 1006906--1007024 Score: 193
Period size: 51 Copynumber: 2.3 Consensus size: 51
1006896 TCAGAAATAA
** *
1006906 CAGGGTTGGAGTATCGTCGATTGTGAAAAATCAATATTTTAGGAATAAAGC
1 CAGGGTTGGAGTATCCCCGATTGTGAAAAATCAATATTTTAGGAATAAAAC
* *
1006957 CGGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTAGGAATAAAAC
1 CAGGGTTGGAGTATCCCCGATTGTGAAAAATCAATATTTTAGGAATAAAAC
1007008 CAGGGTTGGAGTATCCC
1 CAGGGTTGGAGTATCCC
1007025 TTTGGAAATA
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 62 1.00
ACGTcount: A:0.32, C:0.13, G:0.27, T:0.28
Consensus pattern (51 bp):
CAGGGTTGGAGTATCCCCGATTGTGAAAAATCAATATTTTAGGAATAAAAC
Found at i:1007016 original size:209 final size:209
Alignment explanation
Indices: 1006641--1007102 Score: 497
Period size: 209 Copynumber: 2.2 Consensus size: 209
1006631 ATCTCCTGAC
*
1006641 GAGAAATTTAATATTTT-GGAGATAATAA-CAGGGTTGGAGTATCCCCTAAAAAATAACGAGGTT
1 GAGAAA-TTAATATTTTAGGA-ATAA-AACCGGGGTTGGAGTATCCCCTAAAAAATAACGAGGTT
* * *
1006704 GGAGTATCCCCGATTGCGAAAAATCGATGATTTAGAAATAAGGCAAGGGTTGAAGTGTCCCCGAT
63 GGAGTATCCCCGATTGCGAAAAATCAATGATTTAGAAATAAAGCAAGGGTTGAAGTATCCCCGAT
* * * * * *
1006769 TATAGAAAATAGATGTTTCAAAAATAGAATCGGGGTTGGAGTTTCCCCGTGAAAATAATGGGGTT
128 TATAGAAAATAGATATTTCAAAAATAAAACCAGGGTTGGAGTATCCCCGTGAAAATAACGGGGTT
*
1006834 GGAGTATCTCCAATTAT
193 GGAGTATCCCCAATTAT
* * *
1006851 GAGAAATCAATATTTTAGGAATAAAACCGGGGTTGGAGTATCCCCTCAGAAATAAC-AGGGTTGG
1 GAGAAATTAATATTTTAGGAATAAAACCGGGGTTGGAGTATCCCCTAAAAAATAACGA-GGTTGG
** * * ** *
1006915 AGTATCGTCGATTGTGAAAAATCAAT-ATTTTAGGAATAAAGCCGGGGTTGGAGTATCCCCGATT
65 AGTATCCCCGATTGCGAAAAATCAATGA-TTTAGAAATAAAGCAAGGGTTGAAGTATCCCCGATT
* * ** ** *
1006979 GT-GAGAAATCA-ATATTTTAGGAATAAAACCAGGGTTGGAGTATCCCTTTGGAAATAACGGGGT
129 ATAGA-AAAT-AGATATTTCAAAAATAAAACCAGGGTTGGAGTATCCCCGTGAAAATAACGGGGT
* *
1007042 TGGAGTATCCCCGATTGT
192 TGGAGTATCCCCAATTAT
** * **
1007060 GA-AAATTGGTGTTTTAAAAATAAAACCGGGGTTGGAGTATCCC
1 GAGAAATTAATATTTTAGGAATAAAACCGGGGTTGGAGTATCCC
1007103 TGATTGTGAA
Statistics
Matches: 210, Mismatches: 36, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
208 41 0.20
209 159 0.76
210 10 0.05
ACGTcount: A:0.34, C:0.13, G:0.26, T:0.27
Consensus pattern (209 bp):
GAGAAATTAATATTTTAGGAATAAAACCGGGGTTGGAGTATCCCCTAAAAAATAACGAGGTTGGA
GTATCCCCGATTGCGAAAAATCAATGATTTAGAAATAAAGCAAGGGTTGAAGTATCCCCGATTAT
AGAAAATAGATATTTCAAAAATAAAACCAGGGTTGGAGTATCCCCGTGAAAATAACGGGGTTGGA
GTATCCCCAATTAT
Found at i:1007099 original size:78 final size:79
Alignment explanation
Indices: 1006957--1007103 Score: 224
Period size: 78 Copynumber: 1.9 Consensus size: 79
1006947 GGAATAAAGC
**
1006957 CGGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTAGGAATAAAACCAGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTAAAAATAAAACCAGGGTTGGAGTAT
1007022 CCCTTTGGAAATAA
66 CCCTTTGGAAATAA
*** * *
1007036 CGGGGTTGGAGTATCCCCGATTGTGA-AAATTGGTGTTTTAAAAATAAAACCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTAAAAATAAAACCAGGGTTGGAGTAT
1007100 CCCT
66 CCCT
1007104 GATTGTGAAA
Statistics
Matches: 61, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
78 35 0.57
79 26 0.43
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (79 bp):
CGGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTAAAAATAAAACCAGGGTTGGAGTAT
CCCTTTGGAAATAA
Found at i:1007145 original size:129 final size:130
Alignment explanation
Indices: 1006828--1007154 Score: 334
Period size: 130 Copynumber: 2.5 Consensus size: 130
1006818 TGAAAATAAT
* * * * * ** * *
1006828 GGGGTTGGAGTATCTCCAATTATGAGAAATCAATATTTTAGGAATAAAACCGGGGTTGGAGTATC
1 GGGGTTGGAGTATCCCCGATTGTGAAAAATCAATATTTCAAAAATAAAACCAGAGTTGGAGTATC
** ** *
1006893 CCCTCAGAAATAACAGGGTTGGAGTATCGTCGATTGTGAAAAATCAATATTTTAGGAATAAAGCC
66 CCCTCAGAAATAACAGGGTTGGAGTATCCCCGATTGTGAAAAATCAATATTTTAAAAATAAAACC
* * ** *
1006958 GGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTAGGAATAAAACCAGGGTTGGAGTATC
1 GGGGTTGGAGTATCCCCGATTGTGAAAAATCAATATTTCAAAAATAAAACCAGAGTTGGAGTATC
* ** * *** *
1007023 CCTTTGGAAATAACGGGGTTGGAGTATCCCCGATTGTG-AAAATTGGTGTTTTAAAAATAAAACC
66 CCCTCAGAAATAACAGGGTTGGAGTATCCCCGATTGTGAAAAATCAATATTTTAAAAATAAAACC
* *** * *
1007087 GGGGTTGGAGTATCCCTGATTGTGAAAAATTGGTGTTTCAAAAATAAAATC-GAAGTTGGAGTAT
1 GGGGTTGGAGTATCCCCGATTGTGAAAAATCAATATTTCAAAAATAAAACCAG-AGTTGGAGTAT
1007151 CCCC
65 CCCC
1007155 GATTGTGGAA
Statistics
Matches: 167, Mismatches: 29, Indels: 3
0.84 0.15 0.02
Matches are distributed among these distances:
128 1 0.01
129 73 0.44
130 93 0.56
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.28
Consensus pattern (130 bp):
GGGGTTGGAGTATCCCCGATTGTGAAAAATCAATATTTCAAAAATAAAACCAGAGTTGGAGTATC
CCCTCAGAAATAACAGGGTTGGAGTATCCCCGATTGTGAAAAATCAATATTTTAAAAATAAAACC
Found at i:1007235 original size:103 final size:101
Alignment explanation
Indices: 1007040--1007227 Score: 259
Period size: 103 Copynumber: 1.8 Consensus size: 101
1007030 AAATAACGGG
* * * *
1007040 GTTGGAGTATCCCCGATTGTGAAAATTGGTGTTTTAAAAATAAAACCGGGGTTGGAGTATCCCTG
1 GTTGGAGTATCCCCGATTGTGAAAATTGGTGCTTTAAAAATAAAACCGGAGTTAGAGTATCCCCG
* *** *
1007105 ATTGTGAAAAATTGGTGTTTCAAAAATAAAATCGAA
66 ATTATGAAAAATCAATATTTCAAAAATAAAATCGAA
*
1007141 GTTGGAGTATCCCCGATTGTGGAAAATTGGTGCTTTAGAAAATAAAATCGGAGTTAGAGTATCCC
1 GTTGGAGTATCCCCGATTGT-GAAAATTGGTGCTTTA-AAAATAAAACCGGAGTTAGAGTATCCC
*
1007206 CGATTATGAGAAATCAATATTT
64 CGATTATGAAAAATCAATATTT
1007228 TGGAAATAGA
Statistics
Matches: 74, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
101 20 0.27
102 15 0.20
103 39 0.53
ACGTcount: A:0.34, C:0.12, G:0.23, T:0.31
Consensus pattern (101 bp):
GTTGGAGTATCCCCGATTGTGAAAATTGGTGCTTTAAAAATAAAACCGGAGTTAGAGTATCCCCG
ATTATGAAAAATCAATATTTCAAAAATAAAATCGAA
Found at i:1007248 original size:103 final size:98
Alignment explanation
Indices: 1007025--1007257 Score: 241
Period size: 103 Copynumber: 2.3 Consensus size: 98
1007015 GGAGTATCCC
* *
1007025 TTTGGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAATTGGTGTTTTAAAAATAAAACCGGG
1 TTTGGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAATTGGTGCTTTAAAAATAAAACCGGA
* * * *** *
1007090 GTTGGAGTATCCCTGATTGTGAAAAATTGGTGT
66 GTTAGAGTATCCCCGATTATGAAAAATCAATAT
*** **
1007123 TTCAAAAATAAAATCGAAGTTGGAGTATCCCCGATTGTGGAAAATTGGTGCTTTAGAAAATAAAA
1 TTTGGAAAT--AA-CGGGGTTGGAGTATCCCCGATTGT-GAAAATTGGTGCTTTA-AAAATAAAA
* *
1007188 TCGGAGTTAGAGTATCCCCGATTATGAGAAATCAATAT
61 CCGGAGTTAGAGTATCCCCGATTATGAAAAATCAATAT
*
1007226 TTTGGAAATAGAGCCGGGGTTGGAGTTTCCCC
1 TTTGGAAATA-A--CGGGGTTGGAGTATCCCC
1007258 TCGGAGGTAA
Statistics
Matches: 105, Mismatches: 23, Indels: 9
0.77 0.17 0.07
Matches are distributed among these distances:
98 6 0.06
100 2 0.02
101 23 0.22
102 16 0.15
103 58 0.55
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.30
Consensus pattern (98 bp):
TTTGGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAATTGGTGCTTTAAAAATAAAACCGGA
GTTAGAGTATCCCCGATTATGAAAAATCAATAT
Found at i:1007361 original size:53 final size:52
Alignment explanation
Indices: 1007300--1007423 Score: 151
Period size: 52 Copynumber: 2.4 Consensus size: 52
1007290 AAATAACGAG
* ** * * *
1007300 GTTGGAGTATCCTCGATT-GTGAAAAATTGGTGTTTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTAAAGAAAAATTAGTG--TTTTGAAAATAAAACCGGA
* *
1007353 GTTGGAGTATCCCCGATTAAAGGAAAATTAGTGTTTTGAAAATAAAACCGGG
1 GTTGGAGTATCCCCGATTAAAGAAAAATTAGTGTTTTGAAAATAAAACCGGA
1007405 GTTGGAGTATCCCCGATTA
1 GTTGGAGTATCCCCGATTA
1007424 TAAACAATTG
Statistics
Matches: 62, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
52 35 0.56
53 17 0.27
54 10 0.16
ACGTcount: A:0.31, C:0.11, G:0.26, T:0.31
Consensus pattern (52 bp):
GTTGGAGTATCCCCGATTAAAGAAAAATTAGTGTTTTGAAAATAAAACCGGA
Found at i:1007423 original size:52 final size:51
Alignment explanation
Indices: 1007036--1007422 Score: 269
Period size: 51 Copynumber: 7.4 Consensus size: 51
1007026 TTGGAAATAA
*
1007036 CGGGGTTGGAGTATCCCCGATTGT-GAAAATTGGTGTTTTAAAAATAAAAC
1 CGGGGTTGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTGAAAATAAAAC
* * ** *
1007086 CGGGGTTGGAGTATCCCTGATTGTGAAAAATTGGTGTTTCAAAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTGAAAATAAAAC
** * *
1007137 CGAAGTTGGAGTATCCCCGATTGTGGAAAATTGGTGCTTTAGAAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATTGTGGAAAATTGGTG-TTTTGAAAATAAAAC
* * * *** * * * *
1007189 CGGAGTTAGAGTATCCCCGATTAT-GAGAAATCAATATTTTGGAAATAGAGC
1 CGGGGTTGGAGTATCCCCGATTGTGGA-AAATTGGTGTTTTGAAAATAAAAC
* * * ** * * **** *
1007240 CGGGGTTGGAGTTTCCCC--TCGGAGGTAACGGGGTTGGAGTATCCCCAATGAAATAA
1 CGGGGTTGGAGTATCCCCGAT-TGTGG-AA---AATTGGTGTTTTGAAAAT-AAA-AC
* * * * *
1007296 CGAGGTTGGAGTATCCTCGATTGTGAAAAATTGGTGTTTTTTGGAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATTGTGGAAAATTGGTG--TTTTGAAAATAAAAC
* ** *
1007349 CGGAGTTGGAGTATCCCCGATTAAAGGAAAATTAGTGTTTTGAAAATAAAAC
1 CGGGGTTGGAGTATCCCCGATT-GTGGAAAATTGGTGTTTTGAAAATAAAAC
1007401 CGGGGTTGGAGTATCCCCGATT
1 CGGGGTTGGAGTATCCCCGATT
1007423 ATAAACAATT
Statistics
Matches: 253, Mismatches: 68, Indels: 30
0.72 0.19 0.09
Matches are distributed among these distances:
49 1 0.00
50 23 0.09
51 84 0.33
52 74 0.29
53 25 0.10
54 19 0.08
55 7 0.03
56 17 0.07
57 2 0.01
58 1 0.00
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.29
Consensus pattern (51 bp):
CGGGGTTGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTGAAAATAAAAC
Found at i:1009805 original size:13 final size:13
Alignment explanation
Indices: 1009787--1009812 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1009777 ACAAAGATCG
1009787 ATGTATCGATACA
1 ATGTATCGATACA
1009800 ATGTATCGATACA
1 ATGTATCGATACA
1009813 TTTCCTTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1009823 original size:21 final size:21
Alignment explanation
Indices: 1009799--1009840 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
1009789 GTATCGATAC
1009799 AATGTATCGATACATTTCCTT
1 AATGTATCGATACATTTCCTT
1009820 AATGTATCGATACATTTCCTT
1 AATGTATCGATACATTTCCTT
1009841 GGTAATAGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.19, G:0.10, T:0.43
Consensus pattern (21 bp):
AATGTATCGATACATTTCCTT
Found at i:1009898 original size:32 final size:32
Alignment explanation
Indices: 1009857--1009929 Score: 128
Period size: 32 Copynumber: 2.3 Consensus size: 32
1009847 AGCTTAGTAG
1009857 CGATACATTGTATCGATACAAAACTTATGCAT
1 CGATACATTGTATCGATACAAAACTTATGCAT
* *
1009889 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGCAT
1009921 CGATACATT
1 CGATACATT
1009930 TACGGTTTGT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 39 1.00
ACGTcount: A:0.36, C:0.19, G:0.12, T:0.33
Consensus pattern (32 bp):
CGATACATTGTATCGATACAAAACTTATGCAT
Found at i:1009921 original size:19 final size:19
Alignment explanation
Indices: 1009865--1009927 Score: 66
Period size: 19 Copynumber: 3.6 Consensus size: 19
1009855 AGCGATACAT
*
1009865 TGTATCGATACAAAACTTA
1 TGTATCGATACAACACTTA
*
1009884 TGCATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
1009897 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
1009916 TGTATCGATACA
1 TGTATCGATACA
1009928 TTTACGGTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 12
0.70 0.06 0.24
Matches are distributed among these distances:
13 8 0.23
14 1 0.03
16 5 0.14
18 1 0.03
19 20 0.57
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.32
Consensus pattern (19 bp):
TGTATCGATACAACACTTA
Found at i:1014709 original size:12 final size:13
Alignment explanation
Indices: 1014692--1014720 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
1014682 GTAAAAATCA
1014692 AAAATTAAAATT-
1 AAAATTAAAATTC
1014704 AAAATTAAAATTC
1 AAAATTAAAATTC
1014717 AAAA
1 AAAA
1014721 AAAATAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (13 bp):
AAAATTAAAATTC
Found at i:1014767 original size:35 final size:35
Alignment explanation
Indices: 1014727--1014997 Score: 497
Period size: 35 Copynumber: 7.7 Consensus size: 35
1014717 AAAAAAAATA
1014727 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
1 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
*
1014762 ATAAAAATGAAGGCATGGAATGATGAGCATGGAAT
1 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
1014797 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
1 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
1014832 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
1 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
* *
1014867 ATAAAAATGGAGGCAAGGAATGATGGGCATGGAAT
1 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
1014902 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
1 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
* *
1014937 ATAAAAATGGAGGCAAGGAATGATGGGCATGGAAT
1 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
1014972 ATAAAAATGAAGGCATGGAATGATGG
1 ATAAAAATGAAGGCATGGAATGATGG
1014998 CCATAAAAAA
Statistics
Matches: 226, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
35 226 1.00
ACGTcount: A:0.44, C:0.06, G:0.32, T:0.19
Consensus pattern (35 bp):
ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
Found at i:1016247 original size:27 final size:28
Alignment explanation
Indices: 1016213--1016285 Score: 105
Period size: 27 Copynumber: 2.6 Consensus size: 28
1016203 ATTTTTCACA
1016213 ATCGGGGATACTCCAACCCCGTTA-ATC
1 ATCGGGGATACTCCAACCCCGTTATATC
*
1016240 ATCGGGGATACTCCAACCCCGTTATTTTC
1 ATCGGGGATACTCCAACCCCGTTA-TATC
*
1016269 A-AGGGGATACTCCAACC
1 ATCGGGGATACTCCAACC
1016286 TCGGCTTTAT
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
27 24 0.57
28 15 0.36
29 3 0.07
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTATATC
Found at i:1016335 original size:79 final size:79
Alignment explanation
Indices: 1016240--1016655 Score: 611
Period size: 79 Copynumber: 5.3 Consensus size: 79
1016230 CCCGTTAATC
* * * *
1016240 ATCGGGGATACTCCAACCCCGTTATTTTCAAGGGGATACTCCAACCTCGGCTTTATTT-TGAAAA
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTTTTATTTCT-AAAA
1016304 CATCAATTTTTCATA
65 CATCAATTTTTCATA
* * ** *
1016319 ATCGAGGATACTCCAACCCTGTTATTTTTGAGGGGATACTCTAACCCCGGTTTTATTT-TGAAAA
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTTTTATTTCT-AAAA
1016383 CATCAATTTTTCATA
65 CATCAATTTTTCATA
* ** * *
1016398 ATCGGGGATACTCCAATCCCGCCATTTCCTAGGGGATACTCCAACCCCGATTTTATTTCTAAAAC
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAAC
1016463 ATCAATTTTTCATA
66 ATCAATTTTTCATA
* * *
1016477 ATCGGGGATACGCCAACCTCGTTATTTCCGAGGGGATACTTCAACCCCGGTTTTATTTCTAAAAC
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAAC
1016542 ATCAATTTTTCATA
66 ATCAATTTTTCATA
* * *
1016556 ATCGGGGATACTCCAACCCCGTTATTTCCGCGGGGATACTCCAACCTCAGTTTTATTTCTAAAAC
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAAC
1016621 ATCAATTTTTCATA
66 ATCAATTTTTCATA
*
1016635 ATCGGGGATACTCTAACCCCG
1 ATCGGGGATACTCCAACCCCG
1016656 ATTTTAATTT
Statistics
Matches: 304, Mismatches: 32, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
79 303 1.00
80 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.33
Consensus pattern (79 bp):
ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAAC
ATCAATTTTTCATA
Found at i:1016680 original size:51 final size:53
Alignment explanation
Indices: 1016586--1016707 Score: 153
Period size: 52 Copynumber: 2.4 Consensus size: 53
1016576 GTTATTTCCG
* *
1016586 CGGGGATACTCCAACCTC-AGTTTTATTTCTAAAACATCAATTTTT-CATAAT
1 CGGGGATACTCTAACCCCGAGTTTTATTTCTAAAACATCAATTTTTCCATAAT
* * *
1016637 CGGGGATACTCTAACCCCGA-TTTTAATTTTTAGAACA-CCATTTTTCCATAAT
1 CGGGGATACTCTAACCCCGAGTTTT-ATTTCTAAAACATCAATTTTTCCATAAT
*
1016689 CGGGGATACTCTAGCCCCG
1 CGGGGATACTCTAACCCCG
1016708 TTGTTATCTC
Statistics
Matches: 62, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
51 27 0.44
52 35 0.56
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.34
Consensus pattern (53 bp):
CGGGGATACTCTAACCCCGAGTTTTATTTCTAAAACATCAATTTTTCCATAAT
Found at i:1016732 original size:52 final size:51
Alignment explanation
Indices: 1016586--1016733 Score: 142
Period size: 52 Copynumber: 2.9 Consensus size: 51
1016576 GTTATTTCCG
* * *
1016586 CGGGGATACTCCAACCTC-AGTTTT-ATTTCTAAAACATCAATTTTTCATAAT
1 CGGGGATACTCTAACCCCGA-TTTTAATCTCTAAAACA-CAATTTTTCATAAT
* * * *
1016637 CGGGGATACTCTAACCCCGATTTTAATTTTTAGAACACCATTTTTCCATAAT
1 CGGGGATACTCTAACCCCGATTTTAATCTCTAAAACACAATTTTT-CATAAT
* *
1016689 CGGGGATACTCTAGCCCCG-TTGTT-ATCTCTAAAATACTAATTTTT
1 CGGGGATACTCTAACCCCGATT-TTAATCTCTAAAACAC-AATTTTT
1016734 TCTCATCGGG
Statistics
Matches: 81, Mismatches: 11, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
51 38 0.47
52 43 0.53
ACGTcount: A:0.28, C:0.22, G:0.12, T:0.37
Consensus pattern (51 bp):
CGGGGATACTCTAACCCCGATTTTAATCTCTAAAACACAATTTTTCATAAT
Found at i:1022969 original size:55 final size:55
Alignment explanation
Indices: 1022810--1023349 Score: 636
Period size: 55 Copynumber: 9.5 Consensus size: 55
1022800 CTCTTTTAGC
* *
1022810 CCTTCCAGTCCTCAAAGAGCAGGACGTCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACG------CCTTTCAAAGCCCACACAAGTTGGTGGCA
*
1022871 CCCTTT-AGTCCTCAAAGGGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCA
1 -CCTTTCAGTCCTCAAAGAGCAGGACG------CCTTTCAAAGCCCACACAAGTTGGTGGCA
* *
1022932 CCTTTCAGTCCTTAAAGAGCAGGACGCCTTTCAAAGCCCACACATGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
1022987 CCTTTTAGTCCTCAAAGAGCAGGACTCCTTTTAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * * * *
1023042 -CTTCCCAGTCCTCAAAAAGCAGGACGTCTTTCAAAGCCCACATAAGTCGGTGGCA
1 CCTT-TCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* *
1023097 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAACCCCACACTAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * * *
1023152 TCTTCCAATCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGACCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACG-C----C-TTTCAAAGCCCACACAAGTTGGTGGCA
*
1023213 CCTTTCAGTCTTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * * *
1023268 CCTTTCAATCCTCAAAGAGCAGGACTCCTTTTAAAGCCCACACAAGTTGGTGG-T
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* *
1023322 GCTTCCTAGTCCTCAAAGAGCAGGACGC
1 CCTTTC-AGTCCTCAAAGAGCAGGACGC
1023350 TCCCTCCTTT
Statistics
Matches: 421, Mismatches: 47, Indels: 27
0.85 0.09 0.05
Matches are distributed among these distances:
54 7 0.02
55 282 0.67
56 5 0.01
60 7 0.02
61 116 0.28
62 4 0.01
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (55 bp):
CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
Found at i:1023586 original size:55 final size:55
Alignment explanation
Indices: 1023394--1023964 Score: 605
Period size: 55 Copynumber: 10.0 Consensus size: 55
1023384 GACGCCTTCG
* * * * *
1023394 CCTTTCAAAG-CCACACGAGTTGGTGGCACTTTCCTAGTCTTCAAAGAGCAGGACG
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC-AGTCCTCAAAGAGCAGGACT
* *
1023449 CCTTTTAAAGCCCACACAAGTTGGTGCCACTTTTCTAGTCCTCAAAGAGCATGACGCCTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC-AGTCCTCAAAGAGCA-G--GAC-T
* * *
1023509 CGCCTTTCAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACA
1 C-CTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACT
* *
1023565 CCTTTTAAAGCCCACACAAGTTGGTGCCACTTTTCAGTCCTCAAAGAGTAGGATGCTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGA--C--T
* *
1023624 CTTTTTGCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACT
1 CCTTTT--AAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACT
* *
1023681 CCTTTTAAAGCCCACACAAGTTAGTGACACTTTTTCAGTCCTCAAAGAGCAGGACT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCAC-TTTTCAGTCCTCAAAGAGCAGGACT
* *
1023737 CC-TTTAAAGCCCACACAAGTTGGTGACACTTTTCAGTCCTCAAAGAGCAAGATGCTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGA--C--T
* * * *
1023795 CTTTTTGCAAA-TCC-CACTAGTTGGTGGCA-TCTTCTAGTCCTCAAAGAGCAGGATGCCTTT
1 CCTTTT--AAAGCCCACACAAGTTGGTGGCACTTTTC-AGTCCTCAAAGAGCAGGA---C--T
* * *
1023855 TCTTTTCAAAGACCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACT
1 CCTTTT-AAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACT
* *
1023911 CCTTTTAAAGCCCACACAAGTTGGTGGCGC-TTTCTAGTCCTCAAAAAGCAGGAC
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC-AGTCCTCAAAGAGCAGGAC
1023965 GCTCTCTCCT
Statistics
Matches: 445, Mismatches: 45, Indels: 52
0.82 0.08 0.10
Matches are distributed among these distances:
54 26 0.06
55 145 0.33
56 70 0.16
57 10 0.02
58 7 0.02
59 46 0.10
60 28 0.06
61 110 0.25
62 3 0.01
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (55 bp):
CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACT
Found at i:1023637 original size:116 final size:116
Alignment explanation
Indices: 1023367--1023977 Score: 703
Period size: 116 Copynumber: 5.3 Consensus size: 116
1023357 TTTCGCCCTT
* * * * * *
1023367 TAGTCCTCAAAGAGCAAGACGCCTTCGCCTTTCAAAG-CCACACGAGTTGGTGGCACTTTCCTAG
1 TAGTCCTCAAAGAGCAGGATGCTTTC-TCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTC-AG
* *
1023431 TCTTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGCCACTTTTC
64 TCCTCAAAGAGCAGGACTCCTTTTAAAGCCCACACAAGTTGGTGCCACTTTTC
* * * *
1023484 TAGTCCTCAAAGAGCATGACGCCTTCGCCTTTC-AAGCCCACACAAGTTGGTGGCACTTTTCAGT
1 TAGTCCTCAAAGAGCAGGATGCTTTC-TCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGT
*
1023548 CCTCAAAGAGCAGGACACCTTTTAAAGCCCACACAAGTTGGTGCCACTTTTC
65 CCTCAAAGAGCAGGACTCCTTTTAAAGCCCACACAAGTTGGTGCCACTTTTC
* * *
1023600 -AGTCCTCAAAGAGTAGGATGCTTTCTTTTTGCAAAGCCCACACAAGTTGGTGGCACCTTTCAGT
1 TAGTCCTCAAAGAGCAGGATGCTTTCTCTTT-CAAAGCCCACACAAGTTGGTGGCACTTTTCAGT
* *
1023664 CCTCAAAGAGCAGGACTCCTTTTAAAGCCCACACAAGTTAGTGACACTTTT-
65 CCTCAAAGAGCAGGACTCCTTTTAAAGCCCACACAAGTTGGTGCCACTTTTC
*
1023715 TCAGTCCTCAAAGAGCAGGA--C--TC-CTTT-AAAGCCCACACAAGTTGGTGACACTTTTCAGT
1 T-AGTCCTCAAAGAGCAGGATGCTTTCTCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGT
* * * * * *
1023774 CCTCAAAGAGCAAGATGCTTTCTTTTTGCAAA-TCC-CACTAGTTGGTGGCA-TCTTC
65 CCTCAAAGAGCAGGA--C--TCCTTTT--AAAGCCCACACAAGTTGGTGCCACTTTTC
* *
1023829 TAGTCCTCAAAGAGCAGGATGCCTTT-TCTTTTCAAAGACCACACAAGTTGGTGGCACCTTTCAG
1 TAGTCCTCAAAGAGCAGGATG-CTTTCTC-TTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAG
* *
1023893 TCCTCAAAGAGCAGGACTCCTTTTAAAGCCCACACAAGTTGGTGGCGC-TTTC
64 TCCTCAAAGAGCAGGACTCCTTTTAAAGCCCACACAAGTTGGTGCCACTTTTC
* * *
1023945 TAGTCCTCAAAAAGCAGGACGCTCTCTCCTTTC
1 TAGTCCTCAAAGAGCAGGATGCTTTCT-CTTTC
1023978 GCCCTTTAGT
Statistics
Matches: 431, Mismatches: 38, Indels: 51
0.83 0.07 0.10
Matches are distributed among these distances:
110 44 0.10
112 4 0.01
113 23 0.05
114 25 0.06
115 30 0.07
116 184 0.43
117 72 0.17
118 3 0.01
119 3 0.01
120 43 0.10
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (116 bp):
TAGTCCTCAAAGAGCAGGATGCTTTCTCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTC
CTCAAAGAGCAGGACTCCTTTTAAAGCCCACACAAGTTGGTGCCACTTTTC
Found at i:1023741 original size:28 final size:28
Alignment explanation
Indices: 1023657--1023741 Score: 75
Period size: 28 Copynumber: 3.0 Consensus size: 28
1023647 TGGTGGCACC
1023657 TTTCAGTCCTCAAAGAGCAGGACTCCTT
1 TTTCAGTCCTCAAAGAGCAGGACTCCTT
** * * ** *
1023685 TTAAAGCCCACACAAG-TTAGTGAC-ACTT
1 TTTCAGTCCTCA-AAGAGCAG-GACTCCTT
1023713 TTTCAGTCCTCAAAGAGCAGGACTCCTT
1 TTTCAGTCCTCAAAGAGCAGGACTCCTT
1023741 T
1 T
1023742 AAAGCCCACA
Statistics
Matches: 39, Mismatches: 14, Indels: 8
0.64 0.23 0.13
Matches are distributed among these distances:
27 6 0.15
28 27 0.69
29 6 0.15
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.28
Consensus pattern (28 bp):
TTTCAGTCCTCAAAGAGCAGGACTCCTT
Found at i:1024093 original size:156 final size:152
Alignment explanation
Indices: 1023829--1024119 Score: 383
Period size: 156 Copynumber: 1.9 Consensus size: 152
1023819 TGGCATCTTC
* *
1023829 TAGTCCTCAAAGAGCAGGATGCCTTTTCTTTTCAAAGACCACACAAGTTGGTGGCACCTTTCAGT
1 TAGTCCTCAAAGAGCAGGACGCC---TCTTTTCAAAGACCACACAAGTTGATGGCACCTTTCAGT
* *
1023894 CCTCAAAGAGCAGGACTCCTTTTAAAGCCCACACAAGTTGGTGGCGC-TTTCTAGTCCTCAAAAA
63 CCTCAAAGAGCAGGACTCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTC-AGTCCTCAAAAA
1023958 GCAGGACGCTCTCTCCTTTCGCCCTT
127 GCAGGACGCTCTCTCCTTTCGCCCTT
* *
1023984 TAGTCCTCAAAGAGCAGGACG-C-CTTTT-AAAGCCCACACAAGTTGATGGCACTTTTCTAGTCC
1 TAGTCCTCAAAGAGCAGGACGCCTCTTTTCAAAGACCACACAAGTTGATGGCACCTTTC-AGTCC
*
1024046 TCAAAGAGTAGGACGCCTTCGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAA
65 TCAAAGAGCAGGA---C-T--CCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAA
*
1024111 AGAGCAGGA
124 AAAGCAGGA
1024120 TGCTTTCTTT
Statistics
Matches: 120, Mismatches: 8, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
149 26 0.22
150 22 0.18
153 1 0.01
154 2 0.02
155 20 0.17
156 45 0.38
157 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (152 bp):
TAGTCCTCAAAGAGCAGGACGCCTCTTTTCAAAGACCACACAAGTTGATGGCACCTTTCAGTCCT
CAAAGAGCAGGACTCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAAAGCAG
GACGCTCTCTCCTTTCGCCCTT
Found at i:1024144 original size:61 final size:58
Alignment explanation
Indices: 1023984--1024241 Score: 314
Period size: 61 Copynumber: 4.4 Consensus size: 58
1023974 TTTCGCCCTT
*
1023984 TAGTCCTCAAAGAGCAGGACG--CCTTTTAAAGCCCACACAAGTTGATGGCACTTTTC
1 TAGTCCTCAAAGAGCAGGACGCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
* *
1024040 TAGTCCTCAAAGAGTAGGACGCCTTCGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTC
1 TAGTCCTCAAAGAGCAGGACG-C-T--CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
* * * *
1024102 -AGTCCTCAAAGAGCAGGATGCTTTCTTTTTGCAAATCCCACACTAGTTGGTGGCACTTTTC
1 TAGTCCTCAAAGAGCAGGACGC--TCCTTTT--AAAGCCCACACAAGTTGGTGGCACTTTTC
* *
1024163 -AATCCTCAAAGAGCAGGA--CTCCTTTTAAAGCCCACACAAGTTGGTGGCAC-TTCC
1 TAGTCCTCAAAGAGCAGGACGCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
1024217 TAGTCCTCAAAGAGCAGGACGCTCC
1 TAGTCCTCAAAGAGCAGGACGCTCC
1024242 CTCCTTTCGC
Statistics
Matches: 175, Mismatches: 15, Indels: 23
0.82 0.07 0.11
Matches are distributed among these distances:
54 3 0.02
55 39 0.22
56 20 0.11
57 10 0.06
59 5 0.03
60 1 0.01
61 64 0.37
62 33 0.19
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (58 bp):
TAGTCCTCAAAGAGCAGGACGCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
Found at i:1024206 original size:116 final size:114
Alignment explanation
Indices: 1023984--1024238 Score: 313
Period size: 116 Copynumber: 2.2 Consensus size: 114
1023974 TTTCGCCCTT
*
1023984 TAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGATGGCACTTTTCTAGTCCTCA
1 TAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGATGGCACTTTTCTAATCCTCA
* *
1024049 AAGAGTAGGACGCCTTCGCCTTTCAAAGCCCACACAAGTTGGTGGCACTT-T
66 AAGAGCAGGA--CCTTC-CCTTTCAAAGCCCACACAAGTTGGTGGCACTTCC
* * * *
1024100 TCAGTCCTCAAAGAGCAGGATGCTTTCTTTTTGCAAATCCCACACTAGTTGGTGGCACTTTTC-A
1 T-AGTCCTCAAAGAGCAGGACGC---C-TTTT--AAAGCCCACACAAGTTGATGGCACTTTTCTA
*
1024164 ATCCTCAAAGAGCAGGA-C-T-CCTTTTAAAGCCCACACAAGTTGGTGGCACTTCC
59 ATCCTCAAAGAGCAGGACCTTCCCTTTCAAAGCCCACACAAGTTGGTGGCACTTCC
1024217 TAGTCCTCAAAGAGCAGGACGC
1 TAGTCCTCAAAGAGCAGGACGC
1024239 TCCCTCCTTT
Statistics
Matches: 122, Mismatches: 9, Indels: 16
0.83 0.06 0.11
Matches are distributed among these distances:
116 52 0.43
117 21 0.17
118 1 0.01
119 1 0.01
120 1 0.01
121 4 0.03
122 16 0.13
123 26 0.21
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (114 bp):
TAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGATGGCACTTTTCTAATCCTCA
AAGAGCAGGACCTTCCCTTTCAAAGCCCACACAAGTTGGTGGCACTTCC
Found at i:1024299 original size:272 final size:271
Alignment explanation
Indices: 1023719--1024506 Score: 1075
Period size: 272 Copynumber: 2.9 Consensus size: 271
1023709 ACTTTTTCAG
* *
1023719 TCCTCAAAGAGCAGGACTCC-TTTAAAGCCCACACAAGTTGGTGACACTTTTC-AGTCCTCAAAG
1 TCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAG
* * * ** * * *
1023782 AGCAAGATGCTTTC-TTTTTGCAAA-TCC-CACTAGTTGGTGGCA-TCTTCTAGTCCTCAAAGAG
66 AGCAGGACGCCTTCGCCTTT-CAAAGCCCACACAAGTTGGTGGCACTTTTC-AGTCCTCAAAGAG
* *
1023843 CAGGATGCCTTT-TCTTTTCAAAGACCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAG
129 CAGGATG-CTTTCT-TTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAG
* * *
1023907 GACTCCTTTTAAAGCCCACACAAGTTGGTGGCGCTTTCTAGTCCTCAAAAAGCAGGACGCTCTCT
192 GACTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCTAGTCCTCAAAGAGCAGGACGCTCCCT
*
1023972 CCTTTCGCCCTTTAG
257 CCTTTCGCCCTTTAA
*
1023987 TCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGATGGCACTTTTCTAGTCCTCAAAG
1 TCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAG
*
1024052 AGTAGGACGCCTTCGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCA
66 AGCAGGACGCCTTCGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCA
* * *
1024117 GGATGCTTTCTTTTTGCAAATCCCACACTAGTTGGTGGCACTTTTCAATCCTCAAAGAGCAGGAC
131 GGATGCTTTCTTTTT-CAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGAC
*
1024182 TCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACGCTCCCTCCT
195 TCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCTAGTCCTCAAAGAGCAGGACGCTCCCTCCT
1024247 TTCGCCCTTTAA
260 TTCGCCCTTTAA
* *
1024259 TCCTCAAAGAGTAGGACGCCTTTTAAAGCCCACACAAGTTGGGGGCACTTTTCTAGTCCTCAAAG
1 TCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAG
* *
1024324 AGCAGGACGCCTTCGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCTTCAAAGAGCA
66 AGCAGGACGCCTTCGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCA
* *
1024389 GGA--C--GC-TTTTCAAAGCCCACACAAGTTGGTGGCA-TCTTTCAGTCTTCAAAGAGCAGGAT
131 GGATGCTTTCTTTTTCAAAGCCCACACAAGTTGGTGGCACT-TTTCAGTCCTCAAAGAGCAGGA-
* * * *
1024448 GCTTTCTTTTTGCAAATCCCACACTAGTTGGTGGCACTTTTTAGTCCT--AAGAGCAGGAC
194 -C--TCCTTTT--AAAGCCCACACAAGTTGGTGGCACTTTCTAGTCCTCAAAGAGCAGGAC
1024507 TCCTTTTAAA
Statistics
Matches: 467, Mismatches: 38, Indels: 28
0.88 0.07 0.05
Matches are distributed among these distances:
265 1 0.00
266 42 0.09
267 4 0.01
268 21 0.04
269 30 0.06
270 43 0.09
271 13 0.03
272 309 0.66
273 4 0.01
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.27
Consensus pattern (271 bp):
TCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAG
AGCAGGACGCCTTCGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCA
GGATGCTTTCTTTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACT
CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCTAGTCCTCAAAGAGCAGGACGCTCCCTCCTT
TCGCCCTTTAA
Found at i:1024319 original size:211 final size:210
Alignment explanation
Indices: 1024065--1024446 Score: 581
Period size: 211 Copynumber: 1.8 Consensus size: 210
1024055 AGGACGCCTT
* * * **
1024065 CGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATGCTTTC-TT
1 CGCCTTTCAAAGCCCACACAAGTTGGGGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCTTCGCC
* * *
1024129 TTTGCAAATCCCACACTAGTTGGTGGCACTTTTCAATCCTCAAAGAGCAGGACTCCTTTT-AAAG
66 TTT-CAAAGCCCACACAAGTTGGTGGCACCTTTCAATCCTCAAAGAGCAGGAC-CCTTTTCAAAG
1024193 CCCACACAAGTTGGTGGCA-CTTCCTAGTCCTCAAAGAGCAGGACGCTCCCTCCTTTCGCCCTTT
129 CCCACACAAGTTGGTGGCATCTTCC-AGTCCTCAAAGAGCAGGACGCTCCCTCCTTTCGCCCTTT
1024257 AATCCTCAAAGAGTAGGA
193 AATCCTCAAAGAGTAGGA
*
1024275 CGCCTTTTAAAGCCCACACAAGTTGGGGGCACTTTTCTAGTCCTCAAAGAGCAGGACGCCTTCGC
1 CGCCTTTCAAAGCCCACACAAGTTGGGGGCACTTTTC-AGTCCTCAAAGAGCAGGACGCCTTCGC
* * *
1024340 CTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCTTCAAAGAGCAGGACGCTTTTCAAAGC
65 CTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAATCCTCAAAGAGCAGGACCCTTTTCAAAGC
* *
1024405 CCACACAAGTTGGTGGCATCTTTCAGTCTTCAAAGAGCAGGA
130 CCACACAAGTTGGTGGCATCTTCCAGTCCTCAAAGAGCAGGA
1024447 TGCTTTCTTT
Statistics
Matches: 154, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
210 40 0.26
211 107 0.69
212 7 0.05
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (210 bp):
CGCCTTTCAAAGCCCACACAAGTTGGGGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCTTCGCC
TTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAATCCTCAAAGAGCAGGACCCTTTTCAAAGCC
CACACAAGTTGGTGGCATCTTCCAGTCCTCAAAGAGCAGGACGCTCCCTCCTTTCGCCCTTTAAT
CCTCAAAGAGTAGGA
Found at i:1024428 original size:55 final size:54
Alignment explanation
Indices: 1024262--1024561 Score: 286
Period size: 55 Copynumber: 5.3 Consensus size: 54
1024252 CCTTTAATCC
* * *
1024262 TCAAAGAGTAGGACGCCTTTT-AAAGCCCACACAAGTTGGGGGCACTTTTCTAGTCC
1 TCAAAGAGCAGGACG-CTTTTCAAAGCCCACACAAGTTGGTGGCAC-TTTC-AGTCT
1024318 TCAAAGAGCAGGACGCCTTCGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCT
1 TCAAAGAGCAGGACG-C-T----TTTCAAAGCCCACACAAGTTGGTGGCA-CTTTCAGTCT
1024379 TCAAAGAGCAGGACGCTTTTCAAAGCCCACACAAGTTGGTGGCATCTTTCAGTCT
1 TCAAAGAGCAGGACGCTTTTCAAAGCCCACACAAGTTGGTGGCA-CTTTCAGTCT
* * * *
1024434 TCAAAGAGCAGGATGCTTTCTTTTTGCAAATCCCACACTAGTTGGTGGCACTTTTTAGTC-
1 TCAAAGAGCAGGA--C--GC-TTTT-CAAAGCCCACACAAGTTGGTGGCAC-TTTCAGTCT
* * *
1024494 -CTAAGAGCAGGACTCCTTTT-AAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCT
1 TCAAAGAGCAGGAC-GCTTTTCAAAGCCCACACAAGTTGGTGGCACTTTC-AGT-CT
1024549 T-AAAGAGCAGGAC
1 TCAAAGAGCAGGAC
1024562 ACTCCCTCCT
Statistics
Matches: 211, Mismatches: 15, Indels: 37
0.80 0.06 0.14
Matches are distributed among these distances:
52 2 0.01
53 25 0.12
54 1 0.00
55 65 0.31
56 18 0.09
57 3 0.01
59 13 0.06
60 6 0.03
61 51 0.24
62 26 0.12
63 1 0.00
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (54 bp):
TCAAAGAGCAGGACGCTTTTCAAAGCCCACACAAGTTGGTGGCACTTTCAGTCT
Found at i:1024534 original size:114 final size:114
Alignment explanation
Indices: 1024261--1024561 Score: 376
Period size: 116 Copynumber: 2.6 Consensus size: 114
1024251 CCCTTTAATC
* * *
1024261 CTCAAAGAGTAGGACGCCTTTTAAAGCCCACACAAGTTGGGGGCACTTTTCTAGTCCTCAAAGAG
1 CTCAAAGAGCAGGAC-CCTTTTAAAGCCCACACAAGTTGGTGGCAC-TTTCTAGTCTTCAAAGAG
1024326 CAGGACGCCTTCGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGT
64 CAGGACGCCTTCGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGT
*
1024377 CTTCAAAGAGCAGGACGCTTTTCAAAGCCCACACAAGTTGGTGGCATCTTTC-AGTCTTCAAAGA
1 C-TCAAAGAGCAGGACCCTTTT-AAAGCCCACACAAGTTGGTGGCA-CTTTCTAGTCTTCAAAGA
* * ** * * * *
1024441 GCAGGATGCTTTC-TTTTTGCAAATCCCACACTAGTTGGTGGCACTTTTTAGT
63 GCAGGACGCCTTCGCCTTT-CAAAGCCCACACAAGTTGGTGGCACCTTTCAGT
* *
1024493 C-CTAAGAGCAGGACTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTT-AAAGAG
1 CTCAAAGAGCAGGAC-CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCTAGT-CTTCAAAGAG
1024556 CAGGAC
64 CAGGAC
1024562 ACTCCCTCCT
Statistics
Matches: 162, Mismatches: 16, Indels: 16
0.84 0.08 0.08
Matches are distributed among these distances:
113 4 0.02
114 49 0.30
115 11 0.07
116 58 0.36
117 39 0.24
118 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (114 bp):
CTCAAAGAGCAGGACCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCTAGTCTTCAAAGAGCA
GGACGCCTTCGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGT
Found at i:1024770 original size:60 final size:58
Alignment explanation
Indices: 1024582--1024776 Score: 222
Period size: 61 Copynumber: 3.3 Consensus size: 58
1024572 TTCGCCCTTT
1024582 AGTCCTCAAAGAGCAGGACGC---CTTTT-AAAGCCTACACAAGTTGGTGGCACTTTTC
1 AGTCCTCAAAGAGCAGGACGCTTTCTTTTCAAAGCC-ACACAAGTTGGTGGCACTTTTC
* * * * *
1024637 AATCCTCAAAGAGCAGGATGCTTTCTTTTTGCAAATCCCACACTAGTTGGTGGCA-TCTTCC
1 AGTCCTCAAAGAGCAGGACGCTTTC-TTTT-CAAA-GCCACACAAGTTGGTGGCACT-TTTC
1024698 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGACCACACAAG-TGGTGGCACTTTTC
1 AGTCCTCAAAGAGCAGGACG-C-TTTCTTTTCAAAG-CCACACAAGTTGGTGGCACTTTTC
*
1024758 AGTCCTCAAAGAGTAGGAC
1 AGTCCTCAAAGAGCAGGAC
1024777 ACACTTCTTT
Statistics
Matches: 117, Mismatches: 11, Indels: 19
0.80 0.07 0.13
Matches are distributed among these distances:
55 19 0.16
58 1 0.01
59 4 0.03
60 30 0.26
61 52 0.44
62 7 0.06
63 4 0.03
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.27
Consensus pattern (58 bp):
AGTCCTCAAAGAGCAGGACGCTTTCTTTTCAAAGCCACACAAGTTGGTGGCACTTTTC
Found at i:1024821 original size:45 final size:45
Alignment explanation
Indices: 1024759--1024865 Score: 169
Period size: 45 Copynumber: 2.4 Consensus size: 45
1024749 GCACTTTTCA
*
1024759 GTCCTCAAAGAGTAGGACACACTTCTTTCCCTTCTTTTCTCTTTT
1 GTCCTCAAAGAGCAGGACACACTTCTTTCCCTTCTTTTCTCTTTT
* * *
1024804 GTCCTCAAAAAGCAGGACACACTTGTTTCCCTTTTTTTCTCTTTT
1 GTCCTCAAAGAGCAGGACACACTTCTTTCCCTTCTTTTCTCTTTT
*
1024849 ATCCTCAAAGAGCAGGA
1 GTCCTCAAAGAGCAGGA
1024866 TGCACTTTAT
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 56 1.00
ACGTcount: A:0.22, C:0.27, G:0.13, T:0.37
Consensus pattern (45 bp):
GTCCTCAAAGAGCAGGACACACTTCTTTCCCTTCTTTTCTCTTTT
Found at i:1025041 original size:43 final size:43
Alignment explanation
Indices: 1024955--1025043 Score: 110
Period size: 42 Copynumber: 2.1 Consensus size: 43
1024945 AGACGTACTC
* *
1024955 TTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCTTTTTCTT
1 TTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCATTCTCTT
* *
1024998 TTTTTC-CTTTGTCCTTAAGGAGCAGGAC-CTATTTCATTCTCTT
1 TTTTTCACTTTGTCCTCAAGAAGCAGGACAC--TTTCATTCTCTT
1025041 TTT
1 TTT
1025044 CTTTGTCCAA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
41 1 0.03
42 20 0.50
43 19 0.47
ACGTcount: A:0.17, C:0.22, G:0.12, T:0.48
Consensus pattern (43 bp):
TTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCATTCTCTT
Done.