Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2750
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 130699
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.33
File 2 of 2
Found at i:123548 original size:20 final size:20
Alignment explanation
Indices: 123451--123578 Score: 61
Period size: 19 Copynumber: 6.5 Consensus size: 20
123441 CTTCTCTCCT
* * *
123451 TCTCCCCCCACCTTCCCCCC
1 TCTCCCTCCTCCTCCCCCCC
*
123471 TCTCCC-CCTCCTCCCCGCC
1 TCTCCCTCCTCCTCCCCCCC
**
123490 TC-CGGTCC-CC-CCGCCCCC
1 TCTCCCTCCTCCTCC-CCCCC
*
123508 TCTCCCTCTTCCCTCGCCCCCCCC
1 TCTCCCTCCT-CCT---CCCCCCC
*
123532 TCTCCCTCCTCCTCCCCACC
1 TCTCCCTCCTCCTCCCCCCC
* * * *
123552 ACCCCCCCCTCAT-CCCCCC
1 TCTCCCTCCTCCTCCCCCCC
123571 TC-CCCTCC
1 TCTCCCTCC
123579 AACCCTCCCC
Statistics
Matches: 81, Mismatches: 18, Indels: 20
0.68 0.15 0.17
Matches are distributed among these distances:
17 2 0.02
18 14 0.17
19 23 0.28
20 21 0.26
21 2 0.02
23 3 0.04
24 14 0.17
25 2 0.02
ACGTcount: A:0.03, C:0.73, G:0.04, T:0.20
Consensus pattern (20 bp):
TCTCCCTCCTCCTCCCCCCC
Found at i:123572 original size:27 final size:26
Alignment explanation
Indices: 123524--123602 Score: 81
Period size: 27 Copynumber: 3.0 Consensus size: 26
123514 TCTTCCCTCG
123524 CCCCCCCCTCTCCCTCCTCCTCCCCACCA
1 CCCCCCCCTCT-CC-CC-CCTCCCCACCA
*
123553 CCCCCCCCTCATCCCCCCTCCCCTCCA
1 CCCCCCCCTC-TCCCCCCTCCCCACCA
* *
123580 ACCCTCCC-CTCCCCCC-CCCCACC
1 CCCCCCCCTCTCCCCCCTCCCCACC
123603 CCTCCTCCCC
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
24 6 0.13
25 7 0.16
26 1 0.02
27 16 0.36
28 2 0.04
29 12 0.27
30 1 0.02
ACGTcount: A:0.08, C:0.78, G:0.00, T:0.14
Consensus pattern (26 bp):
CCCCCCCCTCTCCCCCCTCCCCACCA
Found at i:123652 original size:9 final size:8
Alignment explanation
Indices: 123638--124530 Score: 230
Period size: 8 Copynumber: 107.0 Consensus size: 8
123628 AACCTACCCT
123638 CCCCCTACC
1 CCCCCT-CC
123647 CCCCCT-C
1 CCCCCTCC
123654 CCCCCTCC
1 CCCCCTCC
123662 CTCCTCCTCC
1 C-CC-CCTCC
123672 CCTCCC-CC
1 CC-CCCTCC
*
123680 CCCCGTCC
1 CCCCCTCC
*
123688 CACCCT-C
1 CCCCCTCC
**
123695 CCTTCTCC
1 CCCCCTCC
123703 CCCCC-CTC
1 CCCCCTC-C
*
123711 CCCCATCAC
1 CCCCCTC-C
*
123720 CCGCCTTCC
1 CC-CCCTCC
*
123729 CTACTCCTCCC
1 C--CCCCT-CC
123740 CCCCCATCGC
1 CCCCC-TC-C
*
123750 TCCCCTCC
1 CCCCCTCC
123758 CCCATGCAGCTCC
1 CCC---C--CTCC
* *
123771 TCCCGTCC
1 CCCCCTCC
123779 CCACCGCT-C
1 CC-CC-CTCC
123788 CC-CCTCC
1 CCCCCTCC
123795 CTCCCCTCCC
1 C-CCCCT-CC
123805 CTCCCCTCCC
1 C-CCCCT-CC
*
123815 CCCCCTCT
1 CCCCCTCC
** * *
123823 TTCTCTCT
1 CCCCCTCC
123831 CCCCCTCC
1 CCCCCTCC
123839 TCCCCC-CC
1 -CCCCCTCC
123847 CCTCTCC-CC
1 CC-C-CCTCC
123856 CCCCCTCC
1 CCCCCTCC
123864 CCCCC-CC
1 CCCCCTCC
123871 CCCCGC-CC
1 CCCC-CTCC
*
123879 CCTCCCCCC
1 CC-CCCTCC
123888 CCCCCTCTC
1 CCCCCTC-C
* *
123897 CCCTCACC
1 CCCCCTCC
123905 CCCCCT-C
1 CCCCCTCC
*
123912 CACCCTCC
1 CCCCCTCC
123920 CCCCCTCC
1 CCCCCTCC
123928 CCTACCCTCC
1 CC--CCCTCC
123938 CCCCC-CGC
1 CCCCCTC-C
123946 CCCCCT-C
1 CCCCCTCC
*
123953 CCCCATCC
1 CCCCCTCC
123961 CCTCCCTCC
1 CC-CCCTCC
123970 TCCCCTCTCC
1 -CCCC-CTCC
123980 TCCCCCTCCC
1 -CCCCCT-CC
123990 CCCCCTCC
1 CCCCCTCC
*
123998 TCCCCTCC
1 CCCCCTCC
*
124006 CCCCC-CA
1 CCCCCTCC
124013 CCCCCTCC
1 CCCCCTCC
124021 CCCCC-CAC
1 CCCCCTC-C
*
124029 CCTTCCTCC
1 CC-CCCTCC
*
124038 CTCCCT-C
1 CCCCCTCC
124045 CCCCCTCC
1 CCCCCTCC
124053 CGCTCCCTCC
1 C-C-CCCTCC
124063 CCCTCCTCC
1 CCC-CCTCC
124072 TCCCTCCTCC
1 -CCC-CCTCC
*
124082 ATCCCTCTCC
1 --CCCCCTCC
*
124092 CTCCCT-C
1 CCCCCTCC
124099 CCCCCTCC
1 CCCCCTCC
* *
124107 GCCCCACC
1 CCCCCTCC
*
124115 CCCCC-CA
1 CCCCCTCC
*
124122 CCGCC-CC
1 CCCCCTCC
124129 CCCCC-CC
1 CCCCCTCC
*
124136 CCCCCACAC
1 CCCCCTC-C
124145 CCCCCTCC
1 CCCCCTCC
124153 ACAACCCC-CC
1 -C--CCCCTCC
124163 CCTCCCTCC
1 CC-CCCTCC
124172 CCCCCTCTC
1 CCCCCTC-C
124181 ATCCCCC-CC
1 --CCCCCTCC
124190 CCCCC-CC
1 CCCCCTCC
*
124197 CCCTCATCC
1 CCC-CCTCC
*
124206 CCAACCTCC
1 CC-CCCTCC
124215 CCCCC-CC
1 CCCCCTCC
124222 CCCCC-CC
1 CCCCCTCC
124229 CCTCCC-CC
1 CC-CCCTCC
* **
124237 CCCCATAA
1 CCCCCTCC
* ***
124245 CCACCGAA
1 CCCCCTCC
124253 CCCCC-CC
1 CCCCCTCC
*
124260 CCCCC-AC
1 CCCCCTCC
124267 CCCCCTCC
1 CCCCCTCC
124275 CCCCCTCC
1 CCCCCTCC
*
124283 CTCTCC-CC
1 C-CCCCTCC
*
124291 CCCCTTCC
1 CCCCCTCC
*
124299 CCTTCACTCC
1 CC--CCCTCC
*
124309 CACAGTACCTCC
1 C-C---CCCTCC
*
124321 TCCCCCTGAC
1 -CCCCCT-CC
*
124331 CGCCCTCC
1 CCCCCTCC
*
124339 TCCTCC-CC
1 -CCCCCTCC
*
124347 CCCCCT-T
1 CCCCCTCC
*
124354 CCCCCTAC
1 CCCCCTCC
* *
124362 ACCCC-AC
1 CCCCCTCC
*
124369 CCACCTCAC
1 CCCCCTC-C
**
124378 CCTTCTCC
1 CCCCCTCC
124386 CCCCCTCCC
1 CCCCCT-CC
124395 CCTCCCTCTC
1 CC-CCCTC-C
124405 CCCCCTCC
1 CCCCCTCC
124413 CCCCC-CC
1 CCCCCTCC
*
124420 CAACCCCACC
1 C--CCCCTCC
* *
124430 TCACCC-CA
1 -CCCCCTCC
*
124438 CCCTCTCC
1 CCCCCTCC
124446 CCCCCT--
1 CCCCCTCC
124452 CCCCCTCC
1 CCCCCTCC
124460 CCCCC-CC
1 CCCCCTCC
*
124467 CCCTCTCC
1 CCCCCTCC
124475 TTCTCCCCTCC
1 --C-CCCCTCC
124486 CCCCC-CC
1 CCCCCTCC
124493 TCCCCCT--
1 -CCCCCTCC
124500 -CCCCTCC
1 CCCCCTCC
* *
124507 CCCACACC
1 CCCCCTCC
*
124515 CCCCCCCC
1 CCCCCTCC
124523 CCCCCTCC
1 CCCCCTCC
124531 TCTCACCAGA
Statistics
Matches: 672, Mismatches: 110, Indels: 205
0.68 0.11 0.21
Matches are distributed among these distances:
5 5 0.01
6 8 0.01
7 142 0.21
8 235 0.35
9 148 0.22
10 95 0.14
11 26 0.04
12 6 0.01
13 7 0.01
ACGTcount: A:0.06, C:0.77, G:0.02, T:0.16
Consensus pattern (8 bp):
CCCCCTCC
Found at i:123663 original size:26 final size:26
Alignment explanation
Indices: 123634--123712 Score: 69
Period size: 25 Copynumber: 3.1 Consensus size: 26
123624 CCTGAACCTA
123634 CCCTCCCCCTACCCC-CCCTCCCCCC-T
1 CCCTCCCCCT-CCCCTCCC-CCCCCCGT
*
123660 CCCTCCTCCTCCCCTCCCCCCCCCGT
1 CCCTCCCCCTCCCCTCCCCCCCCCGT
* *
123686 -CC-CACCCTCCCTTCTCCCCCCCC-T
1 CCCTCCCCCTCCCCTC-CCCCCCCCGT
123710 CCC
1 CCC
123713 CCATCACCCG
Statistics
Matches: 45, Mismatches: 4, Indels: 9
0.78 0.07 0.16
Matches are distributed among these distances:
24 10 0.22
25 22 0.49
26 13 0.29
ACGTcount: A:0.03, C:0.78, G:0.01, T:0.18
Consensus pattern (26 bp):
CCCTCCCCCTCCCCTCCCCCCCCCGT
Found at i:123715 original size:26 final size:24
Alignment explanation
Indices: 123634--124239 Score: 171
Period size: 26 Copynumber: 24.1 Consensus size: 24
123624 CCTGAACCTA
123634 CCCTCCCCCTACCC-CCCCT--CCC
1 CCCTCCCCC-ACCCTCCCCTCCCCC
*
123656 CCCTCCCTCC-TCCTCCCCTCCCCC
1 CCCTCCC-CCACCCTCCCCTCCCCC
*
123680 CCC-CGTCCCACCCTCCCTTCTCCCCC
1 CCCTC-CCCCACCCTCCC--CTCCCCC
* *
123706 CCCTCCCCCATCACC-CGCCTTCCCTAC
1 CCCTCCCCCA-C-CCTC-CCCTCCC-CC
* *
123733 TCCTCCCCC-CCCAT-CGCTCCCCTC
1 CCCTCCCCCACCC-TCCCCTCCCC-C
*** *
123757 CCC-CATGCAGCTCCTCCCGTCCCCAC
1 CCCTCCCCCA-C-CCTCCCCTCCCC-C
* *
123783 CGCTCCCCCTCCCTCCCCTCCCCTC
1 CCCTCCCCCACCCTCCCCTCCCC-C
** *
123808 CCCTCCCCC-CCCTCTTTCTCTCTCC
1 CCCTCCCCCACCCTC-CCCTC-CCCC
123833 CCCTCCTCCC-CCC-CCCTCTCCCCCC
1 CCCTCC-CCCACCCTCCC-CT-CCCCC
* *
123858 CCCTCCCCC-CCCCCCCCGCCCCC
1 CCCTCCCCCACCCTCCCCTCCCCC
*
123881 TCCC-CCCCCCCCTCTCCCCTCACCCC
1 -CCCTCCCCCACC-CTCCCCTC-CCCC
* *
123907 CCCTCCACCCTCCC-CCCCTCCCCTA
1 CCCTCC-CCCACCCTCCCCTCCCC-C
*
123932 CCCTCCCCC-CCCGCCCC-CCTCCC
1 CCCTCCCCCACCCTCCCCTCC-CCC
* *
123955 CCATCCCCTCCCTCCTCCCCTCTCCTCC
1 CCCTCCCC-CAC-CCTCCCCTC-CC-CC
*
123983 CCCTCCCCCCCCTCCTCCCCTCCCCC
1 CCCT-CCCCCAC-CCTCCCCTCCCCC
* * * *
124009 CCCACCCCCTCCCCCCCCACCCTTCC
1 CCCTCCCCCACCCTCCCCTCCC--CC
*
124035 TCCCTCCCTCCCCCCTCCCGCTCCCTCC
1 -CCCTCCC-CCACCCTCCC-CTCCC-CC
* * *
124063 CCCTCCTCCTCCCTCCTCCATCCCTCT
1 CCCTCCCCCACCCTCC-CC-TCCC-CC
*
124090 CCCTCCCTCCCCCCTCCGCC-CCACCC
1 CCCTCCC-CCACCCTCC-CCTCC-CCC
* * *
124116 CCC-CCACCGCCC-CCCCCCCCCC
1 CCCTCCCCCACCCTCCCCTCCCCC
* * **
124138 CCCACACCC-CCCTCCACAACCCCC
1 CCCTCCCCCACCCTCC-CCTCCCCC
* * *
124162 CCCTCCCTCCCCCCCTCTCATCCCCC
1 CCCT-CC-CCCACCCTCCCCTCCCCC
* * *
124188 CCCCCCCCCCCCTCATCCCCAACCTCCC
1 CCCTCCCCCACC-C-TCCCC-TCC-CCC
124216 CCC-CCCCC-CCC-CCCCTCCCCC
1 CCCTCCCCCACCCTCCCCTCCCCC
124237 CCC
1 CCC
124240 CATAACCACC
Statistics
Matches: 451, Mismatches: 70, Indels: 127
0.70 0.11 0.20
Matches are distributed among these distances:
21 8 0.02
22 25 0.06
23 42 0.09
24 82 0.18
25 83 0.18
26 92 0.20
27 61 0.14
28 50 0.11
29 8 0.02
ACGTcount: A:0.04, C:0.78, G:0.02, T:0.16
Consensus pattern (24 bp):
CCCTCCCCCACCCTCCCCTCCCCC
Found at i:123798 original size:4 final size:5
Alignment explanation
Indices: 123769--124101 Score: 139
Period size: 5 Copynumber: 65.4 Consensus size: 5
123759 CCATGCAGCT
* * *
123769 CCTCC CGTCC CCACC GCTCC CC-CTC CCTCC CCTCC CCTCC CCTCC CC-CC
1 CCTCC CCTCC CCTCC CCTCC CCTC-C CCTCC CCTCC CCTCC CCTCC CCTCC
** * *
123818 CCT-C TTTCTC TCTCCC CCTCC TCC-CC CC-CC CTCTCC CCCCC CCTCC
1 CCTCC CCTC-C CCT-CC CCTCC -CCTCC CCTCC C-CTCC CCTCC CCTCC
* *
123864 CC-CC CCCCC CCGCCC CCTCC CC-CC CC-CC CTCTCC CCTCAC CC-CC
1 CCTCC CCTCC CC-TCC CCTCC CCTCC CCTCC C-CTCC CCTC-C CCTCC
* * *
123908 CCTCC ACC-CTC CC-CC CCTCC CCTAC CCTCC CCCCC CGCCCC CCTCCC
1 CCTCC -CCTC-C CCTCC CCTCC CCTCC CCTCC CCTCC C-CTCC CCT-CC
*
123955 CCATCC CCTCCC TCCTCC CCTCT CCTCCC CCTCC CC-CC CCT-- CCTCC
1 CC-TCC CCT-CC -CCTCC CCTCC CCT-CC CCTCC CCTCC CCTCC CCTCC
* * * *
124001 CCTCC CC-CC CCACCC CCTCC CC-CC CCACC CTTCCTC CCTCC CTCCCC
1 CCTCC CCTCC CC-TCC CCTCC CCTCC CCTCC CCT-C-C CCTCC C-CTCC
124048 CCTCC CGCT-C CCTCCC CCTCC TCCT-C CCTCC TCCAT-C CCTCTC CCT-C
1 CCTCC C-CTCC CCT-CC CCTCC -CCTCC CCTCC -CC-TCC CCTC-C CCTCC
124095 CCTCC CC
1 CCTCC CC
124102 CCTCCGCCCC
Statistics
Matches: 260, Mismatches: 25, Indels: 86
0.70 0.07 0.23
Matches are distributed among these distances:
3 3 0.01
4 51 0.20
5 124 0.48
6 73 0.28
7 9 0.03
ACGTcount: A:0.02, C:0.78, G:0.02, T:0.18
Consensus pattern (5 bp):
CCTCC
Found at i:124134 original size:86 final size:80
Alignment explanation
Indices: 123787--124527 Score: 271
Period size: 81 Copynumber: 9.1 Consensus size: 80
123777 CCCCACCGCT
* * * * *
123787 CCCCCTCCCTCCCCTCCCCTCCCCTCCC-CCCCCTCTTTCTCTCTCCCCCTCCTCCCCCCCCCTC
1 CCCCCACCCCCCCCCCCCCTCCCCTCCCTCCCCCTC---CTC-CTCCCCCTCCTCCCTCTCCCTC
123851 TCCCCCCCCCTCCCCCCCCC
62 -CCCCCCCCCTCCCCCCCCC
* * *
123871 CCCCGC-CCCCTCCCCCCCCC-CCTCTCCCCTCACCC-CC-CCTCCACCCTCC-CCCCCTCCCCT
1 CCCC-CACCCC-CCCCCCCCCTCCCCT-CCCTCCCCCTCCTCCTCC-CCCTCCTCCCTCT-CCCT
* *
123931 ACCCTCCCCCCC-CGCCCCCCT
61 -CCC-CCCCCCCTCCCCCCCCC
* * *
123952 CCCCCA-TCCCCTCCCTCCTCCCCTCTCCTCCCCCT-C-CC-CCCCCTCCTCCC-CTCCC-CCCC
1 CCCCCACCCCCCCCCCCCCTCCCCTC-CCTCCCCCTCCTCCTCCCCCTCCTCCCTCTCCCTCCCC
124011 CACCCCCTCCCCCCCCAC
65 C-CCCCCTCCCCCCCC-C
* * *
124029 CCTTCCTCCCTCCCTCCCCCCTCCCGCTCCCTCCCCCTCCTCCTCCCTCCTCCATCCCTCTCCCT
1 CC-CCCACCC-CCCCCCCCCCTCCC-CTCCCTCCCCCTCCTCCTCCC-CCTCC-TCCCTCTCCCT
*
124094 CCCTCCCCCCTCCGCCCCACCC
61 CCCCCCCCCCTCC-CCCC-CCC
* * * * ** *
124116 CCCCCACCGCCCCCCCCCCCCCCCCACAC-CCCCCTCCACAACCCCCCCCTCCCTC-CCC-CCCT
1 CCCCCACC-CCCCCCCCCCCTCCCCTCCCTCCCCCTCCTCCTCCCCCTCCTCCCTCTCCCTCCC-
124178 CTCATCCCCC-CCCCCCCCC
64 C-C--CCCCCTCCCCCCCCC
* * * ***
124197 CCCTCATCCCCAACCTCCCCCC-CCCC-CCC-CCCCCTCC-CC-CCCCCATAACC-ACC-GAACC
1 CCCCCA-CCCC--CCCCCCCCCTCCCCTCCCTCCCCCTCCTCCTCCCCC-T--CCTCCCTCTCCC
* *
124255 -CCCCCCCCCCACCCCCCTCC
60 TCCCCCCCCCCTCCCCCCCCC
* * * * *
124275 CCCCCTCCCTCTCCCCCCCCTTCCCCTTCACTCCCACAGTACCTCCTCCCCCTGACCGCCCTC-C
1 CCCCCACCC-C-CCCCCCCCCTCCCC-TCCCTCCC-C-CT-CCTCCTCCCCCT--CCTCCCTCTC
*
124339 TCCTCCCCCCCCCTTCCCCCTACACCC
58 -CCTCCCCCCCCCCTCCCCC--C-CCC
* * *
124366 CACCCACCTCACCCTTCTCCCCCCCTCCCCCTCCCTCTCCCC-CCTCC-CCCCCCCCAACCC-C-
1 CCCCCA-C-C-CCC--C-CCCCCCCT-CCCCTCCCTC-CCCCTCCTCCTCCCCCTCC-TCCCTCT
* * * *
124427 ACCTCACCCCACCCTCTCCCCCCCT
57 CCCTCCCCCCCCCCTC-CCCCCCCC
* * *
124452 CCCCC-TCCCCCCCCCCCCTCTCCT-TCT-CCCCTCC-CC-CCCCCTCC-CCCTC-CCCTCCCCC
1 CCCCCACCCCCCCCCCCCCTCCCCTCCCTCCCCCTCCTCCTCCCCCTCCTCCCTCTCCCTCCCCC
* *
124510 ACACC-CCCCCCCCC
66 CCCCCTCCCCCCCCC
124524 CCCC
1 CCCC
124528 TCCTCTCACC
Statistics
Matches: 510, Mismatches: 76, Indels: 154
0.69 0.10 0.21
Matches are distributed among these distances:
72 11 0.02
73 4 0.01
74 12 0.02
75 21 0.04
76 9 0.02
77 22 0.04
78 31 0.06
79 28 0.05
80 56 0.11
81 61 0.12
82 34 0.07
83 19 0.04
84 35 0.07
85 26 0.05
86 46 0.09
87 15 0.03
88 28 0.05
89 7 0.01
90 4 0.01
91 11 0.02
92 7 0.01
93 2 0.00
94 2 0.00
95 13 0.03
96 6 0.01
ACGTcount: A:0.06, C:0.78, G:0.01, T:0.15
Consensus pattern (80 bp):
CCCCCACCCCCCCCCCCCCTCCCCTCCCTCCCCCTCCTCCTCCCCCTCCTCCCTCTCCCTCCCCC
CCCCCTCCCCCCCCC
Found at i:124260 original size:1 final size:1
Alignment explanation
Indices: 123840--124240 Score: 109
Period size: 1 Copynumber: 401.0 Consensus size: 1
123830 TCCCCCTCCT
* * * * * * * * *
123840 CCCCCCCCCTCTCCCCCCCCCTCCCCCCCCCCCCCGCCCCCTCCCCCCCCCCCTCTCCCCTCACC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
* * * * ** * * * ** * *
123905 CCCCCTCCACCCTCCCCCCCTCCCCTACCCTCCCCCCCCGCCCCCCTCCCCCATCCCCTCCCTCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
* * * * * * * * * * * **
123970 TCCCCTCTCCTCCCCCTCCCCCCCCTCCTCCCCTCCCCCCCCACCCCCTCCCCCCCCACCCTTCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
* * * * * * * * * * * * ** * * * *
124035 TCCCTCCCTCCCCCCTCCCGCTCCCTCCCCCTCCTCCTCCCTCCTCCATCCCTCTCCCTCCCTCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
* * * * * * * * * **
124100 CCCCTCCGCCCCACCCCCCCCACCGCCCCCCCCCCCCCCCCACACCCCCCTCCACAACCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
* * * * ** * ** ** *
124165 TCCCTCCCCCCCTCTCATCCCCCCCCCCCCCCCCCTCATCCCCAACCTCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
*
124230 CTCCCCCCCCC
1 CCCCCCCCCCC
124241 ATAACCACCG
Statistics
Matches: 257, Mismatches: 143, Indels: 0
0.64 0.36 0.00
Matches are distributed among these distances:
1 257 1.00
ACGTcount: A:0.04, C:0.81, G:0.01, T:0.13
Consensus pattern (1 bp):
C
Found at i:124270 original size:13 final size:14
Alignment explanation
Indices: 124252--124524 Score: 60
Period size: 14 Copynumber: 18.0 Consensus size: 14
124242 TAACCACCGA
124252 ACCCCCC-CCCCCC
1 ACCCCCCTCCCCCC
124265 ACCCCCCTCCCCCC
1 ACCCCCCTCCCCCC
*
124279 -CTCCCTCTCCCCCC
1 AC-CCCCCTCCCCCC
124293 -CCTTCCCCTTCACTCCCAC
1 ACC--CCCC-TC-C-CCC-C
* * *
124312 AGTACCTCCTCCCCCTG
1 A--CCCCCCTCCCCC-C
*
124329 ACCGCCCTCCTCCTCC
1 ACCCCCCTCC-CC-CC
* *
124345 CCCCCCCTTCCCCCT
1 ACCCCCC-TCCCCCC
* *
124360 ACACCCCACCCACCTC
1 ACCCCCCTCCC-CC-C
**
124376 ACCCTTCTCCCCCC
1 ACCCCCCTCCCCCC
124390 -CTCCCCCTCCCTCTCC
1 AC-CCCCCTCCC-C-CC
* *
124406 CCCCTCCCCCCCCCC
1 ACCC-CCCTCCCCCC
*
124421 AACCCCACCTCACCCC
1 -ACCCC-CCTCCCCCC
*
124437 A-CCCTCTCCCCCC
1 ACCCCCCTCCCCCC
124450 -CTCCCCCTCCCCCC
1 AC-CCCCCTCCCCCC
124464 -CCCCCCTCTCCTTCTCC
1 ACCCCCCTC-CC--C-CC
*
124481 -CCTCCCCCCCCCTCC
1 ACC-CCCCTCCCC-CC
*
124496 CCCTCCCCTCCCCCAC
1 ACC-CCCCTCCCCC-C
124512 ACCCCCC-CCCCCC
1 ACCCCCCTCCCCCC
124525 CCCTCCTCTC
Statistics
Matches: 195, Mismatches: 33, Indels: 64
0.67 0.11 0.22
Matches are distributed among these distances:
13 25 0.13
14 51 0.26
15 33 0.17
16 48 0.25
17 22 0.11
18 9 0.05
19 3 0.02
20 3 0.02
22 1 0.01
ACGTcount: A:0.07, C:0.77, G:0.01, T:0.15
Consensus pattern (14 bp):
ACCCCCCTCCCCCC
Found at i:124284 original size:12 final size:11
Alignment explanation
Indices: 124253--124300 Score: 53
Period size: 11 Copynumber: 4.3 Consensus size: 11
124243 AACCACCGAA
124253 CCCCCCCCC-C
1 CCCCCCCCCTC
*
124263 CCACCCCCCTC
1 CCCCCCCCCTC
124274 CCCCCCTCCCTC
1 CCCCCC-CCCTC
*
124286 TCCCCCCCCTTC
1 -CCCCCCCCCTC
124298 CCC
1 CCC
124301 TTCACTCCCA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
10 8 0.25
11 9 0.28
12 9 0.28
13 6 0.19
ACGTcount: A:0.02, C:0.85, G:0.00, T:0.12
Consensus pattern (11 bp):
CCCCCCCCCTC
Found at i:124326 original size:56 final size:60
Alignment explanation
Indices: 124266--124470 Score: 150
Period size: 60 Copynumber: 3.5 Consensus size: 60
124256 CCCCCCCCCA
* *
124266 CCCCCCTCCCCCCCTCCCTCTCCCCCCCCTT-CCCCTTCACTCCCA-CA-GT-A-CCTCCT
1 CCCCCCTCCCCCCCTCCCTCTCCCCCCCCTTCCCCCTACAC-CCCACCACCTCACCCTCCT
*
124322 -CCCCCTGACCGCCCTCCT-CCTC-CCCCCCCCTTCCCCCTACACCCCACCCACCTCACCCTTCT
1 CCCCCCT--CC-CCC-CCTCCCTCTCCCCCCCCTTCCCCCTACACCCCA-CCACCTCACCCTCCT
* ** * *
124384 CCCCCC-CTCCCCCTCCCTCTCCCCCCTCCCCCCCCCCA-ACCCCACCTCACCCCACCCT-CT
1 CCCCCCTCCCCCCCTCCCTCTCCCCCC-CCTTCCCCCTACACCCCA-C-CACCTCACCCTCCT
*
124444 CCCCCC-CTCCCCCTCCC-C-CCCCCCCCT
1 CCCCCCTCCCCCCCTCCCTCTCCCCCCCCT
124471 CTCCTTCTCC
Statistics
Matches: 125, Mismatches: 9, Indels: 29
0.77 0.06 0.18
Matches are distributed among these distances:
55 6 0.05
57 18 0.14
58 24 0.19
59 13 0.10
60 35 0.28
61 19 0.15
62 5 0.04
63 5 0.04
ACGTcount: A:0.07, C:0.75, G:0.01, T:0.17
Consensus pattern (60 bp):
CCCCCCTCCCCCCCTCCCTCTCCCCCCCCTTCCCCCTACACCCCACCACCTCACCCTCCT
Found at i:124390 original size:1 final size:1
Alignment explanation
Indices: 124384--124527 Score: 54
Period size: 1 Copynumber: 144.0 Consensus size: 1
124374 TCACCCTTCT
* * * * * ** * * * * * *
124384 CCCCCCCTCCCCCTCCCTCTCCCCCCTCCCCCCCCCCAACCCCACCTCACCCCACCCTCTCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
* * * * ** * * * * * * *
124449 CCTCCCCCTCCCCCCCCCCCCTCTCCTTCTCCCCTCCCCCCCCCTCCCCCTCCCCTCCCCCACAC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
124514 CCCCCCCCCCCCCC
1 CCCCCCCCCCCCCC
124528 TCCTCTCACC
Statistics
Matches: 95, Mismatches: 48, Indels: 0
0.66 0.34 0.00
Matches are distributed among these distances:
1 95 1.00
ACGTcount: A:0.05, C:0.82, G:0.00, T:0.13
Consensus pattern (1 bp):
C
Found at i:124401 original size:21 final size:20
Alignment explanation
Indices: 124381--124509 Score: 122
Period size: 19 Copynumber: 6.4 Consensus size: 20
124371 ACCTCACCCT
124381 TCTCCCCCCCTCCCCCTCCC
1 TCTCCCCCCCTCCCCCTCCC
124401 TCT-CCCCCCTCCCCC-CCC
1 TCTCCCCCCCTCCCCCTCCC
* * * *
124419 CCAACCCCACCTCACCCCACCC
1 TC-TCCCCCCCTC-CCCCTCCC
124441 TCTCCCCCCCTCCCCCTCCC
1 TCTCCCCCCCTCCCCCTCCC
* *
124461 -CCCCCCCCCTCTCCTTCTCCCC
1 TCTCCCCCCCTC-CC-CCT-CCC
*
124483 TCCCCCCCCCTCCCCCTCCC
1 TCTCCCCCCCTCCCCCTCCC
124503 -CTCCCCC
1 TCTCCCCC
124510 ACACCCCCCC
Statistics
Matches: 90, Mismatches: 11, Indels: 17
0.76 0.09 0.14
Matches are distributed among these distances:
18 4 0.04
19 28 0.31
20 22 0.24
21 16 0.18
22 9 0.10
23 11 0.12
ACGTcount: A:0.04, C:0.80, G:0.00, T:0.16
Consensus pattern (20 bp):
TCTCCCCCCCTCCCCCTCCC
Found at i:124412 original size:27 final size:24
Alignment explanation
Indices: 124384--124530 Score: 109
Period size: 25 Copynumber: 5.9 Consensus size: 24
124374 TCACCCTTCT
*
124384 CCCCCCCTCCCCCTCCCTCTCCCCC
1 CCCCCCCCCCCCCTCCC-CTCCCCC
* ** * *
124409 CTCCCCCCCCCCAACCCCACCTCAC
1 CCCCCCCCCCCCCTCCCCTCC-CCC
* * *
124434 CCCACCCTCTCCC-CCCCTCCCCC
1 CCCCCCCCCCCCCTCCCCTCCCCC
*
124457 TCCCCCCCCCCCCTCTCCTTCTCCCCTC
1 -CCCCCCCCCCCC-CTCC-CCTCCCC-C
124485 CCCCCCCCTCCCCCTCCCCTCCCCC
1 CCCCCCCC-CCCCCTCCCCTCCCCC
*
124510 ACACCCCCCCCCCC-CCCCTCC
1 -CCCCCCCCCCCCCTCCCCTCC
124531 TCTCACCAGA
Statistics
Matches: 95, Mismatches: 19, Indels: 17
0.73 0.15 0.13
Matches are distributed among these distances:
23 2 0.02
24 25 0.26
25 30 0.32
26 15 0.16
27 18 0.19
28 5 0.05
ACGTcount: A:0.05, C:0.82, G:0.00, T:0.14
Consensus pattern (24 bp):
CCCCCCCCCCCCCTCCCCTCCCCC
Found at i:124419 original size:61 final size:61
Alignment explanation
Indices: 124333--124471 Score: 178
Period size: 60 Copynumber: 2.3 Consensus size: 61
124323 CCCCTGACCG
* * *
124333 CCCT-CCTCCTCCCCCC-CCCTTCCCCCTACACCCCACC-CACCTCACCCTTCTCCCCCCCTCC
1 CCCTCCCT-CTCCCCCCTCCCTCCCCCCCA-ACCCCACCTCACCCCACCC-TCTCCCCCCCTCC
124394 CCCTCCCTCTCCCCCCTCCC-CCCCCCCAACCCCACCTCACCCCACCCTCTCCCCCCCTCC
1 CCCTCCCTCTCCCCCCTCCCTCCCCCCCAACCCCACCTCACCCCACCCTCTCCCCCCCTCC
* *
124454 CCCTCCCCCCCCCCCCTC
1 CCCTCCCTCTCCCCCCTC
124472 TCCTTCTCCC
Statistics
Matches: 70, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
60 37 0.53
61 27 0.39
62 6 0.09
ACGTcount: A:0.07, C:0.78, G:0.00, T:0.15
Consensus pattern (61 bp):
CCCTCCCTCTCCCCCCTCCCTCCCCCCCAACCCCACCTCACCCCACCCTCTCCCCCCCTCC
Found at i:124484 original size:42 final size:39
Alignment explanation
Indices: 123837--124571 Score: 133
Period size: 41 Copynumber: 17.8 Consensus size: 39
123827 CTCTCCCCCT
* * *
123837 CCTCCCCCCCCCTCTCCCCCCCCCTCCCCCCC-CCCCCCGC
1 CCTCTCCCCCCCTC-CCCCCCCCC-CCCCCCCTCACCCCAC
* * * *
123877 CCCCTCCCCCCCCCCCTCTCCCCTCACCCCCCCTCCACCCTCCC
1 CCTCTCCCCCCCTCCC-C-CCCC-CCCCCCCCCT-CACCC-CAC
* * *
123921 CCCCTCCCCTACCCTCCCCCCCCGCCCCCCTCCCCCATCCCCTC
1 CCTCTCCCC--CCCTCCCCCCCC-CCCCCC-CCCTCA-CCCCAC
* *
123965 CCTCCTCCCCTCTCCTCCCCCTCCCCCCCCTCCTC-CCCTC-C
1 CCT-CTCCCC-C-CCTCCCCCCCCCCCCCCCCCTCACCC-CAC
* *
124006 CC-CCCCACCCCCTCCCCCCCCACCCTTCCTCCCTC-CCTCC-C
1 CCTCTCC-CCCCCTCCCCCCCC-CCC--CCCCCCTCACC-CCAC
* * * *
124047 CC-CTCCCGCTCCCT--CCCCCTCCTCCTCCCTC-CTCCATC
1 CCTCTCCC-C-CCCTCCCCCCCCCCCCCCCCCTCACCCCA-C
* * *
124085 CCTCTCCCTCCCTCCCCCCTCCGCCCCACCC-C-CCCCAC
1 CCTCTCCCCCCCTCCCCCC-CCCCCCCCCCCTCACCCCAC
* * *
124123 CGC-C-CCCCCCC-CCCCCCCACACCCCCCTCCACAACCCCCC
1 C-CTCTCCCCCCCTCCCCCCC-C-CCCCCCCCCTC-ACCCCAC
*
124163 CCTCCCTCCCCCCCTCTCATCCCCCCCCCCCCCCCCCTCATCCCCAA
1 CCT--CT-CCCCCC-CTC--CCCC-CCCCCCCCCCCCTCA-CCCCAC
* * *
124210 CCTCCCCCCCCCCCCCCCCCCTCCCCCCCCCATAACCACCGAAC
1 CCTCTCCCCCCCTCCCCCCCC-CCCCCCCCC-TCACC-CC--AC
* * * * *
124254 CC-CCCCCCCCCACCCCCCTCCCCCCCTCCCTCTCCCCCC
1 CCTCTCCCCCCCTCCCCCC-CCCCCCCCCCCTCACCCCAC
* ** * * *
124293 CCT-TCCCCTTCACTCCCACAGTACCTCCTCCCCCTGACCGCC-C
1 CCTCTCCCC--CCCTCCC-C--CCCCCCCCCCCCCTCACC-CCAC
* * * *
124336 TCCTCCTCCCCCCC-CCTTCCCCCTACACCCCACC-CACCTCAC
1 -CCT-CTCCCCCCCTCC--CCCCC-CCCCCCCCCCTCACCCCAC
* *
124378 CCTTCTCCCCCCCTCCCCCTCCCTCTCCCCCCTC-CCCC-C
1 CC-TCTCCCCCCCTCCCCC-CCCCCCCCCCCCTCACCCCAC
* * * * *
124417 CCCCAACCCCACCTCACCCCACCCTCTCCCCCCCTC-CCCCTC
1 CCTC-TCCCCCCCTC-CCCC-CCC-CCCCCCCCCTCACCCCAC
* *
124459 CC-CCCCCCCCCTCTCCTTCTCCCCTCCCCCCCCCTC-CCCCTC
1 CCTCTCCCCCCCTC-CC--C-CCCC-CCCCCCCCCTCACCCCAC
** *
124501 CC-CTCCCCCACAC-CCCCCCCCCCCCCCTCCTCTCACCAGAT
1 CCTCTCCCCC-C-CTCCCCCCCCCCCCCC-CC-CTCACCCCAC
**
124542 CCTC-CAACCCC-CCCCCCCCCCCCCCCCCTC
1 CCTCTCCCCCCCTCCCCCCCCCCCCCCCCCTC
124572 TCTCCTCTCA
Statistics
Matches: 523, Mismatches: 92, Indels: 163
0.67 0.12 0.21
Matches are distributed among these distances:
35 1 0.00
36 9 0.02
37 28 0.05
38 26 0.05
39 66 0.13
40 69 0.13
41 90 0.17
42 59 0.11
43 54 0.10
44 59 0.11
45 26 0.05
46 13 0.02
47 16 0.03
48 5 0.01
49 2 0.00
ACGTcount: A:0.06, C:0.78, G:0.01, T:0.14
Consensus pattern (39 bp):
CCTCTCCCCCCCTCCCCCCCCCCCCCCCCCTCACCCCAC
Found at i:124518 original size:21 final size:21
Alignment explanation
Indices: 124404--124527 Score: 69
Period size: 21 Copynumber: 5.8 Consensus size: 21
124394 CCCTCCCTCT
*
124404 CCCCCCTCCCCCCCCCCA-AC
1 CCCCCCTCCCCTCCCCCACAC
* * * *
124424 CCCACCTCACCC-CACCCTCTC
1 CCCCCCTC-CCCTCCCCCACAC
* *
124445 CCCCCCTCCCCCTCCCCCCCCCC
1 CCCCCCT-CCCCT-CCCCCACAC
*
124468 CCTCTCCTTCTCCCCTCCCCC-CCC
1 CC-C-CC--CTCCCCTCCCCCACAC
124492 CTCCCCCTCCCCTCCCCCACAC
1 C-CCCCCTCCCCTCCCCCACAC
124514 CCCCCC-CCCC-CCCC
1 CCCCCCTCCCCTCCCC
124528 TCCTCTCACC
Statistics
Matches: 84, Mismatches: 9, Indels: 23
0.72 0.08 0.20
Matches are distributed among these distances:
19 4 0.05
20 15 0.18
21 30 0.36
22 4 0.05
23 10 0.12
24 6 0.07
25 8 0.10
26 5 0.06
27 2 0.02
ACGTcount: A:0.06, C:0.82, G:0.00, T:0.12
Consensus pattern (21 bp):
CCCCCCTCCCCTCCCCCACAC
Found at i:124577 original size:102 final size:102
Alignment explanation
Indices: 124384--124573 Score: 246
Period size: 102 Copynumber: 1.9 Consensus size: 102
124374 TCACCCTTCT
* *
124384 CCCCCCCTCCCCCTCCCTCTCCCCCCTCCCCCCCCCCAACCCCACCTCACCCCACCCTCTCCCCC
1 CCCCCCCTCCCCCTCCCTCTCCCCCCACCCCCCCCCCAACCCCACCTCACCACACCCTCTCCCCC
124449 CCTCCCCCTCCCCCCCCCCCCTCTCCTTCTCCCCTCC
66 CCTCCCCCTCCCCCCCCCCCCTCTCCTTCTCCCCTCC
* * * * *
124486 CCCCCCCTCCCCCTCCC-CTCCCCCACACCCCCCCCCC-CCCCCTCCTCTCACCAGATCCTC-CA
1 CCCCCCCTCCCCCTCCCTCTCCCCC-CACCCCCCCCCCAACCCC-AC-CTCACCACACCCTCTCC
*
124548 ACCCC-CCCCC-CCCCCCCCCCCCTCTC
63 CCCCCTCCCCCTCCCCCCCCCCCCTCTC
124574 TCCTCTCACC
Statistics
Matches: 77, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
100 16 0.21
101 16 0.21
102 34 0.44
103 11 0.14
ACGTcount: A:0.06, C:0.79, G:0.01, T:0.14
Consensus pattern (102 bp):
CCCCCCCTCCCCCTCCCTCTCCCCCCACCCCCCCCCCAACCCCACCTCACCACACCCTCTCCCCC
CCTCCCCCTCCCCCCCCCCCCTCTCCTTCTCCCCTCC
Found at i:124634 original size:40 final size:39
Alignment explanation
Indices: 124590--124677 Score: 95
Period size: 40 Copynumber: 2.2 Consensus size: 39
124580 CACCTTCGCT
** *
124590 CCTCCCCCCCCACCACCATTCCCTCCCCTCTCTCCCCCTC
1 CCTCCCCCCCCACCACCACACCCCCCCCTC-CTCCCCCTC
** * *
124630 CCTCCGTCCCCACCCCCACACCCCCCCCTCCTCCTCCTC
1 CCTCCCCCCCCACCACCACACCCCCCCCTCCTCCCCCTC
*
124669 ACTCCCCCC
1 CCTCCCCCC
124678 TCCTCCCCCC
Statistics
Matches: 38, Mismatches: 10, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
39 14 0.37
40 24 0.63
ACGTcount: A:0.08, C:0.74, G:0.01, T:0.17
Consensus pattern (39 bp):
CCTCCCCCCCCACCACCACACCCCCCCCTCCTCCCCCTC
Found at i:124685 original size:29 final size:30
Alignment explanation
Indices: 124614--124686 Score: 78
Period size: 29 Copynumber: 2.4 Consensus size: 30
124604 ACCATTCCCT
124614 CCCCTCTCTCCCCCTCCCTCCGTCCCCACCC
1 CCCCTC-CTCCCCCTCCCTCCGTCCCCACCC
* * * *
124645 CCACACCCCCCCCT-CCTCC-TCCTCACTCC
1 CCCCTCCTCCCCCTCCCTCCGTCCCCAC-CC
124674 CCCCTCCTCCCCC
1 CCCCTCCTCCCCC
124687 CCTACCACCC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
28 6 0.18
29 17 0.50
30 7 0.21
31 4 0.12
ACGTcount: A:0.05, C:0.75, G:0.01, T:0.18
Consensus pattern (30 bp):
CCCCTCCTCCCCCTCCCTCCGTCCCCACCC
Found at i:124701 original size:49 final size:49
Alignment explanation
Indices: 124611--124716 Score: 112
Period size: 49 Copynumber: 2.2 Consensus size: 49
124601 ACCACCATTC
* *
124611 CCTCC-CCTCTCTCCCCCTCCCTCCGTCCCCACCCCCACACCCCCCCCT
1 CCTCCTCCTCACTCCCCCTCCCTCCGCCCCCACCCCCACACCCCCCCCT
* *
124659 CCTCCTCCTCACTCCCCC-CTCCTCC-CCCCCTACCACCC-CACCCTCTCCT
1 CCTCCTCCTCACTCCCCCTC-CCTCCGCCCCC-ACC-CCCACACCCCCCCCT
*
124708 CCACCTCCT
1 CCTCCTCCT
124717 TCCCGATCCA
Statistics
Matches: 49, Mismatches: 5, Indels: 7
0.80 0.08 0.11
Matches are distributed among these distances:
48 10 0.20
49 36 0.73
50 3 0.06
ACGTcount: A:0.08, C:0.73, G:0.01, T:0.19
Consensus pattern (49 bp):
CCTCCTCCTCACTCCCCCTCCCTCCGCCCCCACCCCCACACCCCCCCCT
Found at i:124715 original size:32 final size:31
Alignment explanation
Indices: 124679--124785 Score: 83
Period size: 33 Copynumber: 3.3 Consensus size: 31
124669 ACTCCCCCCT
124679 CCTCCCCCCCTACCACCCCACCCTCTCCTCCA
1 CCTCCCCCCCTACCACCCC-CCCTCTCCTCCA
** *
124711 CCTCCTTCCCGATCCACCCCTCCCT-TCCTCCTA
1 CCTCCCCCCCTA-CCACCCC-CCCTCTCCTCC-A
* * *
124744 CCTTCCCCCCCTCCCTACCCCTCCTCT-ATCCA
1 CC-TCCCCCCCTACC-ACCCCCCCTCTCCTCCA
124776 CCCTCCCCCC
1 -CCTCCCCCC
124786 TTCTCCCCCC
Statistics
Matches: 59, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
32 23 0.39
33 24 0.41
34 12 0.20
ACGTcount: A:0.09, C:0.68, G:0.01, T:0.21
Consensus pattern (31 bp):
CCTCCCCCCCTACCACCCCCCCTCTCCTCCA
Found at i:124990 original size:20 final size:18
Alignment explanation
Indices: 124948--124991 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
124938 CCTTCATCTA
124948 CCCC-CCCCCCCCCACCT
1 CCCCTCCCCCCCCCACCT
*
124965 CTCCTCCCCCCCCCTACTCT
1 CCCCTCCCCCCCCC-AC-CT
124985 CCCCTCC
1 CCCCTCC
124992 TAAACCCCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 3 0.14
18 9 0.41
19 2 0.09
20 8 0.36
ACGTcount: A:0.05, C:0.80, G:0.00, T:0.16
Consensus pattern (18 bp):
CCCCTCCCCCCCCCACCT
Found at i:125006 original size:1 final size:1
Alignment explanation
Indices: 124996--125038 Score: 50
Period size: 1 Copynumber: 43.0 Consensus size: 1
124986 CCCTCCTAAA
* * * *
124996 CCCCCACCCCCCCACCACCACCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
125039 ACACCTCTTA
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
1 34 1.00
ACGTcount: A:0.09, C:0.91, G:0.00, T:0.00
Consensus pattern (1 bp):
C
Found at i:125087 original size:11 final size:11
Alignment explanation
Indices: 125073--125442 Score: 69
Period size: 11 Copynumber: 32.5 Consensus size: 11
125063 TCACCCCCTA
125073 CCCCCCCCTCC
1 CCCCCCCCTCC
*
125084 CCCCCCCCTCA
1 CCCCCCCCTCC
* ** *
125095 TCCTTCCCTTC
1 CCCCCCCCTCC
* * *
125106 TCCTCACC-CC
1 CCCCCCCCTCC
* *
125116 CTCCCTCCTCC
1 CCCCCCCCTCC
* *
125127 CCCCCCCTTCA
1 CCCCCCCCTCC
* *
125138 ACCTCCCCTCCC
1 CCCCCCCCT-CC
125150 CGCCCCCCCCTCTC
1 C-C-CCCCCCTC-C
*
125164 TCCCCCCACTCCC
1 -CCCCCCCCT-CC
125177 CTCCCTCACCCTCC
1 C-CCC-C-CCCTCC
**
125191 CCCGCCAACTCC
1 CCC-CCCCCTCC
*
125203 CCCCTCCC-CC
1 CCCCCCCCTCC
*
125213 CCCCCTCCTCC
1 CCCCCCCCTCC
* * *
125224 TCCTCCTCTCC
1 CCCCCCCCTCC
* ** *
125235 CTCCCTTCTCA
1 CCCCCCCCTCC
*
125246 CCTCC-CCT-C
1 CCCCCCCCTCC
*
125255 CCCTCCC-TCC
1 CCCCCCCCTCC
125265 CCCCCCGCC-CC
1 CCCCCC-CCTCC
125276 CCTCCCCCCTTCC
1 CC-CCCCCC-TCC
125289 CCGCCCCCACTGCC
1 CC-CCCCC-CT-CC
125303 CCCATCCCCCTCC
1 CCC--CCCCCTCC
* *
125316 CTCTCCCCTCC
1 CCCCCCCCTCC
125327 CCCTCCCCCT--
1 CCC-CCCCCTCC
*
125337 CCCCCCCCTTC
1 CCCCCCCCTCC
* *
125348 TCCCTCCCTCC
1 CCCCCCCCTCC
* * *
125359 CACCTCCGTCC
1 CCCCCCCCTCC
*
125370 AACCCCCTCCCT-A
1 --CCCCC-CCCTCC
125383 CCCCCCCCTCC
1 CCCCCCCCTCC
* *
125394 CCCACACC-CC
1 CCCCCCCCTCC
*
125404 CCCCTCCCTCAC
1 CCCCCCCCTC-C
*
125416 CCTCCCCC-CC
1 CCCCCCCCTCC
* *
125426 CCTCCCACTCC
1 CCCCCCCCTCC
125437 CCCCCC
1 CCCCCC
125443 TAACACACTA
Statistics
Matches: 253, Mismatches: 73, Indels: 66
0.65 0.19 0.17
Matches are distributed among these distances:
9 10 0.04
10 44 0.17
11 109 0.43
12 25 0.10
13 33 0.13
14 24 0.09
15 8 0.03
ACGTcount: A:0.05, C:0.76, G:0.02, T:0.18
Consensus pattern (11 bp):
CCCCCCCCTCC
Found at i:125125 original size:15 final size:13
Alignment explanation
Indices: 125073--125442 Score: 76
Period size: 14 Copynumber: 27.5 Consensus size: 13
125063 TCACCCCCTA
125073 CCCCCCCCT-C-C
1 CCCCCCCCTCCTC
*
125084 CCCCCCCCTCATC
1 CCCCCCCCTCCTC
* **
125097 CTTCCCTTCTCCTC
1 C-CCCCCCCTCCTC
125111 ACCCCCTCCCTCCTC
1 -CCCCC-CCCTCCTC
125126 CCCCCCCCT--TC
1 CCCCCCCCTCCTC
* * *
125137 AACCTCCCCTCCCC
1 -CCCCCCCCTCCTC
125151 GCCCCCCCCTCTCTC
1 -CCCCCCCCTC-CTC
125166 CCCCCACTCC-CCTC
1 CCCCC-C-CCTCCTC
* *
125180 CCTCACCCTCC-C
1 CCCCCCCCTCCTC
*
125192 CCGCCAACTCCCCCCTCC
1 CC-CC--C-CCCTCCT-C
125210 CCCCCCCCTCCT-
1 CCCCCCCCTCCTC
* *
125222 CCTCCTCCT-CTC
1 CCCCCCCCTCCTC
* *
125234 CCTCCCTTCTCACCTC
1 CC-CCC--CCCTCCTC
*
125250 CCCTCCCCTCCCTC
1 CCCCCCCCT-CCTC
125264 CCCCCCCGC-CC-C
1 CCCCCCC-CTCCTC
125276 CCTCCCCCCT--TC
1 CC-CCCCCCTCCTC
*
125288 CCCGCCCCC-ACTGC
1 CCC-CCCCCTCCT-C
*
125302 CCCCATCCC-CCTC
1 CCCC-CCCCTCCTC
*
125315 CCTCTCCCCTCC-C
1 CC-CCCCCCTCCTC
*
125328 CCTCCCCCTCC-C
1 CCCCCCCCTCCTC
**
125340 CCCCCTTCTCCCTC
1 CCCCCCCCT-CCTC
*
125354 CCTCCCACCTCCGTC
1 CC-CCCCCCTCC-TC
** *
125369 CAACCCCCTCCCTA
1 CCCCCCCCT-CCTC
125383 CCCCCCCCTCC-C
1 CCCCCCCCTCCTC
*
125395 CCACACCCCCCCCTC
1 CC-C-CCCCCTCCTC
* *
125410 CCTCACCCTCC-C
1 CCCCCCCCTCCTC
125422 CCCCCCTCC-CACTC
1 CCCCCC-CCTC-CTC
125436 CCCCCCC
1 CCCCCCC
125443 TAACACACTA
Statistics
Matches: 258, Mismatches: 55, Indels: 90
0.64 0.14 0.22
Matches are distributed among these distances:
11 14 0.05
12 55 0.21
13 47 0.18
14 96 0.37
15 29 0.11
16 12 0.05
17 2 0.01
18 3 0.01
ACGTcount: A:0.05, C:0.76, G:0.02, T:0.18
Consensus pattern (13 bp):
CCCCCCCCTCCTC
Found at i:125156 original size:40 final size:41
Alignment explanation
Indices: 125073--125170 Score: 112
Period size: 40 Copynumber: 2.4 Consensus size: 41
125063 TCACCCCCTA
* *
125073 CCCCCC-CCTCCCCCCCCCCTCATCCTTCCCTTCTCCTCACC
1 CCCCCCTCCTCCCCCCCCCCTCAACCTTCCC-TCTCCCCACC
* *
125114 CCCTCCCTCCTCCCCCCCCCTTCAACC-TCCC-CTCCCCGCC
1 CCC-CCCTCCTCCCCCCCCCCTCAACCTTCCCTCTCCCCACC
125154 CCCCCCTCTCTCCCCCC
1 CCCCCCTC-CTCCCCCC
125171 ACTCCCCTCC
Statistics
Matches: 50, Mismatches: 4, Indels: 7
0.82 0.07 0.11
Matches are distributed among these distances:
39 5 0.10
40 18 0.36
41 3 0.06
42 7 0.14
43 17 0.34
ACGTcount: A:0.04, C:0.76, G:0.01, T:0.19
Consensus pattern (41 bp):
CCCCCCTCCTCCCCCCCCCCTCAACCTTCCCTCTCCCCACC
Found at i:125170 original size:54 final size:57
Alignment explanation
Indices: 125100--125423 Score: 144
Period size: 60 Copynumber: 5.6 Consensus size: 57
125090 CCTCATCCTT
* * ** *
125100 CCCTTCTCCTCACCCCCTCCCTCCTC-CCC-CCCCCTTCAAC-CTCCCCTCCCCGCCC
1 CCCTCCTCCTCCCCCCCTCCCTCCTCACCCTCCCCCGCCAACTCCCCCCTCCCC-CCC
125155 CCC-CCTCTCTCCCCCCACTCCCCTCCCTCACCCTCCCCCGCCAACTCCCCCCTCCCCCCC
1 CCCTCCTC-CTCCCCCC-CT-CCCT-CCTCACCCTCCCCCGCCAACTCCCCCCTCCCCCCC
* *
125215 CCCTCCTCCTCCTCCTCTCCCTCCCTTCTCA-CCTCCCCTC-CC--CTCCCTCCCCCCCCGCCC
1 CCCTCCTCCT-C-CC-C-CCCTCCCTCCTCACCCTCCCC-CGCCAACTCCC-CCCTCCCC-CCC
* * * *
125275 CCCTCCCCCCTTCCCCGCCC-CCACTGCC-C-CCATCCCCCTCC--CTCTCCCCTCCCCCTCC
1 CCCT-CCTCC-TCCCC-CCCTCC-CT-CCTCACCCTCCCCCGCCAACTCCCCCCTCCCCC-CC
** * * * * *
125333 CCCTCC-CC-CCCCTTCTCCCTCC-CTCCCACCTCCGTCCAACCCCCTCCCT-ACCCCC
1 CCCTCCTCCTCCCCCCCTCCCTCCTCACCCTCCCCCG-CCAACTCCC-CCCTCCCCCCC
* * *
125388 CCCTCCCCCACACCCCC-CCCTCCCTCACCCTCCCCC
1 CCCTCCTCCTCCCCCCCTCCCT-CCTCACCCTCCCCC
125424 CCCCTCCCAC
Statistics
Matches: 209, Mismatches: 28, Indels: 61
0.70 0.09 0.20
Matches are distributed among these distances:
52 3 0.01
53 9 0.04
54 11 0.05
55 18 0.09
56 16 0.08
57 17 0.08
58 33 0.16
59 29 0.14
60 36 0.17
61 25 0.12
62 7 0.03
63 3 0.01
64 2 0.01
ACGTcount: A:0.05, C:0.75, G:0.02, T:0.18
Consensus pattern (57 bp):
CCCTCCTCCTCCCCCCCTCCCTCCTCACCCTCCCCCGCCAACTCCCCCCTCCCCCCC
Found at i:125223 original size:43 final size:40
Alignment explanation
Indices: 125075--125443 Score: 151
Period size: 39 Copynumber: 9.0 Consensus size: 40
125065 ACCCCCTACC
* *
125075 CCCCCCTCCCCCCCCCCTCATCCTTCCCTTCTCCTCACC-CCCT
1 CCCCCCTCCCCCCCCCCTCCTCCCTCCC--CTCC-C-CCGCCCT
* * **
125118 CCCTCCT-CCCCCCCCCTTCAACCTCCCCT-CCCCGCCC-
1 CCCCCCTCCCCCCCCCCTCCTCCCTCCCCTCCCCCGCCCT
125155 CCCCCTCTCTCCCCCCACTCC-CCTCCCTCACCCTCCCCCGCCAACT
1 CCCCC-CTC-CCCCCC-C-CCTCCTCCCTC-CCCTCCCCCGCC--CT
* *
125201 CCCCCCTCCCCCCCCCCTCCT-CCTCCTCCTCTCCCTCCCTT
1 CCCCCCTCCCCCCCCCCTCCTCCCTCC-CCTCCCCCGCCC-T
* * * *
125242 CTCACCT-CCCCTCCCCTCCCTCCC-CCCC-CGCCC-CCCT
1 CCCCCCTCCCCCCCCCCT-CCTCCCTCCCCTCCCCCGCCCT
* * * * *
125279 CCCCCCTTCCCCGCCCCC-ACTGCC-CCCATCCCCCTCCCT
1 CCCCCC-TCCCCCCCCCCTCCTCCCTCCCCTCCCCCGCCCT
* * * *
125318 CTCCCCTCCCCCTCCCCCTCC-CCC-CCCTTCTCCCTCCCT
1 CCCCCCTCCCCC-CCCCCTCCTCCCTCCCCTCCCCCGCCCT
* * * *
125357 CCCACCTCCGTCCAACCCCCTCCCTACCCCCCCCTCCCCCACACC-
1 CCCCCCTCC--CC-CCCCCCT-CCT-CCCTCCCCTCCCCCGC-CCT
*
125402 CCCCCCTCCCTCACCCTCCC-CCCCCCTCCCACTCCCCC-CCCT
1 CCCCCCTCCC-C-CCC-CCCTCCTCCCTCCC-CTCCCCCGCCCT
125444 AACACACTAC
Statistics
Matches: 252, Mismatches: 40, Indels: 69
0.70 0.11 0.19
Matches are distributed among these distances:
37 18 0.07
38 19 0.08
39 48 0.19
40 21 0.08
41 28 0.11
42 47 0.19
43 27 0.11
44 13 0.05
45 24 0.10
46 7 0.03
ACGTcount: A:0.05, C:0.75, G:0.02, T:0.18
Consensus pattern (40 bp):
CCCCCCTCCCCCCCCCCTCCTCCCTCCCCTCCCCCGCCCT
Found at i:125305 original size:100 final size:102
Alignment explanation
Indices: 125144--125339 Score: 231
Period size: 100 Copynumber: 1.9 Consensus size: 102
125134 TTCAACCTCC
* * *
125144 CCTCCCCGCCCCCCCCTCTCTCCCCCCACTCCCCTCCCTCACCCTCCCCCGCCAACTCCCCCCTC
1 CCTCCCCGCCCCCCCCTCTCTCCCCCCACCCCCCTCCCTCACCCTCCCCCCCCAACTCCCCCATC
* *
125209 CCCC-CCCCCTCCTCCTCCTCCTCTCCCTCCCTTCTCA
66 CCCCTCCCCCTCC-CCTCCCCCTCCCCCTCCCTTCTCA
* * * * *
125246 CCTCCCCTCCCCTCCCTC-C-CCCCCCGCCCCCCTCCC-C-CCTTCCCCGCCCCCACTGCCCCCA
1 CCTCCCCGCCCCCCCCTCTCTCCCCCCACCCCCCTCCCTCACCCTCCCC-CCCCAACT-CCCCCA
*
125307 TCCCCCTCCCTCTCCCCTCCCCCTCCCCCTCCC
64 TCCCCCTCCCCCTCCCCTCCCCCTCCCCCTCCC
125340 CCCCCTTCTC
Statistics
Matches: 80, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
98 7 0.09
99 7 0.09
100 42 0.52
101 8 0.10
102 16 0.20
ACGTcount: A:0.04, C:0.76, G:0.03, T:0.18
Consensus pattern (102 bp):
CCTCCCCGCCCCCCCCTCTCTCCCCCCACCCCCCTCCCTCACCCTCCCCCCCCAACTCCCCCATC
CCCCTCCCCCTCCCCTCCCCCTCCCCCTCCCTTCTCA
Found at i:125413 original size:35 final size:34
Alignment explanation
Indices: 125374--125443 Score: 88
Period size: 35 Copynumber: 2.0 Consensus size: 34
125364 CCGTCCAACC
125374 CCCT-CCCTACCCCCCCCTCCCCCACACCCCCCCCT
1 CCCTACCCT-CCCCCCCC-CCCCCACACCCCCCCCT
* *
125409 CCCTCACCCTCCCCCCCCCTCCCACTCCCCCCCCT
1 CCCT-ACCCTCCCCCCCCCCCCCACACCCCCCCCT
125444 AACACACTAC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
35 19 0.61
36 8 0.26
37 4 0.13
ACGTcount: A:0.07, C:0.80, G:0.00, T:0.13
Consensus pattern (34 bp):
CCCTACCCTCCCCCCCCCCCCCACACCCCCCCCT
Found at i:125443 original size:15 final size:15
Alignment explanation
Indices: 125308--125443 Score: 64
Period size: 15 Copynumber: 8.4 Consensus size: 15
125298 CTGCCCCCAT
*
125308 CCCCCTCCCTCTCCCC
1 CCCCCTCCCACT-CCC
*
125324 TCCCCCTCCCCCTCCC
1 -CCCCCTCCCACTCCC
125340 CCCCCTTCTCC-CTCCC
1 CCCCC-TC-CCACTCCC
* *
125356 TCCCACCT-CC-GTCCAA
1 -CCC-CCTCCCACTCC-C
125372 CCCCCTCCCTAC-CCC
1 CCCCCTCCC-ACTCCC
* *
125387 CCCCTCCCCCACACCC
1 CCCC-CTCCCACTCCC
125403 CCCCCTCCCTCACCCTCCCC
1 CCCCCT-CC-CA--CT-CCC
125423 CCCCCTCCCACTCCC
1 CCCCCTCCCACTCCC
125438 CCCCCT
1 CCCCCT
125444 AACACACTAC
Statistics
Matches: 96, Mismatches: 8, Indels: 32
0.71 0.06 0.24
Matches are distributed among these distances:
14 3 0.03
15 31 0.32
16 27 0.28
17 19 0.20
18 4 0.04
19 3 0.03
20 9 0.09
ACGTcount: A:0.06, C:0.77, G:0.01, T:0.16
Consensus pattern (15 bp):
CCCCCTCCCACTCCC
Found at i:125557 original size:13 final size:14
Alignment explanation
Indices: 125532--125560 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
125522 CTTTATCCTC
125532 CCCCCGCCTCCCCA
1 CCCCCGCCTCCCCA
125546 CCCCCGCC-CCCCA
1 CCCCCGCCTCCCCA
125559 CC
1 CC
125561 TCCACCTACC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.07, C:0.83, G:0.07, T:0.03
Consensus pattern (14 bp):
CCCCCGCCTCCCCA
Found at i:125594 original size:19 final size:19
Alignment explanation
Indices: 125570--125661 Score: 73
Period size: 18 Copynumber: 4.7 Consensus size: 19
125560 CTCCACCTAC
125570 CCCCTCCTCCCCCCTCCCT
1 CCCCTCCTCCCCCCTCCCT
*
125589 CCCCTCCTCCCCCCCCTTACCCCC
1 CCCCTCCT--CCCCCC-T--CCCT
**
125613 CCCCTCC-CCCCCCTGTCT
1 CCCCTCCTCCCCCCTCCCT
125631 CCCC-CCTCCCCCCTCCAC-
1 CCCCTCCTCCCCCCTCC-CT
*
125649 CCCCTCATCCCCC
1 CCCCTCCTCCCCC
125662 ACCCCCCCCC
Statistics
Matches: 58, Mismatches: 7, Indels: 16
0.72 0.09 0.20
Matches are distributed among these distances:
17 2 0.03
18 16 0.28
19 16 0.28
20 1 0.02
21 12 0.21
22 1 0.02
24 10 0.17
ACGTcount: A:0.03, C:0.78, G:0.01, T:0.17
Consensus pattern (19 bp):
CCCCTCCTCCCCCCTCCCT
Found at i:125604 original size:21 final size:20
Alignment explanation
Indices: 125528--125643 Score: 101
Period size: 21 Copynumber: 5.5 Consensus size: 20
125518 TATCCTTTAT
125528 CCTCCCCCCGCCTCCC-CACCC
1 CCTCCCCCC-CCTCCCTC-CCC
* *
125549 CCGCCCCCCACCTCCACCTACCC
1 CCTCCCCCC-CCT-C-CCTCCCC
125572 CCTCCTCCCCCCTCCCTCCCC
1 CCTCC-CCCCCCTCCCTCCCC
125593 TCCTCCCCCCCCTTACCC-CCCC
1 -CCTCCCCCCCC-T-CCCTCCCC
**
125615 CCTCCCCCCCCTGTCTCCCC
1 CCTCCCCCCCCTCCCTCCCC
125635 CCTCCCCCC
1 CCTCCCCCC
125644 TCCACCCCCT
Statistics
Matches: 80, Mismatches: 7, Indels: 17
0.77 0.07 0.16
Matches are distributed among these distances:
19 1 0.01
20 14 0.17
21 34 0.43
22 12 0.15
23 15 0.19
24 4 0.05
ACGTcount: A:0.04, C:0.78, G:0.03, T:0.15
Consensus pattern (20 bp):
CCTCCCCCCCCTCCCTCCCC
Found at i:125612 original size:12 final size:10
Alignment explanation
Indices: 125528--125643 Score: 90
Period size: 11 Copynumber: 10.9 Consensus size: 10
125518 TATCCTTTAT
*
125528 CCTCCCCCCG
1 CCTCCCCCCC
125538 CCTCCCCACCC
1 CCTCCCC-CCC
* *
125549 CCGCCCCCCA
1 CCTCCCCCCC
125559 CCTCCACCTACCC
1 CCTCC-CC--CCC
*
125572 CCTCCTCCCC
1 CCTCCCCCCC
125582 CCTCCCTCCCC
1 CCTCCC-CCCC
125593 TCCTCCCCCCC
1 -CCTCCCCCCC
*
125604 CTTACCCCCCC
1 CCT-CCCCCCC
125615 CCT-CCCCCC
1 CCTCCCCCCC
* *
125624 CCTGTCTCCCC
1 CCT-CCCCCCC
125635 CCTCCCCCC
1 CCTCCCCCC
125644 TCCACCCCCT
Statistics
Matches: 85, Mismatches: 12, Indels: 18
0.74 0.10 0.16
Matches are distributed among these distances:
9 9 0.11
10 27 0.32
11 35 0.41
12 7 0.08
13 7 0.08
ACGTcount: A:0.04, C:0.78, G:0.03, T:0.15
Consensus pattern (10 bp):
CCTCCCCCCC
Found at i:125829 original size:27 final size:26
Alignment explanation
Indices: 125790--125841 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
125780 ACCCACCTCC
*
125790 CCCCCCTCCCATCCCCACCCCTTCCCT
1 CCCCCCTACCATCCCC-CCCCTTCCCT
* *
125817 CCCCCCTATCATCCTCCCCCTTCCC
1 CCCCCCTACCATCCCCCCCCTTCCC
125842 CCCTCACCCC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 9 0.41
27 13 0.59
ACGTcount: A:0.08, C:0.71, G:0.00, T:0.21
Consensus pattern (26 bp):
CCCCCCTACCATCCCCCCCCTTCCCT
Found at i:126098 original size:37 final size:37
Alignment explanation
Indices: 126031--126112 Score: 109
Period size: 37 Copynumber: 2.2 Consensus size: 37
126021 CCCTCTTCGG
126031 CTCT-CCCCCCCCCCCCTCCTCCATCTCCCCACCCTC
1 CTCTCCCCCCCCCCCCCTCCTCCATCTCCCCACCCTC
126067 C-CTCCCCCCACCCCCCCGATCCTCC-TC-CCCCACCCTC
1 CTCTCCCCCC-CCCCCCC--TCCTCCATCTCCCCACCCTC
126104 CTCTCCCCC
1 CTCTCCCCC
126113 TTCCGCTCCG
Statistics
Matches: 41, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
35 2 0.05
36 6 0.15
37 18 0.44
38 9 0.22
39 6 0.15
ACGTcount: A:0.06, C:0.76, G:0.01, T:0.17
Consensus pattern (37 bp):
CTCTCCCCCCCCCCCCCTCCTCCATCTCCCCACCCTC
Found at i:126127 original size:52 final size:49
Alignment explanation
Indices: 126034--126199 Score: 137
Period size: 52 Copynumber: 3.3 Consensus size: 49
126024 TCTTCGGCTC
* * *
126034 TCCCCCCCCCCCCTCCTCCATCTCCCCACCCTCCCT-CCCCCCACCCCCCCGA
1 TCCCCTCCCCCAC-CCTCCATCTCCCC-CTC-CCCTACCCCCC-CCCCCCCGA
**
126086 TCCTCCTCCCCCACCCTCC-TCTCCCCCTTCCGCTCCGCCCCCCCCCCCCCG-
1 TCC-CCTCCCCCACCCTCCATCTCCCCC-TCC-C-CTACCCCCCCCCCCCCGA
*
126137 -CCCC-CCCCTC-CCCTCCATCTCCTCCTCCCCTACCCCCCCCCCCCCGCA
1 TCCCCTCCCC-CACCCTCCATCTCCCCCTCCCCTACCCCCCCCCCCCCG-A
126185 TCCCCTGCCCCCACC
1 TCCCCT-CCCCCACC
126200 GTACCTCACT
Statistics
Matches: 94, Mismatches: 7, Indels: 27
0.73 0.05 0.21
Matches are distributed among these distances:
46 15 0.16
47 1 0.01
48 13 0.14
49 14 0.15
50 5 0.05
51 15 0.16
52 17 0.18
53 14 0.15
ACGTcount: A:0.05, C:0.76, G:0.04, T:0.15
Consensus pattern (49 bp):
TCCCCTCCCCCACCCTCCATCTCCCCCTCCCCTACCCCCCCCCCCCCGA
Found at i:126137 original size:14 final size:15
Alignment explanation
Indices: 126120--126149 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
126110 CCCTTCCGCT
126120 CCGCCCCCCCC-CCC
1 CCGCCCCCCCCTCCC
126134 CCGCCCCCCCCTCCC
1 CCGCCCCCCCCTCCC
126149 C
1 C
126150 TCCATCTCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.00, C:0.90, G:0.07, T:0.03
Consensus pattern (15 bp):
CCGCCCCCCCCTCCC
Found at i:126212 original size:47 final size:46
Alignment explanation
Indices: 126123--126248 Score: 109
Period size: 46 Copynumber: 2.7 Consensus size: 46
126113 TTCCGCTCCG
* *
126123 CCCCCCCCCCCCCGCCCCCCCCTCCCCTCCATCTCCTCCTCCCCTA
1 CCCCCCCCCCCCCGCCACCCCCTCCCCTCCACCTCCTCCTCCCCTA
* *
126169 CCCCCCCCCCCCCG-CATCCCCTGCCC-CCACCGTACCTCACTCCCC--
1 CCCCCCCCCCCCCGCCACCCCCTCCCCTCCACC-T-CCTC-CTCCCCTA
* *
126214 CCCCCCACCCCTCCTCCCCCCCCCCTCCCC-CCACC
1 CCCCCC-CCCC-CC-CGCCACCCCCTCCCCTCCACC
126249 GAACCTCGCC
Statistics
Matches: 65, Mismatches: 8, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
44 4 0.06
45 16 0.25
46 22 0.34
47 8 0.12
48 1 0.02
49 14 0.22
ACGTcount: A:0.06, C:0.79, G:0.03, T:0.12
Consensus pattern (46 bp):
CCCCCCCCCCCCCGCCACCCCCTCCCCTCCACCTCCTCCTCCCCTA
Found at i:126226 original size:20 final size:19
Alignment explanation
Indices: 126035--126243 Score: 65
Period size: 19 Copynumber: 10.7 Consensus size: 19
126025 CTTCGGCTCT
126035 CCCCCCCC-CCCCTCCTCC
1 CCCCCCCCACCCCTCCTCC
** *
126053 ATCTCCCCA-CCCTCCCTCC
1 CCCCCCCCACCCCT-CCTCC
*
126072 CCCCACCCC-CCCGATCCT--
1 CCCC-CCCCACCC-CTCCTCC
*
126090 CCTCCCCCA-CCCTCCTCTC
1 CCCCCCCCACCCCTCCTC-C
** * * * *
126109 CCCCTTCCGCTCCGCCCCC
1 CCCCCCCCACCCCTCCTCC
*
126128 CCCCCCCCGCCCC-CC-CC
1 CCCCCCCCACCCCTCCTCC
* * *
126145 TCCCCTCCATCTCCTCCTCC
1 CCCCCCCCA-CCCCTCCTCC
* *
126165 CCTACCCCCCCCCCCCCGCATCC
1 CC--CCCCCCACCCCTC-C-TCC
*
126188 CCTGCCCCCACCGTACCTCACTCC
1 CC-CCCCCCACC---CCTC-CTCC
126212 CCCCCCCCACCCCTCCTCC
1 CCCCCCCCACCCCTCCTCC
*
126231 CCCCCCCCTCCCC
1 CCCCCCCCACCCC
126244 CCACCGAACC
Statistics
Matches: 136, Mismatches: 35, Indels: 39
0.65 0.17 0.19
Matches are distributed among these distances:
16 4 0.03
17 14 0.10
18 17 0.12
19 40 0.29
20 21 0.15
21 5 0.04
22 13 0.10
23 13 0.10
24 5 0.04
25 4 0.03
ACGTcount: A:0.06, C:0.77, G:0.03, T:0.14
Consensus pattern (19 bp):
CCCCCCCCACCCCTCCTCC
Found at i:126238 original size:14 final size:14
Alignment explanation
Indices: 126212--126245 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
126202 ACCTCACTCC
126212 CCCCCCCCACCCCT
1 CCCCCCCCACCCCT
126226 CCTCCCCCC-CCCCT
1 CC-CCCCCCACCCCT
126240 CCCCCC
1 CCCCCC
126246 ACCGAACCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 4 0.21
14 9 0.47
15 6 0.32
ACGTcount: A:0.03, C:0.88, G:0.00, T:0.09
Consensus pattern (14 bp):
CCCCCCCCACCCCT
Found at i:126365 original size:26 final size:25
Alignment explanation
Indices: 126276--126770 Score: 106
Period size: 27 Copynumber: 19.8 Consensus size: 25
126266 TAACACCACT
* *
126276 TCCTCTCCCC-CCCT-CCTTCCCCC
1 TCCTCCCCCCTCCCTCCCCTCCCCC
126299 -CCTCCCCCCTCTCC-CCCC-CCCACC
1 TCCTCCCCCCTC-CCTCCCCTCCC-CC
*
126323 CCCTATCCCCCCT--CTCCCCTCCCCC
1 TCC--TCCCCCCTCCCTCCCCTCCCCC
126348 TCCTCCCCCCTCCGCTCCCCTCCCCCC
1 TCCTCCCCCCTCC-CTCCCCT-CCCCC
* * *
126375 TCGTTCGGCCCC-CCC-CCCC-CCCAC
1 TC-CTC-CCCCCTCCCTCCCCTCCCCC
* *
126399 TCC-CCCCCCTCCCTCTCCTCCCGC
1 TCCTCCCCCCTCCCTCCCCTCCCCC
* *
126423 TACC-CCACACCTCCCATCCCAT--CCC
1 T-CCTCC-CCCCTCCC-TCCCCTCCCCC
* *
126448 -CC-GCCCCCTCCCTCCTC-CCCCC
1 TCCTCCCCCCTCCCTCCCCTCCCCC
* *
126470 TCCTCCCCCTTCTCCCCCCCCCCCCCC
1 TCCTCCCCC--CTCCCTCCCCTCCCCC
* * *
126497 CCCTTCCCGCC-CCCTTCCCTCCGCCC
1 TCC-TCCCCCCTCCCTCCCCTCC-CCC
126523 -CC-CCCTCCCTCCC-CCCCTCCCCC
1 TCCTCCC-CCCTCCCTCCCCTCCCCC
* *
126546 ACC-CCCCTCC-CCCACCCCATCCCCC
1 TCCTCCCC-CCTCCCTCCCC-TCCCCC
* * *
126571 TCCCGCCCCCCCATCCCCCCTCCCCCCCC
1 T-CC-TCCCCCC-TCCCTCC-CCTCCCCC
* *
126600 TCTTCCCCCCATCCC-CCCGCACCCCC
1 TCCTCCCCCC-TCCCTCCC-CTCCCCC
* * *
126626 GCCCCCTCCCCTCCC-CCTTCCCCCCCC
1 TCCTCC-CCCCTCCCTCC--CCTCCCCC
*
126653 TCCACTCCCCCC-CCC-CCCC-CACCC
1 T-C-CTCCCCCCTCCCTCCCCTCCCCC
*
126677 -CC-CCCCCCTTCC-CCCCTCCGCCC
1 TCCTCCCCCCTCCCTCCCCTCC-CCC
* * *
126700 -CCCCCCCGCCTCCCACACCCCCCCCC
1 TCCTCCCC-CCTCCCTC-CCCTCCCCC
* *
126726 ACTCTACCTCCC-CCC-CCCCTCCCCC
1 TC-CT-CCCCCCTCCCTCCCCTCCCCC
*
126751 -CCTCCTTCCCCTCCTTCCCC
1 TCCTCC--CCCCTCCCTCCCC
126771 CGCTCACAAC
Statistics
Matches: 360, Mismatches: 50, Indels: 121
0.68 0.09 0.23
Matches are distributed among these distances:
20 6 0.02
21 14 0.04
22 26 0.07
23 37 0.10
24 53 0.15
25 53 0.15
26 61 0.17
27 64 0.18
28 23 0.06
29 21 0.06
30 2 0.01
ACGTcount: A:0.04, C:0.78, G:0.03, T:0.15
Consensus pattern (25 bp):
TCCTCCCCCCTCCCTCCCCTCCCCC
Found at i:126510 original size:121 final size:116
Alignment explanation
Indices: 126330--126691 Score: 294
Period size: 121 Copynumber: 3.0 Consensus size: 116
126320 ACCCCCTATC
* * *
126330 CCCCCTCTCCCCT-CCCCCTCCTCCCCC-CTCCGCTCCCCTCCCCCCTCGTTCGGCC-CCCCC-C
1 CCCCCTC-CCCCTCCCCCCTCCTCCCCCTCTCC-C-CCCCCCCCCCCACCTTC--CCGCCCCCTC
* * *
126391 CCCCCCACTCCCCCCCCTCCCTCTCCTCCCGCTACCCCACACCTCCCATCCCATCCCCCG
61 CCCCCC-CTCCCCCCCCTCCC-CCCCTCCC-CCACCCCACACC-CCCACCCCATCCCCCG
*
126451 CCCCCTCCCTCCTCCCCCCTCCTCCCCCTTCTCCCCCCCCCCCCCCCCCTTCCCGCCCCCTTCCC
1 CCCCCTCCC-CCTCCCCCCTCCTCCCCC-TCTCCCCCCCCCCCCCCACCTTCCCGCCCCC-TCCC
* * *
126516 TCCGCCC-CCCCCTCCCTCCCCCCCTCCCCCACCCCCCTCCCCCACCCCATCCCCCT
63 -CC-CCCTCCCCC-CCCTCCCCCCCTCCCCCACCCCACACCCCCACCCCATCCCCCG
* *
126572 CCCGCC-CCCCCATCCCCCCTCCCCCCCCTCTTCCCCCCATCCCCCCGCACC--CCCGCCCCCTC
1 CCC-CCTCCCCC-TCCCCCCTCCTCCCCCTC-TCCCCCC--CCCCCCCCACCTTCCCGCCCCCT-
* * *
126634 CCCTCCCCCTTCCCCCCCCTCCACTCCCC-CCCCCCCCCCAC-CCCCCCCCCCTTCCCCC
60 CCC-CCCCC-TCCCCCCCCTCC-C-CCCCTCCCCCACCCCACACCCCCACCCCATCCCCC
126692 CTCCGCCCCC
Statistics
Matches: 205, Mismatches: 16, Indels: 40
0.79 0.06 0.15
Matches are distributed among these distances:
120 12 0.06
121 93 0.45
122 55 0.27
123 29 0.14
124 14 0.07
125 2 0.01
ACGTcount: A:0.04, C:0.78, G:0.03, T:0.15
Consensus pattern (116 bp):
CCCCCTCCCCCTCCCCCCTCCTCCCCCTCTCCCCCCCCCCCCCCACCTTCCCGCCCCCTCCCCCC
CCTCCCCCCCCTCCCCCCCTCCCCCACCCCACACCCCCACCCCATCCCCCG
Found at i:126598 original size:53 final size:49
Alignment explanation
Indices: 126474--126855 Score: 203
Period size: 52 Copynumber: 7.5 Consensus size: 49
126464 CCCCCCTCCT
* **
126474 CCCCCTTCTCCCCC-CCCCCCCCCCCCTTCCCGCCCCCTTCCCTCCGCCCCC
1 CCCCCTTC-CCCCCTCCCCCCCCCCCCCTCCC-CCCCCCACCC-CCGCCCCC
* * *
126525 CCCTCCCTCCCCCC-CTCCCCCACCCCCCTCCCCCACCCCATCCCCCTCCCGCC
1 CCC-CCTTCCCCCCTC-CCCCCCCCCCCCTCCCCC-CCCCA-CCCCCGCCC-CC
*
126578 CCCCCATCCCCCCTCCCCCCCCTCTTCCCC-CCATCCCCCCGCACCCCCGCCCCC
1 CCCCCTTCCCCCCTCCCCCCCC-C--CCCCTCC--CCCCCC-CACCCCCGCCCCC
* * * * *
126632 TCCCC-TCCCCCTTCCCCCCCCTCCACTCCCCCCCCC-CCCCCACCCCCC
1 CCCCCTTCCCCCCTCCCCCCCCCCCCCTCCCCCCCCCACCCCC-GCCCCC
* * * *
126680 CCCCCTTCCCCCCTCCGCCCCCCCCCC-GCCTCCCACACCCCC-CCCCAC
1 CCCCCTTCCCCCCTCCCCCCCCCCCCCTCCCCCCCCCACCCCCGCCCC-C
** * * **
126728 TCTACC-TCCCCCC-CCCCTCCCCCCCTCCTTCCCCTCCTTCCCCCGCTCACAACCC
1 -CCCCCTTCCCCCCTCCCC-CCCCCCC-CCTCCCCCCCCCACCCCCG--C-C--CCC
* *
126783 CCCCCCTCCCCCTCGTCCCCCCCCCCCCC-CCCCCCCCCCCCCTCCG-CCCC
1 CCCCCTTCCCCC-C-TCCCCCCCCCCCCCTCCCCCCCCCACCC-CCGCCCCC
* *
126833 GCCCC-GCCCCCCTCCCCCCCCCC
1 CCCCCTTCCCCCCTCCCCCCCCCC
126856 ACTCCCACTC
Statistics
Matches: 260, Mismatches: 39, Indels: 68
0.71 0.11 0.19
Matches are distributed among these distances:
47 23 0.09
48 32 0.12
49 38 0.15
50 19 0.07
51 13 0.05
52 42 0.16
53 26 0.10
54 12 0.05
55 31 0.12
56 13 0.05
57 7 0.03
58 4 0.02
ACGTcount: A:0.04, C:0.81, G:0.03, T:0.12
Consensus pattern (49 bp):
CCCCCTTCCCCCCTCCCCCCCCCCCCCTCCCCCCCCCACCCCCGCCCCC
Found at i:126607 original size:140 final size:141
Alignment explanation
Indices: 126440--126704 Score: 330
Period size: 140 Copynumber: 1.9 Consensus size: 141
126430 CACCTCCCAT
* * *
126440 CCCATCCCCCGCCCCCTCCCTCCTCCCCCC-TCCTCCCC-CTTCTCCC-CCCCC-CCCC-CCCCC
1 CCCATCCCCCGCCCCCCCCCTCCTCCCCCCATCC-CCCCGC-ACCCCCGCCCCCTCCCCTCCCCC
* *
126500 TTCCCGCCCCCTTCC-CTCCGCCCCCCCCTCCCTCCCCCCCTCCCCCACCCCCCTCC-CCCACCC
64 TTCCC-CCCCC-TCCACTCC-CCCCCCCCCCCCACCCCCCC-CCCCCACCCCCCTCCGCCCACCC
126563 CATCCCCCTCCCGCCCC
125 CATCCCCCTCCCGCCCC
*
126580 CCCATCCCCC-CTCCCCCCCCTCTTCCCCCCATCCCCCCGCACCCCCGCCCCCTCCCCTCCCCCT
1 CCCATCCCCCGC-CCCCCCCCTCCTCCCCCCATCCCCCCGCACCCCCGCCCCCTCCCCTCCCCCT
** *
126644 TCCCCCCCCTCCACTCCCCCCCCCCCCCCACCCCCCCCCCCTTCCCCCCTCCGCCCCCCCC
65 TCCCCCCCCTCCACTCCCCCCCCCCCCCCACCCCCCCCCCCCACCCCCCTCCGCCCACCCC
126705 CCGCCTCCCA
Statistics
Matches: 108, Mismatches: 9, Indels: 15
0.82 0.07 0.11
Matches are distributed among these distances:
139 1 0.01
140 47 0.44
141 37 0.34
142 13 0.12
143 10 0.09
ACGTcount: A:0.03, C:0.81, G:0.03, T:0.13
Consensus pattern (141 bp):
CCCATCCCCCGCCCCCCCCCTCCTCCCCCCATCCCCCCGCACCCCCGCCCCCTCCCCTCCCCCTT
CCCCCCCCTCCACTCCCCCCCCCCCCCCACCCCCCCCCCCCACCCCCCTCCGCCCACCCCATCCC
CCTCCCGCCCC
Found at i:126736 original size:41 final size:38
Alignment explanation
Indices: 126530--126845 Score: 139
Period size: 41 Copynumber: 7.9 Consensus size: 38
126520 CCCCCCCCTC
* *
126530 CCTCCCCCCCTCCCCCACCCCC-CTCCCCCACCCCATCCC-
1 CCTCCCCCCC-CCCCC-CCCCCAC-CCCCCCCCCCTTCCCA
* * * *
126569 CCTCCCGCCCCCCCATCCCCCC-TCCCCCCCCTCTTCCCC
1 CCTCCC-CCCCCCC-CCCCCCCACCCCCCCCCCCTTCCCA
* * *
126608 CCATCCCCCCGCACCCCCGCCCCC-TCCCCTCCCCCTTCCCCCC
1 CC-TCCCCCC-C-CCCCC-CCCCCACCCCCCCCCCCTT--CCCA
*
126651 CCTCCACTCCCCCCCCCCCCCCACCCCCCCCCCCTTCCCC
1 CCTCC-C-CCCCCCCCCCCCCCACCCCCCCCCCCTTCCCA
*
126691 CCTCCGCCCCCCCCCCGCCTCCCACACCCCCCCCCAC-T-CTA
1 CCTCC-CCCCCCCCCC-CC-CCCAC-CCCCCCCCC-CTTCCCA
* ** * *
126732 CCTCCCCCCCCCCTCCCCCCCTCCTTCCCCTCCTTCCCC
1 CCTCCCCCCCCCC-CCCCCCCACCCCCCCCCCCTTCCCA
*
126771 CGCTCACAACCCCCCCCCTCCCCCTCGTCCCCCCCCCCC--CCC-
1 C-CTC-C--CCCCCCCCC-CCCCC-C-ACCCCCCCCCCCTTCCCA
* * *
126813 CC-CCCCCCCCCCTCCGCCCCGCCCCGCCCCCCT
1 CCTCCCCCCCCCC-CCCCCCCACCCCCCCCCCCT
126846 CCCCCCCCCC
Statistics
Matches: 224, Mismatches: 25, Indels: 59
0.73 0.08 0.19
Matches are distributed among these distances:
35 10 0.04
36 1 0.00
37 13 0.06
38 20 0.09
39 35 0.16
40 37 0.17
41 39 0.17
42 31 0.14
43 25 0.11
44 4 0.02
45 9 0.04
ACGTcount: A:0.05, C:0.80, G:0.03, T:0.12
Consensus pattern (38 bp):
CCTCCCCCCCCCCCCCCCCCACCCCCCCCCCCTTCCCA
Found at i:126752 original size:121 final size:119
Alignment explanation
Indices: 126481--126830 Score: 291
Period size: 121 Copynumber: 2.8 Consensus size: 119
126471 CCTCCCCCTT
* * *
126481 CTCCCCCCCCCCCCCCCCCTTCCCGCCCCCTTCCCTCCGCCCCCCCCTCCCTCCCCCCCTCCCCC
1 CTCCCCCCCCCCCCCCCCC-TCCCCCCCCCTTCCC-CC-CCCTCCACT-CC-CCCCCCC-CCCCC
* * * * * *
126546 ACCCCCCTCCCCCACCCCATCCCCCTCCCGCCCCCCCATCCCCCCTCCCCCCCCTCTTCCCCC
60 ACCCCCC-CCCCCCCCCCCTCCCCC-CCC-CCCCGCCATCCCCACTCCCCCCCCACTTCCCAC
126609 CATCCCCCCGCACCCCCGCCCCCTCCCCTCCCCCTTCCCCCCCCTCCACTCCCCCCCCCCCCCCA
1 C-TCCCCCC-C-CCCCC-CCCCCTCCCC-CCCCCTTCCCCCCCCTCCACTCCCCCCCCCCCCCCA
*
126674 CCCCCCCCCCCTTCCCCCCTCCGCCCCCCCCCCGCC-TCCCACAC-CCCCCCCCAC-T-CTAC
61 CCCCCCCCCCC--CCCCCCTCC-CCCCCCCCCCGCCATCCC-CACTCCCCCCCCACTTCCCAC
* *
126733 CTCCCCCCCCCCTCCCCCCCTCCTTCCCCTCCTT-CCCCCGCTCACAAC-CCCCCCCCTCCCCCT
1 CTCCCCCCCCCC-CCCCCCCTCC--CCCCCCCTTCCCCCCCCTC-C-ACTCCCCCCCC-CCCCC-
* *
126796 CGTCCCCCCCCCCCCCCCCC-CCCCCCCCCTCCGCC
59 C-ACCCCCCCCCCCCCCCCCTCCCCCCCCCCCCGCC
126831 CCGCCCCGCC
Statistics
Matches: 191, Mismatches: 14, Indels: 41
0.78 0.06 0.17
Matches are distributed among these distances:
121 31 0.16
122 20 0.10
123 22 0.12
124 4 0.02
125 12 0.06
126 18 0.09
127 20 0.10
128 18 0.09
129 12 0.06
130 8 0.04
131 11 0.06
132 15 0.08
ACGTcount: A:0.04, C:0.81, G:0.03, T:0.12
Consensus pattern (119 bp):
CTCCCCCCCCCCCCCCCCCTCCCCCCCCCTTCCCCCCCCTCCACTCCCCCCCCCCCCCCACCCCC
CCCCCCCCCCCCTCCCCCCCCCCCCGCCATCCCCACTCCCCCCCCACTTCCCAC
Found at i:126872 original size:50 final size:48
Alignment explanation
Indices: 126338--126877 Score: 188
Period size: 47 Copynumber: 10.9 Consensus size: 48
126328 TCCCCCCTCT
* * * * * * * **
126338 CCCCTCCCCCTCCTCCCCCCTCCGCTCCCCTCC-CCCCTCGTTCGGCC
1 CCCCCCCCCCCCCTCCCCCCCCCCCTCCCCTCCTCCCCCCCTCCAACC
* *
126385 CCCCCCCCCCCCACTCCCCCCCCTCCCTCTCCTCCCGCTACCCCACACCTCCCATCC
1 CCCCCCCCCCCC-CTCCCCCCCC-CCCTC-CC-CTC-CT-CCCC-C-CCT-CCAACC
* * * * *
126442 CATCCCCCGCCCCCT--CCCTCCTCC-CCCCTCCTCCCCCTTCTCC--CC
1 C-CCCCCCCCCCCCTCCCCCCCCCCCTCCCCTCCTCCCCC-CCTCCAACC
*
126487 CCCCCCCCCCCCCTTCCCGCCCCCTTCCCTCCGCC-CC-CCCCTCCCTCC-CCC
1 CCCCCCCCCCCCC-TCCC-CCCCC--CCCTCC-CCTCCTCCCC-CCCTCCAACC
* * * *
126538 CCTCCCCCACCCCCCTCCCCCACCCCAT-CCC-CCTCCCGCCCCCCCATCC
1 CC-CCCCC-CCCCCCTCCCCCCCCCCCTCCCCTCCTCCC-CCCCTCCAACC
* ** * * * *
126587 CCCCTCCCCCCCCT-CTTCCCCCCATCCCC-CCGCACCCCCGCC--CC
1 CCCCCCCCCCCCCTCCCCCCCCCCCTCCCCTCCTCCCCCCCTCCAACC
* * * * *
126631 CTCCCCTCCCCCTTCCCCCCCCTCCACTCCCC-CCCCCCCCCCACC--CC
1 CCCCCCCCCCCCCTCCCCCCCC-CC-CTCCCCTCCTCCCCCCCTCCAACC
* * *
126678 CCCCCCCTTCCCCCCTCCGCCCCCCCCC-CGCCTCC-CACACCCCCCCCCACTC
1 CCCCCCC--CCCCCCTCC-CCCCCCCCCTCCCCTCCTC-C-CCCCCTCCAAC-C
* * * *
126730 TACCTCCCCCCCCCCTCCCCCCCTCCTTCCCCTCCTTCCCCCGCTCACAACC
1 --CCCCCCCCCCCCCTCCCCCCCCCCCTCCCCTCC-TCCCCCCCTC-CAACC
* * *
126782 CCCCCCCTCCCCCTCGTCCCCCCCCCCC-CCCCCCCCCCCCCCCTCC-GCC
1 CCCCCCC-CCCCC-C-TCCCCCCCCCCCTCCCCTCCTCCCCCCCTCCAACC
*
126831 CCGCCCCGCCCCCCTCCCCCCCCCCACTCCCACTCCTCCCCCCCTCC
1 CC-CCCCCCCCCCCTCCCCCCCCCC-CTCCC-CTCCTCCCCCCCTCC
126878 TCCTTCCTCC
Statistics
Matches: 376, Mismatches: 65, Indels: 101
0.69 0.12 0.19
Matches are distributed among these distances:
44 22 0.06
45 9 0.02
46 16 0.04
47 68 0.18
48 35 0.09
49 45 0.12
50 44 0.12
51 38 0.10
52 43 0.11
53 21 0.06
54 13 0.03
55 5 0.01
56 2 0.01
57 6 0.02
58 9 0.02
ACGTcount: A:0.04, C:0.79, G:0.03, T:0.14
Consensus pattern (48 bp):
CCCCCCCCCCCCCTCCCCCCCCCCCTCCCCTCCTCCCCCCCTCCAACC
Found at i:126874 original size:1 final size:1
Alignment explanation
Indices: 126483--126855 Score: 116
Period size: 1 Copynumber: 373.0 Consensus size: 1
126473 TCCCCCTTCT
** * ** * * * * * *
126483 CCCCCCCCCCCCCCCCCTTCCCGCCCCCTTCCCTCCGCCCCCCCCTCCCTCCCCCCCTCCCCCAC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
* * ** * * ** * * ** **
126548 CCCCCTCCCCCACCCCATCCCCCTCCCGCCCCCCCATCCCCCCTCCCCCCCCTCTTCCCCCCATC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
* * * * * ** * * * *
126613 CCCCCGCACCCCCGCCCCCTCCCCTCCCCCTTCCCCCCCCTCCACTCCCCCCCCCCCCCCACCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
** * * * * * * * * ** *
126678 CCCCCCCTTCCCCCCTCCGCCCCCCCCCCGCCTCCCACACCCCCCCCCACTCTACCTCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
* * ** * ** * * * ** * * **
126743 CCTCCCCCCCTCCTTCCCCTCCTTCCCCCGCTCACAACCCCCCCCCTCCCCCTCGTCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
* * * * *
126808 CCCCCCCCCCCCCCCCCTCCGCCCCGCCCCGCCCCCCTCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
126856 ACTCCCACTC
Statistics
Matches: 253, Mismatches: 119, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
1 253 1.00
ACGTcount: A:0.04, C:0.81, G:0.03, T:0.12
Consensus pattern (1 bp):
C
Found at i:126933 original size:130 final size:133
Alignment explanation
Indices: 126645--126935 Score: 332
Period size: 130 Copynumber: 2.2 Consensus size: 133
126635 CCTCCCCCTT
*
126645 CCCCCCCCTCCACTCCCCCCCCCCCCCCACCCCCCCCCCCTTCCCCCCTCCGCCCCCCCCCCGCC
1 CCCCCCCCTCC-CTCCCCTCCCCCCCCCACCCCCCCCCCC-TCCCCCCTCCGCCCCCCCCCCGCC
* *
126710 TCCCACACCCCCCCCCACTCTACCTCCCCCCCCCCTCCCCCCCTCCTTCCCCTCCTTCCCCCGCT
64 CCCCACACCCCCCCCCACTCCACCTCCCCCCCCCCTCCCCCCCTCCTTCCCCTCCTTCCCCCGCT
126775 CACAAC
129 CAC-AC
* *
126781 CCCCCCCCTCCC-CCTCGTCCCCCCCCC-CCCCCCCCCCC-CCCCCCTCCG-CCCCGCCCCGCCC
1 CCCCCCCCTCCCTCC-CCTCCCCCCCCCACCCCCCCCCCCTCCCCCCTCCGCCCCCCCCCCGCCC
* * * *
126842 CCCTC-CCCCCCCCCACTCC-CACTCCTCCCCCCCT-CCTCCTTCC-TCCCCTCCATCTCCTCAC
65 CCCACACCCCCCCCCACTCCAC-CTCCCCCCCCCCTCCCCCCCTCCTTCCCCTCC-T-TCC-C-C
*
126903 CTCTC-C-C
125 CGCTCACAC
126910 CCCCCCCCTCCCTCCCACTCCCCCCC
1 CCCCCCCCTCCCTCCC-CTCCCCCCC
126936 ACCTCACTAC
Statistics
Matches: 136, Mismatches: 11, Indels: 22
0.80 0.07 0.13
Matches are distributed among these distances:
128 8 0.06
129 23 0.17
130 38 0.28
131 17 0.12
132 15 0.11
134 13 0.10
135 11 0.08
136 11 0.08
ACGTcount: A:0.05, C:0.79, G:0.02, T:0.13
Consensus pattern (133 bp):
CCCCCCCCTCCCTCCCCTCCCCCCCCCACCCCCCCCCCCTCCCCCCTCCGCCCCCCCCCCGCCCC
CCACACCCCCCCCCACTCCACCTCCCCCCCCCCTCCCCCCCTCCTTCCCCTCCTTCCCCCGCTCA
CAC
Found at i:126962 original size:13 final size:13
Alignment explanation
Indices: 126294--127062 Score: 198
Period size: 12 Copynumber: 57.0 Consensus size: 13
126284 CCCCCTCCTT
126294 CCCC-CCCTCCCC
1 CCCCTCCCTCCCC
*
126306 CCTCTCCC-CCCC
1 CCCCTCCCTCCCC
126318 CCACC-CCCTATCCCC
1 CC-CCTCCC--TCCCC
*
126333 CCTCTCCCCTCCCC
1 CCCCT-CCCTCCCC
* *
126347 CTCCTCCC-CCCT
1 CCCCTCCCTCCCC
* *
126359 CCGCTCCC-CTCC
1 CCCCTCCCTCCCC
** **
126371 CCCCTCGTTCGGC
1 CCCCTCCCTCCCC
126384 CCCC-CCC-CCCC
1 CCCCTCCCTCCCC
*
126395 CCACTCCC-CCCC
1 CCCCTCCCTCCCC
126407 CTCCCTCTCCTCCCGC
1 C-CCCTC-CCTCCC-C
* *
126423 TACCCCACACCTCCCAT
1 --CCCCTC-CCTCCC-C
* *
126440 CCCATCCC-CCGC
1 CCCCTCCCTCCCC
126452 CCCCTCCCTCCTCC
1 CCCCTCCCTCC-CC
126466 CCCCT-CCTCCCC
1 CCCCTCCCTCCCC
** *
126478 CTTCTCCCCCCCCC
1 CCCCT-CCCTCCCC
*
126492 CCCCCCCCTTCCCGC
1 CCCCTCCC-TCCC-C
*
126507 CCCCTTCCCTCCGC
1 CCCC-TCCCTCCCC
*
126521 CCCC-CCCTCCCT
1 CCCCTCCCTCCCC
126533 CCCC-CCCTCCCC
1 CCCCTCCCTCCCC
126545 CACCC-CCCTCCCC
1 C-CCCTCCCTCCCC
* *
126558 CACC-CCATCCCC
1 CCCCTCCCTCCCC
*
126570 CTCCCGCCC-CCCC
1 C-CCCTCCCTCCCC
*
126583 ATCCC-CCCTCCCC
1 -CCCCTCCCTCCCC
*
126596 CCCCT-CTTCCCC
1 CCCCTCCCTCCCC
* *
126608 CCATCCCCCCGCACCC
1 CC--CCTCCCTC-CCC
126624 CCGCC-CCCTCCCC
1 CC-CCTCCCTCCCC
* *
126637 TCCC-CCTTCCCC
1 CCCCTCCCTCCCC
126649 CCCCTCCACTCCCC
1 CCCCTCC-CTCCCC
* *
126663 CCCCCCCCCCACCC
1 CCCCTCCCTC-CCC
*
126677 CCCCCCCCTTCCCC
1 CCCCTCCC-TCCCC
* *
126691 CCTCCGCCCCCCCC
1 CC-CCTCCCTCCCC
*
126705 CCGCCTCCCACACCC
1 CC-CCTCCCTC-CCC
*
126720 CCCCCCACTCTACCTCC
1 CCCCTC-C-CT-CC-CC
*
126737 CCCCCCCCT-CCC
1 CCCCTCCCTCCCC
*
126749 CCCCTCCTTCCCC
1 CCCCTCCCTCCCC
*
126762 TCCTTCCCCCGCTCACAACC
1 -CC--CCTCC-CTC-C--CC
126782 CCCC-CCCTCCCC
1 CCCCTCCCTCCCC
* *
126794 CTCGTCCC-CCCC
1 CCCCTCCCTCCCC
126806 CCCC-CCC-CCCC
1 CCCCTCCCTCCCC
* *
126817 CCCCCCCCT-CCG
1 CCCCTCCCTCCCC
* *
126829 CCCCGCCC-CGCC
1 CCCCTCCCTCCCC
126841 CCCCTCCC-CCCC
1 CCCCTCCCTCCCC
* *
126853 CCCACTCCCACTCCT
1 CCC-CTCCCTC-CCC
126868 CCCC-CCCTCCTCC
1 CCCCTCCCTCC-CC
** **
126881 TTCCTCCCCTCCAT
1 CCCCT-CCCTCCCC
*
126895 CTCCTCACCTCTCCC
1 CCCCTC-CCTC-CCC
*
126910 CCCCCCCCTCCCTC
1 CCCCTCCCTCCC-C
*
126924 CCACT-CC-CCCC
1 CCCCTCCCTCCCC
* *
126935 CACCTCACTACCCC
1 CCCCTCCCT-CCCC
126949 CCCTCTCCCTCCCC
1 CCC-CTCCCTCCCC
126963 CCCCTCCCTCTCTCCC
1 CCCCT-CC-CTC-CCC
* *
126979 CGCCCCCCCTCCTCA
1 C-CCCTCCCTCC-CC
*
126994 CCCC-CCTTCCCC
1 CCCCTCCCTCCCC
127006 GCCTCCTCCTCCTACCCC
1 -CC-CCT-C-CCT-CCCC
*
127024 ACCCCTCCCTCCAC
1 -CCCCTCCCTCCCC
* *
127038 CCCCTACCT-CCT
1 CCCCTCCCTCCCC
*
127050 CGCCTCCCTCCCC
1 CCCCTCCCTCCCC
127063 TTTCCATCCG
Statistics
Matches: 563, Mismatches: 115, Indels: 157
0.67 0.14 0.19
Matches are distributed among these distances:
11 20 0.04
12 162 0.29
13 105 0.19
14 130 0.23
15 74 0.13
16 29 0.05
17 31 0.06
18 8 0.01
19 2 0.00
20 2 0.00
ACGTcount: A:0.05, C:0.77, G:0.03, T:0.15
Consensus pattern (13 bp):
CCCCTCCCTCCCC
Found at i:127005 original size:21 final size:21
Alignment explanation
Indices: 126457--127013 Score: 98
Period size: 21 Copynumber: 26.8 Consensus size: 21
126447 CCCGCCCCCT
126457 CCCTCCTCCCCCCTCCTC-CCC
1 CCCTCC-CCCCCCTCCTCACCC
*
126478 CTTCTCCCCCCCC-CC-C-CCC
1 C-CCTCCCCCCCCTCCTCACCC
* * *
126497 CCCTTCCCGCCC-CCT-TCCC
1 CCCTCCCCCCCCTCCTCACCC
* *
126516 TCCGCCCCCCCCTCCCTC-CCC
1 CCCTCCCCCCCCT-CCTCACCC
*
126537 CCCTCCCCCACCCCCCTC-CCC
1 CCCTCCCCC-CCCTCCTCACCC
* *
126558 CACC-CCATCCCCCTCC-CGCCC
1 C-CCTCC-CCCCCCTCCTCACCC
*
126579 CCC-CATCCCCCCTCC-C-CCC
1 CCCTC-CCCCCCCTCCTCACCC
* *
126598 CCTCTTCCCCCCATCC-C-CCC
1 CC-CTCCCCCCCCTCCTCACCC
* *
126618 GCACC-CCCGCCCCCTCCCCTCCC
1 -C-CCTCCC-CCCCCTCCTCACCC
* * *
126641 CCTTCCCCCCCCTCCACTCCC
1 CCCTCCCCCCCCTCCTCACCC
*
126662 CCC-CCCCCCCCACC-C-CCC
1 CCCTCCCCCCCCTCCTCACCC
**
126680 CCC-CCTTCCCC-CCTC-CGCC
1 CCCTCCCCCCCCTCCTCAC-CC
*
126699 CCC-CCCCCGCCTCC-CACACC
1 CCCTCCCCCCCCTCCTCAC-CC
* * *
126719 CCC-CCCCACTCTACCTCCCCC
1 CCCTCCCCCCCCT-CCTCACCC
*
126740 CCCCCTCCCCCCCTCCTTC-CCC
1 CCCTC-CCCCCCCTCC-TCACCC
* * * *
126762 TCCTTCCCCCGCTCAC-AACCC
1 CCCTCCCCCCCCTC-CTCACCC
*
126783 CCC-CCCTCCCCCTCGTC-CCC
1 CCCTCCC-CCCCCTCCTCACCC
* *
126803 CCC-CCCCCCCC-CCCCCCCC
1 CCCTCCCCCCCCTCCTCACCC
* *
126822 CCCTCCGCCCCGC-CC-CGCCC
1 CCCTCC-CCCCCCTCCTCACCC
*
126842 CCCTCCCCCCCCCCACTC-CCAC
1 CCCTCCCCCCCCTC-CTCACC-C
* *
126864 TCCT-CCCCCCCTCCT--CCT
1 CCCTCCCCCCCCTCCTCACCC
* *
126882 TCCTCCCCTCCATCTCCTCACCTC
1 CCCTCCCC-CC-CCTCCTCACC-C
126906 TCCC-CCCCCCCCTCCCTC-CCAC
1 -CCCTCCCCCCCCT-CCTCACC-C
* * *
126928 TCC-CCCCCACCTCACTACCCCC
1 CCCTCCCCCCCCTC-CT-CACCC
*
126950 CCTCTCCCTCCCCCCCCTC-CCTC
1 CC-CTCCC-CCCCCTCCTCACC-C
*
126973 TCTCCCCGCCCCCCCTCCTCACCC
1 -C-CCTC-CCCCCCCTCCTCACCC
* *
126997 CCCTTCCCCGCCTCCTC
1 CCCTCCCCCCCCTCCTC
127014 CTCCTACCCC
Statistics
Matches: 409, Mismatches: 69, Indels: 116
0.69 0.12 0.20
Matches are distributed among these distances:
17 2 0.00
18 30 0.07
19 54 0.13
20 83 0.20
21 136 0.33
22 45 0.11
23 25 0.06
24 22 0.05
25 12 0.03
ACGTcount: A:0.04, C:0.78, G:0.03, T:0.15
Consensus pattern (21 bp):
CCCTCCCCCCCCTCCTCACCC
Found at i:127107 original size:9 final size:10
Alignment explanation
Indices: 127086--127120 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
127076 ATCCCCTCCT
127086 CCTCACCCCCC
1 CCTCA-CCCCC
*
127097 CCCCACCCCC
1 CCTCACCCCC
127107 CCTCACCCCC
1 CCTCACCCCC
127117 CCTC
1 CCTC
127121 CACCGCACCC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 18 0.82
11 4 0.18
ACGTcount: A:0.09, C:0.83, G:0.00, T:0.09
Consensus pattern (10 bp):
CCTCACCCCC
Found at i:127203 original size:14 final size:15
Alignment explanation
Indices: 127175--127208 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
127165 CTCCACCCCT
127175 CCTCCCTCCGACCTC
1 CCTCCCTCCGACCTC
*
127190 CCTCCCTCTG-CCTC
1 CCTCCCTCCGACCTC
127204 CCTCC
1 CCTCC
127209 TCCTTAGCCC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.03, C:0.68, G:0.06, T:0.24
Consensus pattern (15 bp):
CCTCCCTCCGACCTC
Found at i:127397 original size:33 final size:31
Alignment explanation
Indices: 127358--127551 Score: 100
Period size: 31 Copynumber: 6.1 Consensus size: 31
127348 CCTCTCAAAT
127358 CCCTCCCCCCCCTCCCCCACCCACTCCCCTTCC
1 CCCTCCCCCCCCTCCCCC-CCCACTCCCC-TCC
* *
127391 CCCT--CCCCCTTCCCCCCCCTCTCCTCCTCAC
1 CCCTCCCCCCCCTCCCCCCCCACTCC-CCTC-C
* * *
127422 CCCCCCCCCCTCACACCCCCCCCCACTTCCCTCC
1 CCCTCCCCCC-C-C-TCCCCCCCCACTCCCCTCC
*
127456 CCCTCCCCCATCCTCCCCCCCGC-C-CCCCT--
1 CCCTCCCCC-CCCTCCCCCCC-CACTCCCCTCC
***
127485 CCCTCCTGGTCCCTCCCCCCCTC-CTCCCC-CC
1 CCCTCC-CCCCCCTCCCCCCC-CACTCCCCTCC
* *
127516 CCCATCCCCTCCCC-CCCCCCCCCCTCCATCTCC
1 CCC-TCCCC-CCCCTCCCCCCCCACTCC-CCTCC
127549 CCC
1 CCC
127552 CATCAAAAAT
Statistics
Matches: 123, Mismatches: 20, Indels: 36
0.69 0.11 0.20
Matches are distributed among these distances:
29 18 0.15
30 14 0.11
31 35 0.28
32 15 0.12
33 15 0.12
34 11 0.09
35 4 0.03
36 11 0.09
ACGTcount: A:0.05, C:0.78, G:0.02, T:0.16
Consensus pattern (31 bp):
CCCTCCCCCCCCTCCCCCCCCACTCCCCTCC
Found at i:127410 original size:16 final size:15
Alignment explanation
Indices: 127358--127542 Score: 80
Period size: 15 Copynumber: 11.8 Consensus size: 15
127348 CCTCTCAAAT
127358 CCCTCCCCC-CCCTCC
1 CCCTCCCCCTCCC-CC
* *
127373 CCCACCCACTCCCCTTCC
1 CCCTCCCCCT-CCC--CC
127391 CCCTCCCCCTTCCCCC
1 CCCTCCCCC-TCCCCC
*
127407 CCCTCTCCTCCTCACCC
1 CCCTC-CC-CCTCCCCC
127424 CCC-CCCCCTCACACCC
1 CCCTCCCCCTC-C-CCC
*
127440 CCC-CCCACTTCCCTCC
1 CCCTCCC-CCTCCC-CC
127456 CCCTCCCCCATCCTCCC
1 CCCTCCCCC-TCC-CCC
127473 CCC-CGCCCC-CCTCCC
1 CCCTC-CCCCTCC-CCC
* **
127488 TCCTGGTCCCT-CCCC
1 CCCT-CCCCCTCCCCC
*
127503 CCCTCCTCC-CCCCC
1 CCCTCCCCCTCCCCC
*
127517 CCAT-CCCCTCCCCC
1 CCCTCCCCCTCCCCC
*
127531 CCCCCCCCCTCC
1 CCCTCCCCCTCC
127543 ATCTCCCCCC
Statistics
Matches: 131, Mismatches: 19, Indels: 40
0.69 0.10 0.21
Matches are distributed among these distances:
13 3 0.02
14 20 0.15
15 31 0.24
16 29 0.22
17 31 0.24
18 16 0.12
19 1 0.01
ACGTcount: A:0.04, C:0.78, G:0.02, T:0.16
Consensus pattern (15 bp):
CCCTCCCCCTCCCCC
Found at i:127485 original size:15 final size:14
Alignment explanation
Indices: 127362--127538 Score: 95
Period size: 16 Copynumber: 11.6 Consensus size: 14
127352 TCAAATCCCT
127362 CCCCCCCCTCCCCC
1 CCCCCCCCTCCCCC
*
127376 ACCCACTCCCCTTCCCC
1 -CCC-C-CCCCTCCCCC
* *
127393 CTCCCCCTTCCCCC
1 CCCCCCCCTCCCCC
*
127407 CCCTCTCCTCCTCACCC
1 CCC-C-CC-CCTCCCCC
127424 CCCCCCCCTCACACCC
1 CCCCCCCCTC-C-CCC
*
127440 CCCCCCACTTCCCTCC
1 CCCCCC-CCTCCC-CC
127456 CCCTCCCCCATCCTCCC
1 CCC-CCCCC-TCC-CCC
* *
127473 CCCCGCCC-CCCTC
1 CCCCCCCCTCCCCC
* ***
127486 CCTCCTGGTCCCTCC
1 CCCCCCCCTCCC-CC
*
127501 CCCCCTCCTCCCCC
1 CCCCCCCCTCCCCC
127515 CCCCATCCCCTCCCCC
1 CCCC--CCCCTCCCCC
127531 CCCCCCCC
1 CCCCCCCC
127539 CTCCATCTCC
Statistics
Matches: 124, Mismatches: 22, Indels: 33
0.69 0.12 0.18
Matches are distributed among these distances:
13 5 0.04
14 29 0.23
15 18 0.15
16 39 0.31
17 32 0.26
18 1 0.01
ACGTcount: A:0.05, C:0.79, G:0.02, T:0.15
Consensus pattern (14 bp):
CCCCCCCCTCCCCC
Found at i:127528 original size:72 final size:70
Alignment explanation
Indices: 127366--127539 Score: 178
Period size: 73 Copynumber: 2.5 Consensus size: 70
127356 ATCCCTCCCC
* **
127366 CCCCTCCCCCA-CCCACTCCCCTTCCCCCTCCCCCTTCCCCCCCCTCTCCTCCTCACCCCCCCCC
1 CCCC-CCCCCATCCC-CTCCCCCTCCCCCTCCCCCCCCCCCCCCCTCTCCTCCTCACCCCCCCCC
127430 CCTCACA
64 CCTCACA
* ** *
127437 CCCCCCCCCACTTCCCTCCCCCTCCCCCATCCTCCCCCCCGCCCCCCTC-CCTCCTGGTCCCTCC
1 CCCCCCCCCA-TCCCCTCCCCCTCCCCC-TCC-CCCCCCC-CCCCCCTCTCCTCCT-CACCCCCC
*
127501 CCCCCTC-CT
61 CCCCCTCACA
127510 CCCCCCCCCATCCCCTCCCCC-CCCCC-CCCC
1 CCCCCCCCCATCCCCTCCCCCTCCCCCTCCCC
127540 TCCATCTCCC
Statistics
Matches: 88, Mismatches: 9, Indels: 15
0.79 0.08 0.13
Matches are distributed among these distances:
68 2 0.02
69 2 0.02
70 6 0.07
71 21 0.24
72 15 0.17
73 22 0.25
74 20 0.23
ACGTcount: A:0.05, C:0.78, G:0.02, T:0.16
Consensus pattern (70 bp):
CCCCCCCCCATCCCCTCCCCCTCCCCCTCCCCCCCCCCCCCCCTCTCCTCCTCACCCCCCCCCCC
TCACA
Found at i:127533 original size:18 final size:17
Alignment explanation
Indices: 127362--127536 Score: 85
Period size: 18 Copynumber: 10.2 Consensus size: 17
127352 TCAAATCCCT
*
127362 CCCC-CCCCTCCCCCAC
1 CCCCTCCCCTCCCCCCC
* *
127378 CCACTCCCCTTCCCCCTC
1 CCCCTCCCC-TCCCCCCC
* *
127396 CCCCT-TCC-CCCCCCT
1 CCCCTCCCCTCCCCCCC
* * *
127411 CTCCTCCTCACCCCCCC
1 CCCCTCCCCTCCCCCCC
* *
127428 CCCCT-CACACCCCCCC
1 CCCCTCCCCTCCCCCCC
* *
127444 CCACTTCCCTCCCCCTCC
1 CCCCTCCCCTCCCCC-CC
*
127462 CCCATCCTCC-CCCCCGCC
1 CCCCTCC-CCTCCCCC-CC
**
127480 CCCCT-CCCTCCTGGTCCC
1 CCCCTCCCCTCC--CCCCC
*
127498 TCCC-CCCCTCCTCCCCC
1 CCCCTCCCCTCC-CCCCC
127515 CCCCATCCCCTCCCCCCC
1 CCCC-TCCCCTCCCCCCC
127533 CCCC
1 CCCC
127537 CCCTCCATCT
Statistics
Matches: 119, Mismatches: 27, Indels: 24
0.70 0.16 0.14
Matches are distributed among these distances:
15 9 0.08
16 20 0.17
17 32 0.27
18 48 0.40
19 10 0.08
ACGTcount: A:0.05, C:0.78, G:0.02, T:0.15
Consensus pattern (17 bp):
CCCCTCCCCTCCCCCCC
Found at i:127548 original size:21 final size:20
Alignment explanation
Indices: 127510--127552 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
127500 CCCCCCTCCT
127510 CCCCCCCCCATCCCCTCCCC
1 CCCCCCCCCATCCCCTCCCC
* *
127530 CCCCCCCCCCTCCATCTCCCC
1 CCCCCCCCCATCC-CCTCCCC
127551 CC
1 CC
127553 ATCAAAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.05, C:0.84, G:0.00, T:0.12
Consensus pattern (20 bp):
CCCCCCCCCATCCCCTCCCC
Found at i:127794 original size:18 final size:18
Alignment explanation
Indices: 127732--127795 Score: 60
Period size: 18 Copynumber: 3.6 Consensus size: 18
127722 ACAAATCAAT
* *
127732 AAAAATAGAATAAATCATC
1 AAAAATA-AAAAAATTATC
*
127751 -AAAACAAAAAAATTA-C
1 AAAAATAAAAAAATTATC
*
127767 ATAAATTAAAAAAATTATC
1 A-AAAATAAAAAAATTATC
127786 AAAAATAAAA
1 AAAAATAAAA
127796 TTATATTAAC
Statistics
Matches: 36, Mismatches: 6, Indels: 7
0.73 0.12 0.14
Matches are distributed among these distances:
16 1 0.03
17 7 0.19
18 26 0.72
19 2 0.06
ACGTcount: A:0.70, C:0.08, G:0.02, T:0.20
Consensus pattern (18 bp):
AAAAATAAAAAAATTATC
Found at i:127862 original size:17 final size:17
Alignment explanation
Indices: 127842--127966 Score: 66
Period size: 17 Copynumber: 7.4 Consensus size: 17
127832 CCAAAAGATC
127842 AAAATAATAACAAAAAA
1 AAAATAATAACAAAAAA
127859 AAAAT-ATCAACAAAAAA
1 AAAATAAT-AACAAAAAA
*
127876 TCAAAA-AA-AATAAAAACA
1 --AAAATAATAACAAAAA-A
* ** *
127894 ATAATAATAACACATCAT
1 AAAATAATAACA-AAAAA
*
127912 AAAA-AATCACAAATAAA
1 AAAATAATAACAAA-AAA
* *
127929 TAAA-AATAAAAAAAAA
1 AAAATAATAACAAAAAA
127945 AAAATAA-AA-AAAAAA
1 AAAATAATAACAAAAAA
127960 AACAATA
1 AA-AATA
127967 CATCAAAAGA
Statistics
Matches: 82, Mismatches: 15, Indels: 23
0.68 0.12 0.19
Matches are distributed among these distances:
15 8 0.10
16 18 0.22
17 42 0.51
18 7 0.09
19 7 0.09
ACGTcount: A:0.78, C:0.09, G:0.00, T:0.14
Consensus pattern (17 bp):
AAAATAATAACAAAAAA
Found at i:127864 original size:14 final size:14
Alignment explanation
Indices: 127842--127961 Score: 56
Period size: 13 Copynumber: 8.5 Consensus size: 14
127832 CCAAAAGATC
*
127842 AAAATAATAACAAA
1 AAAAAAATAACAAA
*
127856 AAAAAAATATC-AA
1 AAAAAAATAACAAA
*
127869 CAAAAAAT--C--A
1 AAAAAAATAACAAA
127879 AAAAAAATAA-AAA
1 AAAAAAATAACAAA
*
127892 CAATAATAATAACACATCA
1 -AA-AAAAATAACA-A--A
* *
127911 TAAAAAATCACAAATA
1 AAAAAAATAAC-AA-A
*
127927 AATAAAAATAAAAAA
1 AA-AAAAATAACAAA
127942 AAAAAAATAA-AAA
1 AAAAAAATAACAAA
127955 AAAAAAA
1 AAAAAAA
127962 CAATACATCA
Statistics
Matches: 82, Mismatches: 12, Indels: 25
0.69 0.10 0.21
Matches are distributed among these distances:
10 8 0.10
11 1 0.01
13 20 0.24
14 19 0.23
15 10 0.12
16 5 0.06
17 16 0.20
18 2 0.02
19 1 0.01
ACGTcount: A:0.78, C:0.08, G:0.00, T:0.13
Consensus pattern (14 bp):
AAAAAAATAACAAA
Found at i:127873 original size:11 final size:10
Alignment explanation
Indices: 127856--128000 Score: 65
Period size: 9 Copynumber: 14.3 Consensus size: 10
127846 TAATAACAAA
127856 AAAAAAATATC
1 AAAAAAA-ATC
127867 AACAAAAAATC
1 AA-AAAAAATC
127878 AAAAAAAAT-
1 AAAAAAAATC
*
127887 AAAAACAAT-
1 AAAAAAAATC
127896 AATAATAACACATC
1 AA-AA-AA-A-ATC
*
127910 ATAAAAAATC
1 AAAAAAAATC
*
127920 ACAAATAAAT-
1 A-AAAAAAATC
**
127930 AAAAATAAAAA
1 AAAAA-AAATC
127941 AAAAAAAAT-
1 AAAAAAAATC
127950 AAAAAAAA--
1 AAAAAAAATC
127958 AAAACAATACATC
1 AAAA-AA-A-ATC
*
127971 -AAAAGAATC
1 AAAAAAAATC
127980 -AAAAAAATC
1 AAAAAAAATC
*
127989 AAGAAAAA-C
1 AAAAAAAATC
127998 AAA
1 AAA
128001 GCAAAATATA
Statistics
Matches: 107, Mismatches: 12, Indels: 32
0.71 0.08 0.21
Matches are distributed among these distances:
8 4 0.04
9 37 0.35
10 28 0.26
11 22 0.21
12 11 0.10
13 4 0.04
14 1 0.01
ACGTcount: A:0.76, C:0.10, G:0.01, T:0.12
Consensus pattern (10 bp):
AAAAAAAATC
Found at i:127953 original size:13 final size:14
Alignment explanation
Indices: 127930--127961 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
127920 ACAAATAAAT
127930 AAAAATAAAAAAAA
1 AAAAATAAAAAAAA
127944 AAAAATAAAAAAAA
1 AAAAATAAAAAAAA
127958 AAAA
1 AAAA
127962 CAATACATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.94, C:0.00, G:0.00, T:0.06
Consensus pattern (14 bp):
AAAAATAAAAAAAA
Found at i:127957 original size:16 final size:16
Alignment explanation
Indices: 127936--127966 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
127926 AAATAAAAAT
127936 AAAAAAAAAAAAATAA
1 AAAAAAAAAAAAATAA
*
127952 AAAAAAAAAACAATA
1 AAAAAAAAAAAAATA
127967 CATCAAAAGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.90, C:0.03, G:0.00, T:0.06
Consensus pattern (16 bp):
AAAAAAAAAAAAATAA
Found at i:128038 original size:24 final size:20
Alignment explanation
Indices: 128003--128049 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 20
127993 AAAACAAAGC
128003 AAAATATAACATCAAATATAAA
1 AAAATATAACATC-AATA-AAA
128025 AAAATCATCAACATCAATAAAA
1 AAAAT-AT-AACATCAATAAAA
128047 AAA
1 AAA
128050 CAATAAATAC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 11 0.48
23 6 0.26
24 6 0.26
ACGTcount: A:0.68, C:0.13, G:0.00, T:0.19
Consensus pattern (20 bp):
AAAATATAACATCAATAAAA
Found at i:128048 original size:23 final size:22
Alignment explanation
Indices: 128003--128054 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 22
127993 AAAACAAAGC
*
128003 AAAATATAACATCAAATATAAA
1 AAAATATAACATCAAATAAAAA
128025 AAAATCATCAACATC-AATAAAAA
1 AAAAT-AT-AACATCAAATAAAAA
128048 AACAATA
1 AA-AATA
128055 AATACAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
22 5 0.19
23 12 0.46
24 9 0.35
ACGTcount: A:0.67, C:0.13, G:0.00, T:0.19
Consensus pattern (22 bp):
AAAATATAACATCAAATAAAAA
Found at i:128275 original size:17 final size:16
Alignment explanation
Indices: 128255--128288 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
128245 AAAAAAGGAC
*
128255 ATCACAAAAATAAAAAT
1 ATCA-AAAAACAAAAAT
128272 ATCAAAAAACAAAAAT
1 ATCAAAAAACAAAAAT
128288 A
1 A
128289 AAATAATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.74, C:0.12, G:0.00, T:0.15
Consensus pattern (16 bp):
ATCAAAAAACAAAAAT
Found at i:128311 original size:33 final size:33
Alignment explanation
Indices: 128269--128332 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
128259 CAAAAATAAA
* *
128269 AATATCAAAA-AACAAAAATAAAATAATAAAAAC
1 AATATCAAAATAA-AAAAAAAAAATAACAAAAAC
128302 AATATCAAAATAAAAAAAAAAAATAACAAAA
1 AATATCAAAATAAAAAAAAAAAATAACAAAA
128333 TAAAAATCAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 26 0.93
34 2 0.07
ACGTcount: A:0.78, C:0.08, G:0.00, T:0.14
Consensus pattern (33 bp):
AATATCAAAATAAAAAAAAAAAATAACAAAAAC
Found at i:128318 original size:27 final size:29
Alignment explanation
Indices: 128285--128354 Score: 76
Period size: 27 Copynumber: 2.5 Consensus size: 29
128275 AAAAAACAAA
* *
128285 AATAAAATAATAAAAACAATATCAAAAT-
1 AATAAAATAATAAAAACAAAATAAAAATC
*
128313 AA-AAAA-AAAAAATAACAAAATAAAAATC
1 AATAAAATAATAAA-AACAAAATAAAAATC
128341 AATAAAAT-ATAAAA
1 AATAAAATAATAAAA
128355 TACATCAATA
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
26 5 0.15
27 16 0.47
28 5 0.15
29 8 0.24
ACGTcount: A:0.77, C:0.06, G:0.00, T:0.17
Consensus pattern (29 bp):
AATAAAATAATAAAAACAAAATAAAAATC
Found at i:128331 original size:21 final size:21
Alignment explanation
Indices: 128275--128338 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
128265 TAAAAATATC
* *
128275 AAAAAACAAA-AATAAAAT-A
1 AAAAAAAAAATAACAAAATAA
* * *
128294 ATAAAAACAATATCAAAATAA
1 AAAAAAAAAATAACAAAATAA
128315 AAAAAAAAAATAACAAAATAA
1 AAAAAAAAAATAACAAAATAA
128336 AAA
1 AAA
128339 TCAATAAAAT
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
19 7 0.20
20 6 0.17
21 22 0.63
ACGTcount: A:0.81, C:0.06, G:0.00, T:0.12
Consensus pattern (21 bp):
AAAAAAAAAATAACAAAATAA
Found at i:128342 original size:33 final size:33
Alignment explanation
Indices: 128261--128347 Score: 88
Period size: 33 Copynumber: 2.5 Consensus size: 33
128251 GGACATCACA
* *
128261 AAAATAAAAATATCAAAAAACAAAAATAAAATAAT
1 AAAAT-AAAA-ATCAAAAAACAAAAAAAAAATAAC
*
128296 AAAA-ACAATATCAAAATAA-AAAAAAAAAATAAC
1 AAAATA-AAAATCAAAA-AACAAAAAAAAAATAAC
128329 AAAATAAAAATCAATAAAA
1 AAAATAAAAATCAA-AAAA
128348 TATAAAATAC
Statistics
Matches: 44, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
33 33 0.75
34 7 0.16
35 4 0.09
ACGTcount: A:0.78, C:0.07, G:0.00, T:0.15
Consensus pattern (33 bp):
AAAATAAAAATCAAAAAACAAAAAAAAAATAAC
Found at i:128353 original size:38 final size:37
Alignment explanation
Indices: 128267--128354 Score: 108
Period size: 38 Copynumber: 2.3 Consensus size: 37
128257 CACAAAAATA
*
128267 AAAATATCAAAAAACAAAAATAAAATAATAAAAACAAT
1 AAAATAT-AAAAAAAAAAAATAAAATAATAAAAACAAT
128305 ATCAAA-ATAAAAAAAAAAAATAACAA-AATAAAAATCAAT
1 A--AAATATAAAAAAAAAAAATAA-AATAATAAAAA-CAAT
128344 AAAATATAAAA
1 AAAATATAAAA
128355 TACATCAATA
Statistics
Matches: 44, Mismatches: 1, Indels: 10
0.80 0.02 0.18
Matches are distributed among these distances:
37 3 0.07
38 29 0.66
39 9 0.20
40 3 0.07
ACGTcount: A:0.77, C:0.07, G:0.00, T:0.16
Consensus pattern (37 bp):
AAAATATAAAAAAAAAAAATAAAATAATAAAAACAAT
Found at i:128419 original size:16 final size:16
Alignment explanation
Indices: 128400--128430 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
128390 CATAAACATC
128400 AAAAACAAAAAAAAAA
1 AAAAACAAAAAAAAAA
*
128416 AAAAAGAAAAAAAAA
1 AAAAACAAAAAAAAA
128431 TAATTTAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.94, C:0.03, G:0.03, T:0.00
Consensus pattern (16 bp):
AAAAACAAAAAAAAAA
Found at i:128776 original size:15 final size:16
Alignment explanation
Indices: 128756--128787 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
128746 AATACCGCAC
128756 ATATAT-ATAAAAAAA
1 ATATATAATAAAAAAA
128771 ATATATAATAAAAAAA
1 ATATATAATAAAAAAA
128787 A
1 A
128788 AAATACCCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (16 bp):
ATATATAATAAAAAAA
Found at i:129293 original size:14 final size:14
Alignment explanation
Indices: 129273--129315 Score: 59
Period size: 14 Copynumber: 3.0 Consensus size: 14
129263 CCAAAAATAA
129273 ACAAAAAAAAACAT
1 ACAAAAAAAAACAT
* *
129287 ACCAAAATAAAACAA
1 A-CAAAAAAAAACAT
129302 ACAAAAAAAAACAT
1 ACAAAAAAAAACAT
129316 CAACATCAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
14 12 0.50
15 12 0.50
ACGTcount: A:0.77, C:0.16, G:0.00, T:0.07
Consensus pattern (14 bp):
ACAAAAAAAAACAT
Found at i:129331 original size:30 final size:28
Alignment explanation
Indices: 129271--129334 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 28
129261 AACCAAAAAT
*
129271 AAACAAAAAAAAACATACCAAAATAAAAC
1 AAACAAAAAAAAACATAACAAAAT-AAAC
129300 AAACAAAAAAAAACATCAACATCAAAT-AAC
1 AAACAAAAAAAAACAT-AACA--AAATAAAC
129330 AAACA
1 AAACA
129335 CCTAATAACC
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
29 16 0.52
30 11 0.35
32 4 0.13
ACGTcount: A:0.73, C:0.19, G:0.00, T:0.08
Consensus pattern (28 bp):
AAACAAAAAAAAACATAACAAAATAAAC
Found at i:129931 original size:23 final size:23
Alignment explanation
Indices: 129905--129966 Score: 70
Period size: 23 Copynumber: 2.7 Consensus size: 23
129895 ACAGATAAAA
* * *
129905 ACAATAAAATAATAAACATAACC
1 ACAATAAAAAAAAAAACACAACC
* *
129928 ACAAGAAAAAAAAAAACACAATC
1 ACAATAAAAAAAAAAACACAACC
*
129951 ACAATAAACAAAAAAA
1 ACAATAAAAAAAAAAA
129967 TAAAATAAAT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.73, C:0.16, G:0.02, T:0.10
Consensus pattern (23 bp):
ACAATAAAAAAAAAAACACAACC
Found at i:129982 original size:17 final size:17
Alignment explanation
Indices: 129962--130090 Score: 67
Period size: 17 Copynumber: 7.8 Consensus size: 17
129952 CAATAAACAA
*
129962 AAAAATAAAATAAATAT
1 AAAAATAAAACAAATAT
*
129979 AAAAATCAAAC-AA-AT
1 AAAAATAAAACAAATAT
* *
129994 -AAATTAAATAGAAA-AT
1 AAAAATAAA-ACAAATAT
* *
130010 AAAATTAAAAACATATAT
1 AAAAAT-AAAACAAATAT
* *
130028 ATAAAT-AAACCAA-AT
1 AAAAATAAAACAAATAT
*
130043 AAACATACAAACAAA-AT
1 AAAAATA-AAACAAATAT
*
130060 ATAAATAAAACAAATA-
1 AAAAATAAAACAAATAT
130076 AAAACATACAAACAA
1 AAAA-ATA-AAACAA
130091 TAATACATGA
Statistics
Matches: 85, Mismatches: 17, Indels: 19
0.70 0.14 0.16
Matches are distributed among these distances:
14 6 0.07
15 9 0.11
16 21 0.25
17 34 0.40
18 15 0.18
ACGTcount: A:0.71, C:0.09, G:0.01, T:0.19
Consensus pattern (17 bp):
AAAAATAAAACAAATAT
Found at i:129988 original size:26 final size:26
Alignment explanation
Indices: 129959--130008 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
129949 TCACAATAAA
*
129959 CAAAAAAATAAAATAAATATAAAAAT
1 CAAAAAAATAAAATAAATAGAAAAAT
* *
129985 CAAACAAATAAATTAAATAGAAAA
1 CAAAAAAATAAAATAAATAGAAAA
130009 TAAAATTAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.74, C:0.06, G:0.02, T:0.18
Consensus pattern (26 bp):
CAAAAAAATAAAATAAATAGAAAAAT
Found at i:129992 original size:30 final size:31
Alignment explanation
Indices: 129956--130013 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
129946 CAATCACAAT
*
129956 AAACAAAAAAATAAAATA-AATATAAAAATC
1 AAACAAAAAAATAAAATAGAAAATAAAAATC
* *
129986 AAACAAATAAATTAAATAGAAAATAAAA
1 AAACAAAAAAATAAAATAGAAAATAAAA
130014 TTAAAAACAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 16 0.67
31 8 0.33
ACGTcount: A:0.76, C:0.05, G:0.02, T:0.17
Consensus pattern (31 bp):
AAACAAAAAAATAAAATAGAAAATAAAAATC
Found at i:130067 original size:32 final size:34
Alignment explanation
Indices: 129964--130095 Score: 109
Period size: 32 Copynumber: 4.0 Consensus size: 34
129954 ATAAACAAAA
* *
129964 AAATAAAATAAATATAAAAAT-CAAACAAATAA-ATT
1 AAATAAAACAAATA-AAACATACAAAC-AATAATA-T
* * *
129999 AAAT-AGA-AAATAAAA-TTAAAAAC-ATATATAT
1 AAATAAAACAAATAAAACATACAAACAATA-ATAT
*
130030 AAATAAACCAAAT-AAACATACAAACAA-AATAT
1 AAATAAAACAAATAAAACATACAAACAATAATAT
130062 AAATAAAACAAATAAAAACATACAAACAATAATA
1 AAATAAAACAAAT-AAAACATACAAACAATAATA
130096 CATGAAAAAA
Statistics
Matches: 79, Mismatches: 8, Indels: 20
0.74 0.07 0.19
Matches are distributed among these distances:
30 3 0.04
31 7 0.09
32 28 0.35
33 16 0.20
34 17 0.22
35 8 0.10
ACGTcount: A:0.70, C:0.09, G:0.01, T:0.20
Consensus pattern (34 bp):
AAATAAAACAAATAAAACATACAAACAATAATAT
Found at i:130095 original size:20 final size:19
Alignment explanation
Indices: 130043--130095 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 19
130033 TAAACCAAAT
130043 AAACATACAAACAAAAT-A
1 AAACATACAAACAAAATAA
*
130061 TAA-ATA-AAAC-AAATAA
1 AAACATACAAACAAAATAA
130077 AAACATACAAACAATAATA
1 AAACATACAAACAA-AATA
130096 CATGAAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
15 4 0.14
16 7 0.25
17 6 0.21
18 6 0.21
19 1 0.04
20 4 0.14
ACGTcount: A:0.72, C:0.13, G:0.00, T:0.15
Consensus pattern (19 bp):
AAACATACAAACAAAATAA
Found at i:130139 original size:14 final size:15
Alignment explanation
Indices: 130109--130145 Score: 58
Period size: 14 Copynumber: 2.5 Consensus size: 15
130099 GAAAAAAATC
130109 AATAACAAAAAATAAA
1 AATAAC-AAAAATAAA
130125 AATAACAAAAA-AAA
1 AATAACAAAAATAAA
130139 AATAACA
1 AATAACA
130146 TCAGAAATTG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 10 0.48
15 5 0.24
16 6 0.29
ACGTcount: A:0.81, C:0.08, G:0.00, T:0.11
Consensus pattern (15 bp):
AATAACAAAAATAAA
Found at i:130593 original size:15 final size:16
Alignment explanation
Indices: 130575--130606 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
130565 AAACACAAAC
130575 ACAAA-AAAAAAAAAA
1 ACAAACAAAAAAAAAA
130590 ACAAACAAAAAAAAAA
1 ACAAACAAAAAAAAAA
130606 A
1 A
130607 AAATTAACCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.91, C:0.09, G:0.00, T:0.00
Consensus pattern (16 bp):
ACAAACAAAAAAAAAA
Found at i:130593 original size:21 final size:20
Alignment explanation
Indices: 130564--130609 Score: 74
Period size: 20 Copynumber: 2.2 Consensus size: 20
130554 CACAATCACC
*
130564 AAAACACAAACACAAAAAAAA
1 AAAAAACAAACA-AAAAAAAA
130585 AAAAAACAAACAAAAAAAAA
1 AAAAAACAAACAAAAAAAAA
130605 AAAAA
1 AAAAA
130610 TTAACCCGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 13 0.54
21 11 0.46
ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00
Consensus pattern (20 bp):
AAAAAACAAACAAAAAAAAA
Done.