Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2752
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 500988
ACGTcount: A:0.21, C:0.11, G:0.11, T:0.21
Warning! 175871 characters in sequence are not A, C, G, or T
File 3 of 3
Found at i:468551 original size:22 final size:22
Alignment explanation
Indices: 468500--468551 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 22
468490 ATTATTTTTA
*
468500 CTTG-AAAACATTTTATTTAATG
1 CTTGAAAAACATTTTACTTAA-G
468522 CTTGAAAAACATTTATACTTAA-
1 CTTGAAAAACATTT-TACTTAAG
*
468544 CTTTAAAA
1 CTTGAAAA
468552 CATCTTTGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
22 11 0.42
23 9 0.35
24 6 0.23
ACGTcount: A:0.42, C:0.12, G:0.06, T:0.40
Consensus pattern (22 bp):
CTTGAAAAACATTTTACTTAAG
Found at i:469298 original size:19 final size:18
Alignment explanation
Indices: 469268--469314 Score: 76
Period size: 19 Copynumber: 2.6 Consensus size: 18
469258 AATAGTAAGA
469268 CAAACAAATTTCATTCAT
1 CAAACAAATTTCATTCAT
469286 CAAACATAATTTCATTCAT
1 CAAACA-AATTTCATTCAT
*
469305 CAAAGAAATT
1 CAAACAAATT
469315 CATGTACAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
18 10 0.37
19 17 0.63
ACGTcount: A:0.47, C:0.19, G:0.02, T:0.32
Consensus pattern (18 bp):
CAAACAAATTTCATTCAT
Found at i:471724 original size:20 final size:19
Alignment explanation
Indices: 471675--471753 Score: 68
Period size: 20 Copynumber: 3.9 Consensus size: 19
471665 TTTTACCCAG
* *
471675 ATGTATCGATACATTTTTCAA
1 ATGTATCGATACA-TTAT-GA
*
471696 ATATATCGATACATGTATGA
1 ATGTATCGATACAT-TATGA
* * *
471716 ATGTATCGATATATTCTTCA
1 ATGTATCGATACATT-ATGA
471736 ATGTATCGATACATTATG
1 ATGTATCGATACATTATG
471754 TCTTTTTACC
Statistics
Matches: 46, Mismatches: 10, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
19 2 0.04
20 30 0.65
21 14 0.30
ACGTcount: A:0.34, C:0.13, G:0.13, T:0.41
Consensus pattern (19 bp):
ATGTATCGATACATTATGA
Found at i:471736 original size:41 final size:39
Alignment explanation
Indices: 471675--471753 Score: 113
Period size: 41 Copynumber: 2.0 Consensus size: 39
471665 TTTTACCCAG
*
471675 ATGTATCGATACATTTTTCAAATATATCGATACATGTATGA
1 ATGTATCGATACATTCTTC-AATATATCGATACAT-TATGA
* *
471716 ATGTATCGATATATTCTTCAATGTATCGATACATTATG
1 ATGTATCGATACATTCTTCAATATATCGATACATTATG
471754 TCTTTTTACC
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
39 4 0.11
40 14 0.40
41 17 0.49
ACGTcount: A:0.34, C:0.13, G:0.13, T:0.41
Consensus pattern (39 bp):
ATGTATCGATACATTCTTCAATATATCGATACATTATGA
Found at i:473340 original size:13 final size:13
Alignment explanation
Indices: 473322--473346 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
473312 ACACAAAGTA
473322 TGTATCGATACAT
1 TGTATCGATACAT
473335 TGTATCGATACA
1 TGTATCGATACA
473347 CAAAAAATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:473343 original size:32 final size:33
Alignment explanation
Indices: 473302--473369 Score: 111
Period size: 32 Copynumber: 2.1 Consensus size: 33
473292 GTAGCCAAAC
**
473302 TTGTATCGATACACAAAGTA-TGTATCGATACA
1 TTGTATCGATACACAAAAAATTGTATCGATACA
473334 TTGTATCGATACACAAAAAATTGTATCGATACA
1 TTGTATCGATACACAAAAAATTGTATCGATACA
473367 TTG
1 TTG
473370 GCTTGCAACG
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
32 18 0.55
33 15 0.45
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (33 bp):
TTGTATCGATACACAAAAAATTGTATCGATACA
Found at i:474053 original size:16 final size:16
Alignment explanation
Indices: 474020--474049 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
474010 CCCTAATCTC
474020 TTTTCATTTCAAATTG
1 TTTTCATTTCAAATTG
474036 TTTTC-TTTCAAATT
1 TTTTCATTTCAAATT
474050 TGTTCAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.23, C:0.13, G:0.03, T:0.60
Consensus pattern (16 bp):
TTTTCATTTCAAATTG
Found at i:475610 original size:21 final size:21
Alignment explanation
Indices: 475577--475626 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
475567 TTGCAAGTTG
*
475577 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
475599 AAATAATG-AGTTAGCTAAGAA
1 AAATAAAGAAGTTAGCTAAG-A
475620 AAATAAA
1 AAATAAA
475627 AACTTGCATA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 16 0.67
22 7 0.29
ACGTcount: A:0.56, C:0.04, G:0.18, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:477444 original size:15 final size:15
Alignment explanation
Indices: 477424--477454 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
477414 TAAAAATTTC
*
477424 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
477439 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
477454 C
1 C
477455 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:479552 original size:13 final size:13
Alignment explanation
Indices: 479534--479571 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
479524 CATTTTTCTT
479534 TGTATCGATACAA
1 TGTATCGATACAA
* *
479547 TGTATCAATACAC
1 TGTATCGATACAA
479560 TGTATCGATACA
1 TGTATCGATACA
479572 GGGGGATTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:479726 original size:20 final size:20
Alignment explanation
Indices: 479683--479728 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
479673 AAATCTTTTG
479683 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
479704 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
479724 CAAAA
1 CAAAA
479729 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:481473 original size:39 final size:40
Alignment explanation
Indices: 481406--481496 Score: 105
Period size: 39 Copynumber: 2.3 Consensus size: 40
481396 GGGAGATTTT
* * *
481406 TTTAGTAAAAGGGGAGAATGCATAAATTTGCTAAAATTA-
1 TTTAGTTAAGGGGGAGAATGCACAAATTTGCTAAAATTAC
* * *
481445 TCTTA-TTAAGGGGGAGAATGTACGAATTTGTTAAAATTAC
1 T-TTAGTTAAGGGGGAGAATGCACAAATTTGCTAAAATTAC
481485 TTTAGTTAAGGG
1 TTTAGTTAAGGG
481497 AGAAAGAAAA
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
39 32 0.74
40 11 0.26
ACGTcount: A:0.37, C:0.05, G:0.23, T:0.34
Consensus pattern (40 bp):
TTTAGTTAAGGGGGAGAATGCACAAATTTGCTAAAATTAC
Found at i:482167 original size:20 final size:20
Alignment explanation
Indices: 482122--482173 Score: 79
Period size: 19 Copynumber: 2.6 Consensus size: 20
482112 GTAGCCAAAC
**
482122 TTGTATCGATACACAAAGTA
1 TTGTATCGATACACAAAAAA
482142 -TGTATCGATACACAAAAAA
1 TTGTATCGATACACAAAAAA
482161 TTGTATCGATACA
1 TTGTATCGATACA
482174 TTGGCTTGCA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 17 0.59
20 12 0.41
ACGTcount: A:0.42, C:0.15, G:0.13, T:0.29
Consensus pattern (20 bp):
TTGTATCGATACACAAAAAA
Found at i:495744 original size:9 final size:9
Alignment explanation
Indices: 495730--495789 Score: 61
Period size: 9 Copynumber: 6.8 Consensus size: 9
495720 CTTTACAACA
495730 AAAAAAAAC
1 AAAAAAAAC
495739 AAAAAAAAAC
1 -AAAAAAAAC
495749 AAAAAAAAC
1 AAAAAAAAC
*
495758 AAAACAAA-
1 AAAAAAAAC
*
495766 AAAAAAGA-
1 AAAAAAAAC
* *
495774 AAAAATAGC
1 AAAAAAAAC
495783 AAAAAAA
1 AAAAAAA
495790 TAGAAAGGTC
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
8 11 0.26
9 22 0.52
10 9 0.21
ACGTcount: A:0.87, C:0.08, G:0.03, T:0.02
Consensus pattern (9 bp):
AAAAAAAAC
Found at i:495756 original size:24 final size:24
Alignment explanation
Indices: 495729--495778 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
495719 CCTTTACAAC
495729 AAAAAAAAACAAAAAAAAACAAAA
1 AAAAAAAAACAAAAAAAAACAAAA
* *
495753 AAAACAAAACAAAAAAAAAGAAAA
1 AAAAAAAAACAAAAAAAAACAAAA
495777 AA
1 AA
495779 TAGCAAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.90, C:0.08, G:0.02, T:0.00
Consensus pattern (24 bp):
AAAAAAAAACAAAAAAAAACAAAA
Found at i:495778 original size:10 final size:10
Alignment explanation
Indices: 495726--495777 Score: 72
Period size: 10 Copynumber: 5.2 Consensus size: 10
495716 CGTCCTTTAC
495726 AACAAAAAAA
1 AACAAAAAAA
495736 AACAAAAAAA
1 AACAAAAAAA
495746 AAC-AAAAAA
1 AACAAAAAAA
495755 AACAAAACAAA
1 AACAAAA-AAA
495766 AA-AAAAGAAA
1 AACAAAA-AAA
495776 AA
1 AA
495778 ATAGCAAAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
9 9 0.23
10 25 0.64
11 5 0.13
ACGTcount: A:0.88, C:0.10, G:0.02, T:0.00
Consensus pattern (10 bp):
AACAAAAAAA
Found at i:495789 original size:1 final size:1
Alignment explanation
Indices: 495729--495778 Score: 55
Period size: 1 Copynumber: 50.0 Consensus size: 1
495719 CCTTTACAAC
* * * * *
495729 AAAAAAAAACAAAAAAAAACAAAAAAAACAAAACAAAAAAAAAGAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
495779 TAGCAAAAAA
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
1 39 1.00
ACGTcount: A:0.90, C:0.08, G:0.02, T:0.00
Consensus pattern (1 bp):
A
Found at i:497050 original size:28 final size:28
Alignment explanation
Indices: 497010--498478 Score: 1478
Period size: 29 Copynumber: 50.2 Consensus size: 28
497000 GAACGTTTAA
497010 ACCCTTTCAAAGCCCACAAGTCAGTGGC
1 ACCCTTTCAAAGCCCACAAGTCAGTGGC
497038 ACCCTTTCAAAGCCCACAAGTCAGTGGC
1 ACCCTTTCAAAGCCCACAAGTCAGTGGC
* *
497066 ACCCTTTCAAAGCCCACAAGTCAGGGGT
1 ACCCTTTCAAAGCCCACAAGTCAGTGGC
*
497094 ACCCTTTCAAAGCCCATAAGTCAGTGGC
1 ACCCTTTCAAAGCCCACAAGTCAGTGGC
497122 ACCCCTTTCAAAGCCCACGCAAGTCAGTGGC
1 A-CCCTTTCAAAGCCCA--CAAGTCAGTGGC
*
497153 ACCCTTTTAAAGCCCACAAGTCAGTGGC
1 ACCCTTTCAAAGCCCACAAGTCAGTGGC
*
497181 ACTCTTTTCAAAGCCCACAAGAT-AGTGGC
1 AC-CCTTTCAAAGCCCACAAG-TCAGTGGC
497210 ACCCCTTTCAAAGCCCACAAGTCAGTGGC
1 A-CCCTTTCAAAGCCCACAAGTCAGTGGC
*
497239 ACCCTTTTAAAGCCCACAAGTCAGTGGC
1 ACCCTTTCAAAGCCCACAAGTCAGTGGC
* * * **
497267 ATTCTTTTCAAAGCCCTCAAAACAGTGGC
1 A-CCCTTTCAAAGCCCACAAGTCAGTGGC
*
497296 ACCCCTTTCAAAGCCCACAAGTTAGTGGC
1 A-CCCTTTCAAAGCCCACAAGTCAGTGGC
* *
497325 ACCCTTTCAAAGCCCACAAGCCAATGGC
1 ACCCTTTCAAAGCCCACAAGTCAGTGGC
* *
497353 ACCTTTTCAAAGCCCACAAGTTAGTGGC
1 ACCCTTTCAAAGCCCACAAGTCAGTGGC
* *
497381 ACTCTTTTTAAAGCCCACAAGTCAGTGGC
1 AC-CCTTTCAAAGCCCACAAGTCAGTGGC
* *
497410 ACCCTTTTCAAAGCCTACACGAGTCGGTGGC
1 ACCC-TTTCAAAGCC--CACAAGTCAGTGGC
*
497441 AACTCTTTCCAAAGCCCACAAGTCAGTGGC
1 -ACCCTTT-CAAAGCCCACAAGTCAGTGGC
** * *
497471 ACTATTTTCAAAGCCCACACGAGCCCGTGGC
1 AC-CCTTTCAAAGCCCACA--AGTCAGTGGC
*
497502 AACTCTTTTCAAAGCCCACAAGTCAGTGGC
1 -AC-CCTTTCAAAGCCCACAAGTCAGTGGC
*
497532 ACCCCTTTCAAAGCCCACGCAAGTTAGTGGC
1 A-CCCTTTCAAAGCCCA--CAAGTCAGTGGC
* * *
497563 ACCCTTTTAAAGCCCATAAGTTAGTGGC
1 ACCCTTTCAAAGCCCACAAGTCAGTGGC
* *
497591 ACTCTTTACAAAGCCCACAAGACAGTGGC
1 ACCCTTT-CAAAGCCCACAAGTCAGTGGC
* *
497620 ACCCCTTTCAAAGCCCATAAGTTAGTGGC
1 A-CCCTTTCAAAGCCCACAAGTCAGTGGC
*
497649 ACCCCTTTTAAAGCCCACAAGTCAGTGGC
1 A-CCCTTTCAAAGCCCACAAGTCAGTGGC
** *
497678 ACTATTTTCAAAGCCCACAAGACAGTGGC
1 AC-CCTTTCAAAGCCCACAAGTCAGTGGC
*
497707 ACCCCTTTCAAAGCCTACAAGTCAGTGGC
1 A-CCCTTTCAAAGCCCACAAGTCAGTGGC
* *
497736 ACCCTTTCAAAGCCTACAAGTTAGTGGC
1 ACCCTTTCAAAGCCCACAAGTCAGTGGC
* *
497764 ACTCTTTTCAAAGCCCACACGAGTCGGTGGC
1 AC-CCTTTCAAAGCCCACA--AGTCAGTGGC
** *
497795 AACTATTTTCAAAGCCCACAAGTCAGTGAC
1 -AC-CCTTTCAAAGCCCACAAGTCAGTGGC
*
497825 ACCCCTTTAAAAGCCCACGCAAGTCAGTGGC
1 A-CCCTTTCAAAGCCCA--CAAGTCAGTGGC
* * *
497856 ACCTTTTTAAAGCCCACAAGTTAGTGGC
1 ACCCTTTCAAAGCCCACAAGTCAGTGGC
* *
497884 ACTCTTTTTAAAGCCCACAAGAT-AGTGGC
1 AC-CCTTTCAAAGCCCACAAG-TCAGTGGC
*
497913 ACCCCTTTCAAAGCCCACAACTCAGTGGC
1 A-CCCTTTCAAAGCCCACAAGTCAGTGGC
497942 ATCCCTTTCAAAG-CCACAAGTCAGTGGC
1 A-CCCTTTCAAAGCCCACAAGTCAGTGGC
* *
497970 ACCTTTTCAAAACCCACAAGTCAGTGGC
1 ACCCTTTCAAAGCCCACAAGTCAGTGGC
* * *
497998 ACTCTTTTCGAAGCCCACAAGTCAGTGGT
1 AC-CCTTTCAAAGCCCACAAGTCAGTGGC
*
498027 ACTCTTTTCAAAGCCCACACGAGTC-GATGGC
1 AC-CCTTTCAAAGCCCACA--AGTCAG-TGGC
*
498058 AACTCTTTTCAAA-CCCACAAGTCAGTGGC
1 -AC-CCTTTCAAAGCCCACAAGTCAGTGGC
498087 ACCCCTTTCAAAGCCCACGCAAGTCAGTGGC
1 A-CCCTTTCAAAGCCCA--CAAGTCAGTGGC
* *
498118 ACCCTTTTAAAGCCCACAAGTTAGTGGC
1 ACCCTTTCAAAGCCCACAAGTCAGTGGC
*
498146 ACTCTTTTCAAAGCCCACAAGAT-AGTGGC
1 AC-CCTTTCAAAGCCCACAAG-TCAGTGGC
*
498175 ACCCCTTTCAAAGCCCACAAGTCAGTAGC
1 A-CCCTTTCAAAGCCCACAAGTCAGTGGC
*
498204 ACCCCTTTCAAAG-CCACAAGTTAGTGGC
1 A-CCCTTTCAAAGCCCACAAGTCAGTGGC
* * *
498232 ACCTTTTCAAAACCCACAAGTCAATGGC
1 ACCCTTTCAAAGCCCACAAGTCAGTGGC
* *
498260 ACTCTTTTCAAAGCCCACAAGTTAGTGGC
1 AC-CCTTTCAAAGCCCACAAGTCAGTGGC
* * *
498289 ACTCTTTTCAAAGCCCACACAAGTCGGTAGC
1 AC-CCTTTCAAAG-CC-CACAAGTCAGTGGC
* * * *
498320 AACTCTTTTGAAAGCCTACACAAATTAGTGGC
1 -AC-CCTTTCAAAGCC--CACAAGTCAGTGGC
*
498352 ACCCTTCCAAAGCCCACAAGTCAGTGGC
1 ACCCTTTCAAAGCCCACAAGTCAGTGGC
* **
498380 ACCCTTTTAAAGCCCACAAG-CTAGTAGTA
1 ACCCTTTCAAAGCCCACAAGTC-AGT-GGC
* *
498409 ACTCTTTTCAAAGCCCACACGAGTCGGTGGC
1 AC-CCTTTCAAAGCCCACA--AGTCAGTGGC
* * *
498440 AACTCTTTTCAAGGCCCACATAAGTTAGTGGC
1 -AC-CCTTTCAAAGCCCAC--AAGTCAGTGGC
498472 ACCCTTT
1 ACCCTTT
498479 TTTTTTATAA
Statistics
Matches: 1235, Mismatches: 140, Indels: 130
0.82 0.09 0.09
Matches are distributed among these distances:
27 19 0.02
28 350 0.28
29 512 0.41
30 131 0.11
31 111 0.09
32 110 0.09
33 1 0.00
34 1 0.00
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.22
Consensus pattern (28 bp):
ACCCTTTCAAAGCCCACAAGTCAGTGGC
Found at i:498128 original size:262 final size:258
Alignment explanation
Indices: 497014--498478 Score: 1725
Period size: 262 Copynumber: 5.6 Consensus size: 258
497004 GTTTAAACCC
497014 TTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGC
1 TTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGC
* * * *
497079 CCACAAGTCAGGGGTAC-CCTTTCAAAGCCCATAAG-TCAGTGGCACCCCTTTCAAAGCCCACGC
66 CCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGAT-AGTGGCACCCCTTTCAAAGCCCA--C
*
497142 AAGTCAGTGGCACCCTTTTAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGAT-AG
128 AAGTCAGTGGCACCCTTTCAAAG-CCACAAGTCAGTGGCAC-CTTTTCAAAGCCCACAAG-TCAG
* * *
497206 TGGCACCCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTT-AAAGCCCACA-AGTC-AGTGGC-
190 TGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACACAGTCGA-TGGCA
*
497267 ATTCT
254 ACTCT
* ** *
497272 TTTCAAAGCCCTCAAAACAGTGGCACCCCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAG
1 TTTCAAAGCCCACAAGTCAGTGGCA-CCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAG
* * * * * *
497337 CCCACAAGCCAATGGCAC-CTTTTCAAAGCCCACAAGTTAGTGGCACTCTTTTTAAAGCCCACAA
65 CCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGATAGTGGCACCCCTTTCAAAGCCCACAA
* *
497401 GTCAGTGGCACCCTTTTCAAAGCCTACACGAGTCGGTGGCAACTCTTTCCAAAGCCCACAAGTCA
130 GTCAGTGGCACCC-TTTCAAAGCC-ACA--AGTCAGTGGC-AC-CTTTTCAAAGCCCACAAGTCA
* * *
497466 GTGGCACTATTTTCAAAGCCCACACGAGCCCGTGGCAACTCTTTTCAAAGCCCACA-AGTC-AGT
189 GTGGCACTCTTTTCAAAGCCCACA--AGTCAGTGGC-ACTCTTTTCAAAGCCCACACAGTCGA-T
* *
497529 GGC-ACCCC
250 GGCAACTCT
* * * * *
497537 TTTCAAAGCCCACGCAAGTTAGTGGCACCCTTTTAAAGCCCATAAGTTAGTGGCACTCTTTACAA
1 TTTCAAAGCCCA--CAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTT-CAA
* * * * * *
497602 AGCCCACAAGACAGTGGCACCCCTTTCAAAGCCCATAAGTTAGTGGCACCCCTTTTAAAGCCCAC
63 AGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGATAGTGGCACCCCTTTCAAAGCCCAC
** * * *
497667 AAGTCAGTGGCACTATTTTCAAAGCCCACAAGACAGTGGCACCCCTTTCAAAGCCTACAAGTCAG
128 AAGTCAGTGGCAC-CCTTTCAAAG-CCACAAGTCAGTGGCA-CCTTTTCAAAGCCCACAAGTCAG
* * * *
497732 TGGCAC-CCTTTCAAAGCCTACAAGTTAGTGGCACTCTTTTCAAAGCCCACACGAGTCGGTGGCA
190 TGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAC-AGTCGATGGCA
*
497796 ACTAT
254 ACTCT
* * * *
497801 TTTCAAAGCCCACAAGTCAGTGACACCCCTTTAAAAGCCCACGCAAGTCAGTGGCACCTTTTTAA
1 TTTCAAAGCCCACAAGTCAGTGGCA-CCCTTTCAAAGCCCA--CAAGTCAGTGGCACCCTTTCAA
* *
497866 AGCCCACAAGTTAGTGGCACTCTTTTTAAAGCCCACAAGATAGTGGCACCCCTTTCAAAGCCCAC
63 AGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGATAGTGGCACCCCTTTCAAAGCCCAC
* *
497931 AACTCAGTGGCATCCCTTTCAAAGCCACAAGTCAGTGGCACCTTTTCAAAACCCACAAGTCAGTG
128 AAGTCAGTGGCA-CCCTTTCAAAGCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTG
* *
497996 GCACTCTTTTCGAAGCCCACAAGTCAGTGGTACTCTTTTCAAAGCCCACACGAGTCGATGGCAAC
192 GCACTCTTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAC-AGTCGATGGCAAC
498061 TCT
256 TCT
*
498064 TTTCAAA-CCCACAAGTCAGTGGCACCCCTTTCAAAGCCCACGCAAGTCAGTGGCACCCTTTTAA
1 TTTCAAAGCCCACAAGTCAGTGGCA-CCCTTTCAAAGCCCA--CAAGTCAGTGGCACCCTTTCAA
*
498128 AGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGATAGTGGCACCCCTTTCAAAGCCCAC
63 AGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGATAGTGGCACCCCTTTCAAAGCCCAC
* * * *
498193 AAGTCAGTAGCACCCCTTTCAAAGCCACAAGTTAGTGGCACCTTTTCAAAACCCACAAGTCAATG
128 AAGTCAGTGGCA-CCCTTTCAAAGCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTG
* * *
498258 GCACTCTTTTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACACAAGTCGGTAGCAAC
192 GCACTCTTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAC-AGTCGATGGCAAC
498323 TCT
256 TCT
* * * * *
498326 TTTGAAAGCCTACACAAATTAGTGGCACCCTTCCAAAGCCCACAAGTCAGTGGCACCCTTTTAAA
1 TTTCAAAGCC--CACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAA
** * * * * *
498391 GCCCACAAG-CTAGTAGTAACTCTTTTCAAAGCCCACACGAGTCGGTGGCAACTCTTTTCAAGGC
64 GCCCACAAGTC-AGT-GGCACTCTTTTCAAAGCCCACAAGA-T-AGTGGC-ACCCCTTTCAAAGC
*
498455 CCACATAAGTTAGTGGCACCCTTT
124 CCAC--AAGTCAGTGGCACCCTTT
498479 TTTTTTATAA
Statistics
Matches: 1055, Mismatches: 114, Indels: 67
0.85 0.09 0.05
Matches are distributed among these distances:
257 18 0.02
258 32 0.03
259 88 0.08
260 11 0.01
261 61 0.06
262 325 0.31
263 132 0.13
264 127 0.12
265 93 0.09
266 55 0.05
267 37 0.04
268 74 0.07
269 2 0.00
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.22
Consensus pattern (258 bp):
TTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGC
CCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGATAGTGGCACCCCTTTCAAAGCCCACAAG
TCAGTGGCACCCTTTCAAAGCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCAC
TCTTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACACAGTCGATGGCAACTCT
Done.