Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2753
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 197694
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
File 1 of 2
Found at i:581 original size:22 final size:22
Alignment explanation
Indices: 553--603 Score: 102
Period size: 22 Copynumber: 2.3 Consensus size: 22
543 GTGCATATTT
553 AGTATACTTATCAATAGTGACC
1 AGTATACTTATCAATAGTGACC
575 AGTATACTTATCAATAGTGACC
1 AGTATACTTATCAATAGTGACC
597 AGTATAC
1 AGTATAC
604 AATTGAACCC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.37, C:0.18, G:0.14, T:0.31
Consensus pattern (22 bp):
AGTATACTTATCAATAGTGACC
Found at i:4640 original size:30 final size:30
Alignment explanation
Indices: 4606--4664 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
4596 TCCTAGCTCT
4606 TTCTGTTACAGCTCCCAGCTCCAGCTCCAA
1 TTCTGTTACAGCTCCCAGCTCCAGCTCCAA
4636 TTCTGTTACAGCTCCCAGCTCCAGCTCCA
1 TTCTGTTACAGCTCCCAGCTCCAGCTCCA
4665 GCTCCAACTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.19, C:0.41, G:0.14, T:0.27
Consensus pattern (30 bp):
TTCTGTTACAGCTCCCAGCTCCAGCTCCAA
Found at i:7238 original size:29 final size:30
Alignment explanation
Indices: 7170--7239 Score: 81
Period size: 30 Copynumber: 2.4 Consensus size: 30
7160 TTTATAAAAA
*
7170 TTTCATTTTTTAATTTTTAAAATAATTATT
1 TTTCATTTTTTAATTTTTAAAATAATAATT
* *
7200 TTT-AGATTTTTATTTTTTAAAA-AATAATT
1 TTTCA-TTTTTTAATTTTTAAAATAATAATT
*
7229 TTTCCTTTTTT
1 TTTCATTTTTT
7240 TAAATTTTCC
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
29 15 0.45
30 18 0.55
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.64
Consensus pattern (30 bp):
TTTCATTTTTTAATTTTTAAAATAATAATT
Found at i:8659 original size:21 final size:20
Alignment explanation
Indices: 8633--8766 Score: 87
Period size: 20 Copynumber: 6.7 Consensus size: 20
8623 TTCTACAATT
8633 TGTATCGATACA-AACAGTAAA
1 TGTATCGATACATAA-A-TAAA
*
8654 TGTATCGATACATAAATAGA
1 TGTATCGATACATAAATAAA
***
8674 TGTATCGATACATGCTTGAAA
1 TGTATCGATACATAAAT-AAA
* * *
8695 TATATCGATACA-AAATCAG
1 TGTATCGATACATAAATAAA
* * * *
8714 T-TAAC-ATTCTAGAAAGGAAA
1 TGTATCGATAC-ATAAA-TAAA
*
8734 TGTATCGATACATAAGTAAA
1 TGTATCGATACATAAATAAA
8754 TGTATCGATACAT
1 TGTATCGATACAT
8767 GCTCACAATT
Statistics
Matches: 85, Mismatches: 21, Indels: 15
0.70 0.17 0.12
Matches are distributed among these distances:
17 3 0.04
18 4 0.05
19 5 0.06
20 36 0.42
21 32 0.38
22 5 0.06
ACGTcount: A:0.43, C:0.13, G:0.15, T:0.29
Consensus pattern (20 bp):
TGTATCGATACATAAATAAA
Found at i:8786 original size:22 final size:20
Alignment explanation
Indices: 8754--8808 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 20
8744 CATAAGTAAA
* *
8754 TGTATCGATACATGCTCACAAT
1 TGTATCAATACATGATC-C-AT
*
8776 TGTATCAATACATTATCCAT
1 TGTATCAATACATGATCCAT
8796 TGTATCAATACAT
1 TGTATCAATACAT
8809 TATGGATTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
20 15 0.50
21 1 0.03
22 14 0.47
ACGTcount: A:0.35, C:0.20, G:0.09, T:0.36
Consensus pattern (20 bp):
TGTATCAATACATGATCCAT
Found at i:8799 original size:20 final size:20
Alignment explanation
Indices: 8774--8811 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
8764 CATGCTCACA
8774 ATTGTATCAATACATTATCC
1 ATTGTATCAATACATTATCC
8794 ATTGTATCAATACATTAT
1 ATTGTATCAATACATTAT
8812 GGATTTTTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.37, C:0.16, G:0.05, T:0.42
Consensus pattern (20 bp):
ATTGTATCAATACATTATCC
Found at i:9512 original size:13 final size:13
Alignment explanation
Indices: 9494--9520 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
9484 CCACATTACT
9494 TGAAACAAACCAC
1 TGAAACAAACCAC
9507 TGAAACAAACCAC
1 TGAAACAAACCAC
9520 T
1 T
9521 TTTCCATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.30, G:0.07, T:0.11
Consensus pattern (13 bp):
TGAAACAAACCAC
Found at i:10210 original size:24 final size:24
Alignment explanation
Indices: 10183--10268 Score: 102
Period size: 24 Copynumber: 3.6 Consensus size: 24
10173 ATCGATATAG
*
10183 TGAACAACGATGAATAGTGATACA
1 TGAACAATGATGAATAGTGATACA
* *
10207 TGAACAGTGATGAACT-GTGATGCA
1 TGAACAATGATGAA-TAGTGATACA
* * *
10231 TGAACAGTGATGAACAGTTATACA
1 TGAACAATGATGAATAGTGATACA
10255 TGAACAATGATGAA
1 TGAACAATGATGAA
10269 ACAATATGAA
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
24 52 0.98
25 1 0.02
ACGTcount: A:0.42, C:0.12, G:0.23, T:0.23
Consensus pattern (24 bp):
TGAACAATGATGAATAGTGATACA
Found at i:13168 original size:13 final size:13
Alignment explanation
Indices: 13150--13175 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
13140 TACACCAAGT
13150 ATGTATCGATACA
1 ATGTATCGATACA
13163 ATGTATCGATACA
1 ATGTATCGATACA
13176 CAAAAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:18611 original size:13 final size:13
Alignment explanation
Indices: 18593--18617 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
18583 CATTTTTCTT
18593 TGTATCGATACAC
1 TGTATCGATACAC
18606 TGTATCGATACA
1 TGTATCGATACA
18618 GGGGGATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:21040 original size:13 final size:13
Alignment explanation
Indices: 21022--21047 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
21012 TACACCAAGT
21022 ATGTATCGATACA
1 ATGTATCGATACA
21035 ATGTATCGATACA
1 ATGTATCGATACA
21048 CAAAAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:25562 original size:168 final size:163
Alignment explanation
Indices: 25212--26009 Score: 583
Period size: 166 Copynumber: 4.8 Consensus size: 163
25202 AATTACGAGG
* * * *
25212 TTTTCT-TCTCCGTAATTTTTTTGGAGGATTTTTC-TAGGTTTTTAATTTTTAAAATTCATAAAA
1 TTTTCTAT-TCCGTAAATTTTTTGGGGGATTTTTCTTAGG-TTTCAATTTTTAAAATTTATAAAA
* * * * *
25275 AATTATTAGTTAATTTAAATTAAATCAGTTTTCAAAAATTCATTCATTTTCATAAATATTTGAAT
64 TATTATTA-TTAATTTAAATTAAATCAGTTTTCAAAAATTTATTCATTTTCATGAGTTTTTGAAT
* * * * * * *
25340 TTTTTCTTTGAAAACTACCTTTTTTTTGAAATACGAAAT
128 TTTTTCTTT-AAAA-TTCCCTATTTCTAAAAAAC-AGAT
*
25379 TTTT-TACTT-CGTAAATGTTTTTGGTGGGATTTTTC-TAGGCTTTCAATTTTTAAAATTTATCA
1 TTTTCTA-TTCCGTAAAT-TTTTTGG-GGGATTTTTCTTAGG-TTTCAATTTTTAAAATTTATAA
* * * * *
25441 AATATTATTATTACATTTATATTAAATCAGTTTTTTAAAAATTTAGTCATTTTTATGGGTTTTTG
62 AATATTATTATTA-ATTTAAATTAAATCAG-TTTTCAAAAATTTATTCATTTTCATGAGTTTTTG
25506 AATTTTTT-TCTTAAAATTTCCCTATTTCTAAAAAACAGAT
125 AATTTTTTCT-TTAAAA-TTCCCTATTTCTAAAAAACAGAT
25546 TTTTCTATTCCGTAAATTTTTTCGGGGGGA-TTTTCTTA-GTTTCTAATTTTTAAAATTTATAAA
1 TTTTCTATTCCGTAAATTTTTT--GGGGGATTTTTCTTAGGTTTC-AATTTTTAAAATTTATAAA
* *
25609 ATATTATTATCTAATTCAAATTAAATCAGTTTTGAAAAATTTATTCATTTTCATGAGTTTTTG-A
63 ATATTATTAT-TAATTTAAATTAAATCAGTTTTCAAAAATTTATTCATTTTCATGAGTTTTTGAA
* * *
25673 TTTTTTCTTTGAAA-TCCCTCTCTTCTAAAAAATC-GAG
127 TTTTTTCTTTAAAATTCCCTAT-TTCTAAAAAA-CAGAT
* * * * * * *
25710 TTTTCTAATCCATAAATATTTTTGGGGGAATTTTCTTTGGTTTAAAATTTTTAAAATGTATCTAA
1 TTTTCTATTCCGTAAAT-TTTTTGGGGGATTTTTCTTAGGTTT-CAATTTTTAAAATTTAT-AAA
* ** ** * * *
25775 A-ATT-TTATGGAATTTCCATTAAATTGGTTTTGAAAAATTCATTAATTTTCATGAGCTTTTT-A
63 ATATTATTAT-TAATTTAAATTAAATCAGTTTTCAAAAATTTATTCATTTTCATGAG-TTTTTGA
* * * * *
25837 TTTTTTTC-TTGAAATGCCCATTTTTCCAAAAAA-ATTGAT
126 ATTTTTTCTTTAAAATTCCC-TATTTCTAAAAAACA--GAT
* * * * * * * * **
25876 TTTTCTACTT-CATAAATTTTTTTGGGAGAATTTTCTTCGATTTAAAATTTTTAGAATTCATCTA
1 TTTTCTA-TTCCGTAAA-TTTTTTGGGGGATTTTTCTTAGGTTT-CAATTTTTAAAATTTATAAA
** * ** *
25940 ATATT-TTCATTTAATTTTCATTAAATCAGTTTTTGAAAAATCAATTTATTTT-ATGAGTTTTT-
63 ATATTATT-A-TTAATTTAAATTAAATCAG-TTTTCAAAAATTTATTCATTTTCATGAGTTTTTG
26002 AATTTTTT
125 AATTTTTT
26010 TTGTATTTAT
Statistics
Matches: 525, Mismatches: 71, Indels: 71
0.79 0.11 0.11
Matches are distributed among these distances:
163 12 0.02
164 82 0.16
165 66 0.13
166 116 0.22
167 99 0.19
168 112 0.21
169 38 0.07
ACGTcount: A:0.31, C:0.10, G:0.09, T:0.50
Consensus pattern (163 bp):
TTTTCTATTCCGTAAATTTTTTGGGGGATTTTTCTTAGGTTTCAATTTTTAAAATTTATAAAATA
TTATTATTAATTTAAATTAAATCAGTTTTCAAAAATTTATTCATTTTCATGAGTTTTTGAATTTT
TTCTTTAAAATTCCCTATTTCTAAAAAACAGAT
Found at i:25634 original size:167 final size:165
Alignment explanation
Indices: 25212--26009 Score: 564
Period size: 168 Copynumber: 4.8 Consensus size: 165
25202 AATTACGAGG
* * * *
25212 TTTTCT-TCTCCGT-AAT-TTTTTTGGAGGATTTTTCTAGGTTTTTAATTTTTAAAATTCATAAA
1 TTTTCTAT-TCCGTAAATATTTTTGGGGGGATTTTTCTAGGTTTCTAATTTTTAAAATTTATAAA
* * * * *
25274 AAATTATTAGTTAATTTAAATTAAATCAGTTTTCAAAAATTCATTCATTTTCATAAATATTTGAA
65 ATATTATTA-TTAATTTAAATTAAATCAGTTTTCAAAAATTTATTCATTTTCATGAGTTTTTGAA
* * * * * * *
25339 TTTTTTCTTTGAAAACTACCTTTTTTTTGAAATACGAAAT
129 TTTTTTCTTT-AAAA-TTCCCTATTTCTAAAAAAC-AGAT
* * *
25379 TTTT-TACTT-CGTAAATGTTTTTGGTGGGATTTTTCTAGGCTTTC-AATTTTTAAAATTTATCA
1 TTTTCTA-TTCCGTAAATATTTTTGGGGGGATTTTTCTAGG-TTTCTAATTTTTAAAATTTATAA
* * * * *
25441 AATATTATTATTACATTTATATTAAATCAGTTTTTTAAAAATTTAGTCATTTTTATGGGTTTTTG
64 AATATTATTATTA-ATTTAAATTAAATCAG-TTTTCAAAAATTTATTCATTTTCATGAGTTTTTG
25506 AATTTTTT-TCTTAAAATTTCCCTATTTCTAAAAAACAGAT
127 AATTTTTTCT-TTAAAA-TTCCCTATTTCTAAAAAACAGAT
25546 TTTTCTATTCCGTAAAT-TTTTTCGGGGGGA-TTTTCTTA-GTTTCTAATTTTTAAAATTTATAA
1 TTTTCTATTCCGTAAATATTTTT-GGGGGGATTTTTC-TAGGTTTCTAATTTTTAAAATTTATAA
* *
25608 AATATTATTATCTAATTCAAATTAAATCAGTTTTGAAAAATTTATTCATTTTCATGAGTTTTTG-
64 AATATTATTAT-TAATTTAAATTAAATCAGTTTTCAAAAATTTATTCATTTTCATGAGTTTTTGA
* * *
25672 ATTTTTTCTTTGAAA-TCCCTCTCTTCTAAAAAATC-GAG
128 ATTTTTTCTTTAAAATTCCCTAT-TTCTAAAAAA-CAGAT
* * * * ** * *
25710 TTTTCTAATCCATAAATATTTTT-GGGGGAATTTTCTTTGGTTTAAAATTTTTAAAATGTATCTA
1 TTTTCTATTCCGTAAATATTTTTGGGGGGATTTTTC-TAGGTTTCTAATTTTTAAAATTTAT-AA
* ** ** * * *
25774 AA-ATT-TTATGGAATTTCCATTAAATTGGTTTTGAAAAATTCATTAATTTTCATGAGCTTTTT-
64 AATATTATTAT-TAATTTAAATTAAATCAGTTTTCAAAAATTTATTCATTTTCATGAG-TTTTTG
* * * * *
25836 ATTTTTTTC-TTGAAATGCCCATTTTTCCAAAAAA-ATTGAT
127 AATTTTTTCTTTAAAATTCCC-TATTTCTAAAAAACA--GAT
* * * * * * ** * * **
25876 TTTTCTACTT-CATAAAT-TTTTTTGGGAGAATTTTCTTCGATTTAAAATTTTTAGAATTCATCT
1 TTTTCTA-TTCCGTAAATATTTTTGGGGGGATTTTTC-TAGGTTTCTAATTTTTAAAATTTATAA
** * ** *
25939 AATATT-TTCATTTAATTTTCATTAAATCAGTTTTTGAAAAATCAATTTATTTT-ATGAGTTTTT
64 AATATTATT-A-TTAATTTAAATTAAATCAG-TTTTCAAAAATTTATTCATTTTCATGAGTTTTT
26002 -AATTTTTT
126 GAATTTTTT
26010 TTGTATTTAT
Statistics
Matches: 524, Mismatches: 73, Indels: 69
0.79 0.11 0.10
Matches are distributed among these distances:
163 12 0.02
164 82 0.16
165 71 0.14
166 109 0.21
167 94 0.18
168 117 0.22
169 39 0.07
ACGTcount: A:0.31, C:0.10, G:0.09, T:0.50
Consensus pattern (165 bp):
TTTTCTATTCCGTAAATATTTTTGGGGGGATTTTTCTAGGTTTCTAATTTTTAAAATTTATAAAA
TATTATTATTAATTTAAATTAAATCAGTTTTCAAAAATTTATTCATTTTCATGAGTTTTTGAATT
TTTTCTTTAAAATTCCCTATTTCTAAAAAACAGAT
Found at i:26499 original size:10 final size:10
Alignment explanation
Indices: 26480--26521 Score: 68
Period size: 10 Copynumber: 4.3 Consensus size: 10
26470 GCAAGTAAGC
26480 AAAAAA-AAA
1 AAAAAAGAAA
26489 AAAAAAGAAA
1 AAAAAAGAAA
26499 AAAAAAGAAA
1 AAAAAAGAAA
*
26509 AAGAAAGAAA
1 AAAAAAGAAA
26519 AAA
1 AAA
26522 GTGAGAAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
9 6 0.20
10 24 0.80
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (10 bp):
AAAAAAGAAA
Found at i:26522 original size:11 final size:11
Alignment explanation
Indices: 26485--26538 Score: 58
Period size: 11 Copynumber: 5.1 Consensus size: 11
26475 TAAGCAAAAA
*
26485 AAAAAAAAAAG
1 AAAAAAGAAAG
26496 AAAAAA-AAAG
1 AAAAAAGAAAG
26506 -AAAAAGAAAG
1 AAAAAAGAAAG
**
26516 AAAAAAGTGAG
1 AAAAAAGAAAG
*
26527 AAAATAGAAAG
1 AAAAAAGAAAG
26538 A
1 A
26539 CTAAGCTAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
9 5 0.14
10 8 0.22
11 23 0.64
ACGTcount: A:0.80, C:0.00, G:0.17, T:0.04
Consensus pattern (11 bp):
AAAAAAGAAAG
Found at i:26530 original size:20 final size:16
Alignment explanation
Indices: 26480--26522 Score: 68
Period size: 16 Copynumber: 2.6 Consensus size: 16
26470 GCAAGTAAGC
*
26480 AAAAAAAAAAAAAAAG
1 AAAAAAAAAGAAAAAG
26496 AAAAAAAAAGAAAAAG
1 AAAAAAAAAGAAAAAG
26512 AAAGAAAAAAG
1 AAA-AAAAAAG
26523 TGAGAAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
16 18 0.72
17 7 0.28
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAGAAAAAG
Found at i:27958 original size:25 final size:25
Alignment explanation
Indices: 27924--27973 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
27914 CTTTTTATAA
27924 ATTGGGACAAAAACATCATTTCTTT
1 ATTGGGACAAAAACATCATTTCTTT
27949 ATTGGGACAAAAACATCATTTCTTT
1 ATTGGGACAAAAACATCATTTCTTT
27974 CATTTTTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.36
Consensus pattern (25 bp):
ATTGGGACAAAAACATCATTTCTTT
Found at i:28201 original size:153 final size:153
Alignment explanation
Indices: 27986--28272 Score: 434
Period size: 153 Copynumber: 1.9 Consensus size: 153
27976 TTTTTCAAGC
* *
27986 CCTTTAGGGGTATCGAGTACTTTTGTGTCAAAGGTATCCCCTAAGGGCATTTTTGTACTTTTTTA
1 CCTTTAGGGGTATCGAGTACTTTTATGTCAAAGGTATCCCCTAAGGGCATTTTTGTAATTTTTTA
* * * *
28051 GAACCGAGTCCTAGGTTATCACCGGGTCCACTTTTATGCC-AAAGGTGGACATTTAGGATATGTT
66 GAACCGAGTCCTAGGTTATCACCGAGTCCACTTTCATGCCGAAA-GTGGACATTTAAGATAAGTT
28115 CATCCATCTAAATCCTTTTTAGGT
130 CATCCATCTAAATCCTTTTTAGGT
*
28139 CCTTTAGGGGTATCGAGTACTTTTATGTCGAAGGTATCCCCT-AGGGACATTTTTGTAATTTTTT
1 CCTTTAGGGGTATCGAGTACTTTTATGTCAAAGGTATCCCCTAAGGG-CATTTTTGTAATTTTTT
* * * **
28203 AGAATCGAGTCCTAGGTTATCATCGAGTCCGCTTTCATGCCGAAAGTGGGTATTTAAGATAAGTT
65 AGAACCGAGTCCTAGGTTATCACCGAGTCCACTTTCATGCCGAAAGTGGACATTTAAGATAAGTT
28268 CATCC
130 CATCC
28273 TTTTTAAAAT
Statistics
Matches: 120, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
152 4 0.03
153 113 0.94
154 3 0.03
ACGTcount: A:0.23, C:0.19, G:0.22, T:0.36
Consensus pattern (153 bp):
CCTTTAGGGGTATCGAGTACTTTTATGTCAAAGGTATCCCCTAAGGGCATTTTTGTAATTTTTTA
GAACCGAGTCCTAGGTTATCACCGAGTCCACTTTCATGCCGAAAGTGGACATTTAAGATAAGTTC
ATCCATCTAAATCCTTTTTAGGT
Found at i:28353 original size:155 final size:153
Alignment explanation
Indices: 27986--28356 Score: 415
Period size: 153 Copynumber: 2.4 Consensus size: 153
27976 TTTTTCAAGC
* *** * *
27986 CCTTTAGGGGTATCGAGTACTTTTGTGTCAAAGGTATCCCCTAAGGGCATTTTTGTACTTTTTTA
1 CCTTTAGAGGTATCGAGTACTTTTACATCGAAGGTATCCCCTAAGGGCATTTTTGTAATTTTTTA
* * * *
28051 GAACCGAGTCCTAGGTTATCACCGGGTCCACTTTTATGCCAAAGGTGGACATTTAGGATATGTTC
66 GAACCGAGTCCTAGGTTATCACCGAGTCCACTTTCATGCCAAAGGTGGACATTTAAGATAAGTTC
* * *
28116 ATCCATCTAAATCCTTTTTAGGT
131 ATCCATCTAAATCCTTCTAAAGT
* **
28139 CCTTTAGGGGTATCGAGTACTTTTATGTCGAAGGTATCCCCT-AGGGACATTTTTGTAATTTTTT
1 CCTTTAGAGGTATCGAGTACTTTTACATCGAAGGTATCCCCTAAGGG-CATTTTTGTAATTTTTT
* * * **
28203 AGAATCGAGTCCTAGGTTATCATCGAGTCCGCTTTCATGCCGAAA-GTGGGTATTTAAGATAAGT
65 AGAACCGAGTCCTAGGTTATCACCGAGTCCACTTTCATGCC-AAAGGTGGACATTTAAGATAAGT
* *
28267 TCATCCTTTTTAAAATCCTTCTAAAGT
129 TCATCC-ATCT-AAATCCTTCTAAAGT
* * * * **
28294 TCTTTAGAGGTATC-AGGTACTTTTACATTGAAGGTATCTCCTAAAGGCATTTTCATAATTTTT
1 CCTTTAGAGGTATCGA-GTACTTTTACATCGAAGGTATCCCCTAAGGGCATTTTTGTAATTTTT
28357 CTTGAATTTA
Statistics
Matches: 186, Mismatches: 26, Indels: 10
0.84 0.12 0.05
Matches are distributed among these distances:
152 4 0.02
153 113 0.61
154 6 0.03
155 60 0.32
156 3 0.02
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.38
Consensus pattern (153 bp):
CCTTTAGAGGTATCGAGTACTTTTACATCGAAGGTATCCCCTAAGGGCATTTTTGTAATTTTTTA
GAACCGAGTCCTAGGTTATCACCGAGTCCACTTTCATGCCAAAGGTGGACATTTAAGATAAGTTC
ATCCATCTAAATCCTTCTAAAGT
Found at i:32942 original size:32 final size:30
Alignment explanation
Indices: 32906--32964 Score: 75
Period size: 32 Copynumber: 1.9 Consensus size: 30
32896 GAAAACAAAT
32906 ACAAAGAGCT-TAGAAAAATAATAACAATATGA
1 ACAAA-AGCTCTAGAAAAAT-ATAA-AATATGA
*
32938 ACAAAAGCTCTTGAAAAATATAAAATA
1 ACAAAAGCTCTAGAAAAATATAAAATA
32965 CTTTGATCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
30 4 0.16
31 8 0.32
32 13 0.52
ACGTcount: A:0.59, C:0.10, G:0.10, T:0.20
Consensus pattern (30 bp):
ACAAAAGCTCTAGAAAAATATAAAATATGA
Found at i:33264 original size:13 final size:13
Alignment explanation
Indices: 33246--33271 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
33236 AATTTTTTTG
33246 TGTATCGATACAT
1 TGTATCGATACAT
33259 TGTATCGATACAT
1 TGTATCGATACAT
33272 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:35816 original size:13 final size:13
Alignment explanation
Indices: 35798--35822 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
35788 ATAATCCCCC
35798 TGTATCGATACAT
1 TGTATCGATACAT
35811 TGTATCGATACA
1 TGTATCGATACA
35823 AAGAAAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:39763 original size:21 final size:21
Alignment explanation
Indices: 39734--39778 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
39724 AAGTTTTTAT
*
39734 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
39754 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
39776 TTT
1 TTT
39779 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:41696 original size:32 final size:30
Alignment explanation
Indices: 41660--41718 Score: 75
Period size: 32 Copynumber: 1.9 Consensus size: 30
41650 GAAAACAAAT
41660 ACAAAGAGCT-TAGAAAAATAATAACAATATGA
1 ACAAA-AGCTCTAGAAAAAT-ATAA-AATATGA
*
41692 ACAAAAGCTCTTGAAAAATATAAAATA
1 ACAAAAGCTCTAGAAAAATATAAAATA
41719 CTTTGATCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
30 4 0.16
31 8 0.32
32 13 0.52
ACGTcount: A:0.59, C:0.10, G:0.10, T:0.20
Consensus pattern (30 bp):
ACAAAAGCTCTAGAAAAATATAAAATATGA
Found at i:42017 original size:13 final size:13
Alignment explanation
Indices: 41999--42024 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
41989 CAATTTTTTG
41999 TGTATCGATACAT
1 TGTATCGATACAT
42012 TGTATCGATACAT
1 TGTATCGATACAT
42025 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:42039 original size:32 final size:33
Alignment explanation
Indices: 41979--42042 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
41969 TACAAGCCAA
** *
41979 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
42012 TGTATCGATAC-ATACTTGGTGTATCGATACA
1 TGTATCGATACAATACTTGGTGTATCGATACA
42043 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATACAT
Found at i:53368 original size:21 final size:21
Alignment explanation
Indices: 53327--53403 Score: 91
Period size: 22 Copynumber: 3.6 Consensus size: 21
53317 ATATTTGACA
* *
53327 AAGGGGGAGAAATGCTGTGATT
1 AAGGGGGAGAAAT-TTTTGATT
53349 AAGGGGGAGAAATTTTTGATT
1 AAGGGGGAGAAATTTTTGATT
* **
53370 AAAGGGGAGAAATTCTTCAATT
1 AAGGGGGAGAAATT-TTTGATT
53392 AAGGGGGAGAAA
1 AAGGGGGAGAAA
53404 AATGAAAAAT
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
21 19 0.40
22 29 0.60
ACGTcount: A:0.38, C:0.04, G:0.35, T:0.23
Consensus pattern (21 bp):
AAGGGGGAGAAATTTTTGATT
Found at i:53965 original size:13 final size:13
Alignment explanation
Indices: 53947--53973 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
53937 ACATTATGCT
53947 TTGTATCGATACA
1 TTGTATCGATACA
53960 TTGTATCGATACA
1 TTGTATCGATACA
53973 T
1 T
53974 GTTCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:54003 original size:20 final size:19
Alignment explanation
Indices: 53957--54013 Score: 87
Period size: 19 Copynumber: 2.9 Consensus size: 19
53947 TTGTATCGAT
*
53957 ACATTGTATCGATACATGT
1 ACATTGTATCGATACATGG
*
53976 TCATTGTATCGATACATGG
1 ACATTGTATCGATACATGG
53995 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
54014 AGATTGGCAG
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 18 0.53
20 16 0.47
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.35
Consensus pattern (19 bp):
ACATTGTATCGATACATGG
Found at i:54078 original size:33 final size:33
Alignment explanation
Indices: 54041--54110 Score: 106
Period size: 33 Copynumber: 2.1 Consensus size: 33
54031 CCTACCAATG
*
54041 ATTGTATCGATACATGGT-ACAATGTATCGATAC
1 ATTGTATCGATACATGATGA-AATGTATCGATAC
*
54074 ATTGTATCGATACATGATGAATTGTATCGATAC
1 ATTGTATCGATACATGATGAAATGTATCGATAC
54107 ATTG
1 ATTG
54111 CTTGTAACGG
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
33 33 0.97
34 1 0.03
ACGTcount: A:0.33, C:0.13, G:0.19, T:0.36
Consensus pattern (33 bp):
ATTGTATCGATACATGATGAAATGTATCGATAC
Found at i:54079 original size:13 final size:13
Alignment explanation
Indices: 54058--54110 Score: 55
Period size: 13 Copynumber: 4.5 Consensus size: 13
54048 CGATACATGG
*
54058 TACAATGTATCGA
1 TACATTGTATCGA
54071 TACATTGTATCGA
1 TACATTGTATCGA
54084 TACA-TG-AT-G-
1 TACATTGTATCGA
54093 -A-ATTGTATCGA
1 TACATTGTATCGA
54104 TACATTG
1 TACATTG
54111 CTTGTAACGG
Statistics
Matches: 33, Mismatches: 1, Indels: 12
0.72 0.02 0.26
Matches are distributed among these distances:
7 1 0.03
8 3 0.09
9 2 0.06
10 2 0.06
11 2 0.06
12 3 0.09
13 20 0.61
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.36
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:56508 original size:13 final size:13
Alignment explanation
Indices: 56490--56515 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
56480 CATTTTGGGA
56490 TGTATCGATACAT
1 TGTATCGATACAT
56503 TGTATCGATACAT
1 TGTATCGATACAT
56516 CTTGTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:56512 original size:33 final size:32
Alignment explanation
Indices: 56470--56533 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
56460 TACAAGCCAA
*
56470 TGTATCGATACATTTTGGGATGTATCGATACAT
1 TGTATCGATACATCTTGGG-TGTATCGATACAT
*
56503 TGTATCGATACATCTTGTGTGTATCGATACA
1 TGTATCGATACATCTTGGGTGTATCGATACA
56534 AACAGTTAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (32 bp):
TGTATCGATACATCTTGGGTGTATCGATACAT
Found at i:56622 original size:20 final size:21
Alignment explanation
Indices: 56575--56626 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
56565 GCCAATGACC
*
56575 TGTATCGATACATTCTTTACA
1 TGTATCGATACATTCTGTACA
*
56596 AGTATCGATACATT-TGGT-CA
1 TGTATCGATACATTCT-GTACA
56616 TGTATCGATAC
1 TGTATCGATAC
56627 TGTGCAATCT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 13 0.48
21 14 0.52
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.38
Consensus pattern (21 bp):
TGTATCGATACATTCTGTACA
Found at i:58632 original size:21 final size:21
Alignment explanation
Indices: 58601--58645 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
58591 GACTGCTAGT
*
58601 TGGGGGCTGCCCCGTTGCGACC
1 TGGGGGCTG-CCCGTCGCGACC
*
58623 TGGGGG-TGCCGGTCGCGACC
1 TGGGGGCTGCCCGTCGCGACC
58643 TGG
1 TGG
58646 TGAGTGCTGC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 13 0.62
21 2 0.10
22 6 0.29
ACGTcount: A:0.04, C:0.31, G:0.47, T:0.18
Consensus pattern (21 bp):
TGGGGGCTGCCCGTCGCGACC
Found at i:62316 original size:20 final size:20
Alignment explanation
Indices: 62265--62357 Score: 91
Period size: 20 Copynumber: 4.6 Consensus size: 20
62255 ACCCTTAAAA
* *
62265 GTATCGATACACAATT-CAAA
1 GTATCGATACA-TATTGCAAT
62285 GTATCGATACATATTGCAAT
1 GTATCGATACATATTGCAAT
***
62305 GTATCGATACATGA-AAAAGAT
1 GTATCGATACAT-ATTGCA-AT
*
62326 GTATCGATACATGTTGCAAT
1 GTATCGATACATATTGCAAT
62346 GTATCGATACAT
1 GTATCGATACAT
62358 GAAAAAGATG
Statistics
Matches: 60, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
19 3 0.05
20 41 0.68
21 16 0.27
ACGTcount: A:0.39, C:0.15, G:0.16, T:0.30
Consensus pattern (20 bp):
GTATCGATACATATTGCAAT
Found at i:62329 original size:21 final size:21
Alignment explanation
Indices: 62303--62378 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
62293 ACATATTGCA
62303 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
62324 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
62344 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
62365 ATGTATCGATACAT
1 ATGTATCGATACAT
62379 TTCTTGGCAG
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 16 0.35
21 30 0.65
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:62336 original size:41 final size:41
Alignment explanation
Indices: 62285--62378 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
62275 ACAATTCAAA
62285 GTATCGATACATATTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATATTGCAATGTATCGATACATGAAAAAGAT
*
62326 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATATTGCAATGTATCGATACATGAAAAAGAT
62367 GTATCGATACAT
1 GTATCGATACAT
62379 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (41 bp):
GTATCGATACATATTGCAATGTATCGATACATGAAAAAGAT
Found at i:62358 original size:20 final size:20
Alignment explanation
Indices: 62285--62358 Score: 94
Period size: 20 Copynumber: 3.6 Consensus size: 20
62275 ACAATTCAAA
*
62285 GTATCGATACATATTGCAAT
1 GTATCGATACATGTTGCAAT
****
62305 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
62326 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
62346 GTATCGATACATG
1 GTATCGATACATG
62359 AAAAAGATGT
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:62435 original size:13 final size:13
Alignment explanation
Indices: 62417--62442 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
62407 TACAGCAAGT
62417 ATGTATCGATACA
1 ATGTATCGATACA
62430 ATGTATCGATACA
1 ATGTATCGATACA
62443 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:64693 original size:21 final size:21
Alignment explanation
Indices: 64660--64704 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
64650 TTGCAAGTTG
*
64660 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
64682 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
64702 AAA
1 AAA
64705 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:68624 original size:20 final size:21
Alignment explanation
Indices: 68555--68632 Score: 70
Period size: 20 Copynumber: 3.6 Consensus size: 21
68545 AATGTCCAAA
*
68555 ATGTATCGATACATGTTTT-T
1 ATGTATCGATACATCTTTTCT
* *
68575 GTGTATCGATACATCTGGAAATTCT
1 ATGTATCGATACATCT----TTTCT
68600 ATGTATCGATACAT-TTTTCT
1 ATGTATCGATACATCTTTTCT
*
68620 TTGTATCGATACA
1 ATGTATCGATACA
68633 ATGTATCGAT
Statistics
Matches: 47, Mismatches: 6, Indels: 10
0.75 0.10 0.16
Matches are distributed among these distances:
20 30 0.64
24 3 0.06
25 14 0.30
ACGTcount: A:0.27, C:0.14, G:0.15, T:0.44
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTCT
Found at i:68639 original size:13 final size:13
Alignment explanation
Indices: 68621--68658 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
68611 CATTTTTCTT
68621 TGTATCGATACAA
1 TGTATCGATACAA
*
68634 TGTATCGATACAC
1 TGTATCGATACAA
68647 TGTATCGATACA
1 TGTATCGATACA
68659 GGGTGATTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:71142 original size:20 final size:20
Alignment explanation
Indices: 71091--71183 Score: 91
Period size: 20 Copynumber: 4.6 Consensus size: 20
71081 ACCCTTAAAA
* *
71091 GTATCGATACACAATT-CAAA
1 GTATCGATACA-TATTGCAAT
71111 GTATCGATACATATTGCAAT
1 GTATCGATACATATTGCAAT
***
71131 GTATCGATACATGA-AAAAGAT
1 GTATCGATACAT-ATTGCA-AT
*
71152 GTATCGATACATGTTGCAAT
1 GTATCGATACATATTGCAAT
71172 GTATCGATACAT
1 GTATCGATACAT
71184 GAAAAAGATG
Statistics
Matches: 60, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
19 3 0.05
20 41 0.68
21 16 0.27
ACGTcount: A:0.39, C:0.15, G:0.16, T:0.30
Consensus pattern (20 bp):
GTATCGATACATATTGCAAT
Found at i:71155 original size:21 final size:21
Alignment explanation
Indices: 71129--71204 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
71119 ACATATTGCA
71129 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
71150 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
71170 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
71191 ATGTATCGATACAT
1 ATGTATCGATACAT
71205 TTCTTGGCAG
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 16 0.35
21 30 0.65
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:71162 original size:41 final size:41
Alignment explanation
Indices: 71111--71204 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
71101 ACAATTCAAA
71111 GTATCGATACATATTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATATTGCAATGTATCGATACATGAAAAAGAT
*
71152 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATATTGCAATGTATCGATACATGAAAAAGAT
71193 GTATCGATACAT
1 GTATCGATACAT
71205 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (41 bp):
GTATCGATACATATTGCAATGTATCGATACATGAAAAAGAT
Found at i:71184 original size:20 final size:20
Alignment explanation
Indices: 71111--71184 Score: 94
Period size: 20 Copynumber: 3.6 Consensus size: 20
71101 ACAATTCAAA
*
71111 GTATCGATACATATTGCAAT
1 GTATCGATACATGTTGCAAT
****
71131 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
71152 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
71172 GTATCGATACATG
1 GTATCGATACATG
71185 AAAAAGATGT
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:71261 original size:13 final size:13
Alignment explanation
Indices: 71243--71268 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
71233 TACAGCAAGT
71243 ATGTATCGATACA
1 ATGTATCGATACA
71256 ATGTATCGATACA
1 ATGTATCGATACA
71269 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:74972 original size:20 final size:21
Alignment explanation
Indices: 74925--74977 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
74915 GCCAATGACC
*
74925 TGTATCGATACATTCTTTACA
1 TGTATCGATACATTCTGTACA
*
74946 AGTATCGATACATT-TGGT-CA
1 TGTATCGATACATTCT-GTACA
74966 TGTATCGATACA
1 TGTATCGATACA
74978 ATGTATCGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (21 bp):
TGTATCGATACATTCTGTACA
Found at i:74983 original size:13 final size:13
Alignment explanation
Indices: 74965--74989 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74955 ACATTTGGTC
74965 ATGTATCGATACA
1 ATGTATCGATACA
74978 ATGTATCGATAC
1 ATGTATCGATAC
74990 TGTGCAATCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:75381 original size:30 final size:30
Alignment explanation
Indices: 75309--75864 Score: 170
Period size: 30 Copynumber: 18.4 Consensus size: 30
75299 AAAGACCTTT
*
75309 CTTATTTGACTGTATTCAGTCAAATTTTAGC
1 CTTATTTGACTGTATTCAGTCAAATTTT-TC
** *
75340 CTTGCTTGACTGTATTCAGTCAAGTTTTTC
1 CTTATTTGACTGTATTCAGTCAAATTTTTC
* *
75370 CTTATTTGACTGTACTTGA-TCAAATCTTATC
1 CTTATTTGACTGTA-TTCAGTCAAAT-TTTTC
* * * * ***
75401 CCT-CTTGACTGTAATCGGTCAAAACCTTC
1 CTTATTTGACTGTATTCAGTCAAATTTTTC
* * * **
75430 CTCATTTAACTATATTC-GATCAAATTTCACC
1 CTTATTTGACTGTATTCAG-TCAAATTT-TTC
** * * *
75461 CTTGCTTGACTATATTCCGT-AAAGTCTTTC
1 CTTATTTGACTGTATTCAGTCAAA-TTTTTC
* * * **
75491 CTCATTTGACTATAGTT-AGTTAAATCTTACC
1 CTTATTTGACTGTA-TTCAGTCAAAT-TTTTC
* * * **
75522 CCT-CTTGATTGTATTC-GATCAAGA-CCTTC
1 CTTATTTGACTGTATTCAG-TCAA-ATTTTTC
* * * * *
75551 CTCATTTCACTATATTCGGTCAAATTTTACC
1 CTTATTTGACTGTATTCAGTCAAATTTT-TC
** *
75582 CTTGCTTGACTGTATTCAGTCAAGTTTTTC
1 CTTATTTGACTGTATTCAGTCAAATTTTTC
* * * *
75612 CTTATTTGAATGTACTC-GATCAAATCTTAC
1 CTTATTTGACTGTATTCAG-TCAAATTTTTC
** * * **
75642 CCCACTTGATTGTATTC-GATCAAGA-CCTTC
1 CTTATTTGACTGTATTCAG-TCAA-ATTTTTC
* **
75672 CTTATTTGATTGTATT-AGGTCAAATTTCACC
1 CTTATTTGACTGTATTCA-GTCAAATTT-TTC
* *
75703 CTTGTTTGACTGTATTCAGTCAATTTTTTC
1 CTTATTTGACTGTATTCAGTCAAATTTTTC
* * **
75733 CTTATTTGACTATACTCAGTCAAATCTTACC
1 CTTATTTGACTGTATTCAGTCAAAT-TTTTC
* * **
75764 CTT-CTTGATTGTATTC-GATCAAGA-CCTTC
1 CTTATTTGACTGTATTCAG-TCAA-ATTTTTC
* * * **
75793 CTTATTTGGCTGTATTCGGTTAAATTTCACC
1 CTTATTTGACTGTATTCAGTCAAATTT-TTC
** * *
75824 CTTGCTTGACTGTATTCAATCAAGTTTTTC
1 CTTATTTGACTGTATTCAGTCAAATTTTTC
75854 CTTATTTGACT
1 CTTATTTGACT
75865 ATACTCGATC
Statistics
Matches: 364, Mismatches: 129, Indels: 65
0.65 0.23 0.12
Matches are distributed among these distances:
29 19 0.05
30 206 0.57
31 137 0.38
32 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.12, T:0.43
Consensus pattern (30 bp):
CTTATTTGACTGTATTCAGTCAAATTTTTC
Found at i:75517 original size:121 final size:121
Alignment explanation
Indices: 75300--76265 Score: 927
Period size: 121 Copynumber: 8.0 Consensus size: 121
75290 GATCCTAACA
* * * * * *
75300 AAGACCTTTCTTATTTGACTGTATTCAGTCAAATTTTAGCCTTGCTTGACTGTATTCAGTCAAGT
1 AAGACCTTCCTTATTTAACTATATTCGGTCAAATTTCACCCTTGCTTGACTGTATTCAGTCAAGT
* * * *
75365 TTTTCCTTATTTGACTGTACTTGATCAAATCTTATCCCTCTTGACTGTAATCGGTC
66 TTTTCCTTATTTGACTATACTTGATCAAATCTTATCCCTCTTGATTGTATTCGATC
* * * * * *
75421 AAAACCTTCCTCATTTAACTATATTCGATCAAATTTCACCCTTGCTTGACTATATTCCGTAAAGT
1 AAGACCTTCCTTATTTAACTATATTCGGTCAAATTTCACCCTTGCTTGACTGTATTCAGTCAAGT
* * * * *
75486 CTTTCCTCATTTGACTATAGTT-AGTTAAATCTTACCCCTCTTGATTGTATTCGATC
66 TTTTCCTTATTTGACTATACTTGA-TCAAATCTTATCCCTCTTGATTGTATTCGATC
* * *
75542 AAGACCTTCCTCATTTCACTATATTCGGTCAAATTTTACCCTTGCTTGACTGTATTCAGTCAAGT
1 AAGACCTTCCTTATTTAACTATATTCGGTCAAATTTCACCCTTGCTTGACTGTATTCAGTCAAGT
* * * * *
75607 TTTTCCTTATTTGAATGTACTCGATCAAATCTTACCCCACTTGATTGTATTCGATC
66 TTTTCCTTATTTGACTATACTTGATCAAATCTTATCCCTCTTGATTGTATTCGATC
* * * * * *
75663 AAGACCTTCCTTATTTGATTGTATTAGGTCAAATTTCACCCTTGTTTGACTGTATTCAGTCAATT
1 AAGACCTTCCTTATTTAACTATATTCGGTCAAATTTCACCCTTGCTTGACTGTATTCAGTCAAGT
*
75728 TTTTCCTTATTTGACTATAC-TCAGTCAAATCTTA-CCCTTCTTGATTGTATTCGATC
66 TTTTCCTTATTTGACTATACTTGA-TCAAATCTTATCCC-TCTTGATTGTATTCGATC
** * * *
75784 AAGACCTTCCTTATTTGGCTGTATTCGGTTAAATTTCACCCTTGCTTGACTGTATTCAATCAAGT
1 AAGACCTTCCTTATTTAACTATATTCGGTCAAATTTCACCCTTGCTTGACTGTATTCAGTCAAGT
* *
75849 TTTTCCTTATTTGACTATACTCGATCAAATCTT-TCCCCTCTTAATTGTATTCGATC
66 TTTTCCTTATTTGACTATACTTGATCAAATCTTAT-CCCTCTTGATTGTATTCGATC
* * * *
75905 AAGATCTTCTTTATTTAACTATATTCGGTCAAATTTC-CCCATCGCTTGACTATATTCAGTCAAG
1 AAGACCTTCCTTATTTAACTATATTCGGTCAAATTTCACCC-TTGCTTGACTGTATTCAGTCAAG
** * * * * * * *
75969 ACTATCCTCATTTGACTATACTCTG-TCAAATCTTATCCTTATTGATTGTATTTGGTT
65 TTTTTCCTTATTTGACTATACT-TGATCAAATCTTATCCCTCTTGATTGTATTCGATC
* * * * * * * * *
76026 AAGA-TTATCCTCATTTGACTGTTTTCAGTCAAATCTT-ACCCCT-CTTGACTATATTCATTCAA
1 AAGACCT-TCCTTATTTAACTATATTCGGTCAAAT-TTCACCCTTGCTTGACTGTATTCAGTCAA
** * * * * * * *
76088 GACTATCCTTGTTTAACTATACTTGATCAAATCTTA-CCCTGTTCGACTATATTCTATC
64 GTTTTTCCTTATTTGACTATACTTGATCAAATCTTATCCCTCTT-GATTGTATTCGATC
** * ** * * * * *
76146 AAG-TTTTTCTTCATTCGACTATACTCGATCTAATCTT-ACCC-TGTTTGACTGTATT-TGATCA
1 AAGACCTTCCTT-ATTTAACTATATTCGGTCAAAT-TTCACCCTTGCTTGACTGTATTCAG-TCA
* * *
76207 AGTCTTT-CTTCATTTGACTATACTTGATCAAATCTTATCTCGCTTGATTGTATTCGATC
63 AGTTTTTCCTT-ATTTGACTATACTTGATCAAATCTTATCCCTCTTGATTGTATTCGATC
76266 GAGCTATTCT
Statistics
Matches: 701, Mismatches: 123, Indels: 43
0.81 0.14 0.05
Matches are distributed among these distances:
119 14 0.02
120 145 0.21
121 530 0.76
122 12 0.02
ACGTcount: A:0.24, C:0.22, G:0.11, T:0.43
Consensus pattern (121 bp):
AAGACCTTCCTTATTTAACTATATTCGGTCAAATTTCACCCTTGCTTGACTGTATTCAGTCAAGT
TTTTCCTTATTTGACTATACTTGATCAAATCTTATCCCTCTTGATTGTATTCGATC
Found at i:75742 original size:242 final size:242
Alignment explanation
Indices: 75300--76265 Score: 1029
Period size: 242 Copynumber: 4.0 Consensus size: 242
75290 GATCCTAACA
* * *
75300 AAGACCTTTCTTATTTGACTGTATTCAGTCAAATTTTAGCCTTGCTTGACTGTATTCAGTCAAGT
1 AAGACCTTCCTCATTTGACTGTATTCAGTCAAATTTTACCCTTGCTTGACTGTATTCAGTCAAGT
* * * * * * * *
75365 TTTTCCTTATTTGACTGTACTTGATCAAATCTTATCCCTCTTGACTGTAATCGGTCAAAACCTTC
66 TTTTCCTTATTTGAATATACTCGATCAAATCTTACCCCTCTTGATTGTATTCGATCAAGACCTTC
* * * *
75430 CTCATTTAACTATATTCGATCAAATTTCACCCTTGCTTGACTATATTCCGTAAAGTCTTTCCTCA
131 CTTATTTAACTATATTCGGTCAAATTTCACCCTTGCTTGACTATATTCAGTCAAGTCTTTCCTCA
* * *
75495 TTTGACTATAGTTAGTTAAATCTTACCCCTCTTGATTGTATTCGATC
196 TTTGACTATACTTAGTCAAATCTTACCCTTCTTGATTGTATTCGATC
* * *
75542 AAGACCTTCCTCATTTCACTATATTCGGTCAAATTTTACCCTTGCTTGACTGTATTCAGTCAAGT
1 AAGACCTTCCTCATTTGACTGTATTCAGTCAAATTTTACCCTTGCTTGACTGTATTCAGTCAAGT
* *
75607 TTTTCCTTATTTGAATGTACTCGATCAAATCTTACCCCACTTGATTGTATTCGATCAAGACCTTC
66 TTTTCCTTATTTGAATATACTCGATCAAATCTTACCCCTCTTGATTGTATTCGATCAAGACCTTC
* * * * * * * * *
75672 CTTATTTGATTGTATTAGGTCAAATTTCACCCTTGTTTGACTGTATTCAGTCAATTTTTTCCTTA
131 CTTATTTAACTATATTCGGTCAAATTTCACCCTTGCTTGACTATATTCAGTCAAGTCTTTCCTCA
*
75737 TTTGACTATACTCAGTCAAATCTTACCCTTCTTGATTGTATTCGATC
196 TTTGACTATACTTAGTCAAATCTTACCCTTCTTGATTGTATTCGATC
* * * * * *
75784 AAGACCTTCCTTATTTGGCTGTATTCGGTTAAATTTCACCCTTGCTTGACTGTATTCAATCAAGT
1 AAGACCTTCCTCATTTGACTGTATTCAGTCAAATTTTACCCTTGCTTGACTGTATTCAGTCAAGT
* * * *
75849 TTTTCCTTATTTGACTATACTCGATCAAATCTTTCCCCTCTTAATTGTATTCGATCAAGATCTTC
66 TTTTCCTTATTTGAATATACTCGATCAAATCTTACCCCTCTTGATTGTATTCGATCAAGACCTTC
* * * *
75914 TTTATTTAACTATATTCGGTCAAATTTC-CCCATCGCTTGACTATATTCAGTCAAGACTATCCTC
131 CTTATTTAACTATATTCGGTCAAATTTCACCC-TTGCTTGACTATATTCAGTCAAGTCTTTCCTC
* * * * *
75978 ATTTGACTATACTCT-GTCAAATCTTATCCTTATTGATTGTATTTGGTT
195 ATTTGACTATACT-TAGTCAAATCTTACCCTTCTTGATTGTATTCGATC
* * * * * *
76026 AAGA-TTATCCTCATTTGACTGTTTTCAGTCAAATCTTACCCCT-CTTGACTATATTCATTCAAG
1 AAGACCT-TCCTCATTTGACTGTATTCAGTCAAATTTTACCCTTGCTTGACTGTATTCAGTCAAG
** * * * * * * * **
76089 ACTATCCTTGTTT-AACTATACTTGATCAAATCTTA-CCCTGTTCGACTATATTCTATCAAG-TT
65 TTTTTCCTTATTTGAA-TATACTCGATCAAATCTTACCCCTCTT-GATTGTATTCGATCAAGACC
* ** * * * * * *
76151 TTTCTTCATTCGACTATACTCGATCTAATCTT-ACCC-TGTTTGACTGTATT-TGATCAAGTCTT
128 TTCCTT-ATTTAACTATATTCGGTCAAAT-TTCACCCTTGCTTGACTATATTCAG-TCAAGTCTT
* * *
76213 TCTTCATTTGACTATACTT-GATCAAATCTTA-TCTCGCTTGATTGTATTCGATC
190 TCCTCATTTGACTATACTTAG-TCAAATCTTACCCT-TCTTGATTGTATTCGATC
76266 GAGCTATTCT
Statistics
Matches: 606, Mismatches: 107, Indels: 24
0.82 0.15 0.03
Matches are distributed among these distances:
239 5 0.01
240 70 0.12
241 78 0.13
242 453 0.75
ACGTcount: A:0.24, C:0.22, G:0.11, T:0.43
Consensus pattern (242 bp):
AAGACCTTCCTCATTTGACTGTATTCAGTCAAATTTTACCCTTGCTTGACTGTATTCAGTCAAGT
TTTTCCTTATTTGAATATACTCGATCAAATCTTACCCCTCTTGATTGTATTCGATCAAGACCTTC
CTTATTTAACTATATTCGGTCAAATTTCACCCTTGCTTGACTATATTCAGTCAAGTCTTTCCTCA
TTTGACTATACTTAGTCAAATCTTACCCTTCTTGATTGTATTCGATC
Found at i:75986 original size:30 final size:30
Alignment explanation
Indices: 75950--76096 Score: 97
Period size: 30 Copynumber: 4.9 Consensus size: 30
75940 TCCCCATCGC
75950 TTGACTATATTCAGTCAAGACTATCCTCAT
1 TTGACTATATTCAGTCAAGACTATCCTCAT
* * *
75980 TTGACTATACTCTGTCAA-ATCTTATCCTTA-
1 TTGACTATATTCAGTCAAGA-C-TATCCTCAT
* * ** * *
76010 TTGATTGTATTTGGTTAAGATTATCCTCAT
1 TTGACTATATTCAGTCAAGACTATCCTCAT
* * *
76040 TTGACTGTTTTCAGTCAA-ATCT-TACC-CCT
1 TTGACTATATTCAGTCAAGA-CTAT-CCTCAT
*
76069 CTTGACTATATTCATTCAAGACTATCCT
1 -TTGACTATATTCAGTCAAGACTATCCT
76097 TGTTTAACTA
Statistics
Matches: 86, Mismatches: 21, Indels: 19
0.68 0.17 0.15
Matches are distributed among these distances:
29 12 0.14
30 64 0.74
31 10 0.12
ACGTcount: A:0.26, C:0.22, G:0.10, T:0.42
Consensus pattern (30 bp):
TTGACTATATTCAGTCAAGACTATCCTCAT
Found at i:76137 original size:30 final size:30
Alignment explanation
Indices: 76103--76243 Score: 92
Period size: 30 Copynumber: 4.7 Consensus size: 30
76093 TCCTTGTTTA
76103 ACTATACTTGATCAAATCTTACCCTGTTCG
1 ACTATACTTGATCAAATCTTACCCTGTTCG
* * ** * *
76133 ACTATA-TTCTATCAAGT-TTTTCTTCATTCG
1 ACTATACTT-GATCAAATCTTACCCT-GTTCG
* * *
76163 ACTATACTCGATCTAATCTTACCCTGTTTG
1 ACTATACTTGATCAAATCTTACCCTGTTCG
* * * * *
76193 ACTGTATTTGATCAAGTCTTTCTTCAT-TT-G
1 ACTATACTTGATCAAATCTTAC--CCTGTTCG
76223 ACTATACTTGATCAAATCTTA
1 ACTATACTTGATCAAATCTTA
76244 TCTCGCTTGA
Statistics
Matches: 79, Mismatches: 26, Indels: 12
0.68 0.22 0.10
Matches are distributed among these distances:
29 6 0.08
30 64 0.81
31 7 0.09
32 2 0.03
ACGTcount: A:0.26, C:0.22, G:0.09, T:0.43
Consensus pattern (30 bp):
ACTATACTTGATCAAATCTTACCCTGTTCG
Found at i:76259 original size:60 final size:60
Alignment explanation
Indices: 75343--76279 Score: 449
Period size: 60 Copynumber: 15.5 Consensus size: 60
75333 TTTTAGCCTT
* * *
75343 GCTTGACTGTATTC-AGTCAAGTTTTTCCTT-ATTTGACTGTACTTGATCAAATCTTATCCC
1 GCTTGACTGTATTCGA-TCAAGTCTTT-CTTCATTTGACTATACTTGATCAAATCTTACCCC
* * * ** * * * *
75403 TCTTGACTGTAATCGGTCAAAACCTTCCTCATTTAACTATA-TTCGATCAAAT-TTCACCCTT
1 GCTTGACTGTATTCGATCAAGTCTTTCTTCATTTGACTATACTT-GATCAAATCTT-ACCC-C
* * * * *
75464 GCTTGACTATATTCCG-TAAAGTCTTTCCTCATTTGACTATAGTT-AGTTAAATCTTACCCC
1 GCTTGACTGTATT-CGATCAAGTCTTTCTTCATTTGACTATACTTGA-TCAAATCTTACCCC
* * * * * * * * *
75524 TCTTGATTGTATTCGATCAAGACCTTCCTCATTTCACTATA-TTCGGTCAAATTTTACCCTT
1 GCTTGACTGTATTCGATCAAGTCTTTCTTCATTTGACTATACTT-GATCAAATCTTACCC-C
* * * *
75585 GCTTGACTGTATTC-AGTCAAGTTTTTCCTT-ATTTGAATGTACTCGATCAAATCTTACCCC
1 GCTTGACTGTATTCGA-TCAAGTCTTT-CTTCATTTGACTATACTTGATCAAATCTTACCCC
* * * * * * * *
75645 ACTTGATTGTATTCGATCAAGACCTTCCTT-ATTTGATTGTA-TTAGGTCAAAT-TTCACCCTT
1 GCTTGACTGTATTCGATCAAG-TCTTTCTTCATTTGACTATACTT-GATCAAATCTT-ACCC-C
* * * * *
75706 GTTTGACTGTATTC-AGTCAATTTTTTCCTT-ATTTGACTATAC-TCAGTCAAATCTTACCCT
1 GCTTGACTGTATTCGA-TCAAGTCTTT-CTTCATTTGACTATACTTGA-TCAAATCTTACCCC
* * * * * * * * *
75766 TCTTGATTGTATTCGATCAAGACCTTCCTT-ATTTGGCTGTA-TTCGGTTAAAT-TTCACCCTT
1 GCTTGACTGTATTCGATCAAG-TCTTTCTTCATTTGACTATACTT-GATCAAATCTT-ACCC-C
* * * *
75827 GCTTGACTGTATTCAATCAAGTTTTTCCTT-ATTTGACTATACTCGATCAAATCTTTCCCC
1 GCTTGACTGTATTCGATCAAGTCTTT-CTTCATTTGACTATACTTGATCAAATCTTACCCC
* * * * * * *
75887 TCTTAATTGTATTCGATCAAGATC-TTCTTTATTTAACTATA-TTCGGTCAAAT-TTCCCCATC
1 GCTTGACTGTATTCGATCAAG-TCTTTCTTCATTTGACTATACTT-GATCAAATCTTACCC--C
* * * * * *
75948 GCTTGACTATATTC-AGTCAAGACTATCCTCATTTGACTATACTCTG-TCAAATCTTATCCT
1 GCTTGACTGTATTCGA-TCAAGTCTTTCTTCATTTGACTATACT-TGATCAAATCTTACCCC
** * * * * * * * * *
76008 TATTGATTGTATTTGGTTAAGAT-TATCCTCATTTGACTGT-TTTCAGTCAAATCTTACCCC
1 GCTTGACTGTATTCGATCAAG-TCTTTCTTCATTTGACTATACTTGA-TCAAATCTTACCCC
* * * * * * *
76068 TCTTGACTATATTC-ATTCAAGACTATCCTT-GTTTAACTATACTTGATCAAATCTTACCCT
1 GCTTGACTGTATTCGA-TCAAGTCT-TTCTTCATTTGACTATACTTGATCAAATCTTACCCC
* * * * * * *
76128 G-TTCGACTATATTCTATCAAGTTTTTCTTCATTCGACTATACTCGATCTAATCTTACCCT
1 GCTT-GACTGTATTCGATCAAGTCTTTCTTCATTTGACTATACTTGATCAAATCTTACCCC
* * * *
76188 GTTTGACTGTATTTGATCAAGTCTTTCTTCATTTGACTATACTTGATCAAATCTTATCTC
1 GCTTGACTGTATTCGATCAAGTCTTTCTTCATTTGACTATACTTGATCAAATCTTACCCC
* *
76248 GCTTGATTGTATTCGATCGAG-CTATTCTTCAT
1 GCTTGACTGTATTCGATCAAGTCT-TTCTTCAT
76280 CTGCCTATCA
Statistics
Matches: 655, Mismatches: 164, Indels: 116
0.70 0.18 0.12
Matches are distributed among these distances:
58 1 0.00
59 33 0.05
60 393 0.60
61 207 0.32
62 20 0.03
63 1 0.00
ACGTcount: A:0.24, C:0.22, G:0.11, T:0.42
Consensus pattern (60 bp):
GCTTGACTGTATTCGATCAAGTCTTTCTTCATTTGACTATACTTGATCAAATCTTACCCC
Found at i:77585 original size:169 final size:168
Alignment explanation
Indices: 77346--77840 Score: 545
Period size: 169 Copynumber: 3.0 Consensus size: 168
77336 ATTTCTCTTG
* * ** * * **
77346 TTTTCAAATTACGGAATTTTCTTCTCCATAAATTTTTTGGAAGGAT-TTGTTTTTTTGTTTTTAA
1 TTTTCAAAATACGGAATTTTCTACTCTGTAAATTTTTTGGAGGGATATT-TTTCTTAATTTTTAA
* * * *
77410 TTTTTAAAATTCATCAAATATTATTAGTTAATCCGTATTAGATTAGTTTTTAAAAATTCATTCAT
65 TTTTTAAAATTCATCAAATATTATTATTTAATTCATATTAAATTAGTTTTTAAAAATTCATTCAT
*
77475 ATTCATAAATTTTTGAATTTTTTCCTTGAAACTCATTT-
130 TTTCATAAATTTTTGAATTTTTTCCTTGAAACTCATTTA
* *
77513 TTTTCTTAAATACGGAATTTTCTACTCTGTAAATGTTTGTGGAGGGATATTTTTCTTAATTTTTA
1 TTTTC-AAAATACGGAATTTTCTACTCTGTAAAT-TTTTTGGAGGGATATTTTTCTTAATTTTTA
* * *
77578 ATTTTTAAAATTCATCAAATATTATTATTTAATTTATATTAAATCAGTTTTCAAAAATT-ATTTC
64 ATTTTTAAAATTCATCAAATATTATTATTTAATTCATATTAAATTAGTTTTTAAAAATTCA-TTC
*** * * **
77642 ATTTTCATGGGTTATTGAATTCTTTT-CTTGAAATTTTTTTA
128 ATTTTCATAAATTTTTGAATT-TTTTCCTTGAAACTCATTTA
* * * * * **
77683 TTTTCAAAAAATGGAGTTTTCTACTCTGTAAATTTTTTGG-GAGAGATTTTTCTTGTTTTTTAAT
1 TTTTCAAAATACGGAATTTTCTACTCTGTAAATTTTTTGGAGGGATATTTTTCTTAATTTTTAAT
* * *
77747 TTTTAAAATTCATTAAATACTATTATTTAATTCACATTAAATTA-TTTTTAAAAAATTCATTCAT
66 TTTTAAAATTCATCAAATATTATTATTTAATTCATATTAAATTAGTTTTT-AAAAATTCATTCAT
** *
77811 TTTCATTCATTTTTG-ATTTTTTCTTTGAAA
130 TTTCATAAATTTTTGAATTTTTTCCTTGAAA
77841 TCCCCATATT
Statistics
Matches: 274, Mismatches: 45, Indels: 19
0.81 0.13 0.06
Matches are distributed among these distances:
165 4 0.01
166 13 0.05
167 87 0.32
168 31 0.11
169 128 0.47
170 11 0.04
ACGTcount: A:0.30, C:0.09, G:0.08, T:0.52
Consensus pattern (168 bp):
TTTTCAAAATACGGAATTTTCTACTCTGTAAATTTTTTGGAGGGATATTTTTCTTAATTTTTAAT
TTTTAAAATTCATCAAATATTATTATTTAATTCATATTAAATTAGTTTTTAAAAATTCATTCATT
TTCATAAATTTTTGAATTTTTTCCTTGAAACTCATTTA
Found at i:80341 original size:154 final size:149
Alignment explanation
Indices: 80007--80295 Score: 352
Period size: 149 Copynumber: 1.9 Consensus size: 149
79997 ATTTCATTCA
* * * *
80007 TTTTTCAAGCCCTTTAGGGGTATCGGATACTTTTATGTCGAAAGTATCCCCTAGGTATTTTTGTA
1 TTTTTCAGGTCCTTTAGGGGTATCGGATACTTCTATGTCGAAAGTATCCCCTAGGCATTTTTGTA
***
80072 TTTTTCTAGAATCAGTCCTAGGTTATCACAAGGTTTGCTTTATGCCAAAGGTGGATATTTAGGAT
66 TTTTTCTAGAATCAGTCCTAGGTTATCACAAGGTCCACTTTATGCCAAAGGTGGATATTTAGGAT
*
80137 AGGTTCACCCATCTAAATC
131 AGATTCACCCATCTAAATC
*
80156 TTTTTCAGGTCCTTTAGGGGTATCGGATACTTCTATGT-TAAAGGTATCCCCTAAGGGCA-TTTT
1 TTTTTCAGGTCCTTTAGGGGTATCGGATACTTCTATGTCGAAA-GTATCCCCT-A-GGCATTTTT
* ** ** *
80219 GTAATTTTT-TAGAATCGAGTCTTAGGTTATCACCGGGTCCACTTTTCATGCTGAAGGTGGGTA-
63 GT-ATTTTTCTAGAATC-AGTCCTAGGTTATCACAAGGTCCAC-TTT-ATGCCAAAGGTGGATAT
80282 TTAGGATAGATTCA
124 TTAGGATAGATTCA
80296 TCCTTTTTAA
Statistics
Matches: 118, Mismatches: 15, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
148 3 0.03
149 44 0.37
150 14 0.12
151 28 0.24
152 16 0.14
153 13 0.11
ACGTcount: A:0.24, C:0.17, G:0.21, T:0.38
Consensus pattern (149 bp):
TTTTTCAGGTCCTTTAGGGGTATCGGATACTTCTATGTCGAAAGTATCCCCTAGGCATTTTTGTA
TTTTTCTAGAATCAGTCCTAGGTTATCACAAGGTCCACTTTATGCCAAAGGTGGATATTTAGGAT
AGATTCACCCATCTAAATC
Found at i:82892 original size:33 final size:32
Alignment explanation
Indices: 82850--82911 Score: 106
Period size: 33 Copynumber: 1.9 Consensus size: 32
82840 CACACCGAGA
82850 TGTATCGATACATGTTGCTTAGTATCGATATAT
1 TGTATCGATACATGTT-CTTAGTATCGATATAT
*
82883 TGTATCGATACATGTTCTTTGTATCGATA
1 TGTATCGATACATGTTCTTAGTATCGATA
82912 CACCATGAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
32 12 0.43
33 16 0.57
ACGTcount: A:0.26, C:0.13, G:0.18, T:0.44
Consensus pattern (32 bp):
TGTATCGATACATGTTCTTAGTATCGATATAT
Found at i:83725 original size:20 final size:20
Alignment explanation
Indices: 83700--83774 Score: 96
Period size: 20 Copynumber: 3.8 Consensus size: 20
83690 TTTTACCCAG
*
83700 ATGTATCGATACTTTTTTCA
1 ATGTATCGATACATTTTTCA
* * *
83720 ATGTATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
*
83740 ATGTATCGATGCATTTTTCA
1 ATGTATCGATACATTTTTCA
*
83760 ATGTATCAATACATT
1 ATGTATCGATACATT
83775 CTATTTTTTT
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.31, C:0.13, G:0.13, T:0.43
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:85611 original size:78 final size:79
Alignment explanation
Indices: 85454--85867 Score: 283
Period size: 79 Copynumber: 5.2 Consensus size: 79
85444 AAATTTAATA
* * * * * * * *
85454 TTTTAGAGATAAAAAT-GAGGTCAGAGTA-CTTGCTCAGAAATAATGGGGTTAGAGTATTCCCAA
1 TTTTAGA-AAAAAAATCGAGGTCGGAGTATCCT-CTCGGAAATAACGGGGTTGGAGTATCCCCGA
** * *
85517 TGGTGGAAAATTGATG
64 TTATGAAAAATCGATG
85533 TTTT-GAAAAAAAATCGAGGTCGGAGTATCCTCTCGGAAATAACGGGGTTGGAGTATCCCCGATT
1 TTTTAGAAAAAAAATCGAGGTCGGAGTATCCTCTCGGAAATAACGGGGTTGGAGTATCCCCGATT
*
85597 ATGAAATATCGATG
66 ATGAAAAATCGATG
* * * * * * *
85611 TTTTAGAAATAAAA-CCAGGGTTGGAATATTGCC-AT-GGAAATAACAGGGTTGGAGTATCCTCG
1 TTTTAGAAAAAAAATCGA-GGTCGGAGTA-T-CCTCTCGGAAATAACGGGGTTGGAGTATCCCCG
* *
85673 ATTATGAAATATTGATG
63 ATTATGAAAAATCGATG
* ** * * * *
85690 TTTTAGAAATAAAGCCGGGGGT-GGAGTATCCTCTCGAAAATAACGGGGTTGGAGTGTCCCCGAC
1 TTTTAGAAAAAAAATC-GAGGTCGGAGTATCCTCTCGGAAATAACGGGGTTGGAGTATCCCCGAT
*
85754 TATAAAAAATC-AGTG
65 TATGAAAAATCGA-TG
* * * *** *
85769 TTTTAGGAATAAAAA-CTAGGGTTGGAGTATACC-CTAAAAAATAACGAGGTTGGAGTATCCCCG
1 TTTTA-GAAAAAAAATCGA-GGTCGGAGTAT-CCTCTCGGAAATAACGGGGTTGGAGTATCCCCG
* *
85832 ATTGTGAAAAAT-TAGTG
63 ATTATGAAAAATCGA-TG
* *
85849 TTTTGGAAACAAAATCGAG
1 TTTTAGAAAAAAAATCGAG
85868 ATTGAAGTAT
Statistics
Matches: 268, Mismatches: 50, Indels: 34
0.76 0.14 0.10
Matches are distributed among these distances:
77 9 0.03
78 59 0.22
79 132 0.49
80 64 0.24
81 4 0.01
ACGTcount: A:0.35, C:0.12, G:0.25, T:0.28
Consensus pattern (79 bp):
TTTTAGAAAAAAAATCGAGGTCGGAGTATCCTCTCGGAAATAACGGGGTTGGAGTATCCCCGATT
ATGAAAAATCGATG
Found at i:85660 original size:79 final size:78
Alignment explanation
Indices: 85529--85840 Score: 308
Period size: 79 Copynumber: 3.9 Consensus size: 78
85519 GTGGAAAATT
* * * * *
85529 GATGTTTT-GAAAAAAAATC-GAGGTCGGAGTATCCTCTCGGAAATAACGGGGTTGGAGTATCCC
1 GATGTTTTAGAAATAAAACCAG-GGTTGGAGTATCC-CTAGAAAATAACGGGGTTGGAGTATCCC
85592 CGATTATGAAATATC
64 CGATTATGAAATATC
* * * * *
85607 GATGTTTTAGAAATAAAACCAGGGTTGGAATATTGCC-ATGGAAATAACAGGGTTGGAGTATCCT
1 GATGTTTTAGAAATAAAACCAGGGTTGGAGTA-TCCCTA-GAAAATAACGGGGTTGGAGTATCCC
*
85671 CGATTATGAAATATT
64 CGATTATGAAATATC
* * * * *
85686 GATGTTTTAGAAATAAAGCCGGGGGTGGAGTATCCTCTCGAAAATAACGGGGTTGGAGTGTCCCC
1 GATGTTTTAGAAATAAAACCAGGGTTGGAGTATCC-CTAGAAAATAACGGGGTTGGAGTATCCCC
* * *
85751 GACTATAAAAAATC
65 GATTATGAAATATC
* * * *
85765 -AGTGTTTTAGGAATAAAAACTAGGGTTGGAGTATACCCTAAAAAATAACGAGGTTGGAGTATCC
1 GA-TGTTTTAGAAAT-AAAACCAGGGTTGGAGTAT-CCCTAGAAAATAACGGGGTTGGAGTATCC
*
85829 CCGATTGTGAAA
63 CCGATTATGAAA
85841 AATTAGTGTT
Statistics
Matches: 190, Mismatches: 35, Indels: 16
0.79 0.15 0.07
Matches are distributed among these distances:
78 11 0.06
79 127 0.67
80 50 0.26
81 2 0.01
ACGTcount: A:0.34, C:0.13, G:0.26, T:0.27
Consensus pattern (78 bp):
GATGTTTTAGAAATAAAACCAGGGTTGGAGTATCCCTAGAAAATAACGGGGTTGGAGTATCCCCG
ATTATGAAATATC
Found at i:85877 original size:159 final size:157
Alignment explanation
Indices: 85491--85891 Score: 416
Period size: 159 Copynumber: 2.5 Consensus size: 157
85481 ACTTGCTCAG
* * * * * * * *
85491 AAATAATGGGGTTAGAGTATTCCCAATGGTGGAAAATTGATGTTTTGAAAAAAAATCGAGGTCGG
1 AAATAACGAGGTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTGAAAAAAAATCGAGGTTGG
* * * *
85556 AGTATCCTCTCGGAAATAACGGGGTTGGAGTATCCCCGATTATGAAATATCGATGTTTTAGAAAT
66 AGTATCCTCTCGAAAATAACGGGGTTGGAGTATCCCCGACTATAAAAAATCGATGTTTTAGAAAT
** **
85621 AAAACCAGGGTTGGAATATTGCCATGG
131 AAAACCAGGGTTGGAATATACCCATAA
* * * * ** * *
85648 AAATAAC-AGGGTTGGAGTATCCTCGATTATGAAATATTGATGTTTTAGAAATAAAGCCGGGGGT
1 AAATAACGA-GGTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTT-GAAAAAAAATCGAGGTT
* *
85712 GGAGTATCCTCTCGAAAATAACGGGGTTGGAGTGTCCCCGACTATAAAAAATC-AGTGTTTTAGG
64 GGAGTATCCTCTCGAAAATAACGGGGTTGGAGTATCCCCGACTATAAAAAATCGA-TGTTTTAGA
* *
85776 AATAAAAACTAGGGTTGGAGTATACCC-TAAA
128 AAT-AAAACCAGGGTTGGAATATACCCAT-AA
* *
85807 AAATAACGAGGTTGGAGTATCCCCGATTGTGAAAAATT-AGTGTTTTGGAAACAAAATCGAGATT
1 AAATAACGAGGTTGGAGTATCCCCGATTGTGAAAAATTGA-TGTTTT-GAAAAAAAATCGAGGTT
*
85871 GAAGTATTCC-CTCGAAAATAA
64 GGAGTA-TCCTCTCGAAAATAA
85892 TAGGGTAGTA
Statistics
Matches: 197, Mismatches: 39, Indels: 14
0.79 0.16 0.06
Matches are distributed among these distances:
157 36 0.18
158 72 0.37
159 85 0.43
160 4 0.02
ACGTcount: A:0.35, C:0.13, G:0.25, T:0.27
Consensus pattern (157 bp):
AAATAACGAGGTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTGAAAAAAAATCGAGGTTGG
AGTATCCTCTCGAAAATAACGGGGTTGGAGTATCCCCGACTATAAAAAATCGATGTTTTAGAAAT
AAAACCAGGGTTGGAATATACCCATAA
Found at i:86074 original size:187 final size:187
Alignment explanation
Indices: 85742--86078 Score: 430
Period size: 187 Copynumber: 1.8 Consensus size: 187
85732 ACGGGGTTGG
*
85742 AGTGTCCCCGACTATAAAAAATCAGTGTTTTAGGAATAAAAACTAGGGTTGGAGTATACCCTAAA
1 AGTGTCCCCGACTATAAAAAATCAGTATTTTAGGAATAAAAACTAGGGTTGGAGTATACCCTAAA
* * * ** *
85807 AAATAACGAGGTTGGAGTATCCCCGATTGTGAAAAATTAGTGTTTTGGAAACAAAATCGAGATTG
66 AAATAACGAGGTAGGACTATCCCCGATGGTGAAAAATTAGTGTTTTAAAAACAAAACCGAGATTG
85872 AAGTATTCCCTCGAAAATAATAGGGTAGTAGTATCTCCTCAAAAATAACAGTGTAAA
131 AAGTATTCCCTCGAAAATAATAGGGTAGTAGTATCTCCTCAAAAATAACAGTGTAAA
* * * * * **
85929 AGTGTCCCCGATTGTGAAAAATCAGTATTTTA-GACGTAAAAACTAGGGTTGGAGTATCCCCTCG
1 AGTGTCCCCGACTATAAAAAATCAGTATTTTAGGA-ATAAAAACTAGGGTTGGAGTATACCCTAA
* * * * * *
85993 GAAATAAC-AGGGTAGGACTATCCCCGATGGTGAAAAATTGGTGTTTTAAAAATAAAGCCGGGGT
65 AAAATAACGA-GGTAGGACTATCCCCGATGGTGAAAAATTAGTGTTTTAAAAACAAAACCGAGAT
86057 T-AGAGTA-TCCTCTCGAAAATAA
129 TGA-AGTATTCC-CTCGAAAATAA
86079 CGGGGTTGGA
Statistics
Matches: 126, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
186 7 0.06
187 119 0.94
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.26
Consensus pattern (187 bp):
AGTGTCCCCGACTATAAAAAATCAGTATTTTAGGAATAAAAACTAGGGTTGGAGTATACCCTAAA
AAATAACGAGGTAGGACTATCCCCGATGGTGAAAAATTAGTGTTTTAAAAACAAAACCGAGATTG
AAGTATTCCCTCGAAAATAATAGGGTAGTAGTATCTCCTCAAAAATAACAGTGTAAA
Found at i:88544 original size:49 final size:50
Alignment explanation
Indices: 88461--88590 Score: 201
Period size: 49 Copynumber: 2.6 Consensus size: 50
88451 AAAATGCCTG
* *
88461 AATGTATCGATACATTG-AGAAATCTATCGATGCATCTGGGTAAAACCCAA
1 AATGTATCGATACAATGAAG-AATGTATCGATGCATCTGGGTAAAACCCAA
* *
88511 AATGTATCGAT-TAATGAAGAATGTATCGATGCATCTGGGTAAAACCCAT
1 AATGTATCGATACAATGAAGAATGTATCGATGCATCTGGGTAAAACCCAA
88560 AATGTATCGATACAATGAAGAATGTATCGAT
1 AATGTATCGATACAATGAAGAATGTATCGAT
88591 ACAAATTGTG
Statistics
Matches: 73, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
49 42 0.58
50 31 0.42
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.28
Consensus pattern (50 bp):
AATGTATCGATACAATGAAGAATGTATCGATGCATCTGGGTAAAACCCAA
Found at i:88837 original size:45 final size:45
Alignment explanation
Indices: 88706--89202 Score: 216
Period size: 41 Copynumber: 11.7 Consensus size: 45
88696 TACACCCTTC
*
88706 TCTTTGAGGAC-AAA-GG-AAA-AAAGAAATAAAGTACGTCCTGT
1 TCTTTGAGGACAAAAGGGAAAAGAAAGAAATAAAGTGCGTCCTGT
*
88747 TCTTTGAGGACAAAA--G-AAA-AAAGAAATAAAGTGCGTCTTGT
1 TCTTTGAGGACAAAAGGGAAAAGAAAGAAATAAAGTGCGTCCTGT
* * * * *
88788 TCTTTAAAGACAAAAGGGAAAAGAAAGAAATGAAGTGCATCCTGC
1 TCTTTGAGGACAAAAGGGAAAAGAAAGAAATAAAGTGCGTCCTGT
* ** **
88833 TCTTTGAGGAC-AAAGGAAAAAGGAAATG-AGGAAAGT--GTCCTAC
1 TCTTTGAGGACAAAAGGGAAAA-GAAA-GAAATAAAGTGCGTCCTGT
* * * * *
88876 TCCTTGAGGTCAAAAGGGAAAA-AAGGAAATGAAATGTGC--CTTGC
1 TCTTTGAGGACAAAAGGGAAAAGAAAGAAAT-AAA-GTGCGTCCTGT
* * * * * **
88920 TCTTTAAGGA-TAAA-GGAAAA-AAGGAAAAAAAAGTGCATCCTAC
1 TCTTTGAGGACAAAAGGGAAAAGAAAG-AAATAAAGTGCGTCCTGT
* * ** *
88963 TCTTTGAGGACAGAAGGGAAAA-AAGGAAATGAAA-TTTGTCCTGC
1 TCTTTGAGGACAAAAGGGAAAAGAAAGAAAT-AAAGTGCGTCCTGT
* * * * *
89007 TCTTTGCGGAC-AAA--GAAGA-AAAG-GA-AAAGT-CATCCTGC
1 TCTTTGAGGACAAAAGGGAAAAGAAAGAAATAAAGTGCGTCCTGT
* * * **
89045 TCTTTGAGGAC-AAAGGGAAAAGAAAGAAATAAGGTGTGCCCTAC
1 TCTTTGAGGACAAAAGGGAAAAGAAAGAAATAAAGTGCGTCCTGT
* * * * **
89089 TCTTTGATGAC-AAA-GG-AAA-AAGGAAATAAATTGCATCCTAC
1 TCTTTGAGGACAAAAGGGAAAAGAAAGAAATAAAGTGCGTCCTGT
* * * * * * *
89130 TCTTTGGGGACAAAAGAGAAAAGAAGGAAATGAAGTGAGTCTTGC
1 TCTTTGAGGACAAAAGGGAAAAGAAAGAAATAAAGTGCGTCCTGT
* *
89175 TCTTCGAGGAC-AAATGGAAAA-AAAGAAA
1 TCTTTGAGGACAAAAGGGAAAAGAAAGAAA
89203 ATGAAATATC
Statistics
Matches: 351, Mismatches: 75, Indels: 58
0.73 0.15 0.12
Matches are distributed among these distances:
38 22 0.06
39 1 0.00
40 5 0.01
41 89 0.25
42 26 0.07
43 51 0.15
44 82 0.23
45 74 0.21
46 1 0.00
ACGTcount: A:0.43, C:0.12, G:0.24, T:0.20
Consensus pattern (45 bp):
TCTTTGAGGACAAAAGGGAAAAGAAAGAAATAAAGTGCGTCCTGT
Found at i:88852 original size:86 final size:86
Alignment explanation
Indices: 88705--89421 Score: 452
Period size: 82 Copynumber: 8.4 Consensus size: 86
88695 TTACACCCTT
* * * *
88705 CTCTTTGAGGAC-AAA-GG-AAA-AAAGAAATAAAGTACGTCCTGTTCTTTGAGGACAAAAGAAA
1 CTCTTTGAGGACAAAAGGGAAAAGAAAGAAATGAAGTGCGTCCTGCTCTTTGAGGACAAAGGAAA
* * *
88766 AAAGAAATAAAGTGCGTCTTG
66 AAAGAAATAAAGTGCATCCTA
* * * *
88787 TTCTTTAAAGACAAAAGGGAAAAGAAAGAAATGAAGTGCATCCTGCTCTTTGAGGACAAAGGAAA
1 CTCTTTGAGGACAAAAGGGAAAAGAAAGAAATGAAGTGCGTCCTGCTCTTTGAGGACAAAGGAAA
*
88852 AAGGAAATGAGGAAAGTG--TCCTA
66 AAAGAAAT----AAAGTGCATCCTA
* * * * * * *
88875 CTCCTTGAGGTCAAAAGGGAAAA-AAGGAAATGAAATGTG-CCTTGCTCTTTAAGGATAAAGGAA
1 CTCTTTGAGGACAAAAGGGAAAAGAAAGAAATGAAGTGCGTCC-TGCTCTTTGAGGACAAAGGAA
*
88938 AAAAGGAAAAAAAAGTGCATCCTA
65 AAAA-G-AAATAAAGTGCATCCTA
* * * ** *
88962 CTCTTTGAGGACAGAAGGGAAAA-AAGGAAATGAAATTTGTCCTGCTCTTTGCGGACAAA-GAAG
1 CTCTTTGAGGACAAAAGGGAAAAGAAAGAAATGAAGTGCGTCCTGCTCTTTGAGGACAAAGGAA-
* *
89025 AAAAG-GA-AAAGT-CATCCTG
65 AAAAGAAATAAAGTGCATCCTA
* * * *
89044 CTCTTTGAGGAC-AAAGGGAAAAGAAAGAAAT-AAGGTGTGCCCTACTCTTTGATGACAAAGGAA
1 CTCTTTGAGGACAAAAGGGAAAAGAAAGAAATGAA-GTGCGTCCTGCTCTTTGAGGACAAAGGAA
* *
89107 AAAGGAAATAAATTGCATCCTA
65 AAAAGAAATAAAGTGCATCCTA
* * * * * *
89129 CTCTTTGGGGACAAAAGAGAAAAGAAGGAAATGAAGTGAGTCTTGCTCTTCGAGGACAAATGGAA
1 CTCTTTGAGGACAAAAGGGAAAAGAAAGAAATGAAGTGCGTCCTGCTCTTTGAGGACAAA-GG-A
*
89194 AAAAAGAAAATGAAA-TATC-TCCTA
64 AAAAAG-AAAT-AAAGT-GCATCCTA
* * * *
89218 CTTTTTGAGGAC-AAAGGAGAAAAG---G-AA--AAGT-CGTCTTGCTTTTTAAGGACTAAAGGA
1 CTCTTTGAGGACAAAAGG-GAAAAGAAAGAAATGAAGTGCGTCCTGCTCTTTGAGGAC-AAAGGA
* * *** *
89275 AAAGAAGGAAATGAGGTGTGCCCTG
64 AAA-AA-GAAATAAAGTGCATCCTA
* * * * *
89300 CTCTTTGAGGAC-AAAGGAAAAAGGAAAAAGGAAATAAAGTGCGTCTTGCTTTTTGTGGACAAA-
1 CTCTTTGAGGACAAAAGGGAAAA-G--AAA-GAAATGAAGTGCGTCCTGCTCTTTGAGGACAAAG
* *
89363 AAAAAAAGGGAAATGAAATGTG--TCCTT
62 GAAAAAA--GAAAT-AAA-GTGCATCCTA
*
89390 CTCTTTGAGGAC-AAAGTGAAAA-AAAGAAATGA
1 CTCTTTGAGGACAAAAGGGAAAAGAAAGAAATGA
89422 CGAAAGTGTC
Statistics
Matches: 506, Mismatches: 81, Indels: 93
0.74 0.12 0.14
Matches are distributed among these distances:
81 20 0.04
82 101 0.20
83 20 0.04
84 7 0.01
85 34 0.07
86 89 0.18
87 96 0.19
88 35 0.07
89 33 0.07
90 43 0.08
91 8 0.02
92 20 0.04
ACGTcount: A:0.43, C:0.12, G:0.24, T:0.21
Consensus pattern (86 bp):
CTCTTTGAGGACAAAAGGGAAAAGAAAGAAATGAAGTGCGTCCTGCTCTTTGAGGACAAAGGAAA
AAAGAAATAAAGTGCATCCTA
Found at i:88935 original size:87 final size:85
Alignment explanation
Indices: 88796--89203 Score: 309
Period size: 87 Copynumber: 4.7 Consensus size: 85
88786 GTTCTTTAAA
* * *
88796 GACAAAAGGGAAAAGAAAGAAATGAAGTGCAT-CCTGCTCTTTGAGGACAAAGG-AAAAAGGAAA
1 GACAAAAGGGAAAA-AAGGAAATGAAATG--TGCCTGCTCTTTAAGGACAAAGGAAAAAAGGAAA
*
88859 TGAGGAAAGTG-TCCTACTCCTTGAG
63 --A-AAAAGTGATCCTACTCCTTGAG
* *
88884 GTCAAAAGGGAAAAAAGGAAATGAAATGTGCCTTGCTCTTTAAGGATAAAGGAAAAAAGGAAAAA
1 GACAAAAGGGAAAAAAGGAAATGAAATGTGCC-TGCTCTTTAAGGACAAAGGAAAAAAGGAAAAA
*
88949 AAAGTGCATCCTACTCTTTGAG
65 AAAGTG-ATCCTACTCCTTGAG
* * **
88971 GACAGAAGGGAAAAAAGGAAATGAAATTTGTCCTGCTCTTTGCGGACAAA-GAAGAAAAGG----
1 GACAAAAGGGAAAAAAGGAAATGAAATGTG-CCTGCTCTTTAAGGACAAAGGAA-AAAAGGAAAA
* * *
89031 AAAAGTCATCCTGCTCTTTGAG
64 AAAAGTGATCCTACTCCTTGAG
* * * * *
89053 GAC-AAAGGGAAAAGAAAGAAAT-AAGGTGTGCCCTACTCTTTGATGACAAAGG-AAAAAGG-AA
1 GACAAAAGGGAAAA-AAGGAAATGAA-ATGTG-CCTGCTCTTTAAGGACAAAGGAAAAAAGGAAA
* * * *
89114 ATAAATTGCATCCTACTCTTTGGG
63 AAAAAGTG-ATCCTACTCCTTGAG
* * * * ** *
89138 GACAAAAGAGAAAAGAAGGAAATGAAGTGAGTCTTGCTCTTCGAGGACAAATGGAAAAAAAGAAA
1 GACAAAAGGGAAAA-AAGGAAATGAAATGTG-CCTGCTCTTTAAGGACAAA-GGAAAAAAGGAAA
89203 A
63 A
89204 TGAAATATCT
Statistics
Matches: 264, Mismatches: 37, Indels: 37
0.78 0.11 0.11
Matches are distributed among these distances:
81 17 0.06
82 44 0.17
83 7 0.03
84 4 0.02
85 23 0.09
86 42 0.16
87 93 0.35
88 31 0.12
89 3 0.01
ACGTcount: A:0.43, C:0.13, G:0.25, T:0.19
Consensus pattern (85 bp):
GACAAAAGGGAAAAAAGGAAATGAAATGTGCCTGCTCTTTAAGGACAAAGGAAAAAAGGAAAAAA
AAGTGATCCTACTCCTTGAG
Found at i:89010 original size:44 final size:42
Alignment explanation
Indices: 88705--89445 Score: 443
Period size: 44 Copynumber: 17.3 Consensus size: 42
88695 TTACACCCTT
88705 CTCTTTGAGGACAAAGGAAAAAA-GAAAT-AAA-GTACGTCCTG
1 CTCTTTGAGGACAAAGGAAAAAAGGAAATGAAATGT--GTCCTG
* * * *
88746 TTCTTTGAGGACAAAAGAAAAAA-GAAAT-AAAGTGCGTCTTG
1 CTCTTTGAGGACAAAGGAAAAAAGGAAATGAAA-TGTGTCCTG
* * * * * **
88787 TTCTTTAAAGACAAAAGGGAAAAGAAAGAAATGAAGTGCATCCTG
1 CTCTTTGAGGAC-AAA-GGAAAA-AAGGAAATGAAATGTGTCCTG
* *
88832 CTCTTTGAGGACAAAGG-AAAAAGGAAATGAGGAAAGTGTCCTA
1 CTCTTTGAGGACAAAGGAAAAAAGGAAATGA--AATGTGTCCTG
* *
88875 CTCCTTGAGGTCAAAAGGGAAAAAAGGAAATGAAATGTG-CCTTG
1 CTCTTTGAGGAC-AAA-GGAAAAAAGGAAATGAAATGTGTCC-TG
* * * * *
88919 CTCTTTAAGGATAAAGGAAAAAAGGAAA-AAAAAGTGCATCCTA
1 CTCTTTGAGGACAAAGGAAAAAAGGAAATGAAATGTG--TCCTG
*
88962 CTCTTTGAGGACAGAAGGGAAAAAAGGAAATGAAATTTGTCCTG
1 CTCTTTGAGGACA-AA-GGAAAAAAGGAAATGAAATGTGTCCTG
* *
89006 CTCTTTGCGGACAAA-GAAGAAAAGG--A--AAA-GTCATCCTG
1 CTCTTTGAGGACAAAGGAA-AAAAGGAAATGAAATGT-GTCCTG
* * * *
89044 CTCTTTGAGGACAAAGGGAAAAGAAAGAAAT-AAGGTGTGCCCTA
1 CTCTTTGAGGACAAA-GGAAAA-AAGGAAATGAA-ATGTGTCCTG
* *
89088 CTCTTTGATGACAAAGG-AAAAAGGAAAT-AAAT-TGCATCCTA
1 CTCTTTGAGGACAAAGGAAAAAAGGAAATGAAATGTG--TCCTG
* * * *
89129 CTCTTTGGGGACAAAAGAGAAAAGAAGGAAATGAAGTGAGTCTTG
1 CTCTTTGAGGAC-AAAG-GAAAA-AAGGAAATGAAATGTGTCCTG
* * * * *
89174 CTCTTCGAGGACAAATGGAAAAAAAGAAAATGAAATATCTCCTA
1 CTCTTTGAGGACAAA-GG-AAAAAAGGAAATGAAATGTGTCCTG
* * *
89218 CTTTTTGAGGACAAAGGAGAAAAGG--A--AAA-GTCGTCTTG
1 CTCTTTGAGGACAAAGGAAAAAAGGAAATGAAATGT-GTCCTG
* * ** *
89256 CTTTTTAAGGACTAAAGGAAAAGAAGGAAATGAGGTGTGCCCTG
1 CTCTTTGAGGAC-AAAGGAAAA-AAGGAAATGAAATGTGTCCTG
* *
89300 CTCTTTGAGGACAAAGGAAAAAGGAAAAAGGAAAT-AAAGTGCGTCTTG
1 CTCTTTGAGGACAAAGG----A--AAAAAGGAAATGAAA-TGTGTCCTG
* * * *
89348 CTTTTTGTGGACAAA-AAAAAAAGGGAAATGAAATGTGTCCTT
1 CTCTTTGAGGACAAAGGAAAAAA-GGAAATGAAATGTGTCCTG
* *
89390 CTCTTTGAGGACAAAGTGAAAAAAAGAAATGACGAAAGTGTCCTG
1 CTCTTTGAGGACAAAG-GAAAAAAGGAAATGA--AATGTGTCCTG
*
89435 CTCCTTGAGGA
1 CTCTTTGAGGA
89446 TTAAAAGGTG
Statistics
Matches: 542, Mismatches: 98, Indels: 116
0.72 0.13 0.15
Matches are distributed among these distances:
37 2 0.00
38 39 0.07
39 12 0.02
40 13 0.02
41 90 0.17
42 65 0.12
43 66 0.12
44 114 0.21
45 85 0.16
46 23 0.04
47 3 0.01
48 27 0.05
49 3 0.01
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.21
Consensus pattern (42 bp):
CTCTTTGAGGACAAAGGAAAAAAGGAAATGAAATGTGTCCTG
Found at i:89135 original size:123 final size:129
Alignment explanation
Indices: 88705--89245 Score: 358
Period size: 130 Copynumber: 4.2 Consensus size: 129
88695 TTACACCCTT
* ** ** * *
88705 CTCTTTGAGGACAAAGGAAAAAAGAAAT-AAAGTACGTCCTGTTCTTTGAGGACAAAAGAAAAAA
1 CTCTTTGAGGACAAAGGAAAAAGGAAATGAAA-TTTGTCCTACTCTTTGCGGACAAAAGAGAAAA
* * * ** * * *
88769 GAA--ATA-AAGTGC-GTCTTGTTCTTTAAAGACAAAAGGGAAAAGAAAG-AAATGAAGT-GCAT
65 GAAGGAAAGAAGT-CAGTCCTGCTCTTCGAGGAC-AAAGGGAAAA-AAAGAAAATGAAATATC-T
*
88828 CCTG
126 CCTA
** * * * *
88832 CTCTTTGAGGACAAAGGAAAAAGGAAATGAGGAAAGTGTCCTACTCCTTGAGGTCAAAAGGGAAA
1 CTCTTTGAGGACAAAGGAAAAAGGAAATGA--AATTTGTCCTACTCTTTGCGGACAAAAGAGAAA
* ** * *
88897 A-AAGGAAATGAAAT--GTGCCTTGCTCTTTAAGGATAAA-GGAAAAAAGGAAAA--AAA-AGTG
64 AGAAGGAAA-GAAGTCAGT-CC-TGCTCTTCGAGGACAAAGGGAAAAAAAGAAAATGAAATA-T-
88955 CATCCTA
124 C-TCCTA
* *
88962 CTCTTTGAGGACAGAAGGGAAAAAAGGAAATGAAATTTGTCCTGCTCTTTGCGGAC-AAAGA-AG
1 CTCTTTGAGGACA-AA-GG-AAAAAGGAAATGAAATTTGTCCTACTCTTTGCGGACAAAAGAGAA
* * *
89025 AA-AAGG-AA-AAGTCA-TCCTGCTCTTTGAGGACAAAGGGAAAAGAAAG-AAAT-AAGGTGTGC
63 AAGAAGGAAAGAAGTCAGTCCTGCTCTTCGAGGACAAAGGGAAAA-AAAGAAAATGAA-ATAT-C
89084 -CCTA
125 TCCTA
* *
89088 CTCTTTGATGACAAAGGAAAAAGGAAAT-AAA-TTGCATCCTACTCTTTGGGGACAAAAGAGAAA
1 CTCTTTGAGGACAAAGGAAAAAGGAAATGAAATTTG--TCCTACTCTTTGCGGACAAAAGAGAAA
* * *
89151 AGAAGGAAATGAAGTGAGTCTTGCTCTTCGAGGACAAATGGAAAAAAAGAAAATGAAATATCTCC
64 AGAAGGAAA-GAAGTCAGTCCTGCTCTTCGAGGACAAAGGGAAAAAAAGAAAATGAAATATCTCC
89216 TA
128 TA
*
89218 CTTTTTGAGGACAAAGGAGAAAAGGAAA
1 CTCTTTGAGGACAAAGGA-AAAAGGAAA
89246 AGTCGTCTTG
Statistics
Matches: 332, Mismatches: 46, Indels: 68
0.74 0.10 0.15
Matches are distributed among these distances:
121 3 0.01
122 3 0.01
123 26 0.08
124 7 0.02
125 20 0.06
126 34 0.10
127 35 0.11
128 10 0.03
129 43 0.13
130 88 0.27
131 34 0.10
132 16 0.05
133 13 0.04
ACGTcount: A:0.43, C:0.13, G:0.24, T:0.20
Consensus pattern (129 bp):
CTCTTTGAGGACAAAGGAAAAAGGAAATGAAATTTGTCCTACTCTTTGCGGACAAAAGAGAAAAG
AAGGAAAGAAGTCAGTCCTGCTCTTCGAGGACAAAGGGAAAAAAAGAAAATGAAATATCTCCTA
Found at i:89399 original size:90 final size:91
Alignment explanation
Indices: 89244--89412 Score: 227
Period size: 90 Copynumber: 1.9 Consensus size: 91
89234 GAGAAAAGGA
* **
89244 AAAGTCGTCTTGCTTTTTAAGGACTAAAGGAAAAGAAGGAAATGAGGTGTGCCCTGCTCTTTGAG
1 AAAGTCGTCTTGCTTTTTAAGGACTAAA-GAAAAAAAGGAAATGAAATGTGCCCTGCTCTTTGAG
89309 GACAAAG-GAAAAAGGAAAAAGGAAAT
65 GACAAAGTGAAAAAGGAAAAAGGAAAT
** * *
89335 AAAGTGCGTCTTGCTTTTTGTGGAC-AAA-AAAAAAAGGGAAATGAAATGTGTCCTTCTCTTTGA
1 AAAGT-CGTCTTGCTTTTTAAGGACTAAAGAAAAAAA-GGAAATGAAATGTGCCCTGCTCTTTGA
89398 GGACAAAGTGAAAAA
64 GGACAAAGTGAAAAA
89413 AAGAAATGAC
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
89 6 0.09
90 31 0.46
91 14 0.21
92 17 0.25
ACGTcount: A:0.40, C:0.11, G:0.25, T:0.24
Consensus pattern (91 bp):
AAAGTCGTCTTGCTTTTTAAGGACTAAAGAAAAAAAGGAAATGAAATGTGCCCTGCTCTTTGAGG
ACAAAGTGAAAAAGGAAAAAGGAAAT
Found at i:89518 original size:62 final size:62
Alignment explanation
Indices: 89429--91547 Score: 2243
Period size: 62 Copynumber: 34.4 Consensus size: 62
89419 TGACGAAAGT
* * ** * * * *
89429 GTCCTGCTCCTTGAGGATTAAAAGGTGCCACCAACTTTTATGGGCTTTAAAAAGAAAAATGT
1 GTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGC
* * * *
89491 GTCCTACTCTTTGAGAACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAATGC
1 GTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGC
* * * *
89553 CTCATGCGT-TTTGAGGATTAAAAGGTGCCACCAACTCTTGTGGGC-TTGAAAAGAAAAAGGC
1 GTCCTGC-TCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGC
*
89614 GTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAGGC
1 GTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGC
* * * * * *
89676 ATCCCGCTCTTTGGGGACTAAAAGGTGCCACCAACTCTTGTAGGCTTTGAAGAGAAAAAGGC
1 GTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGC
* * *
89738 GTCCTGCTCTTGGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAATGC
1 GTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGC
* * * ** *
89800 ATCCTGCTCTTTGAGGACTAAAGGGTGCCACCGACTCGTGTAAGCTTTGAAAAG--AAAGAC
1 GTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGC
* * * * **
89860 ATCCTACTCTTTGAGGACTAAAGGGTGCCACCAACTCATGTGGGCTTTG-AAAGAAAAAGAT
1 GTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGC
* * * *
89921 GTCCTACTATTTAAGGACAAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGC
1 GTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGC
** * * * *
89983 GTCCAACTCTTTGAGGACTAAAAGGTACCACAAACTCGTGTGGGCTCTGAAAAGAAAAAGGT
1 GTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGC
* * * * *
90045 GTCCTGCTCTTTGAGAACTAAAGGGTGCCACTAACTTGTATGGGCTTGCTTGAAAAGAAAAAGGC
1 GTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGC-T--TTGAAAAGAAAAAGGC
* * * * * * *
90110 GT-CTAGCTTTTTCAGAACTAAAGGGTGCCACCAACTAGTATAGGC-TTG-AAA-AAAAAGGC
1 GTCCT-GCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGC
* * * * *
90169 GTCTTGCTCTTTGAGGACTAAAAGTTGCCACCAACTCGTGTGAGCTTTG-AATGAAAAAGGT
1 GTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGC
** * * * * *
90230 AACCCGCTCTTTGAGGACTAAAGGGTGCCACCAACTCTTGTGGGCTTTGAAAAGAAAAAAGT
1 GTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGC
* * *
90292 ATCCTGCTCTTTGAGGA-TAAAAAGGTACCACCAACTCGTGTGGGCTTTGAAAAGGAAAAGGC
1 GTCCTGCTCTTTGAGGACT-AAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGC
* * * *** * *
90354 GTCTTGCTTTTTAAGGACTAAAAGGTATGACCAACTCATGTGGGCCTTGAAAAGAAAAAGGC
1 GTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGC
* * * * * *
90416 GTCCTGCTTTTTGAGAACTAAAGGGTGCCACTAACTCGTGTGGGCTTTAAAAAG-TAAAGGC
1 GTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGC
* * * * * * **
90477 ATCCTACTTTTTGAGGACTAAAAAGGTGCCACCAACTCTTATGGGCTTT-AAATG-AAAAGAT
1 GTCCTGCTCTTTGAGGACT-AAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGC
* * * * *
90538 GTCCTGCTCTTTGAGGAC-AAAAGGGTGCCACCAACTCATGTGAGCTTTGAAAATAAGAAGGT
1 GTCCTGCTCTTTGAGGACTAAAA-GGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGC
* * * *
90600 GTCCTACTCTTTAAGGATTAAATGGTGCCACCAACTCGCT-TGGGCTTT-AAAATGAAAAA-GC
1 GTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCG-TGTGGGCTTTGAAAA-GAAAAAGGC
* * * * * * *
90661 ATCCTGCTCTTTTAGGATTGAAAGGTGCCACCAACTTGTGTGAGC-TTGAAAAGGAAAAGGC
1 GTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGC
* * * * *
90722 GTCATGCTCTTTGAGAAC-AGAAAGGTGCC-CTAACTTGTGT-GGCTTT-AAAACG-AAAGGGC
1 GTCCTGCTCTTTGAGGACTA-AAAGGTGCCACCAACTCGTGTGGGCTTTGAAAA-GAAAAAGGC
* * * * * *
90781 ATCCTACTCTTTGAGGACT-GAAGGATACCACCAACTCGTGTGGGCTTTGAAAAGAAAAAAAAGT
1 GTCCTGCTCTTTGAGGACTAAAAGG-TGCCACCAACTCGTGTGGGCTTTGAAAAG--AAAAAGGC
* *
90845 GTCTTGCTCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAA-AGAAAAGGC
1 GTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGA-AAAAGGC
** * * * *
90907 GTCCTATTTTTTTAAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAATGC
1 GTCCT-GCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGC
* * *
90970 ATCCTGCTCTTTGAGGACTAAAAGCTACCACCAACTCGTGTGGGC-TTGAAAAGAAAAAGGC
1 GTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGC
* * * * * *
91031 ATCCTGTTCTTTGAGGACTAAAGGGTGCCACCAACTCATGTGGGCTTTGAAAAGGAAAAGGT
1 GTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGC
* * * * *
91093 ATCCTACTCTTTGGGGACTAAAAGGTGCCACCAACTCCTGTGGGCTTTCAAAAGAAAAAGGC
1 GTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGC
* * * * *
91155 ATCCTGCTCTTTAAGGATTAAAAAGTACCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGC
1 GTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGC
* * * *
91217 GTCTTGCTCTTT-ACGGACT-AAAGGATGCCACCAACTCATGTAGGCTTTGAAAAAAAAAAGGC
1 GTCCTGCTCTTTGA-GGACTAAAAGG-TGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGC
* ** * *
91279 GTCTTGCTCTTTGAGGACTGGAAGGTGCCACCAACTCATGTGGGCATTG-AAAGAAAAAAGG-
1 GTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAG-AAAAAGGC
* * *
91340 GTCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTTGGTTTTGAAAAGAAAAAGGC
1 GTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGC
* * * *
91402 AT-CTAGCTCTTTGAGGACTAAATGTTGCCACTAACTCGTGTGGGCTTTGAAAAGAAAAAGGC
1 GTCCT-GCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGC
* * * * *
91464 GTCCTTCTCTTTGAGGACTATAGGGTGCCACCAACTTGTGTGGGC-TTGAAAAGAAAAAAGTC
1 GTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAG-AAAAAGGC
* *
91526 ATCATGCTCTTTGAGGACTAAA
1 GTCCTGCTCTTTGAGGACTAAA
91548 GGAGAGCAGG
Statistics
Matches: 1728, Mismatches: 277, Indels: 104
0.82 0.13 0.05
Matches are distributed among these distances:
58 4 0.00
59 78 0.05
60 110 0.06
61 400 0.23
62 964 0.56
63 68 0.04
64 50 0.03
65 54 0.03
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.25
Consensus pattern (62 bp):
GTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGC
Found at i:89573 original size:124 final size:124
Alignment explanation
Indices: 89430--92032 Score: 2631
Period size: 124 Copynumber: 21.0 Consensus size: 124
89420 GACGAAAGTG
* * ** * * * *
89430 TCCTGCTCCTTGAGGATTAAAAGGTGCCACCAACTTTTATGGGCTTTAAAAAGAAAAATGTGTCC
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCC
* * * * *
89495 TACTCTTTGAGAACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAATGCC
66 TGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCA
* * *
89554 TCATGCGT-TTTGAGGATTAAAAGGTGCCACCAACTCTTGTGGGC-TTGAAAAGAAAAAGGCGTC
1 TCCTGC-TCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTC
*
89617 CTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAGGCA
65 CTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCA
* * * * *
89677 TCCCGCTCTTTGGGGACTAAAAGGTGCCACCAACTCTTGTAGGCTTTGAAGAGAAAAAGGCGTCC
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCC
* * *
89742 TGCTCTTGGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAATGCA
66 TGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCA
* * ** * *
89801 TCCTGCTCTTTGAGGACTAAAGGGTGCCACCGACTCGTGTAAGCTTTGAAAAG--AAAGACATCC
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCC
* * * ***
89864 TACTCTTTGAGGACTAAAGGGTGCCACCAACTCATGTGGGCTTTG-AAAGAAAAAGATG
66 TGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCA
* * * *
89922 TCCTACTATTTAAGGACAAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCC
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCC
** * * * **
89987 AACTCTTTGAGGACTAAAAGGTACCACAAACTCGTGTGGGCTCTGAAAAGAAAAAGGTG
66 TGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCA
* * * * *
90046 TCCTGCTCTTTGAGAACTAAAGGGTGCCACTAACTTGTATGGGCTTGCTTGAAAAGAAAAAGGCG
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGC-T--TTGAAAAGAAAAAGGCG
* * * * * * * *
90111 T-CTAGCTTTTTCAGAACTAAAGGGTGCCACCAACTAGTATAGGC-TTG-AAA-AAAAAGGCG
63 TCCT-GCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCA
* * * * ***
90170 TCTTGCTCTTTGAGGACTAAAAGTTGCCACCAACTCGTGTGAGCTTTG-AATGAAAAAGGTAACC
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCC
* * * * *
90234 CGCTCTTTGAGGACTAAAGGGTGCCACCAACTCTTGTGGGCTTTGAAAAGAAAAAAGTA
66 TGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCA
* *
90293 TCCTGCTCTTTGAGGA-TAAAAAGGTACCACCAACTCGTGTGGGCTTTGAAAAGGAAAAGGCGTC
1 TCCTGCTCTTTGAGGACT-AAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTC
* * * *** * * *
90357 TTGCTTTTTAAGGACTAAAAGGTATGACCAACTCATGTGGGCCTTGAAAAGAAAAAGGCG
65 CTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCA
* * * * * * *
90417 TCCTGCTTTTTGAGAACTAAAGGGTGCCACTAACTCGTGTGGGCTTTAAAAAG-TAAAGGCATCC
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCC
* * * * * *
90481 TACTTTTTGAGGACTAAAAAGGTGCCACCAACTCTTATGGGCTTT-AAATGAAAAGATG--
66 TGCTCTTTGAGGACT-AAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAA-AGGCA
* * * * *
90539 TCCTGCTCTTTGAGGAC-AAAAGGGTGCCACCAACTCATGTGAGCTTTGAAAATAAGAAGGTGTC
1 TCCTGCTCTTTGAGGACTAAAA-GGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTC
* * * *
90603 CTACTCTTTAAGGATTAAATGGTGCCACCAACTCGCT-TGGGCTTT-AAAATGAAAAA-GCA
65 CTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCG-TGTGGGCTTTGAAAA-GAAAAAGGCA
* * * * * * *
90662 TCCTGCTCTTTTAGGATTGAAAGGTGCCACCAACTTGTGTGAGC-TTGAAAAGGAAAAGGCGTCA
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCC
* * * *
90726 TGCTCTTTGAGAAC-AGAAAGGTGCC-CTAACTTGTGT-GGCTTT-AAAACG-AAAGGGCA
66 TGCTCTTTGAGGACTA-AAAGGTGCCACCAACTCGTGTGGGCTTTGAAAA-GAAAAAGGCA
* * * * *
90782 TCCTACTCTTTGAGGACT-GAAGGATACCACCAACTCGTGTGGGCTTTGAAAAGAAAAAAAAGTG
1 TCCTGCTCTTTGAGGACTAAAAGG-TGCCACCAACTCGTGTGGGCTTTGAAAAG--AAAAAGGCG
* * *
90846 TCTTGCTCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAA-AGAAAAGGCG
63 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGA-AAAAGGCA
** * * * * *
90908 TCCTATTTTTTTAAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAATGCATC
1 TCCT-GCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTC
* *
90973 CTGCTCTTTGAGGACTAAAAGCTACCACCAACTCGTGTGGGC-TTGAAAAGAAAAAGGCA
65 CTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCA
* * * * **
91032 TCCTGTTCTTTGAGGACTAAAGGGTGCCACCAACTCATGTGGGCTTTGAAAAGGAAAAGGTATCC
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCC
* * * *
91097 TACTCTTTGGGGACTAAAAGGTGCCACCAACTCCTGTGGGCTTTCAAAAGAAAAAGGCA
66 TGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCA
* * * * *
91156 TCCTGCTCTTTAAGGATTAAAAAGTACCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCT
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCC
* * * *
91221 TGCTCTTT-ACGGACT-AAAGGATGCCACCAACTCATGTAGGCTTTGAAAAAAAAAAGGCG
66 TGCTCTTTGA-GGACTAAAAGG-TGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCA
* ** * *
91280 TCTTGCTCTTTGAGGACTGGAAGGTGCCACCAACTCATGTGGGCATTG-AAAGAAAAAAGG-GTC
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAG-AAAAAGGCGTC
* * *
91343 CTACTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTTGGTTTTGAAAAGAAAAAGGCA
65 CTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCA
* * *
91403 T-CTAGCTCTTTGAGGACTAAATGTTGCCACTAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTC
1 TCCT-GCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTC
* * * * *
91467 CTTCTCTTTGAGGACTATAGGGTGCCACCAACTTGTGTGGGC-TTGAAAAGAAAAAAGTCA
65 CTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAG-AAAAAGGCA
*
91527 TCATGCTCTTTGAGGACTAAAGGAGAGCAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTG-
1 TCCTGCTCTTTGAGGACT-------------A--AAA-GGTGCCACCAACTCGTGTGGGCTTTGA
* ** * * *
91591 AATGAAAAAGGTATCCCGCTCTTTGAGGACTAAAAGGTGCCACTAACTCGTGTAGGCTTTGAAAA
50 AAAGAAAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAA
** *
91656 GAAAAAAACG
115 GAAAAAGGCA
* * * *
91666 TCCTACTCTTTGAGGA-TAAAAAGATGCCACCAACTCGTGCGGGCTTTGAAAA-AGAAAACGCGT
1 TCCTGCTCTTTGAGGACT-AAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGA-AAAAGGCGT
* * *
91729 CCTGTTCTTTGAGGACTAAAAGATGCCACCAACTCGTGTGGGCCTTGAAAAGAAAAAGGCA
64 CCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCA
* * * * * *
91790 TCCTACTCTTTGAAGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTAAAAAG-GAAAGGCATCC
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCC
* * * * * ** *
91854 TACTCTTTGTGGACTAAAATGATGCCACCAGCTCGTGTGGGATTT-AAAAGGAAAAAAACG
66 TGCTCTTTGAGGACTAAAA-GGTGCCACCAACTCGTGTGGGCTTTGAAAA-GAAAAAGGCA
* * * * ** * *
91914 TCCTACTTTTTAAGGACTAAATGGTGTTACCAGCTCGTGTGGGCTTT-AAAAGAAAAAAGCGTCC
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCC
* * * *
91978 TTCTTTTTAAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAA
66 TGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAA
92033 TATGTCTTGC
Statistics
Matches: 2056, Mismatches: 345, Indels: 157
0.80 0.13 0.06
Matches are distributed among these distances:
119 7 0.00
120 90 0.04
121 81 0.04
122 157 0.08
123 607 0.30
124 843 0.41
125 61 0.03
126 18 0.01
127 86 0.04
128 3 0.00
137 1 0.00
138 1 0.00
139 69 0.03
140 32 0.02
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (124 bp):
TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCC
TGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCA
Found at i:89768 original size:185 final size:186
Alignment explanation
Indices: 89429--92057 Score: 2636
Period size: 185 Copynumber: 14.1 Consensus size: 186
89419 TGACGAAAGT
* * ** * * * **
89429 GTCCTGCTCCTTGAGGATTAAAAGGTGCCACCAACTTTTATGGGCTTTAAAAAGAAAAATGTGTC
1 GTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCATC
* * * * * *
89494 CTACTCTTTGAGAACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAATGCCTCATG
66 CTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCATCCTG
* *
89559 CGT-TTTGAGGATTAAAAGGTGCCACCAACTCTTGTGGGC-TTGAAAAGAAAAAGGC
131 C-TCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGC
*
89614 GTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAGGCATC
1 GTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCATC
* * * * * *
89679 CCGCTCTTTGGGGACTAAAAGGTGCCACCAACTCTTGTAGGCTTTGAAGAGAAAAAGGCGTCCTG
66 CTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCATCCTG
* * *
89744 CTCTTGGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAATGC
131 CTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGC
* * * ** *
89800 ATCCTGCTCTTTGAGGACTAAAGGGTGCCACCGACTCGTGTAAGCTTTGAAAAG--AAAGACATC
1 GTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCATC
* * * *** *
89863 CTACTCTTTGAGGACTAAAGGGTGCCACCAACTCATGTGGGCTTTG-AAAGAAAAAGATGTCCTA
66 CTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCATCCTG
* * *
89927 CTATTTAAGGACAAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGC
131 CTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGC
** * * * **
89983 GTCCAACTCTTTGAGGACTAAAAGGTACCACAAACTCGTGTGGGCTCTGAAAAGAAAAAGGTGTC
1 GTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCATC
* * * * * *
90048 CTGCTCTTTGAGAACTAAAGGGTGCCACTAACTTGTATGGGCTTGCTTGAAAAGAAAAAGGCGT-
66 CTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGC-T--TTGAAAAGAAAAAGGCATC
* * * * * * *
90112 CTAGCTTTTTCAGAACTAAAGGGTGCCACCAACTAGTATAGGC-TTG-AAA-AAAAAGGC
128 CT-GCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGC
* * * * * *
90169 GTCTTGCTCTTTGAGGACTAAAAGTTGCCACCAACTCGTGTGAGCTTTG-AATGAAAAAGGTAAC
1 GTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCATC
* * * * *
90233 CCGCTCTTTGAGGACTAAAGGGTGCCACCAACTCTTGTGGGCTTTGAAAAGAAAAAAGTATCCTG
66 CTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCATCCTG
* *
90298 CTCTTTGAGGA-TAAAAAGGTACCACCAACTCGTGTGGGCTTTGAAAAGGAAAAGGC
131 CTCTTTGAGGACT-AAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGC
* * * *** * * *
90354 GTCTTGCTTTTTAAGGACTAAAAGGTATGACCAACTCATGTGGGCCTTGAAAAGAAAAAGGCGTC
1 GTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCATC
* * * * * * *
90419 CTGCTTTTTGAGAACTAAAGGGTGCCACTAACTCGTGTGGGCTTTAAAAAG-TAAAGGCATCCTA
66 CTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCATCCTG
* * * * **
90483 CTTTTTGAGGACTAAAAAGGTGCCACCAACTCTTATGGGCTTT-AAATG-AAAAGAT
131 CTCTTTGAGGACT-AAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGC
* * * * **
90538 GTCCTGCTCTTTGAGGAC-AAAAGGGTGCCACCAACTCATGTGAGCTTTGAAAATAAGAAGGTGT
1 GTCCTGCTCTTTGAGGACTAAAA-GGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCAT
* * * *
90602 CCTACTCTTTAAGGATTAAATGGTGCCACCAACTCGCT-TGGGCTTT-AAAATGAAAAA-GCATC
65 CCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCG-TGTGGGCTTTGAAAA-GAAAAAGGCATC
* * * * * *
90664 CTGCTCTTTTAGGATTGAAAGGTGCCACCAACTTGTGTGAGC-TTGAAAAGGAAAAGGC
128 CTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGC
* * * * *
90722 GTCATGCTCTTTGAGAAC-AGAAAGGTGCC-CTAACTTGTGT-GGCTTT-AAAACG-AAAGGGCA
1 GTCCTGCTCTTTGAGGACTA-AAAGGTGCCACCAACTCGTGTGGGCTTTGAAAA-GAAAAAGGCA
* * * * **
90782 TCCTACTCTTTGAGGACT-GAAGGATACCACCAACTCGTGTGGGCTTTGAAAAGAAAAAAAAGTG
64 TCCTGCTCTTTGAGGACTAAAAGG-TGCCACCAACTCGTGTGGGCTTTGAAAAG--AAAAAGGCA
* *
90846 TCTTGCTCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAA-AGAAAAGGC
126 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGA-AAAAGGC
** * * * *
90907 GTCCTATTTTTTTAAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAATGCAT
1 GTCCT-GCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCAT
* *
90972 CCTGCTCTTTGAGGACTAAAAGCTACCACCAACTCGTGTGGGC-TTGAAAAGAAAAAGGCATCCT
65 CCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCATCCT
* * * * *
91036 GTTCTTTGAGGACTAAAGGGTGCCACCAACTCATGTGGGCTTTGAAAAGGAAAAGGT
130 GCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGC
* * * * *
91093 ATCCTACTCTTTGGGGACTAAAAGGTGCCACCAACTCCTGTGGGCTTTCAAAAGAAAAAGGCATC
1 GTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCATC
* * * * * *
91158 CTGCTCTTTAAGGATTAAAAAGTACCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCTTG
66 CTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCATCCTG
* * *
91223 CTCTTT-ACGGACT-AAAGGATGCCACCAACTCATGTAGGCTTTGAAAAAAAAAAGGC
131 CTCTTTGA-GGACTAAAAGG-TGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGC
* ** * * *
91279 GTCTTGCTCTTTGAGGACTGGAAGGTGCCACCAACTCATGTGGGCATTG-AAAGAAAAAAGG-GT
1 GTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAG-AAAAAGGCAT
* * *
91342 CCTACTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTTGGTTTTGAAAAGAAAAAGGCAT-CT
65 CCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCATCCT
* * *
91406 AGCTCTTTGAGGACTAAATGTTGCCACTAACTCGTGTGGGCTTTGAAAAGAAAAAGGC
130 -GCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGC
* * * * *
91464 GTCCTTCTCTTTGAGGACTATAGGGTGCCACCAACTTGTGTGGGC-TTGAAAAGAAAAAAGTCAT
1 GTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAG-AAAAAGGCAT
*
91528 CATGCTCTTTGAGGACTAAAGGAGAGCAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTG-A
65 CCTGCTCTTTGAGGACT-------------A--AAA-GGTGCCACCAACTCGTGTGGGCTTTGAA
* * * * *
91592 ATGAAAAAGGTATCCCGCTCTTTGAGGACTAAAAGGTGCCACTAACTCGTGTAGGCTTTGAAAAG
114 AAGAAAAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAG
**
91657 AAAAAAAC
179 AAAAAGGC
* * * * *
91665 GTCCTACTCTTTGAGGA-TAAAAAGATGCCACCAACTCGTGCGGGCTTTGAAAA-AGAAAACGCG
1 GTCCTGCTCTTTGAGGACT-AAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGA-AAAAGGCA
* * *
91728 TCCTGTTCTTTGAGGACTAAAAGATGCCACCAACTCGTGTGGGCCTTGAAAAGAAAAAGGCATCC
64 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCATCC
* * * * *
91793 TACTCTTTGAAGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTAAAAAG-GAAAGGC
129 TGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGC
* * * * * * ** *
91850 ATCCTACTCTTTGTGGACTAAAATGATGCCACCAGCTCGTGTGGGATTT-AAAAGGAAAAAAACG
1 GTCCTGCTCTTTGAGGACTAAAA-GGTGCCACCAACTCGTGTGGGCTTTGAAAA-GAAAAAGGCA
* * * * ** * * *
91914 TCCTACTTTTTAAGGACTAAATGGTGTTACCAGCTCGTGTGGGCTTT-AAAAGAAAAAAGCGTCC
64 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCATCC
* * * * ***
91978 TTCTTTTTAAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAATAT
129 TGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGC
* *
92036 GTCTTGCTCTTTGAGGTCTAAA
1 GTCCTGCTCTTTGAGGACTAAA
92058 GGGCTTAAAG
Statistics
Matches: 2027, Mismatches: 342, Indels: 149
0.81 0.14 0.06
Matches are distributed among these distances:
180 4 0.00
181 46 0.02
182 56 0.03
183 159 0.08
184 231 0.11
185 686 0.34
186 554 0.27
187 14 0.01
188 24 0.01
189 90 0.04
190 3 0.00
199 1 0.00
200 2 0.00
201 125 0.06
202 32 0.02
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.25
Consensus pattern (186 bp):
GTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCATC
CTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCATCCTG
CTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGC
Found at i:91627 original size:78 final size:78
Alignment explanation
Indices: 91477--91624 Score: 219
Period size: 78 Copynumber: 1.9 Consensus size: 78
91467 CTTCTCTTTG
* * *
91477 AGGACTATAGGGTGCCACCAACTTGTGTGGGCTTGAAAAGAAAAAAGTCATCATGCTCTTTGAGG
1 AGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTGAAAAGAAAAAAGTCATCACGCTCTTTGAGG
91542 ACTAAAGGAGAGC
66 ACTAAAGGAGAGC
* * *
91555 AGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTG-AATGAAAAAGGT-ATCCCGCTCTTTGAG
1 AGGACTAAAGGGTGCCACCAACTCGTGTGGGC-TTGAAAAGAAAAAAGTCATCACGCTCTTTGAG
91618 GACTAAA
65 GACTAAA
91625 AGGTGCCACT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
77 20 0.32
78 40 0.63
79 3 0.05
ACGTcount: A:0.32, C:0.18, G:0.28, T:0.22
Consensus pattern (78 bp):
AGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTGAAAAGAAAAAAGTCATCACGCTCTTTGAGG
ACTAAAGGAGAGC
Found at i:91679 original size:62 final size:62
Alignment explanation
Indices: 91555--92032 Score: 518
Period size: 62 Copynumber: 7.7 Consensus size: 62
91545 AAAGGAGAGC
* * * ** **
91555 AGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTG-AATGAAAAAGGTATCCCGCTCTTTG
1 AGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAAGCGTCCTACTCTTTG
* * *
91616 AGGACTAAAAGGTGCCACTAACTCGTGTAGGCTTTGAAAAGAAAAAAACGTCCTACTCTTTG
1 AGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAAGCGTCCTACTCTTTG
* * * **
91678 AGGA-TAAAAAGATGCCACCAACTCGTGCGGGCTTTGAAAA-AGAAAACGCGTCCTGTTCTTTG
1 AGGACT-AAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGA-AAAAAGCGTCCTACTCTTTG
* * * *
91740 AGGACTAAAAGATGCCACCAACTCGTGTGGGCCTTGAAAAGAAAAAGGCATCCTACTCTTTG
1 AGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAAGCGTCCTACTCTTTG
* * * * * *
91802 AAGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTAAAAAG-GAAAGGCATCCTACTCTTTG
1 AGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAAGCGTCCTACTCTTTG
* * * * * * *
91863 TGGACTAAAATGATGCCACCAGCTCGTGTGGGATTT-AAAAGGAAAAAAACGTCCTACTTTTTA
1 AGGACTAAAA-GGTGCCACCAACTCGTGTGGGCTTTGAAAA-GAAAAAAGCGTCCTACTCTTTG
* ** * * * *
91926 AGGACTAAATGGTGTTACCAGCTCGTGTGGGCTTT-AAAAGAAAAAAGCGTCCTTCTTTTTA
1 AGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAAGCGTCCTACTCTTTG
*
91987 AGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAA
1 AGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAA
92033 TATGTCTTGC
Statistics
Matches: 354, Mismatches: 54, Indels: 17
0.83 0.13 0.04
Matches are distributed among these distances:
61 116 0.33
62 214 0.60
63 24 0.07
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (62 bp):
AGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAAGCGTCCTACTCTTTG
Found at i:91699 original size:201 final size:202
Alignment explanation
Indices: 91353--91909 Score: 575
Period size: 201 Copynumber: 2.8 Consensus size: 202
91343 CTACTCTTTG
* * *
91353 AGGACTAAAAGGTGCCACCAACTCGTGTTGGTTTTGAAAAGAAAAAGGCATCTAGCTCTTTGAGG
1 AGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCATCCAGCTCTTTGAGG
* * * ** *
91418 ACTAAATGTTGCCACTAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTTCTCTTTGAGGACT
66 ACTAAAAGGTGCCACTAACTCGTGTAGGCTTTGAAAAGAAAAAAACGTCCTACTCTTTGAGGACT
* * * * *
91483 ATAGGGTGCCACCAACTTGTGTGGGC-TTG-AAAAGAAAAAAGTCATCATGCTCTTTGAGGACTA
131 AAAAGATGCCACCAACTCGTGCGGGCTTTGAAAAAG-AAAAAG-CATCATGCTCTTTGAGGACTA
91546 AAGGAGAGC
194 AAGGAGAGC
* * * *
91555 AGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTG-AATGAAAAAGGTATCCCGCTCTTTGAGG
1 AGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCATCCAGCTCTTTGAGG
91619 ACTAAAAGGTGCCACTAACTCGTGTAGGCTTTGAAAAGAAAAAAACGTCCTACTCTTTGAGGA-T
66 ACTAAAAGGTGCCACTAACTCGTGTAGGCTTTGAAAAGAAAAAAACGTCCTACTCTTTGAGGACT
* * * *
91683 AAAAAGATGCCACCAACTCGTGCGGGCTTTGAAAAAGAAAACGCGTCCTGTTCTTTGAGGACT--
131 -AAAAGATGCCACCAACTCGTGCGGGCTTTGAAAAAGAAAAAGCATCATGCTCTTTGAGGACTAA
91746 A--A-A--
195 AGGAGAGC
* *
91749 A-G------A--TGCCACCAACTCGTGTGGGCCTTGAAAAGAAAAAGGCATCCTA-CTCTTTGAA
1 AGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCATCC-AGCTCTTTGAG
* * * * * ** * *
91804 GACTAAAGGGTGCCACCAACTCGTGTGGGCTTTAAAAAG-GAAAGGCATCCTACTCTTTGTGGAC
65 GACTAAAAGGTGCCACTAACTCGTGTAGGCTTTGAAAAGAAAAAAACGTCCTACTCTTTGAGGAC
* * * *
91868 TAAAATGATGCCACCAGCTCGTGTGGGATTT-AAAAGGAAAAA
130 TAAAA-GATGCCACCAACTCGTGCGGGCTTTGAAAAAGAAAAA
91910 AACGTCCTAC
Statistics
Matches: 306, Mismatches: 42, Indels: 31
0.81 0.11 0.08
Matches are distributed among these distances:
185 55 0.18
186 80 0.26
193 1 0.00
194 1 0.00
196 1 0.00
197 1 0.00
199 1 0.00
200 1 0.00
201 119 0.39
202 41 0.13
203 5 0.02
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (202 bp):
AGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCATCCAGCTCTTTGAGG
ACTAAAAGGTGCCACTAACTCGTGTAGGCTTTGAAAAGAAAAAAACGTCCTACTCTTTGAGGACT
AAAAGATGCCACCAACTCGTGCGGGCTTTGAAAAAGAAAAAGCATCATGCTCTTTGAGGACTAAA
GGAGAGC
Found at i:92048 original size:247 final size:247
Alignment explanation
Indices: 91555--92060 Score: 547
Period size: 247 Copynumber: 2.0 Consensus size: 247
91545 AAAGGAGAGC
* ** **
91555 AGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAATGAA--AAAGGTATCCCGCTCTTTGAG
1 AGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTT-AA-AAAGGAAAGGCGTCCTACTCTTTGAG
* * **
91618 GACTAAAAGGTGCCACTAACTCGTGTAGGCTTTGAAAAGAAAAAAACGTCCTACTCTTTGAGGA-
64 GACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTACTCTTTGAGGAC
* * * *
91682 TAAAAAGATGCCACCAACTCGTGCGGGCTTTGAAAA-AGAAAACGCGTCCTGTTCTTTGAGGACT
129 T-AAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGA-AAAAGGCGTCCTGCTCTTTGAGGACT
* * * *
91746 AAAAGATGCCACCAACTCGTGTGGGCCTTGAAAAGAAAAAGGCATCCTACTCTTTG
192 AAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCTTTG
* * *
91802 AAGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTAAAAAGGAAAGGCATCCTACTCTTTGTGGA
1 AGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTAAAAAGGAAAGGCGTCCTACTCTTTGAGGA
* * * ** * *
91867 CTAAAATGATGCCACCAGCTCGTGTGGGATTT-AAAAGGAAAAAAACGTCCTACTTTTTAAGGAC
66 CTAAAA-GGTGCCACCAACTCGTGTGGGCTTTGAAAA-GAAAAAGGCGTCCTACTCTTTGAGGAC
* ** * * * * *
91931 TAAATGGTGTTACCAGCTCGTGTGGGCTTT-AAAAGAAAAAAGCGTCCTTCTTTTTAAGGACTAA
129 TAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTAA
* *** *
91995 AGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAATATGTCTTGCTCTTTG
194 AAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCTTTG
*
92049 AGGTCTAAAGGG
1 AGGACTAAAGGG
92061 CTTAAAGGGG
Statistics
Matches: 218, Mismatches: 35, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
245 2 0.01
246 2 0.01
247 145 0.67
248 68 0.31
249 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (247 bp):
AGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTAAAAAGGAAAGGCGTCCTACTCTTTGAGGA
CTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTACTCTTTGAGGACTA
AAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTAAAA
GGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCTTTG
Found at i:93332 original size:17 final size:17
Alignment explanation
Indices: 93310--93353 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 17
93300 TTCCTCTTTA
*
93310 TTTATTCTTTTT-GTTTT
1 TTTATT-TTTTTAATTTT
93327 TTTATTTTTTTAATTTT
1 TTTATTTTTTTAATTTT
93344 TTTAATTTTT
1 TTT-ATTTTT
93354 GTTTCTTTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 5 0.21
17 13 0.54
18 6 0.25
ACGTcount: A:0.14, C:0.02, G:0.02, T:0.82
Consensus pattern (17 bp):
TTTATTTTTTTAATTTT
Found at i:93334 original size:8 final size:8
Alignment explanation
Indices: 93310--93353 Score: 52
Period size: 9 Copynumber: 5.1 Consensus size: 8
93300 TTCCTCTTTA
93310 TTTATTCTT
1 TTTATT-TT
*
93319 TTTGTTTT
1 TTTATTTT
93327 TTTATTTT
1 TTTATTTT
93335 TTTAATTTT
1 TTT-ATTTT
93344 TTTAATTTT
1 TTT-ATTTT
93353 T
1 T
93354 GTTTCTTTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
8 12 0.38
9 20 0.62
ACGTcount: A:0.14, C:0.02, G:0.02, T:0.82
Consensus pattern (8 bp):
TTTATTTT
Found at i:98317 original size:78 final size:79
Alignment explanation
Indices: 98230--98423 Score: 218
Period size: 78 Copynumber: 2.5 Consensus size: 79
98220 CCCGCTCAGT
* * * *
98230 AATAACGGGGTTGGAGTATCCCT-GATAGTGGAAGATCAATGTTTTGAAAATAAAATCGGGATTG
1 AATAACGGGGTTGGAGTATCCCTCGATAGTGAAAAATCAATGTTTTGAAAATAAAACCGGGATTA
*
98294 GAGTATCCCTTCA-A
66 GAGTATCCCCT-AGA
* ** *
98308 AATAACGGGGTTGGAGTAT-CCTCGATTGTGAAAAATTGATGTTTTGAAAATAAAACCGGGGTTA
1 AATAACGGGGTTGGAGTATCCCTCGATAGTGAAAAATCAATGTTTTGAAAATAAAACCGGGATTA
98372 GAGTATCCCCTAGGA
66 GAGTATCCCCTA-GA
* * *
98387 AATAATGGGGTAGGAGTAT-CCACGATTA-TGAAAAATC
1 AATAACGGGGTTGGAGTATCCCTCGA-TAGTGAAAAATC
98424 GGTATTTTAG
Statistics
Matches: 98, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
77 4 0.04
78 62 0.63
79 31 0.32
80 1 0.01
ACGTcount: A:0.35, C:0.12, G:0.26, T:0.27
Consensus pattern (79 bp):
AATAACGGGGTTGGAGTATCCCTCGATAGTGAAAAATCAATGTTTTGAAAATAAAACCGGGATTA
GAGTATCCCCTAGA
Found at i:98419 original size:79 final size:78
Alignment explanation
Indices: 98230--98555 Score: 282
Period size: 79 Copynumber: 4.1 Consensus size: 78
98220 CCCGCTCAGT
* * * * * * * *
98230 AATAACGGGGTTGGAGTATCC-CTGATAGTGGAAGATCAATGTTTTGAAAATAAAATCGGGATTG
1 AATAATGGGGTAGGAGTATCCTC-GATTGTGAAAAATCGATGTTTTGAAAATAAAACCGGGGTTG
98294 GAGTATCCCTTCA-A
65 GAGTATCCCTT-AGA
* * * *
98308 AATAACGGGGTTGGAGTATCCTCGATTGTGAAAAATTGATGTTTTGAAAATAAAACCGGGGTTAG
1 AATAATGGGGTAGGAGTATCCTCGATTGTGAAAAATCGATGTTTTGAAAATAAAACCGGGGTTGG
*
98373 AGTATCCCCTAGGA
66 AGTATCCCTTA-GA
* * * * * **
98387 AATAATGGGGTAGGAGTATCCACGATTATGAAAAATCGGTATTTT-AGACATAAAAACTAGGGTT
1 AATAATGGGGTAGGAGTATCCTCGATTGTGAAAAATCGATGTTTTGA-AAAT-AAAACCGGGGTT
*
98451 GGAGTATCCCTTCGGA
64 GGAGTATCCCTT-AGA
* * * * * * ***
98467 CATAATAGGGTAGAAGTATCCTTGATGGTGAAAAATCGGTGTTTT-AGAAATAAAGTTGGGGTTG
1 AATAATGGGGTAGGAGTATCCTCGATTGTGAAAAATCGATGTTTTGA-AAATAAAACCGGGGTTG
98531 GAGTATCTCCTTAGA
65 GAGTATC-CCTTAGA
98546 AATAATGGGG
1 AATAATGGGG
98556 CTGGAGTGTC
Statistics
Matches: 204, Mismatches: 37, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
77 1 0.00
78 65 0.32
79 70 0.34
80 68 0.33
ACGTcount: A:0.33, C:0.11, G:0.27, T:0.29
Consensus pattern (78 bp):
AATAATGGGGTAGGAGTATCCTCGATTGTGAAAAATCGATGTTTTGAAAATAAAACCGGGGTTGG
AGTATCCCTTAGA
Found at i:98478 original size:80 final size:79
Alignment explanation
Indices: 98269--98555 Score: 269
Period size: 80 Copynumber: 3.6 Consensus size: 79
98259 GGAAGATCAA
* * * * * *
98269 TGTTTTGAAAATAAAATC-GGGATTGGAGTATCCCTTC-AAAATAACGGGGTTGGAGTATCCTCG
1 TGTTTT-AGAATAAAAACTGGGGTTGGAGTATCCCTTCGGAAATAATGGGGTAGGAGTATCCTCG
* *
98332 ATTGTGAAAAATTGA
65 ATTGTGAAAAATCGG
* * * * * *
98347 TGTTTT-GAAAATAAAACCGGGGTTAGAGTATCCCCTAGGAAATAATGGGGTAGGAGTATCCACG
1 TGTTTTAGAATA-AAAACTGGGGTTGGAGTATCCCTTCGGAAATAATGGGGTAGGAGTATCCTCG
*
98411 ATTATGAAAAATCGG
65 ATTGTGAAAAATCGG
* * * * * *
98426 TATTTTAGACATAAAAACTAGGGTTGGAGTATCCCTTCGGACATAATAGGGTAGAAGTATCCTTG
1 TGTTTTAGA-ATAAAAACTGGGGTTGGAGTATCCCTTCGGAAATAATGGGGTAGGAGTATCCTCG
*
98491 ATGGTGAAAAATCGG
65 ATTGTGAAAAATCGG
** *
98506 TGTTTTAGAA-ATAAAGTTGGGGTTGGAGTATCTCCTT-AGAAATAATGGGG
1 TGTTTTAGAATA-AAAACTGGGGTTGGAGTATC-CCTTCGGAAATAATGGGG
98556 CTGGAGTGTC
Statistics
Matches: 167, Mismatches: 35, Indels: 13
0.78 0.16 0.06
Matches are distributed among these distances:
76 3 0.02
77 4 0.02
78 22 0.13
79 67 0.40
80 69 0.41
81 2 0.01
ACGTcount: A:0.33, C:0.11, G:0.26, T:0.29
Consensus pattern (79 bp):
TGTTTTAGAATAAAAACTGGGGTTGGAGTATCCCTTCGGAAATAATGGGGTAGGAGTATCCTCGA
TTGTGAAAAATCGG
Found at i:106718 original size:13 final size:13
Alignment explanation
Indices: 106697--106726 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
106687 AATGTTCTAA
*
106697 GTATTGATACATT
1 GTATAGATACATT
106710 GTATAGATACATT
1 GTATAGATACATT
106723 GTAT
1 GTAT
106727 TGCTGTAGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.43
Consensus pattern (13 bp):
GTATAGATACATT
Found at i:109350 original size:19 final size:19
Alignment explanation
Indices: 109307--109379 Score: 83
Period size: 20 Copynumber: 3.7 Consensus size: 19
109297 CACATCTAGA
** *
109307 TGTATCGATACATTTTGCTT
1 TGTATCGATACATGCT-CAT
109327 TGTATCGATACATGCTCAT
1 TGTATCGATACATGCTCAT
*
109346 TGTATCGATACATACTCAAT
1 TGTATCGATACATGCTC-AT
*
109366 TGTATTGATACATG
1 TGTATCGATACATG
109380 AAACTGGCAA
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
19 18 0.39
20 28 0.61
ACGTcount: A:0.27, C:0.16, G:0.15, T:0.41
Consensus pattern (19 bp):
TGTATCGATACATGCTCAT
Found at i:112890 original size:66 final size:66
Alignment explanation
Indices: 112792--113048 Score: 194
Period size: 66 Copynumber: 3.9 Consensus size: 66
112782 TTTCATTTCG
* * *** * **
112792 ATCAACCCTTTTTTGACTTAGGTTCCACCCTAGTCATTTTTTGTTGGTTCATGTGGTTTCGT-CT
1 ATCAACTCTTTTTTGACTTAGGTTTCACCCTAGTCACCCTTTGTTGGTTCATATGGTTTAATCCT
112856 CA
66 -A
* *** * *
112858 ATCAACTCTTTTTTGACTTATGTTTTGTCCTAGTTACCCTTTGTTGGTTCCTATGGTTTAATCCT
1 ATCAACTCTTTTTTGACTTAGGTTTCACCCTAGTCACCCTTTGTTGGTTCATATGGTTTAATCCT
112923 A
66 A
* * * * * ** *
112924 ATCAACTCTTTTTCGACTTAGGTTTCACCTTGGTTACCCTTTGTTGTTTTGTATGGTTTCATACC
1 ATCAACTCTTTTTTGACTTAGGTTTCACCCTAGTCACCCTTTGTTGGTTCATATGGTTTAAT-CC
112989 -A
65 TA
* * ** * ** * **
112990 ACCAATTCAATTTTAACTTAGGTTTGGCCTTAGTCATGCTTTGTTGGTTCATATGGTTT
1 ATCAACTCTTTTTTGACTTAGGTTTCACCCTAGTCACCCTTTGTTGGTTCATATGGTTT
113049 TGTCCAAGCT
Statistics
Matches: 149, Mismatches: 40, Indels: 4
0.77 0.21 0.02
Matches are distributed among these distances:
66 145 0.97
67 4 0.03
ACGTcount: A:0.17, C:0.20, G:0.16, T:0.47
Consensus pattern (66 bp):
ATCAACTCTTTTTTGACTTAGGTTTCACCCTAGTCACCCTTTGTTGGTTCATATGGTTTAATCCT
A
Found at i:113263 original size:66 final size:65
Alignment explanation
Indices: 113188--113436 Score: 203
Period size: 66 Copynumber: 3.8 Consensus size: 65
113178 TGTCCGGACT
* * * * * *
113188 AACTCCTTTTTGACTTAGGTTTTATCCTGGTCACACTTTGTTGATTTGTATGATTTCATCCCAGT
1 AACTACTTTTCGACTTAGGTTTCA-CCTGGTCACACTTTGTTGATTCGTATGATTTCATCCTAGC
113253 C
65 C
* * * * * * * * *
113254 AACTACTTTTCAACCTAGGTTCCACTCTCGTCACATTTTGTTGGTTTGTATAATTTCAAT-CTGG
1 AACTACTTTTCGACTTAGGTTTCAC-CTGGTCACACTTTGTTGATTCGTATGATTTC-ATCCTAG
113318 CC
64 CC
** * ** * * * *
113320 AACTTTTTTTCGACTAAGGTTTCACCATGGTCACTTTTTGTTGATTCATATGGTTTTATCCTTGC
1 AACTACTTTTCGACTTAGGTTTCACC-TGGTCACACTTTGTTGATTCGTATGATTTCATCCTAGC
113385 C
65 C
* * *
113386 AACTACTTTTCGACTTAGGTTTCATCTTGGTCACCCTTTTTTGATTCGTAT
1 AACTACTTTTCGACTTAGGTTTCA-CCTGGTCACACTTTGTTGATTCGTAT
113437 AGTCTTGTCC
Statistics
Matches: 142, Mismatches: 36, Indels: 10
0.76 0.19 0.05
Matches are distributed among these distances:
65 4 0.03
66 135 0.95
67 3 0.02
ACGTcount: A:0.19, C:0.22, G:0.14, T:0.45
Consensus pattern (65 bp):
AACTACTTTTCGACTTAGGTTTCACCTGGTCACACTTTGTTGATTCGTATGATTTCATCCTAGCC
Found at i:113454 original size:66 final size:65
Alignment explanation
Indices: 113326--113460 Score: 146
Period size: 66 Copynumber: 2.1 Consensus size: 65
113316 GGCCAACTTT
* * * ***
113326 TTTTCGACTAAGGTTTCACCATGGTCACTTTTTGTTGATTCATATGGTTTTATCCTTGCCAACTA
1 TTTTCGACTAAGGTTTCACCATGGTCACCTTTTGTTGATTCATATAGTCTTATCCCAACCAACT-
113391 C
65 C
* * * * *
113392 TTTTCGACTTAGGTTTCATCTTGGTCACCCTTTT-TTGATTCGTATAGTCTTGTCCCAACCAACT
1 TTTTCGACTAAGGTTTCACCATGGTCA-CCTTTTGTTGATTCATATAGTCTTATCCCAACCAACT
113456 C
65 C
113457 TTTT
1 TTTT
113461 TTGACCAAAG
Statistics
Matches: 57, Mismatches: 11, Indels: 3
0.80 0.15 0.04
Matches are distributed among these distances:
65 5 0.09
66 47 0.82
67 5 0.09
ACGTcount: A:0.18, C:0.23, G:0.14, T:0.45
Consensus pattern (65 bp):
TTTTCGACTAAGGTTTCACCATGGTCACCTTTTGTTGATTCATATAGTCTTATCCCAACCAACTC
Found at i:113534 original size:18 final size:18
Alignment explanation
Indices: 113511--113546 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
113501 GCCAACTCCT
113511 TTTCAACTTAAATTCTAC
1 TTTCAACTTAAATTCTAC
113529 TTTCAACTTAAATTCTAC
1 TTTCAACTTAAATTCTAC
113547 CTCGGTCACC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.22, G:0.00, T:0.44
Consensus pattern (18 bp):
TTTCAACTTAAATTCTAC
Found at i:113694 original size:132 final size:133
Alignment explanation
Indices: 113529--113839 Score: 333
Period size: 132 Copynumber: 2.4 Consensus size: 133
113519 TAAATTCTAC
** * *
113529 TTTCAACTTAA-ATTCTACCTCGGTCACCCTTTGTTATTTTGTATGGTTTCGTCCC-GACTACTT
1 TTTCAACTTAAGATTCTACCTTAGTCACCCTTTGTTAGTTTGTATGGTTTCGTCCCAGACAAC-T
* * * * * *
113592 CCTTTTCAACTTAGGTTCCATCCTAGTTACCTTTTGTTGGTTAATATGTTTTTGTCCTAGCCAAC
65 CCTTTTCAACTTAGGTTCCACCCTAATCACCCTTAGTTGGTTAATATGGTTTTGTCCTAGCCAAC
*
113657 TCCT
130 TCAT
* * ** *
113661 TTTCAACTTAAGTTTC-ACCTTAGTCACCCTTTGTTGGTTTGTATGGTTTTTTCCCAGCCAACTC
1 TTTCAACTTAAGATTCTACCTTAGTCACCCTTTGTTAGTTTGTATGGTTTCGTCCCAGACAACTC
* * * * *
113725 CTTTTTAACTTAGGTTCTACCCTAATCACCCTTAGTTGGTTCATATGGTTTTGTCCTTGTCAACT
66 CTTTTCAACTTAGGTTCCACCCTAATCACCCTTAGTTGGTTAATATGGTTTTGTCCTAGCCAACT
113790 CAT
131 CAT
** * * * * *
113793 TTTTGACTT-AGATTCTGCCTTAGTCACCCCTAGTTAGGTTGCATGGT
1 TTTCAACTTAAGATTCTACCTTAGTCACCCTTTGTTAGTTTGTATGGT
113840 GTTATCCTAA
Statistics
Matches: 146, Mismatches: 30, Indels: 6
0.80 0.16 0.03
Matches are distributed among these distances:
131 5 0.03
132 134 0.92
133 7 0.05
ACGTcount: A:0.18, C:0.24, G:0.14, T:0.44
Consensus pattern (133 bp):
TTTCAACTTAAGATTCTACCTTAGTCACCCTTTGTTAGTTTGTATGGTTTCGTCCCAGACAACTC
CTTTTCAACTTAGGTTCCACCCTAATCACCCTTAGTTGGTTAATATGGTTTTGTCCTAGCCAACT
CAT
Found at i:113796 original size:66 final size:66
Alignment explanation
Indices: 113594--114397 Score: 257
Period size: 66 Copynumber: 12.3 Consensus size: 66
113584 GACTACTTCC
* * * * * * * *
113594 TTTTCAACTTAGGTTCCATCCTAGTTACCTTTTGTTGGTTAATATGTTTTTGTCCTAGCCAACTC
1 TTTTCAACTTAGGTTCTACCCTAGTCACCCTTAGTTGGTTCATATGGTTTTATCCTAGCCAACTC
*
113659 C
66 A
* * * ** * *
113660 TTTTCAACTTAAGTT-TCACCTTAGTCACCCTTTGTTGGTTTGTATGGTTTTTTCCCAGCCAACT
1 TTTTCAACTTAGGTTCT-ACCCTAGTCACCCTTAGTTGGTTCATATGGTTTTATCCTAGCCAACT
*
113724 CC
65 CA
* * * * *
113726 TTTTTAACTTAGGTTCTACCCTAATCACCCTTAGTTGGTTCATATGGTTTTGTCCTTGTCAACTC
1 TTTTCAACTTAGGTTCTACCCTAGTCACCCTTAGTTGGTTCATATGGTTTTATCCTAGCCAACTC
113791 A
66 A
** * * * * * *
113792 TTTTTGACTTAGATTCTGCCTTAGTCACCCCTAGTTAGGTTGC--ATGGTGTTATCCTAACCAAT
1 TTTTCAACTTAGGTTCTACCCTAGTCACCCTTAGTT-GGTT-CATATGGTTTTATCCTAGCCAA-
* **
113855 TTTTT
63 -CTCA
** * * * * *
113860 TTTTTTACTTAGGTTCTGCCCTATTCACCCTTTA-TTGGTTCATATGGTTTTAT-TTTGACTAAC
1 TTTTCAACTTAGGTTCTACCCTAGTCACCC-TTAGTTGGTTCATATGGTTTTATCCTAG-CCAAC
113923 TCA
64 TCA
* * * * * * * *
113926 TTTTCGACTTAGGTTCCA-CCTTGGCACTCTTTA-TTAGTTCATATGGTTTTATCTTTGCCAACT
1 TTTTCAACTTAGGTTCTACCCTAGTCAC-CCTTAGTTGGTTCATATGGTTTTATCCTAGCCAACT
*
113989 TA
65 CA
** * * * * ** ** ** * *
113991 TTTTTGGA-TTAGGTTCTGCCTTGGTTATTCTTTTTTGGTTTGTATGGTTTTATCATAGCTAACA
1 -TTTTCAACTTAGGTTCTACCCTAGTCACCCTTAGTTGGTTCATATGGTTTTATCCTAGCCAAC-
*
114055 CCA
64 TCA
* *** * ** *
114058 TTTT-AACTTAGGTTCCACCCTAGTCATGTTTTA-TTGGTTCATTTGGGTTTT-TCCTCTCCATC
1 TTTTCAACTTAGGTTCTACCCTAGTCA-CCCTTAGTTGGTTCATAT-GGTTTTATCCTAGCCAAC
*
114120 T-T
64 TCA
** * * ** * * * **
114122 TTTTTTACATAGGTTCCACCCTAGTCACCCTTTA-TTACTTCATATGGTTTCATCTTGGGTAACT
1 TTTTCAACTTAGGTTCTACCCTAGTCACCC-TTAGTTGGTTCATATGGTTTTATCCTAGCCAACT
114186 C-
65 CA
** ** * * * * * * * *
114187 TTTTGTGACTTAGGTTCTTTCCTAGTCACCTTTTGCTAGTTTATATGGTTTTATCTTGGCTAACT
1 TTTT-CAACTTAGGTTCTACCCTAGTCACCCTTAGTTGGTTCATATGGTTTTATCCTAGCCAACT
114252 C-
65 CA
* * * * * * *
114253 TTTT--TC-GAGGTTCTACTCT-GATCACCCTTTGTTGGTTCATATGGTTTTGTTCCTA-CTAAT
1 TTTTCAACTTAGGTTCTACCCTAG-TCACCCTTAGTTGGTTCATATGGTTTT-ATCCTAGCCAAC
*
114313 TCC
64 TCA
* * *** * * * ** *
114316 TTTTTAACTTAAGTT-TTGTCTAGTTATCCTCT-GTTCGTTTGTATGGTTTCATCCTAGCCAACT
1 TTTTCAACTTAGGTTCTACCCTAGTCACCCT-TAGTTGGTTCATATGGTTTTATCCTAGCCAACT
*
114379 CC
65 CA
114381 TTTTCAACTTAGGTTCT
1 TTTTCAACTTAGGTTCT
114398 GCCTCTTATC
Statistics
Matches: 548, Mismatches: 155, Indels: 70
0.71 0.20 0.09
Matches are distributed among these distances:
61 1 0.00
62 38 0.07
63 8 0.01
64 14 0.03
65 130 0.24
66 293 0.53
67 20 0.04
68 42 0.08
69 2 0.00
ACGTcount: A:0.17, C:0.21, G:0.15, T:0.47
Consensus pattern (66 bp):
TTTTCAACTTAGGTTCTACCCTAGTCACCCTTAGTTGGTTCATATGGTTTTATCCTAGCCAACTC
A
Found at i:114382 original size:65 final size:66
Alignment explanation
Indices: 114313--114453 Score: 160
Period size: 67 Copynumber: 2.1 Consensus size: 66
114303 TCCTACTAAT
* * * * * **
114313 TCCTTTTTAACTTAAGTTTTGTCTAGTTAT-CC-TCTGTTCGTTTGTATGGTTTCATCCTAGCCA
1 TCCTTTTCAACTTAAGTTCTGCCT-CTTATACCTTCTGTTAGTTTGTATGGTTTCATCCTAAACA
114376 AC
65 AC
* *
114378 TCCTTTTCAACTTAGGTTCTGCCTCTTATCACCTTTTGTTAGTTTGTATGGTTTCATCCTAAACA
1 TCCTTTTCAACTTAAGTTCTGCCTCTTAT-ACCTTCTGTTAGTTTGTATGGTTTCATCCTAAACA
114443 AC
65 AC
*
114445 TCCATTTCA
1 TCCTTTTCA
114454 CGCTAGTCAC
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
64 4 0.06
65 20 0.32
66 2 0.03
67 37 0.59
ACGTcount: A:0.18, C:0.23, G:0.12, T:0.46
Consensus pattern (66 bp):
TCCTTTTCAACTTAAGTTCTGCCTCTTATACCTTCTGTTAGTTTGTATGGTTTCATCCTAAACAA
C
Found at i:115619 original size:65 final size:65
Alignment explanation
Indices: 115487--115714 Score: 221
Period size: 65 Copynumber: 3.5 Consensus size: 65
115477 CCCAGCCAAT
* * * * *
115487 TTCTTTTCAACTTAAGTTTCACCCTAGTCAC-C-TT-TTGTTGATTCATATAGTTTCATCTTGGC
1 TTCTTTTCAACTTAAGTTCCA-CCTAGTCACACATTCTTG--GCTTGA-ATGGTTTTATCTTGGC
*
115549 CAAC
62 TAAC
** * * * *
115553 TTCTTTTGGATTTAAGTTCCATCTAGTCACACATTCTTGGTTTGAATGGTTTTGTCTTGGCTAAC
1 TTCTTTTCAACTTAAGTTCCACCTAGTCACACATTCTTGGCTTGAATGGTTTTATCTTGGCTAAC
* * * *
115618 TTCTTTTCAACTTATGTTCCACCTAGTCACACATTCTTTGCTTGAATGGTTTTATCCTAGCTAAC
1 TTCTTTTCAACTTAAGTTCCACCTAGTCACACATTCTTGGCTTGAATGGTTTTATCTTGGCTAAC
*
115683 TTCTTTTCAACTTATGTTCTGC-CCTAGTCACA
1 TTCTTTTCAACTTAAGTTC--CACCTAGTCACA
115715 TTTTTTTGGT
Statistics
Matches: 136, Mismatches: 21, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
65 98 0.72
66 32 0.24
67 3 0.02
68 3 0.02
ACGTcount: A:0.20, C:0.23, G:0.13, T:0.44
Consensus pattern (65 bp):
TTCTTTTCAACTTAAGTTCCACCTAGTCACACATTCTTGGCTTGAATGGTTTTATCTTGGCTAAC
Found at i:116348 original size:66 final size:66
Alignment explanation
Indices: 116228--116877 Score: 229
Period size: 66 Copynumber: 10.0 Consensus size: 66
116218 GGTTCTGCCT
* * * *
116228 TAGTCACCCTAT-TTGGCTCGTATGGTTTTATCTTAGTTAGCTCCTTTTTGACTTAAGTTCCATC
1 TAGTCACCCTTTGTTGGCTCGTATGGTTTCATCTTAGTCAACTCCTTTTTGACTTAAGTTCCATC
116292 C
66 C
* * * ** * * *
116293 TAGTCACCCTTTGTTGGTTTGTATGGTTTCATTTTAGTCAACTTTTTTTTTACTTAGGTTTCATC
1 TAGTCACCCTTTGTTGGCTCGTATGGTTTCATCTTAGTCAACTCCTTTTTGACTTAAGTTCCATC
*
116358 T
66 C
* * * * ** * * * **
116359 TGGTCACCCTTTGTT-GC-AGTATGGTGTCGTCACAGCCAACTCATTTTT-AGCTTAGGTTTTAT
1 TAGTCACCCTTTGTTGGCTCGTATGGTTTCATCTTAGTCAACTCCTTTTTGA-CTTAAGTTCCAT
116421 CC
65 CC
** * * ** * * ** *
116423 TAGTCATGCTCTGTTGGTTTATGTGGTTTCATCCTAG-CTAACTCCTTTTCAACTTAGGTT-C-T
1 TAGTCACCCTTTGTTGGCTCGTATGGTTTCATCTTAGTC-AACTCCTTTTTGACTTAAGTTCCAT
116485 GCC
65 -CC
* * * * * * *
116488 TTAGTCATCCTTTGTTGGTTCGTATGGTTTTATCTTAG-CAAAATCTTTTTTGACTTATGTTTCA
1 -TAGTCACCCTTTGTTGGCTCGTATGGTTTCATCTTAGTC-AACTCCTTTTTGACTTAAGTTCCA
*
116552 CCC
64 TCC
* * ** * * * * * * *
116555 TAGTCACCCTTTATTGGTTCACATGGTTTCTTCTTAGTTAACTCTTTTTTTACTTAGGTT--TTG
1 TAGTCACCCTTTGTTGGCTCGTATGGTTTCATCTTAGTCAACTCCTTTTTGACTTAAGTTCCATC
116618 C
66 C
* * * * * * * * *
116619 TCAGTCACCATTTGTTGGTTCATATGGTTTTATCTCA-CCTAACTTCTTTTTGACTTAGGTT--T
1 T-AGTCACCCTTTGTTGGCTCGTATGGTTTCATCTTAGTC-AACTCCTTTTTGACTTAAGTTCCA
116681 TGCC
64 T-CC
** * * * * * * * * *
116685 TTCA-TCATTCTTTGTTGGTTTGTACGGTTTAATCCTAG-CAACTTCTTTTTAACTTAGGTT--T
1 -T-AGTCACCCTTTGTTGGCTCGTATGGTTTCATCTTAGTCAACTCCTTTTTGACTTAAGTTCCA
116746 TGCC
64 T-CC
* * * * * * * * * * **
116750 TAGTCAACCTTTGTTTGTTTGTAT-ATTTTATCCTGGCCAACTCCTTTTTGACTTAAGTTTCGCC
1 TAGTCACCCTTTGTTGGCTCGTATGGTTTCATCTTAGTCAACTCCTTTTTGACTTAAGTTCCATC
116814 C
66 C
* * * * * * * *
116815 TTGTCACCCTTTATTGGTTTGTATGTTTTCATCCTAGCCAACTCCTTTTCGACTTAAGTTCCA
1 TAGTCACCCTTTGTTGGCTCGTATGGTTTCATCTTAGTCAACTCCTTTTTGACTTAAGTTCCA
116878 CTATTGTCAC
Statistics
Matches: 452, Mismatches: 112, Indels: 41
0.75 0.19 0.07
Matches are distributed among these distances:
63 11 0.02
64 85 0.19
65 112 0.25
66 237 0.52
67 7 0.02
ACGTcount: A:0.17, C:0.21, G:0.16, T:0.47
Consensus pattern (66 bp):
TAGTCACCCTTTGTTGGCTCGTATGGTTTCATCTTAGTCAACTCCTTTTTGACTTAAGTTCCATC
C
Found at i:116703 original size:131 final size:132
Alignment explanation
Indices: 116446--116875 Score: 345
Period size: 131 Copynumber: 3.3 Consensus size: 132
116436 TTGGTTTATG
* *
116446 TGGTTTCATCCTAGCTAACTCCTTTTCAACTTAGGTTCTGCCTTAGTCATCCTTTGTTGGTTCGT
1 TGGTTTCATCCTAGCTAACTCCTTTTCAACTTAGGTTCTGCCTCAGTCATCCTTTGTTGGTTCAT
* * *
116511 ATGGTTTTATCTTAGCAAAATCTTTTTTGACTTATGTTTCACCCTAGTCACCCTTTATTGGTTCA
66 ATGGTTTTATCTCACCAAAATCTTTTTTGACTTAGGTTTCACCCTAGTCACCCTTTATTGGTTCA
116576 CA
131 CA
* * * * ** *
116578 TGGTTTCTTCTTAGTTAACTCTTTTTTTACTTAGGTTTTG-CTCAGTCA-CCATTTGTTGGTTCA
1 TGGTTTCATCCTAGCTAACTCCTTTTCAACTTAGGTTCTGCCTCAGTCATCC-TTTGTTGGTTCA
* * ** * ** *
116641 TATGGTTTTATCTCACCTAACT-TCTTTTTGACTTAGGTTTTGCCTTCA-TCATTCTTTGTTGGT
65 TATGGTTTTATCTCACCAAAATCT-TTTTTGACTTAGGTTTCACCCT-AGTCACCCTTTATTGGT
***
116704 TTGTA
128 TCACA
* * * * * * * **
116709 CGGTTTAATCCTAGC-AACTTCTTTTTAACTTAGGTTTTGCCT-AGTCAACCTTTGTTTGTTTGT
1 TGGTTTCATCCTAGCTAACTCCTTTTCAACTTAGGTTCTGCCTCAGTCATCCTTTGTTGGTTCAT
* ** * * * * * *
116772 AT-ATTTTATCCTGGCC-AACTCCTTTTTGACTTAAGTTTCGCCCTTGTCACCCTTTATTGGTTT
66 ATGGTTTTAT-CTCACCAAAATCTTTTTTGACTTAGGTTTCACCCTAGTCACCCTTTATTGGTTC
**
116835 GTA
130 ACA
* * * *
116838 TGTTTTCATCCTAGCCAACTCCTTTTCGACTTAAGTTC
1 TGGTTTCATCCTAGCTAACTCCTTTTCAACTTAGGTTC
116876 CACTATTGTC
Statistics
Matches: 236, Mismatches: 53, Indels: 20
0.76 0.17 0.06
Matches are distributed among these distances:
129 58 0.25
130 62 0.26
131 82 0.35
132 34 0.14
ACGTcount: A:0.17, C:0.21, G:0.14, T:0.47
Consensus pattern (132 bp):
TGGTTTCATCCTAGCTAACTCCTTTTCAACTTAGGTTCTGCCTCAGTCATCCTTTGTTGGTTCAT
ATGGTTTTATCTCACCAAAATCTTTTTTGACTTAGGTTTCACCCTAGTCACCCTTTATTGGTTCA
CA
Found at i:117074 original size:64 final size:64
Alignment explanation
Indices: 116953--117145 Score: 199
Period size: 65 Copynumber: 3.0 Consensus size: 64
116943 CTCCTTTTCG
* ** * * *
116953 ACTTAGGTTTTGCCTGCGTCATTCTTTGTTGGTTTGTACGGTTTAATACTAG-CAACTTCTTTTT
1 ACTTAGGTTTTGCCT-AGTCAACCTTTGTTGGTTTGTA-TGTTTTATCCTAGCCAACTTCTTTTT
117017 A
64 A
* * *
117018 ACTTAGGTTTTGCCTAGTCAACCTTTGTTGGTTTGTATATTTTATCCTGGCCAACTTCTTTTTG
1 ACTTAGGTTTTGCCTAGTCAACCTTTGTTGGTTTGTATGTTTTATCCTAGCCAACTTCTTTTTA
* * * * * * *
117082 ACTTAAGTTTCGCCCTTGTCACCCTTTATTGGTTTGTATGTTTTCATCCTAACCAACTCCTTTT
1 ACTTAGGTTTTG-CCTAGTCAACCTTTGTTGGTTTGTATGTTTT-ATCCTAGCCAACTTCTTTT
117146 CGACTCAAGT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
63 8 0.07
64 41 0.38
65 42 0.39
66 16 0.15
ACGTcount: A:0.17, C:0.21, G:0.16, T:0.47
Consensus pattern (64 bp):
ACTTAGGTTTTGCCTAGTCAACCTTTGTTGGTTTGTATGTTTTATCCTAGCCAACTTCTTTTTA
Found at i:117145 original size:66 final size:65
Alignment explanation
Indices: 117005--117169 Score: 188
Period size: 66 Copynumber: 2.5 Consensus size: 65
116995 TTAATACTAG
* * * * * * **
117005 CAACTTCTTTTTAACTTAGGTTTTG-CCTAGTCAACCTTTGTTGGTTTGTATATTTTATCCTGGC
1 CAACTTCTTTTTGACTTAAGTTTCGCCCTTGTCACCCTTTATTGGTTTGTATATTTTATCCTAAC
*
117069 CAACTTCTTTTTGACTTAAGTTTCGCCCTTGTCACCCTTTATTGGTTTGTATGTTTTCATCCTAA
1 CAACTTCTTTTTGACTTAAGTTTCGCCCTTGTCACCCTTTATTGGTTTGTATATTTT-ATCCTAA
117134 C
65 C
* * * * *
117135 CAACTCCTTTTCGACTCAAGTTCCACCCTTGTCAC
1 CAACTTCTTTTTGACTTAAGTTTCGCCCTTGTCAC
117170 ATTTTTTCAC
Statistics
Matches: 85, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
64 22 0.26
65 27 0.32
66 36 0.42
ACGTcount: A:0.18, C:0.25, G:0.13, T:0.44
Consensus pattern (65 bp):
CAACTTCTTTTTGACTTAAGTTTCGCCCTTGTCACCCTTTATTGGTTTGTATATTTTATCCTAAC
Found at i:117177 original size:282 final size:282
Alignment explanation
Indices: 116659--117491 Score: 1531
Period size: 282 Copynumber: 3.0 Consensus size: 282
116649 TATCTCACCT
* * * *
116659 AACTTCTTTTTGACTTAGGTTTTGCCTTCATCATTCTTTGTTGGTTTGTACGGTTTAATCCTAGC
1 AACTCCTTTTCGACTTAGGTTTTGCCTGCGTCATTCTTTGTTGGTTTGTACGGTTTAATCCTAGC
*
116724 AACTTCTTTTTAACTTAGGTTTTGCCTAGTCAACCTTTGTTTGTTTGTATATTTTATCCTGGCCA
66 AACTTCTTTTTAACTTAGGTTTTGCCTAGTCAACCTTTGTTGGTTTGTATATTTTATCCTGGCCA
* *
116789 ACTCCTTTTTGACTTAAGTTTCGCCCTTGTCACCCTTTATTGGTTTGTATGTTTTCATCCTAGCC
131 ACTTCTTTTTGACTTAAGTTTCGCCCTTGTCACCCTTTATTGGTTTGTATGTTTTCATCCTAACC
* ** *
116854 AACTCCTTTTCGACTTAAGTTCCACTATTGTCACCTTTTTTCACTACGTATGGTTTCCTCTTAGC
196 AACTCCTTTTCGACTCAAGTTCCACCCTTGTCACATTTTTTCACTACGTATGGTTTCCTCTTAGC
116919 TAATTTTTTGTTTTTTACTATC
261 TAATTTTTTGTTTTTTACTATC
*
116941 AACTCCTTTTCGACTTAGGTTTTGCCTGCGTCATTCTTTGTTGGTTTGTACGGTTTAATACTAGC
1 AACTCCTTTTCGACTTAGGTTTTGCCTGCGTCATTCTTTGTTGGTTTGTACGGTTTAATCCTAGC
117006 AACTTCTTTTTAACTTAGGTTTTGCCTAGTCAACCTTTGTTGGTTTGTATATTTTATCCTGGCCA
66 AACTTCTTTTTAACTTAGGTTTTGCCTAGTCAACCTTTGTTGGTTTGTATATTTTATCCTGGCCA
117071 ACTTCTTTTTGACTTAAGTTTCGCCCTTGTCACCCTTTATTGGTTTGTATGTTTTCATCCTAACC
131 ACTTCTTTTTGACTTAAGTTTCGCCCTTGTCACCCTTTATTGGTTTGTATGTTTTCATCCTAACC
117136 AACTCCTTTTCGACTCAAGTTCCACCCTTGTCACATTTTTTCACTACGTATGGTTTCCTCTTAGC
196 AACTCCTTTTCGACTCAAGTTCCACCCTTGTCACATTTTTTCACTACGTATGGTTTCCTCTTAGC
117201 TAATTTTTTGTTTTTTACTATC
261 TAATTTTTTGTTTTTTACTATC
117223 AACTCCTTTTCGACTTAGGTTTTGCCTGCGTCATTCTTTGTTGGTTTGTACGGTTTAATCCTAGC
1 AACTCCTTTTCGACTTAGGTTTTGCCTGCGTCATTCTTTGTTGGTTTGTACGGTTTAATCCTAGC
117288 AACTTCTTTTTAACTTAGGTTTTGCCTAGTCAACCTTTGTTGGTTTGTATATTTTATCCTGGCCA
66 AACTTCTTTTTAACTTAGGTTTTGCCTAGTCAACCTTTGTTGGTTTGTATATTTTATCCTGGCCA
117353 ACTTCTTTTTGACTTAAGTTTCGCCCTTGTCACCCTTTATTGGTTTGTATGTTTTCATCCTAACC
131 ACTTCTTTTTGACTTAAGTTTCGCCCTTGTCACCCTTTATTGGTTTGTATGTTTTCATCCTAACC
* * *
117418 AACTCCTTTTCGACTCAAGTTCCACCCTTGTCACATTTTTTCACTACGTATGGTTTTCTCTCAAC
196 AACTCCTTTTCGACTCAAGTTCCACCCTTGTCACATTTTTTCACTACGTATGGTTTCCTCTTAGC
117483 TAATTTTTT
261 TAATTTTTT
117492 TTCTTTGGTT
Statistics
Matches: 535, Mismatches: 16, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
282 535 1.00
ACGTcount: A:0.17, C:0.22, G:0.14, T:0.47
Consensus pattern (282 bp):
AACTCCTTTTCGACTTAGGTTTTGCCTGCGTCATTCTTTGTTGGTTTGTACGGTTTAATCCTAGC
AACTTCTTTTTAACTTAGGTTTTGCCTAGTCAACCTTTGTTGGTTTGTATATTTTATCCTGGCCA
ACTTCTTTTTGACTTAAGTTTCGCCCTTGTCACCCTTTATTGGTTTGTATGTTTTCATCCTAACC
AACTCCTTTTCGACTCAAGTTCCACCCTTGTCACATTTTTTCACTACGTATGGTTTCCTCTTAGC
TAATTTTTTGTTTTTTACTATC
Found at i:117306 original size:65 final size:64
Alignment explanation
Indices: 117235--117427 Score: 190
Period size: 64 Copynumber: 3.0 Consensus size: 64
117225 CTCCTTTTCG
* ** *
117235 ACTTAGGTTTTGCCTGCGTCATTCTTTGTTGGTTTGTACGGTTTAATCCTAG-CAACTTCTTTTT
1 ACTTAGGTTTTGCCT-AGTCAACCTTTGTTGGTTTGTA-GATTTAATCCTAGCCAACTTCTTTTT
117299 A
64 A
* * * *
117300 ACTTAGGTTTTGCCTAGTCAACCTTTGTTGGTTTGTATATTTTATCCTGGCCAACTTCTTTTTG
1 ACTTAGGTTTTGCCTAGTCAACCTTTGTTGGTTTGTAGATTTAATCCTAGCCAACTTCTTTTTA
* * * * * * * * *
117364 ACTTAAGTTTCGCCCTTGTCACCCTTTATTGGTTTGTATGTTTTCATCCTAACCAACTCCTTTT
1 ACTTAGGTTTTG-CCTAGTCAACCTTTGTTGGTTTGTA-GATTTAATCCTAGCCAACTTCTTTT
117428 CGACTCAAGT
Statistics
Matches: 106, Mismatches: 19, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
63 9 0.08
64 41 0.39
65 37 0.35
66 19 0.18
ACGTcount: A:0.16, C:0.21, G:0.16, T:0.47
Consensus pattern (64 bp):
ACTTAGGTTTTGCCTAGTCAACCTTTGTTGGTTTGTAGATTTAATCCTAGCCAACTTCTTTTTA
Found at i:117356 original size:64 final size:64
Alignment explanation
Indices: 117235--117427 Score: 208
Period size: 65 Copynumber: 3.0 Consensus size: 64
117225 CTCCTTTTCG
* ** * *
117235 ACTTAGGTTTTGCCTGCGTCATTCTTTGTTGGTTTGTACGGTTTAATCCTAG-CAACTTCTTTTT
1 ACTTAGGTTTTGCCT-AGTCAACCTTTGTTGGTTTGTA-TGTTTTATCCTAGCCAACTTCTTTTT
117299 A
64 A
* * *
117300 ACTTAGGTTTTGCCTAGTCAACCTTTGTTGGTTTGTATATTTTATCCTGGCCAACTTCTTTTTG
1 ACTTAGGTTTTGCCTAGTCAACCTTTGTTGGTTTGTATGTTTTATCCTAGCCAACTTCTTTTTA
* * * * * * *
117364 ACTTAAGTTTCGCCCTTGTCACCCTTTATTGGTTTGTATGTTTTCATCCTAACCAACTCCTTTT
1 ACTTAGGTTTTG-CCTAGTCAACCTTTGTTGGTTTGTATGTTTT-ATCCTAGCCAACTTCTTTT
117428 CGACTCAAGT
Statistics
Matches: 108, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
63 9 0.08
64 41 0.38
65 42 0.39
66 16 0.15
ACGTcount: A:0.16, C:0.21, G:0.16, T:0.47
Consensus pattern (64 bp):
ACTTAGGTTTTGCCTAGTCAACCTTTGTTGGTTTGTATGTTTTATCCTAGCCAACTTCTTTTTA
Found at i:118108 original size:66 final size:66
Alignment explanation
Indices: 117909--118116 Score: 211
Period size: 66 Copynumber: 3.2 Consensus size: 66
117899 TAGTCAACCA
** * * ** * *
117909 TTGTTGGTTCACATGGTTTCATCCTAGCTAACTCCTTTTTAATCTAAG-TTTTGCCTTAGTCACC
1 TTGTTGGTTCGTATGGTTTCATCCTAGCCAACTCCTTTTTAA-CTTAGCTTTTGCCCCAATCAAC
*
117973 CT
65 TT
** ** * *** *
117975 TAATTGGTTTTTATGGTTTCATCCTAGCCAACTCCTTTTTAACTTAGGTTTTGCCCTGGTCATCT
1 TTGTTGGTTCGTATGGTTTCATCCTAGCCAACTCCTTTTTAACTTAGCTTTTGCCCCAATCAACT
118040 T
66 T
* * *
118041 TTGTTGGTTCGTATGGTTTCATCCTAGCCAATTCTTTTTTTACTTAGCTTTTGCCCCAATCAACT
1 TTGTTGGTTCGTATGGTTTCATCCTAGCCAACTCCTTTTTAACTTAGCTTTTGCCCCAATCAACT
118106 T
66 T
118107 TTGTTGGTTC
1 TTGTTGGTTC
118117 ATAGCTAACT
Statistics
Matches: 118, Mismatches: 23, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
65 4 0.03
66 114 0.97
ACGTcount: A:0.16, C:0.22, G:0.15, T:0.47
Consensus pattern (66 bp):
TTGTTGGTTCGTATGGTTTCATCCTAGCCAACTCCTTTTTAACTTAGCTTTTGCCCCAATCAACT
T
Found at i:118234 original size:119 final size:119
Alignment explanation
Indices: 117999--118213 Score: 297
Period size: 118 Copynumber: 1.8 Consensus size: 119
117989 GGTTTCATCC
* * * *
117999 TAGCCAACTCCTTTTTAACTTAGGTTTTGCCCTGGTCATCTTTTGTTGGTTCGTATGGTTTCATC
1 TAGCCAACTCCTTTTTAACTTAGGTTTTGCCCTAGTCACCCTTTGTTGGTTCGTATGGTTCCATC
* * * **
118064 CTAGCCAATTCTTTTTTTACTTAGCTTTTGCCCCAATCAACTTTTGTTGGTTCA
66 CCACCCAATCCTTTTTCGACTTAGCTTTTGCCCCAATCAACTTTTGTTGGTTCA
* * *
118118 TAGCTAACTCCTTTTTAACTTA-GTTTTGCCCTAGTGACCCTTTGTTGGTTTGTATGGTTCCATC
1 TAGCCAACTCCTTTTTAACTTAGGTTTTGCCCTAGTCACCCTTTGTTGGTTCGTATGGTTCCATC
*
118182 CCACCCAATCCCTTTTTCGACTTAGGTTTTGC
66 CCACCCAAT-CCTTTTTCGACTTAGCTTTTGC
118214 TTTTGTCACT
Statistics
Matches: 82, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
118 43 0.52
119 39 0.48
ACGTcount: A:0.16, C:0.24, G:0.15, T:0.45
Consensus pattern (119 bp):
TAGCCAACTCCTTTTTAACTTAGGTTTTGCCCTAGTCACCCTTTGTTGGTTCGTATGGTTCCATC
CCACCCAATCCTTTTTCGACTTAGCTTTTGCCCCAATCAACTTTTGTTGGTTCA
Found at i:118398 original size:66 final size:66
Alignment explanation
Indices: 118274--118438 Score: 168
Period size: 66 Copynumber: 2.5 Consensus size: 66
118264 TCAACTTTTG
* * * * * * * *
118274 CCCTAGTCACCCTTTGTTGGTTTGTATGTTTTTGCCCTGGCCAACTCTTTTTCGACTTAAGTTCC
1 CCCTTGTCACCCTTTATTGGTTTGTATGTTTTCGCCCTAGCCAACTCCTATTCAACTTAAATTCC
118339 A
66 A
* ** * *
118340 CCCTTGTCACCCTTTATTGGTTTGTATGTTTTCGTCCTAGTGAGCTCCTATTCAACTTAAATTCT
1 CCCTTGTCACCCTTTATTGGTTTGTATGTTTTCGCCCTAGCCAACTCCTATTCAACTTAAATTCC
118405 A
66 A
** * * *
118406 CTATTGTCACCTTTTTTTGGTTTGTATGGTTTC
1 CCCTTGTCACCCTTTATTGGTTTGTATGTTTTC
118439 ATCCCAGTTA
Statistics
Matches: 81, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
66 81 1.00
ACGTcount: A:0.15, C:0.24, G:0.16, T:0.46
Consensus pattern (66 bp):
CCCTTGTCACCCTTTATTGGTTTGTATGTTTTCGCCCTAGCCAACTCCTATTCAACTTAAATTCC
A
Found at i:118674 original size:17 final size:17
Alignment explanation
Indices: 118633--118680 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
118623 ATTCTTGTCT
* *
118633 TAAATAAATATTTA-CT
1 TAAATAAATATATATCA
118649 TAAATTAAATATATATCA
1 TAAA-TAAATATATATCA
118667 TAAATAAATA-ATAT
1 TAAATAAATATATAT
118681 AAAAAATTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 8 0.29
17 15 0.54
18 5 0.18
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (17 bp):
TAAATAAATATATATCA
Found at i:119322 original size:22 final size:20
Alignment explanation
Indices: 119292--119335 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
119282 AATTCAAAAT
119292 TTTCACAATTTGTATCGATACA
1 TTTCACAA--TGTATCGATACA
* *
119314 TTTCTCAATGTATCTATACA
1 TTTCACAATGTATCGATACA
119334 TT
1 TT
119336 CAGTCATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 13 0.65
22 7 0.35
ACGTcount: A:0.30, C:0.18, G:0.07, T:0.45
Consensus pattern (20 bp):
TTTCACAATGTATCGATACA
Found at i:121675 original size:51 final size:50
Alignment explanation
Indices: 121619--121784 Score: 165
Period size: 51 Copynumber: 3.3 Consensus size: 50
121609 TATTTTTGAA
* *
121619 GGGATACTCCAACCCTAGCTTTATTTCTAAAACATTAATTTTTCACAATT
1 GGGATACTCCAACCCTAGCTTTATTTCTAAAACATCAATTTTGCACAATT
* *
121669 GAGGATACTCCAAACCC-AGTTTTATTT-TCAAAACACCAATTTTGCACAATT
1 G-GGATACTCC-AACCCTAGCTTTATTTCT-AAAACATCAATTTTGCACAATT
* * * * * ** *
121720 GGGGTACTCCAATCTTGGCTTTATTTCTAAAACATCGATTTACCACAATCG
1 GGGATACTCCAACCCTAGCTTTATTTCTAAAACATCAATTTTGCACAAT-T
*
121771 GGGATACTCTAACC
1 GGGATACTCCAACC
121785 TTGTTATTTT
Statistics
Matches: 93, Mismatches: 17, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
49 3 0.03
50 35 0.38
51 50 0.54
52 5 0.05
ACGTcount: A:0.31, C:0.23, G:0.12, T:0.33
Consensus pattern (50 bp):
GGGATACTCCAACCCTAGCTTTATTTCTAAAACATCAATTTTGCACAATT
Found at i:121767 original size:50 final size:50
Alignment explanation
Indices: 121623--121779 Score: 147
Period size: 50 Copynumber: 3.1 Consensus size: 50
121613 TTTGAAGGGA
* * *
121623 TACTCC-AACCCTAGCTTTATTTCTAAAACATTAATTTTTCACAATTGAGGA
1 TACTCCAAACCC-AGCTTTATTTCTAAAACATCAATTTTCCACAATTG-GGG
* * *
121674 TACTCCAAACCCAGTTTTATTT-TCAAAACACCAATTTTGCACAATTGGGG
1 TACTCCAAACCCAGCTTTATTTCT-AAAACATCAATTTTCCACAATTGGGG
* *** * * *
121724 TACTCCAATCTTGGCTTTATTTCTAAAACATCGATTTACCACAATCGGGG
1 TACTCCAAACCCAGCTTTATTTCTAAAACATCAATTTTCCACAATTGGGG
121774 ATACTC
1 -TACTC
121780 TAACCTTGTT
Statistics
Matches: 87, Mismatches: 15, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
50 41 0.47
51 41 0.47
52 5 0.06
ACGTcount: A:0.31, C:0.24, G:0.11, T:0.34
Consensus pattern (50 bp):
TACTCCAAACCCAGCTTTATTTCTAAAACATCAATTTTCCACAATTGGGG
Found at i:121862 original size:79 final size:79
Alignment explanation
Indices: 121739--121968 Score: 232
Period size: 79 Copynumber: 2.9 Consensus size: 79
121729 CAATCTTGGC
* * * * * ***
121739 TTTATTTCTAAAAC-ATCGATTTACCACAATCGGGGATACTCTAACCTTGTTATTTTCAAAGGGA
1 TTTATTTCAAAAACAAT-AATTTTCCACCATCGGGGATACCCTAACCCCATTATTTTCAAAGGGA
*
121803 TACTCCAACCCTGAT
65 TACTCCAACCCCGAT
* * * *
121818 TTTATTTCAAAAATAATAATTTTCCACCATCGCGGATACCCTAACCCCATTATTTTCGAGGGGAT
1 TTTATTTCAAAAACAATAATTTTCCACCATCGGGGATACCCTAACCCCATTATTTTCAAAGGGAT
*
121883 ACTCCAACCCCGGT
66 ACTCCAACCCCGAT
* * * * **
121897 TTTATTTCCAAAACATTGATTTTCCACCATCGGGGATACTCC-AACCCCGTTA-TTTCTGAGGAG
1 TTTATTTCAAAAACAATAATTTTCCACCATCGGGGATAC-CCTAACCCCATTATTTTCAAAGG-G
121960 ATACTCCAA
64 ATACTCCAA
121969 TCTCATTTTT
Statistics
Matches: 125, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
78 6 0.05
79 115 0.92
80 4 0.03
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.32
Consensus pattern (79 bp):
TTTATTTCAAAAACAATAATTTTCCACCATCGGGGATACCCTAACCCCATTATTTTCAAAGGGAT
ACTCCAACCCCGAT
Found at i:124313 original size:13 final size:13
Alignment explanation
Indices: 124295--124320 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
124285 TACACAAAGT
124295 ATGTATCGATACA
1 ATGTATCGATACA
124308 ATGTATCGATACA
1 ATGTATCGATACA
124321 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:124318 original size:32 final size:33
Alignment explanation
Indices: 124277--124340 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
124267 TAGCCAAACT
**
124277 TGTATCGATACACAAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
124309 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
124341 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.59
33 12 0.41
ACGTcount: A:0.42, C:0.16, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:124843 original size:34 final size:35
Alignment explanation
Indices: 124780--124846 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
124770 CTAAGTGATT
124780 GAGAGGTTCTATCTTAGCCTTTGAAAAAGATAGAGA
1 GAGAGGTTCTATCTTAGCCTTTG-AAAAGATAGAGA
124816 GAGAGGTTTCTATCTTAGCC-TTG-AAAGATAG
1 GAGAGG-TTCTATCTTAGCCTTTGAAAAGATAG
124847 TGTTGTAAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 8 0.27
36 9 0.30
37 13 0.43
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (35 bp):
GAGAGGTTCTATCTTAGCCTTTGAAAAGATAGAGA
Found at i:128848 original size:34 final size:34
Alignment explanation
Indices: 128810--128881 Score: 144
Period size: 34 Copynumber: 2.1 Consensus size: 34
128800 GGGGGAGAGA
128810 TTATTGGTATAAATTTGGTTTTATCAAACTTAGC
1 TTATTGGTATAAATTTGGTTTTATCAAACTTAGC
128844 TTATTGGTATAAATTTGGTTTTATCAAACTTAGC
1 TTATTGGTATAAATTTGGTTTTATCAAACTTAGC
128878 TTAT
1 TTAT
128882 AACAAAAAGG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.29, C:0.08, G:0.14, T:0.49
Consensus pattern (34 bp):
TTATTGGTATAAATTTGGTTTTATCAAACTTAGC
Found at i:130067 original size:13 final size:13
Alignment explanation
Indices: 130049--130074 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
130039 TACACAAAGT
130049 ATGTATCGATACA
1 ATGTATCGATACA
130062 ATGTATCGATACA
1 ATGTATCGATACA
130075 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:130597 original size:34 final size:35
Alignment explanation
Indices: 130534--130600 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
130524 CTAAGTGATT
130534 GAGAGGTTCTATCTTAGCCTTTGAAAAAGATAGAGA
1 GAGAGGTTCTATCTTAGCCTTTG-AAAAGATAGAGA
130570 GAGAGGTTTCTATCTTAGCC-TTG-AAAGATAG
1 GAGAGG-TTCTATCTTAGCCTTTGAAAAGATAG
130601 TGTTGTAAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 8 0.27
36 9 0.30
37 13 0.43
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (35 bp):
GAGAGGTTCTATCTTAGCCTTTGAAAAGATAGAGA
Found at i:133717 original size:32 final size:31
Alignment explanation
Indices: 133666--133725 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 31
133656 GGGTAAAAGC
* *
133666 AAAAAAATGAGAAACACAAGAGAAACAAAAATG
1 AAAAAAATGAAAAAAACAAG-GAAA-AAAAATG
133699 AAAAAAAT-AAAAAAACAAGGAAAAAAA
1 AAAAAAATGAAAAAAACAAGGAAAAAAA
133726 CAAAAAGAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 4 0.16
31 4 0.16
32 9 0.36
33 8 0.32
ACGTcount: A:0.77, C:0.07, G:0.12, T:0.05
Consensus pattern (31 bp):
AAAAAAATGAAAAAAACAAGGAAAAAAAATG
Found at i:135110 original size:62 final size:62
Alignment explanation
Indices: 135023--136791 Score: 2288
Period size: 61 Copynumber: 28.9 Consensus size: 62
135013 GGACGCTTTT
* * * * *
135023 TTTTTCTTTTTAAAGCTCACATGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGTAGGACGCC
1 TTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCC
* *
135085 TTTTTCTTTTCAAAGTCCACATGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCC
1 TTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCC
* * * * *
135147 TTTTTCTTTCCAAAGCCCATACGAGTTGGTGGCACCCATTAGTCCTCAAAGAGCATGACGCC
1 TTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCC
* * * * **
135209 TTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTTAAAGAACAAGACACC
1 TTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCC
* * * * ** * * *
135271 TTTTCCTTTTTAGAGCCCACATGAGTTGGTGGCACCCTTTAGTTTTCAAAGAGTATGATGCA
1 TTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCC
135333 TTTTTCTTTT-AAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCC
1 TTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCC
** * * *
135394 TTTTT-TTTTC-AAGCCCACGTGAATTGGTGGCACCCTTTAGTCCTTAAAGAGCAGGA-GACG
1 TTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATG-CC
* * * *
135454 TTTTTCTTTTC-CAGCCCACACGAATTGGTGGCACCCTTTAGTCTTCAAAGAGCAGGAGGCC
1 TTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCC
*
135515 TTTTTCTTTTCAAA-CCCACACGAGTTGGTGGCAACCTTTAGTCCTCAAAGAGCAGGA-GACC
1 TTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATG-CC
* * * *
135576 TTTTTCTTTTC-AAGCCCACACGAATTGGTGGCACCCTTTAGTCTTCAAAGAGCATGAGGCC
1 TTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCC
* *
135637 TTTTTCTTTTCAAA-CCCACACGAGTTGGTGGCAACCTTTAGTCCTCAAAGAGCAGGACGCC
1 TTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCC
* * * *
135698 TTTTTCTTTTC-AAGCCCATACGAGTTGGTGGCACCCTTGAGTCCTTAAAGAGTAGGATGCCC
1 TTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATG-CC
* * *
135760 TTTTT-TTTTC-AAGCCCACATGAGTTGGTGGCACCCTTGAGTCCTCAAAGAGTAGGATGCC
1 TTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCC
* *
135820 TTTTTCTTTTC-AAGCCCACACAAGTTGGTGGCATCCTTTAGTCCTC----A--A--A-GCC
1 TTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCC
* * * *
135872 TTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCCATTAGTCCTCAAAGAGCAAGATGCC
1 TTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCC
* * * * * * **
135934 TTTTTCATTTCAAAGCCCAAACAAGTTAGTGGCA-CCTCTTAGTCCTCAAAGTGCATGAAACC
1 TTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCT-TTAGTCCTCAAAGAGCAGGATGCC
*
135996 TTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCA-CCTTCTAGTCCTCAAAGAGCAGGACGCC
1 TTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTT-TAGTCCTCAAAGAGCAGGATGCC
* * *
136058 TTTGTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCATGACGCC
1 TTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCC
* *
136120 TTTTTCTTTTCAAAGCCCAGACGAGTTGGTGGCACCCTTTAGTCATCAAAGAGCAGGATGCC
1 TTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCC
* * * * *
136182 TTTTTCGTTTT--AAGCCCATATGAGTTGGTGGCAACCTCTAGTCCTCAAAGAGTAGGATGCC
1 TTTTTC-TTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCC
* * *
136243 TTTTTCTTTTC-AGGCCCACACGAGTTGGTGGCAACCTTTAGTCCTTAAAGAGCAGGATGCC
1 TTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCC
* **
136304 TTTTTCTTTTCAAAGCCCACATGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGTT
1 TTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCC
* * *
136366 TTTTTCTTTTCAAAGCCCATATGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCC
1 TTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCC
* * *
136428 TTTTTCTTTTCAAAGCCCACATGAGTTGGTGGCACCCTTTAGTCCTCAAACAGCAGGAAGCC
1 TTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCC
* * *
136490 TTTTTC-TTTCCAAGCCCACACGAGTTGGTGGTAACCTTTAGTCCTCAAAGAGCAGGATGCC
1 TTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCC
* * * * *
136551 TTTTTCTTTT-AAAGCCAACACAAATTGGTGGCACCCTTTAGTCCTCAAAGATCAAGATGCC
1 TTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCC
* * *
136612 TTTTTCTTTTCAAAGCCCACACGAGTTGTTGGCACCCTGTAGTCCTCAAAGAGCAAGA-GCC
1 TTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCC
*
136673 TTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGA--CA
1 TTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCC
* * ** * * * *
136733 TTTTCTCCTTGCAAAGCCCACATAAGTTGGTAGCGCCTTTTAGTCCTCAAAGAACAGGA
1 TTTT-TCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGA
136792 CGTACTTTAT
Statistics
Matches: 1513, Mismatches: 163, Indels: 63
0.87 0.09 0.04
Matches are distributed among these distances:
52 13 0.01
53 34 0.02
55 1 0.00
57 2 0.00
59 2 0.00
60 73 0.05
61 711 0.47
62 669 0.44
63 8 0.01
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (62 bp):
TTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCC
Found at i:136912 original size:40 final size:40
Alignment explanation
Indices: 136817--137044 Score: 210
Period size: 40 Copynumber: 5.5 Consensus size: 40
136807 TCATTTCCCT
* * * *
136817 TTTGTCTTTAAAGAGTAGGACGCACTTTATTTCTTTT-TCCC
1 TTTGTCCTCAAAGAGCAGGATGCACTTTATTT-TTTTCT-CC
*
136858 TTTGTCCTCGAAGAGCAGGATGCACTTTATTTTTTTCTCC
1 TTTGTCCTCAAAGAGCAGGATGCACTTTATTTTTTTCTCC
136898 TTTGTCCTCAAAGAGCAGGATGCACTTTATTTTTTTCTCC
1 TTTGTCCTCAAAGAGCAGGATGCACTTTATTTTTTTCTCC
* ** * * *
136938 TTTGTCCTCAAAGA-CGATGACACACTTAATTTCTTTCTTTTTC
1 TTTGTCCTCAAAGAGC-AGGATGCACTTTA-TT-TTT-TTCTCC
* * *
136981 TTTGTCCTCAAAGAGTAGGACT-CATTTTATTTCCTTTTTTCC
1 TTTGTCCTCAAAGAGCAGGA-TGCACTTTATTT--TTTTCTCC
* *
137023 TTTATCCTCGAAGAGCAGGATG
1 TTTGTCCTCAAAGAGCAGGATG
137045 TACTCTTTTT
Statistics
Matches: 156, Mismatches: 21, Indels: 19
0.80 0.11 0.10
Matches are distributed among these distances:
39 1 0.01
40 68 0.44
41 32 0.21
42 27 0.17
43 28 0.18
ACGTcount: A:0.21, C:0.21, G:0.15, T:0.43
Consensus pattern (40 bp):
TTTGTCCTCAAAGAGCAGGATGCACTTTATTTTTTTCTCC
Found at i:137053 original size:75 final size:74
Alignment explanation
Indices: 136973--137150 Score: 216
Period size: 75 Copynumber: 2.4 Consensus size: 74
136963 TTAATTTCTT
* * * * *
136973 TCTTTTT-CTTTGTCCTCAAAGAG-TAGGACTCATTTTATTTCCTTTTTTCCTTTATCCTCGAAG
1 TCTTTTTCCTTTGTCCTCAAAGAGCAAGG-CCCATTTCA-TT-CTCTTTTCCTTTATCCGCGAAG
*
137036 AGCAGGATGTAC
63 AGCAGGACGTAC
* * *
137048 TCTTTTTTCCTTTGTCCTTAAGGAGCAAGGCCCATTTCATTCTCTTTTCTTTTATCCGCGAAGAG
1 TC-TTTTTCCTTTGTCCTCAAAGAGCAAGGCCCATTTCATTCTCTTTTCCTTTATCCGCGAAGAG
137113 CAGGACGTAC
65 CAGGACGTAC
*
137123 TCTTTTTCCTTTGTCATCAAAGAGCAAG
1 TCTTTTTCCTTTGTCCTCAAAGAGCAAG
137151 ATGCCTTTTC
Statistics
Matches: 88, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
74 23 0.26
75 34 0.39
76 7 0.08
77 21 0.24
78 3 0.03
ACGTcount: A:0.20, C:0.23, G:0.16, T:0.41
Consensus pattern (74 bp):
TCTTTTTCCTTTGTCCTCAAAGAGCAAGGCCCATTTCATTCTCTTTTCCTTTATCCGCGAAGAGC
AGGACGTAC
Found at i:137060 original size:35 final size:35
Alignment explanation
Indices: 137014--137153 Score: 104
Period size: 34 Copynumber: 3.9 Consensus size: 35
137004 ATTTTATTTC
137014 CTTTTTTCCTTTATCCTCGAAGAGCAGGATGTACT
1 CTTTTTTCCTTTATCCTCGAAGAGCAGGATGTACT
* * * *
137049 CTTTTTTCCTTTGTCCT-TAAGGAGCAAGGCCCATTTCATT
1 CTTTTTTCCTTTATCCTCGAA-GAGC-AGG---ATGT-ACT
* * * *
137089 CTCTTTTCTTTTATCCGCGAAGAGCAGGACGTACT
1 CTTTTTTCCTTTATCCTCGAAGAGCAGGATGTACT
* * * *
137124 C-TTTTTCCTTTGTCATCAAAGAGCAAGATG
1 CTTTTTTCCTTTATCCTCGAAGAGCAGGATG
137154 CCTTTTCCTT
Statistics
Matches: 78, Mismatches: 20, Indels: 15
0.69 0.18 0.13
Matches are distributed among these distances:
34 23 0.29
35 23 0.29
36 5 0.06
39 6 0.08
40 19 0.24
41 2 0.03
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.39
Consensus pattern (35 bp):
CTTTTTTCCTTTATCCTCGAAGAGCAGGATGTACT
Found at i:137766 original size:49 final size:50
Alignment explanation
Indices: 137691--137828 Score: 149
Period size: 49 Copynumber: 2.8 Consensus size: 50
137681 AAACTTTCAT
* * *
137691 AATTTATATCAATACATTCTTCATTGTAT-GAATACATTCTAGG-TTTTA-C
1 AATTTGTATCGATACATTATTCATTGTATCG-ATACATTCT-GGATTTTACC
*
137740 AATTTGTATCGATACATTATTTATTGTATCGATACATTCTGGATTTTACC
1 AATTTGTATCGATACATTATTCATTGTATCGATACATTCTGGATTTTACC
* ** *
137790 TAGATGTATCGATACATT-TCTCAATGTATCGATACATTC
1 AATTTGTATCGATACATTAT-TCATTGTATCGATACATTC
137829 AAGCGTTTTT
Statistics
Matches: 76, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
48 2 0.03
49 40 0.53
50 34 0.45
ACGTcount: A:0.30, C:0.15, G:0.11, T:0.43
Consensus pattern (50 bp):
AATTTGTATCGATACATTATTCATTGTATCGATACATTCTGGATTTTACC
Done.