genome.fa.s2754.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2754
Parameters: 2 7 7 80 10 50 1000
Length:  83988

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3560--3585	13	2.0	13	100	0	52	38	15	15	30	1.88
3538--3605	33	2.1	32	91	8	111	32	16	16	35	1.91
3674--3698	13	1.9	13	100	0	50	36	16	16	32	1.90
4307--4378	22	3.2	22	62	11	56	52	26	0	20	1.47
4308--4425	45	2.6	45	94	1	200	54	23	0	22	1.45
5936--5997	29	2.1	29	88	5	90	51	3	0	45	1.17
6925--6959	2	17.5	2	100	0	70	51	0	0	48	1.00
7624--7689	20	3.5	20	65	23	52	43	1	1	53	1.19
8012--8073	21	3.0	21	72	11	56	46	0	0	53	1.00
7976--8051	36	2.1	37	80	11	86	46	0	0	53	1.00
8042--8091	16	3.6	14	78	13	50	56	0	0	44	0.99
12328--12378	24	2.1	24	100	0	102	33	0	15	50	1.44
13594--13636	22	1.9	22	81	13	52	51	2	0	46	1.13
13628--13689	29	2.2	29	82	5	74	62	0	4	32	1.16
14048--14096	20	2.5	20	80	6	55	53	6	4	36	1.45
14283--14317	17	2.0	18	88	5	54	48	0	0	51	1.00
14547--14572	7	3.7	7	100	0	52	57	0	0	42	0.98
14581--14638	21	2.7	20	80	20	64	41	0	1	56	1.09
14591--14631	21	2.0	21	90	4	66	41	0	2	56	1.13
14589--14647	20	3.0	20	73	16	61	38	0	1	59	1.08
19310--19373	16	3.7	18	77	10	71	46	1	1	50	1.20
19306--19373	17	4.1	17	74	9	68	45	1	1	51	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19668--19703	2	18.0	2	100	0	72	50	0	0	50	1.00
20004--20046	22	1.9	22	81	13	52	51	4	0	44	1.22
20056--20097	13	2.9	14	76	16	50	59	2	2	35	1.23
20411--20445	18	1.9	18	94	0	61	60	0	0	40	0.97
20691--20723	2	16.5	2	100	0	66	48	0	0	51	1.00
21877--22219	173	2.0	173	96	1	634	40	14	26	18	1.88
22438--22480	21	2.0	21	90	0	68	51	2	0	46	1.13
22490--22548	15	3.9	15	76	10	57	37	0	5	57	1.21
22782--22809	2	14.0	2	100	0	56	50	0	0	50	1.00
23133--23169	19	2.0	19	89	5	58	64	0	2	32	1.07
23409--23524	42	2.7	42	72	11	110	52	0	0	45	1.12
23492--23542	12	4.1	12	75	14	50	50	1	0	47	1.12
23492--23542	25	2.0	25	88	7	77	50	1	0	47	1.12
23519--23559	20	2.0	20	85	9	55	46	2	0	51	1.14
23534--23573	14	2.9	14	85	3	55	50	0	0	50	1.00
23536--23629	31	3.0	30	79	17	86	52	0	0	47	1.00
23557--23611	28	1.9	29	85	3	76	54	0	0	45	0.99
23739--23829	36	2.5	36	77	20	91	52	0	1	46	1.07
23739--23829	35	2.5	36	76	20	91	52	0	1	46	1.07
24479--24514	2	18.0	2	88	11	56	50	2	0	47	1.15
24617--24715	50	2.0	50	80	11	114	47	2	0	50	1.12
24695--24752	18	3.1	18	72	7	53	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24751--24796	17	2.5	19	74	25	53	58	0	0	41	0.98
42670--42708	9	4.2	9	87	6	51	53	0	0	46	1.00
42852--42926	23	3.3	23	81	7	73	53	10	2	33	1.50
42910--42964	28	1.9	28	88	3	83	72	5	0	21	1.04
43587--43631	20	2.2	20	80	0	54	40	0	0	60	0.97
43596--43657	17	3.6	17	71	14	56	46	0	0	53	1.00
43609--43681	18	4.1	18	73	18	64	46	0	0	53	1.00
43592--43642	27	1.9	26	84	11	68	43	0	0	56	0.99
45715--45752	3	12.7	3	100	0	76	31	0	0	68	0.90
48641--48822	90	2.0	90	98	0	355	29	16	12	41	1.85
49595--49702	24	4.4	23	75	13	90	10	29	25	35	1.89
51975--52017	23	1.9	22	85	4	59	46	4	48	0	1.22
52176--52227	17	3.1	17	80	8	61	42	0	1	55	1.10
52183--52228	20	2.3	20	88	7	67	45	0	0	54	0.99
52310--52355	20	2.2	21	84	3	58	52	0	0	47	1.00
55074--55125	20	2.7	20	85	8	63	55	0	1	42	1.10
57080--57178	50	2.0	50	87	0	144	19	4	33	43	1.69
58195--58248	20	2.5	22	77	16	60	40	7	5	46	1.55
58996--59038	23	2.0	22	86	9	61	60	0	4	34	1.17
59120--59170	23	2.3	22	80	12	59	39	1	0	58	1.09
60529--60585	13	3.6	15	77	22	55	31	1	0	66	1.02
60551--60586	13	2.6	14	91	8	56	27	0	0	72	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63443--63469	14	1.9	14	100	0	54	55	7	0	37	1.28
63598--63623	6	4.3	6	100	0	52	69	0	0	30	0.89
64035--64070	2	19.5	2	83	16	51	55	0	0	44	0.99
73613--73647	2	17.5	2	87	0	52	0	5	48	45	1.26
74714--74757	22	2.0	21	87	12	63	31	4	22	40	1.74
79899--79946	23	2.1	23	84	0	60	45	2	4	47	1.33
80237--80273	18	2.1	18	89	0	56	37	13	5	43	1.67

Tables:   1

The End!