genome.fa.s2756.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2756
Parameters: 2 7 7 80 10 50 1000
Length:  89000

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
819--855	16	2.2	17	90	4	58	70	10	5	13	1.32
6388--6457	27	2.6	27	75	18	74	51	2	1	44	1.25
6584--6608	2	12.5	2	100	0	50	48	0	0	52	1.00
6777--6806	2	15.0	2	100	0	60	50	0	0	50	1.00
11244--11281	19	2.0	20	89	5	60	47	0	0	52	1.00
11461--11557	24	4.0	24	70	14	74	55	0	0	44	0.99
16568--16602	17	2.1	17	89	5	54	54	0	0	45	0.99
16753--16816	15	4.1	17	69	15	57	42	0	0	57	0.98
16798--16862	21	3.1	21	82	12	73	49	0	0	50	1.00
17327--17389	9	6.3	10	74	18	51	65	0	0	34	0.93
17302--17418	42	2.8	42	76	17	118	57	0	1	41	1.09
17326--17375	18	2.8	17	87	9	64	62	0	0	38	0.96
17307--17368	5	12.8	5	77	16	51	59	0	0	40	0.97
17302--17384	19	4.2	20	75	14	57	59	0	1	39	1.05
17365--17427	18	3.6	18	69	16	51	53	0	1	44	1.10
17345--17419	18	3.7	19	71	20	55	56	0	1	42	1.08
17345--17469	63	2.0	60	83	9	153	54	0	4	40	1.25
18852--18893	2	21.0	2	100	0	84	50	0	0	50	1.00
19922--19953	15	2.1	15	100	0	64	25	34	21	18	1.96
26249--26307	29	2.1	28	83	3	73	59	5	11	23	1.52
26527--26568	21	2.0	21	85	4	57	57	9	2	30	1.44
26611--26703	21	4.4	21	70	5	71	50	9	2	37	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26690--26734	21	2.1	21	84	8	56	57	11	6	24	1.57
26745--26785	11	3.8	11	75	18	50	56	2	0	41	1.13
26726--26796	21	3.5	20	81	7	81	57	4	1	36	1.27
38580--38626	22	2.1	22	88	7	69	14	2	29	53	1.53
38603--38751	34	4.4	34	81	5	176	24	4	27	44	1.71
38602--38751	68	2.2	68	92	2	248	24	4	27	44	1.71
39052--39112	19	3.3	18	82	8	86	27	16	18	37	1.92
43191--43237	22	2.1	22	92	0	76	14	8	27	48	1.73
43214--43362	34	4.4	34	85	0	199	22	6	28	42	1.79
43213--43362	68	2.2	68	93	0	255	22	6	28	42	1.78
44168--44201	17	2.0	17	88	0	50	41	0	0	58	0.98
44492--44533	18	2.3	18	95	0	75	38	4	9	47	1.57
51764--51810	19	2.5	19	80	10	53	55	0	4	40	1.19
52551--52579	2	14.5	2	100	0	58	0	48	0	51	1.00
52579--52625	2	24.0	2	82	4	60	42	0	6	51	1.27
53663--53710	12	4.0	12	81	8	53	47	0	4	47	1.21
53663--53710	24	2.0	24	84	8	62	47	0	4	47	1.21
53735--53774	22	1.9	20	85	10	53	57	0	0	42	0.98
54495--54525	3	10.7	3	93	6	55	35	0	0	64	0.94
54442--54541	53	1.9	51	80	13	116	44	1	0	55	1.06
55860--55912	28	1.9	28	88	3	81	49	3	1	45	1.31
55897--55947	5	10.2	5	76	16	52	31	1	3	62	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62820--62878	22	2.7	22	78	7	66	35	0	1	62	1.05
63120--63174	22	2.5	23	77	17	62	52	0	0	47	1.00
63104--63168	27	2.4	27	82	5	78	52	0	0	47	1.00
64921--64952	6	5.3	6	100	0	64	15	68	0	15	1.21
65070--65099	2	15.0	2	100	0	60	50	0	0	50	1.00
65112--65139	9	3.1	9	100	0	56	57	0	10	32	1.33
67975--68460	253	1.9	253	89	3	755	23	18	20	37	1.94
70929--70988	25	2.4	25	97	0	111	40	8	8	43	1.65
78163--78198	18	1.9	19	94	5	65	2	8	0	88	0.59
80033--80061	2	15.0	2	92	7	51	51	0	0	48	1.00
80061--80090	2	15.0	2	100	0	60	0	0	50	50	1.00
80505--80543	20	2.0	20	85	10	53	48	0	0	51	1.00
80564--80653	5	18.0	5	75	15	71	37	2	0	60	1.09
80496--80634	52	2.7	49	72	15	122	40	1	0	58	1.07
80564--80653	28	3.2	29	76	20	75	37	2	0	60	1.09
80569--80674	31	3.2	33	82	12	112	36	3	0	59	1.16
80598--80656	18	3.6	17	86	9	79	33	0	0	66	0.92
80582--80673	23	4.1	22	78	9	89	35	4	0	59	1.17
81325--81369	2	22.5	2	86	0	63	51	0	4	44	1.21
83932--83980	13	3.6	14	76	13	50	59	0	0	40	0.98
84487--84802	159	2.0	157	97	1	596	28	17	15	38	1.90
85456--85488	17	1.9	17	88	11	50	69	18	9	3	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85905--85990	37	2.3	38	93	2	147	34	8	0	56	1.29
86534--86586	20	2.7	20	80	8	56	60	5	0	33	1.20
86830--86907	42	1.9	41	82	10	97	55	1	1	42	1.16
87366--87402	2	20.0	2	84	15	53	51	0	0	48	1.00
87873--87911	19	2.0	19	85	5	51	56	0	0	43	0.99
87890--87955	25	2.6	26	77	18	68	53	1	1	43	1.19

Tables:   1

The End!