Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold276
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 761718
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.34
File 2 of 6
Found at i:187938 original size:2 final size:2
Alignment explanation
Indices: 187931--187967 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
187921 TTTCTTAAAA
187931 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
187968 TTTTACATGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:188660 original size:14 final size:14
Alignment explanation
Indices: 188643--188672 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
188633 AGATAACATA
*
188643 TGATTAATAAGTAT
1 TGATTAACAAGTAT
188657 TGATTAACAAGTAT
1 TGATTAACAAGTAT
188671 TG
1 TG
188673 TGAATGTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.03, G:0.17, T:0.40
Consensus pattern (14 bp):
TGATTAACAAGTAT
Found at i:191825 original size:15 final size:14
Alignment explanation
Indices: 191786--191829 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
191776 ATTTTAACAC
191786 TATAAAAATTAAAA
1 TATAAAAATTAAAA
* **
191800 TGTTGAAATTAATAA
1 TATAAAAATTAA-AA
191815 TATAAAAATTAAAA
1 TATAAAAATTAAAA
191829 T
1 T
191830 GCTTTTTTCT
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
14 12 0.52
15 11 0.48
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (14 bp):
TATAAAAATTAAAA
Found at i:192620 original size:33 final size:33
Alignment explanation
Indices: 192578--192645 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
192568 TAATAATATT
192578 AATACCATACTTGAATTCTCTCAAACTTGATCC
1 AATACCATACTTGAATTCTCTCAAACTTGATCC
*
192611 AATACCATACTTGAATTCTCTCCAACTTGATCC
1 AATACCATACTTGAATTCTCTCAAACTTGATCC
192644 AA
1 AA
192646 CTCACACTTC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.34, C:0.28, G:0.06, T:0.32
Consensus pattern (33 bp):
AATACCATACTTGAATTCTCTCAAACTTGATCC
Found at i:193420 original size:2 final size:2
Alignment explanation
Indices: 193413--193446 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
193403 AGCAACAAAA
193413 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
193447 TCAACTATTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:196076 original size:27 final size:26
Alignment explanation
Indices: 196046--196107 Score: 74
Period size: 24 Copynumber: 2.4 Consensus size: 26
196036 AATATGGTGA
196046 TTATTTTTATTCGTAAAAAATGGTGGC
1 TTATTTTTATT-GTAAAAAATGGTGGC
* *
196073 TTA-TTTT-TTGTCAAAACTGGTGGC
1 TTATTTTTATTGTAAAAAATGGTGGC
*
196097 TAATTTTTATT
1 TTATTTTTATT
196108 AGAAAATGGG
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
24 15 0.50
25 6 0.20
26 6 0.20
27 3 0.10
ACGTcount: A:0.26, C:0.08, G:0.16, T:0.50
Consensus pattern (26 bp):
TTATTTTTATTGTAAAAAATGGTGGC
Found at i:198650 original size:21 final size:22
Alignment explanation
Indices: 198621--198666 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
198611 TGTTCAGACA
** *
198621 AGTAGTACTCCGCAGCAGGTGG
1 AGTAGTACTCCAAAACAGGTGG
198643 AGTA-TACTCCAAAACAGGTGG
1 AGTAGTACTCCAAAACAGGTGG
198664 AGT
1 AGT
198667 TTCAATAGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.30, C:0.20, G:0.30, T:0.20
Consensus pattern (22 bp):
AGTAGTACTCCAAAACAGGTGG
Found at i:200637 original size:24 final size:24
Alignment explanation
Indices: 200578--200646 Score: 75
Period size: 24 Copynumber: 2.8 Consensus size: 24
200568 AGCATTAGTA
* * *
200578 TTTGTCAAATATGGTGGTTATTTTTG
1 TTTGTCAAAAATGGTGG--CTTGTTG
*
200604 TTTGTAAAAAATGGTGGCTTGTTG
1 TTTGTCAAAAATGGTGGCTTGTTG
*
200628 TTTGTCAAAATTGGTGGCT
1 TTTGTCAAAAATGGTGGCT
200647 AATTTTTATT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
24 22 0.59
26 15 0.41
ACGTcount: A:0.22, C:0.06, G:0.26, T:0.46
Consensus pattern (24 bp):
TTTGTCAAAAATGGTGGCTTGTTG
Found at i:202424 original size:21 final size:19
Alignment explanation
Indices: 202386--202424 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
202376 GCAAAATCTT
202386 AAAATTCTAAATTAATTAC
1 AAAATTCTAAATTAATTAC
*
202405 AAAATTACTAGAATTTATTA
1 AAAATT-CTA-AATTAATTA
202425 AAGAGAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 3 0.18
21 8 0.47
ACGTcount: A:0.51, C:0.08, G:0.03, T:0.38
Consensus pattern (19 bp):
AAAATTCTAAATTAATTAC
Found at i:203237 original size:75 final size:75
Alignment explanation
Indices: 203149--203301 Score: 288
Period size: 75 Copynumber: 2.0 Consensus size: 75
203139 GATTTTTATT
*
203149 TTTCATAACAAGAATAGGTATTGTTATGCACCACTAACTTGTGGTCTTGATAAAGTATTGTTTTT
1 TTTCATAACAAGAATAGGTATTGTTATGCACCACTAACTTGTGGTCTTAATAAAGTATTGTTTTT
203214 TCATTTTGAA
66 TCATTTTGAA
*
203224 TTTCATAATAAGAATAGGTATTGTTATGCACCACTAACTTGTGGTCTTAATAAAGTATTGTTTTT
1 TTTCATAACAAGAATAGGTATTGTTATGCACCACTAACTTGTGGTCTTAATAAAGTATTGTTTTT
203289 TCATTTTGAA
66 TCATTTTGAA
203299 TTT
1 TTT
203302 GTTATGAGTC
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
75 76 1.00
ACGTcount: A:0.29, C:0.11, G:0.15, T:0.44
Consensus pattern (75 bp):
TTTCATAACAAGAATAGGTATTGTTATGCACCACTAACTTGTGGTCTTAATAAAGTATTGTTTTT
TCATTTTGAA
Found at i:204489 original size:37 final size:37
Alignment explanation
Indices: 204448--204526 Score: 124
Period size: 37 Copynumber: 2.2 Consensus size: 37
204438 AACATGAAAC
* *
204448 CTTTTAGTGTTACGAATGTCAAACTAAGAGTCAAAAG
1 CTTTTAGTGTTACGAATGTCAAACTAAAAGTAAAAAG
*
204485 CTTTTGGTGTTACGAATGTCAAACTAAAAGTAAAAAG
1 CTTTTAGTGTTACGAATGTCAAACTAAAAGTAAAAAG
204522 -TTTTA
1 CTTTTA
204527 CAACATCCAA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
36 4 0.11
37 34 0.89
ACGTcount: A:0.38, C:0.11, G:0.18, T:0.33
Consensus pattern (37 bp):
CTTTTAGTGTTACGAATGTCAAACTAAAAGTAAAAAG
Found at i:211858 original size:25 final size:25
Alignment explanation
Indices: 211824--211873 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
211814 CATTAAAGCT
211824 CATTATGTGTGTTGTGTACGAATGC
1 CATTATGTGTGTTGTGTACGAATGC
211849 CATTATGTGTGTTGTGTACGAATGC
1 CATTATGTGTGTTGTGTACGAATGC
211874 AGTGATTGCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.20, C:0.12, G:0.28, T:0.40
Consensus pattern (25 bp):
CATTATGTGTGTTGTGTACGAATGC
Found at i:212014 original size:30 final size:30
Alignment explanation
Indices: 211975--212035 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
211965 AGCTATGTTG
* *
211975 ATGAGAGATTACTATTGGGTTAGCATGTAA
1 ATGAAAGATTACTATTAGGTTAGCATGTAA
*
212005 ATGAAAGATTACTATTAGGTTGGCATGTAA
1 ATGAAAGATTACTATTAGGTTAGCATGTAA
212035 A
1 A
212036 GGATGCATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.36, C:0.07, G:0.25, T:0.33
Consensus pattern (30 bp):
ATGAAAGATTACTATTAGGTTAGCATGTAA
Found at i:216694 original size:13 final size:13
Alignment explanation
Indices: 216676--216705 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
216666 ATACATTATG
216676 CATTGTATCGATA
1 CATTGTATCGATA
216689 CATTGTATCGATA
1 CATTGTATCGATA
216702 CATT
1 CATT
216706 CTGTGTTTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:219230 original size:51 final size:51
Alignment explanation
Indices: 219164--219280 Score: 180
Period size: 51 Copynumber: 2.3 Consensus size: 51
219154 TTATTTTCGA
** **
219164 GGGGATACTCCAACCTCGATTTTATTTTTAAAACATCAATTTTTTGTAATC
1 GGGGATACTCCAACCTCGATTTTATTTCCAAAACATCAATTTTTCATAATC
* *
219215 GGGGATACTCTAACCTCGGTTTTATTTCCAAAACATCAATTTTTCATAATC
1 GGGGATACTCCAACCTCGATTTTATTTCCAAAACATCAATTTTTCATAATC
219266 GGGGATACTCCAACC
1 GGGGATACTCCAACC
219281 CCGTTATTTC
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
51 59 1.00
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.36
Consensus pattern (51 bp):
GGGGATACTCCAACCTCGATTTTATTTCCAAAACATCAATTTTTCATAATC
Found at i:219299 original size:28 final size:28
Alignment explanation
Indices: 219263--219334 Score: 119
Period size: 28 Copynumber: 2.6 Consensus size: 28
219253 ATTTTTCATA
219263 ATCGGGGATACTCCAACCCCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTATTTC
219291 ATCGGGGATACTCCAACCCCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTATTTC
*
219319 -TGAGGGGATACTCCAA
1 AT-CGGGGATACTCCAA
219335 GCCTGACTTT
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
27 1 0.02
28 41 0.98
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTATTTC
Found at i:219426 original size:158 final size:157
Alignment explanation
Indices: 219133--219464 Score: 393
Period size: 158 Copynumber: 2.1 Consensus size: 157
219123 ATTTTTTACA
* * * *
219133 ATCGCGGATACTCCAATCCCGTTATTTTCGAGGGGATACTCCAACCTCGATTTTATTTTTAAAAC
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCTCGACTTTATTTTCAAAAC
* *** * * * ** * *
219198 ATCAATTTTTTGTAATCGGGGATACTCTAACCTCGGTTTTATTTCCAAAACATCAATTTTTCATA
66 ATCAATTTCTCACAATCAGGGATACTCCAACCCCGCCTATATTTCCAAAACATCAATTTTTCACA
219263 ATCGGGGATACTCCAACCCCGTTATTT
131 ATCGGGGATACTCCAACCCCGTTATTT
219290 CATCGGGGATACTCCAACCCCGTTA-TTTCTGAGGGGATACTCCAAGCCT-GACTTTATTTTCAA
1 -ATCGGGGATACTCCAACCCCGTTATTTTC-GAGGGGATACTCCAA-CCTCGACTTTATTTTCAA
* ** * * *
219353 AATATTGATTTCTCACAATCAGGGATACTCCAACCCCAGCCTATA-TTCTAAAGCATCGATTTTT
63 AACATCAATTTCTCACAATCAGGGATACTCCAACCCC-GCCTATATTTCCAAAACATCAATTTTT
219417 CACAATCGGGGATACTCCAACCCCGTTATTT
127 CACAATCGGGGATACTCCAACCCCGTTATTT
219448 -TCGAGGGGATACTCCAA
1 ATC--GGGGATACTCCAA
219465 TCCTGATTTT
Statistics
Matches: 148, Mismatches: 21, Indels: 10
0.83 0.12 0.06
Matches are distributed among these distances:
156 2 0.01
157 4 0.03
158 135 0.91
159 7 0.05
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.33
Consensus pattern (157 bp):
ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCTCGACTTTATTTTCAAAAC
ATCAATTTCTCACAATCAGGGATACTCCAACCCCGCCTATATTTCCAAAACATCAATTTTTCACA
ATCGGGGATACTCCAACCCCGTTATTT
Found at i:219573 original size:79 final size:79
Alignment explanation
Indices: 219411--219590 Score: 209
Period size: 79 Copynumber: 2.3 Consensus size: 79
219401 TAAAGCATCG
* * * * * * * *
219411 ATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAATCCTGATTTTA
1 ATTTTCCATAATCGGGGATACTCCAACCCCATTATTTCCAAAGGGATACTCAAACCCTGATTTTA
* *
219476 TTTTCAAAATACCG
66 TTTTCAAAACACCA
* * *
219490 ATTTTCTATAATCAGGGATACTCCAACCCTATTATTTCCAAAGGGATACTCAAACCCTGATTTTA
1 ATTTTCCATAATCGGGGATACTCCAACCCCATTATTTCCAAAGGGATACTCAAACCCTGATTTTA
* *
219555 -TTTCTATAACACTA
66 TTTTC-AAAACACCA
219569 ATTTTCCATAATCGGGGATACT
1 ATTTTCCATAATCGGGGATACT
219591 ATAGCCCCGT
Statistics
Matches: 83, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
78 4 0.05
79 79 0.95
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.35
Consensus pattern (79 bp):
ATTTTCCATAATCGGGGATACTCCAACCCCATTATTTCCAAAGGGATACTCAAACCCTGATTTTA
TTTTCAAAACACCA
Found at i:233487 original size:2 final size:2
Alignment explanation
Indices: 233480--233511 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
233470 TAGCATCCAC
233480 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
233512 TATGAGTAGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:235309 original size:163 final size:163
Alignment explanation
Indices: 235118--235443 Score: 625
Period size: 163 Copynumber: 2.0 Consensus size: 163
235108 CATCTGTGAG
235118 ATATAATTTGTGTTTATAATATTTATTATTCTTGAGTATTTATCTTTTCTTCTATGCTTCATAAT
1 ATATAATTTGTGTTTATAATATTTATTATTCTTGAGTATTTATCTTTTCTTCTATGCTTCATAAT
*
235183 TATGATTATCATGTTGGTTTAATATTTGATACCGCATTTGATTAATAGGATAATCTATAGTTATT
66 TATGATTATCATGTTGGTTTAATATTTGATACCGCATTTAATTAATAGGATAATCTATAGTTATT
235248 TAGAAAATCAAATCTGTAATTGTTTGATTGTTC
131 TAGAAAATCAAATCTGTAATTGTTTGATTGTTC
235281 ATATAATTTGTGTTTATAATATTTATTATTCTTGAGTATTTATCTTTTCTTCTATGCTTCATAAT
1 ATATAATTTGTGTTTATAATATTTATTATTCTTGAGTATTTATCTTTTCTTCTATGCTTCATAAT
* *
235346 TATGATTATCATGTTGGTTTAATGTTTGATACCGCATTTAATTGATAGGATAATCTATAGTTATT
66 TATGATTATCATGTTGGTTTAATATTTGATACCGCATTTAATTAATAGGATAATCTATAGTTATT
235411 TAGAAAATCAAATCTGTAATTGTTTGATTGTTC
131 TAGAAAATCAAATCTGTAATTGTTTGATTGTTC
235444 TAATAAAAGT
Statistics
Matches: 160, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
163 160 1.00
ACGTcount: A:0.29, C:0.09, G:0.13, T:0.50
Consensus pattern (163 bp):
ATATAATTTGTGTTTATAATATTTATTATTCTTGAGTATTTATCTTTTCTTCTATGCTTCATAAT
TATGATTATCATGTTGGTTTAATATTTGATACCGCATTTAATTAATAGGATAATCTATAGTTATT
TAGAAAATCAAATCTGTAATTGTTTGATTGTTC
Found at i:236841 original size:6 final size:6
Alignment explanation
Indices: 236830--236856 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
236820 AACCGAGGGA
236830 ATATGG ATATGG ATATGG ATATGG ATA
1 ATATGG ATATGG ATATGG ATATGG ATA
236857 GATATGTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.37, C:0.00, G:0.30, T:0.33
Consensus pattern (6 bp):
ATATGG
Found at i:239698 original size:23 final size:23
Alignment explanation
Indices: 239672--239718 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
239662 TTATATATTA
*
239672 TAAAATAATAAT-TAATCAAAAAG
1 TAAAATAAT-ATCTAATAAAAAAG
*
239695 TAAAATTATATCTAATAAAAAAG
1 TAAAATAATATCTAATAAAAAAG
239718 T
1 T
239719 GAATTATACC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 2 0.10
23 19 0.90
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.30
Consensus pattern (23 bp):
TAAAATAATATCTAATAAAAAAG
Found at i:239723 original size:22 final size:23
Alignment explanation
Indices: 239684--239726 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
239674 AAATAATAAT
*
239684 TAATCAAAAAGTAAAATTATATC
1 TAATAAAAAAGTAAAATTATATC
*
239707 TAATAAAAAAGT-GAATTATA
1 TAATAAAAAAGTAAAATTATA
239727 CCATAAGCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.58, C:0.05, G:0.07, T:0.30
Consensus pattern (23 bp):
TAATAAAAAAGTAAAATTATATC
Found at i:239826 original size:2 final size:2
Alignment explanation
Indices: 239819--239849 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
239809 ATTGAGAGTT
239819 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
239850 TAATAGTAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:240547 original size:18 final size:18
Alignment explanation
Indices: 240520--240561 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
240510 AATTATTTAA
* *
240520 AAAT-TAATTTTATATAT
1 AAATATAATTTAATAAAT
240537 AAATATAATTTAATAAAT
1 AAATATAATTTAATAAAT
240555 AAATATA
1 AAATATA
240562 TTAAAAATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 4 0.18
18 18 0.82
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
AAATATAATTTAATAAAT
Found at i:240594 original size:25 final size:25
Alignment explanation
Indices: 240560--240611 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
240550 TAAATAAATA
240560 TATTAAAAATAAT-ATTATAACAATT
1 TATTAAAAATAATAATT-TAACAATT
* *
240585 TATTTAAAATAATAATTTAATAATT
1 TATTAAAAATAATAATTTAACAATT
240610 TA
1 TA
240612 CTTTTTAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 21 0.88
26 3 0.12
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (25 bp):
TATTAAAAATAATAATTTAACAATT
Found at i:241230 original size:14 final size:15
Alignment explanation
Indices: 241213--241244 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
241203 GAAAATTATG
241213 ATTAAAAAATAAA-A
1 ATTAAAAAATAAATA
241227 ATTAAAAAATAAATA
1 ATTAAAAAATAAATA
241242 ATT
1 ATT
241245 TTATAAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (15 bp):
ATTAAAAAATAAATA
Found at i:244918 original size:2 final size:2
Alignment explanation
Indices: 244913--244943 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
244903 ATTAAAAAAC
244913 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
244944 TACATTTTGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:245148 original size:19 final size:19
Alignment explanation
Indices: 245124--245162 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
245114 AAAATTAAAA
245124 TATATTGAAT-TTTTAAATT
1 TATATT-AATATTTTAAATT
*
245143 TATATTAATATTTTATATT
1 TATATTAATATTTTAAATT
245162 T
1 T
245163 TTATAATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 3 0.17
19 15 0.83
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.62
Consensus pattern (19 bp):
TATATTAATATTTTAAATT
Found at i:245461 original size:20 final size:21
Alignment explanation
Indices: 245431--245476 Score: 60
Period size: 20 Copynumber: 2.2 Consensus size: 21
245421 TGATATTTAA
*
245431 AAATATTTAAATAA-AAATATT
1 AAATATTTAAAAAATAAAT-TT
245452 AAAT-TTTAAAAAATAAATTT
1 AAATATTTAAAAAATAAATTT
245472 AAATA
1 AAATA
245477 AAATAAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
20 14 0.64
21 8 0.36
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (21 bp):
AAATATTTAAAAAATAAATTT
Found at i:245468 original size:14 final size:15
Alignment explanation
Indices: 245451--245483 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
245441 ATAAAAATAT
*
245451 TAAATTTTAA-AAAA
1 TAAATTTAAATAAAA
245465 TAAATTTAAATAAAA
1 TAAATTTAAATAAAA
245480 TAAA
1 TAAA
245484 AAATCTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
TAAATTTAAATAAAA
Found at i:246583 original size:2 final size:2
Alignment explanation
Indices: 246578--246604 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
246568 TCTTGAAGCA
246578 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
246605 ATTATAAAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:249692 original size:3 final size:3
Alignment explanation
Indices: 249684--249723 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
249674 TATTAACTAT
249684 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
249724 CAAAGGTTTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:250088 original size:21 final size:22
Alignment explanation
Indices: 250055--250096 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
250045 TTTAAGTGAG
250055 TTTTTATTAAAAA-AATATTTCA
1 TTTTTATTAAAAATAAT-TTTCA
*
250077 TTTTT-TTCAAAATAATTTTC
1 TTTTTATTAAAAATAATTTTC
250097 TTATAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (22 bp):
TTTTTATTAAAAATAATTTTCA
Found at i:250088 original size:22 final size:21
Alignment explanation
Indices: 250055--250096 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
250045 TTTAAGTGAG
250055 TTTTTATTAAAAAAATATTTCA
1 TTTTTATTAAAAAAAT-TTTCA
*
250077 TTTTT-TTCAAAATAATTTTC
1 TTTTTATT-AAAAAAATTTTC
250097 TTATAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (21 bp):
TTTTTATTAAAAAAATTTTCA
Found at i:250663 original size:7 final size:7
Alignment explanation
Indices: 250648--250690 Score: 50
Period size: 7 Copynumber: 5.9 Consensus size: 7
250638 ATTTATTTGT
*
250648 AAATATA
1 AAATTTA
250655 AAATTTA
1 AAATTTA
250662 AAATTATA
1 AAATT-TA
250670 AACATTTA
1 AA-ATTTA
*
250678 ATATTTA
1 AAATTTA
250685 AAATTT
1 AAATTT
250691 TTAAATATCA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
7 21 0.68
8 7 0.23
9 3 0.10
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (7 bp):
AAATTTA
Found at i:250669 original size:15 final size:15
Alignment explanation
Indices: 250651--250690 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
250641 TATTTGTAAA
250651 TATAAAATTTAAAAT
1 TATAAAATTTAAAAT
*
250666 TATAAACATTTAATAT
1 TATAAA-ATTTAAAAT
250682 T-TAAAATTT
1 TATAAAATTT
250691 TTAAATATCA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 4 0.17
15 10 0.43
16 9 0.39
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (15 bp):
TATAAAATTTAAAAT
Found at i:250897 original size:6 final size:7
Alignment explanation
Indices: 250872--250896 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
250862 GTAAAAATTA
250872 AAAAATC
1 AAAAATC
250879 AAAAATC
1 AAAAATC
250886 AAAAATC
1 AAAAATC
250893 AAAA
1 AAAA
250897 TTTTATACCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.76, C:0.12, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAATC
Found at i:251353 original size:21 final size:20
Alignment explanation
Indices: 251323--251363 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
251313 TTAAAAAAAT
251323 TATATTTAT-ATTAATATTTA
1 TATATTTATAATTAA-ATTTA
251343 TATATTTTATAATTAAATTTA
1 TATA-TTTATAATTAAATTTA
251364 AATAAAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.21
21 10 0.53
22 5 0.26
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (20 bp):
TATATTTATAATTAAATTTA
Found at i:255412 original size:59 final size:59
Alignment explanation
Indices: 255269--255486 Score: 218
Period size: 59 Copynumber: 3.8 Consensus size: 59
255259 AACATGATAG
*** * *
255269 GACGCCAAGTCACTCAGGTTTAGATCGCCA-TCAAGGCAACCCCAATC----CAGTAAGT
1 GACGCCAAGTCACTCAAAATTAGATCGCCACT-AAGGCGACCCCAATCTGGACACTAAGT
* * *
255324 GACGCC-TGTCATTCAAACTTAGATCGCCACTAAGGCGACCCCAATCTGGACACTAAGT
1 GACGCCAAGTCACTCAAAATTAGATCGCCACTAAGGCGACCCCAATCTGGACACTAAGT
* *
255382 GACGCCAAGTCACTCAAAATTAGATTGCCACCAAGGCGACCCCAAT-TCGGACACTAAGT
1 GACGCCAAGTCACTCAAAATTAGATCGCCACTAAGGCGACCCCAATCT-GGACACTAAGT
* * * * *
255441 GATGCCAAGTCACTC-AAATCCAGATCTCCACCAAGGCGACTCCAAT
1 GACGCCAAGTCACTCAAAAT-TAGATCGCCACTAAGGCGACCCCAAT
255487 TGAAATATTA
Statistics
Matches: 138, Mismatches: 17, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
54 32 0.23
55 7 0.05
58 18 0.13
59 81 0.59
ACGTcount: A:0.32, C:0.32, G:0.18, T:0.18
Consensus pattern (59 bp):
GACGCCAAGTCACTCAAAATTAGATCGCCACTAAGGCGACCCCAATCTGGACACTAAGT
Found at i:255503 original size:59 final size:59
Alignment explanation
Indices: 255344--255512 Score: 177
Period size: 59 Copynumber: 2.9 Consensus size: 59
255334 ATTCAAACTT
* * * * *
255344 AGATCGCCACTAAGGCGACCCCAA-TCTGGACACTAAGTGACGCCAAGTCACTCAAAATT
1 AGATTGCCACCAAGGCGACCCCAATTC-GAACACTAAGTGATGCCAAGTCACTCAAAATC
*
255403 AGATTGCCACCAAGGCGACCCCAATTCGGACACTAAGTGATGCCAAGTCACTC-AAATCC
1 AGATTGCCACCAAGGCGACCCCAATTCGAACACTAAGTGATGCCAAGTCACTCAAAAT-C
* * *
255462 AGATCT-CCACCAAGGCGACTCCAATT-GAAATATTACA-TGATGCCAAGTCAC
1 AGAT-TGCCACCAAGGCGACCCCAATTCG-AACACTA-AGTGATGCCAAGTCAC
255513 CCCGAACCTA
Statistics
Matches: 97, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
58 5 0.05
59 88 0.91
60 4 0.04
ACGTcount: A:0.34, C:0.30, G:0.18, T:0.18
Consensus pattern (59 bp):
AGATTGCCACCAAGGCGACCCCAATTCGAACACTAAGTGATGCCAAGTCACTCAAAATC
Found at i:260209 original size:2 final size:2
Alignment explanation
Indices: 260202--260226 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
260192 ATTTTCCCTT
260202 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
260227 TCCAGTCTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:260272 original size:7 final size:7
Alignment explanation
Indices: 260260--260285 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
260250 AAAAATTTTA
260260 TAAATTT
1 TAAATTT
260267 TAAATTT
1 TAAATTT
260274 TAAATTT
1 TAAATTT
260281 TAAAT
1 TAAAT
260286 ATGATAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (7 bp):
TAAATTT
Found at i:260540 original size:14 final size:14
Alignment explanation
Indices: 260517--260551 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
260507 AGATAATCTT
*
260517 TATATATGTATATG
1 TATATATGTATATA
*
260531 TATATGTGTATATA
1 TATATATGTATATA
260545 TATATAT
1 TATATAT
260552 ATGACATGGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.51
Consensus pattern (14 bp):
TATATATGTATATA
Found at i:269518 original size:13 final size:13
Alignment explanation
Indices: 269500--269524 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
269490 AGATTGCACA
269500 GTATCGATACATT
1 GTATCGATACATT
269513 GTATCGATACAT
1 GTATCGATACAT
269525 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:269537 original size:20 final size:21
Alignment explanation
Indices: 269512--269564 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
269502 ATCGATACAT
*
269512 TGTATCGATACATG-ACCA-AA
1 TGTATCGATACATGTA-AAGAA
*
269532 TGTATCGATACTTGTAAAGAA
1 TGTATCGATACATGTAAAGAA
269553 TGTATCGATACA
1 TGTATCGATACA
269565 AGTCATTGGC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (21 bp):
TGTATCGATACATGTAAAGAA
Found at i:269642 original size:13 final size:13
Alignment explanation
Indices: 269624--269649 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
269614 TACACACAAG
269624 ATGTATCGATACA
1 ATGTATCGATACA
269637 ATGTATCGATACA
1 ATGTATCGATACA
269650 TCCCAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:269666 original size:33 final size:32
Alignment explanation
Indices: 269606--269669 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
269596 CTTAACTCTT
*
269606 TGTATCGATACACACAAGATGTATCGATACAA
1 TGTATCGATACACACAAAATGTATCGATACAA
*
269638 TGTATCGATACATCCCAAAATGTATCGATACA
1 TGTATCGATACA-CACAAAATGTATCGATACA
269670 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.27
Consensus pattern (32 bp):
TGTATCGATACACACAAAATGTATCGATACAA
Found at i:275717 original size:13 final size:13
Alignment explanation
Indices: 275699--275723 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
275689 AAAACTCAGA
275699 TGTATCGATACAG
1 TGTATCGATACAG
275712 TGTATCGATACA
1 TGTATCGATACA
275724 AAGGTTTATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:276194 original size:20 final size:22
Alignment explanation
Indices: 276169--276212 Score: 65
Period size: 20 Copynumber: 2.1 Consensus size: 22
276159 CAGCACTCAT
*
276169 CAGGTCGCGACC-GGCA-CCCC
1 CAGGTCGCAACCGGGCAGCCCC
276189 CAGGTCGCAACCGGGCAGCCCC
1 CAGGTCGCAACCGGGCAGCCCC
276211 CA
1 CA
276213 CACTCATAGC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 11 0.52
21 4 0.19
22 6 0.29
ACGTcount: A:0.18, C:0.48, G:0.30, T:0.05
Consensus pattern (22 bp):
CAGGTCGCAACCGGGCAGCCCC
Found at i:278339 original size:20 final size:20
Alignment explanation
Indices: 278294--278365 Score: 110
Period size: 20 Copynumber: 3.6 Consensus size: 20
278284 CTTAACTCTT
* *
278294 TGTATCGATACA-CACAAGA
1 TGTATCGATACATCCCAAAA
*
278313 CGTATCGATACATCCCAAAA
1 TGTATCGATACATCCCAAAA
278333 TGTATCGATACATCCCAAAA
1 TGTATCGATACATCCCAAAA
278353 TGTATCGATACAT
1 TGTATCGATACAT
278366 TGGCTTGTAA
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
19 11 0.23
20 37 0.77
ACGTcount: A:0.39, C:0.24, G:0.12, T:0.25
Consensus pattern (20 bp):
TGTATCGATACATCCCAAAA
Found at i:279805 original size:5 final size:5
Alignment explanation
Indices: 279786--279953 Score: 50
Period size: 5 Copynumber: 34.2 Consensus size: 5
279776 CAATGTAAGC
* * * **
279786 AAAT- AAATA ATATA AAAT- AAATA AAATA TAATG AAATGA AAAT- AAAGG
1 AAATA AAATA AAATA AAATA AAATA AAATA AAATA AAAT-A AAATA AAATA
* * *
279834 AAATA ACATA AGGTAACA AAATA AAAT- AAATA ACATGA AAA-A AAATA
1 AAATA AAATA A---AATA AAATA AAATA AAATA AAAT-A AAATA AAATA
* * * * * * *
279881 ACA-A GAATA AAAGTA AAAT- AAATA ACATG AATTT AAATA ACAATA ACA-A
1 AAATA AAATA AAA-TA AAATA AAATA AAATA AAATA AAATA A-AATA AAATA
* *
279930 AAGTA AAAT- AAATA ACA-A AAATA A
1 AAATA AAATA AAATA AAATA AAATA A
279954 TAACAAGTAA
Statistics
Matches: 115, Mismatches: 32, Indels: 33
0.64 0.18 0.18
Matches are distributed among these distances:
4 34 0.30
5 61 0.53
6 17 0.15
8 3 0.03
ACGTcount: A:0.69, C:0.05, G:0.07, T:0.20
Consensus pattern (5 bp):
AAATA
Found at i:279805 original size:14 final size:14
Alignment explanation
Indices: 279786--279881 Score: 68
Period size: 14 Copynumber: 6.7 Consensus size: 14
279776 CAATGTAAGC
*
279786 AAATAAATAATATA
1 AAATAAATAAAATA
279800 AAATAAATAAAATA
1 AAATAAATAAAATA
*
279814 TAATGAAATGAAAATA
1 AAAT-AAAT-AAAATA
** *
279830 AAGGAAATAACATA
1 AAATAAATAAAATA
** *
279844 AGGT-AACAAAATA
1 AAATAAATAAAATA
*
279857 AAATAAATAACATGA
1 AAATAAATAAAAT-A
*
279872 AAAAAAATAA
1 AAATAAATAA
279882 CAAGAATAAA
Statistics
Matches: 63, Mismatches: 15, Indels: 7
0.74 0.18 0.08
Matches are distributed among these distances:
13 9 0.14
14 29 0.46
15 18 0.29
16 7 0.11
ACGTcount: A:0.70, C:0.03, G:0.07, T:0.20
Consensus pattern (14 bp):
AAATAAATAAAATA
Found at i:279822 original size:10 final size:9
Alignment explanation
Indices: 279786--279953 Score: 58
Period size: 9 Copynumber: 17.7 Consensus size: 9
279776 CAATGTAAGC
279786 AAAT-AAAT
1 AAATAAAAT
279794 AATATAAAAT
1 AA-ATAAAAT
279804 AAATAAAAT
1 AAATAAAAT
*
279813 ATAATGAAAT
1 A-AATAAAAT
**
279823 GAAAATAAAGG
1 --AAATAAAAT
*
279834 AAATAACAT
1 AAATAAAAT
* *
279843 AAGGTAACA-
1 AA-ATAAAAT
279852 AAATAAAAT
1 AAATAAAAT
*
279861 AAATAACAT
1 AAATAAAAT
*
279870 GAAAAAAAAT
1 -AAATAAAAT
*
279880 AACA-AGAAT
1 AA-ATAAAAT
279889 AAAAGTAAAAT
1 -AAA-TAAAAT
*
279900 AAATAACAT
1 AAATAAAAT
* *
279909 GAATTTAAAT
1 -AAATAAAAT
279919 AACAATAACAA-
1 -A-AATAA-AAT
*
279930 AAGTAAAAT
1 AAATAAAAT
279939 AAATAACAA-
1 AAATAA-AAT
279948 AAATAA
1 AAATAA
279954 TAACAAGTAA
Statistics
Matches: 119, Mismatches: 24, Indels: 33
0.68 0.14 0.19
Matches are distributed among these distances:
8 8 0.07
9 55 0.46
10 41 0.34
11 12 0.10
12 3 0.03
ACGTcount: A:0.69, C:0.05, G:0.07, T:0.20
Consensus pattern (9 bp):
AAATAAAAT
Found at i:279901 original size:39 final size:39
Alignment explanation
Indices: 279848--279946 Score: 146
Period size: 39 Copynumber: 2.6 Consensus size: 39
279838 AACATAAGGT
279848 AACAAAA-TAAAATAAATAACATGAAAAAAAATAACAAG
1 AACAAAAGTAAAATAAATAACATGAAAAAAAATAACAAG
* *** *
279886 AATAAAAGTAAAATAAATAACATGAATTTAAATAACAAT
1 AACAAAAGTAAAATAAATAACATGAAAAAAAATAACAAG
279925 AACAAAAGTAAAATAAATAACA
1 AACAAAAGTAAAATAAATAACA
279947 AAAATAATAA
Statistics
Matches: 54, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
38 6 0.11
39 48 0.89
ACGTcount: A:0.70, C:0.07, G:0.05, T:0.18
Consensus pattern (39 bp):
AACAAAAGTAAAATAAATAACATGAAAAAAAATAACAAG
Found at i:281471 original size:27 final size:28
Alignment explanation
Indices: 281435--281504 Score: 70
Period size: 27 Copynumber: 2.5 Consensus size: 28
281425 GTGAAAGACA
* * * *
281435 TAATTGAAAATTTCGTATATGAGAA-TT
1 TAATTAAAAATTTCATAAATGAAAAGTT
* **
281462 TTATTAAAAAACTCATAAATGAAAAGTT
1 TAATTAAAAATTTCATAAATGAAAAGTT
281490 TAATTAAAAATTTCA
1 TAATTAAAAATTTCA
281505 CATGTGATAG
Statistics
Matches: 32, Mismatches: 10, Indels: 1
0.74 0.23 0.02
Matches are distributed among these distances:
27 18 0.56
28 14 0.44
ACGTcount: A:0.49, C:0.06, G:0.09, T:0.37
Consensus pattern (28 bp):
TAATTAAAAATTTCATAAATGAAAAGTT
Found at i:281781 original size:27 final size:26
Alignment explanation
Indices: 281711--281793 Score: 86
Period size: 22 Copynumber: 3.3 Consensus size: 26
281701 TTTATTCGTA
*
281711 AAAAATTTAA-TAAAAGTCTATATGT
1 AAAAATTTAATTAAAACTCTATATGT
*
281736 AAACA--T--TTAAAACTCTATATGT
1 AAAAATTTAATTAAAACTCTATATGT
*
281758 AAAAATTTAATTAAAATTTCTATATGT
1 AAAAATTTAATTAAAA-CTCTATATGT
*
281785 AAAAGTTTA
1 AAAAATTTA
281794 CTATAAAAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
22 18 0.38
23 1 0.02
24 1 0.02
25 4 0.09
26 6 0.13
27 17 0.36
ACGTcount: A:0.49, C:0.06, G:0.06, T:0.39
Consensus pattern (26 bp):
AAAAATTTAATTAAAACTCTATATGT
Found at i:281808 original size:27 final size:27
Alignment explanation
Indices: 281751--281808 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
281741 TTTAAAACTC
* *
281751 TATATGTAAAAATTTAATTAAAATTTC
1 TATATGTAAAAATTTAATTAAAATATA
* *
281778 TATATGTAAAAGTTTACTATAAAA-ATA
1 TATATGTAAAAATTTAAT-TAAAATATA
281805 TATA
1 TATA
281809 AAAATTACAG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
27 21 0.81
28 5 0.19
ACGTcount: A:0.50, C:0.03, G:0.05, T:0.41
Consensus pattern (27 bp):
TATATGTAAAAATTTAATTAAAATATA
Found at i:282188 original size:16 final size:15
Alignment explanation
Indices: 282167--282197 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
282157 TCGATACATC
282167 ACTGTTCATCACTGTT
1 ACTGTTCAT-ACTGTT
282183 ACTGTTCATACTGTT
1 ACTGTTCATACTGTT
282198 CACGTATCAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.19, C:0.23, G:0.13, T:0.45
Consensus pattern (15 bp):
ACTGTTCATACTGTT
Found at i:291624 original size:174 final size:170
Alignment explanation
Indices: 291067--291651 Score: 742
Period size: 174 Copynumber: 3.5 Consensus size: 170
291057 TTAATTCCAT
*
291067 TTTAATTTTATTTA-TTTTTGAAAATACCATTTCGTACCCTAGTGGAAGCCCGAAAGAATACGAA
1 TTTAATTTTATTTATTTTTTGAAAATACCATTTCGTACCCTAATGGAAGCCCGAAAGAATACG-A
* * *
291131 AAG---TTTTTGAAATCTTTTATACCCCTACGGATGCCCATAGGAATATAAAAGATTAGAA-AAA
65 AAGTTTTTTTTGAAATCTTTCATACCCCTACAGATGCCCATAAGAATATAAAAGATTAGAATAAA
291192 AAGATATTAGAATTTATCCCGATAATACCAATTT-AA--T-
130 AAGATATTAGAATTTATCCCGATAATACCAATTTCAATTTA
* *
291229 TTT-ATTTTATTTA-TTTTTGAAAATACTATTTCGTACCCTAATGAAAGCCCGAAAGAA-ACGAA
1 TTTAATTTTATTTATTTTTTGAAAATACCATTTCGTACCCTAATGGAAGCCCGAAAGAATACGAA
* ** *
291291 AGGTTTTTTTGAAATCTTTCATACCTTTACGGATGCCCATAAGAATATAAAAGATTAGAAAATAA
66 AGTTTTTTTTGAAATCTTTCATACCCCTACAGATGCCCATAAGAATATAAAAGATTAG--AATAA
* *
291356 AAAGATATTATAATTTATCCCGATAATGCCAATTT--A---A
129 AAAGATATTAGAATTTATCCCGATAATACCAATTTCAATTTA
* * *
291393 TTTAATTTTATTTATTTATTGAAAATATCATTTCGTACCCTAATGGAAGCTCGAAAGAATACGAA
1 TTTAATTTTATTTATTTTTTGAAAATACCATTTCGTACCCTAATGGAAGCCCGAAAGAATACG-A
* *
291458 AAGTTTTTTTTGAAATCATTT-ATGCCCCTACAGATGCCCATAAGAATATAAAATATTAG-A-AA
65 AAGTTTTTTTTGAAATC-TTTCATACCCCTACAGATGCCCATAAGAATATAAAAGATTAGAATAA
*
291520 AAAGATATTAGAATTTATCTCGATAATACCAATTTAATTCAATTTTA
129 AAAGATATTAGAATTTATCCCGATAATACCAA--T--TTCAA-TTTA
*
291567 TTTAATTTTATTTATTTTTTAAAAATACCATTTCGTACCCTAATGGAAGCCCGAAAGAATACGAA
1 TTTAATTTTATTTATTTTTTGAAAATACCATTTCGTACCCTAATGGAAGCCCGAAAGAATACGAA
* *
291632 GGTTTTTTTTTTAAATCTTT
66 AG-TTTTTTTTGAAATCTTT
291652 TATATCTCTA
Statistics
Matches: 371, Mismatches: 29, Indels: 35
0.85 0.07 0.08
Matches are distributed among these distances:
159 4 0.01
160 3 0.01
161 51 0.14
162 52 0.14
164 37 0.10
165 46 0.12
166 40 0.11
167 3 0.01
168 52 0.14
169 3 0.01
170 1 0.00
173 6 0.02
174 73 0.20
ACGTcount: A:0.38, C:0.14, G:0.11, T:0.37
Consensus pattern (170 bp):
TTTAATTTTATTTATTTTTTGAAAATACCATTTCGTACCCTAATGGAAGCCCGAAAGAATACGAA
AGTTTTTTTTGAAATCTTTCATACCCCTACAGATGCCCATAAGAATATAAAAGATTAGAATAAAA
AGATATTAGAATTTATCCCGATAATACCAATTTCAATTTA
Found at i:293721 original size:28 final size:28
Alignment explanation
Indices: 293658--293741 Score: 100
Period size: 28 Copynumber: 3.0 Consensus size: 28
293648 TTCTCGATGA
*
293658 GAAATAACGGGGTTGGAGTGTTCCCTCG--
1 GAAATAACGGGGTTGGAGT-ATCCC-CGAT
*
293686 GAAGTAACGGGGTTGGAGTATCCCCGAT
1 GAAATAACGGGGTTGGAGTATCCCCGAT
* *
293714 GAAATAACGAGGTTGGAGTATCCTCGAT
1 GAAATAACGGGGTTGGAGTATCCCCGAT
293742 TGTGAAAAAT
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
26 2 0.04
27 4 0.08
28 43 0.88
ACGTcount: A:0.26, C:0.17, G:0.33, T:0.24
Consensus pattern (28 bp):
GAAATAACGGGGTTGGAGTATCCCCGAT
Found at i:293834 original size:51 final size:52
Alignment explanation
Indices: 293725--293841 Score: 173
Period size: 51 Copynumber: 2.3 Consensus size: 52
293715 AAATAACGAG
* * ***
293725 GTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGT
1 GTTGGAGTATCCCCGATTATGAAAAATCAATATTTTTGGAAATAAAATCGGT
*
293777 GTTGGAGTATCCCCGATTATGAAAAATCAATA-TTTTGGAAATAAAGTCGGT
1 GTTGGAGTATCCCCGATTATGAAAAATCAATATTTTTGGAAATAAAATCGGT
293828 GTTGGAGTATCCCC
1 GTTGGAGTATCCCC
293842 TCGGAAATAA
Statistics
Matches: 59, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
51 32 0.54
52 27 0.46
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.33
Consensus pattern (52 bp):
GTTGGAGTATCCCCGATTATGAAAAATCAATATTTTTGGAAATAAAATCGGT
Found at i:293863 original size:28 final size:28
Alignment explanation
Indices: 293828--293923 Score: 138
Period size: 28 Copynumber: 3.4 Consensus size: 28
293818 TAAAGTCGGT
293828 GTTGGAGTATCCCCTCGGAAATAACGGG
1 GTTGGAGTATCCCCTCGGAAATAACGGG
* *
293856 GTTGGAGTATTCCCTCGGAAGTAACGGG
1 GTTGGAGTATCCCCTCGGAAATAACGGG
*** *
293884 GTTGGAGTATCCCCGATGAAATAACGAG
1 GTTGGAGTATCCCCTCGGAAATAACGGG
293912 GTTGGAGTATCC
1 GTTGGAGTATCC
293924 TCGATTGTGA
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 60 1.00
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.24
Consensus pattern (28 bp):
GTTGGAGTATCCCCTCGGAAATAACGGG
Found at i:293973 original size:187 final size:188
Alignment explanation
Indices: 293658--294029 Score: 647
Period size: 187 Copynumber: 2.0 Consensus size: 188
293648 TTCTCGATGA
*
293658 GAAATAACGGGGTTGGAGTGTTCCCTCGGAAGTAACGGGGTTGGAGTATCCCCGATGAAATAACG
1 GAAATAACGGGGTTGGAGTATTCCCTCGGAAGTAACGGGGTTGGAGTATCCCCGATGAAATAACG
293723 AGGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGTGTTGGAGTATC
66 AGGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGTGTTGGAGTATC
* * ** *
293788 CCCGATT-ATGAAAAATCAATATTTTGGAAATAAAGTCGGTGTTGGAGTATCCCCTCG
131 CCCGATTAAAGAAAAATCAATATTTTGAAAATAAAACCGGGGTTGGAGTATCCCCTCG
293845 GAAATAACGGGGTTGGAGTATTCCCTCGGAAGTAACGGGGTTGGAGTATCCCCGATGAAATAACG
1 GAAATAACGGGGTTGGAGTATTCCCTCGGAAGTAACGGGGTTGGAGTATCCCCGATGAAATAACG
293910 AGGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGTGTTGGAGTATC
66 AGGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGTGTTGGAGTATC
* * * *
293975 CCCGATTAAAGGAAAATTAGTGTTTTGAAAATAAAACCGGGGTTGGAGTATCCCC
131 CCCGATTAAAGAAAAATCAATATTTTGAAAATAAAACCGGGGTTGGAGTATCCCC
294030 GATTATGAAA
Statistics
Matches: 174, Mismatches: 10, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
187 136 0.78
188 38 0.22
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.28
Consensus pattern (188 bp):
GAAATAACGGGGTTGGAGTATTCCCTCGGAAGTAACGGGGTTGGAGTATCCCCGATGAAATAACG
AGGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGTGTTGGAGTATC
CCCGATTAAAGAAAAATCAATATTTTGAAAATAAAACCGGGGTTGGAGTATCCCCTCG
Found at i:294067 original size:51 final size:51
Alignment explanation
Indices: 293911--294080 Score: 214
Period size: 52 Copynumber: 3.3 Consensus size: 51
293901 GAAATAACGA
* * *
293911 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTAGTA-TTTTGGAAATAAAATCGG
* * * * * *
293963 TGTTGGAGTATCCCCGATTAAAGGAAAATTAGTGTTTTGAAAATAAAACCGG
1 GGTTGGAGTATCCCCGATT-ATGAAAAATTAGTATTTTGGAAATAAAATCGG
* * *
294015 GGTTGGAGTATCCCCGATTATGAAAAATCAATATTTTGGAAATAAAGTCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTAGTATTTTGGAAATAAAATCGG
294066 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
294081 TCGGAAATAA
Statistics
Matches: 99, Mismatches: 18, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
51 39 0.39
52 51 0.52
53 9 0.09
ACGTcount: A:0.32, C:0.12, G:0.25, T:0.31
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATGAAAAATTAGTATTTTGGAAATAAAATCGG
Found at i:294094 original size:211 final size:212
Alignment explanation
Indices: 293852--294245 Score: 605
Period size: 211 Copynumber: 1.9 Consensus size: 212
293842 TCGGAAATAA
* *
293852 CGGGGTTGGAGTATTCCCTCGGAAGTAACGGGGTTGGAGTATCCCCGATGAAATAACGAGGTTGG
1 CGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATG-AATAACGAGGTTGG
* * *
293917 AGTATCCTCGATTGTGAA-AAATTGGT-ATTTTTGG-AAATAAAATCGGTGTTGGAGTATCCCCG
65 AGTATCCCCGATTGTGAAGAAATTGGTGATTTTTGGAAAATAAAATCAGAGTTGGAGTATCCCCG
* * *
293979 ATTAAAGGAAAATTAGTGTTTTGAAAATAAAACCGGGGTTGGAGTATCCCCGATTATGAAAAATC
130 ATTAAA-GAAAATTAGTGTTTTGAAAATAAAACCGGAGTTAGAATATCCCCGATTATGAAAAATC
294044 AATATTTTGGAAATAAAGT
194 AATATTTTGGAAATAAAGT
* * *
294063 CGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCTCGATGATTAACGGGGTTGGA
1 CGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATGAATAACGAGGTTGGA
* * *
294128 GTGTCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAAATAAAATCAGAGTTTGAGTATCCCCGA
66 GTATCCCCGATTGTGAAGAAATTGGTGATTTTTGGAAAATAAAATCAGAGTTGGAGTATCCCCGA
* *
294193 TTATAGAAAATTAGTGTTTTGAAAATAAAATCGGAGTTAGAATATCCCCGATT
131 TTAAAGAAAATTAGTGTTTTGAAAATAAAACCGGAGTTAGAATATCCCCGATT
294246 GTGGAGAATT
Statistics
Matches: 164, Mismatches: 16, Indels: 5
0.89 0.09 0.03
Matches are distributed among these distances:
210 28 0.17
211 55 0.34
212 51 0.31
213 30 0.18
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.29
Consensus pattern (212 bp):
CGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATGAATAACGAGGTTGGA
GTATCCCCGATTGTGAAGAAATTGGTGATTTTTGGAAAATAAAATCAGAGTTGGAGTATCCCCGA
TTAAAGAAAATTAGTGTTTTGAAAATAAAACCGGAGTTAGAATATCCCCGATTATGAAAAATCAA
TATTTTGGAAATAAAGT
Found at i:294098 original size:28 final size:28
Alignment explanation
Indices: 294063--294135 Score: 89
Period size: 27 Copynumber: 2.6 Consensus size: 28
294053 GAAATAAAGT
294063 CGGGGTTGGAGTATCCCCTCG-GAAATAA
1 CGGGGTTGGAGTATCCCCTCGAG-AATAA
*
294091 CGGGGTTGGAGTAT--CCTCGATGATTAA
1 CGGGGTTGGAGTATCCCCTCGA-GAATAA
*
294118 CGGGGTTGGAGTGTCCCC
1 CGGGGTTGGAGTATCCCC
294136 GATTGTGAAG
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
26 5 0.13
27 17 0.44
28 15 0.38
29 2 0.05
ACGTcount: A:0.19, C:0.21, G:0.36, T:0.25
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCTCGAGAATAA
Found at i:296629 original size:13 final size:13
Alignment explanation
Indices: 296611--296636 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
296601 ACAAAGATCC
296611 ATGTATCGATACA
1 ATGTATCGATACA
296624 ATGTATCGATACA
1 ATGTATCGATACA
296637 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:296632 original size:33 final size:33
Alignment explanation
Indices: 296590--296656 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
296580 AAAATTTCCA
***
296590 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
296623 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
296656 A
1 A
296657 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:296700 original size:19 final size:18
Alignment explanation
Indices: 296676--296743 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
296666 CAGTAGCTAA
296676 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
296695 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
296710 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
296727 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
296744 TTGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:296716 original size:13 final size:13
Alignment explanation
Indices: 296698--296722 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
296688 ACAATACTTA
296698 TGTATCGATACAT
1 TGTATCGATACAT
296711 TGTATCGATACA
1 TGTATCGATACA
296723 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:296720 original size:32 final size:32
Alignment explanation
Indices: 296679--296741 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
296669 TAGCTAATTA
*
296679 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
296711 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
296742 AATTGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:296809 original size:21 final size:21
Alignment explanation
Indices: 296798--296855 Score: 107
Period size: 21 Copynumber: 2.8 Consensus size: 21
296788 ACATTTGTAG
*
296798 AATGTATCGATACATTCCACA
1 AATGTATCGATACATTCTACA
296819 AATGTATCGATACATTCTACA
1 AATGTATCGATACATTCTACA
296840 AATGTATCGATACATT
1 AATGTATCGATACATT
296856 TGGATAAATT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (21 bp):
AATGTATCGATACATTCTACA
Found at i:297897 original size:59 final size:59
Alignment explanation
Indices: 297592--298072 Score: 598
Period size: 59 Copynumber: 8.3 Consensus size: 59
297582 ATAAAGTGTA
* * * *
297592 TCCTGCTCTTTGAGGACTAAAATGTGCCACGAACTCGTGTGGGCTTT----G-AAAGGCG
1 TCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
*
297647 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT--AAG---AGGTG
1 TCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
** * *
297702 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACATGTGTGGGCTTT-----AAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * * *
297757 TCCAGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCG
*
297818 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGGGTGGGCTTTAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* *
297877 TCCCGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAATGCG
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* *
297936 TCCCGCTCTTTGAGGACTGAAGGTGCCACCAACTTGGGTGGGCTTTAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
***
297995 TTCC-GCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGGGTAGGCG
1 -TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGCG
298055 TCCTGCTCTTTGAGGACT
1 TCCTGCTCTTTGAGGACT
298073 AAAAAGCGGA
Statistics
Matches: 379, Mismatches: 30, Indels: 29
0.87 0.07 0.07
Matches are distributed among these distances:
54 1 0.00
55 133 0.35
56 1 0.00
57 1 0.00
59 172 0.45
60 49 0.13
61 22 0.06
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (59 bp):
TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
Found at i:299076 original size:15 final size:15
Alignment explanation
Indices: 299058--299092 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
299048 TTTTCTCTCC
*
299058 TTTTTCTTTGTTTTT
1 TTTTTCTTTGCTTTT
*
299073 TTTTTGTTTGCTTTT
1 TTTTTCTTTGCTTTT
299088 TTTTT
1 TTTTT
299093 AAGAGAAGGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.00, C:0.06, G:0.09, T:0.86
Consensus pattern (15 bp):
TTTTTCTTTGCTTTT
Found at i:311418 original size:28 final size:28
Alignment explanation
Indices: 311357--311438 Score: 96
Period size: 28 Copynumber: 2.9 Consensus size: 28
311347 TTTTGGAGAT
*
311357 AATAACGGGGTTGGAGTGTTCCCTCG--GA
1 AATAACGGGGTTGGAGT-ATCCC-CGATGA
*
311385 AGTAACGGGGTTGGAGTATCCCCGATGA
1 AATAACGGGGTTGGAGTATCCCCGATGA
* *
311413 AATAACGAGGTTGGAGTATCCTCGAT
1 AATAACGGGGTTGGAGTATCCCCGAT
311439 TGTGAAAAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
26 2 0.04
27 4 0.09
28 41 0.87
ACGTcount: A:0.26, C:0.17, G:0.33, T:0.24
Consensus pattern (28 bp):
AATAACGGGGTTGGAGTATCCCCGATGA
Found at i:311482 original size:52 final size:51
Alignment explanation
Indices: 311421--311591 Score: 198
Period size: 53 Copynumber: 3.3 Consensus size: 51
311411 GAAATAACGA
* *
311421 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGAAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGGTA-TTTTGAAAATAAAATCGG
* * * * * *
311473 TGTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAAAAAAAAACCGG
1 GGTTGGAGTATCCCCGATT-ATGAAAAATTGGTATTTTG-AAAATAAAATCGG
*** * *
311526 GGTTGGAGTATCCCCGATTATGAAAAATCAATATTTTGGAAATAAAGTCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTGAAAATAAAATCGG
311577 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
311592 TCGGAAATAA
Statistics
Matches: 98, Mismatches: 19, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
51 24 0.24
52 35 0.36
53 39 0.40
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTGAAAATAAAATCGG
Found at i:311609 original size:28 final size:28
Alignment explanation
Indices: 311574--311672 Score: 144
Period size: 28 Copynumber: 3.5 Consensus size: 28
311564 GAAATAAAGT
311574 CGGGGTTGGAGTATCCCCTCGGAAATAA
1 CGGGGTTGGAGTATCCCCTCGGAAATAA
* *
311602 CGGGGTTGGAGTATTCCCTCGGAAGTAA
1 CGGGGTTGGAGTATCCCCTCGGAAATAA
***
311630 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCTCGGAAATAA
*
311658 CGAGGTTGGAGTATC
1 CGGGGTTGGAGTATC
311673 TTCTATTGTG
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 63 1.00
ACGTcount: A:0.24, C:0.18, G:0.34, T:0.23
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCTCGGAAATAA
Found at i:311724 original size:52 final size:51
Alignment explanation
Indices: 311661--311830 Score: 196
Period size: 52 Copynumber: 3.3 Consensus size: 51
311651 GAAATAACGA
** * * *
311661 GGTTGGAGTATCTTCTATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGGTA-TTTTGAAAATAAAATCGG
* * * * *
311713 TGTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAACCGG
1 GGTTGGAGTATCCCCGATT-ATGAAAAATTGGTATTTTGAAAATAAAATCGG
*** *
311765 GGTTGGAGTATCCCCGATTATGAAAAATCAATATTTTGAAAATAAAGTCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTGAAAATAAAATCGG
311816 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
311831 TCGGAAATAA
Statistics
Matches: 98, Mismatches: 19, Indels: 3
0.82 0.16 0.03
Matches are distributed among these distances:
51 39 0.40
52 49 0.50
53 10 0.10
ACGTcount: A:0.32, C:0.11, G:0.25, T:0.32
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTGAAAATAAAATCGG
Found at i:311817 original size:51 final size:52
Alignment explanation
Indices: 311695--311830 Score: 175
Period size: 51 Copynumber: 2.6 Consensus size: 52
311685 AAATTGGTAT
* * * *** *
311695 TTTTGGAAATAAAATCGGTGTTGGAGTATCCCCGATTAAAGGAAAATTGGTG
1 TTTTGAAAATAAAATCGGGGTTGGAGTATCCCCGATTAAAGAAAAATCAATA
* *
311747 TTTTGAAAATAAAACCGGGGTTGGAGTATCCCCGATT-ATGAAAAATCAATA
1 TTTTGAAAATAAAATCGGGGTTGGAGTATCCCCGATTAAAGAAAAATCAATA
*
311798 TTTTGAAAATAAAGTCGGGGTTGGAGTATCCCC
1 TTTTGAAAATAAAATCGGGGTTGGAGTATCCCC
311831 TCGGAAATAA
Statistics
Matches: 73, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
51 39 0.53
52 34 0.47
ACGTcount: A:0.34, C:0.12, G:0.24, T:0.29
Consensus pattern (52 bp):
TTTTGAAAATAAAATCGGGGTTGGAGTATCCCCGATTAAAGAAAAATCAATA
Found at i:311876 original size:27 final size:28
Alignment explanation
Indices: 311813--311879 Score: 91
Period size: 28 Copynumber: 2.4 Consensus size: 28
311803 AAAATAAAGT
**
311813 CGGGGTTGGAGTATCCCCTCGGAAATAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
* *
311841 CGGGGTTGGAGTATCCCCGATG-ATTAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
311868 CGGGGTTGGAGT
1 CGGGGTTGGAGT
311880 GCCCTCGATT
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
27 16 0.46
28 19 0.54
ACGTcount: A:0.21, C:0.18, G:0.37, T:0.24
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGAGGAAATAA
Found at i:311970 original size:211 final size:211
Alignment explanation
Indices: 311602--311999 Score: 593
Period size: 211 Copynumber: 1.9 Consensus size: 211
311592 TCGGAAATAA
* *
311602 CGGGGTTGGAGTATTCCCTCGGAAGTAACGGGGTTGGAGTATCCCCGATGAAATAACGAGGTTGG
1 CGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATGAAATAACGAGGTTGG
* * * * * *
311667 AGTATCTTCTATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGTGTTGGAGTATCCCCGATT
66 AGTACCCTCGATTATGAAAAATTGGTATTTTTGGAAATAAAATCAGAGTTGGAGTATCCCCGATT
* * *
311732 AAAGGAAAATTGGTGTTTTGAAAATAAAACCGGGGTTGGAGTATCCCCGATTATGAAAAATCAAT
131 AAAGGAAAATTAGTGTTTTGAAAATAAAACCGGAGTTGGAATATCCCCGATTATGAAAAATCAAT
311797 ATTTTGAAAATAAAGT
196 ATTTTGAAAATAAAGT
* *
311813 CGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATG-ATTAACGGGGTTGG
1 CGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATGAAATAACGAGGTTGG
* *
311877 AGTGCCCTCGATTATGAAGAAATTGGTGTTTTTTGGAAATAAAATCAGAGTTGGAGTATCCCCGA
66 AGTACCCTCGATTATGAA-AAATTGGT-ATTTTTGGAAATAAAATCAGAGTTGGAGTATCCCCGA
* * * *
311942 TTATA-GAAAATTAGTGTTTTGGAAATAAAATCGGAGTTGGAATATCCCCGATTGTGAA
129 TTAAAGGAAAATTAGTGTTTTGAAAATAAAACCGGAGTTGGAATATCCCCGATTATGAA
312000 GAATTGAGCA
Statistics
Matches: 166, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
210 25 0.15
211 103 0.62
212 38 0.23
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.29
Consensus pattern (211 bp):
CGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATGAAATAACGAGGTTGG
AGTACCCTCGATTATGAAAAATTGGTATTTTTGGAAATAAAATCAGAGTTGGAGTATCCCCGATT
AAAGGAAAATTAGTGTTTTGAAAATAAAACCGGAGTTGGAATATCCCCGATTATGAAAAATCAAT
ATTTTGAAAATAAAGT
Found at i:314377 original size:13 final size:13
Alignment explanation
Indices: 314359--314384 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
314349 ACAAAGATCC
314359 ATGTATCGATACA
1 ATGTATCGATACA
314372 ATGTATCGATACA
1 ATGTATCGATACA
314385 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:314380 original size:33 final size:33
Alignment explanation
Indices: 314338--314404 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
314328 AAAATTTCCA
***
314338 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
314371 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
314404 A
1 A
314405 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:314448 original size:19 final size:18
Alignment explanation
Indices: 314424--314491 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
314414 CAGTAGCTAA
314424 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
314443 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
314458 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
314475 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
314492 TTGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:314464 original size:13 final size:13
Alignment explanation
Indices: 314446--314470 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
314436 ACAATACTTA
314446 TGTATCGATACAT
1 TGTATCGATACAT
314459 TGTATCGATACA
1 TGTATCGATACA
314471 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:314468 original size:32 final size:32
Alignment explanation
Indices: 314427--314489 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
314417 TAGCTAATTA
*
314427 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
314459 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
314490 AATTGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:314553 original size:21 final size:21
Alignment explanation
Indices: 314527--314603 Score: 111
Period size: 21 Copynumber: 3.7 Consensus size: 21
314517 GTTGGGACCC
* *
314527 TGTATCGATACATTTGTA-GAA
1 TGTATCGATACA-TTCTACAAA
*
314548 TGTATCGATACATTCCACAAA
1 TGTATCGATACATTCTACAAA
314569 TGTATCGATACATTCTACAAA
1 TGTATCGATACATTCTACAAA
314590 TGTATCGATACATT
1 TGTATCGATACATT
314604 TGGATAATTT
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
20 3 0.06
21 48 0.94
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.35
Consensus pattern (21 bp):
TGTATCGATACATTCTACAAA
Found at i:320709 original size:13 final size:13
Alignment explanation
Indices: 320691--320716 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
320681 GATAAAGTGT
320691 TTGAAAAAAAAAA
1 TTGAAAAAAAAAA
320704 TTGAAAAAAAAAA
1 TTGAAAAAAAAAA
320717 AAAATTTCCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (13 bp):
TTGAAAAAAAAAA
Found at i:320751 original size:21 final size:21
Alignment explanation
Indices: 320727--320783 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
320717 AAAATTTCCA
320727 AATGTATCGATACATTTGTAG
1 AATGTATCGATACATTTGTAG
*
320748 AATGTATCGATACATTTGTGG
1 AATGTATCGATACATTTGTAG
320769 AATGTATCGATACAT
1 AATGTATCGATACAT
320784 CCTACAAATG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (21 bp):
AATGTATCGATACATTTGTAG
Found at i:320863 original size:19 final size:19
Alignment explanation
Indices: 320839--320906 Score: 85
Period size: 19 Copynumber: 3.9 Consensus size: 19
320829 AATTCAACAA
320839 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
320858 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
320873 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
320890 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
320907 TTAGCTACTG
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 2 0.05
19 28 0.65
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:320878 original size:13 final size:13
Alignment explanation
Indices: 320860--320884 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
320850 ACATAAGTTT
320860 TGTATCGATACAA
1 TGTATCGATACAA
320873 TGTATCGATACA
1 TGTATCGATACA
320885 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:320882 original size:32 final size:32
Alignment explanation
Indices: 320841--320903 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
320831 TTCAACAATT
*
320841 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
320873 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
320904 TAATTAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:320964 original size:13 final size:13
Alignment explanation
Indices: 320946--320971 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
320936 CATTTTTCTG
320946 TGTATCGATACAT
1 TGTATCGATACAT
320959 TGTATCGATACAT
1 TGTATCGATACAT
320972 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:320968 original size:33 final size:33
Alignment explanation
Indices: 320926--320992 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
320916 GCCAAGGAAA
***
320926 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
320959 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
320992 T
1 T
320993 TGGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:323388 original size:51 final size:53
Alignment explanation
Indices: 323324--323664 Score: 196
Period size: 51 Copynumber: 6.5 Consensus size: 53
323314 AGTTTATCAA
* * * *
323324 TTCTCCACAATCGGGGATATTCCAACTCCGATTTTATTTTC-AAAACACTAA-
1 TTCTTCACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAAT
* *
323375 TT-TTCTATAATCGGGGATACTCTAACTCCGATTTTATTTCCAAAAAACACCAAT
1 TTCTTC-ACAATCGGGGATACTCCAACTCCGATTTTATTTCC-AAAAACACCAAT
* * * *** * *
323429 TTCTTCACAATCGGGGATACTCCAACCCCG--TTAATCATCGGGGATACTCCAACCCCGT
1 TTCTTCACAATCGGGGATACTCCAACTCCGATTTTAT-TTC-CAAAAACACCAA-----T
* * * * *
323487 TAT-TTC-CGA--GGGGATACTCCAACCCCGGTTTTA--TCGCTAAAACACTAAT
1 T-TCTTCACAATCGGGGATACTCCAACTCCGATTTTATTTC-CAAAAACACCAAT
* * *
323536 TT-TTCCACAATC-GGGATACTCCAA-TCCTGGTTTTATTTTC-AAAACGCCAATT
1 TTCTT-CACAATCGGGGATACTCCAACTCC-GATTTTATTTCCAAAAACACCAA-T
* *
323588 TTCCTT--TAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAAT
1 TT-CTTCACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAAT
*
323640 TT-TTCACAATCGAGGATACTCCAAC
1 TTCTTCACAATCGGGGATACTCCAAC
323665 CTCGTTATTT
Statistics
Matches: 224, Mismatches: 36, Indels: 59
0.70 0.11 0.18
Matches are distributed among these distances:
48 3 0.01
49 3 0.01
50 8 0.04
51 64 0.29
52 50 0.22
53 30 0.13
54 34 0.15
55 21 0.09
57 5 0.02
58 5 0.02
59 1 0.00
ACGTcount: A:0.29, C:0.27, G:0.12, T:0.32
Consensus pattern (53 bp):
TTCTTCACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAAT
Found at i:323468 original size:27 final size:28
Alignment explanation
Indices: 323438--323513 Score: 109
Period size: 27 Copynumber: 2.8 Consensus size: 28
323428 TTTCTTCACA
323438 ATCGGGGATACTCCAACCCCGTTA-ATC
1 ATCGGGGATACTCCAACCCCGTTATATC
*
323465 ATCGGGGATACTCCAACCCCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTATATC
***
323493 CGAGGGGATACTCCAACCCCG
1 ATCGGGGATACTCCAACCCCG
323514 GTTTTATCGC
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
27 24 0.55
28 20 0.45
ACGTcount: A:0.24, C:0.34, G:0.21, T:0.21
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTATATC
Found at i:323684 original size:28 final size:27
Alignment explanation
Indices: 323648--323722 Score: 87
Period size: 28 Copynumber: 2.7 Consensus size: 27
323638 ATTTTTCACA
* *
323648 ATCGAGGATACTCCAACCTCGTTATTTC
1 ATCGGGGATACTCCAACC-CGTTACTTC
323676 ATCGGGGATACTCCAACGCCGTTACTTC
1 ATCGGGGATACTCCAAC-CCGTTACTTC
***
323704 CGAGGGGATACTCCAACCC
1 ATCGGGGATACTCCAACCC
323723 CGGCTTTATT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
27 2 0.05
28 38 0.93
29 1 0.02
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (27 bp):
ATCGGGGATACTCCAACCCGTTACTTC
Found at i:323707 original size:211 final size:212
Alignment explanation
Indices: 323327--323731 Score: 638
Period size: 211 Copynumber: 1.9 Consensus size: 212
323317 TTATCAATTC
* *
323327 TCCACAATCGGGGATATTCCAACTCCGATTTTATTTTCAAAACACTAATTTTCTATAATCGGGGA
1 TCCACAATCGGGGATACTCCAACTCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGA
* *
323392 TACTCTAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGGGGATACTCCAACCC
66 TACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACCC
* *
323457 CGTTAATCATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTTTTATC
131 CGTTAATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGGCTTTATC
323522 GCTAAAACACTAATTTT
196 GCTAAAACACTAATTTT
* * *
323539 TCCACAATC-GGGATACTCCAA-TCCTGGTTTTATTTTCAAAACGCCAATTTTCCTTTAATCGGG
1 TCCACAATCGGGGATACTCCAACTCC-GATTTTATTTTCAAAACACCAATTTT-CTATAATCGGG
*
323602 GATACTCCAACTCCGATTTTATTTCC-AAAAATACCAATTT-TTCACAATCGAGGATACTCCAAC
64 GATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAAC
* * *
323665 CTCGTTATTTCATCGGGGATACTCCAACGCCGTTACTTCCGAGGGGATACTCCAACCCCGGCTTT
129 CCCGTTA-ATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGGCTTT
323730 AT
193 AT
323732 TTCTAATCAT
Statistics
Matches: 177, Mismatches: 13, Indels: 7
0.90 0.07 0.04
Matches are distributed among these distances:
210 31 0.18
211 102 0.58
212 44 0.25
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (212 bp):
TCCACAATCGGGGATACTCCAACTCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGA
TACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACCC
CGTTAATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGGCTTTATC
GCTAAAACACTAATTTT
Found at i:324841 original size:27 final size:25
Alignment explanation
Indices: 324811--324862 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 25
324801 AAAATTTTAT
324811 TTATATTAATAATAAAATATATAAATA
1 TTATATTAATAATAAAA-AT-TAAATA
*
324838 TTATATTAATATTAAAAATTAAATA
1 TTATATTAATAATAAAAATTAAATA
324863 AAATGATTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 6 0.25
26 2 0.08
27 16 0.67
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (25 bp):
TTATATTAATAATAAAAATTAAATA
Found at i:324850 original size:33 final size:33
Alignment explanation
Indices: 324792--324862 Score: 83
Period size: 33 Copynumber: 2.2 Consensus size: 33
324782 TAAAAAATTA
* * *
324792 AAAAT-TATTAAAATTTTATTTATATTAATAAT
1 AAAATATATTAAAATTATATTAATATTAAAAAT
324824 AAAATATA-TAAATATTATATTAATATTAAAAAT
1 AAAATATATTAAA-ATTATATTAATATTAAAAAT
*
324857 TAAATA
1 AAAATA
324863 AAATGATTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
32 9 0.27
33 24 0.73
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (33 bp):
AAAATATATTAAAATTATATTAATATTAAAAAT
Found at i:328057 original size:16 final size:16
Alignment explanation
Indices: 328037--328084 Score: 78
Period size: 16 Copynumber: 3.0 Consensus size: 16
328027 TATCGCTTAT
*
328037 AATTTAAGTTATTTTA
1 AATTTAAATTATTTTA
*
328053 GATTTAAATTATTTTA
1 AATTTAAATTATTTTA
328069 AATTTAAATTATTTTA
1 AATTTAAATTATTTTA
328085 TTTTGATATT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (16 bp):
AATTTAAATTATTTTA
Found at i:328095 original size:22 final size:21
Alignment explanation
Indices: 328061--328141 Score: 76
Period size: 21 Copynumber: 3.8 Consensus size: 21
328051 TAGATTTAAA
328061 TTATTTTAAATTTAAATTATT
1 TTATTTTAAATTTAAATTATT
*
328082 TTATTTTGATATTTAAATTATT
1 TTATTTT-AAATTTAAATTATT
** * *
328104 CGAGTTTAAATTTAATTTATT
1 TTATTTTAAATTTAAATTATT
328125 ATCT-TTTTAAA-TTAAAT
1 -T-TATTTTAAATTTAAAT
328142 CAAATTAAAA
Statistics
Matches: 47, Mismatches: 10, Indels: 6
0.75 0.16 0.10
Matches are distributed among these distances:
21 24 0.51
22 23 0.49
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.58
Consensus pattern (21 bp):
TTATTTTAAATTTAAATTATT
Found at i:328123 original size:38 final size:38
Alignment explanation
Indices: 328037--328124 Score: 99
Period size: 38 Copynumber: 2.3 Consensus size: 38
328027 TATCGCTTAT
* *
328037 AATTTAAGTTATTTTAGATTTAAATTATTTTAAATTTA
1 AATTTAATTTATTTTAGATTTAAATTATTTCAAATTTA
* * * *
328075 AA-TTATTTTATTTTGATATTTAAATTA-TTCGAGTTTA
1 AATTTAATTTATTTT-AGATTTAAATTATTTCAAATTTA
328112 AATTTAATTTATT
1 AATTTAATTTATT
328125 ATCTTTTTAA
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
37 19 0.46
38 22 0.54
ACGTcount: A:0.36, C:0.01, G:0.06, T:0.57
Consensus pattern (38 bp):
AATTTAATTTATTTTAGATTTAAATTATTTCAAATTTA
Found at i:328578 original size:20 final size:20
Alignment explanation
Indices: 328555--328605 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
328545 ACTTATTGTC
328555 AATTATATTTATTTTAAAAT
1 AATTATATTTATTTTAAAAT
*
328575 AATTATTATTGA-TTTAAAAT
1 AATTA-TATTTATTTTAAAAT
328595 AATTAT-TTTAT
1 AATTATATTTAT
328606 CAAAGTGAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
18 3 0.11
19 1 0.04
20 18 0.67
21 5 0.19
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (20 bp):
AATTATATTTATTTTAAAAT
Found at i:329209 original size:2 final size:2
Alignment explanation
Indices: 329202--329226 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
329192 TAATTCTATT
329202 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
329227 TTATGGATTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:330895 original size:19 final size:20
Alignment explanation
Indices: 330871--330914 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
330861 ATATAAAAAT
330871 AAAATAAATACG-ATATAAA
1 AAAATAAATACGAATATAAA
*
330890 AAAAT-AATATGAATATAAA
1 AAAATAAATACGAATATAAA
*
330909 ATAATA
1 AAAATA
330915 TGATTTAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.68, C:0.02, G:0.05, T:0.25
Consensus pattern (20 bp):
AAAATAAATACGAATATAAA
Found at i:330898 original size:22 final size:20
Alignment explanation
Indices: 330848--330898 Score: 59
Period size: 22 Copynumber: 2.5 Consensus size: 20
330838 AAAATGATTG
*
330848 AAAATAATATATAATATAAA
1 AAAATAATAAATAATATAAA
330868 AATAA-AATAAATACGATATAAA
1 AA-AATAATAAATA--ATATAAA
330890 AAAATAATA
1 AAAATAATA
330899 TGAATATAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
20 9 0.35
21 4 0.15
22 13 0.50
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.25
Consensus pattern (20 bp):
AAAATAATAAATAATATAAA
Found at i:330925 original size:15 final size:16
Alignment explanation
Indices: 330858--330926 Score: 59
Period size: 16 Copynumber: 4.2 Consensus size: 16
330848 AAAATAATAT
* *
330858 ATAATATAAAAATAAA
1 ATAATATGAATATAAA
* *
330874 ATAAATACGATATAAAAAA
1 AT-AATATGA-AT-ATAAA
330893 ATAATATGAATATAAA
1 ATAATATGAATATAAA
*
330909 ATAATATG-ATTTAAA
1 ATAATATGAATATAAA
330924 ATA
1 ATA
330927 TGATATGATA
Statistics
Matches: 43, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
15 9 0.21
16 14 0.33
17 7 0.16
18 7 0.16
19 6 0.14
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.29
Consensus pattern (16 bp):
ATAATATGAATATAAA
Found at i:330971 original size:73 final size:72
Alignment explanation
Indices: 330841--331001 Score: 186
Period size: 73 Copynumber: 2.2 Consensus size: 72
330831 TAATTAAAAA
* * *
330841 ATGATTGAAAATAATATATAATATAAAAATAAAATAAATACGATATAAAAAAATAATATGAATAT
1 ATGATTTAAAATAATATATAATATAAAAATAAAATAAATAC-ATATAAAAAAATAATA-CAATAA
330906 AAA-ATAAT
64 AAATATAAT
* * *
330914 ATGATTTAAAAT-ATGATATGATATGAAAAAATAAAATAAATA-TTGTAAAAAAATAATACAATA
1 ATGATTTAAAATAAT-ATATAATAT--AAAAATAAAATAAATACATATAAAAAAATAATACAATA
330977 AAAATATAAT
63 AAAATATAAT
*
330987 ATGATATAAAA-AATA
1 ATGATTTAAAATAATA
331002 AAATAAATAA
Statistics
Matches: 76, Mismatches: 7, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
72 10 0.13
73 50 0.66
75 16 0.21
ACGTcount: A:0.63, C:0.01, G:0.06, T:0.29
Consensus pattern (72 bp):
ATGATTTAAAATAATATATAATATAAAAATAAAATAAATACATATAAAAAAATAATACAATAAAA
ATATAAT
Found at i:331479 original size:23 final size:24
Alignment explanation
Indices: 331433--331483 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
331423 GTATTTTTGA
* *
331433 TTATGTTATTTTTTCGTATTATGT
1 TTATGTTATTTTTTCATATCATGT
*
331457 TTATTTTATTTTTT-ATATCATGT
1 TTATGTTATTTTTTCATATCATGT
331480 TTAT
1 TTAT
331484 CTTTTTTGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
23 11 0.46
24 13 0.54
ACGTcount: A:0.20, C:0.04, G:0.08, T:0.69
Consensus pattern (24 bp):
TTATGTTATTTTTTCATATCATGT
Found at i:331607 original size:16 final size:17
Alignment explanation
Indices: 331567--331609 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
331557 TTAAATCATA
*
331567 TTATTTTATATTCGTGT
1 TTATTTTATATTCGTAT
*
331584 TATTTTTTATATT-GTAT
1 T-TATTTTATATTCGTAT
331601 TTATTTTAT
1 TTATTTTAT
331610 TTTTTTGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
16 7 0.32
17 5 0.23
18 10 0.45
ACGTcount: A:0.21, C:0.02, G:0.07, T:0.70
Consensus pattern (17 bp):
TTATTTTATATTCGTAT
Found at i:332612 original size:41 final size:42
Alignment explanation
Indices: 332555--332639 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 42
332545 AGATTTCATA
*
332555 ATAGTATACAACTGAGGGTGA-TAATATATATATATATATAT
1 ATAGTATAAAACTGAGGGTGAGTAATATATATATATATATAT
332596 ATAGTATAAAACTGAGGGTGATGTAATATATATATATATATAT
1 ATAGTATAAAACTGAGGGTGA-GTAATATATATATATATATAT
332639 A
1 A
332640 GTAATTGATC
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
41 20 0.49
43 21 0.51
ACGTcount: A:0.45, C:0.04, G:0.15, T:0.36
Consensus pattern (42 bp):
ATAGTATAAAACTGAGGGTGAGTAATATATATATATATATAT
Found at i:335425 original size:16 final size:17
Alignment explanation
Indices: 335406--335449 Score: 56
Period size: 16 Copynumber: 2.6 Consensus size: 17
335396 TCATTTTATG
*
335406 TTTAGATTATTTTGA-A
1 TTTAGATTATTTTCAGA
335422 TTTAGATT-TTTTCAGA
1 TTTAGATTATTTTCAGA
335438 TTTAGATCTATT
1 TTTAGAT-TATT
335450 CGGTTTCAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
15 5 0.21
16 16 0.67
17 1 0.04
18 2 0.08
ACGTcount: A:0.27, C:0.05, G:0.11, T:0.57
Consensus pattern (17 bp):
TTTAGATTATTTTCAGA
Found at i:339103 original size:20 final size:20
Alignment explanation
Indices: 339080--339121 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
339070 TGACTCTTTT
339080 GACCAAATTTGAATTAAGTC
1 GACCAAATTTGAATTAAGTC
* *
339100 GACCAAATTTGACTTAGGTC
1 GACCAAATTTGAATTAAGTC
339120 GA
1 GA
339122 TTTTTAAGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.29
Consensus pattern (20 bp):
GACCAAATTTGAATTAAGTC
Found at i:341177 original size:2 final size:2
Alignment explanation
Indices: 341170--341204 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
341160 ATTTTCAACT
341170 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
341205 CAACTTTTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:347189 original size:56 final size:56
Alignment explanation
Indices: 347122--347228 Score: 162
Period size: 56 Copynumber: 1.9 Consensus size: 56
347112 GTTGTAGATG
*
347122 TTGAATCTTCAATACTACAACCATC-TCTATAGATATTGAATACATTTATTATTACC
1 TTGAATCTTCAATACTACAACCA-CGTCTATAGATATCGAATACATTTATTATTACC
* * *
347178 TTGAATCTTCAATATTACAATCACGTCTATAGATATCGGATACATTTATTA
1 TTGAATCTTCAATACTACAACCACGTCTATAGATATCGAATACATTTATTA
347229 CTACTTTACT
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
55 1 0.02
56 45 0.98
ACGTcount: A:0.36, C:0.18, G:0.07, T:0.39
Consensus pattern (56 bp):
TTGAATCTTCAATACTACAACCACGTCTATAGATATCGAATACATTTATTATTACC
Found at i:351059 original size:2 final size:2
Alignment explanation
Indices: 351052--351097 Score: 74
Period size: 2 Copynumber: 22.5 Consensus size: 2
351042 GAATTATCAA
*
351052 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC ATC AC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC -TC TC TC
351095 TC T
1 TC T
351098 TAATTTTCGA
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
2 39 0.95
3 2 0.05
ACGTcount: A:0.04, C:0.48, G:0.00, T:0.48
Consensus pattern (2 bp):
TC
Found at i:351838 original size:2 final size:2
Alignment explanation
Indices: 351831--351873 Score: 68
Period size: 2 Copynumber: 21.5 Consensus size: 2
351821 CAAGTAAATT
* *
351831 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG GG AG AA AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
351873 A
1 A
351874 CTCACATGGG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:358545 original size:20 final size:18
Alignment explanation
Indices: 358520--358558 Score: 51
Period size: 20 Copynumber: 2.1 Consensus size: 18
358510 ATATATTTGC
358520 ATCAAACTCATATTTAAAAA
1 ATCAAACTCA-A-TTAAAAA
*
358540 ATCAAATTCAATTAAAAA
1 ATCAAACTCAATTAAAAA
358558 A
1 A
358559 AAAGTATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 8 0.44
19 1 0.06
20 9 0.50
ACGTcount: A:0.59, C:0.13, G:0.00, T:0.28
Consensus pattern (18 bp):
ATCAAACTCAATTAAAAA
Done.