Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold279
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1516008
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.32
File 5 of 10
Found at i:686327 original size:22 final size:22
Alignment explanation
Indices: 686287--686329 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
686277 TAAGTCCAAT
686287 ATAGCTGGCCTTGAATCAGCAA
1 ATAGCTGGCCTTGAATCAGCAA
686309 ATAGCTGGCCTTGAATCAGCA
1 ATAGCTGGCCTTGAATCAGCA
686330 CATTGACATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.23
Consensus pattern (22 bp):
ATAGCTGGCCTTGAATCAGCAA
Found at i:686461 original size:55 final size:55
Alignment explanation
Indices: 686314--686469 Score: 147
Period size: 61 Copynumber: 2.8 Consensus size: 55
686304 AGCAAATAGC
* * * ** *
686314 TGGCCTTGAATCAGCACATTGACATCATTTTTCTCATCTTTAAGCCCAATATCGT
1 TGGCCTTGAATCAGCATATTGGCATCCTTCATCTCATCTTTAAGCCCAATATCGA
* * * *
686369 TGGCCGTGAATCAACATATTGGCATCACTTTTCTCATCTTCATCTTTAAGTCCAATATTGA
1 TGGCCTTGAATCAGCATATTGGCATC-C---T-TCATC-TCATCTTTAAGCCCAATATCGA
686430 TGGCCTTGAATCAGCATATTGGCA-CCTTCA--TCATCTTTAA
1 TGGCCTTGAATCAGCATATTGGCATCCTTCATCTCATCTTTAA
686470 AACCCAATGA
Statistics
Matches: 83, Mismatches: 12, Indels: 15
0.75 0.11 0.14
Matches are distributed among these distances:
52 10 0.12
55 25 0.30
56 1 0.01
59 2 0.02
60 4 0.05
61 41 0.49
ACGTcount: A:0.26, C:0.24, G:0.13, T:0.37
Consensus pattern (55 bp):
TGGCCTTGAATCAGCATATTGGCATCCTTCATCTCATCTTTAAGCCCAATATCGA
Found at i:687226 original size:33 final size:33
Alignment explanation
Indices: 687189--687255 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
687179 TTCAACGATT
687189 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
687222 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
687255 T
1 T
687256 TCAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:687227 original size:13 final size:13
Alignment explanation
Indices: 687209--687233 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
687199 CATAAAATGT
687209 TGTATCGATACAA
1 TGTATCGATACAA
687222 TGTATCGATACA
1 TGTATCGATACA
687234 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:687314 original size:13 final size:13
Alignment explanation
Indices: 687296--687320 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
687286 ATCACTTAAA
687296 TGTATCGATACAT
1 TGTATCGATACAT
687309 TGTATCGATACA
1 TGTATCGATACA
687321 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:687385 original size:52 final size:52
Alignment explanation
Indices: 687329--687457 Score: 204
Period size: 52 Copynumber: 2.5 Consensus size: 52
687319 CACTGATCTT
* * * *
687329 TGTATCGATACATGTAAGCAAATTTGCCCAGATGTATCGATATATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
**
687381 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGCAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
687433 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
687458 TCATATTTCG
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 71 1.00
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:690729 original size:13 final size:13
Alignment explanation
Indices: 690711--690735 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
690701 CATAAAGTGT
690711 TGTATCGATACAA
1 TGTATCGATACAA
690724 TGTATCGATACA
1 TGTATCGATACA
690736 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:690729 original size:33 final size:33
Alignment explanation
Indices: 690691--690757 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
690681 TTCAACAATT
690691 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
*** *
690724 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
690757 T
1 T
690758 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Found at i:690816 original size:13 final size:13
Alignment explanation
Indices: 690798--690822 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
690788 ATCACTTAAA
690798 TGTATCGATACAT
1 TGTATCGATACAT
690811 TGTATCGATACA
1 TGTATCGATACA
690823 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:690887 original size:52 final size:52
Alignment explanation
Indices: 690831--691059 Score: 431
Period size: 52 Copynumber: 4.4 Consensus size: 52
690821 CACTGATCTT
*
690831 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
690883 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
690935 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
690987 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
691039 TGTATCAATACATGCAGGCAA
1 TGTATCGATACATGCAGGCAA
691060 CTTTCCATAT
Statistics
Matches: 174, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 174 1.00
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:697342 original size:13 final size:13
Alignment explanation
Indices: 697322--697355 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
697312 AAAACAACAC
697322 AAAA-AAAAAGAA
1 AAAAGAAAAAGAA
*
697334 AAAAGAAAAAGAG
1 AAAAGAAAAAGAA
697347 AAAAGAAAA
1 AAAAGAAAA
697356 GAACCTGCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 4 0.20
13 16 0.80
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (13 bp):
AAAAGAAAAAGAA
Found at i:698435 original size:61 final size:62
Alignment explanation
Indices: 698328--698534 Score: 298
Period size: 61 Copynumber: 3.4 Consensus size: 62
698318 AACCTTTTAT
* * *
698328 CCTTTC-AGTCCTCAAAGAGCAGGAAGCCTTCT-CTTTTCAAATCCCACACAAGTTGGTGGCA
1 CCTTTCTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTT-AAAGCCCACACAAGTTGGTGGCA
* *
698389 CCTTTC-AGTCCTCAAAGAGTAGGATGCCTTTTCCTTTTATAGCCCACACAAGTTGGTGGCA
1 CCTTTCTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* *
698450 -CTTTCTAGTCCTCAAAGAGCAAGATGCCTTTTCCTTTTAAAGCCCACACAAGTTTGTGGCA
1 CCTTTCTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
*
698511 CC-TTCTAGTCCCCAAAGAGCAGGA
1 CCTTTCTAGTCCTCAAAGAGCAGGA
698535 CGCACTTTAT
Statistics
Matches: 132, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
60 5 0.04
61 121 0.92
62 6 0.05
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (62 bp):
CCTTTCTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
Found at i:698582 original size:41 final size:42
Alignment explanation
Indices: 698523--698644 Score: 176
Period size: 41 Copynumber: 2.9 Consensus size: 42
698513 TTCTAGTCCC
*
698523 CAAAGAGCAGGACGCACTTTATTTCCTTTTC-CCTTTGTCTT
1 CAAAGAGCAGGACACACTTTATTTCCTTTTCTCCTTTGTCTT
*
698564 CAAAGAGTAGGACACACTTTATTTCCTTTTCTCCTTTGTCTT
1 CAAAGAGCAGGACACACTTTATTTCCTTTTCTCCTTTGTCTT
* *
698606 CAAAAAGCAGGACACA-TTTAATTTCCTTCTTTTCCTTTG
1 CAAAGAGCAGGACACACTTT-ATTTCCTT-TTCTCCTTTG
698645 CTCTCAACAA
Statistics
Matches: 73, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
41 32 0.44
42 32 0.44
43 9 0.12
ACGTcount: A:0.23, C:0.25, G:0.12, T:0.40
Consensus pattern (42 bp):
CAAAGAGCAGGACACACTTTATTTCCTTTTCTCCTTTGTCTT
Found at i:698618 original size:42 final size:42
Alignment explanation
Indices: 698523--698684 Score: 170
Period size: 42 Copynumber: 3.9 Consensus size: 42
698513 TTCTAGTCCC
* *
698523 CAAAGAGCAGGACGCACTTTATTTCCTTTTC-CCTTTGTCTT
1 CAAAAAGCAGGACACACTTTATTTCCTTTTCTCCTTTGTCTT
* *
698564 CAAAGAGTAGGACACACTTTATTTCCTTTTCTCCTTTGTCTT
1 CAAAAAGCAGGACACACTTTATTTCCTTTTCTCCTTTGTCTT
*
698606 CAAAAAGCAGGACACA-TTTAATTTCCTTCTTTTCCTTTG-CTCT
1 CAAAAAGCAGGACACACTTT-ATTTCCTT-TTCTCCTTTGTCT-T
* ** * *
698649 CAACAAGCCA-GACGTATTTTATTTCCTTTTTTCCTT
1 CAAAAAG-CAGGACACACTTTATTTCCTTTTCTCCTT
698685 CATCCTCGAA
Statistics
Matches: 107, Mismatches: 8, Indels: 11
0.85 0.06 0.09
Matches are distributed among these distances:
41 32 0.30
42 42 0.39
43 28 0.26
44 5 0.05
ACGTcount: A:0.22, C:0.25, G:0.11, T:0.41
Consensus pattern (42 bp):
CAAAAAGCAGGACACACTTTATTTCCTTTTCTCCTTTGTCTT
Found at i:705445 original size:79 final size:79
Alignment explanation
Indices: 705301--705458 Score: 237
Period size: 79 Copynumber: 2.0 Consensus size: 79
705291 GGGCTTGAGG
* **
705301 ATCCCTAATTATGGAAAATTGGTGTTCTGAAAATAAAATCGGGGTTAGAGTATCCCCTTGGAAAT
1 ATCCCTAATTATAGAAAATTGGTGTTCTGAAAATAAAATCGGGGTTAGAGTATCCCCTTAAAAAT
*
705366 AATAGGGTTGGAGT
66 AACAGGGTTGGAGT
* *
705380 ATCCCTAATTATAGAAAATTGGTGTTTTGAAAATAAAATCGGGGTTGGAGTAT-CCCTTCAAAAA
1 ATCCCTAATTATAGAAAATTGGTGTTCTGAAAATAAAATCGGGGTTAGAGTATCCCCTT-AAAAA
*
705444 TAACGGGGTTGGAGT
65 TAACAGGGTTGGAGT
705459 TACCCCATGA
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
78 5 0.07
79 66 0.93
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.30
Consensus pattern (79 bp):
ATCCCTAATTATAGAAAATTGGTGTTCTGAAAATAAAATCGGGGTTAGAGTATCCCCTTAAAAAT
AACAGGGTTGGAGT
Found at i:705453 original size:28 final size:27
Alignment explanation
Indices: 705419--705491 Score: 101
Period size: 28 Copynumber: 2.6 Consensus size: 27
705409 AAAATAAAAT
*
705419 CGGGGTTGGAGTATCCCTTCAAAAATAA
1 CGGGGTTGGAGTATCCCAT-AAAAATAA
* *
705447 CGGGGTTGGAGTTACCCCATGAAAATAA
1 CGGGGTTGGAG-TATCCCATAAAAATAA
705475 CGGGGTTGGAGTATCCC
1 CGGGGTTGGAGTATCCC
705492 CGATTGTGAG
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
27 5 0.12
28 29 0.73
29 6 0.15
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.23
Consensus pattern (27 bp):
CGGGGTTGGAGTATCCCATAAAAATAA
Found at i:705534 original size:79 final size:78
Alignment explanation
Indices: 705449--705729 Score: 422
Period size: 79 Copynumber: 3.6 Consensus size: 78
705439 AAAAATAACG
705449 GGGTTGGAGT-TACCCCAT-GAAAATAACGGGGTTGGAGTATCCCCGATTGTGAGAAATCAATAT
1 GGGTTGGAGTAT-CCCC-TCGAAAATAACGGGGTTGGAGTATCCCCGATTGTGAGAAATCAATAT
*
705512 TTTAGGAATAAAGCC
64 TTTAGAAATAAAGCC
* * *
705527 AGGGTTGGAGTATCCCCTCGGAAATAACGAGGTTGGAGTATCCCCGATTATGAGAAATCAATATT
1 -GGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATT
*
705592 TTAGAAATAAAACC
65 TTAGAAATAAAGCC
*
705606 GAGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATTCCCGATTGTGAGAAATCAATATT
1 G-GGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATT
705671 TTAGAAATAAAGCC
65 TTAGAAATAAAGCC
** *
705685 GGGGTTGGAGTATCGTCTCGGAAATAACGGGGTTGGAGTATCCCC
1 -GGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCC
705730 AATGATTAAC
Statistics
Matches: 184, Mismatches: 14, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
78 2 0.01
79 180 0.98
80 2 0.01
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.26
Consensus pattern (78 bp):
GGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTT
TAGAAATAAAGCC
Found at i:705889 original size:51 final size:51
Alignment explanation
Indices: 705739--705974 Score: 296
Period size: 51 Copynumber: 4.6 Consensus size: 51
705729 CAATGATTAA
**
705739 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTGGAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTAAAAATAAAAT
** * * * * *
705790 AAGAGTTAGAGTAT-CCCAATTAT-AGAAAATTGGTGTTTTGAAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATTGTGA-AAAATTGGTGTTTTAAAAATAAAAT
* * *
705840 TGGGGTTCGAGTATCCCCGATTGTGAAAAATTGGTGTTTCAAAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTAAAAATAAAAT
* * * *
705891 CGGAGTTGGAGTATCCCCGATTGTGAAAAATTAGTGTTTTAGAAATAAAAC
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTAAAAATAAAAT
*
705942 CGGGGTTGGAGTATCCCCGATTATGAAAAATTG
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTG
705975 AGAAACTTAA
Statistics
Matches: 157, Mismatches: 25, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
49 1 0.01
50 41 0.26
51 114 0.73
52 1 0.01
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.31
Consensus pattern (51 bp):
CGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTAAAAATAAAAT
Found at i:709047 original size:61 final size:60
Alignment explanation
Indices: 708945--709274 Score: 369
Period size: 61 Copynumber: 5.6 Consensus size: 60
708935 GACAAAGGAG
* * *
708945 AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGCGGGCTTT
1 AAAA-GAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTT
* *
709006 GAAAAGAAAAGGCGTCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTT
1 -AAAAGAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTT
* * * * *
709067 AAAATGAGAAGGCATCCTGCTCTTTGAGGACTGGGAAGTGCCACTAACTTGTGTGGGCTTT
1 AAAA-GAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTT
* * * *
709128 GAAAGGAGAAA-GCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT
1 -AAAAGA-AAAGGCGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTT
* * *
709189 ----G-AAAGGCGTCCTGCTCTATGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT
1 AAAAGAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTT
*
709244 -----AAAAGGCGTCCTACTCTTTGAGGACTA-AAAG
1 AAAAGAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAG
709275 GGTGAAAGGA
Statistics
Matches: 240, Mismatches: 23, Indels: 18
0.85 0.08 0.06
Matches are distributed among these distances:
54 6 0.03
55 71 0.30
56 1 0.00
60 4 0.02
61 149 0.62
62 9 0.04
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (60 bp):
AAAAGAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTT
Found at i:709381 original size:61 final size:56
Alignment explanation
Indices: 709292--709480 Score: 249
Period size: 55 Copynumber: 3.3 Consensus size: 56
709282 GGAAAGAGCG
*
709292 TCCTGCTCTTTGAGGACT-GAAGAGTGCCACCAACTTGTGTGGGCTTTGAAAGGAGAAAGCA
1 TCCTACTCTTTGAGGACTGGAA-AGTGCCACCAACTTGTGTGGGCTTTGAAA--AG---GCA
* * *
709353 TCCTACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGTTTTG-AAAGGCG
1 TCCTACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGGCA
* *
709408 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCCACTTGTGTGGGCTTT-AAAAGGCA
1 TCCTACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGGCA
709463 TCCTACTCTTTGAGGACT
1 TCCTACTCTTTGAGGACT
709481 AAAGGGTGAA
Statistics
Matches: 116, Mismatches: 10, Indels: 10
0.85 0.07 0.07
Matches are distributed among these distances:
55 68 0.59
58 2 0.02
60 2 0.02
61 41 0.35
62 3 0.03
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (56 bp):
TCCTACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGGCA
Found at i:709424 original size:156 final size:150
Alignment explanation
Indices: 709127--709425 Score: 440
Period size: 156 Copynumber: 2.0 Consensus size: 150
709117 GTGTGGGCTT
709127 TGAAAGGAGAAAGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAA
1 TGAAAGGAGAAAGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAA
* *
709192 AGGCGTCCTGCTCTATGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTA
66 AGGCATCCTACTCTATGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTA
709257 CTCTTTGAGGACTAAAAGGG
131 CTCTTTGAGGACTAAAAGGG
* *
709277 TGAAAGGA-AAGAGCGTCCTGCTCTTTGAGGACT-GAAGAGTGCCACCAACTTGTGTGGGCTTTG
1 TGAAAGGAGAA-AGCATCCTGCTCTTTGAGGACTGGAA-AATGCCACCAACTTGTGTGGGCTTTG
* * *
709340 AAAGGAGAAAGCATCCTACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGTTTTGAAAG
64 -AA--AG---GCATCCTACTCTATGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAG
*
709405 GCGTCCTGCTCTTTGAGGACT
123 GCGTCCTACTCTTTGAGGACT
709426 GGAAAGTGCC
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
149 5 0.04
150 54 0.41
151 2 0.02
153 2 0.02
156 70 0.53
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (150 bp):
TGAAAGGAGAAAGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAA
AGGCATCCTACTCTATGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTA
CTCTTTGAGGACTAAAAGGG
Found at i:709446 original size:211 final size:210
Alignment explanation
Indices: 709081--709585 Score: 847
Period size: 211 Copynumber: 2.4 Consensus size: 210
709071 TGAGAAGGCA
* *
709081 TCCTGCTCTTTGAGGACTG-GGAAGTGCCACTAACTTGTGTGGGCTTTGAAAGGAGAAAGCATCC
1 TCCTGCTCTTTGAGGACTGAAG-AGTGCCACCAACTTGTGTGGGCTTTGAAAGGAGAAAGCATCC
709145 TGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTATGA
65 TGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTATGA
*
709210 GGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTACTCTTTGAGGACTAAAAG
130 GGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTACTCTTTGAGGACT-AAAG
709275 GGTGAAAGGAAAGAGCG
194 GGTGAAAGGAAAGAGCG
709292 TCCTGCTCTTTGAGGACTGAAGAGTGCCACCAACTTGTGTGGGCTTTGAAAGGAGAAAGCATCCT
1 TCCTGCTCTTTGAGGACTGAAGAGTGCCACCAACTTGTGTGGGCTTTGAAAGGAGAAAGCATCCT
* * *
709357 ACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGTTTTGAAAGGCGTCCTGCTCTTTGAG
66 GCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTATGAG
* *
709422 GACTGGAAAGTGCCACCCACTTGTGTGGGCTTTAAAAGGCATCCTACTCTTTGAGGACTAAAGGG
131 GACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTACTCTTTGAGGACTAAAGGG
*
709487 TGAAAGGAGAGAGCG
196 TGAAAGGAAAGAGCG
* *
709502 TCCTGCTCTTTGAGGACTAGAA-TGTGCCACCAACTTGTGTGGGCTTTAAAAGGA-AAAGGCATC
1 TCCTGCTCTTTGAGGACT-GAAGAGTGCCACCAACTTGTGTGGGCTTTGAAAGGAGAAA-GCATC
709565 CTGCTCTTTGAGGACT-GAAAA
64 CTGCTCTTTGAGGACTGGAAAA
709586 GTGAAAAGAG
Statistics
Matches: 279, Mismatches: 12, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
209 8 0.03
210 88 0.32
211 182 0.65
212 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.26
Consensus pattern (210 bp):
TCCTGCTCTTTGAGGACTGAAGAGTGCCACCAACTTGTGTGGGCTTTGAAAGGAGAAAGCATCCT
GCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTATGAG
GACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTACTCTTTGAGGACTAAAGGG
TGAAAGGAAAGAGCG
Found at i:710562 original size:1 final size:1
Alignment explanation
Indices: 710556--710640 Score: 71
Period size: 1 Copynumber: 85.0 Consensus size: 1
710546 AAACAGGTTC
* * * * * * * * *
710556 TTTTTTTTTGTTTTTCTTCTTTGTTTTGTTTTTTTTTTGTTTTTTTTATTTTTTTGTTTTTTTGT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* *
710621 TGTTTTTTGTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTT
710641 GAAAAAGAAT
Statistics
Matches: 62, Mismatches: 22, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
1 62 1.00
ACGTcount: A:0.01, C:0.02, G:0.09, T:0.87
Consensus pattern (1 bp):
T
Found at i:710597 original size:29 final size:28
Alignment explanation
Indices: 710556--710627 Score: 108
Period size: 28 Copynumber: 2.5 Consensus size: 28
710546 AAACAGGTTC
*
710556 TTTTTTTTTGTTTTTCTTCTTTGTTTTGT
1 TTTTTTTTTGTTTTTCTTATTT-TTTTGT
*
710585 TTTTTTTTTGTTTTTTTTATTTTTTTGT
1 TTTTTTTTTGTTTTTCTTATTTTTTTGT
*
710613 TTTTTTGTTGTTTTT
1 TTTTTTTTTGTTTTT
710628 TGTTTTTTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
28 20 0.50
29 20 0.50
ACGTcount: A:0.01, C:0.03, G:0.10, T:0.86
Consensus pattern (28 bp):
TTTTTTTTTGTTTTTCTTATTTTTTTGT
Found at i:710628 original size:29 final size:27
Alignment explanation
Indices: 710556--710639 Score: 105
Period size: 29 Copynumber: 3.0 Consensus size: 27
710546 AAACAGGTTC
* *
710556 TTTTTTTTTGTTTTTCTTCTTTGTTTTG
1 TTTTTTTTTGTTTTT-TTTTTTTTTTTG
*
710584 TTTTTTTTTTGTTTTTTTTATTTTTTTG
1 -TTTTTTTTTGTTTTTTTTTTTTTTTTG
710612 TTTTTTTGTTGTTTTTTGTTTTTTTTTT
1 TTTTTTT-TTGTTTTTT-TTTTTTTTTT
710640 TGAAAAAGAA
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
27 7 0.14
28 18 0.37
29 24 0.49
ACGTcount: A:0.01, C:0.02, G:0.10, T:0.87
Consensus pattern (27 bp):
TTTTTTTTTGTTTTTTTTTTTTTTTTG
Found at i:711347 original size:20 final size:20
Alignment explanation
Indices: 711303--711360 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
711293 ATTTCAACGA
***
711303 TTTGTATCGATACATAAAGT
1 TTTGTATCGATACATATTTT
*
711323 GTTGTATCGATACATATTTT
1 TTTGTATCGATACATATTTT
711343 TTTGTATCGATACA-ATTT
1 TTTGTATCGATACATATTT
711361 AAGCTACTGC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
19 4 0.12
20 29 0.88
ACGTcount: A:0.29, C:0.10, G:0.14, T:0.47
Consensus pattern (20 bp):
TTTGTATCGATACATATTTT
Found at i:711417 original size:13 final size:13
Alignment explanation
Indices: 711399--711426 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
711389 ATTACTCAAA
711399 TGTATCGATACAT
1 TGTATCGATACAT
711412 TGTATCGATACAT
1 TGTATCGATACAT
711425 TG
1 TG
711427 ATCTTTGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:711476 original size:52 final size:51
Alignment explanation
Indices: 711412--711562 Score: 230
Period size: 52 Copynumber: 2.9 Consensus size: 51
711402 ATCGATACAT
**
711412 TGTATCGATACATTGATCTTTGTATCGATACATGCAGGCAAATTTTCCCAGA
1 TGTATCGATACATT-ATCAATGTATCGATACATGCAGGCAAATTTTCCCAGA
* *
711464 TGTATCGATACATTATAAAATGTATCGATACATGCAGGCAAATTTGCCCAGA
1 TGTATCGATACATTAT-CAATGTATCGATACATGCAGGCAAATTTTCCCAGA
*
711516 TGTATCGATACACTATTCAATGTATCGATACATGCAGGCAAATTTTC
1 TGTATCGATACATTA-TCAATGTATCGATACATGCAGGCAAATTTTC
711563 ATATTTCGGG
Statistics
Matches: 90, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
51 2 0.02
52 87 0.97
53 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (51 bp):
TGTATCGATACATTATCAATGTATCGATACATGCAGGCAAATTTTCCCAGA
Found at i:723293 original size:19 final size:18
Alignment explanation
Indices: 723269--723331 Score: 73
Period size: 19 Copynumber: 3.7 Consensus size: 18
723259 AGTGATACAT
723269 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
723288 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
723301 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
723320 TGTATCGATACA
1 TGTATCGATACA
723332 TTGTATCGAT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 11 0.29
14 1 0.03
16 2 0.05
18 1 0.03
19 23 0.61
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:723303 original size:32 final size:32
Alignment explanation
Indices: 723262--723346 Score: 161
Period size: 32 Copynumber: 2.7 Consensus size: 32
723252 GCTTCGTAGT
723262 GATACATTGTATCGATACAAAACTTATGTATC
1 GATACATTGTATCGATACAAAACTTATGTATC
*
723294 GATACATTGTATCGATACAACACTTATGTATC
1 GATACATTGTATCGATACAAAACTTATGTATC
723326 GATACATTGTATCGATACAAA
1 GATACATTGTATCGATACAAA
723347 TCGTTGAAAT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
32 51 1.00
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.33
Consensus pattern (32 bp):
GATACATTGTATCGATACAAAACTTATGTATC
Found at i:723306 original size:13 final size:13
Alignment explanation
Indices: 723288--723344 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
723278 ACAAAACTTA
723288 TGTATCGATACAT
1 TGTATCGATACAT
723301 TGTATCGATACAACACTT
1 TGTATCGAT---ACA--T
723319 ATGTATCGATACAT
1 -TGTATCGATACAT
723333 TGTATCGATACA
1 TGTATCGATACA
723345 AATCGTTGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 21 0.55
14 1 0.03
16 6 0.16
18 1 0.03
19 9 0.24
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:730229 original size:79 final size:79
Alignment explanation
Indices: 730098--730265 Score: 255
Period size: 79 Copynumber: 2.1 Consensus size: 79
730088 ACAACGGGGC
* * * * *
730098 TGGAGGATCCCTGATTATGGAAAATTGGTGTTCTGAAAATAAAATCGGGGTTGGAGTATCCCCTT
1 TGGAGTATCCCTAATTATAGAAAATTGGTGTTCTGAAAATAAAATCAGGGTTGGAGTATCCCCTC
** *
730163 GGAAATAATAGGGT
66 AAAAATAACAGGGT
*
730177 TGGAGTATCCCTAATTATAGAAAATTGGTGTTTTGAAAATAAAATCAGGGTTGGAGTATCCCCTC
1 TGGAGTATCCCTAATTATAGAAAATTGGTGTTCTGAAAATAAAATCAGGGTTGGAGTATCCCCTC
730242 AAAAATAACAGGGT
66 AAAAATAACAGGGT
730256 TGGAGTATCC
1 TGGAGTATCC
730266 TCGTGAAAAT
Statistics
Matches: 80, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
79 80 1.00
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (79 bp):
TGGAGTATCCCTAATTATAGAAAATTGGTGTTCTGAAAATAAAATCAGGGTTGGAGTATCCCCTC
AAAAATAACAGGGT
Found at i:730296 original size:28 final size:29
Alignment explanation
Indices: 730222--730296 Score: 109
Period size: 28 Copynumber: 2.7 Consensus size: 29
730212 AAAATAAAAT
*
730222 CAGGGTTGGAGTATCC-CCTCAAAAATAA
1 CAGGGTTGGAGTATCCTCGTCAAAAATAA
*
730250 CAGGGTTGGAGTATCCTCGT-GAAAATAA
1 CAGGGTTGGAGTATCCTCGTCAAAAATAA
*
730278 CGGGGTTGGAGTATCCTCG
1 CAGGGTTGGAGTATCCTCG
730297 ATTGTGAGAA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
28 41 0.95
29 2 0.05
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (29 bp):
CAGGGTTGGAGTATCCTCGTCAAAAATAA
Found at i:730515 original size:78 final size:78
Alignment explanation
Indices: 730252--730534 Score: 406
Period size: 79 Copynumber: 3.6 Consensus size: 78
730242 AAAAATAACA
* *
730252 GGGTTGGAGTATCCTCGT-GAAAATAACGGGGTTGGAGTATCCTCGATTGTGAGAAATCAATATT
1 GGGTTGGAGTATCC-CCTCGAAAATAACGGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATT
* **
730316 TTAGGAATAAAGCCG
65 TTA-GAAAAAAATCG
* * * * *
730331 GGGTTGGAGTATCCCCTCGGAAATAACAGGGTTGAAGTATCCCCAATTATGAGAAATCAATATTT
1 GGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTT
730396 TAGAAATAAAATCG
66 TAGAAA-AAAATCG
* *
730410 GGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATTCCCGATTGTGAGAAATCAATATTT
1 GGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTT
730475 TAGAAAAAAATCG
66 TAGAAAAAAATCG
* *
730488 GGGTTGGAGTATCGCCTCGAAAATAACGGGGTTTGAGTATCCCCGAT
1 GGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGAT
730535 GATTAATGGG
Statistics
Matches: 183, Mismatches: 19, Indels: 5
0.88 0.09 0.02
Matches are distributed among these distances:
78 55 0.30
79 128 0.70
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (78 bp):
GGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTT
TAGAAAAAAATCG
Found at i:730606 original size:51 final size:50
Alignment explanation
Indices: 730549--730777 Score: 289
Period size: 51 Copynumber: 4.5 Consensus size: 50
730539 AATGGGGTTA
* **
730549 GAGTATCCTCGATTGTGAAAAATTGGTGTTTTGGAAATAAAATCAGAGTTG
1 GAGTATCCCCGATTGTGAAAAATTGGTGTTTTAAAAATAAAATC-GAGTTG
* * *
730600 GAGTATCCCCGATTAT-AGAAAATTGGTGTTTTGAAAATAAAACCGAGGTTG
1 GAGTATCCCCGATTGTGA-AAAATTGGTGTTTTAAAAATAAAATCGA-GTTG
*
730651 GAGTATCCCCGATTGTGAAAAATTGGTGTTTCAAAAATAAAATCGAAGTTG
1 GAGTATCCCCGATTGTGAAAAATTGGTGTTTTAAAAATAAAATCG-AGTTG
* * * * *
730702 GAGTATCCCCGATTGTGGAAAATTAGTGTTTTAGAAATAAAACCGGGGTTG
1 GAGTATCCCCGATTGTGAAAAATTGGTGTTTTAAAAATAAAATC-GAGTTG
*
730753 GAGTATCCCCGATTATGAAAAATTG
1 GAGTATCCCCGATTGTGAAAAATTG
730778 AGAAACTTAA
Statistics
Matches: 156, Mismatches: 17, Indels: 10
0.85 0.09 0.05
Matches are distributed among these distances:
50 3 0.02
51 150 0.96
52 3 0.02
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.30
Consensus pattern (50 bp):
GAGTATCCCCGATTGTGAAAAATTGGTGTTTTAAAAATAAAATCGAGTTG
Found at i:730668 original size:102 final size:102
Alignment explanation
Indices: 730544--730777 Score: 346
Period size: 102 Copynumber: 2.3 Consensus size: 102
730534 TGATTAATGG
* * ***
730544 GGTTAGAGTATCCTCGATTGTGAAAAATTGGTGTTTTGGAAATAAAATC-AGAGTTGGAGTATCC
1 GGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTCAAAAATAAAATCGA-AGTTGGAGTATCC
*
730608 CCGATTATAGAAAATTGGTGTTTT-GAAAATAAAACCGA
65 CCGATTATAGAAAATTAGTGTTTTAG-AAATAAAACCGA
730646 GGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTCAAAAATAAAATCGAAGTTGGAGTATCCC
1 GGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTCAAAAATAAAATCGAAGTTGGAGTATCCC
* * *
730711 CGATTGTGGAAAATTAGTGTTTTAGAAATAAAACCGG
66 CGATTATAGAAAATTAGTGTTTTAGAAATAAAACCGA
*
730748 GGTTGGAGTATCCCCGATTATGAAAAATTG
1 GGTTGGAGTATCCCCGATTGTGAAAAATTG
730778 AGAAACTTAA
Statistics
Matches: 120, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
102 118 0.98
103 2 0.02
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.30
Consensus pattern (102 bp):
GGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTCAAAAATAAAATCGAAGTTGGAGTATCCC
CGATTATAGAAAATTAGTGTTTTAGAAATAAAACCGA
Found at i:733124 original size:13 final size:13
Alignment explanation
Indices: 733106--733135 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
733096 GTGAACCCAG
733106 AATGTACCGATAC
1 AATGTACCGATAC
*
733119 AATGTATCGATAC
1 AATGTACCGATAC
733132 AATG
1 AATG
733136 AACAATGTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.27
Consensus pattern (13 bp):
AATGTACCGATAC
Found at i:733476 original size:13 final size:13
Alignment explanation
Indices: 733458--733483 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
733448 CACATTCATA
733458 TGTATCGATACAT
1 TGTATCGATACAT
733471 TGTATCGATACAT
1 TGTATCGATACAT
733484 GAAACTGGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:733548 original size:13 final size:13
Alignment explanation
Indices: 733530--733557 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
733520 GATACATGGC
733530 ACATTGTATCGAT
1 ACATTGTATCGAT
733543 ACATTGTATCGAT
1 ACATTGTATCGAT
733556 AC
1 AC
733558 TTGATAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (13 bp):
ACATTGTATCGAT
Found at i:733555 original size:33 final size:33
Alignment explanation
Indices: 733513--733581 Score: 93
Period size: 33 Copynumber: 2.1 Consensus size: 33
733503 CTACCACTGT
* * *
733513 TTGTATCGATACATGGCACATTGTATCGATACA
1 TTGTATCGATACATGACAAATTGTATCGATAAA
* *
733546 TTGTATCGATACTTGATAAATTGTATCGATAAA
1 TTGTATCGATACATGACAAATTGTATCGATAAA
733579 TTG
1 TTG
733582 CTTCAAACGG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.32, C:0.13, G:0.17, T:0.38
Consensus pattern (33 bp):
TTGTATCGATACATGACAAATTGTATCGATAAA
Found at i:736512 original size:77 final size:77
Alignment explanation
Indices: 736351--736550 Score: 240
Period size: 78 Copynumber: 2.6 Consensus size: 77
736341 CAAAACACTG
* * * * * * *
736351 ATTTTCCACCATCGGGGATACTCCAACCCTGTTATTTCCGTGGTGATACTCTAACCCCGGCTTTA
1 ATTTTCCACAATC-GGGATACTCTAACCCTGTTATTTTCGAGG-GAAACTATAACCCCGGCCTTA
*
736416 TTTCTAAAATATCG
64 TTTCTAAAATATCA
*
736430 ATTTTCCACAATCGGGATACTCTAACCCTGTTATTTTCGAGGGAAAAGTATAA-CCCGGCCTTAT
1 ATTTTCCACAATCGGGATACTCTAACCCTGTTATTTTCGAGGG-AAACTATAACCCCGGCCTTAT
736494 TTCTAAAATATCA
65 TTCTAAAATATCA
* * **
736507 ATTTTCTACAATTGGGGATACTCTAACCCCATTATTTTCGAGGG
1 ATTTTCCACAA-TCGGGATACTCTAACCCTGTTATTTTCGAGGG
736551 GACACTCCAA
Statistics
Matches: 106, Mismatches: 13, Indels: 5
0.85 0.10 0.04
Matches are distributed among these distances:
77 33 0.31
78 61 0.58
79 12 0.11
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.34
Consensus pattern (77 bp):
ATTTTCCACAATCGGGATACTCTAACCCTGTTATTTTCGAGGGAAACTATAACCCCGGCCTTATT
TCTAAAATATCA
Found at i:736801 original size:79 final size:78
Alignment explanation
Indices: 736332--736786 Score: 285
Period size: 79 Copynumber: 5.8 Consensus size: 78
736322 TCATCGATGT
* * ** ** * *
736332 TTTTATTTCCAAAACA-CTGATTTTCCACCATCGGGGATACTCCAACCCTGTTATTTCCGTGGTG
1 TTTTATTTCCAAAACATC-AATTTTCCACAATTAGGGATACTCCAACCCCATTATTTCTGAGG-G
* *
736396 ATACTCTAACCCCGG
64 ATACTCCAACCCCGA
* * * * * * **
736411 CTTTATTTCTAAAATATCGATTTTCCACAA-TCGGGATACTCTAACCCTGTTATTT-TCGAGGGA
1 TTTTATTTCCAAAACATCAATTTTCCACAATTAGGGATACTCCAACCCCATTATTTCT-GAGGG-
* * ** *
736474 AAAGTATAA-CCCGG
64 ATACTCCAACCCCGA
** * * * * *
736488 CCTTATTTCTAAAATATCAATTTTCTACAATTGGGGATACTCTAACCCCATTATTT-TCGAGGGG
1 TTTTATTTCCAAAACATCAATTTTCCACAATTAGGGATACTCCAACCCCATTATTTCT-GA-GGG
* *
736552 ACACTCCAACCCTGA
64 ATACTCCAACCCCGA
* * * * * * *
736567 TTTTATTTCCGACACACCCATTTTCCATAATCAGGGATACTCCAACCCCATTATTTCCGACGGGA
1 TTTTATTTCCAAAACATCAATTTTCCACAATTAGGGATACTCCAACCCCATTATTTCTGA-GGGA
** *
736632 TACTCTGA-CCCTA
65 TACTCCAACCCCGA
* * ** * * * * **
736645 GCTTTATTTCTAAAACATTGATTTTCCATAA-TCGGATATACTCTAACCCCATTATTTCTGAAAA
1 -TTTTATTTCCAAAACATCAATTTTCCACAATTAGG-GATACTCCAACCCCATTATTTCTG-AGG
736709 GATACTCCAACCCCGA
63 GATACTCCAACCCCGA
* *
736725 TTTTATTTCCAAAACATCAATTTTCCACCATTAGGGATACCCCAACCCCATTATTTCTGAGG
1 TTTTATTTCCAAAACATCAATTTTCCACAATTAGGGATACTCCAACCCCATTATTTCTGAGG
736787 CGGTACTTCC
Statistics
Matches: 291, Mismatches: 73, Indels: 25
0.75 0.19 0.06
Matches are distributed among these distances:
77 33 0.11
78 68 0.23
79 181 0.62
80 9 0.03
ACGTcount: A:0.28, C:0.27, G:0.12, T:0.33
Consensus pattern (78 bp):
TTTTATTTCCAAAACATCAATTTTCCACAATTAGGGATACTCCAACCCCATTATTTCTGAGGGAT
ACTCCAACCCCGA
Found at i:736815 original size:158 final size:158
Alignment explanation
Indices: 736524--736817 Score: 351
Period size: 158 Copynumber: 1.9 Consensus size: 158
736514 ACAATTGGGG
*** * * * *
736524 ATACTCTAACCCCATTATTTTCGAGGGGACACTCCAACCCTGATTTTATTTCCGACACACCCATT
1 ATACTCTAACCCCATTATTTTCGAAAAGACACTCCAACCCCGATTTTATTTCCAAAACACCAATT
* * * * **
736589 TTCCATAATCAGGGATACTCCAACCCCATTATTTCCGACGGGATACTCTGACCCTAGCTTTATTT
66 TTCCACAATCAGGGATACCCCAACCCCATTATTTCCGACGGGATACTCTCACCCCAGCTTTACCT
736654 CTAAAACATTGATTTTCCATAATCGGAT
131 CTAAAACATTGATTTTCCATAATCGGAT
* *
736682 ATACTCTAACCCCATTA-TTTCTGAAAAGATACTCCAACCCCGATTTTATTTCCAAAACATCAAT
1 ATACTCTAACCCCATTATTTTC-GAAAAGACACTCCAACCCCGATTTTATTTCCAAAACACCAAT
* * * * **
736746 TTTCCACCATTAGGGATACCCCAACCCCATTATTTCTGA-GGCGGTACT-TCCACCCCATTTTTA
65 TTTCCACAATCAGGGATACCCCAACCCCATTATTTCCGACGG-GATACTCT-CACCCCAGCTTTA
736809 CCTCTAAAA
128 CCTCTAAAA
736818 TATTAAATTT
Statistics
Matches: 112, Mismatches: 21, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
157 7 0.06
158 105 0.94
ACGTcount: A:0.29, C:0.30, G:0.10, T:0.32
Consensus pattern (158 bp):
ATACTCTAACCCCATTATTTTCGAAAAGACACTCCAACCCCGATTTTATTTCCAAAACACCAATT
TTCCACAATCAGGGATACCCCAACCCCATTATTTCCGACGGGATACTCTCACCCCAGCTTTACCT
CTAAAACATTGATTTTCCATAATCGGAT
Found at i:738217 original size:19 final size:19
Alignment explanation
Indices: 738181--738231 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 19
738171 CAACTGAATA
738181 TTTCTTTTCTCTTT-GTTTCTT
1 TTTCTTTT-T-TTTGGTTT-TT
738202 TTT-TTTTTTTTGGTTTTT
1 TTTCTTTTTTTTGGTTTTT
738220 TTTCTTTTTTTT
1 TTTCTTTTTTTT
738232 TTGAAAAATC
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
18 8 0.29
19 13 0.46
20 4 0.14
21 3 0.11
ACGTcount: A:0.00, C:0.10, G:0.06, T:0.84
Consensus pattern (19 bp):
TTTCTTTTTTTTGGTTTTT
Found at i:742402 original size:376 final size:375
Alignment explanation
Indices: 741685--742452 Score: 1189
Period size: 376 Copynumber: 2.0 Consensus size: 375
741675 ATCAAATTAT
* * * * *
741685 CCCTAAAGCTTACCATTGACACTAAGGCACCCGGTAACTTTAGAAGGCTAACTTTAAGAAAAATT
1 CCCT-AAGTTTACCATTGACACTAAGGCACCCAGCAACTTTAAAAGGCTAACTTTAAAAAAAATT
* * * * * * *
741750 ACGAAAATATCCTTAGAGGATACTTTTCACATAAAAGTACCCGGTACCCCTAAAATGGCTCGAAG
65 ACAAAAACACCCTTAGAGGATACTCTTCACATAAAAGTACCCAGTACCCCTAAAAGGGCTCAAAG
*
741815 AAGGTTTAAAAAGGATGAATCTATCCTACATGTGCACCTTCGGTATAAAAGTGACAACTTAGGAC
130 AAGGTTTAAAAAGGATGAACCTATCCTACATGTGCACCTTCGGTATAAAAGTGACAACTTAGGAC
*
741880 TCGATTCAAGAAAAATATGAAAATGCCCCTAGGGGATACCTTCGACGTAAAAGTACCTGAACCTC
195 TCGATTCAAGAAAAATATGAAAATGCCCCTAGGGGATACCTTCGACGTAAAAGTACCTGAACCCC
*
741945 TAAAAGACTTAAAAAGGATTTTAAAAAGGATGAACCTATCCTAAATATCTACCTTCGGCATAAAA
260 TAAAAGACTTAAAAAGGATTTTAAAAAGGATGAACCTATCCTAAATATCTACATTCGGCATAAAA
* *
742010 GTGAAACCGGTGATTTTGTAAGACTAGGTTTCAGAGAAAAGGCTAAAATAC
325 GCGAAACCGATGATTTTGTAAGACTAGGTTTCAGAGAAAAGGCTAAAATAC
*
742061 CCCTAGAGTTTACCATTGACACTAAGGCACTCAGCAACTTTAAAAGGCTAACTTTAAAAAAAATT
1 CCCTA-AGTTTACCATTGACACTAAGGCACCCAGCAACTTTAAAAGGCTAACTTTAAAAAAAATT
742126 ACAAAAACACCCTTAGAGGATAC-CTTCACATAAAAGTACCCAGTACCCCTAAAAGGGCTCAAAG
65 ACAAAAACACCCTTAGAGGATACTCTTCACATAAAAGTACCCAGTACCCCTAAAAGGGCTCAAAG
* * *
742190 AAGGTTTAAAAAGGATGACCCTATCCTTCATGTGCACCTTCGGTATAAAAGTGGCAACTTAGGAC
130 AAGGTTTAAAAAGGATGAACCTATCCTACATGTGCACCTTCGGTATAAAAGTGACAACTTAGGAC
* * * *
742255 TTGATTCAAGAAAAATTATGAAAATTCCCCTAGGGGATACCTTTGACTTAAAAGTA-CTCGAACC
195 TCGATTCAAGAAAAA-TATGAAAATGCCCCTAGGGGATACCTTCGACGTAAAAGTACCT-GAACC
*
742319 CCTAAAAGACTTAAAAAGGATTTTAAAAAGGATGAACCTATCCTAAATATTTACATTCGGCATAA
258 CCTAAAAGACTTAAAAAGGATTTTAAAAAGGATGAACCTATCCTAAATATCTACATTCGGCATAA
* * * * *
742384 AAGCGGACCCGATGATTTTGTAGGACTAGGTTTCGGAGATAAGGCTAAAATAC
323 AAGCGAAACCGATGATTTTGTAAGACTAGGTTTCAGAGAAAAGGCTAAAATAC
*
742437 CCCGAAGGTTTACCAT
1 CCCTAA-GTTTACCAT
742453 CGACCTAGTA
Statistics
Matches: 356, Mismatches: 32, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
375 116 0.33
376 240 0.67
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.25
Consensus pattern (375 bp):
CCCTAAGTTTACCATTGACACTAAGGCACCCAGCAACTTTAAAAGGCTAACTTTAAAAAAAATTA
CAAAAACACCCTTAGAGGATACTCTTCACATAAAAGTACCCAGTACCCCTAAAAGGGCTCAAAGA
AGGTTTAAAAAGGATGAACCTATCCTACATGTGCACCTTCGGTATAAAAGTGACAACTTAGGACT
CGATTCAAGAAAAATATGAAAATGCCCCTAGGGGATACCTTCGACGTAAAAGTACCTGAACCCCT
AAAAGACTTAAAAAGGATTTTAAAAAGGATGAACCTATCCTAAATATCTACATTCGGCATAAAAG
CGAAACCGATGATTTTGTAAGACTAGGTTTCAGAGAAAAGGCTAAAATAC
Found at i:743376 original size:167 final size:166
Alignment explanation
Indices: 743186--743642 Score: 494
Period size: 167 Copynumber: 2.8 Consensus size: 166
743176 AGAATCCTTT
* ** *
743186 TATTTTCAAAATACGGAGTTTTCTTCTCCATAAAAT-TTTTCGGGAGGATTTTAATCAATTTAAA
1 TATTTTCAAAATACGGAGTTTTCTACTCCAT-AAATGTTTTCGGGAGGATTTTTCTTAATTTAAA
*
743250 ATTTCTAAAATTTATCAAATATTATAATTTAATTCATATTAAATCAGTTTTCAAAAATTCATTCA
65 ATTTTTAAAATTTATCAAATATTATAATTTAATTCATATTAAATCAGTTTTCAAAAATTCATT-A
* **
743315 AT-TTCATGATTTTTTGAATTTTTTCCTTTAAATT-TTCC
129 ATGTTCATGA-GTTTTGAATTTTTTCCTCAAAATTCTT-C
* ** * * * * **
743353 TGTTTTTGAAATGCGGAGTTTTCTACTCCGTAAATGTTTTCGGGAGAATTTTTCTTAGTTTTTAA
1 TATTTTCAAAATACGGAGTTTTCTACTCCATAAATGTTTTCGGGAGGATTTTTCTTAATTTAAAA
** * * * **
743418 TTTTTAAAATTTAGAAAATATTATTAA-ATACTTCATATTAAATCAGTTTTCAAAAATTAATTTG
66 TTTTTAAAATTTATCAAATATTA-TAATTTAATTCATATTAAATCAGTTTTCAAAAATTCATTAA
*
743482 TGTTCATTAGTTTTGAATTTTTTCCTCAAAATTCTTC
130 TGTTCATGAGTTTTGAATTTTTTCCTCAAAATTCTTC
* ** * * *
743519 TATTTTCAAAAAACAAAGTTTTCTACTCCATAAATGTTTGCGGGGGGATTTTTCTTGATTTAAAA
1 TATTTTCAAAATACGGAGTTTTCTACTCCATAAATGTTTTCGGGAGGATTTTTCTTAATTTAAAA
* * * * *
743584 TTTTTAAAATTTATCTAATATTTTTATTAAATTC-CATTAAATCAGTTTTTC-AAAATTCA
66 TTTTTAAAATTTATCAAATATTATAATTTAATTCATATTAAATCAG-TTTTCAAAAATTCA
743643 ATTTATTTCT
Statistics
Matches: 234, Mismatches: 50, Indels: 14
0.79 0.17 0.05
Matches are distributed among these distances:
165 19 0.08
166 105 0.45
167 107 0.46
168 3 0.01
ACGTcount: A:0.33, C:0.11, G:0.09, T:0.47
Consensus pattern (166 bp):
TATTTTCAAAATACGGAGTTTTCTACTCCATAAATGTTTTCGGGAGGATTTTTCTTAATTTAAAA
TTTTTAAAATTTATCAAATATTATAATTTAATTCATATTAAATCAGTTTTCAAAAATTCATTAAT
GTTCATGAGTTTTGAATTTTTTCCTCAAAATTCTTC
Found at i:743636 original size:166 final size:165
Alignment explanation
Indices: 743186--743651 Score: 498
Period size: 166 Copynumber: 2.8 Consensus size: 165
743176 AGAATCCTTT
* *
743186 TATTTTCAAAATACGGAGTTTTCTTCTCCATAAAAT-TTTTCGGGAGGATTTTAATC-AATTTAA
1 TATTTTCAAAATACGGAGTTTTCTACTCCAT-AAATGTTTTCGGGAGGATTTT--TCTTATTTAA
* * * *
743249 AATTTCTAAAATTTATCAAATATTATAATTTAATTCATATTAAATCAGTTTTCAAAAATTCATTC
63 AATTTTTAAAATTTATCAAATATTATTATTAAATTCATATTAAATCAGTTTTCAAAAATTAATT-
* * **
743314 AATTTCATGATTTTTTGAATTTTTTCCTTTAAATTTTCC
127 TATTTCATGATGTTTTGAATTTTTTCCTCAAAATTTTCC
* ** * * * **
743353 TGTTTTTGAAATGCGGAGTTTTCTACTCCGTAAATGTTTTCGGGAGAATTTTTCTTAGTTTTTAA
1 TATTTTCAAAATACGGAGTTTTCTACTCCATAAATGTTTTCGGGAGGATTTTTCTTA-TTTAAAA
**
743418 TTTTTAAAATTTAGAAAATATTATTA--AATACTTCATATTAAATCAGTTTTCAAAAATTAATTT
65 TTTTTAAAATTTATCAAATATTATTATTAA-A-TTCATATTAAATCAGTTTTCAAAAATTAATTT
* *
743481 GTGTTCATTA-GTTTTGAATTTTTTCCTCAAAATTCTT-C
128 AT-TTCATGATGTTTTGAATTTTTTCCTCAAAATT-TTCC
* ** * *
743519 TATTTTCAAAAAACAAAGTTTTCTACTCCATAAATGTTTGCGGGGGGATTTTTCTTGATTTAAAA
1 TATTTTCAAAATACGGAGTTTTCTACTCCATAAATGTTTTCGGGAGGATTTTTCTT-ATTTAAAA
* * *
743584 TTTTTAAAATTTATCTAATATTTTTATTAAATTC-CATTAAATCAGTTTTTC-AAAATTCAATTT
65 TTTTTAAAATTTATCAAATATTATTATTAAATTCATATTAAATCAG-TTTTCAAAAATT-AATTT
743647 ATTTC
128 ATTTC
743652 TTTTTTTATT
Statistics
Matches: 246, Mismatches: 41, Indels: 26
0.79 0.13 0.08
Matches are distributed among these distances:
165 22 0.09
166 115 0.47
167 107 0.43
168 2 0.01
ACGTcount: A:0.33, C:0.11, G:0.09, T:0.47
Consensus pattern (165 bp):
TATTTTCAAAATACGGAGTTTTCTACTCCATAAATGTTTTCGGGAGGATTTTTCTTATTTAAAAT
TTTTAAAATTTATCAAATATTATTATTAAATTCATATTAAATCAGTTTTCAAAAATTAATTTATT
TCATGATGTTTTGAATTTTTTCCTCAAAATTTTCC
Found at i:746019 original size:155 final size:153
Alignment explanation
Indices: 745678--746161 Score: 455
Period size: 155 Copynumber: 3.1 Consensus size: 153
745668 TTTTCATCGC
* * ** * *
745678 AGGTATCCCCTAGGGGTATTTTTGTAATTTCTTAAAATTGAGTTGTAGGTTATCACCGGGTCTGC
1 AGGTATCCTCTAGGGGTATTTTTGTAATTTCTTAAAATCGAGTCCTAGGTTGTCACCAGGT-TGC
* * * * * *
745743 TTTTATGCTAAAAGTGGACTATTA-GAT-GTACATCCCATTTCTA-ATCTTTTTAAGTCATTT-A
65 GTTTATGCCAAAAGTGGGCAATTAGGATAGTTCATCCCATTTTTATATCTTTTTAAGTCATTTAA
* * *
745804 GGGTTACCCGGATACTTTTACGTC-A
130 GGG-TATCAGG-TACTTCTACGTCGA
* *
745829 AAGTATCCTCTAGGGGTATTTTTGTAATTTCTTAAAGTCGAGTCCTAGGTTGTCACCAGGTTTGC
1 AGGTATCCTCTAGGGGTATTTTTGTAATTTCTTAAAATCGAGTCCTAGGTTGTCACCAGG-TTGC
* * *
745894 GTTTATGCCAAAGGTGGGCAATTAGGATAGGTTCACCCCATTTTTATATCTTTTTTAAGTCCTTT
65 GTTTATGCCAAAAGTGGGCAATTAGGATA-GTTCATCCCATTTTTATATC-TTTTTAAGTCATTT
*
745959 AAGGGTATCAGGTGCTTCTACGTCGA
128 AAGGGTATCAGGTACTTCTACGTCGA
* * * * *
745985 AGGTAT-CTCCTA-GGGTATTTTTGTAATTTTTTAAAATCGAGTCTTAAGTTGTCACTAGG-TCC
1 AGGTATCCT-CTAGGGGTATTTTTGTAATTTCTTAAAATCGAGTCCTAGGTTGTCACCAGGTTGC
* * * * * *
746047 GTTTTAATGTCGAATGTGGGTATTTAGGATAAGTTCATCCCA-TTTTATAATCCTTTTTAAGTCG
65 G-TTT-ATGCCAAAAGTGGGCAATTAGGAT-AGTTCATCCCATTTTTAT-AT-CTTTTTAAGTCA
* * * *
746111 TTTAGGGGCATCGGGTACTTCTACGTTGA
125 TTTAAGGGTATCAGGTACTTCTACGTCGA
* *
746140 AGATATCCTCTAAGGGTATTTT
1 AGGTATCCTCTAGGGGTATTTT
746162 CATAATTTTT
Statistics
Matches: 276, Mismatches: 41, Indels: 27
0.80 0.12 0.08
Matches are distributed among these distances:
151 74 0.27
152 4 0.01
153 3 0.01
154 22 0.08
155 129 0.47
156 40 0.14
157 4 0.01
ACGTcount: A:0.24, C:0.16, G:0.21, T:0.40
Consensus pattern (153 bp):
AGGTATCCTCTAGGGGTATTTTTGTAATTTCTTAAAATCGAGTCCTAGGTTGTCACCAGGTTGCG
TTTATGCCAAAAGTGGGCAATTAGGATAGTTCATCCCATTTTTATATCTTTTTAAGTCATTTAAG
GGTATCAGGTACTTCTACGTCGA
Found at i:747101 original size:30 final size:30
Alignment explanation
Indices: 747063--747133 Score: 92
Period size: 29 Copynumber: 2.4 Consensus size: 30
747053 AAAGTCCATG
747063 ACTCTGTGGCACCCT-TTTTGTAAGCCCACA
1 ACTCTGTGGCACCCTCTTTT-TAAGCCCACA
* *
747093 ACTTTGTGGCA-TCTCTTTTTAAGCCCACA
1 ACTCTGTGGCACCCTCTTTTTAAGCCCACA
*
747122 ACTCCGTGGCAC
1 ACTCTGTGGCAC
747134 ATTTTTCTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
29 21 0.60
30 14 0.40
ACGTcount: A:0.20, C:0.32, G:0.17, T:0.31
Consensus pattern (30 bp):
ACTCTGTGGCACCCTCTTTTTAAGCCCACA
Found at i:747148 original size:33 final size:32
Alignment explanation
Indices: 747106--747274 Score: 159
Period size: 33 Copynumber: 5.3 Consensus size: 32
747096 TTGTGGCATC
*
747106 TCTTTTTAAGCCCACAACTCCGTGGCACATTTT
1 TCTTTTTAAGTCCACAACTCCGTGGCAC-TTTT
* * *
747139 TCTTTTTAAGTCTACAACTCCATGGCACTTGT
1 TCTTTTTAAGTCCACAACTCCGTGGCACTTTT
* ** *
747171 TCTTTTAAAGTCCACAACTTTGTGG-----TA
1 TCTTTTTAAGTCCACAACTCCGTGGCACTTTT
* *
747198 TCCTTTTAAGTCCACAACTCCATGGCACCTTTT
1 TCTTTTTAAGTCCACAACTCCGTGGCA-CTTTT
* *
747231 TCTTTTAAAGTCCACAACTCTGTGGCAACTTTTT
1 TCTTTTTAAGTCCACAACTCCGTGGC-AC-TTTT
747265 TCTTTTTAAG
1 TCTTTTTAAG
747275 CCCATACAAG
Statistics
Matches: 106, Mismatches: 22, Indels: 15
0.74 0.15 0.10
Matches are distributed among these distances:
27 20 0.19
32 23 0.22
33 49 0.46
34 14 0.13
ACGTcount: A:0.22, C:0.25, G:0.12, T:0.40
Consensus pattern (32 bp):
TCTTTTTAAGTCCACAACTCCGTGGCACTTTT
Found at i:747215 original size:59 final size:60
Alignment explanation
Indices: 747142--747255 Score: 194
Period size: 60 Copynumber: 1.9 Consensus size: 60
747132 ACATTTTTCT
* *
747142 TTTTAAGTCTACAACTCCATGGCA-CTTGTTCTTTTAAAGTCCACAACTTTGTGGTATCC
1 TTTTAAGTCCACAACTCCATGGCACCTTGTTCTTTTAAAGTCCACAACTCTGTGGTATCC
*
747201 TTTTAAGTCCACAACTCCATGGCACCTTTTTCTTTTAAAGTCCACAACTCTGTGG
1 TTTTAAGTCCACAACTCCATGGCACCTTGTTCTTTTAAAGTCCACAACTCTGTGG
747256 CAACTTTTTT
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
59 23 0.45
60 28 0.55
ACGTcount: A:0.24, C:0.25, G:0.13, T:0.38
Consensus pattern (60 bp):
TTTTAAGTCCACAACTCCATGGCACCTTGTTCTTTTAAAGTCCACAACTCTGTGGTATCC
Found at i:747231 original size:27 final size:27
Alignment explanation
Indices: 747140--747231 Score: 69
Period size: 27 Copynumber: 3.2 Consensus size: 27
747130 GCACATTTTT
*
747140 CTTTTTAAGTCTACAACTCCATGGCAC
1 CTTTTTAAGTCCACAACTCCATGGCAC
* *** *
747167 TTGTTCTTTTAAAGTCCACAACTTTGTGGTATC
1 -----CTTTTTAAGTCCACAACTCCATGGCA-C
747200 C-TTTTAAGTCCACAACTCCATGGCAC
1 CTTTTTAAGTCCACAACTCCATGGCAC
747226 CTTTTT
1 CTTTTT
747232 CTTTTAAAGT
Statistics
Matches: 47, Mismatches: 11, Indels: 9
0.70 0.16 0.13
Matches are distributed among these distances:
26 2 0.04
27 23 0.49
28 1 0.02
32 20 0.43
33 1 0.02
ACGTcount: A:0.23, C:0.26, G:0.12, T:0.39
Consensus pattern (27 bp):
CTTTTTAAGTCCACAACTCCATGGCAC
Found at i:747344 original size:31 final size:31
Alignment explanation
Indices: 747272--747502 Score: 218
Period size: 31 Copynumber: 7.4 Consensus size: 31
747262 TTTTCTTTTT
*
747272 AAGCCCATACAAGTTGGTGGCAACCCTTCTCTA
1 AAGCCCACACAAGTTGGTGGCAA-CCTT-TCTA
*
747305 AAGCCCACA-TAGATTGGTGGCAACCTTTCTA
1 AAGCCCACACAAG-TTGGTGGCAACCTTTCTA
* *
747336 AAGTCCACACAAGTTGGTGGCAATCTTTCTA
1 AAGCCCACACAAGTTGGTGGCAACCTTTCTA
* * * * *
747367 AAGCCCACACAAGTCGATGG-ACCCCTT-TG
1 AAGCCCACACAAGTTGGTGGCAACCTTTCTA
* * * *
747396 AAGCCCAAACAAGTTAGTAGCAACCCCTTC-A
1 AAGCCCACACAAGTTGGTGGCAA-CCTTTCTA
* *
747427 AAGCCCACATAAGTTGGTGGCAACCCTTCTA
1 AAGCCCACACAAGTTGGTGGCAACCTTTCTA
** *
747458 AAGCCCACACAAGTCAGTGGCAACCCTTCTTTA
1 AAGCCCACACAAGTTGGTGGCAA-CCTT-TCTA
747491 AAGCCCACACAA
1 AAGCCCACACAA
747503 TGTCATTGGC
Statistics
Matches: 162, Mismatches: 28, Indels: 16
0.79 0.14 0.08
Matches are distributed among these distances:
29 16 0.10
30 11 0.07
31 91 0.56
32 11 0.07
33 33 0.20
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.21
Consensus pattern (31 bp):
AAGCCCACACAAGTTGGTGGCAACCTTTCTA
Found at i:747448 original size:122 final size:126
Alignment explanation
Indices: 747272--747502 Score: 328
Period size: 122 Copynumber: 1.9 Consensus size: 126
747262 TTTTCTTTTT
* * * * *
747272 AAGCCCATACAAGTTGGTGGCAACCCTTCTCTAAAGCCCACATAGATTGGTGGCAACCTTTCTAA
1 AAGCCCAAACAAGTTAGTAGCAACCCCTCTCTAAAGCCCACATAGATTGGTGGCAACCCTTCTAA
* ** *
747337 AGTCCACACAAGTTGGTGGCAA-TCTT-TCTAAAGCCCACACAAGTCGATGGACCCCTTTG
66 AGCCCACACAAGTCAGTGGCAACCCTTCTCTAAAGCCCACACAAGTCGATGGACCCCTTTG
747396 AAGCCCAAACAAGTTAGTAGCAACCCCT-TC-AAAGCCCACATA-AGTTGGTGGCAACCCTTCTA
1 AAGCCCAAACAAGTTAGTAGCAACCCCTCTCTAAAGCCCACATAGA-TTGGTGGCAACCCTTCTA
*
747458 AAGCCCACACAAGTCAGTGGCAACCCTTCTTTAAAGCCCACACAA
65 AAGCCCACACAAGTCAGTGGCAACCCTTCTCTAAAGCCCACACAA
747503 TGTCATTGGC
Statistics
Matches: 94, Mismatches: 10, Indels: 6
0.85 0.09 0.05
Matches are distributed among these distances:
121 1 0.01
122 49 0.52
123 5 0.05
124 39 0.41
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.21
Consensus pattern (126 bp):
AAGCCCAAACAAGTTAGTAGCAACCCCTCTCTAAAGCCCACATAGATTGGTGGCAACCCTTCTAA
AGCCCACACAAGTCAGTGGCAACCCTTCTCTAAAGCCCACACAAGTCGATGGACCCCTTTG
Found at i:747735 original size:52 final size:52
Alignment explanation
Indices: 747553--748371 Score: 350
Period size: 52 Copynumber: 15.0 Consensus size: 52
747543 CATCTCTTTC
* * * * * * * **
747553 TAAGTCTAATGTCGTCGGCCTTTAATTAACACATTGACACCTTTTTTTTTCT
1 TAAGTCCAATGTCGTTGGCCTTGAATCAACATATTGGCACCTTTATCATTCT
* * ** * *
747605 TAAGTCTAATATCACTGGCCTTGAATCAGCATATTGG-ACCTTTGTCA-TCTT
1 TAAGTCCAATGTCGTTGGCCTTGAATCAACATATTGGCACCTTTATCATTC-T
* ** * *
747656 TAAGTCCAATATCACTGGCCTTGAATCAACATATTGGCATCTTTATCATTCC
1 TAAGTCCAATGTCGTTGGCCTTGAATCAACATATTGGCACCTTTATCATTCT
* * * *
747708 TAAGCCCAATGTCGTTGGCCTTAAATCAACATATTGGCATTCATTTTTC-TCATCT
1 TAAGTCCAATGTCGTTGGCCTTGAATCAACATATTGGCA--CCTTTATCAT--TCT
* * *
747763 TCAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTTGTCA-TCTT
1 T-AAGTCCAATGTCGTTGGCCTTGAATCAACATATTGGCACCTTTATCATTC-T
* * * *
747816 TAAGTCCAATATTGTTGGCTTTGAATCAGCATATTGGCACCTTTATCATTCTTCTCATCT
1 TAAGTCCAATGTCGTTGGCCTTGAATCAACATATTGGCACCTTTATCA------T--TCT
** * * * * *
747876 TCAAGTTTAATGTCGTTGGCCTTAAATCAGCACATTAGCACCTTTTTCA-TCTT
1 T-AAGTCCAATGTCGTTGGCCTTGAATCAACATATTGGCACCTTTATCATTC-T
** * * * **
747929 TAAACCCAATATCGCTGGCCTTGAATCAGCATATTGATACCTTTATCATTCTTCTCATTT
1 TAAGTCCAATGTCGTTGGCCTTGAATCAACATATTGGCACCTTTATCA----T-TC---T
* * * * *
747989 TCAAGTCCAATATCGCTGGCCTTGAATTAGCATATCGGCACCTTTATCATTCTT
1 T-AAGTCCAATGTCGTTGGCCTTGAATCAACATATTGGCACCTTTATCATTC-T
* * * * * * * *
748043 CTCATCTTCGAGTCCAATATCGCTGGTCTTTAATCAGCACATTGGCACATTTGTCA-TCTT
1 -T-A------AGTCCAATGTCGTTGGCCTTGAATCAACATATTGGCACCTTTATCATTC-T
* *
748103 TAAG-CTCAATATC-TCTGGCCTTGAATCAGCATATTGGCACCTTTATCATTCTTCTCATCTT
1 TAAGTC-CAATGTCGT-TGGCCTTGAATCAACATATTGGCACCTTTATCA------T--TC-T
* * * * *
748164 TAAG-CTCAATGTCGCTGACCTTGAATTAGCACATTGGCACCTTTATCATGT-T
1 TAAGTC-CAATGTCGTTGGCCTTGAATCAACATATTGGCACCTTTATCAT-TCT
* * * * *
748216 TAAGTCCAATGTCGCTAGCCTTGAATCAGCACATTGGCATTCTTT-TCA-TCTT
1 TAAGTCCAATGTCGTTGGCCTTGAATCAACATATTGGCA-CCTTTATCATTC-T
* * * * * * *
748268 TAAGTCTAATGTCGTTAGCCTTGAATCAGCACATTGGCACTTTTGTCATTTT
1 TAAGTCCAATGTCGTTGGCCTTGAATCAACATATTGGCACCTTTATCATTCT
* ** * *
748320 TAAG-CCAATATCACTGGCCTTGAATCAGCATATTAGCACCTTTATCATTCT
1 TAAGTCCAATGTCGTTGGCCTTGAATCAACATATTGGCACCTTTATCATTCT
748371 T
1 T
748372 CTCATCTTCA
Statistics
Matches: 610, Mismatches: 102, Indels: 111
0.74 0.12 0.13
Matches are distributed among these distances:
50 3 0.00
51 85 0.14
52 272 0.45
53 13 0.02
54 14 0.02
55 7 0.01
56 36 0.06
57 1 0.00
58 3 0.00
59 1 0.00
60 9 0.01
61 166 0.27
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.38
Consensus pattern (52 bp):
TAAGTCCAATGTCGTTGGCCTTGAATCAACATATTGGCACCTTTATCATTCT
Found at i:747904 original size:113 final size:113
Alignment explanation
Indices: 747649--748038 Score: 423
Period size: 113 Copynumber: 3.5 Consensus size: 113
747639 TGGACCTTTG
* * ** * * * * *
747649 TCATCTTTAAGTCCAATATCACTGGCCTTGAATCAACATATTGGCATCTTTATCAT-TCCTAAGC
1 TCATCTTCAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTTATCATCT-TTAAAC
* * * * * *
747713 CCAATGTCGTTGGCCTTAAATCAACATATTGGCA----T-TCATTTTTC
65 CCAATATCGCTGGCCTTGAATCAGCATATTGACACCTTTATCATTCTTC
* **
747757 TCATCTTCAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTTGTCATCTTTAAGTC
1 TCATCTTCAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTTATCATCTTTAAACC
* * * *
747822 CAATATTGTTGGCTTTGAATCAGCATATTGGCACCTTTATCATTCTTC
66 CAATATCGCTGGCCTTGAATCAGCATATTGACACCTTTATCATTCTTC
** * * *
747870 TCATCTTCAAGTTTAATGTCGTTGGCCTTAAATCAGCACATTAGCACCTTTTTCATCTTTAAACC
1 TCATCTTCAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTTATCATCTTTAAACC
*
747935 CAATATCGCTGGCCTTGAATCAGCATATTGATACCTTTATCATTCTTC
66 CAATATCGCTGGCCTTGAATCAGCATATTGACACCTTTATCATTCTTC
* * * * * *
747983 TCATTTTCAAGTCCAATATCGCTGGCCTTGAATTAGCATATCGGCACCTTTATCAT
1 TCATCTTCAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTTATCAT
748039 TCTTCTCATC
Statistics
Matches: 237, Mismatches: 39, Indels: 7
0.84 0.14 0.02
Matches are distributed among these distances:
108 81 0.34
109 1 0.00
112 1 0.00
113 154 0.65
ACGTcount: A:0.25, C:0.24, G:0.13, T:0.37
Consensus pattern (113 bp):
TCATCTTCAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTTATCATCTTTAAACC
CAATATCGCTGGCCTTGAATCAGCATATTGACACCTTTATCATTCTTC
Found at i:747906 original size:61 final size:61
Alignment explanation
Indices: 747831--748513 Score: 447
Period size: 61 Copynumber: 12.0 Consensus size: 61
747821 CCAATATTGT
* * * *
747831 TGGCTTTGAATCAGCATATTGGCACCTTTATCATTCTTCTCATCTTCAAGTTTAATGTCGT
1 TGGCCTTGAATCAGCACATTGGCACCTTTATCATTCTTCTCATCTTCAAGTCTAATGTCGC
* * * * * *
747892 TGGCCTTAAATCAGCACATTAGCACCTTTTTCA-TCTT-T-A-----AA-CCCAATATCGC
1 TGGCCTTGAATCAGCACATTGGCACCTTTATCATTCTTCTCATCTTCAAGTCTAATGTCGC
* ** * * *
747944 TGGCCTTGAATCAGCATATTGATACCTTTATCATTCTTCTCATTTTCAAGTCCAATATCGC
1 TGGCCTTGAATCAGCACATTGGCACCTTTATCATTCTTCTCATCTTCAAGTCTAATGTCGC
* * * * * *
748005 TGGCCTTGAATTAGCATATCGGCACCTTTATCATTCTTCTCATCTTCGAGTCCAATATCGC
1 TGGCCTTGAATCAGCACATTGGCACCTTTATCATTCTTCTCATCTTCAAGTCTAATGTCGC
* * * * * * *
748066 TGGTCTTTAATCAGCACATTGGCACATTTGTCA-TCTT-TAAGC-TCAA---T-A--TCTC
1 TGGCCTTGAATCAGCACATTGGCACCTTTATCATTCTTCTCATCTTCAAGTCTAATGTCGC
* *
748118 TGGCCTTGAATCAGCATATTGGCACCTTTATCATTCTTCTCATCTTTAAG-CTCAATGTCGC
1 TGGCCTTGAATCAGCACATTGGCACCTTTATCATTCTTCTCATCTTCAAGTCT-AATGTCGC
* * * *
748179 TGACCTTGAATTAGCACATTGGCACCTTTATCA------T-GT-TT-AAGTCCAATGTCGC
1 TGGCCTTGAATCAGCACATTGGCACCTTTATCATTCTTCTCATCTTCAAGTCTAATGTCGC
* * *
748231 TAGCCTTGAATCAGCACATTGGCA----T-TC--T-TT-TCATCTTTAAGTCTAATGTCGT
1 TGGCCTTGAATCAGCACATTGGCACCTTTATCATTCTTCTCATCTTCAAGTCTAATGTCGC
* * * * * *
748283 TAGCCTTGAATCAGCACATTGGCA-CTTT-T--GTCAT-T--T-TT-AAG-CCAATATCAC
1 TGGCCTTGAATCAGCACATTGGCACCTTTATCATTCTTCTCATCTTCAAGTCTAATGTCGC
* * * * *
748334 TGGCCTTGAATCAGCATATTAGCACCTTTATCATTCTTCTCATCTTCAAGCCTGATATCGC
1 TGGCCTTGAATCAGCACATTGGCACCTTTATCATTCTTCTCATCTTCAAGTCTAATGTCGC
* * * * * *
748395 TAGCCGTGAATCAGCATATTGGCACCTTTATTATTCTTCGCATCTTTAAGTAC-AATGTCGC
1 TGGCCTTGAATCAGCACATTGGCACCTTTATCATTCTTCTCATCTTCAAGT-CTAATGTCGC
* * * * * *
748456 TGACCTTGAATCAGCACATTGGCA-CTCTTCTCATCCTTATCATCTTTAAGTCCAATGT
1 TGGCCTTGAATCAGCACATTGGCACCT-TTATCATTCTTCTCATCTTCAAGTCTAATGT
748514 TGCAGGCTTT
Statistics
Matches: 493, Mismatches: 86, Indels: 86
0.74 0.13 0.13
Matches are distributed among these distances:
47 2 0.00
48 1 0.00
49 1 0.00
50 1 0.00
51 29 0.06
52 139 0.28
53 16 0.03
54 7 0.01
55 11 0.02
56 3 0.01
57 1 0.00
58 5 0.01
59 7 0.01
60 16 0.03
61 253 0.51
62 1 0.00
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.37
Consensus pattern (61 bp):
TGGCCTTGAATCAGCACATTGGCACCTTTATCATTCTTCTCATCTTCAAGTCTAATGTCGC
Found at i:748031 original size:174 final size:174
Alignment explanation
Indices: 747809--748419 Score: 586
Period size: 174 Copynumber: 3.6 Consensus size: 174
747799 GGCACCTTTG
* * * *
747809 TCATCTTTAAGTCCAATATTGTTGGCTTTGAATCAGCATATTGGCACCTTTATCATTCTTCTCAT
1 TCATCTTTAAGTCCAATATCGCTGGCCTTGAATTAGCATATTGGCACCTTTATCATTCTTCTCAT
** * * * *
747874 CTTCAAGTTTAATGTCGTTGGCCTTAAATCAGCACATTAGCACCTTTTTCATCTTTAAACCCAAT
66 CTTCAAGTCCAATATCGCTGGCCTTAAATCAGCACATTAGCACATTTGTCATCTTTAAACCCAAT
*
747939 ATCGCTGGCCTTGAATCAGCATATTGATACCTTTATCATTCTTC
131 ATCGCTGGCCTTGAATCAGCATATTGACACCTTTATCATTCTTC
*
747983 TCAT-TTTCAAGTCCAATATCGCTGGCCTTGAATTAGCATATCGGCACCTTTATCATTCTTCTCA
1 TCATCTTT-AAGTCCAATATCGCTGGCCTTGAATTAGCATATTGGCACCTTTATCATTCTTCTCA
* * * * * *
748047 TCTTCGAGTCCAATATCGCTGGTCTTTAATCAGCACATTGGCACATTTGTCATCTTTAAGCTCAA
65 TCTTCAAGTCCAATATCGCTGGCCTTAAATCAGCACATTAGCACATTTGTCATCTTTAAACCCAA
* *
748112 TATCTCTGGCCTTGAATCAGCATATTGGCACCTTTATCATTCTTC
130 TATCGCTGGCCTTGAATCAGCATATTGACACCTTTATCATTCTTC
* * * *
748157 TCATCTTTAAG-CTCAATGTCGCTGACCTTGAATTAGCACATTGGCACCTTTATCA------T-G
1 TCATCTTTAAGTC-CAATATCGCTGGCCTTGAATTAGCATATTGGCACCTTTATCATTCTTCTCA
* * * * ** *
748214 T-TT-AAGTCCAATGTCGCTAGCCTTGAATCAGCACATTGGCATTC-TTT-TCATCTTTAAGTCT
65 TCTTCAAGTCCAATATCGCTGGCCTTAAATCAGCACATTAGCA--CATTTGTCATCTTTAAACCC
* * * * * *
748275 AATGTCGTTAGCCTTGAATCAGCACATTG---GC---A-C-TT-TTG
128 AATATCGCTGGCCTTGAATCAGCATATTGACACCTTTATCATTCTTC
* * * *
748313 TCATTTTTAAG-CCAATATCACTGGCCTTGAATCAGCATATTAGCACCTTTATCATTCTTCTCAT
1 TCATCTTTAAGTCCAATATCGCTGGCCTTGAATTAGCATATTGGCACCTTTATCATTCTTCTCAT
* * * * * *
748377 CTTCAAG-CCTGATATCGCTAGCCGTGAATCAGCATATTGGCAC
66 CTTCAAGTCC-AATATCGCTGGCCTTAAATCAGCACATTAGCAC
748420 CTTTATTATT
Statistics
Matches: 370, Mismatches: 52, Indels: 42
0.80 0.11 0.09
Matches are distributed among these distances:
155 36 0.10
156 13 0.04
157 2 0.01
158 1 0.00
159 1 0.00
161 1 0.00
162 3 0.01
163 4 0.01
164 31 0.08
165 68 0.18
166 5 0.01
167 2 0.01
168 1 0.00
173 4 0.01
174 195 0.53
175 3 0.01
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.37
Consensus pattern (174 bp):
TCATCTTTAAGTCCAATATCGCTGGCCTTGAATTAGCATATTGGCACCTTTATCATTCTTCTCAT
CTTCAAGTCCAATATCGCTGGCCTTAAATCAGCACATTAGCACATTTGTCATCTTTAAACCCAAT
ATCGCTGGCCTTGAATCAGCATATTGACACCTTTATCATTCTTC
Found at i:748143 original size:113 final size:113
Alignment explanation
Indices: 747996--748513 Score: 472
Period size: 113 Copynumber: 4.6 Consensus size: 113
747986 TTTTCAAGTC
* * *
747996 CAATATCGCTGGCCTTGAATTAGCATATCGGCACCTTTATCATTCTTCTCATCTTCGAGTCCAAT
1 CAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCATTCTTCTCATCTTCAAGTCCAAT
* * *
748061 ATCGCTGGTCTTTAATCAGCACATTGGCACATTTGTCATCTTTAAGCT
66 GTCGCTGGCCTTGAATCAGCACATTGGCACATTTGTCATCTTTAAGCT
* *
748109 CAATATCTCTGGCCTTGAATCAGCATATTGGCACCTTTATCATTCTTCTCATCTTTAAG-CTCAA
1 CAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCATTCTTCTCATCTTCAAGTC-CAA
* * * * *
748173 TGTCGCTGACCTTGAATTAGCACATTGGCACCTTTATCATGTTTAAG-T
65 TGTCGCTGGCCTTGAATCAGCACATTGGCACATTTGTCATCTTTAAGCT
* * * * *
748221 CCAATGTCGCTAGCCTTGAATCAGCACATTGGCA----T-TC--T-TT-TCATCTTTAAGTCTAA
1 -CAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCATTCTTCTCATCTTCAAGTCCAA
* * * *
748277 TGTCGTTAGCCTTGAATCAGCACATTGGCACTTTTGTCATTTTTAAGC-
65 TGTCGCTGGCCTTGAATCAGCACATTGGCACATTTGTCATCTTTAAGCT
* * *
748325 CAATATCACTGGCCTTGAATCAGCATATTAGCACCTTTATCATTCTTCTCATCTTCAAG-CCTGA
1 CAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCATTCTTCTCATCTTCAAGTCC-AA
* * * * *
748389 TATCGCTAGCCGTGAATCAGCATATTGGCACCTTTATTATTCTTCGCATCTTTAAG-T
65 TGTCGCTGGCCTTGAATCAGCACATTGGCA-C---A-T-TT-GT--CATCTTTAAGCT
* * * * * * *
748446 ACAATGTCGCTGACCTTGAATCAGCACATTGGCA-CTCTTCTCATCCTTATCATCTTTAAGTCCA
1 -CAATATCGCTGGCCTTGAATCAGCATATTGGCACCT-TTATCATTCTTCTCATCTTCAAGTCCA
748510 ATGT
64 ATGT
748514 TGCAGGCTTT
Statistics
Matches: 327, Mismatches: 51, Indels: 45
0.77 0.12 0.11
Matches are distributed among these distances:
103 28 0.09
104 53 0.16
105 3 0.01
106 1 0.00
107 1 0.00
108 4 0.01
109 1 0.00
110 1 0.00
111 3 0.01
112 39 0.12
113 126 0.39
117 1 0.00
118 2 0.01
119 1 0.00
121 11 0.03
122 50 0.15
123 2 0.01
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.36
Consensus pattern (113 bp):
CAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCATTCTTCTCATCTTCAAGTCCAAT
GTCGCTGGCCTTGAATCAGCACATTGGCACATTTGTCATCTTTAAGCT
Found at i:749234 original size:20 final size:20
Alignment explanation
Indices: 749211--749261 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
749201 ACACCCAGAT
749211 GTATCGATACAAATTGCTCA
1 GTATCGATACAAATTGCTCA
**
749231 GTATCGATACAAATTGCTTT
1 GTATCGATACAAATTGCTCA
749251 GTATCGATACA
1 GTATCGATACA
749262 TAAAATTGGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Consensus pattern (20 bp):
GTATCGATACAAATTGCTCA
Found at i:754293 original size:14 final size:14
Alignment explanation
Indices: 754274--754302 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
754264 CAAAACAATT
754274 TGAAAGATAAAAGA
1 TGAAAGATAAAAGA
754288 TGAAAGATAAAAGA
1 TGAAAGATAAAAGA
754302 T
1 T
754303 TAAGGAAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.62, C:0.00, G:0.21, T:0.17
Consensus pattern (14 bp):
TGAAAGATAAAAGA
Found at i:755670 original size:21 final size:22
Alignment explanation
Indices: 755644--755685 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
755634 GCTCTCGTTC
* *
755644 AAAAATT-TTCCCTTTGATAAA
1 AAAAATTCTCCCCCTTGATAAA
755665 AAAAATTCTCCCCCTTGATAA
1 AAAAATTCTCCCCCTTGATAA
755686 TCGTTTAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.40, C:0.21, G:0.05, T:0.33
Consensus pattern (22 bp):
AAAAATTCTCCCCCTTGATAAA
Found at i:755738 original size:22 final size:23
Alignment explanation
Indices: 755691--755744 Score: 85
Period size: 23 Copynumber: 2.4 Consensus size: 23
755681 GATAATCGTT
755691 TAAAAGATTTTCTCCCCTCTTGA
1 TAAAAGATTTTCTCCCCTCTTGA
*
755714 TAAAAGATTTTCTCTCCT-TTGA
1 TAAAAGATTTTCTCCCCTCTTGA
755736 TAAAA-ATTT
1 TAAAAGATTT
755745 ATTTTCAAAC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
21 4 0.13
22 9 0.30
23 17 0.57
ACGTcount: A:0.31, C:0.19, G:0.07, T:0.43
Consensus pattern (23 bp):
TAAAAGATTTTCTCCCCTCTTGA
Found at i:757132 original size:20 final size:22
Alignment explanation
Indices: 757088--757132 Score: 58
Period size: 20 Copynumber: 2.1 Consensus size: 22
757078 GCAGTAAGTG
* *
757088 TGGGAGCTGCCTGATTGCGACC
1 TGGGAGCTGCCTGATCGCCACC
757110 TGGGAG-TGCC-GATCGCCACC
1 TGGGAGCTGCCTGATCGCCACC
757130 TGG
1 TGG
757133 AGGTGGCTGC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 11 0.52
21 4 0.19
22 6 0.29
ACGTcount: A:0.13, C:0.29, G:0.38, T:0.20
Consensus pattern (22 bp):
TGGGAGCTGCCTGATCGCCACC
Found at i:763401 original size:32 final size:32
Alignment explanation
Indices: 763365--763433 Score: 84
Period size: 32 Copynumber: 2.2 Consensus size: 32
763355 TCGTAACGTA
* *
763365 CGCTCAACCCCGGCAATAGGGCAAATGAGGCG
1 CGCTCAACCCCGACAATAGAGCAAATGAGGCG
* **
763397 CGCTCGACCCCGATGATAGAGCAAATGAGGCG
1 CGCTCAACCCCGACAATAGAGCAAATGAGGCG
*
763429 TGCTC
1 CGCTC
763434 GACTTAATAT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.26, C:0.30, G:0.30, T:0.13
Consensus pattern (32 bp):
CGCTCAACCCCGACAATAGAGCAAATGAGGCG
Found at i:766587 original size:19 final size:19
Alignment explanation
Indices: 766528--766587 Score: 59
Period size: 19 Copynumber: 3.1 Consensus size: 19
766518 TAGCGATACA
*
766528 TTGTATCGATACAACACT-T
1 TTGTATCGATACAA-ATTGT
* *
766547 ATGTATCGATACAGTTATTGT
1 TTGTATCGATACA--AATTGT
766568 TTGTATCGATACAAATTGT
1 TTGTATCGATACAAATTGT
766587 T
1 T
766588 GAAATTCAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
19 18 0.55
20 2 0.06
21 13 0.39
ACGTcount: A:0.30, C:0.13, G:0.15, T:0.42
Consensus pattern (19 bp):
TTGTATCGATACAAATTGT
Found at i:767351 original size:52 final size:51
Alignment explanation
Indices: 767217--768656 Score: 632
Period size: 49 Copynumber: 30.8 Consensus size: 51
767207 AGTGATAAAA
* * * * *
767217 GTGCCAATATGCTGATTC-AGGACTAGTGATATTGGGCTTAAAGATGTA-AAG
1 GTGCCAATGTGCTGATTCAAGG-CCAGCGACATTGGACTTAAAGATG-AGAAG
* * * ** * * *
767268 AATGTCAATGTGCTGATTCACGATCAGCGACATTAGTCTTGAAGATGAGAAG
1 -GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGAAG
* * * **
767320 AATGTCAATGTGCTGATTCAAGGCCAACGACATTGGGTTTTAAAGATGACGAAG
1 -GTGCCAATGTGCTGATTCAAGGCCAGCGACATT-GGACTTAAAGATGA-GAAG
* * *
767374 GTGCCAATATGCTAATTCAAGGCCAGCGATATTGGACTTAAAGAT--GAAG
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGAAG
767423 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGA-GAAG
* * *
767475 GCGTCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT--GAAG
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGAAG
* * *
767524 GTGCCAATGTGCTGATTCAAGGCTAGCAACATTGGACTTAAAGAT--G-AT
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGAAG
* * * * * * *
767572 GTGCCAGTATGCTGATTCAAGACCAGTGATATTGGGCTTAAAGATG-GTTGAG
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAG--AAG
* * *
767624 GTGCCGATGTGCTGATTCAAGGCCAACGACA-TCGATCTTAAAGAT-A-AAG
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGA-CTTAAAGATGAGAAG
* * ***
767673 GCGCCAATATGCTGATTCAAGGCCAGCG--A-T--AC-T---G--G-GCTT
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGAAG
* * * * *
767712 GTGCCAATGTGCTGATTTAAGGCGAACGACATCGGTCTTAAAGAT-A-AAG
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGAAG
* * ***
767761 GTGCCAATATGCTGATTCAAGGCTAGCG--A-T--AC-T---G--G-GCTT
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGAAG
* * *
767800 GTGCCAATGTGCTGATTCAAGGCCAGGGACATTGGTCTT-AA-A-GACAAG
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGAAG
* * * *
767848 GTGCCAATATGTTGATTCAAGGCCAGCGATATTGGGC-T-----T----A-
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGAAG
*** *
767888 -TGCCAATGTGTAAATTCAAGGCCAGCGACATTGGTCTTAAAGAT-A-AAG
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGAAG
* * * * * *
767936 GTGCCAATATGTTGATTTAAGGCCAACGATATTGGGC-T-----T----A-
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGAAG
* *
767976 -TGCCAATGTGCTAATTCAAGGCCAGCGACATTGGTCTTAAAGAT-A-AAG
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGAAG
* * * *
768024 GTGCCAATATGCTGATTCAAGGCTAGCGACATTGGTCTT-AA-A-GACAAG
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGAAG
* * *
768072 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTC-T-----T----A-
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGAAG
* * *
768112 -TGCCAATGTGCTGATTCAAGGCCAGCAACATTGGTCTT-AA-A-GACAAG
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGAAG
* * * *
768159 GTGGCAATATGCTGATTCAAGGCCAGCGATATTGGTC-T-----T----A-
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGAAG
* * *
768199 -TGCCAATGTGCTGATTCAAGGCCAGCAACATTGGTCTT-AA-A-GACAAG
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGAAG
* * * * *
768246 GTGCCAATATGCTGATTCAAGGCCAACGATATTGGAC-TCAAGATGGAAAAG
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT-GAGAAG
* * * *
768297 GTGCCAATATGCTGATTCAAGGCCAGCGATACTGGGCTT---G-T-----G
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGAAG
* * * *
768339 CTG---ATGTGCTAATTCAAGGCCAGCGACATTGGTCTT-AA-A-GACAAG
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGAAG
* * * * * *
768384 GTGCCAATATGCTAATTCAAGGCTAGCGATATT-G--TT----CT---TA-
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGAAG
* * * *
768424 -TGCCAATGTGCTGATTCAAGGCCAGCAACATTAGTCTT-AA-A-GACAAG
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGAAG
* * * * *
768471 GTGCCAATATGCTAATTCAAGGCCAGCGATATTGGAC-TCAAGATGGAAAAG
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT-GAGAAG
* * * *
768522 GTGCTAATATGCTGATTCAAGGCCAACGATATTGGAC-T-----T-A-AAG
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGAAG
* * *
768565 GTGCCAATGTGCTGATTCAAGGCCAGCGACATCGGTCTCAAAGAT--GAAG
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGAAG
* *
768614 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAG
768657 GTGCCACGAA
Statistics
Matches: 1084, Mismatches: 182, Indels: 247
0.72 0.12 0.16
Matches are distributed among these distances:
39 228 0.21
40 7 0.01
41 7 0.01
42 6 0.01
43 37 0.03
44 5 0.00
45 10 0.01
46 4 0.00
47 14 0.01
48 234 0.22
49 251 0.23
51 82 0.08
52 156 0.14
53 39 0.04
54 4 0.00
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (51 bp):
GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGAAG
Found at i:767634 original size:149 final size:150
Alignment explanation
Indices: 767217--767699 Score: 472
Period size: 149 Copynumber: 3.2 Consensus size: 150
767207 AGTGATAAAA
* ** * * * * *
767217 GTGCCAATATGCTGATTC-AGGACTAGTGATATTGGGCTTAAAGATGTAAAGAATGTCAATGTGC
1 GTGCCAATATGCTGATTCAAGG-CCAGCAACATTGGACTTAAAGATG--AAG-GTGCCAATATGC
* * * * * ** *
767281 TGATTCACGATCAGCGACATTAGTCTTGAAGATGA-GAAGAATGTCAATGTGCTGATTCAAGGCC
62 TGATTCAAGACCAGCGACATTGGACTTAAAGATGACGAAG-GCGCCAATGTGCTGATTCAAGGCC
**
767345 AACGACATTGGGTTTTAAAGATGACGAAG
126 AACGACATT-GGACTTAAAGAT---GAAG
* * * *
767374 GTGCCAATATGCTAATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAT
1 GTGCCAATATGCTGATTCAAGGCCAGCAACATTGGACTTAAAGATGAAGGTGCCAATATGCTGAT
* * *
767439 TCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCGTCAATGTGCTGATTCAAGGCCAGCGA
66 TCAAGACCAGCGACATTGGACTTAAAGATGACGAAGGCGCCAATGTGCTGATTCAAGGCCAACGA
*
767504 TATTGGACTTAAAGATGAAG
131 CATTGGACTTAAAGATGAAG
* * * *
767524 GTGCCAATGTGCTGATTCAAGGCTAGCAACATTGGACTTAAAGATG-ATGTGCCAGTATGCTGAT
1 GTGCCAATATGCTGATTCAAGGCCAGCAACATTGGACTTAAAGATGAAGGTGCCAATATGCTGAT
* * * ** * *
767588 TCAAGACCAGTGATATTGGGCTTAAAGATGGTTG-AGGTGCCGATGTGCTGATTCAAGGCCAACG
66 TCAAGACCAGCGACATTGGACTTAAAGAT-GACGAAGGCGCCAATGTGCTGATTCAAGGCCAACG
* *
767652 ACA-TCGATCTTAAAGATAAAG
130 ACATTGGA-CTTAAAGATGAAG
*
767673 GCGCCAATATGCTGATTCAAGGCCAGC
1 GTGCCAATATGCTGATTCAAGGCCAGC
767700 GATACTGGGC
Statistics
Matches: 280, Mismatches: 42, Indels: 16
0.83 0.12 0.05
Matches are distributed among these distances:
148 3 0.01
149 104 0.37
150 47 0.17
153 10 0.04
154 68 0.24
155 7 0.03
157 38 0.14
158 3 0.01
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (150 bp):
GTGCCAATATGCTGATTCAAGGCCAGCAACATTGGACTTAAAGATGAAGGTGCCAATATGCTGAT
TCAAGACCAGCGACATTGGACTTAAAGATGACGAAGGCGCCAATGTGCTGATTCAAGGCCAACGA
CATTGGACTTAAAGATGAAG
Found at i:767734 original size:39 final size:39
Alignment explanation
Indices: 767675--768224 Score: 132
Period size: 39 Copynumber: 12.6 Consensus size: 39
767665 AGATAAAGGC
767675 GCCAATATGCTGATTCAAGGCCAGCGATACTGGGCTTGT
1 GCCAATATGCTGATTCAAGGCCAGCGATACTGGGCTTGT
* * * * * *
767714 GCCAATGTGCTGATTTAAGGCGAACGACA-TCGGTCTTAAAGATAAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCGATACT-GGGC-T-----T----GT
*
767763 GCCAATATGCTGATTCAAGGCTAGCGATACTGGGCTTGT
1 GCCAATATGCTGATTCAAGGCCAGCGATACTGGGCTTGT
* * * * *
767802 GCCAATGTGCTGATTCAAGGCCAGGGACATTGGTCTTAAAGACAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCGATACTGGGCTT---------GT
* * *
767850 GCCAATATGTTGATTCAAGGCCAGCGATATTGGGCTTAT
1 GCCAATATGCTGATTCAAGGCCAGCGATACTGGGCTTGT
* * * * *
767889 GCCAATGTG-TAAATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGT
1 GCCAATATGCT-GATTCAAGGCCAGCGATACTGGGC-T-----T----GT
* * * * *
767938 GCCAATATGTTGATTTAAGGCCAACGATATTGGGCTTAT
1 GCCAATATGCTGATTCAAGGCCAGCGATACTGGGCTTGT
* * * * *
767977 GCCAATGTGCTAATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCGATACTGGGC-T-----T----GT
* * * *
768026 GCCAATATGCTGATTCAAGGCTAGCGACATTGGTCTTAAAGACAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCGATACTGGGCTT---------GT
* * *
768074 GCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAT
1 GCCAATATGCTGATTCAAGGCCAGCGATACTGGGCTTGT
* * * * *
768113 GCCAATGTGCTGATTCAAGGCCAGCAACATTGGTCTTAAAGACAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCGATACTGGGCTT---------GT
* * * *
768161 GGCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAT
1 GCCAATATGCTGATTCAAGGCCAGCGATACTGGGCTTGT
*
768200 GCCAATGTGCTGATTCAAGGCCAGC
1 GCCAATATGCTGATTCAAGGCCAGC
768225 AACATTGGTC
Statistics
Matches: 392, Mismatches: 62, Indels: 114
0.69 0.11 0.20
Matches are distributed among these distances:
38 2 0.01
39 178 0.45
40 3 0.01
43 3 0.01
45 3 0.01
48 111 0.28
49 90 0.23
50 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (39 bp):
GCCAATATGCTGATTCAAGGCCAGCGATACTGGGCTTGT
Found at i:767871 original size:48 final size:47
Alignment explanation
Indices: 767800--768656 Score: 686
Period size: 48 Copynumber: 18.9 Consensus size: 47
767790 TACTGGGCTT
* * *
767800 GTGCCAATGTGCTGATTCAAGGCCAGGGACATTGGTCTTAAAGACAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGA-AAG
* *
767848 GTGCCAATATGTTGATTCAAGGCCAGCGATATTGGGCTT------A-
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGAAAG
* * *
767888 -TGCCAATGTG-TAAATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAG
1 GTGCCAATATGCT-GATTCAAGGCCAGCGATATTGGTCTTAAAG--AAAG
* * * *
767936 GTGCCAATATGTTGATTTAAGGCCAACGATATTGGGCTT------A-
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGAAAG
* * *
767976 -TGCCAATGTGCTAATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAG--AAAG
* *
768024 GTGCCAATATGCTGATTCAAGGCTAGCGACATTGGTCTTAAAGACAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGA-AAG
768072 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTT------A-
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGAAAG
* * *
768112 -TGCCAATGTGCTGATTCAAGGCCAGCAACATTGGTCTTAAAGACAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGA-AAG
*
768159 GTGGCAATATGCTGATTCAAGGCCAGCGATATTGGTCTT------A-
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGAAAG
* * *
768199 -TGCCAATGTGCTGATTCAAGGCCAGCAACATTGGTCTTAAAGACAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGA-AAG
* * *
768246 GTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTCAAGATGGAAAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAA-A--G-AAAG
* *
768297 GTGCCAATATGCTGATTCAAGGCCAGCGATACTGGGCTT--------
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGAAAG
** * * *
768336 GTGCTGATGTGCTAATTCAAGGCCAGCGACATTGGTCTTAAAGACAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGA-AAG
* * *
768384 GTGCCAATATGCTAATTCAAGGCTAGCGATATTGTTCTT------A-
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGAAAG
* * * *
768424 -TGCCAATGTGCTGATTCAAGGCCAGCAACATTAGTCTTAAAGACAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGA-AAG
* * *
768471 GTGCCAATATGCTAATTCAAGGCCAGCGATATTGGACTCAAGATGGAAAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAA-A--G-AAAG
* * *
768522 GTGCTAATATGCTGATTCAAGGCCAACGATATTGGACTT----AAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGAAAG
* * * *
768565 GTGCCAATGTGCTGATTCAAGGCCAGCGACATCGGTCTCAAAGATGAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGA--AAG
*
768614 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAG
768657 GTGCCACGAA
Statistics
Matches: 645, Mismatches: 91, Indels: 145
0.73 0.10 0.16
Matches are distributed among these distances:
38 1 0.00
39 195 0.30
41 5 0.01
43 36 0.06
46 3 0.00
47 4 0.01
48 208 0.32
49 112 0.17
50 1 0.00
51 78 0.12
52 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (47 bp):
GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGAAAG
Found at i:767905 original size:87 final size:87
Alignment explanation
Indices: 767625--768505 Score: 801
Period size: 87 Copynumber: 9.9 Consensus size: 87
767615 ATGGTTGAGG
* * * * *
767625 TGCCGATGTGCTGATTCAAGGCCAACGACATCGATCTTAAAGATAAAGGCGCCAATATGCTGATT
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGA-AAAGGTGCCAATATGCTGATT
* *
767690 CAAGGCCAGCGATACTGGGCTTG
65 CAAGGCCAGCGATATTGGGCTTA
* * * *
767713 TGCCAATGTGCTGATTTAAGGCGAACGACATCGGTCTTAAAGATAAAGGTGCCAATATGCTGATT
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGA-AAAGGTGCCAATATGCTGATT
* * *
767778 CAAGGCTAGCGATACTGGGCTTG
65 CAAGGCCAGCGATATTGGGCTTA
* * *
767801 TGCCAATGTGCTGATTCAAGGCCAGGGACATTGGTCTTAAAGACAAGGTGCCAATATGTTGATTC
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGAAAAGGTGCCAATATGCTGATTC
767866 AAGGCCAGCGATATTGGGCTTA
66 AAGGCCAGCGATATTGGGCTTA
* *
767888 TGCCAATGTG-TAAATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGTTGAT
1 TGCCAATGTGCT-GATTCAAGGCCAGCGACATTGGTCTTAAAGA-AAAGGTGCCAATATGCTGAT
* *
767952 TTAAGGCCAACGATATTGGGCTTA
64 TCAAGGCCAGCGATATTGGGCTTA
*
767976 TGCCAATGTGCTAATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATT
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGA-AAAGGTGCCAATATGCTGATT
* * *
768041 CAAGGCTAGCGACATTGGTCTTAAAGACAA
65 CAAGGCCAGCGATATTGGGCTT-------A
* * *
768071 GGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTT-------A--TGCCAATGTGCTGAT
1 --TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGAAAAGGTGCCAATATGCTGAT
* * *
768127 TCAAGGCCAGCAACATTGGTCTTAAAGACAA
64 TCAAGGCCAGCGATATTGGGCTT-------A
* * * *
768158 GGTGGCAATATGCTGATTCAAGGCCAGCGATATTGGTCTT-------A--TGCCAATGTGCTGAT
1 --TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGAAAAGGTGCCAATATGCTGAT
* * *
768214 TCAAGGCCAGCAACATTGGTCTTAAAGACAA
64 TCAAGGCCAGCGATATTGGGCTT-------A
* * * * *
768245 GGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTCAAGATGGAAAAGGTGCCAATATGCT
1 --TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAA-A--GAAAAGGTGCCAATATGCT
* *
768310 GATTCAAGGCCAGCGATACTGGGCTTG
61 GATTCAAGGCCAGCGATATTGGGCTTA
** * * *
768337 TGCTGATGTGCTAATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTAATTC
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGAAAAGGTGCCAATATGCTGATTC
* **
768402 AAGGCTAGCGATATTGTTCTTA
66 AAGGCCAGCGATATTGGGCTTA
* * * *
768424 TGCCAATGTGCTGATTCAAGGCCAGCAACATTAGTCTTAAAGACAAGGTGCCAATATGCTAATTC
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGAAAAGGTGCCAATATGCTGATTC
768489 AAGGCCAGCGATATTGG
66 AAGGCCAGCGATATTGG
768506 ACTCAAGATG
Statistics
Matches: 703, Mismatches: 66, Indels: 49
0.86 0.08 0.06
Matches are distributed among these distances:
86 1 0.00
87 357 0.51
88 240 0.34
89 3 0.00
90 32 0.05
95 1 0.00
97 36 0.05
99 33 0.05
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (87 bp):
TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGAAAAGGTGCCAATATGCTGATTC
AAGGCCAGCGATATTGGGCTTA
Found at i:768094 original size:136 final size:136
Alignment explanation
Indices: 767901--768198 Score: 481
Period size: 136 Copynumber: 2.2 Consensus size: 136
767891 CAATGTGTAA
* *
767901 ATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGTTGATTTAAGGCCAACGAT
1 ATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGAT
*
767966 ATTGGGCTTATGCCAATGTGCTAATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAA
66 ATTGGGCTTATGCCAATGTGCTAATTCAAGGCCAGCAACATTGGTCTTAAAGA-AAAGGTGCCAA
768031 TATGCTG
130 TATGCTG
* * *
768038 ATTCAAGGCTAGCGACATTGGTCTTAAAGA-CAAGGTGCCAATATGCTGATTCAAGGCCAGCGAT
1 ATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGAT
* * * *
768102 ATTGGTCTTATGCCAATGTGCTGATTCAAGGCCAGCAACATTGGTCTTAAAGACAAGGTGGCAAT
66 ATTGGGCTTATGCCAATGTGCTAATTCAAGGCCAGCAACATTGGTCTTAAAGAAAAGGTGCCAAT
768167 ATGCTG
131 ATGCTG
*
768173 ATTCAAGGCCAGCGATATTGGTCTTA
1 ATTCAAGGCCAGCGACATTGGTCTTA
768199 TGCCAATGTG
Statistics
Matches: 149, Mismatches: 12, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
135 40 0.27
136 80 0.54
137 29 0.19
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.27
Consensus pattern (136 bp):
ATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGAT
ATTGGGCTTATGCCAATGTGCTAATTCAAGGCCAGCAACATTGGTCTTAAAGAAAAGGTGCCAAT
ATGCTG
Found at i:768232 original size:39 final size:39
Alignment explanation
Indices: 768163--768237 Score: 123
Period size: 39 Copynumber: 1.9 Consensus size: 39
768153 GACAAGGTGG
* *
768163 CAATATGCTGATTCAAGGCCAGCGATATTGGTCTTATGC
1 CAATATGCTGATTCAAGGCCAGCAACATTGGTCTTATGC
*
768202 CAATGTGCTGATTCAAGGCCAGCAACATTGGTCTTA
1 CAATATGCTGATTCAAGGCCAGCAACATTGGTCTTA
768238 AAGACAAGGT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (39 bp):
CAATATGCTGATTCAAGGCCAGCAACATTGGTCTTATGC
Found at i:768357 original size:138 final size:135
Alignment explanation
Indices: 768112--768417 Score: 432
Period size: 138 Copynumber: 2.2 Consensus size: 135
768102 ATTGGTCTTA
* * * * * * *
768112 TGCCAATGTGCTGATTCAAGGCCAGCAACATTGGTCTTAAAGACAAGGTGGCAATATGCTGATTC
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTCAAAGAAAAGGTGCCAATATGCTGATTC
* * *
768177 AAGGCCAGCGATATTGGTCTTATGCCAATGTGCTGATTCAAGGCCAGCAACATTGGTCTTAAAGA
66 AAGGCCAGCGATACTGGGCTTATGCCAATGTGCTAATTCAAGGCCAGCAACATTGGTCTTAAAGA
768242 CAAGG
131 CAAGG
*
768247 TGCCAATATGCTGATTCAAGGCCAACGATATTGGACTCAAGATGGAAAAGGTGCCAATATGCTGA
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTCAA-A--GAAAAGGTGCCAATATGCTGA
* ** *
768312 TTCAAGGCCAGCGATACTGGGCTTGTGCTGATGTGCTAATTCAAGGCCAGCGACATTGGTCTTAA
63 TTCAAGGCCAGCGATACTGGGCTTATGCCAATGTGCTAATTCAAGGCCAGCAACATTGGTCTTAA
768377 AGACAAGG
128 AGACAAGG
* *
768385 TGCCAATATGCTAATTCAAGGCTAGCGATATTG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTG
768418 TTCTTATGCC
Statistics
Matches: 150, Mismatches: 18, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
135 34 0.23
136 1 0.01
138 115 0.77
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (135 bp):
TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTCAAAGAAAAGGTGCCAATATGCTGATTC
AAGGCCAGCGATACTGGGCTTATGCCAATGTGCTAATTCAAGGCCAGCAACATTGGTCTTAAAGA
CAAGG
Found at i:768377 original size:225 final size:223
Alignment explanation
Indices: 767800--768653 Score: 1201
Period size: 225 Copynumber: 3.8 Consensus size: 223
767790 TACTGGGCTT
* * * * * *
767800 GTGCCAATGTGCTGATTCAAGGCCAGGGACATTGGTCTTAAAGACAAGGTGCCAATATGTTGATT
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTCAAAGAAAAGGTGCCAATATGCTGATT
767865 CAAGGCCAGCGATATTGGGCTTATGCCAATGTG-TAAATTCAAGGCCAGCGACATTGGTCTTAAA
66 CAAGGCCAGCGATATTGGGCTTATGCCAATGTGCT-AATTCAAGGCCAGCGACATTGGTCTTAAA
* * * * * *
767929 GATAAAGGTGCCAATATGTTGATTTAAGGCCAACGATATTGGGCTTATGCCAATGTGCTAATTCA
130 GATCAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTATGCCAATGTGCTGATTCA
* *
767994 AGGCCAGCGACATTGGTCTTAAAGATAAAG
195 AGGCCAGCAACATTGGTCTTAAAGA-CAAG
* * * *
768024 GTGCCAATATGCTGATTCAAGGCTAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATT
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTCAAAGAAAAGGTGCCAATATGCTGATT
* * *
768089 CAAGGCCAGCGATATTGGTCTTATGCCAATGTGCTGATTCAAGGCCAGCAACATTGGTCTTAAAG
66 CAAGGCCAGCGATATTGGGCTTATGCCAATGTGCTAATTCAAGGCCAGCGACATTGGTCTTAAAG
*
768154 A-CAAGGTGGCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTATGCCAATGTGCTGATTCAA
131 ATCAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTATGCCAATGTGCTGATTCAA
768218 GGCCAGCAACATTGGTCTTAAAGACAAG
196 GGCCAGCAACATTGGTCTTAAAGACAAG
* *
768246 GTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTCAAGATGGAAAAGGTGCCAATATGCTG
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTCAA-A--GAAAAGGTGCCAATATGCTG
* * **
768311 ATTCAAGGCCAGCGATACTGGGCTTGTGCTGATGTGCTAATTCAAGGCCAGCGACATTGGTCTTA
63 ATTCAAGGCCAGCGATATTGGGCTTATGCCAATGTGCTAATTCAAGGCCAGCGACATTGGTCTTA
* * *
768376 AAGA-CAAGGTGCCAATATGCTAATTCAAGGCTAGCGATATTGTTCTTATGCCAATGTGCTGATT
128 AAGATCAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTATGCCAATGTGCTGATT
*
768440 CAAGGCCAGCAACATTAGTCTTAAAGACAAG
193 CAAGGCCAGCAACATTGGTCTTAAAGACAAG
* * *
768471 GTGCCAATATGCTAATTCAAGGCCAGCGATATTGGACTCAAGATGGAAAAGGTGCTAATATGCTG
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTCAA-A--GAAAAGGTGCCAATATGCTG
* * * *
768536 ATTCAAGGCCAACGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATCGGT
63 ATTCAAGGCCAGCGATATTGGGCTT--A--TGCCAATGTGCTAATTCAAGGCCAGCGACATTGGT
* * *
768601 CTCAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
124 CTTAAAGATCAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTA
768654 AAGGTGCCAC
Statistics
Matches: 570, Mismatches: 51, Indels: 12
0.90 0.08 0.02
Matches are distributed among these distances:
222 39 0.07
223 80 0.14
224 122 0.21
225 252 0.44
229 38 0.07
230 39 0.07
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (223 bp):
GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTCAAAGAAAAGGTGCCAATATGCTGATT
CAAGGCCAGCGATATTGGGCTTATGCCAATGTGCTAATTCAAGGCCAGCGACATTGGTCTTAAAG
ATCAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTATGCCAATGTGCTGATTCAA
GGCCAGCAACATTGGTCTTAAAGACAAG
Found at i:768449 original size:312 final size:310
Alignment explanation
Indices: 767622--768505 Score: 1155
Period size: 312 Copynumber: 2.8 Consensus size: 310
767612 AAGATGGTTG
* * * * *
767622 AGGTGCCGATGTGCTGATTCAAGGCCAACGACA-TCGATCTTAAA-GATAAAGGCGCCAATATGC
1 AGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGA-C-TAAATGA-AAAGGTGCCAATATGC
** * * * *
767685 TGATTCAAGGCCAGCGATACTGGGCTTGTGCCAATGTGCTGATTTAAGGCGAACGACATCGGTCT
63 TGATTCAAGGCCAGCGATACTGGGCTTGTGCTGATGTGCTGATTCAAGGCCAGCGACATTGGTCT
* * * *
767750 TAAAGATAAAGGTGCCAATATGCTGATTCAAGGCTAGCGATACTGGGCTTGTGCCAATGTGCTGA
128 TAAAGA-CAAGGTGCCAATATGCTGATTCAAGGCTAGCGATATTGGTCTTATGCCAATGTGCTGA
** *
767815 TTCAAGGCCAGGGACATTGGTCTTAAAGACAAGGTGCCAATATGTTGATTCAAGGCCAGCGATAT
192 TTCAAGGCCAGCAACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAAGGCCAGCGATAT
*
767880 TGGGCTTATGCCAATGTGTAAATTCAAGGCCAGCGACATTGGTCTTAAAGATAA
257 TGGGCTTATGCCAATGTGTAAATTCAAGGCCAGCAACATTGGTCTTAAAGATAA
* * * * *
767934 AGGTGCCAATATGTTGATTTAAGGCCAACGATATTGGGCT---T----A--TGCCAATGTGCTAA
1 AGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTAAATGAAAAGGTGCCAATATGCTGA
* * * * * *
767990 TTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCTAGCGACA
66 TTCAAGGCCAGCGATACTGGGCTT---G-T---GCTG---ATGTGCTGATTCAAGGCCAGCGACA
*
768055 TTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTATGCCAATG
121 TTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAAGGCTAGCGATATTGGTCTTATGCCAATG
*
768120 TGCTGATTCAAGGCCAGCAACATTGGTCTTAAAGACAAGGTGGCAATATGCTGATTCAAGGCCAG
186 TGCTGATTCAAGGCCAGCAACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAAGGCCAG
* * *
768185 CGATATTGGTCTTATGCCAATGTGCT-GATTCAAGGCCAGCAACATTGGTCTTAAAGA-CA
251 CGATATTGGGCTTATGCCAATGTG-TAAATTCAAGGCCAGCAACATTGGTCTTAAAGATAA
768244 AGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTCAAGATGGAAAAGGTGCCAATATGC
1 AGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACT-AA-AT-GAAAAGGTGCCAATATGC
*
768309 TGATTCAAGGCCAGCGATACTGGGCTTGTGCTGATGTGCTAATTCAAGGCCAGCGACATTGGTCT
63 TGATTCAAGGCCAGCGATACTGGGCTTGTGCTGATGTGCTGATTCAAGGCCAGCGACATTGGTCT
* *
768374 TAAAGACAAGGTGCCAATATGCTAATTCAAGGCTAGCGATATTGTTCTTATGCCAATGTGCTGAT
128 TAAAGACAAGGTGCCAATATGCTGATTCAAGGCTAGCGATATTGGTCTTATGCCAATGTGCTGAT
* *
768439 TCAAGGCCAGCAACATTAGTCTTAAAGACAAGGTGCCAATATGCTAATTCAAGGCCAGCGATATT
193 TCAAGGCCAGCAACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATT
768504 GG
258 GG
768506 ACTCAAGATG
Statistics
Matches: 495, Mismatches: 52, Indels: 50
0.83 0.09 0.08
Matches are distributed among these distances:
302 32 0.06
304 1 0.00
305 1 0.00
306 1 0.00
309 1 0.00
310 38 0.08
311 161 0.33
312 218 0.44
313 2 0.00
315 4 0.01
318 1 0.00
319 1 0.00
320 1 0.00
322 33 0.07
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (310 bp):
AGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTAAATGAAAAGGTGCCAATATGCTGA
TTCAAGGCCAGCGATACTGGGCTTGTGCTGATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAA
AGACAAGGTGCCAATATGCTGATTCAAGGCTAGCGATATTGGTCTTATGCCAATGTGCTGATTCA
AGGCCAGCAACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGG
CTTATGCCAATGTGTAAATTCAAGGCCAGCAACATTGGTCTTAAAGATAA
Found at i:768565 original size:43 final size:43
Alignment explanation
Indices: 768518--768662 Score: 173
Period size: 43 Copynumber: 3.2 Consensus size: 43
768508 TCAAGATGGA
* *
768518 AAAGGTGCTAATATGCTGATTCAAGGCCAACGATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * *
768561 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATCGGTCTCAAAGAT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT------T
*
768610 GAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
768653 AAAGGTGCCA
1 AAAGGTGCCA
768663 CGAAGTTATG
Statistics
Matches: 84, Mismatches: 12, Indels: 12
0.78 0.11 0.11
Matches are distributed among these distances:
43 46 0.55
49 38 0.45
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.23
Consensus pattern (43 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
Found at i:768644 original size:92 final size:93
Alignment explanation
Indices: 768468--768662 Score: 295
Period size: 92 Copynumber: 2.1 Consensus size: 93
768458 TCTTAAAGAC
* * *
768468 AAGGTGCCAATATGCTAATTCAAGGCCAGCGATATTGGACTCAAGATGGAAAAGGTGCTAATATG
1 AAGGTGCCAATATGCTAATTCAAGGCCAGCGACATCGGACTCAAGATGG-AAAGGTGCCAATATG
768533 CTGATTCAAGGCCAACGATATTGGACTTA
65 CTGATTCAAGGCCAACGATATTGGACTTA
* * *
768562 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATCGGTCTCAAAGAT-G-AAGGTGCCAATATG
1 AAGGTGCCAATATGCTAATTCAAGGCCAGCGACATCGGACTC-AAGATGGAAAGGTGCCAATATG
*
768625 CTGATTCAAGGCCAGCGATATTGGACTTA
65 CTGATTCAAGGCCAACGATATTGGACTTA
768654 AAGGTGCCA
1 AAGGTGCCA
768663 CGAAGTTATG
Statistics
Matches: 93, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
92 50 0.54
94 38 0.41
95 5 0.05
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.23
Consensus pattern (93 bp):
AAGGTGCCAATATGCTAATTCAAGGCCAGCGACATCGGACTCAAGATGGAAAGGTGCCAATATGC
TGATTCAAGGCCAACGATATTGGACTTA
Found at i:768775 original size:33 final size:32
Alignment explanation
Indices: 768653--769000 Score: 284
Period size: 34 Copynumber: 10.8 Consensus size: 32
768643 TATTGGACTT
* * *
768653 AAAGGTGCCACGAAGTTATGGACTTAAAAAGAA
1 AAAGGTGCCACGGAGTTGTGGACTT-AAAAGGA
**
768686 AAAGAGTGCCATAGAGTTGTGGACTTAAAAGGGA
1 AAAG-GTGCCACGGAGTTGTGGACTTAAAA-GGA
** * *
768720 AAAGGGTGCCATAGAGTCGTGGACATAAAAGGA
1 AAA-GGTGCCACGGAGTTGTGGACTTAAAAGGA
768753 ACAAGGTGCCACGGAGTTGTGGACTTAAAAGG-
1 A-AAGGTGCCACGGAGTTGTGGACTTAAAAGGA
* *
768785 --A--TGCTACGGAGTTGTGGACTTAAAAAGGT
1 AAAGGTGCCACGGAGTTGTGGACTT-AAAAGGA
* ** *
768814 GAAGAGTGCCATAGAGTTGTGGGCTTAAAA-G-
1 AAAG-GTGCCACGGAGTTGTGGACTTAAAAGGA
* * * *
768845 ---GGTTCCACAGAGTTGTGGGCTTTTAAAAAGAA
1 AAAGGTGCCACGGAGTTGTGGAC--TT-AAAAGGA
*
768877 AAAGGTGCCACGGAGTGGTGGACTTAAAAGGA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGA
**
768909 AGAAAATGCCACGGAGTTGTGGACTTAAAAGGAA
1 A-AAGGTGCCACGGAGTTGTGGACTTAAAAGG-A
*
768943 AAAGGGTGCCACGGAGTCGTGGACTTAAAAGGA
1 AAA-GGTGCCACGGAGTTGTGGACTTAAAAGGA
* *
768976 AAAAGTGCCACGGAGTCGTGGACTT
1 AAAGGTGCCACGGAGTTGTGGACTT
769001 TTGGAAAAAG
Statistics
Matches: 262, Mismatches: 31, Indels: 45
0.78 0.09 0.13
Matches are distributed among these distances:
27 36 0.14
28 7 0.03
29 3 0.01
30 4 0.02
31 1 0.00
32 29 0.11
33 75 0.29
34 90 0.34
35 17 0.06
ACGTcount: A:0.35, C:0.13, G:0.32, T:0.20
Consensus pattern (32 bp):
AAAGGTGCCACGGAGTTGTGGACTTAAAAGGA
Found at i:768793 original size:27 final size:26
Alignment explanation
Indices: 768755--768814 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 26
768745 TAAAAGGAAC
768755 AAGGTGCCACGGAGTTGTGGACTTAA
1 AAGGTGCCACGGAGTTGTGGACTTAA
*
768781 AAGGATGCTACGGAGTTGTGGACTTAAA
1 AAGG-TGCCACGGAGTTGTGGACTT-AA
768809 AAGGTG
1 AAGGTG
768815 AAGAGTGCCA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
26 4 0.13
27 21 0.68
28 6 0.19
ACGTcount: A:0.30, C:0.12, G:0.35, T:0.23
Consensus pattern (26 bp):
AAGGTGCCACGGAGTTGTGGACTTAA
Found at i:768974 original size:129 final size:123
Alignment explanation
Indices: 768646--768974 Score: 308
Period size: 128 Copynumber: 2.6 Consensus size: 123
768636 CCAGCGATAT
* * * * *
768646 TGGACTT-AAAGG-TGCCACGAAGTTATGGACTTAAAAAGAAAAAGAGTGCCATAGAGTTGTGGA
1 TGGACTTAAAAGGATGCCACGGAGTTGTGGACTTAAAAAGGAAAAGAGTGCCACAGAGTCGTGGA
* * * * * * * *
768709 CTTAAAAGGGAAAAGGGTGCCATAGAGTCGTGGAC--ATAAAAGGAACAAGGTGCCACGGAGTTG
66 CTT-------AAAAGGGTTCCACAGAGTTGTGGGCTTTTAAAAAGAAAAAGGTGCCACGGAGTGG
* ** * * *
768772 TGGACTTAAAAGGATGCTACGGAGTTGTGGACTTAAAAAGGTGAAGAGTGCCATAGAGTTGTGGG
1 TGGACTTAAAAGGATGCCACGGAGTTGTGGACTTAAAAAGGAAAAGAGTGCCACAGAGTCGTGGA
768837 CTTAAAAGGGTTCCACAGAGTTGTGGGCTTTTAAAAAGAAAAAGGTGCCACGGAGTGG
66 CTTAAAAGGGTTCCACAGAGTTGTGGGCTTTTAAAAAGAAAAAGGTGCCACGGAGTGG
* *
768895 TGGACTTAAAAGGAAGAAAATGCCACGGAGTTGTGGACTT-AAAAGGAAAAAGGGTGCCACGGAG
1 TGGACTTAAAA-G--G---ATGCCACGGAGTTGTGGACTTAAAAAGG-AAAAGAGTGCCACAGAG
768959 TCGTGGACTTAAAAGG
59 TCGTGGACTTAAAAGG
768975 AAAAAGTGCC
Statistics
Matches: 169, Mismatches: 23, Indels: 19
0.80 0.11 0.09
Matches are distributed among these distances:
121 21 0.12
123 35 0.21
124 1 0.01
126 8 0.05
127 5 0.03
128 53 0.31
129 46 0.27
ACGTcount: A:0.35, C:0.12, G:0.32, T:0.20
Consensus pattern (123 bp):
TGGACTTAAAAGGATGCCACGGAGTTGTGGACTTAAAAAGGAAAAGAGTGCCACAGAGTCGTGGA
CTTAAAAGGGTTCCACAGAGTTGTGGGCTTTTAAAAAGAAAAAGGTGCCACGGAGTGG
Found at i:768984 original size:32 final size:32
Alignment explanation
Indices: 768867--769092 Score: 230
Period size: 30 Copynumber: 7.1 Consensus size: 32
768857 TTGTGGGCTT
* *
768867 TTAAAAAGAAAAAGGTGCCACGGAGTGGTGGAC
1 TTAAAAGGAAAAA-GTGCCACGGAGTCGTGGAC
* *
768900 TTAAAAGGAAGAAAATGCCACGGAGTTGTGGAC
1 TTAAAAGGAA-AAAGTGCCACGGAGTCGTGGAC
768933 TTAAAAGGAAAAAGGGTGCCACGGAGTCGTGGAC
1 TTAAAAGGAAAAA--GTGCCACGGAGTCGTGGAC
768967 TTAAAAGGAAAAAGTGCCACGGAGTCGTGGAC
1 TTAAAAGGAAAAAGTGCCACGGAGTCGTGGAC
** * *
768999 TT--TTGGAAAAAGTGCCACAGAGTCATGGAC
1 TTAAAAGGAAAAAGTGCCACGGAGTCGTGGAC
** *
769029 TT--TTGGAAAAAATGCCACGGAGTCGTGGAC
1 TTAAAAGGAAAAAGTGCCACGGAGTCGTGGAC
** *
769059 TT--TTGGAAAAGAGATGCCACTGAGTCGTGGAC
1 TTAAAAGGAAAA-AG-TGCCACGGAGTCGTGGAC
769091 TT
1 TT
769093 GGAGAAGAGA
Statistics
Matches: 174, Mismatches: 14, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
30 61 0.35
31 1 0.01
32 43 0.25
33 36 0.21
34 33 0.19
ACGTcount: A:0.35, C:0.15, G:0.31, T:0.20
Consensus pattern (32 bp):
TTAAAAGGAAAAAGTGCCACGGAGTCGTGGAC
Found at i:768988 original size:66 final size:65
Alignment explanation
Indices: 768867--769092 Score: 250
Period size: 62 Copynumber: 3.5 Consensus size: 65
768857 TTGTGGGCTT
* * *
768867 TTAAAAAGAAAAAGGTGCCACGGAGTGGTGGACTTAAAAGGAAGAAAATGCCACGGAGTTGTGGA
1 TTAAAAGGAAAAAGGTGCCACGGAGTCGTGGACTTAAAAGGAA-AAAATGCCACGGAGTCGTGGA
768932 C
65 C
*
768933 TTAAAAGGAAAAAGGGTGCCACGGAGTCGTGGACTTAAAAGGAAAAAGTGCCACGGAGTCGTGGA
1 TTAAAAGGAAAAA-GGTGCCACGGAGTCGTGGACTTAAAAGGAAAAAATGCCACGGAGTCGTGGA
768998 C
65 C
** * * **
768999 TT--TTGGAAAAA-GTGCCACAGAGTCATGGACTT--TTGGAAAAAATGCCACGGAGTCGTGGAC
1 TTAAAAGGAAAAAGGTGCCACGGAGTCGTGGACTTAAAAGGAAAAAATGCCACGGAGTCGTGGAC
** * *
769059 TT--TTGGAAAAGAGATGCCACTGAGTCGTGGACTT
1 TTAAAAGGAAAA-AGGTGCCACGGAGTCGTGGACTT
769093 GGAGAAGAGA
Statistics
Matches: 143, Mismatches: 14, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
60 35 0.24
61 1 0.01
62 37 0.26
64 7 0.05
66 34 0.24
67 29 0.20
ACGTcount: A:0.35, C:0.15, G:0.31, T:0.20
Consensus pattern (65 bp):
TTAAAAGGAAAAAGGTGCCACGGAGTCGTGGACTTAAAAGGAAAAAATGCCACGGAGTCGTGGAC
Found at i:769014 original size:129 final size:128
Alignment explanation
Indices: 768658--769060 Score: 339
Period size: 129 Copynumber: 3.2 Consensus size: 128
768648 GACTTAAAGG
* * *
768658 TGCCACGAAGTTATGGACTTAAAAAGAAAAAGAGTGCCATAGAGTTGTGGACTTAAAAGGGAAAA
1 TGCCACGGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCATAGAGTTGTGGACTTAAAA-GGAAAA
* *** * *
768723 GGGTGCCATAGAGTCGTGGACATAAAAGGAACAAGGTGCCACGGAGTTGTGGACTTAAAA-G--G
65 --GTGCCACAGAGTCGTGGAC-T-TTTGGAA-AAAGTGCCACGGAGTCGTGGACTTAAAAGGAAG
768785 ---A
125 AAAA
* ** *
768786 TGCTACGGAGTTGTGGACTTAAAAAGG-TGAAGAGTGCCATAGAGTTGTGGGCTTAAAAGG----
1 TGCCACGGAGTTGTGGACTT-AAAAGGAAAAAGAGTGCCATAGAGTTGTGGACTTAAAAGGAAAA
* * * * *
768846 GTTCCACAGAGTTGTGGGCTTTTAAAAAGAAAAAGGTGCCACGGAGTGGTGGACTTAAAAGGAAG
65 GTGCCACAGAGTCGTGGACTTTT----GGAAAAA-GTGCCACGGAGTCGTGGACTTAAAAGGAAG
768911 AAAA
125 AAAA
* ** *
768915 TGCCACGGAGTTGTGGACTTAAAAGGAAAAAGGGTGCCACGGAGTCGTGGACTTAAAAGGAAAAA
1 TGCCACGGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCATAGAGTTGTGGACTTAAAAGG-AAAA
* * * **
768980 GTGCCACGGAGTCGTGGACTTTTGGAAAAAGTGCCACAGAGTCATGGACTT--TTGGAA-AAAA
65 GTGCCACAGAGTCGTGGACTTTTGGAAAAAGTGCCACGGAGTCGTGGACTTAAAAGGAAGAAAA
*
769041 TGCCACGGAGTCGTGGACTT
1 TGCCACGGAGTTGTGGACTT
769061 TTGGAAAAGA
Statistics
Matches: 221, Mismatches: 36, Indels: 38
0.75 0.12 0.13
Matches are distributed among these distances:
120 1 0.00
121 15 0.07
122 2 0.01
123 27 0.12
124 1 0.00
126 24 0.11
127 6 0.03
128 51 0.23
129 69 0.31
130 6 0.03
134 19 0.09
ACGTcount: A:0.34, C:0.13, G:0.32, T:0.21
Consensus pattern (128 bp):
TGCCACGGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCATAGAGTTGTGGACTTAAAAGGAAAAG
TGCCACAGAGTCGTGGACTTTTGGAAAAAGTGCCACGGAGTCGTGGACTTAAAAGGAAGAAAA
Found at i:770332 original size:10 final size:10
Alignment explanation
Indices: 770315--770368 Score: 56
Period size: 11 Copynumber: 5.1 Consensus size: 10
770305 TTTTTTTGTG
770315 TGTTTGTTTTT
1 TGTTT-TTTTT
*
770326 T-TTTGTTTT
1 TGTTTTTTTT
770335 TGTTTTTTTT
1 TGTTTTTTTT
770345 TGGTTTTTTGTT
1 T-GTTTTTT-TT
770357 TGTTCTTTTTT
1 TGTT-TTTTTT
770368 T
1 T
770369 TGACTTTTTC
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
9 5 0.14
10 11 0.30
11 14 0.38
12 7 0.19
ACGTcount: A:0.00, C:0.02, G:0.15, T:0.83
Consensus pattern (10 bp):
TGTTTTTTTT
Found at i:770344 original size:16 final size:16
Alignment explanation
Indices: 770304--770370 Score: 73
Period size: 16 Copynumber: 4.0 Consensus size: 16
770294 GCCTTTGTAC
*
770304 TTTTTTTTGTGTGTTTG
1 TTTTTTTT-TGTTTTTG
770321 TTTTTTTTTGTTTTTG
1 TTTTTTTTTGTTTTTG
770337 TTTTTTTTTGGTTTTTTG
1 TTTTTTTTT-G-TTTTTG
*
770355 TTTGTTCTTT-TTTTTG
1 TTT-TTTTTTGTTTTTG
770371 ACTTTTTCAT
Statistics
Matches: 45, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
16 22 0.49
17 9 0.20
18 9 0.20
19 5 0.11
ACGTcount: A:0.00, C:0.01, G:0.16, T:0.82
Consensus pattern (16 bp):
TTTTTTTTTGTTTTTG
Found at i:770352 original size:18 final size:17
Alignment explanation
Indices: 770304--770370 Score: 75
Period size: 18 Copynumber: 3.9 Consensus size: 17
770294 GCCTTTGTAC
*
770304 TTTTTTTTGTGTGTTTGT
1 TTTTTTTTGT-TTTTTGT
770322 TTTTTTTTG-TTTTTGT
1 TTTTTTTTGTTTTTTGT
770338 TTTTTTTTGGTTTTTTGT
1 TTTTTTTT-GTTTTTTGT
* *
770356 TTGTTCTT-TTTTTTG
1 TTTTTTTTGTTTTTTG
770371 ACTTTTTCAT
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
16 21 0.48
17 1 0.02
18 22 0.50
ACGTcount: A:0.00, C:0.01, G:0.16, T:0.82
Consensus pattern (17 bp):
TTTTTTTTGTTTTTTGT
Found at i:770370 original size:24 final size:24
Alignment explanation
Indices: 770324--770370 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
770314 GTGTTTGTTT
*
770324 TTTTTTGTTTTTGTTTTTTTTTGG
1 TTTTTTGTTTTTGCTTTTTTTTGG
770348 TTTTTTGTTTGTT-CTTTTTTTTG
1 TTTTTTGTTT-TTGCTTTTTTTTG
770371 ACTTTTTCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 19 0.90
25 2 0.10
ACGTcount: A:0.00, C:0.02, G:0.15, T:0.83
Consensus pattern (24 bp):
TTTTTTGTTTTTGCTTTTTTTTGG
Found at i:770376 original size:24 final size:24
Alignment explanation
Indices: 770325--770377 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
770315 TGTTTGTTTT
* **
770325 TTTTTGTTTTTGTTTTTTTTTGGT
1 TTTTTGTTTTTGCTTTTTTTTGAC
770349 TTTTTGTTTGTT-CTTTTTTTTGAC
1 TTTTTGTTT-TTGCTTTTTTTTGAC
770373 TTTTT
1 TTTTT
770378 CATCATTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 23 0.92
25 2 0.08
ACGTcount: A:0.02, C:0.04, G:0.13, T:0.81
Consensus pattern (24 bp):
TTTTTGTTTTTGCTTTTTTTTGAC
Found at i:770377 original size:34 final size:35
Alignment explanation
Indices: 770297--770377 Score: 85
Period size: 34 Copynumber: 2.3 Consensus size: 35
770287 TGATTTTGCC
* *
770297 TTTGTACTTTTTTTTGTGTGTTTGTTTTTTTTTGTT
1 TTTG-ACTTTTTTTGGTGTGTTTGTTTTTCTTTGTT
** *
770333 TTTGTTTTTTTTTGGT-TTTTTGTTTGTTCTTT-TT
1 TTTGACTTTTTTTGGTGTGTTTGTTT-TTCTTTGTT
770367 TTTGACTTTTT
1 TTTGACTTTTT
770378 CATCATTTTT
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
34 19 0.51
35 14 0.38
36 4 0.11
ACGTcount: A:0.02, C:0.04, G:0.15, T:0.79
Consensus pattern (35 bp):
TTTGACTTTTTTTGGTGTGTTTGTTTTTCTTTGTT
Found at i:778097 original size:20 final size:20
Alignment explanation
Indices: 778072--778126 Score: 101
Period size: 20 Copynumber: 2.8 Consensus size: 20
778062 ATTTGCCTAC
*
778072 ATGTATCGATACATTGAATA
1 ATGTATCAATACATTGAATA
778092 ATGTATCAATACATTGAATA
1 ATGTATCAATACATTGAATA
778112 ATGTATCAATACATT
1 ATGTATCAATACATT
778127 TCCATGGCAG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.36
Consensus pattern (20 bp):
ATGTATCAATACATTGAATA
Found at i:779953 original size:10 final size:10
Alignment explanation
Indices: 779938--779963 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
779928 TTCATCAACA
779938 AAATTCCATC
1 AAATTCCATC
779948 AAATTCCATC
1 AAATTCCATC
779958 AAATTC
1 AAATTC
779964 TCCTTCCAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.42, C:0.27, G:0.00, T:0.31
Consensus pattern (10 bp):
AAATTCCATC
Found at i:783481 original size:20 final size:20
Alignment explanation
Indices: 783431--783482 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
783421 CTATGATTTT
*
783431 TATCGATACAATTAGTGAATG
1 TATCGATAC-ATAAGTGAATG
* *
783452 TATTGGTACATAAGTGAATG
1 TATCGATACATAAGTGAATG
783472 TATCGATACAT
1 TATCGATACAT
783483 GTCTCAAATG
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 19 0.73
21 7 0.27
ACGTcount: A:0.37, C:0.10, G:0.19, T:0.35
Consensus pattern (20 bp):
TATCGATACATAAGTGAATG
Found at i:787162 original size:13 final size:13
Alignment explanation
Indices: 787144--787209 Score: 90
Period size: 13 Copynumber: 5.5 Consensus size: 13
787134 TGATACATGG
787144 TACATTGTATCGA
1 TACATTGTATCGA
787157 TACATTGTATCGA
1 TACATTGTATCGA
787170 TACATTGTATCGA
1 TACATTGTATCGA
787183 TACA-TG-AT-G-
1 TACATTGTATCGA
787192 -A-ATTGTATCGA
1 TACATTGTATCGA
787203 TACATTG
1 TACATTG
787210 CTTCTAACGA
Statistics
Matches: 47, Mismatches: 0, Indels: 12
0.80 0.00 0.20
Matches are distributed among these distances:
7 1 0.02
8 3 0.06
9 2 0.04
10 2 0.04
11 2 0.04
12 3 0.06
13 34 0.72
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.38
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:787173 original size:26 final size:23
Alignment explanation
Indices: 787128--787209 Score: 86
Period size: 20 Copynumber: 3.7 Consensus size: 23
787118 CTACCACTGT
*
787128 TTGTATTGATACA-TG--GTACA
1 TTGTATCGATACATTGATGTACA
787148 TTGTATCGATACATTGTATCGATACA
1 TTGTATCGATACATTG-AT-G-TACA
787174 TTGTATCGATACA-TGATG-A-A
1 TTGTATCGATACATTGATGTACA
787194 TTGTATCGATACATTG
1 TTGTATCGATACATTG
787210 CTTCTAACGA
Statistics
Matches: 54, Mismatches: 1, Indels: 13
0.79 0.01 0.19
Matches are distributed among these distances:
20 26 0.48
21 5 0.09
23 1 0.02
24 2 0.04
25 3 0.06
26 17 0.31
ACGTcount: A:0.30, C:0.12, G:0.18, T:0.39
Consensus pattern (23 bp):
TTGTATCGATACATTGATGTACA
Found at i:793346 original size:13 final size:13
Alignment explanation
Indices: 793328--793364 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
793318 ATATTCCTTG
793328 TATCGATACATTA
1 TATCGATACATTA
*
793341 TATCGATATATTA
1 TATCGATACATTA
793354 TATCGATACAT
1 TATCGATACAT
793365 GGATTACTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.38, C:0.14, G:0.08, T:0.41
Consensus pattern (13 bp):
TATCGATACATTA
Found at i:795228 original size:33 final size:33
Alignment explanation
Indices: 795191--795253 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 33
795181 TTGAAAATAA
* *
795191 ATTTTTCTCTAGGGGGAGAAAATCATTTTATTT
1 ATTTTTATCTAGGAGGAGAAAATCATTTTATTT
*
795224 ATTTTTATCTAGGAGGAGAAAATCTTTTTA
1 ATTTTTATCTAGGAGGAGAAAATCATTTTA
795254 ACCGATTATC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.30, C:0.08, G:0.17, T:0.44
Consensus pattern (33 bp):
ATTTTTATCTAGGAGGAGAAAATCATTTTATTT
Found at i:795984 original size:13 final size:13
Alignment explanation
Indices: 795966--796019 Score: 66
Period size: 13 Copynumber: 4.6 Consensus size: 13
795956 CGATACATGG
795966 TACATTGTATCGA
1 TACATTGTATCGA
795979 TACATTGTATCGA
1 TACATTGTATCGA
795992 TACA-TG-AT-G-
1 TACATTGTATCGA
796001 -A-ATTGTATCGA
1 TACATTGTATCGA
796012 TACATTGT
1 TACATTGT
796020 TTTTAACGGC
Statistics
Matches: 35, Mismatches: 0, Indels: 12
0.74 0.00 0.26
Matches are distributed among these distances:
7 1 0.03
8 3 0.09
9 2 0.06
10 2 0.06
11 2 0.06
12 3 0.09
13 22 0.63
ACGTcount: A:0.31, C:0.13, G:0.17, T:0.39
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:795992 original size:33 final size:33
Alignment explanation
Indices: 795950--796019 Score: 115
Period size: 33 Copynumber: 2.1 Consensus size: 33
795940 CTACCACTGT
*
795950 TTGTATCGATACATGGT-ACATTGTATCGATACA
1 TTGTATCGATACATGATGA-ATTGTATCGATACA
795983 TTGTATCGATACATGATGAATTGTATCGATACA
1 TTGTATCGATACATGATGAATTGTATCGATACA
796016 TTGT
1 TTGT
796020 TTTTAACGGC
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
33 34 0.97
34 1 0.03
ACGTcount: A:0.30, C:0.13, G:0.19, T:0.39
Consensus pattern (33 bp):
TTGTATCGATACATGATGAATTGTATCGATACA
Found at i:797672 original size:15 final size:15
Alignment explanation
Indices: 797652--797697 Score: 60
Period size: 15 Copynumber: 3.2 Consensus size: 15
797642 ACTTTATTTC
*
797652 TTTCTTTTTCTTTCT
1 TTTCTTTTTCTCTCT
797667 TTTC--TTTCTCTCT
1 TTTCTTTTTCTCTCT
*
797680 TTTCTTTTCCTCTCT
1 TTTCTTTTTCTCTCT
797695 TTT
1 TTT
797698 TTCAGCTGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 12 0.44
15 15 0.56
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (15 bp):
TTTCTTTTTCTCTCT
Found at i:797693 original size:17 final size:18
Alignment explanation
Indices: 797662--797700 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
797652 TTTCTTTTTC
*
797662 TTTCTTTTCTTTCTCTCT
1 TTTCTTTTCTCTCTCTCT
*
797680 TTTCTTTTC-CTCTCTTT
1 TTTCTTTTCTCTCTCTCT
797697 TTTC
1 TTTC
797701 AGCTGAACCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTCTTTTCTCTCTCTCT
Found at i:798514 original size:151 final size:151
Alignment explanation
Indices: 798344--798621 Score: 425
Period size: 151 Copynumber: 1.8 Consensus size: 151
798334 TGAAAAACTC
*
798344 ATGAAAATGAATGAATTTTTGAAAACTAATTTAATATGAAATAAATAATAAAATTTGAT-AGATT
1 ATGAAAATGAATGAATTTTTAAAAACTAATTTAATATGAAATAAATAATAAAATTTGATGA-ATT
* * * * *
798408 TTAAAAATTAAAAACTAA-AAAAATCCCCCCAAAAAATTTATGGAGTAAAAAACTTCATTTTTCG
65 TTAAAAATTAAAAA-AAAGAAAAATCCACCAAAAAAATTTATGGAGTAAAAAACTCCATATTTCG
798472 AGAACAAAAAATTTCAAGAAAAA
129 AGAACAAAAAATTTCAAGAAAAA
* * *
798495 ATGAAAATGAATGAATTTTTAAAAATTTATTTAATATGAAATAAATAATAATATTTGATGAATTT
1 ATGAAAATGAATGAATTTTTAAAAACTAATTTAATATGAAATAAATAATAAAATTTGATGAATTT
* *
798560 TAAAAATTAAAAAAAAGAAAAATGCACCAAAAAAATTTATGGAGTAGAAAACTCCATATTTC
66 TAAAAATTAAAAAAAAGAAAAATCCACCAAAAAAATTTATGGAGTAAAAAACTCCATATTTC
798622 AAAAATAGGA
Statistics
Matches: 114, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
150 2 0.02
151 111 0.97
152 1 0.01
ACGTcount: A:0.53, C:0.07, G:0.09, T:0.31
Consensus pattern (151 bp):
ATGAAAATGAATGAATTTTTAAAAACTAATTTAATATGAAATAAATAATAAAATTTGATGAATTT
TAAAAATTAAAAAAAAGAAAAATCCACCAAAAAAATTTATGGAGTAAAAAACTCCATATTTCGAG
AACAAAAAATTTCAAGAAAAA
Found at i:803318 original size:13 final size:13
Alignment explanation
Indices: 803296--803353 Score: 53
Period size: 13 Copynumber: 4.0 Consensus size: 13
803286 GGTAGTAGCT
*
803296 TTGTAGCGATACA
1 TTGTATCGATACA
803309 TTGTATCGATACAACA
1 TTGTATCGAT---ACA
803325 CTTATGTATCGATACA
1 --T-TGTATCGATACA
803341 TTGTATCGATACA
1 TTGTATCGATACA
803354 ACACTTATGT
Statistics
Matches: 38, Mismatches: 1, Indels: 12
0.75 0.02 0.24
Matches are distributed among these distances:
13 21 0.55
14 1 0.03
16 6 0.16
18 1 0.03
19 9 0.24
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:803334 original size:19 final size:19
Alignment explanation
Indices: 803310--803394 Score: 92
Period size: 19 Copynumber: 4.7 Consensus size: 19
803300 AGCGATACAT
803310 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
803329 TGTATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
803342 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
* *
803361 TGTATCGATACATTCACTATT
1 TGTATCGATACA-ACACT-TA
803382 TGTATCGATACAA
1 TGTATCGATACAA
803395 ATTGTTAAAA
Statistics
Matches: 55, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
13 9 0.16
14 1 0.02
16 6 0.11
18 1 0.02
19 21 0.38
20 4 0.07
21 13 0.24
ACGTcount: A:0.34, C:0.19, G:0.12, T:0.35
Consensus pattern (19 bp):
TGTATCGATACAACACTTA
Found at i:803343 original size:32 final size:32
Alignment explanation
Indices: 803297--803374 Score: 147
Period size: 32 Copynumber: 2.4 Consensus size: 32
803287 GTAGTAGCTT
*
803297 TGTAGCGATACATTGTATCGATACAACACTTA
1 TGTATCGATACATTGTATCGATACAACACTTA
803329 TGTATCGATACATTGTATCGATACAACACTTA
1 TGTATCGATACATTGTATCGATACAACACTTA
803361 TGTATCGATACATT
1 TGTATCGATACATT
803375 CACTATTTGT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 45 1.00
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (32 bp):
TGTATCGATACATTGTATCGATACAACACTTA
Found at i:804291 original size:49 final size:48
Alignment explanation
Indices: 804142--804999 Score: 517
Period size: 48 Copynumber: 18.6 Consensus size: 48
804132 GATAATGTGT
* * * * * ** *
804142 TGATTCATGGCCAGCGACATTAGACTTGAAGAAGAA-TGCCAATGCGT
1 TGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGTGCCAATATGC
** * * * *
804189 TGAGACAAGGCCAGCGACATTGGGCTTAGGAATGTTAAAGATGCCAATATGC
1 TGATTCAAGGCCAGCGATATTGGACTTA--AA-GATGAAG-TGCCAATATGC
* * * * *
804241 TGATTCAAGGCCAACGATATCGAACTTAAAGATGAAGATACCAATGTGC
1 TGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAG-TGCCAATATGC
*
804290 TGATTCAAGGCC-GACGACATTGGACTT-AA-A-G--GTGCCAATATGC
1 TGATTCAAGGCCAG-CGATATTGGACTTAAAGATGAAGTGCCAATATGC
* * *
804333 TAATTCAAGGCCAGCGATAGTGGACTTAAAGATGAAGACTGCCAATGTGC
1 TGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAG--TGCCAATATGC
* * * *
804383 TGATTTAAGGCCAGCGACATTGG--TTTAA-A-G--GTGCCAATATAC
1 TGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGTGCCAATATGC
* * *
804425 TAATTCAAGGCCAACGATATTGGACTTAAAGATGAAGGTGCCGATATGC
1 TGATTCAAGGCCAGCGATATTGGACTTAAAGATGAA-GTGCCAATATGC
* *
804474 TGATTCAAGGCCAGCGACATTGGACTTAAAGATGATGTGCCAATATGC
1 TGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGTGCCAATATGC
* * * * * *
804522 TGATTCAAGGCCAGCGACATTGGGCTTAAAGATGGTTGAGGTGCCGATGTGA
1 TGATTCAAGGCCAGCGATATTGGACTTAAAGA----TGAAGTGCCAATATGC
* * * * *
804574 TGATTCAAGTCCAACGATATCGGTCTTAAAGATAAAGGTGCCAATATGC
1 TGATTCAAGGCCAGCGATATTGGACTTAAAGATGAA-GTGCCAATATGC
* * *
804623 TGATTCAAGGCCAGCGATACTGGGC-T-----T---GTGCCAATGTGC
1 TGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGTGCCAATATGC
* * * * *
804662 TCATTAAAGGCCAGCGACATTGGTCTTAAAGA-CAAGGTGCCAATATGC
1 TGATTCAAGGCCAGCGATATTGGACTTAAAGATGAA-GTGCCAATATGC
* * * * *
804710 TGGTTCAAGGCCAACAATATTGGGC-T-----T--A-TGCCAATGTGC
1 TGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGTGCCAATATGC
* * *
804749 TGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGC
1 TGATTCAAGGCCAGCGATATTGGACTTAAAGATGAA-GTGCCAATATGC
* *
804798 TGATTCAAGGCCAGCGATACTGGGC-T-----T---GTGCCAATATGC
1 TGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGTGCCAATATGC
* * * *
804837 TGATTCAAGGCCAGCAACATTGGTCTTAAAGA-CAAGGTGCCAATATGC
1 TGATTCAAGGCCAGCGATATTGGACTTAAAGATGAA-GTGCCAATATGC
*
804885 TGATTCAAGGCCAGCGATATTAGG-C-------T-AA-TGCCAAAATGC
1 TGATTCAAGGCCAGCGATATT-GGACTTAAAGATGAAGTGCCAATATGC
* * * * *
804924 TGATTCAAGGCTAGCGACATTGGTCTTAGAGA-GAAGGTGCCAATATGT
1 TGATTCAAGGCCAGCGATATTGGACTTAAAGATGAA-GTGCCAATATGC
* *
804972 TGATTCAAGGCCAACGATATTGGGCTTA
1 TGATTCAAGGCCAGCGATATTGGACTTA
805000 TGCCAAAGTG
Statistics
Matches: 630, Mismatches: 111, Indels: 139
0.72 0.13 0.16
Matches are distributed among these distances:
38 2 0.00
39 124 0.20
40 3 0.00
41 3 0.00
42 28 0.04
43 33 0.05
44 9 0.01
45 3 0.00
46 6 0.01
47 26 0.04
48 147 0.23
49 144 0.23
50 34 0.05
52 68 0.11
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.25
Consensus pattern (48 bp):
TGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGTGCCAATATGC
Found at i:804411 original size:92 final size:92
Alignment explanation
Indices: 804223--804555 Score: 427
Period size: 92 Copynumber: 3.6 Consensus size: 92
804213 CTTAGGAATG
* * * * *
804223 TTAAAGATGCCAATATGCTGATTCAAGGCCAACGATATCGAACTTAAAGATGAAGATACCAATGT
1 TTAAAGGTGCCAATATGCTAATTCAAGGCCAACGATATTGGACTTAAAGATGAAGATGCCAATGT
*
804288 GCTGATTCAAGGCC-GACGACATTGGAC
66 GCTGATTCAAGGCCAG-CGACATTGGAT
* *
804315 TTAAAGGTGCCAATATGCTAATTCAAGGCCAGCGATAGTGGACTTAAAGATGAAGACTGCCAATG
1 TTAAAGGTGCCAATATGCTAATTCAAGGCCAACGATATTGGACTTAAAGATGAAGA-TGCCAATG
*
804380 TGCTGATTTAAGGCCAGCGACATTGG-T
65 TGCTGATTCAAGGCCAGCGACATTGGAT
* * * *
804407 TTAAAGGTGCCAATATACTAATTCAAGGCCAACGATATTGGACTTAAAGATGAAGGTGCCGATAT
1 TTAAAGGTGCCAATATGCTAATTCAAGGCCAACGATATTGGACTTAAAGATGAAGATGCCAATGT
804472 GCTGATTCAAGGCCAGCGACATTGGACT
66 GCTGATTCAAGGCCAGCGACATTGGA-T
* * * * *
804500 TAAAGATGATGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGGCTTAAAGATG
1 TTAA-A-G--GTGCCAATATGCTAATTCAAGGCCAACGATATTGGACTTAAAGATG
804556 GTTGAGGTGC
Statistics
Matches: 211, Mismatches: 22, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
91 31 0.15
92 102 0.48
93 34 0.16
94 2 0.01
95 1 0.00
97 41 0.19
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.24
Consensus pattern (92 bp):
TTAAAGGTGCCAATATGCTAATTCAAGGCCAACGATATTGGACTTAAAGATGAAGATGCCAATGT
GCTGATTCAAGGCCAGCGACATTGGAT
Found at i:804717 original size:87 final size:87
Alignment explanation
Indices: 804563--805047 Score: 673
Period size: 87 Copynumber: 5.5 Consensus size: 87
804553 ATGGTTGAGG
* * * * * *
804563 TGCCGATGTGATGATTCAAGTCCAACGATATCGGTCTTAAAGATAAAGGTGCCAATATGCTGATT
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGA-AAAGGTGCCAATATGCTGATT
* *
804628 CAAGGCCAGCGATACTGGGCTTG
65 CAAGGCCAGCGATATTGGGCTTA
* * * *
804651 TGCCAATGTGCTCATTAAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGGTTC
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGAAAAGGTGCCAATATGCTGATTC
* *
804716 AAGGCCAACAATATTGGGCTTA
66 AAGGCCAGCGATATTGGGCTTA
804738 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATT
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGA-AAAGGTGCCAATATGCTGATT
* *
804803 CAAGGCCAGCGATACTGGGCTTG
65 CAAGGCCAGCGATATTGGGCTTA
* * *
804826 TGCCAATATGCTGATTCAAGGCCAGCAACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTC
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGAAAAGGTGCCAATATGCTGATTC
* *
804891 AAGGCCAGCGATATTAGGCTAA
66 AAGGCCAGCGATATTGGGCTTA
** * * * *
804913 TGCCAAAATGCTGATTCAAGGCTAGCGACATTGGTCTTAGAGAGAAGGTGCCAATATGTTGATTC
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGAAAAGGTGCCAATATGCTGATTC
*
804978 AAGGCCAACGATATTGGGCTTA
66 AAGGCCAGCGATATTGGGCTTA
* *
805000 TGCCAAAGTGCTGATTCAAGGCCAGCGACATTGATCTTAAAGATAAAG
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGA-AAAG
805048 AAAGGTGACA
Statistics
Matches: 352, Mismatches: 43, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
87 235 0.67
88 117 0.33
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (87 bp):
TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGAAAAGGTGCCAATATGCTGATTC
AAGGCCAGCGATATTGGGCTTA
Found at i:804756 original size:39 final size:39
Alignment explanation
Indices: 804699--805032 Score: 220
Period size: 39 Copynumber: 7.8 Consensus size: 39
804689 AAAGACAAGG
* * *
804699 TGCCAATATGCTGGTTCAAGGCCAACAATATTGGGCTTA
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTA
* * *
804738 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAA
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGGC-T-----T--A
* *
804785 GGTGCCAATATGCTGATTCAAGGCCAGCGATACTGGGCTTG
1 --TGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTA
* * *
804826 TGCCAATATGCTGATTCAAGGCCAGCAACATTGGTCTTAAAGACAA
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT-------A
* *
804872 GGTGCCAATATGCTGATTCAAGGCCAGCGATATTAGGCTAA
1 --TGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTA
* * * *
804913 TGCCAAAATGCTGATTCAAGGCTAGCGACATTGGTCTTAGAGAGAA
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT-------A
* *
804959 GGTGCCAATATGTTGATTCAAGGCCAACGATATTGGGCTTA
1 --TGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTA
*
805000 TGCCAA-AGTGCTGATTCAAGGCCAGCGACATTG
1 TGCCAATA-TGCTGATTCAAGGCCAGCGATATTG
805033 ATCTTAAAGA
Statistics
Matches: 230, Mismatches: 36, Indels: 58
0.71 0.11 0.18
Matches are distributed among these distances:
38 1 0.00
39 124 0.54
40 1 0.00
41 2 0.01
43 1 0.00
45 1 0.00
46 1 0.00
47 1 0.00
48 66 0.29
49 32 0.14
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (39 bp):
TGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTA
Found at i:804865 original size:175 final size:175
Alignment explanation
Indices: 804563--805042 Score: 712
Period size: 175 Copynumber: 2.7 Consensus size: 175
804553 ATGGTTGAGG
* * * * * *
804563 TGCCGATGTGATGATTCAAGTCCAACGATATCGGTCTTAAAGATAAAGGTGCCAATATGCTGATT
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATT
* * *
804628 CAAGGCCAGCGATACTGGGCTTGTGCCAATGTGCTCATTAAAGGCCAGCGACATTGGTCTTAAAG
66 CAAGGCCAGCGATACTGGGCTTGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAG
* * *
804693 ACAAGGTGCCAATATGCTGGTTCAAGGCCAACAATATTGGGCTTA
131 ACAAGGTGCCAATATGCTGATTCAAGGCCAACAATATTAGGCTAA
804738 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATT
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATT
*
804803 CAAGGCCAGCGATACTGGGCTTGTGCCAATATGCTGATTCAAGGCCAGCAACATTGGTCTTAAAG
66 CAAGGCCAGCGATACTGGGCTTGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAG
* *
804868 ACAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTAGGCTAA
131 ACAAGGTGCCAATATGCTGATTCAAGGCCAACAATATTAGGCTAA
** * * * *
804913 TGCCAAAATGCTGATTCAAGGCTAGCGACATTGGTCTTAGAGA-GAAGGTGCCAATATGTTGATT
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATT
* * * *
804977 CAAGGCCAACGATATTGGGCTTATGCCAA-AGTGCTGATTCAAGGCCAGCGACATTGATCTTAAA
66 CAAGGCCAGCGATACTGGGCTTGTGCCAATA-TGCTGATTCAAGGCCAGCGACATTGGTCTTAAA
805041 GA
130 GA
805043 TAAAGAAAGG
Statistics
Matches: 278, Mismatches: 26, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
173 1 0.00
174 78 0.28
175 199 0.72
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (175 bp):
TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATT
CAAGGCCAGCGATACTGGGCTTGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAG
ACAAGGTGCCAATATGCTGATTCAAGGCCAACAATATTAGGCTAA
Found at i:806334 original size:15 final size:15
Alignment explanation
Indices: 806316--806359 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
806306 ATCCGGACCC
806316 TTTTTGTTGTTG-TT
1 TTTTTGTTGTTGTTT
806330 TTTTTGTTTGTT-TTT
1 TTTTTG-TTGTTGTTT
806345 TTTTTGTT-TTGTTT
1 TTTTTGTTGTTGTTT
806359 T
1 T
806360 GTGTTTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
13 2 0.07
14 12 0.44
15 13 0.48
ACGTcount: A:0.00, C:0.00, G:0.16, T:0.84
Consensus pattern (15 bp):
TTTTTGTTGTTGTTT
Found at i:806340 original size:12 final size:11
Alignment explanation
Indices: 806325--806372 Score: 69
Period size: 12 Copynumber: 4.2 Consensus size: 11
806315 CTTTTTGTTG
806325 TTGTTTTTTTGT
1 TTGTTTTTTT-T
806337 TTGTTTTTTTT
1 TTGTTTTTTTT
806348 TTGTTTTGTTTT
1 TTGTTTT-TTTT
*
806360 GTGTTTTTTTT
1 TTGTTTTTTTT
806371 TT
1 TT
806373 TTGCGGAGGA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
11 13 0.39
12 20 0.61
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (11 bp):
TTGTTTTTTTT
Found at i:806351 original size:23 final size:23
Alignment explanation
Indices: 806316--806372 Score: 71
Period size: 23 Copynumber: 2.4 Consensus size: 23
806306 ATCCGGACCC
* *
806316 TTTTTGTTGTTGTTTT-TTTGTTTG
1 TTTTT-TTTTTGTTTTGTTT-TGTG
806340 TTTTTTTTTTGTTTTGTTTTGTG
1 TTTTTTTTTTGTTTTGTTTTGTG
806363 TTTTTTTTTT
1 TTTTTTTTTT
806373 TTGCGGAGGA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
23 22 0.73
24 8 0.27
ACGTcount: A:0.00, C:0.00, G:0.16, T:0.84
Consensus pattern (23 bp):
TTTTTTTTTTGTTTTGTTTTGTG
Found at i:806356 original size:20 final size:20
Alignment explanation
Indices: 806328--806375 Score: 71
Period size: 21 Copynumber: 2.4 Consensus size: 20
806318 TTTGTTGTTG
*
806328 TTTTTTTG-TTTGTTTTTTT
1 TTTTTTTGTTTTGTGTTTTT
806347 TTTGTTTTGTTTTGTGTTTTT
1 TTT-TTTTGTTTTGTGTTTTT
806368 TTTTTTTG
1 TTTTTTTG
806376 CGGAGGACGC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 3 0.12
20 10 0.38
21 13 0.50
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (20 bp):
TTTTTTTGTTTTGTGTTTTT
Found at i:806369 original size:15 final size:15
Alignment explanation
Indices: 806316--806375 Score: 59
Period size: 16 Copynumber: 3.7 Consensus size: 15
806306 ATCCGGACCC
806316 TTTTTGTTGTTGTTTTT
1 TTTTTGTT-TTG-TTTT
*
806333 TTGTTTGTTTTTTTTT
1 TT-TTTGTTTTGTTTT
806349 TGTTTTGTTTTGTGTTT
1 T-TTTTGTTTTGT-TTT
806366 TTTTT-TTTTG
1 TTTTTGTTTTG
806376 CGGAGGACGC
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
15 5 0.13
16 18 0.47
17 9 0.24
18 6 0.16
ACGTcount: A:0.00, C:0.00, G:0.17, T:0.83
Consensus pattern (15 bp):
TTTTTGTTTTGTTTT
Found at i:806369 original size:25 final size:26
Alignment explanation
Indices: 806316--806375 Score: 79
Period size: 25 Copynumber: 2.3 Consensus size: 26
806306 ATCCGGACCC
* *
806316 TTTTTGTTGTTGTTTTTTTGTTTGTT
1 TTTTTTTTGTTGTTGTTTTGTTTGTT
806342 TTTTTTTTGTT-TTGTTTTGTGTT-TT
1 TTTTTTTTGTTGTTGTTTTGT-TTGTT
806367 TTTTTTTTG
1 TTTTTTTTG
806376 CGGAGGACGC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
25 19 0.61
26 12 0.39
ACGTcount: A:0.00, C:0.00, G:0.17, T:0.83
Consensus pattern (26 bp):
TTTTTTTTGTTGTTGTTTTGTTTGTT
Found at i:806370 original size:11 final size:11
Alignment explanation
Indices: 806316--806370 Score: 56
Period size: 12 Copynumber: 4.7 Consensus size: 11
806306 ATCCGGACCC
*
806316 TTTTTGTTGTTG
1 TTTTTTTTG-TG
*
806328 TTTTTTTGTTTG
1 TTTTTTT-TGTG
*
806340 TTTTTTTTTTG
1 TTTTTTTTGTG
806351 TTTTGTTTTGTG
1 TTTT-TTTTGTG
806363 TTTTTTTT
1 TTTTTTTT
806371 TTTTGCGGAG
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
11 12 0.32
12 25 0.66
13 1 0.03
ACGTcount: A:0.00, C:0.00, G:0.16, T:0.84
Consensus pattern (11 bp):
TTTTTTTTGTG
Found at i:815947 original size:16 final size:16
Alignment explanation
Indices: 815926--815959 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
815916 AGTGAGACTG
815926 TGCTGGAAGCAATGGA
1 TGCTGGAAGCAATGGA
815942 TGCTGGAAGCAATGGA
1 TGCTGGAAGCAATGGA
815958 TG
1 TG
815960 AGAAGCTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.29, C:0.12, G:0.38, T:0.21
Consensus pattern (16 bp):
TGCTGGAAGCAATGGA
Found at i:820353 original size:20 final size:19
Alignment explanation
Indices: 820307--820362 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 19
820297 AAAACCCTTA
**
820307 AATGTATCGATACACAATTC
1 AATGTATCGATACA-TGTTC
*
820327 AAAGTATCGATACATGTTGC
1 AATGTATCGATACATGTT-C
820347 AATGTATCGATACATG
1 AATGTATCGATACATG
820363 AAAAAAATGT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
19 2 0.06
20 29 0.94
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (19 bp):
AATGTATCGATACATGTTC
Found at i:820439 original size:13 final size:13
Alignment explanation
Indices: 820421--820446 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
820411 TACAGCAAGT
820421 ATGTATCGATACA
1 ATGTATCGATACA
820434 ATGTATCGATACA
1 ATGTATCGATACA
820447 CAAAAATTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Done.