Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold28
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2815568
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.30
Warning! 166732 characters in sequence are not A, C, G, or T
File 12 of 16
Found at i:1897706 original size:45 final size:43
Alignment explanation
Indices: 1897642--1897760 Score: 114
Period size: 45 Copynumber: 2.7 Consensus size: 43
1897632 GCGTTCTCCG
** *
1897642 CAAAAAAAAAAGATGAAAAAGAAAAAAAAAGAAGAAAAAAATAAA
1 CAAAAAAAAAAGAAAAAAAAGAAAAAAAAA-AA-AAAAAAACAAA
* * *
1897687 CAAAAAAAAAAGAAAAAAAACAACAAACACAACAAAAAAAACAAA
1 CAAAAAAAAAAGAAAAAAAAGAA-AAA-AAAAAAAAAAAAACAAA
*
1897732 CAAACAAAACAAA-AAAAGAAAGAAAAAAA
1 CAAA-AAAA-AAAGAAAAAAAAGAAAAAAA
1897761 GCAACAAAAA
Statistics
Matches: 61, Mismatches: 9, Indels: 9
0.77 0.11 0.11
Matches are distributed among these distances:
44 1 0.02
45 37 0.61
46 17 0.28
47 6 0.10
ACGTcount: A:0.82, C:0.09, G:0.07, T:0.02
Consensus pattern (43 bp):
CAAAAAAAAAAGAAAAAAAAGAAAAAAAAAAAAAAAAAACAAA
Found at i:1897729 original size:18 final size:17
Alignment explanation
Indices: 1897684--1897760 Score: 72
Period size: 17 Copynumber: 4.6 Consensus size: 17
1897674 AGAAAAAAAT
*
1897684 AAAC-AAAAAAA-AAAG
1 AAACAAAAAAAACAAAC
*
1897699 AAA-AAAAACAACAAAC
1 AAACAAAAAAAACAAAC
1897715 ACAACAAAAAAAACAAAC
1 A-AACAAAAAAAACAAAC
*
1897733 AAACAAAACAAAA-AAAG
1 AAACAAAA-AAAACAAAC
*
1897750 AAAGAAAAAAA
1 AAACAAAAAAA
1897761 GCAACAAAAA
Statistics
Matches: 52, Mismatches: 5, Indels: 9
0.79 0.08 0.14
Matches are distributed among these distances:
15 9 0.17
16 7 0.13
17 19 0.37
18 17 0.33
ACGTcount: A:0.83, C:0.13, G:0.04, T:0.00
Consensus pattern (17 bp):
AAACAAAAAAAACAAAC
Found at i:1897770 original size:1 final size:1
Alignment explanation
Indices: 1897643--1897760 Score: 56
Period size: 1 Copynumber: 118.0 Consensus size: 1
1897633 CGTTCTCCGC
* ** * * * * * * *
1897643 AAAAAAAAAAGATGAAAAAGAAAAAAAAAGAAGAAAAAAATAAACAAAAAAAAAAGAAAAAAAAC
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * * * * * * *
1897708 AACAAACACAACAAAAAAAACAAACAAACAAAACAAAAAAAGAAAGAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1897761 GCAACAAAAA
Statistics
Matches: 78, Mismatches: 39, Indels: 0
0.67 0.33 0.00
Matches are distributed among these distances:
1 78 1.00
ACGTcount: A:0.83, C:0.08, G:0.07, T:0.02
Consensus pattern (1 bp):
A
Found at i:1898910 original size:13 final size:13
Alignment explanation
Indices: 1898892--1898917 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1898882 CAATTTTTTG
1898892 TGTATCGATACAT
1 TGTATCGATACAT
1898905 TGTATCGATACAT
1 TGTATCGATACAT
1898918 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1901286 original size:21 final size:20
Alignment explanation
Indices: 1901262--1901308 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
1901252 TTTGATGCTG
1901262 ATTTTGA-TGAAAAACGAAGTT
1 ATTTTGAGTGAAAAAC-AAG-T
**
1901283 ATTTAAAGTGAAAAACAAGT
1 ATTTTGAGTGAAAAACAAGT
1901303 ATTTTG
1 ATTTTG
1901309 CAAAAGATTT
Statistics
Matches: 21, Mismatches: 4, Indels: 3
0.75 0.14 0.11
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.45, C:0.04, G:0.17, T:0.34
Consensus pattern (20 bp):
ATTTTGAGTGAAAAACAAGT
Found at i:1901447 original size:13 final size:13
Alignment explanation
Indices: 1901429--1901467 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
1901419 ATAATCACCC
*
1901429 TGTATCGATACAG
1 TGTATCGATACAA
1901442 TGTATCGATACAA
1 TGTATCGATACAA
1901455 TGTATCGATACAA
1 TGTATCGATACAA
1901468 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1901478 original size:20 final size:20
Alignment explanation
Indices: 1901453--1901531 Score: 77
Period size: 20 Copynumber: 3.7 Consensus size: 20
1901443 GTATCGATAC
1901453 AATGTATCGATACAAAGAAA
1 AATGTATCGATACAAAGAAA
*
1901473 AATGTATCGATACATAGAATTTCCA
1 AATGTATCGATACAAAGAA-----A
* *
1901498 GATGTATCGATACACAGAAA
1 AATGTATCGATACAAAGAAA
*
1901518 CATGTATCGATACA
1 AATGTATCGATACA
1901532 TTTTGGACAT
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
20 32 0.64
25 18 0.36
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAAAGAAA
Found at i:1903549 original size:15 final size:15
Alignment explanation
Indices: 1903529--1903559 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1903519 ATTTCGTTTG
*
1903529 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
1903544 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
1903559 G
1 G
1903560 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:1905392 original size:21 final size:21
Alignment explanation
Indices: 1905363--1905407 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
1905353 AAGTTTTCAT
*
1905363 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
1905383 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
1905405 TTT
1 TTT
1905408 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:1907644 original size:13 final size:13
Alignment explanation
Indices: 1907626--1907651 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1907616 CAATTTTTTG
1907626 TGTATCGATACAT
1 TGTATCGATACAT
1907639 TGTATCGATACAT
1 TGTATCGATACAT
1907652 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1908986 original size:102 final size:101
Alignment explanation
Indices: 1908796--1909408 Score: 760
Period size: 102 Copynumber: 6.0 Consensus size: 101
1908786 ACATTAGCAA
* * * * * * *
1908796 CTTTAAGTCCAATATCGTTGGCCTTAAATCAGCATATCGACACCTTTGTCATCTTTAAGTCCAAT
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAACACATTGGCA-C-TT-TCATCTTTAAGTCCAAT
*
1908861 ATCGCTGGCCTTGAATTAGCATATTGGCACCTTTGTCAT
63 ATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCAT
* * *
1908900 CTTTTAAGTCCAATGTCGTTGGCCTTGAATCAACACATCGACACTTTCATCTTTAAGTCCAATAT
1 C-TTTAAGTCCAATGTCGCTGGCCTTGAATCAACACATTGGCACTTTCATCTTTAAGTCCAATAT
* *
1908965 CGTTGGCCTTGAATCAACATATTGGC-CCATTTGTCAT
65 CGCTGGCCTTGAATCAGCATATTGGCACC-TTTGTCAT
*
1909002 CATTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTTCATCTTTAAGTCCAATAT
1 C-TTTAAGTCCAATGTCGCTGGCCTTGAATCAACACATTGGCACTTTCATCTTTAAGTCCAATAT
*
1909067 CGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
65 CGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCAT
* *
1909104 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATC
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAACACATTGGCACTTTCATCTTTAAGTCCAATATC
* * *
1909169 ACTGGCCTTGAATCAGTATATTAGCACCTTTGTCATT
66 GCTGGCCTTGAATCAGCATATTGGCACCTTTGTCA-T
* * * * *
1909206 TTTTAAATCCAATGTCGCTGGCCTTGAATCAACACATTGGCACCTGCATCTTTATGTCCAATATC
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAACACATTGGCACTTTCATCTTTAAGTCCAATATC
* *
1909271 GCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCAT
66 GCTGGCCTTGAATCAGCATATTGGCACCTTTGTCAT
** * * * *
1909307 CTTTAAAACGCAATGTCGTTGACCTTGAATCAACACATTGGCATTCTTCTCATCTTCAAGTCTAA
1 CTTTAAGTC-CAATGTCGCTGGCCTTGAATCAACACATTGGCA--CTT-TCATCTTTAAGTCCAA
* * * * *
1909372 AAGTCGCTGACCGTGAATCAGCACATTGACATCCTTT
62 TA-TCGCTGGCCTTGAATCAGCATATTGGCA-CCTTT
1909409 TTCTCATCTT
Statistics
Matches: 454, Mismatches: 45, Indels: 17
0.88 0.09 0.03
Matches are distributed among these distances:
101 104 0.23
102 265 0.58
103 4 0.01
104 4 0.01
105 50 0.11
106 23 0.05
107 4 0.01
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.34
Consensus pattern (101 bp):
CTTTAAGTCCAATGTCGCTGGCCTTGAATCAACACATTGGCACTTTCATCTTTAAGTCCAATATC
GCTGGCCTTGAATCAGCATATTGGCACCTTTGTCAT
Found at i:1909178 original size:203 final size:203
Alignment explanation
Indices: 1908797--1909349 Score: 784
Period size: 203 Copynumber: 2.7 Consensus size: 203
1908787 CATTAGCAAC
* * * * * *
1908797 TTTAAGTCCAATATCGTTGGCCTTAAATCAGCATATCGACACCTTTGTCATCTTTAAGTCCAATA
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-C-TT-TCATCTTTAAGTCCAATA
* *
1908862 TCGCTGGCCTTGAATTAGCATATTGGCACCTTTGTCATCTTTTAAGTCCAATGTCGTTGGCCTTG
63 TCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATC-TTTAAGTCCAATGTCGTTGGCCTTG
* * * ** *
1908927 AATCAACACATCGACACTTTCATCTTTAAGTCCAATATCGTTGGCCTTGAATCAACATATTGGC-
127 AATCAACACATTGGCACCTTCATCTTTAAGTCCAATATCACTGGCCTTGAATCAACATATTAGCA
1908991 CCATTTGTCATCA
192 CC-TTTGTCATCA
1909004 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTTCATCTTTAAGTCCAATATCG
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTTCATCTTTAAGTCCAATATCG
*
1909069 CTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATC
66 CTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTCGTTGGCCTTGAATC
* **
1909134 AGCACATTGGCACCTTCATCTTTAAGTCCAATATCACTGGCCTTGAATCAGTATATTAGCACCTT
131 AACACATTGGCACCTTCATCTTTAAGTCCAATATCACTGGCCTTGAATCAACATATTAGCACCTT
**
1909199 TGTCATTT
196 TGTCATCA
* * * * *
1909207 TTTAAATCCAATGTCGCTGGCCTTGAATCAACACATTGGCACCTGCATCTTTATGTCCAATATCG
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTTCATCTTTAAGTCCAATATCG
* ** *
1909272 CTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAAACGCAATGTCGTTGACCTTGAAT
66 CTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTC-CAATGTCGTTGGCCTTGAAT
1909337 CAACACATTGGCA
130 CAACACATTGGCA
1909350 TTCTTCTCAT
Statistics
Matches: 313, Mismatches: 31, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
203 188 0.60
204 87 0.28
205 2 0.01
206 1 0.00
207 35 0.11
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.34
Consensus pattern (203 bp):
TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTTCATCTTTAAGTCCAATATCG
CTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTCGTTGGCCTTGAATC
AACACATTGGCACCTTCATCTTTAAGTCCAATATCACTGGCCTTGAATCAACATATTAGCACCTT
TGTCATCA
Found at i:1910121 original size:19 final size:19
Alignment explanation
Indices: 1910097--1910179 Score: 97
Period size: 19 Copynumber: 4.7 Consensus size: 19
1910087 TTTCAACGAT
*
1910097 TTGTATCGATACATTAGTG
1 TTGTATCGATACATAAGTG
1910116 TTGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
1910135 TTGTATCGATAC--AA---
1 TTGTATCGATACATAAGTG
*
1910149 -TGTATCGATACATAAGTT
1 TTGTATCGATACATAAGTG
*
1910167 TTGTATGGATACA
1 TTGTATCGATACA
1910180 ATGTACTACT
Statistics
Matches: 56, Mismatches: 2, Indels: 12
0.80 0.03 0.17
Matches are distributed among these distances:
13 11 0.20
15 2 0.04
17 2 0.04
19 41 0.73
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (19 bp):
TTGTATCGATACATAAGTG
Found at i:1910153 original size:32 final size:32
Alignment explanation
Indices: 1910117--1910184 Score: 118
Period size: 32 Copynumber: 2.1 Consensus size: 32
1910107 ACATTAGTGT
1910117 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
* *
1910149 TGTATCGATACATAAGTTTTGTATGGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
1910181 TGTA
1 TGTA
1910185 CTACTACGAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.34, C:0.10, G:0.19, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:1910154 original size:13 final size:13
Alignment explanation
Indices: 1910136--1910160 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1910126 ACATAAGTGT
1910136 TGTATCGATACAA
1 TGTATCGATACAA
1910149 TGTATCGATACA
1 TGTATCGATACA
1910161 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1910315 original size:52 final size:52
Alignment explanation
Indices: 1910252--1910380 Score: 222
Period size: 52 Copynumber: 2.5 Consensus size: 52
1910242 CACTGATCTT
*
1910252 TGTATCAATACATGCAGGCAAATTTGCCCAGATATATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATATATCGATACACTATGAAA
* * *
1910304 TGTATCGATACATACAGGTAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATATATCGATACACTATGAAA
1910356 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
1910381 TCATATTTCG
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 71 1.00
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATATATCGATACACTATGAAA
Found at i:1921815 original size:22 final size:22
Alignment explanation
Indices: 1921789--1921862 Score: 89
Period size: 22 Copynumber: 3.4 Consensus size: 22
1921779 AGTTTTCATT
*
1921789 TTTCTCCCCTTTAATTAAAGAA
1 TTTCTCCCCTTTAATCAAAGAA
*
1921811 TTTCTCCCTTTTAATCAAA-ATA
1 TTTCTCCCCTTTAATCAAAGA-A
* *
1921833 TTTCTCCCCCTTAATCAAAGCA
1 TTTCTCCCCTTTAATCAAAGAA
1921855 TTT-TCCCC
1 TTTCTCCCC
1921863 CTTTGTCAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
21 6 0.13
22 39 0.87
ACGTcount: A:0.27, C:0.30, G:0.03, T:0.41
Consensus pattern (22 bp):
TTTCTCCCCTTTAATCAAAGAA
Found at i:1927491 original size:20 final size:20
Alignment explanation
Indices: 1927460--1927516 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
1927450 GTCAAAACCC
*
1927460 TGAAAAGTATCGATACACAT
1 TGAAATGTATCGATACACAT
* *
1927480 TTAAATGTATCGATACAGAT
1 TGAAATGTATCGATACACAT
* *
1927500 TGCATTGTATCGATACA
1 TGAAATGTATCGATACA
1927517 TGACCAAATG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.32
Consensus pattern (20 bp):
TGAAATGTATCGATACACAT
Found at i:1927528 original size:20 final size:21
Alignment explanation
Indices: 1927505--1927557 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
1927495 CAGATTGCAT
**
1927505 TGTATCGATACATGACCA-AA
1 TGTATCGATACATGAAAAGAA
*
1927525 TGTATCGATACTTGAAAAGAA
1 TGTATCGATACATGAAAAGAA
1927546 TGTATCGATACA
1 TGTATCGATACA
1927558 AGTCATTGGC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 15 0.54
21 13 0.46
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (21 bp):
TGTATCGATACATGAAAAGAA
Found at i:1927633 original size:20 final size:20
Alignment explanation
Indices: 1927590--1927641 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
1927580 TAGCCAAACT
**
1927590 TGTATCGATACA-CACAGTA
1 TGTATCGATACATCACAAAA
*
1927609 TGTATCGATACATCATAAAA
1 TGTATCGATACATCACAAAA
1927629 TGTATCGATACAT
1 TGTATCGATACAT
1927642 TGGCTTGTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 12 0.41
20 17 0.59
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.31
Consensus pattern (20 bp):
TGTATCGATACATCACAAAA
Found at i:1930984 original size:33 final size:32
Alignment explanation
Indices: 1930944--1931012 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 32
1930934 CCATTACAAG
1930944 CAATGTATCAATACAATTCAT-CATGTATCGATA
1 CAATGTATCAATAC-ATT-ATACATGTATCGATA
*
1930977 CAATGTATCGATACATTATACCATGTATCGATA
1 CAATGTATCAATACATTATA-CATGTATCGATA
1931010 CAA
1 CAA
1931013 ATAGGGGTAG
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
31 2 0.06
32 3 0.09
33 28 0.85
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (32 bp):
CAATGTATCAATACATTATACATGTATCGATA
Found at i:1930997 original size:20 final size:20
Alignment explanation
Indices: 1930974--1931011 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
1930964 TCATGTATCG
1930974 ATACAATGTATCGATACATT
1 ATACAATGTATCGATACATT
*
1930994 ATACCATGTATCGATACA
1 ATACAATGTATCGATACA
1931012 AATAGGGGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.32
Consensus pattern (20 bp):
ATACAATGTATCGATACATT
Found at i:1931010 original size:13 final size:13
Alignment explanation
Indices: 1930966--1930991 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1930956 ACAATTCATC
1930966 ATGTATCGATACA
1 ATGTATCGATACA
1930979 ATGTATCGATACA
1 ATGTATCGATACA
1930992 TTATACCATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1932608 original size:70 final size:72
Alignment explanation
Indices: 1932463--1932618 Score: 176
Period size: 70 Copynumber: 2.2 Consensus size: 72
1932453 TTTTAACTAG
** * * * * *
1932463 ATGTATCGATACA-TGATTCAATGTATCGATACATCTGGGTAAAAAGATAGAATATATCAATACA
1 ATGTATCGATACATTGATAAAATGTATCAATACATCTGGGCAAAAAGACAGAATATATCAACAAA
*
1932527 TTCATAC
66 TTCATAA
* *
1932534 ATGTATCGATACATTGA-AAAATGTATCAAT-CATCTGGGCAAAAAGACAGAATGTATCGACAAA
1 ATGTATCGATACATTGATAAAATGTATCAATACATCTGGGCAAAAAGACAGAATATATCAACAAA
*
1932597 TTGA-AGA
66 TTCATA-A
1932604 ATGTATCGATACATT
1 ATGTATCGATACATT
1932619 CATACATGCA
Statistics
Matches: 72, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
69 1 0.01
70 45 0.62
71 23 0.32
72 3 0.04
ACGTcount: A:0.42, C:0.13, G:0.16, T:0.29
Consensus pattern (72 bp):
ATGTATCGATACATTGATAAAATGTATCAATACATCTGGGCAAAAAGACAGAATATATCAACAAA
TTCATAA
Found at i:1932631 original size:20 final size:20
Alignment explanation
Indices: 1932603--1932657 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 20
1932593 CAAATTGAAG
* *
1932603 AATGTATCGATACATTCATA
1 AATGCATCGATACATTCAAA
* * *
1932623 CATGCATCGATGCATTGAAA
1 AATGCATCGATACATTCAAA
*
1932643 AATGTATCGATACAT
1 AATGCATCGATACAT
1932658 CTGGGTAAAA
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.38, C:0.16, G:0.15, T:0.31
Consensus pattern (20 bp):
AATGCATCGATACATTCAAA
Found at i:1935472 original size:20 final size:19
Alignment explanation
Indices: 1935427--1935476 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 19
1935417 CATTCAAAGG
*
1935427 TGTATCGATACTATGAACA
1 TGTATCGATACTAAGAACA
* *
1935446 GGTATCGATACTAAGCAATA
1 TGTATCGATACTAAG-AACA
1935466 TGTATCGATAC
1 TGTATCGATAC
1935477 ATCTGAGTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
19 13 0.50
20 13 0.50
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (19 bp):
TGTATCGATACTAAGAACA
Found at i:1938284 original size:53 final size:53
Alignment explanation
Indices: 1938227--1938343 Score: 198
Period size: 53 Copynumber: 2.2 Consensus size: 53
1938217 TGAATCACTC
* *
1938227 TTATGATTTTTGGTGTAGTTTTTGTGATTTTTCATGACCTGTTTAGTGTTAAT
1 TTATGATTTTTGGCGTAGTTTTTGTGATTTTTCATGACCTGTGTAGTGTTAAT
**
1938280 TTATGATTTTTGGCGTAGTTTTTGTGATTTTTCATGATTTGTGTAGTGTTAAT
1 TTATGATTTTTGGCGTAGTTTTTGTGATTTTTCATGACCTGTGTAGTGTTAAT
1938333 TTATGATTTTT
1 TTATGATTTTT
1938344 CTAATATAAG
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
53 60 1.00
ACGTcount: A:0.17, C:0.04, G:0.21, T:0.58
Consensus pattern (53 bp):
TTATGATTTTTGGCGTAGTTTTTGTGATTTTTCATGACCTGTGTAGTGTTAAT
Found at i:1943751 original size:13 final size:13
Alignment explanation
Indices: 1943733--1943771 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
1943723 ATAATCCCCC
*
1943733 TGTATCGATACAG
1 TGTATCGATACAA
1943746 TGTATCGATACAA
1 TGTATCGATACAA
1943759 TGTATCGATACAA
1 TGTATCGATACAA
1943772 AGAATGATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1943815 original size:27 final size:27
Alignment explanation
Indices: 1943777--1943844 Score: 136
Period size: 27 Copynumber: 2.5 Consensus size: 27
1943767 TACAAAGAAT
1943777 GATGTATCGATACATTGAATTTTTCCA
1 GATGTATCGATACATTGAATTTTTCCA
1943804 GATGTATCGATACATTGAATTTTTCCA
1 GATGTATCGATACATTGAATTTTTCCA
1943831 GATGTATCGATACA
1 GATGTATCGATACA
1943845 CTGGAACATG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.38
Consensus pattern (27 bp):
GATGTATCGATACATTGAATTTTTCCA
Found at i:1951198 original size:28 final size:28
Alignment explanation
Indices: 1951148--1951222 Score: 89
Period size: 28 Copynumber: 2.7 Consensus size: 28
1951138 AATAAAGTCG
* * *
1951148 GAGTTGGAATATCCCCTCA-GAAATAACG
1 GAGTTGGAGTATCCCC-GATGAAATAACA
*
1951176 GGGTTGGAGTATCCCCGATGAAATAACA
1 GAGTTGGAGTATCCCCGATGAAATAACA
*
1951204 GAGTTGAAGTATCCCCGAT
1 GAGTTGGAGTATCCCCGAT
1951223 TGTGAAAAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
27 1 0.03
28 39 0.98
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.23
Consensus pattern (28 bp):
GAGTTGGAGTATCCCCGATGAAATAACA
Found at i:1951265 original size:50 final size:52
Alignment explanation
Indices: 1951202--1951320 Score: 170
Period size: 50 Copynumber: 2.3 Consensus size: 52
1951192 GATGAAATAA
* *
1951202 CAGAGTTGAAGTATCCCCGATTGTGAAAAATTGGT-GTTTGA-AAATAAAAT
1 CAGAGTTGGAGTATCCCCGATTGTGAAAAATTGGTAGTTTGAGAAATAAAAC
* *
1951252 CAGAGTTGGAGTATCCCCGATTGTGGAAAATTGGTAGTTTTAGAAATAAAAC
1 CAGAGTTGGAGTATCCCCGATTGTGAAAAATTGGTAGTTTGAGAAATAAAAC
* *
1951304 CGGGGTTGGAGTATCCC
1 CAGAGTTGGAGTATCCC
1951321 TTCGTAAATA
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
50 33 0.54
51 5 0.08
52 23 0.38
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.29
Consensus pattern (52 bp):
CAGAGTTGGAGTATCCCCGATTGTGAAAAATTGGTAGTTTGAGAAATAAAAC
Found at i:1953465 original size:20 final size:20
Alignment explanation
Indices: 1953440--1953484 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
1953430 CCATTGGTTC
1953440 TACAATAAACAATGTATCGA
1 TACAATAAACAATGTATCGA
* *
1953460 TACAATGAACAATGTATTGA
1 TACAATAAACAATGTATCGA
1953480 TACAA
1 TACAA
1953485 ATTGTGAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.49, C:0.13, G:0.11, T:0.27
Consensus pattern (20 bp):
TACAATAAACAATGTATCGA
Found at i:1960146 original size:47 final size:47
Alignment explanation
Indices: 1959982--1960512 Score: 457
Period size: 47 Copynumber: 11.2 Consensus size: 47
1959972 ACCCTCGTTG
* * * ** * *
1959982 GACTGCATTGGCTTTAGGGGCCTAGTCAAA-TCCTTTTTACCCTCGTTT
1 GACTGTATTGGCATTA-GGACCTAGTCAAACT-CTTTCCACTCTCATTT
* ** ** * *
1960030 GACTATATTGGCATTAAAACCT-GCTCAAACTCAAATCCATTCTCGTTT
1 GACTGTATTGGCATTAGGACCTAG-TCAAACTC-TTTCCACTCTCATTT
* * * *
1960078 GACTATATTGGCATTAGGACCTAGTCAAACTCTTTACACTTTCTTTT
1 GACTGTATTGGCATTAGGACCTAGTCAAACTCTTTCCACTCTCATTT
*
1960125 GACTGTATTGGCGA-TACGACCTAGTCAAACTCTTTCCACTCTCATTT
1 GACTGTATTGGC-ATTAGGACCTAGTCAAACTCTTTCCACTCTCATTT
* * ** * *
1960172 GGCTGTATTAGTGTTAGGACCTAGTCAAACTCTTTACACTCTCGTTT
1 GACTGTATTGGCATTAGGACCTAGTCAAACTCTTTCCACTCTCATTT
* * *** * *
1960219 AACTGTATTGGCATTAAGACCTAGTCAAACTCAAAACCATTTTCATTT
1 GACTGTATTGGCATTAGGACCTAGTCAAACTC-TTTCCACTCTCATTT
* **
1960267 GACTGTATTGGCATTA-G-CCACACGTCAAACTCAATCCACTCTCATTT
1 GACTGTATTGGCATTAGGACC-TA-GTCAAACTCTTTCCACTCTCATTT
* * ** *
1960314 -AATCGTATTGGCATTAAGATATAGTCAAACT-TAATCCACTCTCATTT
1 GACT-GTATTGGCATTAGGACCTAGTCAAACTCT-TTCCACTCTCATTT
* * *
1960361 GACTGTATTGGTGA-TAGGACCTATTCAAACTCTTTCCACTCTCGTTT
1 GACTGTATTGG-CATTAGGACCTAGTCAAACTCTTTCCACTCTCATTT
** * *
1960408 GACTACATTGGCGTTAGGACCTAGTCAAACTCTTTACACTCTCATTT
1 GACTGTATTGGCATTAGGACCTAGTCAAACTCTTTCCACTCTCATTT
* **
1960455 GACTGTATTAGCATTAGGACCTAGTCAAACTCTTTCCACTCTTGTTT
1 GACTGTATTGGCATTAGGACCTAGTCAAACTCTTTCCACTCTCATTT
1960502 GACTGTATTGG
1 GACTGTATTGG
1960513 TGTTAACCCT
Statistics
Matches: 388, Mismatches: 78, Indels: 35
0.77 0.16 0.07
Matches are distributed among these distances:
46 5 0.01
47 292 0.75
48 90 0.23
49 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.36
Consensus pattern (47 bp):
GACTGTATTGGCATTAGGACCTAGTCAAACTCTTTCCACTCTCATTT
Found at i:1960324 original size:189 final size:188
Alignment explanation
Indices: 1960002--1960486 Score: 527
Period size: 189 Copynumber: 2.6 Consensus size: 188
1959992 GCTTTAGGGG
* *
1960002 CCTAGTCAAATCCTTTTTAC-C-CTCGTTTGACTATATTGGCATTAAAACCT-GCTCAAACTCAA
1 CCTAGTCAAA--CTCTTTACACTCTCGTTTGACTATATTGGCATTAAGACCTAG-TCAAACTCAA
* * * * ** * * *
1960064 ATCCATTCTCGTTTGACTATATTGGCATTAGGACCTAGTCAAACTCTTTACACTTTCTTTTGACT
63 AACCATTCTCATTTGACTGTATTGGCATTAGCACC-AGTCAAACTCAATACACTCTCATTTAACT
* * * * *
1960129 GTATTGGCGA-TACGACCTAGTCAAACTCT-TTCCACTCTCATTTGGCTGTATTAGTGTTAGGA
127 GTATTGGC-ATTAAGACATAGTCAAACT-TAATCCACTCTCATTTGACTGTATTAGTGATAGGA
* *
1960191 CCTAGTCAAACTCTTTACACTCTCGTTTAACTGTATTGGCATTAAGACCTAGTCAAACTCAAAAC
1 CCTAGTCAAACTCTTTACACTCTCGTTTGACTATATTGGCATTAAGACCTAGTCAAACTCAAAAC
* *
1960256 CATTTTCATTTGACTGTATTGGCATTAGC-CACACGTCAAACTCAATCCACTCTCATTTAA-TCG
66 CATTCTCATTTGACTGTATTGGCATTAGCAC-CA-GTCAAACTCAATACACTCTCATTTAACT-G
* *
1960319 TATTGGCATTAAGATATAGTCAAACTTAATCCACTCTCATTTGACTGTATTGGTGATAGGA
128 TATTGGCATTAAGACATAGTCAAACTTAATCCACTCTCATTTGACTGTATTAGTGATAGGA
* * * * * ***
1960380 CCTATTCAAACTCTTTCCACTCTCGTTTGACTACATTGGCGTTAGGACCTAGTCAAACTCTTTA-
1 CCTAGTCAAACTCTTTACACTCTCGTTTGACTATATTGGCATTAAGACCTAGTCAAACTCAAAAC
* * *
1960444 CACTCTCATTTGACTGTATTAGCATTAGGACCTAGTCAAACTC
66 CATTCTCATTTGACTGTATTGGCATTAGCACC-AGTCAAACTC
1960487 TTTCCACTCT
Statistics
Matches: 250, Mismatches: 36, Indels: 21
0.81 0.12 0.07
Matches are distributed among these distances:
187 7 0.03
188 41 0.16
189 201 0.80
190 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.35
Consensus pattern (188 bp):
CCTAGTCAAACTCTTTACACTCTCGTTTGACTATATTGGCATTAAGACCTAGTCAAACTCAAAAC
CATTCTCATTTGACTGTATTGGCATTAGCACCAGTCAAACTCAATACACTCTCATTTAACTGTAT
TGGCATTAAGACATAGTCAAACTTAATCCACTCTCATTTGACTGTATTAGTGATAGGA
Found at i:1960887 original size:85 final size:84
Alignment explanation
Indices: 1960641--1960949 Score: 263
Period size: 85 Copynumber: 3.7 Consensus size: 84
1960631 TAGTCCCCCA
* * *
1960641 TAAACCC-CTACCCTTATGGTGACCTGTCAGCCCAGTCTCCGGTCAACCTTTATCTCATTGTTTA
1 TAAACCCTTTACCCTTATGGTGACCTGTCAGCCCAGTCTCCGGTCAACCTTCATCTCCTTGTTTA
*
1960705 CCTGTTGGCTT-GATCCTTAG
66 CCTG-TCGCTTAG-TCCTTAG
* * * *** *
1960725 TAAACCCCTTATCCCCT-TGGTGACCTATCAGCTTGGTC-CCTGATCAACCCTTCATC-CCTTGT
1 TAAACCCTTTA-CCCTTATGGTGACCTGTCAGCCCAGTCTCC-GGTCAA-CCTTCATCTCCTTGT
* * *
1960787 TTGCCTATCGACTTAGTCCTTGG
63 TTACCTGTCG-CTTAGTCCTTAG
* * * *
1960810 AAAACCTTTTACCCTTATGGTGACCTGTCAGCCCAGTCTCCGGTCAACCTTCATCTCCGTATTTA
1 TAAACCCTTTACCCTTATGGTGACCTGTCAGCCCAGTCTCCGGTCAACCTTCATCTCCTTGTTTA
* *
1960875 CTTGTCAGCTTAGTCC-CAG
66 CCTGTC-GCTTAGTCCTTAG
* * * * * *
1960894 TAAACCCTTTACACC-TACGGTGACTTGTCAGCTCAATCTCCAGTCAACCTTTATCT
1 TAAACCCTTTAC-CCTTATGGTGACCTGTCAGCCCAGTCTCCGGTCAACCTTCATCT
1960950 TACTATTTAC
Statistics
Matches: 177, Mismatches: 37, Indels: 22
0.75 0.16 0.09
Matches are distributed among these distances:
84 69 0.39
85 93 0.53
86 15 0.08
ACGTcount: A:0.19, C:0.32, G:0.15, T:0.33
Consensus pattern (84 bp):
TAAACCCTTTACCCTTATGGTGACCTGTCAGCCCAGTCTCCGGTCAACCTTCATCTCCTTGTTTA
CCTGTCGCTTAGTCCTTAG
Found at i:1960974 original size:84 final size:85
Alignment explanation
Indices: 1960811--1960996 Score: 184
Period size: 84 Copynumber: 2.2 Consensus size: 85
1960801 AGTCCTTGGA
* * * * *
1960811 AAACCTTTTACCCTTATGGTGACCTGTCAGCCCAGTCTCCGGTCAACCTTCATCTCCGTATTTAC
1 AAACCCTTTACCCTTACGGTGACCTGTCAGCCCAATCTCCAGTCAACCTTCATCTACGTATTTAC
* * *
1960876 TTGTCAGCTTAGTCC-C-AGT
66 CTATCAGCTCAGTCCTCGA-T
* * *
1960895 AAACCCTTTACACC-TACGGTGACTTGTCAGCTCAATCTCCAGTCAACCTTTATCTTAC-TATTT
1 AAACCCTTTAC-CCTTACGGTGACCTGTCAGCCCAATCTCCAGTCAACCTTCATC-TACGTATTT
1960958 ACCTATC-GACTCAGTCCTCGAT
64 ACCTATCAG-CTCAGTCCTCGAT
*
1960980 AAACCCTTCATCCCTTA
1 AAACCCTTTA-CCCTTA
1960997 TTTACTTATC
Statistics
Matches: 83, Mismatches: 12, Indels: 12
0.78 0.11 0.11
Matches are distributed among these distances:
83 1 0.01
84 61 0.73
85 17 0.20
86 4 0.05
ACGTcount: A:0.23, C:0.33, G:0.12, T:0.33
Consensus pattern (85 bp):
AAACCCTTTACCCTTACGGTGACCTGTCAGCCCAATCTCCAGTCAACCTTCATCTACGTATTTAC
CTATCAGCTCAGTCCTCGAT
Found at i:1960997 original size:170 final size:170
Alignment explanation
Indices: 1960642--1960997 Score: 359
Period size: 170 Copynumber: 2.1 Consensus size: 170
1960632 AGTCCCCCAT
* * * *
1960642 AAACCCCT-ACCCTTATGGTGACCTGTCAGCCCAGTCTCCGGTCAACCTTTATCTCATTGTTTAC
1 AAACCCTTCACCCTTATGGTGACCTGTCAGCCCAGTCTCCGGTCAACCTTCATCTCAGTATTTAC
** * * * *** *
1960706 CTGTTGGCTTGATCCTTAGTAAACCCCTTATCCCCTTGGTGACCTATCAGCTTGGTCCCTGATCA
66 CTGTCAGCTTGATCCTCAGTAAACCCCTTATCACCTCGGTGACCTATCAGCTCAATCCCAGATCA
* * * * *
1960771 ACCCTTCATCCCTTGTTTGCCTATCGACTTAGTCCTTGGA
131 ACCCTTCATCACTTATTTACCTATCGACTCAGTCCTTCGA
* * *
1960811 AAACCTTTTACCCTTATGGTGACCTGTCAGCCCAGTCTCCGGTCAACCTTCATCTCCGTATTTAC
1 AAACCCTTCACCCTTATGGTGACCTGTCAGCCCAGTCTCCGGTCAACCTTCATCTCAGTATTTAC
* * * *
1960876 TTGTCAGCTT-AGTCC-CAGTAAACCCTTTA-CACCTACGGTGACTTGTCAGCTCAATCTCCAG-
66 CTGTCAGCTTGA-TCCTCAGTAAACCCCTTATCACCT-CGGTGACCTATCAGCTCAATC-CCAGA
*
1960937 TCAA-CCTTTATCTTAC-TATTTACCTATCGACTCAGTCC-TCGA
128 TCAACCCTTCATC--ACTTATTTACCTATCGACTCAGTCCTTCGA
1960979 TAAACCCTTCATCCCTTAT
1 -AAACCCTTCA-CCCTTAT
1960998 TTACTTATCG
Statistics
Matches: 152, Mismatches: 27, Indels: 15
0.78 0.14 0.08
Matches are distributed among these distances:
168 14 0.09
169 65 0.43
170 73 0.48
ACGTcount: A:0.20, C:0.33, G:0.14, T:0.33
Consensus pattern (170 bp):
AAACCCTTCACCCTTATGGTGACCTGTCAGCCCAGTCTCCGGTCAACCTTCATCTCAGTATTTAC
CTGTCAGCTTGATCCTCAGTAAACCCCTTATCACCTCGGTGACCTATCAGCTCAATCCCAGATCA
ACCCTTCATCACTTATTTACCTATCGACTCAGTCCTTCGA
Found at i:1962271 original size:167 final size:165
Alignment explanation
Indices: 1962088--1962687 Score: 540
Period size: 167 Copynumber: 3.6 Consensus size: 165
1962078 ATTACAGGGT
* * * *
1962088 TTTCTTCTCCGTAAATTTTTTCGGGAGGATTTCTCTTGGTTTTTTAATTTTTAAAATTCATCAAA
1 TTTCTACTCAGTAAATTTTTTC-GGAGGATTTTTCTTGG-TTTTAAATTTTTAAAATTCATCAAA
* * * *
1962153 TACTATTATTTAATTTATATGAAACTAGTTTTC-AAAATTCATTCATTTTCATGACTTTTTTGAT
64 TATTATTATTTAATTTATATTAAA-TAGTTTTCAAAAATTCATTCATTTTCATGACATTTTTGAA
*
1962217 TTTTTTCGTTAAAATT-TCCTATTTTAAAAATACAAAAC
128 TTTTTTC-TTAAAATTCTCCTATTTCAAAAATACAAAAC
*
1962255 TTTCTACAT-AGTAAATTTTTTCAGAAGGATTTTTCTTGGTTTTAAATTTTTAAAATTCATCAAA
1 TTTCTAC-TCAGTAAATTTTTTC-GGAGGATTTTTCTTGGTTTTAAATTTTTAAAATTCATCAAA
* * * * * *
1962319 TATTATCATTTAATTCATATTAAATTTGTTTACAAAAAGTCATTCATTTTCAT-TCATTTTTGAA
64 TATTATTATTTAATTTATATTAAA-TAGTTTTCAAAAATTCATTCATTTTCATGACATTTTTGAA
* * ** **
1962383 TTTTTTCTTGAAATTCTTCTATTTCAAAAATACGGAGT
128 TTTTTTCTTAAAATTCTCCTATTTCAAAAATACAAAAC
* * * * * *
1962421 TTTTTTCTCTGTAAATTTTTT-AGAGGCATTTTTCTTAGTTTTAAATTTTTAAAATTCTTCAAAT
1 TTTCTACTCAGTAAATTTTTTCGGAGG-ATTTTTCTTGGTTTTAAATTTTTAAAATTCATC-AA-
* * *
1962485 ATTATTATTATTTAATTTATATTAAATAGTTTTCAAAAATCCATTCATGTTCATGA-ATATTTGA
63 A-TATTATTATTTAATTTATATTAAATAGTTTTCAAAAATTCATTCATTTTCATGACATTTTTGA
* * * * * *
1962549 ATTTTTCCTTGAAATT-TCTTTTTTTGAAAAAT-C-AAAT
127 ATTTTTTCTTAAAATTCTC-CTATTTCAAAAATACAAAAC
* * * * * * *
1962586 TTTCTTCTCTGTAAATTTTTT-TGAGAGATTTTTCTCGATTTAAAATTTTT-AAAGTCAT-ATAA
1 TTTCTACTCAGTAAATTTTTTCGGAG-GATTTTTCTTGGTTTTAAATTTTTAAAATTCATCA-AA
* * * * *
1962648 TATTGTCATTAAATTCATATTAAATCAGTTTTAAAAAATT
64 TATTATTATTTAATTTATATTAAAT-AGTTTTCAAAAATT
1962688 TAAATTATTT
Statistics
Matches: 359, Mismatches: 61, Indels: 31
0.80 0.14 0.07
Matches are distributed among these distances:
161 21 0.06
162 14 0.04
163 1 0.00
164 9 0.03
165 83 0.23
166 102 0.28
167 106 0.30
168 23 0.06
ACGTcount: A:0.32, C:0.10, G:0.07, T:0.50
Consensus pattern (165 bp):
TTTCTACTCAGTAAATTTTTTCGGAGGATTTTTCTTGGTTTTAAATTTTTAAAATTCATCAAATA
TTATTATTTAATTTATATTAAATAGTTTTCAAAAATTCATTCATTTTCATGACATTTTTGAATTT
TTTCTTAAAATTCTCCTATTTCAAAAATACAAAAC
Found at i:1962389 original size:166 final size:161
Alignment explanation
Indices: 1962087--1962686 Score: 591
Period size: 166 Copynumber: 3.6 Consensus size: 161
1962077 AATTACAGGG
* * * *
1962087 TTTTCTTCTCCGTAAATTTTTTCGGGAGGATTTCTCTTGGTTTTTTAATTTTTAAAATTCATCAA
1 TTTTCTTCTCTGTAAATTTTTT--AGAGGATTTTTCTTGG-TTTTAAATTTTTAAAATTCATCAA
* * * * * * * *
1962152 ATACTATTATTTAATTTATATGAAACTAGTTTTCAAAATTCATTCATTTTCATGACTTTTTTGAT
63 ATATTATCATTTAATTCATATTAAATTAGTTTTCAAAAATCATTCATTTTCAT-ACATTTTTGAA
*
1962217 TTTTTTCGTTAAAATTTCCTATTTTAAAAATACAAAA
127 TTTTTTC-TTGAAATTTCCTATTTTAAAAATAC-AAA
* * *
1962254 CTTTCTACAT-AGTAAATTTTTTCAGAAGGATTTTTCTTGGTTTTAAATTTTTAAAATTCATCAA
1 TTTTCTTC-TCTGTAAATTTTTT-AG-AGGATTTTTCTTGGTTTTAAATTTTTAAAATTCATCAA
* * *
1962318 ATATTATCATTTAATTCATATTAAATTTGTTTACAAAAAGTCATTCATTTTCATTCATTTTTGAA
63 ATATTATCATTTAATTCATATTAAATTAGTTTTCAAAAA-TCATTCATTTTCATACATTTTTGAA
* * * *
1962383 TTTTTTCTTGAAATTCTTCTATTTCAAAAATACGGAG
127 TTTTTTCTTGAAATT-TCCTATTTTAAAAATAC-AAA
* * *
1962420 TTTTTTTCTCTGTAAATTTTTTAGAGGCATTTTTCTTAGTTTTAAATTTTTAAAATTCTTCAAAT
1 TTTTCTTCTCTGTAAATTTTTTAGAGG-ATTTTTCTTGGTTTTAAATTTTTAAAATTCATC-AA-
* * * *
1962485 ATTATTATTATTTAATTTATATTAAA-TAGTTTTCAAAAATCCATTCATGTTCATGA-ATATTTG
63 A-TATTATCATTTAATTCATATTAAATTAGTTTTCAAAAAT-CATTCATTTTCAT-ACATTTTTG
* * *
1962548 AATTTTTCCTTGAAATTTCTTTTTTTGAAAAAT-CAAA
125 AATTTTTTCTTGAAATTTCCTATTTT-AAAAATACAAA
* * * * *
1962585 TTTTCTTCTCTGTAAATTTTTTTGAGAGATTTTTCTCGATTTAAAATTTTT-AAAGTCAT-ATAA
1 TTTTCTTCTCTGTAAATTTTTTAGAG-GATTTTTCTTGGTTTTAAATTTTTAAAATTCATCA-AA
* * * *
1962648 TATTGTCATTAAATTCATATTAAATCAGTTTTAAAAAAT
64 TATTATCATTTAATTCATATTAAATTAGTTTTCAAAAAT
1962687 TTAAATTATT
Statistics
Matches: 360, Mismatches: 58, Indels: 35
0.79 0.13 0.08
Matches are distributed among these distances:
161 20 0.06
162 14 0.04
163 1 0.00
164 9 0.03
165 85 0.24
166 112 0.31
167 96 0.27
168 23 0.06
ACGTcount: A:0.32, C:0.10, G:0.07, T:0.50
Consensus pattern (161 bp):
TTTTCTTCTCTGTAAATTTTTTAGAGGATTTTTCTTGGTTTTAAATTTTTAAAATTCATCAAATA
TTATCATTTAATTCATATTAAATTAGTTTTCAAAAATCATTCATTTTCATACATTTTTGAATTTT
TTCTTGAAATTTCCTATTTTAAAAATACAAA
Found at i:1964483 original size:18 final size:18
Alignment explanation
Indices: 1964453--1964490 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
1964443 TTTAAAAATA
*
1964453 AATCGAAATAAAATTAAT
1 AATCGAAATAAAATGAAT
1964471 AATC-AAATAAAAATGAAT
1 AATCGAAAT-AAAATGAAT
1964489 AA
1 AA
1964491 ACATTTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.66, C:0.05, G:0.05, T:0.24
Consensus pattern (18 bp):
AATCGAAATAAAATGAAT
Found at i:1968529 original size:13 final size:13
Alignment explanation
Indices: 1968511--1968535 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1968501 ATATTGCTTA
1968511 GTATCGATACATT
1 GTATCGATACATT
1968524 GTATCGATACAT
1 GTATCGATACAT
1968536 GTTCTTTGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:1969087 original size:32 final size:33
Alignment explanation
Indices: 1969046--1969113 Score: 95
Period size: 32 Copynumber: 2.1 Consensus size: 33
1969036 CCTTAACTGT
1969046 TTGTATCGATACA-CACAAG-ATATATCGATACA
1 TTGTATCGATACATC-CAAGAATATATCGATACA
* *
1969078 TTGTATCGATACATCCCAGAATGTATCGATACA
1 TTGTATCGATACATCCAAGAATATATCGATACA
1969111 TTG
1 TTG
1969114 GCTTGTAACG
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
32 16 0.50
33 16 0.50
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (33 bp):
TTGTATCGATACATCCAAGAATATATCGATACA
Found at i:1973969 original size:13 final size:13
Alignment explanation
Indices: 1973951--1973976 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1973941 CAATTTTTTG
1973951 TGTATCGATACAT
1 TGTATCGATACAT
1973964 TGTATCGATACAT
1 TGTATCGATACAT
1973977 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1976374 original size:21 final size:21
Alignment explanation
Indices: 1976350--1976396 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
1976340 TTTGATGCTG
1976350 ATTTTG-A-TGAAAAACGAAGT
1 ATTTTGAAGTGAAAAAC-AAGT
1976370 -TATTTGAAGTGAAAAACAAGT
1 AT-TTTGAAGTGAAAAACAAGT
1976391 ATTTTG
1 ATTTTG
1976397 CAAAAGATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
19 1 0.04
20 4 0.17
21 9 0.39
22 9 0.39
ACGTcount: A:0.43, C:0.04, G:0.19, T:0.34
Consensus pattern (21 bp):
ATTTTGAAGTGAAAAACAAGT
Found at i:1976545 original size:20 final size:20
Alignment explanation
Indices: 1976520--1976597 Score: 84
Period size: 20 Copynumber: 3.6 Consensus size: 20
1976510 ATAATCACCC
*
1976520 TGTATCGATACAAAGAAAAA
1 TGTATCGATACATAGAAAAA
*
1976540 TGTATCGATACATAGAATTTCCAGA
1 TGTATCGATACATAGAA-----AAA
*
1976565 TGTATCGATACATAGAAACA
1 TGTATCGATACATAGAAAAA
1976585 TGTATCGATACAT
1 TGTATCGATACAT
1976598 TTTGGACATT
Statistics
Matches: 50, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
20 31 0.62
25 19 0.38
ACGTcount: A:0.42, C:0.14, G:0.15, T:0.28
Consensus pattern (20 bp):
TGTATCGATACATAGAAAAA
Found at i:1978635 original size:15 final size:15
Alignment explanation
Indices: 1978615--1978645 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1978605 ATTTCCTTTG
*
1978615 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
1978630 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
1978645 G
1 G
1978646 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:1980478 original size:21 final size:21
Alignment explanation
Indices: 1980449--1980493 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
1980439 AAGTTTTCAT
*
1980449 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
1980469 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
1980491 TTT
1 TTT
1980494 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:1982729 original size:13 final size:13
Alignment explanation
Indices: 1982711--1982736 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1982701 CAATTTTTTG
1982711 TGTATCGATACAT
1 TGTATCGATACAT
1982724 TGTATCGATACAT
1 TGTATCGATACAT
1982737 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1985122 original size:20 final size:20
Alignment explanation
Indices: 1985097--1985154 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
1985087 TTTTACCCAG
*
1985097 ATGTATCTATGCATTTTTCA
1 ATGTATCTATACATTTTTCA
* * *
1985117 ATGTATCTATACATGTATGA
1 ATGTATCTATACATTTTTCA
*
1985137 ATGTATCGATACATTTTT
1 ATGTATCTATACATTTTT
1985155 TTCTTTTTAC
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.29, C:0.12, G:0.12, T:0.47
Consensus pattern (20 bp):
ATGTATCTATACATTTTTCA
Found at i:1999113 original size:1 final size:1
Alignment explanation
Indices: 1999107--1999167 Score: 59
Period size: 1 Copynumber: 61.0 Consensus size: 1
1999097 ATAAAACAAG
* * * * * * *
1999107 AAAAAAAATAAAAAAACAAAAAAAAAAACAAAAAACAAAAAAACAAAAACAAACAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1999168 GGGTCTAGAT
Statistics
Matches: 46, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 46 1.00
ACGTcount: A:0.89, C:0.10, G:0.00, T:0.02
Consensus pattern (1 bp):
A
Found at i:1999121 original size:19 final size:18
Alignment explanation
Indices: 1999093--1999167 Score: 80
Period size: 18 Copynumber: 4.0 Consensus size: 18
1999083 CCTTCGTACC
*
1999093 AAATATAAAACAAGAAAAA
1 AAATAAAAAACAA-AAAAA
1999112 AAATAAAAAAACAAAAAAAA
1 AAAT-AAAAAAC-AAAAAAA
*
1999132 AAACAAAAAACAAAAAAA
1 AAATAAAAAACAAAAAAA
*
1999150 CAAA-AACAAACAAAAAAA
1 -AAATAAAAAACAAAAAAA
1999168 GGGTCTAGAT
Statistics
Matches: 50, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
18 20 0.40
19 14 0.28
20 14 0.28
21 2 0.04
ACGTcount: A:0.85, C:0.09, G:0.01, T:0.04
Consensus pattern (18 bp):
AAATAAAAAACAAAAAAA
Found at i:1999124 original size:20 final size:18
Alignment explanation
Indices: 1999099--1999167 Score: 93
Period size: 19 Copynumber: 3.7 Consensus size: 18
1999089 TACCAAATAT
1999099 AAAACAAGAAAAAAAATAAA
1 AAAACAA-AAAAAAAA-AAA
1999119 AAAACAAAAAAAAAAACAA
1 AAAACAAAAAAAAAAA-AA
*
1999138 AAAACAAAAAAACAAAAA
1 AAAACAAAAAAAAAAAAA
*
1999156 CAAACAAAAAAA
1 AAAACAAAAAAA
1999168 GGGTCTAGAT
Statistics
Matches: 46, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
18 14 0.30
19 25 0.54
20 7 0.15
ACGTcount: A:0.87, C:0.10, G:0.01, T:0.01
Consensus pattern (18 bp):
AAAACAAAAAAAAAAAAA
Found at i:2000439 original size:28 final size:28
Alignment explanation
Indices: 2000419--2001041 Score: 583
Period size: 28 Copynumber: 22.0 Consensus size: 28
2000409 AAGCGTACAT
* *
2000419 GTCAATGGCATCCTTTCAAAGCCCACAG
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
2000447 GTCAGTGGCATCCTTTCAAAACCTACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
*
2000475 GTCAGTGGCATCTTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
2000503 GTCAGTAGCACCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
2000531 GTTAGTGGCACCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * *
2000559 GTTAGTAGCATCCTTTGAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
2000587 GTCAGTGACAT-CTCTTCAAAAGACCACAA
1 GTCAGTGGCATCCT-TTC-AAAGCCCACAA
2000616 GTCAGTGGCATCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * * *
2000644 GTTAGTGGCA-CCTTTTCAAACCCCATAG
1 GTCAGTGGCATCC-TTTCAAAGCCCACAA
* * *
2000672 GTTC-GTTGC-GCCTTTTCAAAGCCCATAA
1 G-TCAGTGGCATCC-TTTCAAAGCCCACAA
*
2000700 GTCAGTGGCATCCTTTCAAAGCCTACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
2000728 GTCAATGGCAT-CTCTTCAAAAGACCACAA
1 GTCAGTGGCATCCT-TTC-AAAGCCCACAA
* * ** *
2000757 GTTAGTGGCACCCTTTCAAAGCTTAAAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * * *
2000785 GTCAGTGCCACCCTTTTAAAGCCTACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * *
2000813 GTTAGTGGTATACCCTTTCAAAACCCACATAA
1 GTCAGTGGCAT--CCTTTCAAAGCCCAC--AA
* * * * *
2000845 ATCAGTGGCACCCTTCCAAAGACCATAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
2000873 GTCAATGGCACCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * *
2000901 GTCAGTGGCACCCTTTCAGAGCCCACAT
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * * *
2000929 GTTAGTGGTACCCCTTCACAA-CCCACAA
1 GTCAGTGGCATCCTTTCA-AAGCCCACAA
* *
2000957 GTCAATGGCACCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
*
2000985 GTTAGTGGCATTCCCTTTCAAAGCCCACAA
1 GTCAGTGGCA-T-CCTTTCAAAGCCCACAA
* *
2001015 GTCGGTGGCACCCTTTCAAAGCCCACA
1 GTCAGTGGCATCCTTTCAAAGCCCACA
2001042 CAAAGTCGAT
Statistics
Matches: 489, Mismatches: 87, Indels: 38
0.80 0.14 0.06
Matches are distributed among these distances:
27 10 0.02
28 371 0.76
29 47 0.10
30 52 0.11
32 9 0.02
ACGTcount: A:0.30, C:0.31, G:0.16, T:0.23
Consensus pattern (28 bp):
GTCAGTGGCATCCTTTCAAAGCCCACAA
Found at i:2000693 original size:113 final size:111
Alignment explanation
Indices: 2000424--2001041 Score: 515
Period size: 113 Copynumber: 5.5 Consensus size: 111
2000414 TACATGTCAA
* * * * * * * * *
2000424 TGGCATCCTTTCAAAGCCCACAGGTCAGTGGCATCCTTTCAAAACCTACAAGTCAGTGGCATCTT
1 TGGCACCCTTTCAAACCCCACAAGTTAGTAGCAGCCTTTCAAAGCCCACAAGTCAGTGGCATCTC
* *
2000489 TTCAAAGCCCACAAGTCAGTAGCACCCTTTCAAAGCCCACAAGTTAG
66 TTCAAAG-CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTTAG
* * * *
2000536 TGGCACCCTTTCAAAGCCCACAAGTTAGTAGCATCCTTTGAAAGCCCACAAGTCAGTGACATCTC
1 TGGCACCCTTTCAAACCCCACAAGTTAGTAGCAGCCTTTCAAAGCCCACAAGTCAGTGGCATCTC
2000601 TTCAAAAGACCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTTAG
66 TTC-AAAG-CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTTAG
* * * * * *
2000649 TGGCACCTTTTCAAACCCCATAGGTTCGTTGC-GCCTTTTCAAAGCCCATAAGTCAGTGGCATC-
1 TGGCACCCTTTCAAACCCCACAAGTTAGTAGCAGCC-TTTCAAAGCCCACAAGTCAGTGGCATCT
* *
2000712 CTTTCAAAGCCTACAAGTCAATGGCAT-CTCTTCAAAAGACCACAAGTTAG
65 C-TTCAAAGCC-ACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTTAG
* ** * * * * * * *
2000762 TGGCACCCTTTCAAAGCTTAAAAGTCAGT-GCCACCCTTTTAAAGCCTACAAGTTAGTGGTATAC
1 TGGCACCCTTTCAAACCCCACAAGTTAGTAG-CAGCCTTTCAAAGCCCACAAGTCAGTGGCAT-C
* * * * * * * * *
2000826 CCTTTCAAAACCCACATAAATCAGTGGCACCCTTCCAAAGACCATAAGTCAA
64 TC-TTC-AAAGCCAC--AAGTCAGTGGCATCCTTTCAAAGCCCACAAGTTAG
* * * * * * * * * *
2000878 TGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAGAGCCCACATGTTAGTGGTACCCC
1 TGGCACCCTTTCAAACCCCACAAGTTAGTAGCAGCCTTTCAAAGCCCACAAGTCAGTGGCATCTC
* * *
2000943 TTCACAACCCACAAGTCAATGGCACCCTTTCAAAGCCCACAAGTTAG
66 TTCA-AAGCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTTAG
* ** * *
2000990 TGGCATTCCCTTTCAAAGCCCACAAGTCGGTGGCACCCTTTCAAAGCCCACA
1 TGGCA--CCCTTTCAAACCCCACAAGTTAGTAGCAGCCTTTCAAAGCCCACA
2001042 CAAAGTCGAT
Statistics
Matches: 425, Mismatches: 63, Indels: 34
0.81 0.12 0.07
Matches are distributed among these distances:
111 4 0.01
112 117 0.28
113 153 0.36
114 56 0.13
115 10 0.02
116 70 0.16
117 13 0.03
118 2 0.00
ACGTcount: A:0.30, C:0.31, G:0.16, T:0.23
Consensus pattern (111 bp):
TGGCACCCTTTCAAACCCCACAAGTTAGTAGCAGCCTTTCAAAGCCCACAAGTCAGTGGCATCTC
TTCAAAGCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTTAG
Found at i:2002074 original size:20 final size:20
Alignment explanation
Indices: 2002049--2002125 Score: 93
Period size: 20 Copynumber: 3.9 Consensus size: 20
2002039 TTTTACCTAG
2002049 ATGTATCGATACATTCTTCA
1 ATGTATCGATACATTCTTCA
* * * *
2002069 ATGTATCAATACAAGT-ATGA
1 ATGTATCGATAC-ATTCTTCA
2002089 ATGTATCGATACATTCTTCA
1 ATGTATCGATACATTCTTCA
*
2002109 ATGTATTGATACATTCT
1 ATGTATCGATACATTCT
2002126 GTCTTTTTAC
Statistics
Matches: 46, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
19 2 0.04
20 42 0.91
21 2 0.04
ACGTcount: A:0.34, C:0.16, G:0.12, T:0.39
Consensus pattern (20 bp):
ATGTATCGATACATTCTTCA
Found at i:2004251 original size:20 final size:19
Alignment explanation
Indices: 2004196--2004251 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 19
2004186 AAAACCCTTA
*
2004196 AAAGTATCGATACATAATTC
1 AAAGTATCGATACAT-GTTC
2004216 AAAGTATCGATACATGTTGC
1 AAAGTATCGATACATGTT-C
*
2004236 AATGTATCGATACATG
1 AAAGTATCGATACATG
2004252 AAAAAGATGT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 2 0.06
20 31 0.94
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.30
Consensus pattern (19 bp):
AAAGTATCGATACATGTTC
Found at i:2004327 original size:19 final size:18
Alignment explanation
Indices: 2004303--2004365 Score: 73
Period size: 19 Copynumber: 3.7 Consensus size: 18
2004293 TAGCCAAACT
2004303 TGTATCGATACACAAAATA
1 TGTATCGATACACAAAA-A
2004322 TGTATCGAT--AC---AA
1 TGTATCGATACACAAAAA
2004335 TGTATCGATACACAAAAA
1 TGTATCGATACACAAAAA
2004353 TTGTATCGATACA
1 -TGTATCGATACA
2004366 TTGGCTTGTA
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 10 0.26
14 1 0.03
15 2 0.05
17 2 0.05
18 2 0.05
19 21 0.55
ACGTcount: A:0.43, C:0.16, G:0.13, T:0.29
Consensus pattern (18 bp):
TGTATCGATACACAAAAA
Found at i:2004339 original size:13 final size:13
Alignment explanation
Indices: 2004321--2004346 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2004311 TACACAAAAT
2004321 ATGTATCGATACA
1 ATGTATCGATACA
2004334 ATGTATCGATACA
1 ATGTATCGATACA
2004347 CAAAAATTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2004344 original size:32 final size:32
Alignment explanation
Indices: 2004303--2004365 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
2004293 TAGCCAAACT
2004303 TGTATCGATACAC-AAAATATGTATCGATACAA
1 TGTATCGATACACAAAAAT-TGTATCGATACAA
2004335 TGTATCGATACACAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAATTGTATCGATACA
2004366 TTGGCTTGTA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
32 25 0.83
33 5 0.17
ACGTcount: A:0.43, C:0.16, G:0.13, T:0.29
Consensus pattern (32 bp):
TGTATCGATACACAAAAATTGTATCGATACAA
Found at i:2006597 original size:21 final size:21
Alignment explanation
Indices: 2006564--2006613 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
2006554 TTGCAAGTTG
*
2006564 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
2006586 AAATAATG-AGTTAGCTAAGAA
1 AAATAAAGAAGTTAGCTAAG-A
2006607 AAATAAA
1 AAATAAA
2006614 AATTTGCATA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 16 0.67
22 7 0.29
ACGTcount: A:0.56, C:0.04, G:0.18, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:2008431 original size:15 final size:15
Alignment explanation
Indices: 2008411--2008441 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
2008401 TAAAAATATC
*
2008411 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
2008426 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
2008441 C
1 C
2008442 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:2013041 original size:20 final size:19
Alignment explanation
Indices: 2012986--2013041 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 19
2012976 AAAACCCTTA
*
2012986 AAAGTATCGATACATAATTC
1 AAAGTATCGATACAT-GTTC
2013006 AAAGTATCGATACATGTTGC
1 AAAGTATCGATACATGTT-C
*
2013026 AATGTATCGATACATG
1 AAAGTATCGATACATG
2013042 AAAAAGATGT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 2 0.06
20 31 0.94
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.30
Consensus pattern (19 bp):
AAAGTATCGATACATGTTC
Found at i:2013135 original size:20 final size:20
Alignment explanation
Indices: 2013092--2013143 Score: 79
Period size: 19 Copynumber: 2.6 Consensus size: 20
2013082 GTAGCCAAAC
*
2013092 TTGTATCGATACACAAAATA
1 TTGTATCGATACACAAAAAA
*
2013112 -TGTATCAATACACAAAAAA
1 TTGTATCGATACACAAAAAA
2013131 TTGTATCGATACA
1 TTGTATCGATACA
2013144 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 17 0.61
20 11 0.39
ACGTcount: A:0.46, C:0.15, G:0.10, T:0.29
Consensus pattern (20 bp):
TTGTATCGATACACAAAAAA
Found at i:2016116 original size:27 final size:27
Alignment explanation
Indices: 2016077--2016197 Score: 89
Period size: 27 Copynumber: 4.2 Consensus size: 27
2016067 GCACCTTTTT
* *
2016077 CCTTTTAAATCCATAATTCCATGGCAC
1 CCTTTTAAATCCACAACTCCATGGCAC
* *
2016104 CCTTTTAAGTCCACAACTCCATGGCGC
1 CCTTTTAAATCCACAACTCCATGGCAC
* *
2016131 CTTTTTCTTTTTAAAGCCCACAACTCCGTGGCAC
1 C-----C-TTTTAAA-TCCACAACTCCATGGCAC
* * *
2016165 CCTTTCAAATCCATAACTCCGTGGCAC
1 CCTTTTAAATCCACAACTCCATGGCAC
*
2016192 CTTTTT
1 CCTTTT
2016198 CTTTTCAAAG
Statistics
Matches: 74, Mismatches: 13, Indels: 14
0.73 0.13 0.14
Matches are distributed among these distances:
27 44 0.59
28 6 0.08
29 1 0.01
32 1 0.01
33 6 0.08
34 16 0.22
ACGTcount: A:0.23, C:0.33, G:0.11, T:0.33
Consensus pattern (27 bp):
CCTTTTAAATCCACAACTCCATGGCAC
Found at i:2016239 original size:25 final size:26
Alignment explanation
Indices: 2016210--2016281 Score: 69
Period size: 26 Copynumber: 2.8 Consensus size: 26
2016200 TTTCAAAGCC
2016210 CATAACT-TCATGGCA-CCTTTTAAGA
1 CATAACTCT-ATGGCATCCTTTTAAGA
* *
2016235 CATAACTCTGTGGCATCCTTTTAAGTC
1 CATAACTCTATGGCATCCTTTTAAG-A
* *
2016262 CACAACTCTGTGGCA-CCTTT
1 CATAACTCTATGGCATCCTTT
2016282 CTCTTTTCAA
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
25 12 0.29
26 15 0.37
27 14 0.34
ACGTcount: A:0.25, C:0.28, G:0.14, T:0.33
Consensus pattern (26 bp):
CATAACTCTATGGCATCCTTTTAAGA
Found at i:2016269 original size:86 final size:86
Alignment explanation
Indices: 2016152--2016316 Score: 240
Period size: 86 Copynumber: 1.9 Consensus size: 86
2016142 TAAAGCCCAC
* * *
2016152 AACTCCGTGGCACCCTTTCAAATCCATAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCATAACT
1 AACTCCGTGGCACCCTTTCAAATCCACAACTCCGTGGCACCTTTCTCTTTTCAAAGCCCACAACT
*
2016217 TCATGGCACCTTTTAAGACAT
66 CCATGGCACCTTTTAAGACAT
* * * * *
2016238 AACTCTGTGGCATCCTTTTAAGTCCACAACTCTGTGGCACCTTTCTCTTTTCAAAGCCCACAACT
1 AACTCCGTGGCACCCTTTCAAATCCACAACTCCGTGGCACCTTTCTCTTTTCAAAGCCCACAACT
*
2016303 CCGTGGCACCTTTT
66 CCATGGCACCTTTT
2016317 TCTTTTCAAA
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
86 69 1.00
ACGTcount: A:0.23, C:0.32, G:0.13, T:0.32
Consensus pattern (86 bp):
AACTCCGTGGCACCCTTTCAAATCCACAACTCCGTGGCACCTTTCTCTTTTCAAAGCCCACAACT
CCATGGCACCTTTTAAGACAT
Found at i:2016280 original size:26 final size:25
Alignment explanation
Indices: 2016220--2016281 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 25
2016210 CATAACTTCA
*
2016220 TGGCACCTTTTAAGACATAACTCTG
1 TGGCACCTTTTAAGACACAACTCTG
*
2016245 TGGCATCCTTTTAAGTCCACAACTCTG
1 TGGCA-CCTTTTAAG-ACACAACTCTG
2016272 TGGCACCTTT
1 TGGCACCTTT
2016282 CTCTTTTCAA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
25 5 0.15
26 14 0.42
27 14 0.42
ACGTcount: A:0.23, C:0.27, G:0.16, T:0.34
Consensus pattern (25 bp):
TGGCACCTTTTAAGACACAACTCTG
Found at i:2016339 original size:33 final size:34
Alignment explanation
Indices: 2016114--2016350 Score: 171
Period size: 34 Copynumber: 7.7 Consensus size: 34
2016104 CCTTTTAAGT
* * *
2016114 CCACAACTCCATGGCGCCTTTTTCTTTTTAAAGC
1 CCACAACTCCGTGGCACCTTTTTCTTTTCAAAGC
*
2016148 CCACAACTCCGTGGCACC-----C-TTTCAAA-T
1 CCACAACTCCGTGGCACCTTTTTCTTTTCAAAGC
*
2016175 CCATAACTCCGTGGCACCTTTTTCTTTTCAAAGC
1 CCACAACTCCGTGGCACCTTTTTCTTTTCAAAGC
* * *
2016209 CCATAACTTCATGGCA-C-----CTTTT--AAG-
1 CCACAACTCCGTGGCACCTTTTTCTTTTCAAAGC
* * * * *
2016234 ACATAACTCTGTGGCA--T---CCTTTT--AAGT
1 CCACAACTCCGTGGCACCTTTTTCTTTTCAAAGC
* *
2016261 CCACAACTCTGTGGCACCTTTCTCTTTTCAAAGC
1 CCACAACTCCGTGGCACCTTTTTCTTTTCAAAGC
2016295 CCACAACTCCGTGGCACCTTTTTCTTTTCAAAGC
1 CCACAACTCCGTGGCACCTTTTTCTTTTCAAAGC
2016329 CCACAA-TCCGTGGCACCTTTTT
1 CCACAACTCCGTGGCACCTTTTT
2016351 AAGTCCACAA
Statistics
Matches: 168, Mismatches: 18, Indels: 35
0.76 0.08 0.16
Matches are distributed among these distances:
25 12 0.07
26 11 0.07
27 31 0.18
28 11 0.07
29 2 0.01
32 6 0.04
33 24 0.14
34 71 0.42
ACGTcount: A:0.22, C:0.33, G:0.12, T:0.32
Consensus pattern (34 bp):
CCACAACTCCGTGGCACCTTTTTCTTTTCAAAGC
Found at i:2016349 original size:61 final size:59
Alignment explanation
Indices: 2016066--2016388 Score: 241
Period size: 61 Copynumber: 5.4 Consensus size: 59
2016056 ATAACTCTGG
* * * * *
2016066 GGCACCTTTTTCCTTTTAAA-TCCATAATTCCATGGCACCCTTTTAAGTCCACAACTCCAT
1 GGCACCTTTTT-CTTTTAAAGCCCACAACTCCGTGGCA-CCTTTTAAGTCCACAACTCCGT
* * * *
2016126 GGCGCCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACCCTTTCAAATCCATAACTCCGT
1 GGCACCTTTTTC-TTTTAAAGCCCACAACTCCGTGGCA-CCTTTTAAGTCCACAACTCCGT
* * * * * *
2016187 GGCACCTTTTTCTTTTCAAAGCCCATAACTTCATGGCACCTTTTAAG-ACATAACTCTGT
1 GGCACCTTTTTCTTTT-AAAGCCCACAACTCCGTGGCACCTTTTAAGTCCACAACTCCGT
* * * *
2016246 GGCA-----TCCTTTT-AAGTCCACAACTCTGTGGCACCTTTCTCTTTTCAAAGCCCACAACTCC
1 GGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCA-----C-CTTTT--AAGTCCACAACTCC
2016305 GT
58 GT
* *
2016307 GGCACCTTTTTCTTTTCAAAGCCCACAA-TCCGTGGCACCTTTTTAAGTCCACAACGCTGT
1 GGCACCTTTTTCTTTT-AAAGCCCACAACTCCGTGGCACC-TTTTAAGTCCACAACTCCGT
* *
2016367 GGCACCTTTTCCTTGTAAAGCC
1 GGCACCTTTTTCTTTTAAAGCC
2016389 TACACAAATC
Statistics
Matches: 209, Mismatches: 34, Indels: 41
0.74 0.12 0.14
Matches are distributed among these distances:
52 15 0.07
54 6 0.03
57 1 0.00
58 5 0.02
59 21 0.10
60 58 0.28
61 75 0.36
62 5 0.02
66 6 0.03
67 8 0.04
68 9 0.04
ACGTcount: A:0.23, C:0.32, G:0.13, T:0.33
Consensus pattern (59 bp):
GGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCACCTTTTAAGTCCACAACTCCGT
Found at i:2016449 original size:32 final size:32
Alignment explanation
Indices: 2016382--2016598 Score: 172
Period size: 32 Copynumber: 6.8 Consensus size: 32
2016372 CTTTTCCTTG
* * * * *
2016382 TAAAGCCTACACAAATCAGTGGTAACC-CATC
1 TAAAGCCCACACAAGTCGGTGGCAACCTCTTC
* *
2016413 TTAAAGCCTACACAAGTCGGTGGCAACCTCTTT
1 -TAAAGCCCACACAAGTCGGTGGCAACCTCTTC
* * *
2016446 TAAAGCTCATACAAGTCAGTGGCAACCTCTTC
1 TAAAGCCCACACAAGTCGGTGGCAACCTCTTC
* ** * *
2016478 TAAAGCCCATACAAGTTAGTGGGAA-CTTTTC
1 TAAAGCCCACACAAGTCGGTGGCAACCTCTTC
* * * *
2016509 TTAATGACCACACAAGTTGGTAGCAACCCATCTTC
1 -TAAAGCCCACACAAGTCGGTGGCAA-CC-TCTTC
*
2016544 TAAAGCCCACACAAATCGGTGGCAACC-CTCTC
1 TAAAGCCCACACAAGTCGGTGGCAACCTCT-TC
*
2016576 T-AAGCCCACACAAGTAGGTGGCA
1 TAAAGCCCACACAAGTCGGTGGCA
2016599 TCTTTTTTTA
Statistics
Matches: 151, Mismatches: 28, Indels: 13
0.79 0.15 0.07
Matches are distributed among these distances:
31 27 0.18
32 95 0.63
33 4 0.03
34 21 0.14
35 4 0.03
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (32 bp):
TAAAGCCCACACAAGTCGGTGGCAACCTCTTC
Found at i:2016499 original size:96 final size:97
Alignment explanation
Indices: 2016384--2016590 Score: 215
Period size: 96 Copynumber: 2.1 Consensus size: 97
2016374 TTTCCTTGTA
* * * * * *
2016384 AAGCCTACACAAATCAGTGGTAACCCATCTTAAAG-CCTACACAAGTCGGTGGCAA-CC-TCTTT
1 AAGCCCACACAAGTTAGTGGGAACCCATCTTAAAGACC-ACACAAGTCGGTAGCAACCCATCTTC
* * *
2016446 TAAAGCTCATACAAGTCAGTGGCAA-CCTCTTCT
65 TAAAGCCCACACAAATCAGTGGCAACCCTC-TCT
* *** * *
2016479 AAAGCCCATACAAGTTAGTGGGAACTTTTCTTAATGACCACACAAGTTGGTAGCAACCCATCTTC
1 -AAGCCCACACAAGTTAGTGGGAACCCATCTTAAAGACCACACAAGTCGGTAGCAACCCATCTTC
*
2016544 TAAAGCCCACACAAATCGGTGGCAACCCTCTCT
65 TAAAGCCCACACAAATCAGTGGCAACCCTCTCT
2016577 AAGCCCACACAAGT
1 AAGCCCACACAAGT
2016591 AGGTGGCATC
Statistics
Matches: 90, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
96 41 0.46
97 17 0.19
98 28 0.31
99 4 0.04
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.23
Consensus pattern (97 bp):
AAGCCCACACAAGTTAGTGGGAACCCATCTTAAAGACCACACAAGTCGGTAGCAACCCATCTTCT
AAAGCCCACACAAATCAGTGGCAACCCTCTCT
Found at i:2016668 original size:52 final size:52
Alignment explanation
Indices: 2016606--2017026 Score: 352
Period size: 52 Copynumber: 8.1 Consensus size: 52
2016596 GCATCTTTTT
* * * *
2016606 TTAAGTCCAATGTCGTTGGCCTTGAATCAGGACATTGGCACCTTTTTCTTTC
1 TTAAGTCCAATATCGCTAGCCTTGAATCAGCACATTGGCACCTTTTTCTTTC
* * * * * * * * *
2016658 TTAAGTCCAATGTCGTTGGCATTAAATCAACATATTGGCACTTTTTTC-ATC
1 TTAAGTCCAATATCGCTAGCCTTGAATCAGCACATTGGCACCTTTTTCTTTC
* * * *
2016709 TTTAAGCCCAATATCGCTAGCCTTGAATTAGCAAATTGGCACATTTTTCTTTC
1 -TTAAGTCCAATATCGCTAGCCTTGAATCAGCACATTGGCACCTTTTTCTTTC
* * * * * *
2016762 TTAAGTCCAATATCGCTGGCCTTAAATCAAC-CTATTAGCACCTTTGTC-ATC
1 TTAAGTCCAATATCGCTAGCCTTGAATCAGCAC-ATTGGCACCTTTTTCTTTC
* * * * *
2016813 TTTAAGCCCAATACCGCTAGCTTTGAATTAGCACATTAGCACCTTTTTCTTTC
1 -TTAAGTCCAATATCGCTAGCCTTGAATCAGCACATTGGCACCTTTTTCTTTC
* * *
2016866 TTAAGTCCAATATCAC-AGCCTTGAATCAGCATATTGGCACATTTTTCTTTC
1 TTAAGTCCAATATCGCTAGCCTTGAATCAGCACATTGGCACCTTTTTCTTTC
* * * * * *
2016917 TTAAGTCCAATCTTGCTAGCCTTGAATCAGCATATTAGCGCCTTTGTT-ATT-
1 TTAAGTCCAATATCGCTAGCCTTGAATCAGCACATTGGCACCTTT-TTCTTTC
* * * * * *
2016968 TTAAGTCTAATTTTGCT-GACCTTGAATTAGTACATTGGCACCTTTTTCATTC
1 TTAAGTCCAATATCGCTAG-CCTTGAATCAGCACATTGGCACCTTTTTCTTTC
*
2017020 TTCAGTC
1 TTAAGTC
2017027 TATATCTTTC
Statistics
Matches: 298, Mismatches: 60, Indels: 22
0.78 0.16 0.06
Matches are distributed among these distances:
50 3 0.01
51 86 0.29
52 202 0.68
53 7 0.02
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (52 bp):
TTAAGTCCAATATCGCTAGCCTTGAATCAGCACATTGGCACCTTTTTCTTTC
Found at i:2016787 original size:104 final size:104
Alignment explanation
Indices: 2016605--2016948 Score: 413
Period size: 104 Copynumber: 3.3 Consensus size: 104
2016595 GGCATCTTTT
* * * * * *
2016605 TTTAAGTCCAATGTCGTTGGCCTTGAATCAGGACATTGGCACCTTTTTCTTTCTTAAGTCCAATG
1 TTTAAGCCCAATATCGCTAGCCTTGAATCAGCACATTGGCACCTTTTTCTTTCTTAAGTCCAATA
* * *
2016670 TCGTTGGCATTAAATCAACATATTGGCACTTTTTTCATC
66 TCGCTGGCCTTAAATCAACATATTGGCACATTTTTCATC
* * *
2016709 TTTAAGCCCAATATCGCTAGCCTTGAATTAGCAAATTGGCACATTTTTCTTTCTTAAGTCCAATA
1 TTTAAGCCCAATATCGCTAGCCTTGAATCAGCACATTGGCACCTTTTTCTTTCTTAAGTCCAATA
* * * *
2016774 TCGCTGGCCTTAAATCAACCTATTAGCACCTTTGTCATC
66 TCGCTGGCCTTAAATCAACATATTGGCACATTTTTCATC
* * * *
2016813 TTTAAGCCCAATACCGCTAGCTTTGAATTAGCACATTAGCACCTTTTTCTTTCTTAAGTCCAATA
1 TTTAAGCCCAATATCGCTAGCCTTGAATCAGCACATTGGCACCTTTTTCTTTCTTAAGTCCAATA
* * * * *
2016878 TCAC-AGCCTTGAATCAGCATATTGGCACATTTTTC-TT
66 TCGCTGGCCTTAAATCAACATATTGGCACATTTTTCATC
* * *
2016915 TCTTAAGTCCAATCTTGCTAGCCTTGAATCAGCA
1 T-TTAAGCCCAATATCGCTAGCCTTGAATCAGCA
2016949 TATTAGCGCC
Statistics
Matches: 204, Mismatches: 35, Indels: 3
0.84 0.14 0.01
Matches are distributed among these distances:
102 2 0.01
103 50 0.25
104 152 0.75
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.37
Consensus pattern (104 bp):
TTTAAGCCCAATATCGCTAGCCTTGAATCAGCACATTGGCACCTTTTTCTTTCTTAAGTCCAATA
TCGCTGGCCTTAAATCAACATATTGGCACATTTTTCATC
Found at i:2016945 original size:155 final size:155
Alignment explanation
Indices: 2016695--2017026 Score: 409
Period size: 155 Copynumber: 2.1 Consensus size: 155
2016685 CAACATATTG
* * * *
2016695 GCACTTTTTTCA-TCTTTAAGCCCAATATCGCTAGCCTTGAATTAGCAAATTGGCACATTTTTCT
1 GCACCTTTTTCATTC-TTAAGTCCAATATCACTAGCCTTGAATCAGCAAATTGGCACATTTTTCT
* *
2016759 TTCTTAAGTCCAATATCGCTGGCCTTAAATCAACCTATTAGCACCTTTGTCATCTTTAAGCCCAA
65 TTCTTAAGTCCAATATCGCTAGCCTTAAATCAACATATTAGCACCTTTGTCAT-TTTAAGCCCAA
*
2016824 TACCGCT-AGCTTTGAATTAGCACATTA
129 TACCGCTGA-CCTTGAATTAGCACATTA
* *
2016851 GCACCTTTTTCTTTCTTAAGTCCAATATCAC-AGCCTTGAATCAGCATATTGGCACATTTTTCTT
1 GCACCTTTTTCATTCTTAAGTCCAATATCACTAGCCTTGAATCAGCAAATTGGCACATTTTTCTT
* * * * * * * * *
2016915 TCTTAAGTCCAATCTTGCTAGCCTTGAATCAGCATATTAGCGCCTTTGTTATTTTAAGTCTAATT
66 TCTTAAGTCCAATATCGCTAGCCTTAAATCAACATATTAGCACCTTTGTCATTTTAAGCCCAATA
** * *
2016980 TTGCTGACCTTGAATTAGTACATTG
131 CCGCTGACCTTGAATTAGCACATTA
*
2017005 GCACCTTTTTCATTCTTCAGTC
1 GCACCTTTTTCATTCTTAAGTC
2017027 TATATCTTTC
Statistics
Matches: 150, Mismatches: 24, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
154 48 0.32
155 76 0.51
156 24 0.16
157 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.13, T:0.39
Consensus pattern (155 bp):
GCACCTTTTTCATTCTTAAGTCCAATATCACTAGCCTTGAATCAGCAAATTGGCACATTTTTCTT
TCTTAAGTCCAATATCGCTAGCCTTAAATCAACATATTAGCACCTTTGTCATTTTAAGCCCAATA
CCGCTGACCTTGAATTAGCACATTA
Found at i:2017271 original size:32 final size:32
Alignment explanation
Indices: 2017235--2017397 Score: 106
Period size: 32 Copynumber: 5.2 Consensus size: 32
2017225 TTCTGAATTG
*
2017235 GTCAAAATTCAATCTTGTCTCATTTTGAACAA
1 GTCAAAATTCAATCTTGTCTCTTTTTGAACAA
* * *
2017267 GTCAAAAGTTGAACCTAT-T-TCTTTTTGAATAA
1 GTCAAAA-TTCAATCT-TGTCTCTTTTTGAACAA
* * * *
2017299 GTGAAAATTC-ATAATTATCTCTTTTTAAACAA
1 GTCAAAATTCAAT-CTTGTCTCTTTTTGAACAA
* * **
2017331 GTCAAAATTCAAACTTGTATCTTTTT-AGTAA
1 GTCAAAATTCAATCTTGTCTCTTTTTGAACAA
* * * *
2017362 GTCAAAAGTCAAACTT-T-T-TTTCTAAACAA
1 GTCAAAATTCAATCTTGTCTCTTTTTGAACAA
2017391 GTCAAAA
1 GTCAAAA
2017398 GTCGACATGT
Statistics
Matches: 103, Mismatches: 21, Indels: 17
0.73 0.15 0.12
Matches are distributed among these distances:
28 4 0.04
29 11 0.11
30 3 0.03
31 22 0.21
32 54 0.52
33 8 0.08
34 1 0.01
ACGTcount: A:0.38, C:0.15, G:0.09, T:0.38
Consensus pattern (32 bp):
GTCAAAATTCAATCTTGTCTCTTTTTGAACAA
Found at i:2017272 original size:64 final size:64
Alignment explanation
Indices: 2017069--2017397 Score: 271
Period size: 64 Copynumber: 5.2 Consensus size: 64
2017059 TGTATCCTTC
* * * * * *
2017069 TGAACAAGTCAAAACTTGAACTTGTGTCCTTCTAAATAGGTCAAAAGTCAAACTTATCTCTTTT
1 TGAACAAGTCAAAATTTGAACCTATGTTCTTCTGAATAAGTCAAAAGTCAAACTTATCTCTTTT
* * * * * *
2017133 TGAAAAAGTTAAAATTT-AGACCTATGTTCTTC-GAATAACTCAAAAGTCAAACATGTCTCTTTC
1 TGAACAAGTCAAAATTTGA-ACCTATGTTCTTCTGAATAAGTCAAAAGTCAAACTTATCTCTTTT
* * ** * * * *
2017196 TAAATAAGTCAAAATTTGAACCTATGTTCTTCTGAATTGGTCAAAATTCAATCTTGTCTCATTT
1 TGAACAAGTCAAAATTTGAACCTATGTTCTTCTGAATAAGTCAAAAGTCAAACTTATCTCTTTT
* * * *
2017260 TGAACAAGTCAAAAGTTGAACCTAT-TTCTTTTTGAATAAGTGAAAATTCATAA-TTATCTCTTT
1 TGAACAAGTCAAAATTTGAACCTATGTTC-TTCTGAATAAGTCAAAAGTCA-AACTTATCTCTTT
2017323 T
64 T
* * * * * * *
2017324 TAAACAAGTCAAAA-TTCAAACT-TGTATCTTTTTAGTAAGTCAAAAGTCAAACTT-T-T-TTTC
1 TGAACAAGTCAAAATTTGAACCTATGT-TCTTCTGAATAAGTCAAAAGTCAAACTTATCTCTTTT
*
2017384 TAAACAAGTCAAAA
1 TGAACAAGTCAAAA
2017398 GTCGACATGT
Statistics
Matches: 216, Mismatches: 41, Indels: 20
0.78 0.15 0.07
Matches are distributed among these distances:
60 17 0.08
61 1 0.00
62 4 0.02
63 82 0.38
64 111 0.51
65 1 0.00
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.36
Consensus pattern (64 bp):
TGAACAAGTCAAAATTTGAACCTATGTTCTTCTGAATAAGTCAAAAGTCAAACTTATCTCTTTT
Found at i:2018911 original size:20 final size:19
Alignment explanation
Indices: 2018886--2018923 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
2018876 ATTTCAACGA
2018886 TTTGTATAGATACATATTTT
1 TTTGTATAGATACA-ATTTT
*
2018906 TTTGTATCGATACAATTT
1 TTTGTATAGATACAATTT
2018924 AAGCTACTGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.29, C:0.08, G:0.11, T:0.53
Consensus pattern (19 bp):
TTTGTATAGATACAATTTT
Found at i:2018980 original size:13 final size:13
Alignment explanation
Indices: 2018962--2018986 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2018952 ATCACTTAAA
2018962 TGTATCGATACAT
1 TGTATCGATACAT
2018975 TGTATCGATACA
1 TGTATCGATACA
2018987 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2019124 original size:52 final size:52
Alignment explanation
Indices: 2018975--2019125 Score: 214
Period size: 52 Copynumber: 2.9 Consensus size: 52
2018965 ATCGATACAT
** * * *
2018975 TGTATCGATACACTGA-TCTTTGTATCGATACATGTAGGGAAATTTGCCCAGA
1 TGTATCGATACACT-ATTCAATGTATCGATACATGCAGGCAAATTTTCCCAGA
* **
2019027 TGTATCGATACATTATAAAATGTATCGATACATGCAGGCAAATTTTCCCAGA
1 TGTATCGATACACTATTCAATGTATCGATACATGCAGGCAAATTTTCCCAGA
2019079 TGTATCGATACACTATTCAATGTATCGATACATGCAGGCAAATTTTC
1 TGTATCGATACACTATTCAATGTATCGATACATGCAGGCAAATTTTC
2019126 TTATTTTGAG
Statistics
Matches: 87, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
51 1 0.01
52 86 0.99
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Consensus pattern (52 bp):
TGTATCGATACACTATTCAATGTATCGATACATGCAGGCAAATTTTCCCAGA
Found at i:2027036 original size:31 final size:31
Alignment explanation
Indices: 2026998--2027325 Score: 197
Period size: 31 Copynumber: 10.7 Consensus size: 31
2026988 ATACCTTTTT
*
2026998 AAAGTCCACGACTTAGTGGCAATCTCTTCTC
1 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
*
2027029 AAAGTCCACGACTCAGTGGC-AT-TTTGTCTC
1 AAAGTCCACGACTCAGTGGCAATCTCT-TCTC
* *
2027059 AAAGTCCACGACTTAGTGGC-ATCCTTTTCTTC
1 AAAGTCCACGACTCAGTGGCAAT-CTCTTC-TC
* * * * * * *
2027091 GAAGCCCACGAATCAGTGGCATTTTGTCCT-
1 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
* * * *
2027121 AAAATCCACGACTCCGTGGCACCTTTTCTTCTC
1 AAAGTCCACGACTCAGTGGCA--ATCTCTTCTC
* * * * * * *
2027154 AAAGCCCGCGACTCAATGGCATTTTGTCCT-
1 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
* * * *
2027184 AAAGTCCACAATTCAGTGGC-ATCTCCTCCTT
1 AAAGTCCACGACTCAGTGGCAATCT-CTTCTC
* *
2027215 AAAGTCCACGACTCAATGGCAATCTCTTTTC
1 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
* * * * * *
2027246 AAAGCCCACGACTCAGTGGCATTTTGTCCTA
1 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
* * *
2027277 AAAGTCCACAATTCAGTGGC-ATCCCTT-T-
1 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
*
2027305 TAAGTCCACGACTCAGTGGCA
1 AAAGTCCACGACTCAGTGGCA
2027326 TCAAAGTCCA
Statistics
Matches: 227, Mismatches: 58, Indels: 26
0.73 0.19 0.08
Matches are distributed among these distances:
28 17 0.07
29 5 0.02
30 64 0.28
31 89 0.39
32 35 0.15
33 17 0.07
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (31 bp):
AAAGTCCACGACTCAGTGGCAATCTCTTCTC
Found at i:2027117 original size:62 final size:62
Alignment explanation
Indices: 2026997--2027206 Score: 250
Period size: 62 Copynumber: 3.4 Consensus size: 62
2026987 AATACCTTTT
* *
2026997 TAAAGTCCACGACTTAGTGGCAAT-CTCTTC-TCAAAGTCCACGACTCAGTGGCATTTTGT-C
1 TAAAGTCCACGACTTAGTGGC-ATCCTTTTCTTCAAAGCCCACGACTCAGTGGCATTTTGTCC
* *
2027057 TCAAAGTCCACGACTTAGTGGCATCCTTTTCTTCGAAGCCCACGAATCAGTGGCATTTTGTCC
1 T-AAAGTCCACGACTTAGTGGCATCCTTTTCTTCAAAGCCCACGACTCAGTGGCATTTTGTCC
* ** * *
2027120 TAAAATCCACGACTCCGTGGCA-CCTTTTCTTCTCAAAGCCCGCGACTCAATGGCATTTTGTCC
1 TAAAGTCCACGACTTAGTGGCATCCTTTTC-T-TCAAAGCCCACGACTCAGTGGCATTTTGTCC
*
2027183 TAAAGTCCAC-AATTCAGTGGCATC
1 TAAAGTCCACGACTT-AGTGGCATC
2027207 TCCTCCTTAA
Statistics
Matches: 127, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
60 3 0.02
61 32 0.25
62 47 0.37
63 44 0.35
64 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (62 bp):
TAAAGTCCACGACTTAGTGGCATCCTTTTCTTCAAAGCCCACGACTCAGTGGCATTTTGTCC
Found at i:2027259 original size:92 final size:90
Alignment explanation
Indices: 2027147--2027325 Score: 279
Period size: 92 Copynumber: 2.0 Consensus size: 90
2027137 TGGCACCTTT
*
2027147 TCTTCTCAAAGCCCGCGACTCAATGGCATTTTGTCCT-AAAGTCCACAATTCAGTGGCATCTCCT
1 TCTTCTCAAAGCCCACGACTCAATGGCATTTTGTCCTAAAAGTCCACAATTCAGTGGCATC-CCT
2027211 CCTTAAAGTCCACGACTCAATGGCAATC
65 --TTAAAGTCCACGACTCAATGGCAATC
* *
2027239 TCTTTTCAAAGCCCACGACTCAGTGGCATTTTGTCCTAAAAGTCCACAATTCAGTGGCATCCCTT
1 TCTTCTCAAAGCCCACGACTCAATGGCATTTTGTCCTAAAAGTCCACAATTCAGTGGCATCCCTT
* *
2027304 TTAAGTCCACGACTCAGTGGCA
66 TAAAGTCCACGACTCAATGGCA
2027326 TCAAAGTCCA
Statistics
Matches: 81, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
90 21 0.26
92 37 0.46
93 23 0.28
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.28
Consensus pattern (90 bp):
TCTTCTCAAAGCCCACGACTCAATGGCATTTTGTCCTAAAAGTCCACAATTCAGTGGCATCCCTT
TAAAGTCCACGACTCAATGGCAATC
Found at i:2027490 original size:34 final size:34
Alignment explanation
Indices: 2027450--2027879 Score: 288
Period size: 27 Copynumber: 13.7 Consensus size: 34
2027440 GTGGCACCCG
*
2027450 TTTAAGCCCACAACTCTGTGGCACTCTTTTTCCT
1 TTTAAGCCCACAACTCCGTGGCACTCTTTTTCCT
* * * *
2027484 TCTAAGCCCACAACACTGTGGCAC-CTTCTT--T
1 TTTAAGCCCACAACTCCGTGGCACTCTTTTTCCT
** *
2027515 TCAAAGCCCACAACTCCGTGGCACCCTTTTTCCT
1 TTTAAGCCCACAACTCCGTGGCACTCTTTTTCCT
* *
2027549 TTTAAGTCCACGACTCCGTGGCACTC---TT--T
1 TTTAAGCCCACAACTCCGTGGCACTCTTTTTCCT
*
2027578 TTAAAGCCCACAACTCCGTGGCA--C-----CCT
1 TTTAAGCCCACAACTCCGTGGCACTCTTTTTCCT
** * * *
2027605 TTTAAGTGCACGACTCCGTGGCACCCTTTTTTCT
1 TTTAAGCCCACAACTCCGTGGCACTCTTTTTCCT
*
2027639 TTTAAAGCCCACAACTACGTGGCACTC-TTTTCCT
1 TTT-AAGCCCACAACTCCGTGGCACTCTTTTTCCT
* * *
2027673 TTTAAGTCCACAACTCTGTGGCA--C-----CAT
1 TTTAAGCCCACAACTCCGTGGCACTCTTTTTCCT
2027700 TTTAAGCCCACAACTCCGTGGCACTCTTTTTCCT
1 TTTAAGCCCACAACTCCGTGGCACTCTTTTTCCT
* * *
2027734 TCTAAGTCCACAACTCCGTGGCA--C-----CCG
1 TTTAAGCCCACAACTCCGTGGCACTCTTTTTCCT
2027761 TTTAAGCCCACAACTCCGTGGCA--C-----CCT
1 TTTAAGCCCACAACTCCGTGGCACTCTTTTTCCT
* * * * *
2027788 TTTAAGTCCACGACTCCATGGAACCCTTTTTTCCT
1 TTTAAGCCCACAACTCCGTGGCACTC-TTTTTCCT
* *
2027823 TTAAAGCCCACAACTACGTGGCACTC-TTTTCCT
1 TTTAAGCCCACAACTCCGTGGCACTCTTTTTCCT
* *
2027856 TTTAAGTCCACGACTCCGTGGCAC
1 TTTAAGCCCACAACTCCGTGGCAC
2027880 CTTCTTCTAA
Statistics
Matches: 314, Mismatches: 54, Indels: 57
0.74 0.13 0.13
Matches are distributed among these distances:
27 89 0.28
29 24 0.08
31 25 0.08
32 6 0.02
33 49 0.16
34 81 0.26
35 40 0.13
ACGTcount: A:0.21, C:0.35, G:0.14, T:0.30
Consensus pattern (34 bp):
TTTAAGCCCACAACTCCGTGGCACTCTTTTTCCT
Found at i:2027503 original size:61 final size:62
Alignment explanation
Indices: 2027341--2027790 Score: 442
Period size: 61 Copynumber: 7.2 Consensus size: 62
2027331 GTCCACGACA
* * *
2027341 CCGTGGCAC-CTTTTTCTTTCAAAGTCCACAACTCTGTGGTACCTCCTTTTCAAAGCCCACAACT
1 CCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCTGTGGCA-C-CCTTTT-AAAGCCCACAACT
* * * *
2027405 ACGTGGCACT-ATTTTCCTT-TCAAGCCCACAACTCTGTGGCACCCGTTT-AAGCCCACAACT
1 CCGTGGCACTCTTTTTCCTTCT-AAGTCCACAACTCTGTGGCACCCTTTTAAAGCCCACAACT
* * *
2027465 CTGTGGCACTCTTTTTCCTTCTAAGCCCACAACACTGTGGCACCTTCTTTTCAAAGCCCACAACT
1 CCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCTGTGGCACC--CTTTT-AAAGCCCACAACT
* * * * *
2027530 CCGTGGCACCCTTTTTCCTTTTAAGTCCACGACTCCGTGGCACTCTTTTTAAAGCCCACAACT
1 CCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCTGTGGCAC-CCTTTTAAAGCCCACAACT
* * * *
2027593 CCGTGGCA--C-----CCTTTTAAGTGCACGACTCCGTGGCACCCTTTTTTCTTTTAAAGCCCAC
1 CCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCTGTGGCA-CC------CTTTTAAAGCCCAC
2027651 AACT
59 AACT
* * *
2027655 ACGTGGCACTC-TTTTCCTTTTAAGTCCACAACTCTGTGGCACCATTTT-AAGCCCACAACT
1 CCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCTGTGGCACCCTTTTAAAGCCCACAACT
* *
2027715 CCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCCGTTT-AAGCCCACAACT
1 CCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCTGTGGCACCCTTTTAAAGCCCACAACT
*
2027776 CCGTGGCACCCTTTT
1 CCGTGGCACTCTTTT
2027791 AAGTCCACGA
Statistics
Matches: 330, Mismatches: 33, Indels: 49
0.80 0.08 0.12
Matches are distributed among these distances:
56 26 0.08
57 1 0.00
60 42 0.13
61 93 0.28
62 30 0.09
63 26 0.08
64 38 0.12
65 48 0.15
66 1 0.00
67 2 0.01
68 23 0.07
ACGTcount: A:0.21, C:0.35, G:0.14, T:0.30
Consensus pattern (62 bp):
CCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCTGTGGCACCCTTTTAAAGCCCACAACT
Found at i:2027748 original size:156 final size:152
Alignment explanation
Indices: 2027333--2027790 Score: 498
Period size: 156 Copynumber: 2.9 Consensus size: 152
2027323 GCATCAAAGT
* * *
2027333 CCACGACACCGTGGCACCTTTTTCTTTCAAAGTCCACAACTCTGTGGTACCTCCTTTTCAAAGCC
1 CCACAACA-CGTGGCACC-TTTTCTTT-TAAGTCCACAACTCTGTGGCACCTCCTTTT--AAGCC
* * *
2027398 CACAACTACGTGGCACTATTTTCCTTTCAAGCCCACAACTCTGTGGCACCCGTTTAAGCCCACAA
61 CACAACTCCGTGGCACTCTTTTCCTTT-AAGCCCACAACTCCGTGGCACCCGTTTAAGCCCACAA
* *
2027463 CTCTGTGGCACTCTTTTTCCTTCTAAGC
125 CTCCGTGGCACCCTTTTTCCTTCTAAGC
* *
2027491 CCACAACACTGTGGCACC--TTCTTTTCAAAGCCCACAACTCCGTGGCACCCTTTTTCCTTTTAA
1 CCACAACAC-GTGGCACCTTTTCTTTT--AAGTCCACAACTCTGTGGCA-CC----TCCTTTTAA
* * * * **
2027554 GTCCACGACTCCGTGGCACTC-TTT--TTAAAGCCCACAACTCCGTGGCACCCTTTTAAGTGCAC
58 GCCCACAACTCCGTGGCACTCTTTTCCTTTAAGCCCACAACTCCGTGGCACCCGTTTAAGCCCAC
* * *
2027616 GACTCCGTGGCACCCTTTTTTCTTTTAAAGC
123 AACTCCGTGGCACCCTTTTTCCTTCT-AAGC
*
2027647 CCACAACTACGTGGCACTCTTTTCCTTTTAAGTCCACAACTCTGTGGCA-C-CATTTTAAGCCCA
1 CCACAAC-ACGTGGCAC-CTTTT-CTTTTAAGTCCACAACTCTGTGGCACCTCCTTTTAAGCCCA
*
2027710 CAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCCGTTTAAGCCCACAAC
63 CAACTCCGTGGCACTC-TTTTCCTT-TAAGCCCACAACTCCGTGGCACCCGTTTAAGCCCACAAC
2027775 TCCGTGGCACCCTTTT
126 TCCGTGGCACCCTTTT
2027791 AAGTCCACGA
Statistics
Matches: 251, Mismatches: 30, Indels: 40
0.78 0.09 0.12
Matches are distributed among these distances:
151 26 0.10
153 3 0.01
155 60 0.24
156 87 0.35
157 6 0.02
158 36 0.14
159 21 0.08
160 5 0.02
161 7 0.03
ACGTcount: A:0.21, C:0.35, G:0.14, T:0.30
Consensus pattern (152 bp):
CCACAACACGTGGCACCTTTTCTTTTAAGTCCACAACTCTGTGGCACCTCCTTTTAAGCCCACAA
CTCCGTGGCACTCTTTTCCTTTAAGCCCACAACTCCGTGGCACCCGTTTAAGCCCACAACTCCGT
GGCACCCTTTTTCCTTCTAAGC
Found at i:2027828 original size:183 final size:187
Alignment explanation
Indices: 2027453--2027897 Score: 659
Period size: 183 Copynumber: 2.4 Consensus size: 187
2027443 GCACCCGTTT
* * * *
2027453 AAGCCCACAACT-CTGTGGCACTCTTTTTCCTTCTAAGCCCACAACACTGTGGCACCTTCTTTTC
1 AAGCCCACAACTAC-GTGGCACTC-TTTTCCTTTTAAGTCCACAACTCTGTGGCACC-TATTTT-
* * **
2027517 AAAGCCCACAACTCCGTGGCACCCTTTTTCCTTTTAAGTCCACGACTCCGTGGCACTCTTTTTAA
62 AAAGCCCACAACTCCGTGGCACCCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACTCCGTTTAA
* * * *
2027582 AGCCCACAACTCCGTGGCACCCTTTTAAGTGCACGACTCCGTGGCACCCTTTTTTCTTTTA
127 AGCCCACAACTCCGTGGCACCCTTTTAAGTCCACGACTCCATGGAACCCTTTTTTCCTTTA
2027643 AAGCCCACAACTACGTGGCACTCTTTTCCTTTTAAGTCCACAACTCTGTGGCACC-ATTTT-AAG
1 AAGCCCACAACTACGTGGCACTCTTTTCCTTTTAAGTCCACAACTCTGTGGCACCTATTTTAAAG
*
2027706 CCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCAC-CCGTTT-AAGCC
66 CCCACAACTCCGTGGCACCCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACTCCGTTTAAAGCC
2027769 CACAACTCCGTGGCACCCTTTTAAGTCCACGACTCCATGGAACCCTTTTTTCCTTTA
131 CACAACTCCGTGGCACCCTTTTAAGTCCACGACTCCATGGAACCCTTTTTTCCTTTA
* *
2027826 AAGCCCACAACTACGTGGCACTCTTTTCCTTTTAAGTCCACGACTCCGTGGCACCT-TCTTCTAA
1 AAGCCCACAACTACGTGGCACTCTTTTCCTTTTAAGTCCACAACTCTGTGGCACCTAT-TT-TAA
2027890 AGCCCACA
64 AGCCCACA
2027898 CAAGTCAGTG
Statistics
Matches: 235, Mismatches: 15, Indels: 14
0.89 0.06 0.05
Matches are distributed among these distances:
183 112 0.48
184 6 0.03
185 53 0.23
186 9 0.04
187 4 0.02
189 29 0.12
190 21 0.09
191 1 0.00
ACGTcount: A:0.21, C:0.35, G:0.14, T:0.30
Consensus pattern (187 bp):
AAGCCCACAACTACGTGGCACTCTTTTCCTTTTAAGTCCACAACTCTGTGGCACCTATTTTAAAG
CCCACAACTCCGTGGCACCCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACTCCGTTTAAAGCC
CACAACTCCGTGGCACCCTTTTAAGTCCACGACTCCATGGAACCCTTTTTTCCTTTA
Found at i:2027991 original size:30 final size:32
Alignment explanation
Indices: 2027873--2027991 Score: 154
Period size: 33 Copynumber: 3.7 Consensus size: 32
2027863 CCACGACTCC
*
2027873 GTGGC-ACCTTCTTCTAAAGCCCACACAAGTCA
1 GTGGCAACC-TCTTCTAAAGCCCACACAAGTCG
* *
2027905 GTGGCAACCTTCTTCCAAAGCCTACACAAGTCG
1 GTGGCAACC-TCTTCTAAAGCCCACACAAGTCG
*
2027938 GTGGCAACCACTCTCTAAAGCCCACACAAGTCG
1 GTGGCAACCTCT-TCTAAAGCCCACACAAGTCG
2027971 GTGGCAACC-CTTCT-AAGCCCA
1 GTGGCAACCTCTTCTAAAGCCCA
2027992 ATATAGCTGG
Statistics
Matches: 79, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
30 7 0.09
31 3 0.04
32 9 0.11
33 60 0.76
ACGTcount: A:0.28, C:0.35, G:0.18, T:0.19
Consensus pattern (32 bp):
GTGGCAACCTCTTCTAAAGCCCACACAAGTCG
Found at i:2028042 original size:49 final size:49
Alignment explanation
Indices: 2027984--2028315 Score: 408
Period size: 49 Copynumber: 6.7 Consensus size: 49
2027974 GCAACCCTTC
* * *
2027984 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
2028033 TAAGTCCAATGTAGCTGCCCTTGACTCAGCACATTGGCACC-TCACCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
2028081 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA-C--CA---T
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * *
2028124 TAAGTCCAATATAGCTAGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
2028173 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGTGGCACCTTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACA-T--TGGCACC--TT-CATCTT
* *
2028228 TAAGTTCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC--TT-CATCTT
*
2028280 TAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTG
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTG
2028316 ACATCATTTT
Statistics
Matches: 252, Mismatches: 19, Indels: 21
0.86 0.07 0.07
Matches are distributed among these distances:
43 36 0.14
44 1 0.00
46 3 0.01
47 1 0.00
48 44 0.17
49 67 0.27
50 1 0.00
52 60 0.24
54 3 0.01
55 36 0.14
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (49 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
Found at i:2028208 original size:92 final size:93
Alignment explanation
Indices: 2027984--2028324 Score: 357
Period size: 104 Copynumber: 3.5 Consensus size: 93
2027974 GCAACCCTTC
* * * *
2027984 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA--TCCA--TTTAAGTCCAATGTAGCT
* * * *
2028049 GCCCTTGACTCAGCACATTGGCACC-TCACCTT
62 G-CCTTGAATCAGCATATTGGCACCTTTATCTT
* *
2028081 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA-CCA-TTAAGTCCAATATAGCTAGCC
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCCATTTAAGTCCAATGTAGCT-GCC
2028144 TTGAATCAGCATATTGGCACCTTTATCTT
65 TTGAATCAGCATATTGGCACCTTTATCTT
*
2028173 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGTGGCACCTTTTCCATCTTTAAGTTCAAT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACA-T--TGGCA-----TCCA--TTTAAGTCCAAT
2028238 GTAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
56 GTAGCT-GCCTTGAATCAGCATATTGGCACC-TTT--ATCTT
* *
2028280 TAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACAT-CATTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCCATTT
2028325 TTCTCATCTT
Statistics
Matches: 211, Mismatches: 16, Indels: 35
0.81 0.06 0.13
Matches are distributed among these distances:
91 37 0.18
92 38 0.18
93 1 0.00
94 2 0.01
95 5 0.02
96 3 0.01
97 35 0.17
98 2 0.01
99 1 0.00
101 3 0.01
104 43 0.20
105 3 0.01
106 1 0.00
107 37 0.18
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.32
Consensus pattern (93 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCCATTTAAGTCCAATGTAGCTGCCT
TGAATCAGCATATTGGCACCTTTATCTT
Found at i:2028267 original size:52 final size:52
Alignment explanation
Indices: 2028123--2028378 Score: 302
Period size: 55 Copynumber: 4.9 Consensus size: 52
2028113 ATTGGCACCA
* *
2028123 TTAAGTCCAATATAGCTAGCCTTGAATCAGCATATTGGCACC-TTT--ATCT
1 TTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCT
*
2028172 TTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGTGGCACCTTTTCCATCT
1 TTAAGTCCAATGTAGCTGGCCTTGAATCAGCATA-T--TGGCACCTTTTCCATCT
*
2028227 TTAAGTTCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCT
1 TTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCT
* * * *
2028279 TTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCATTTTTCTCATCT
1 TTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCA-C-CTTTTC-CATCT
* * * * * * *
2028334 TTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTT
1 TTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTT
2028379 ATCACTTTTC
Statistics
Matches: 179, Mismatches: 19, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
49 31 0.17
50 1 0.01
52 62 0.35
53 7 0.04
54 6 0.03
55 72 0.40
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (52 bp):
TTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCT
Found at i:2028313 original size:107 final size:104
Alignment explanation
Indices: 2028123--2028381 Score: 331
Period size: 107 Copynumber: 2.5 Consensus size: 104
2028113 ATTGGCACCA
2028123 TTAAGTCCAATATAGCTAGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGC
1 TTAAGTCCAATATAGCTAGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGC
2028188 TGGCCTTGAATCAGCACATTGGTGGCACCTTTTCCATCT
66 TGGCCTTGAATCAGCACATTGGTGGCACCTTTTCCATCT
* * * *
2028227 TTAAGTTCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGT
1 TTAAGTCCAATATAGCTAGCCTTGAATCAGCATATTGGCACC-TTT--ATCTTTAAGTCCAATGT
**** *
2028292 AGCTGGCCTTGAATCAGCACATTGACATCA-TTTTTCTCATCT
63 AGCTGGCCTTGAATCAGCACATTGGTGGCACCTTTTC-CATCT
* * * * * * *
2028334 TTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATC
1 TTAAGTCCAATATAGCTAGCCTTGAATCAGCATATTGGCACCTTTATC
2028382 ACTTTTCTCA
Statistics
Matches: 134, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
104 42 0.31
105 3 0.02
106 8 0.06
107 81 0.60
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (104 bp):
TTAAGTCCAATATAGCTAGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGC
TGGCCTTGAATCAGCACATTGGTGGCACCTTTTCCATCT
Found at i:2028362 original size:55 final size:52
Alignment explanation
Indices: 2028123--2028338 Score: 267
Period size: 52 Copynumber: 4.1 Consensus size: 52
2028113 ATTGGCACCA
* * * * *
2028123 TTAAGTCCAATATAGCTAGCCTTGAATCAGCATATTGGCACC-TTT--ATCT
1 TTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACACCTTTTCCATCT
* *
2028172 TTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGTGGCACCTTTTCCATCT
1 TTAAGTTCAATGTAGCTGGCCTTGAATCAGCACA-T--TGACACCTTTTCCATCT
* *
2028227 TTAAGTTCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCT
1 TTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACACCTTTTCCATCT
*
2028279 TTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCATTTTTCTCATCT
1 TTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACA-C-CTTTTC-CATCT
2028334 TTAAG
1 TTAAG
2028339 CCCAATATCG
Statistics
Matches: 150, Mismatches: 8, Indels: 12
0.88 0.05 0.07
Matches are distributed among these distances:
49 31 0.21
50 1 0.01
52 62 0.41
53 4 0.03
54 6 0.04
55 46 0.31
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.36
Consensus pattern (52 bp):
TTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACACCTTTTCCATCT
Found at i:2028436 original size:67 final size:68
Alignment explanation
Indices: 2028328--2028454 Score: 175
Period size: 67 Copynumber: 1.9 Consensus size: 68
2028318 ATCATTTTTC
* * * *
2028328 TCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCA-CTTTTCTCA
1 TCATCTTTAAGCCCAATATCGCTAGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
2028392 TCT
66 TCT
* * * *
2028395 TCATCTTTAAGTCCAATATTGCTAGCCTTGAATCAGCATATTGGCACCTTCATCATCTTT
1 TCATCTTTAAGCCCAATATCGCTAGCCGTGAATCAACATATTGGCACCTTCATCATCTTT
2028455 AAAACCCAAT
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
67 47 0.92
68 4 0.08
ACGTcount: A:0.24, C:0.25, G:0.12, T:0.39
Consensus pattern (68 bp):
TCATCTTTAAGCCCAATATCGCTAGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
TCT
Found at i:2029269 original size:20 final size:19
Alignment explanation
Indices: 2029244--2029281 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 19
2029234 ATTTCAACGA
2029244 TTTGTATCGATACATATTTT
1 TTTGTATCGATACA-ATTTT
2029264 TTTGTATCGATACAATTT
1 TTTGTATCGATACAATTT
2029282 AAGCTACTGC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.26, C:0.11, G:0.11, T:0.53
Consensus pattern (19 bp):
TTTGTATCGATACAATTTT
Found at i:2029338 original size:13 final size:13
Alignment explanation
Indices: 2029320--2029344 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2029310 ATCACTCAAA
2029320 TGTATCGATACAT
1 TGTATCGATACAT
2029333 TGTATCGATACA
1 TGTATCGATACA
2029345 CCGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2029409 original size:52 final size:52
Alignment explanation
Indices: 2029353--2029481 Score: 195
Period size: 52 Copynumber: 2.5 Consensus size: 52
2029343 CACCGATCTT
* * *
2029353 TGTATCGATACATGCAGGGAATTTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
* **
2029405 TGTATCGATACATGGAGGCAAATTTGCCCAGATGTATCGATACACTATTCAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
2029457 TGTATCGATACATGTAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
2029482 TCATATTTCG
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 70 1.00
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.31
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:2037728 original size:21 final size:21
Alignment explanation
Indices: 2037702--2037741 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
2037692 TACAAAGCAA
2037702 ATTGTATCGACACATTTACGG
1 ATTGTATCGACACATTTACGG
*
2037723 ATTGTATCGATACATTTAC
1 ATTGTATCGACACATTTAC
2037742 TCATGTATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (21 bp):
ATTGTATCGACACATTTACGG
Found at i:2037750 original size:20 final size:21
Alignment explanation
Indices: 2037702--2037756 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 21
2037692 TACAAAGCAA
* *
2037702 ATTGTATCGACACATTTACGG
1 ATTGTATCGATACATTTACGC
*
2037723 ATTGTATCGATACATTTACTC
1 ATTGTATCGATACATTTACGC
*
2037744 A-TGTATCAATACA
1 ATTGTATCGATACA
2037757 ATTTTCCAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
20 11 0.37
21 19 0.63
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (21 bp):
ATTGTATCGATACATTTACGC
Found at i:2037811 original size:21 final size:21
Alignment explanation
Indices: 2037787--2037841 Score: 67
Period size: 20 Copynumber: 2.7 Consensus size: 21
2037777 CATGATCTTC
*
2037787 TATCGATACATTTAAGACATG
1 TATCGATACATTTAACACATG
* **
2037808 TATCGATACA-TTCACTTATG
1 TATCGATACATTTAACACATG
2037828 TATCGATACATTTA
1 TATCGATACATTTA
2037842 TTAATTGTAT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
20 16 0.57
21 12 0.43
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.38
Consensus pattern (21 bp):
TATCGATACATTTAACACATG
Found at i:2040289 original size:13 final size:13
Alignment explanation
Indices: 2040271--2040295 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2040261 TACAATGAAC
2040271 ATGTATCGATACA
1 ATGTATCGATACA
2040284 ATGTATCGATAC
1 ATGTATCGATAC
2040296 TAAGCAGTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2042699 original size:260 final size:260
Alignment explanation
Indices: 2042238--2042757 Score: 1022
Period size: 260 Copynumber: 2.0 Consensus size: 260
2042228 TCATGTCGAC
*
2042238 AGTGTGACATGGACAAATAGCCAAATGGGAGTATGTTTGGTTAAATTGATCTAAGTTGGCTTGAG
1 AGTGTGACATGGACAAATAGCCAAATGGGAGTACGTTTGGTTAAATTGATCTAAGTTGGCTTGAG
2042303 TCCTAAGCAACCTTTGAAGAAGGTTTGGTTTTGAAGGTTTGATGAGGAAGCACCTCGAGTGCATT
66 TCCTAAGCAACCTTTGAAGAAGGTTTGGTTTTGAAGGTTTGATGAGGAAGCACCTCGAGTGCATT
2042368 TTTGAGCAGTTAATTTCGATCGAGGGGCTATTAGATTGGTTTTCAAAGGTTTTGGTATGAAAATA
131 TTTGAGCAGTTAATTTCGATCGAGGGGCTATTAGATTGGTTTTCAAAGGTTTTGGTATGAAAATA
2042433 GGTGAGTGTGGGCTATCTAAGTGCTTGGTGTGGGGAGCTGCCGATTGTGACTAGTTGTGACTAAG
196 GGTGAGTGTGGGCTATCTAAGTGCTTGGTGTGGGGAGCTGCCGATTGTGACTAGTTGTGACTAAG
2042498 AGTGTGACATGGACAAATAGCCAAATGGGAGTACGTTTGGTTAAATTGATCTAAGTTGGCTTGAG
1 AGTGTGACATGGACAAATAGCCAAATGGGAGTACGTTTGGTTAAATTGATCTAAGTTGGCTTGAG
2042563 TCCTAAGCAACCTTTGAAGAAGGTTTGGTTTTGAAGGTTTGATGAGGAAGCACCTCGAGTGCATT
66 TCCTAAGCAACCTTTGAAGAAGGTTTGGTTTTGAAGGTTTGATGAGGAAGCACCTCGAGTGCATT
2042628 TTTGAGCAGTTAATTTCGATCGAGGGGCTATTAGATTGGTTTTCAAAGGTTTTGGTATGAAAATA
131 TTTGAGCAGTTAATTTCGATCGAGGGGCTATTAGATTGGTTTTCAAAGGTTTTGGTATGAAAATA
*
2042693 GGTGAGTGTGGGCTATCTAAGTGCTTGGTGTGGGGAGCTGCCGGTTGTGACTAGTTGTGACTAAG
196 GGTGAGTGTGGGCTATCTAAGTGCTTGGTGTGGGGAGCTGCCGATTGTGACTAGTTGTGACTAAG
2042758 CAAGTTGGTT
Statistics
Matches: 258, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
260 258 1.00
ACGTcount: A:0.25, C:0.11, G:0.31, T:0.33
Consensus pattern (260 bp):
AGTGTGACATGGACAAATAGCCAAATGGGAGTACGTTTGGTTAAATTGATCTAAGTTGGCTTGAG
TCCTAAGCAACCTTTGAAGAAGGTTTGGTTTTGAAGGTTTGATGAGGAAGCACCTCGAGTGCATT
TTTGAGCAGTTAATTTCGATCGAGGGGCTATTAGATTGGTTTTCAAAGGTTTTGGTATGAAAATA
GGTGAGTGTGGGCTATCTAAGTGCTTGGTGTGGGGAGCTGCCGATTGTGACTAGTTGTGACTAAG
Found at i:2047705 original size:12 final size:12
Alignment explanation
Indices: 2047686--2047718 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
2047676 TCCGAGTCAA
2047686 CTTCATCATCAT
1 CTTCATCATCAT
2047698 -TATCATCATCAT
1 CT-TCATCATCAT
2047710 CTTCATCAT
1 CTTCATCAT
2047719 TGATGGTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 1 0.05
12 17 0.89
13 1 0.05
ACGTcount: A:0.27, C:0.30, G:0.00, T:0.42
Consensus pattern (12 bp):
CTTCATCATCAT
Found at i:2052149 original size:3 final size:3
Alignment explanation
Indices: 2052141--2052171 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
2052131 TGAGTCAACT
*
2052141 TCA TCA TCA TCA TCA TCA TCT TCA TCA TCA T
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA T
2052172 TGATGGTTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.29, C:0.32, G:0.00, T:0.39
Consensus pattern (3 bp):
TCA
Found at i:2055334 original size:13 final size:13
Alignment explanation
Indices: 2055316--2055341 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2055306 AATTTTATGG
2055316 TGTATCGATACAT
1 TGTATCGATACAT
2055329 TGTATCGATACAT
1 TGTATCGATACAT
2055342 ACTATGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2055338 original size:33 final size:32
Alignment explanation
Indices: 2055296--2055359 Score: 92
Period size: 33 Copynumber: 2.0 Consensus size: 32
2055286 TACAAGCCAA
**
2055296 TGTATCGATAAATTTTATGGTGTATCGATACAT
1 TGTATCGATAAATACTAT-GTGTATCGATACAT
*
2055329 TGTATCGATACATACTATGTGTATCGATACA
1 TGTATCGATAAATACTATGTGTATCGATACA
2055360 AGTTTAGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 13 0.46
33 15 0.54
ACGTcount: A:0.31, C:0.12, G:0.17, T:0.39
Consensus pattern (32 bp):
TGTATCGATAAATACTATGTGTATCGATACAT
Found at i:2055439 original size:20 final size:20
Alignment explanation
Indices: 2055414--2055479 Score: 74
Period size: 20 Copynumber: 3.6 Consensus size: 20
2055404 TCTTTTTCAA
2055414 GTATCGATACAATGCAACAT
1 GTATCGATACAATGCAACAT
2055434 GTATCGAT---A--C-A-AT
1 GTATCGATACAATGCAACAT
*
2055447 GTATCGATACTATGCAACAT
1 GTATCGATACAATGCAACAT
2055467 GTATCGATACAAT
1 GTATCGATACAAT
2055480 TAAATGTGTA
Statistics
Matches: 38, Mismatches: 1, Indels: 14
0.72 0.02 0.26
Matches are distributed among these distances:
13 10 0.26
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
18 1 0.03
19 1 0.03
20 22 0.58
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (20 bp):
GTATCGATACAATGCAACAT
Found at i:2055450 original size:13 final size:13
Alignment explanation
Indices: 2055432--2055456 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2055422 ACAATGCAAC
2055432 ATGTATCGATACA
1 ATGTATCGATACA
2055445 ATGTATCGATAC
1 ATGTATCGATAC
2055457 TATGCAACAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2055456 original size:33 final size:33
Alignment explanation
Indices: 2055414--2055479 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
2055404 TCTTTTTCAA
2055414 GTATCGATACAATGCAACATGTATCGATACAAT
1 GTATCGATACAATGCAACATGTATCGATACAAT
*
2055447 GTATCGATACTATGCAACATGTATCGATACAAT
1 GTATCGATACAATGCAACATGTATCGATACAAT
2055480 TAAATGTGTA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (33 bp):
GTATCGATACAATGCAACATGTATCGATACAAT
Found at i:2058740 original size:22 final size:22
Alignment explanation
Indices: 2058710--2058754 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
2058700 CTAAATAAGA
2058710 AAAACAAAAA-AAAAGAAAAAAG
1 AAAACAAAAATAAAA-AAAAAAG
* *
2058732 AAAATAAAAATGAAAAAAAAAG
1 AAAACAAAAATAAAAAAAAAAG
2058754 A
1 A
2058755 GAGGATGCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 17 0.85
23 3 0.15
ACGTcount: A:0.84, C:0.02, G:0.09, T:0.04
Consensus pattern (22 bp):
AAAACAAAAATAAAAAAAAAAG
Found at i:2058801 original size:16 final size:16
Alignment explanation
Indices: 2058782--2058817 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
2058772 AAAGTGCAGG
2058782 AAAAGA-AAAAATAGAA
1 AAAAGAGAAAAAT-GAA
2058798 AAAAGAGAAAAATGAA
1 AAAAGAGAAAAATGAA
2058814 AAAA
1 AAAA
2058818 AATGAAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.81, C:0.00, G:0.14, T:0.06
Consensus pattern (16 bp):
AAAAGAGAAAAATGAA
Found at i:2058824 original size:17 final size:17
Alignment explanation
Indices: 2058782--2058824 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
2058772 AAAGTGCAGG
2058782 AAAAGAAAAAATAGAAAA
1 AAAAG-AAAAATAGAAAA
*
2058800 AAGAGAAAAAT-GAAAA
1 AAAAGAAAAATAGAAAA
2058816 AAAATGAAA
1 AAAA-GAAA
2058825 GAAGATGAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 8 0.36
17 10 0.45
18 4 0.18
ACGTcount: A:0.79, C:0.00, G:0.14, T:0.07
Consensus pattern (17 bp):
AAAAGAAAAATAGAAAA
Found at i:2060292 original size:13 final size:13
Alignment explanation
Indices: 2060274--2060299 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2060264 AATTTTTTTG
2060274 TGTATCGATACAT
1 TGTATCGATACAT
2060287 TGTATCGATACAT
1 TGTATCGATACAT
2060300 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2060394 original size:20 final size:21
Alignment explanation
Indices: 2060346--2060401 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
2060336 AAATCCCAAT
**
2060346 AACATGTATCGATACATCTTT
1 AACATGTATCGATACATCTGC
**
2060367 TTCATGTATCGATACAT-TGC
1 AACATGTATCGATACATCTGC
2060387 AACATGTATCGATAC
1 AACATGTATCGATAC
2060402 TTTGAATTGT
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
20 14 0.48
21 15 0.52
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (21 bp):
AACATGTATCGATACATCTGC
Found at i:2062730 original size:21 final size:22
Alignment explanation
Indices: 2062696--2062736 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
2062686 GCTGGTTTTG
2062696 ATGAAAAACGAAGTAATTTGAA
1 ATGAAAAACGAAGTAATTTGAA
*
2062718 ATGAAAAAC-AAGTATTTTG
1 ATGAAAAACGAAGTAATTTG
2062737 CAAAAGATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.51, C:0.05, G:0.17, T:0.27
Consensus pattern (22 bp):
ATGAAAAACGAAGTAATTTGAA
Found at i:2070250 original size:89 final size:90
Alignment explanation
Indices: 2070099--2070359 Score: 352
Period size: 89 Copynumber: 2.9 Consensus size: 90
2070089 TTAGTGGAAA
* ** * *
2070099 CCACACATTCCTAATCATATCCTTTTCACCCAATCACTAGATGGTATTG-TAGCATCACAAAGCC
1 CCACACATCCCTAATCATATCCCCTTCATCCAACCACTAGATGGTATTGATAGCATCACAAAGCC
* *
2070163 TGATTTCCTT-AGGGCAGGGTATAGC
66 TAATTTCCTTGA-GGCAAGGTATAGC
*
2070188 CCACACATCCCTAATCATATCCCCTTCATCCAACCACTAGAAGGTATTGAT-GCATCACAAAGCC
1 CCACACATCCCTAATCATATCCCCTTCATCCAACCACTAGATGGTATTGATAGCATCACAAAGCC
* *
2070252 TAATTTTCTTGAGGCAAGGTGTAGC
66 TAATTTCCTTGAGGCAAGGTATAGC
* * *
2070277 CTACATATCCCTAATCATATCCCCTTCATCCAACCACTAGATGGTATTGATAG-ATCACAAAACC
1 CCACACATCCCTAATCATATCCCCTTCATCCAACCACTAGATGGTATTGATAGCATCACAAAGCC
2070341 TAATTTCCTTG-GTGCAAGG
66 TAATTTCCTTGAG-GCAAGG
2070360 GTGCTTCCCA
Statistics
Matches: 153, Mismatches: 15, Indels: 8
0.87 0.09 0.05
Matches are distributed among these distances:
88 1 0.01
89 149 0.97
90 3 0.02
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (90 bp):
CCACACATCCCTAATCATATCCCCTTCATCCAACCACTAGATGGTATTGATAGCATCACAAAGCC
TAATTTCCTTGAGGCAAGGTATAGC
Found at i:2071026 original size:40 final size:41
Alignment explanation
Indices: 2070937--2071039 Score: 120
Period size: 40 Copynumber: 2.5 Consensus size: 41
2070927 GTCTCACTCT
* **
2070937 AGACTTCTTTATCTTTTGTTTACTTGTCGGCTCAAACTCAAG
1 AGACTTCTTTATCTTTTGTCTA-TTGTCAACTCAAACTCAAG
* * *
2070979 AGGCTTCTTTATCCTTTGTCT-TTGTCAACTCACACT-AGAG
1 AGACTTCTTTATCTTTTGTCTATTGTCAACTCAAACTCA-AG
2071019 AGACTTCTTTATCTTTTGTCT
1 AGACTTCTTTATCTTTTGTCT
2071040 GCCCATATAC
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
39 1 0.02
40 33 0.63
42 18 0.35
ACGTcount: A:0.19, C:0.22, G:0.14, T:0.45
Consensus pattern (41 bp):
AGACTTCTTTATCTTTTGTCTATTGTCAACTCAAACTCAAG
Found at i:2071065 original size:42 final size:42
Alignment explanation
Indices: 2071016--2071680 Score: 338
Period size: 42 Copynumber: 15.8 Consensus size: 42
2071006 ACTCACACTA
*** *
2071016 GAGAGACTTCTTTATCTTTTGTCTGCCCATATACTCAAACCC
1 GAGAGACTTCTTTATCTTTTGTCTGCCCATCGGCTCAGACCC
* * * * * * * *
2071058 GGGAGACTTCTATATCCTTTGTCTACCCGTCGGCTTAGGCTC
1 GAGAGACTTCTTTATCTTTTGTCTGCCCATCGGCTCAGACCC
* * * * *
2071100 GAGAGATTTCTTCATCTTTTGTCTGCTCATCGGCTCAAACTC
1 GAGAGACTTCTTTATCTTTTGTCTGCCCATCGGCTCAGACCC
* * * * * ** *
2071142 TAGAGACTTTTTTATCATTTGTCGGCTCATTAGCTTAGACCC
1 GAGAGACTTCTTTATCTTTTGTCTGCCCATCGGCTCAGACCC
* * * * * * * *
2071184 -AGGAGACTTCTTCATCTTTTGTTTGCTCGTTGGCTTAGGCCT
1 GA-GAGACTTCTTTATCTTTTGTCTGCCCATCGGCTCAGACCC
* * * * * * *
2071226 GGGAGATTTCTTTATGTTTTGTTTGCCTATCGACTCAGGCCC
1 GAGAGACTTCTTTATCTTTTGTCTGCCCATCGGCTCAGACCC
* * * ** * *
2071268 AAGAGACTTCTTTATCCTTTGTCTGCCCGTTAGCTTAGACCT
1 GAGAGACTTCTTTATCTTTTGTCTGCCCATCGGCTCAGACCC
* * * *
2071310 GAGAGACTTTTTTAT-TTTTGTCTGCCTATCAGCTCAAACCC
1 GAGAGACTTCTTTATCTTTTGTCTGCCCATCGGCTCAGACCC
* * * *
2071351 GAGAGACTTCTCTAT-TATTTATCTACCCATCGGCTCAGACCT
1 GAGAGACTTCTTTATCT-TTTGTCTGCCCATCGGCTCAGACCC
* * * * * *
2071393 GGGAAACTTCTTTATCTTTTGTCTACCCGTCAGCTCAAACCC
1 GAGAGACTTCTTTATCTTTTGTCTGCCCATCGGCTCAGACCC
* * * *
2071435 AAGAGACTTCTATATCCTTTGTCTGCCAATCGGCTCA-AGCCC
1 GAGAGACTTCTTTATCTTTTGTCTGCCCATCGGCTCAGA-CCC
** * * *
2071477 G-GAAGACTT-TTTCATCTTTTGTCTG-TTAGTCAGCTTAGACTC
1 GAG-AGACTTCTTT-ATCTTTTGTCTGCCCA-TCGGCTCAGACCC
* * * * ** **
2071519 GAGAGACTTCTTTATCATTTGTCAGCTCGTCAACTCA-AGCTT
1 GAGAGACTTCTTTATCTTTTGTCTGCCCATCGGCTCAGA-CCC
* * * * * *
2071561 GGGAGACTACATTATCTTTTGTCTGCCCATTGGACTTAGGCCC
1 GAGAGACTTCTTTATCTTTTGTCTGCCCATCGG-CTCAGACCC
* * * ** * * *
2071604 AAGAGACTTCTTTATCTTTTATCTACCTTTCTGCTTAGACCA
1 GAGAGACTTCTTTATCTTTTGTCTGCCCATCGGCTCAGACCC
* * * *
2071646 AAGAGACTTCTTTATCCTTTGTCTACCTATCGGCT
1 GAGAGACTTCTTTATCTTTTGTCTGCCCATCGGCT
2071681 TAGGCTCAGG
Statistics
Matches: 461, Mismatches: 147, Indels: 30
0.72 0.23 0.05
Matches are distributed among these distances:
41 40 0.09
42 387 0.84
43 34 0.07
ACGTcount: A:0.20, C:0.25, G:0.17, T:0.37
Consensus pattern (42 bp):
GAGAGACTTCTTTATCTTTTGTCTGCCCATCGGCTCAGACCC
Found at i:2073235 original size:166 final size:167
Alignment explanation
Indices: 2072981--2073285 Score: 413
Period size: 166 Copynumber: 1.8 Consensus size: 167
2072971 GAGTTATTGA
* * *
2072981 TTTTCTTTGAAATTTTTCCTATTTTCAAAATATAGAGTTTTCTACTCCGTAAATATTTTCAAGGA
1 TTTTCTTTGAAATTTCTCCTATTTTCAAAATACAGAGTTTTCTACTCCGTAAAAATTTTCAAGGA
* * * * * *
2073046 GATTTTTCTTGGCTTTTAATTTTTACAATTCATCAAATATTACTATTTAATTCATATTAATTCAA
66 GATTTTTCATCGATTTAAATTTTTAAAATTCATCAAATATTACTATTTAATTCATATTAAATCAA
2073111 TTTTCAAAATTTTTTTCATTTTCATGAGTTGAGATTT
131 TTTTCAAAATTTTTTTCATTTTCATGAGTTGAGATTT
* *
2073148 TTTTCTTTGAAA-TTCTCCTA-TTTCTAAAATACAGAGTTTTCTTCT-C-TAAAAATTTTTTAAG
1 TTTTCTTTGAAATTTCTCCTATTTTC-AAAATACAGAGTTTTCTACTCCGTAAAAA-TTTTCAAG
*
2073209 GAGGA-TTTTCATCGATTTAAAATTTTTAAAATTCATCAAATATTATTATTTAATTCATATTAAA
64 GA-GATTTTTCATCGATTT-AAATTTTTAAAATTCATCAAATATTACTATTTAATTCATATTAAA
* *
2073273 TCACTTTTGAAAA
127 TCAATTTTCAAAA
2073286 ATTAATTTAT
Statistics
Matches: 120, Mismatches: 14, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
164 5 0.04
165 24 0.20
166 79 0.66
167 12 0.10
ACGTcount: A:0.32, C:0.12, G:0.07, T:0.49
Consensus pattern (167 bp):
TTTTCTTTGAAATTTCTCCTATTTTCAAAATACAGAGTTTTCTACTCCGTAAAAATTTTCAAGGA
GATTTTTCATCGATTTAAATTTTTAAAATTCATCAAATATTACTATTTAATTCATATTAAATCAA
TTTTCAAAATTTTTTTCATTTTCATGAGTTGAGATTT
Found at i:2073318 original size:166 final size:166
Alignment explanation
Indices: 2072981--2073326 Score: 396
Period size: 166 Copynumber: 2.1 Consensus size: 166
2072971 GAGTTATTGA
* * *
2072981 TTTTCTTTGAAATTTTTCCTATTTTCAAAATATAGAGTTTTCTACTCCGTAAATATTTTCAAGGA
1 TTTTCTTTGAAA-TTCTCCTATTTTCAAAATACAGAGTTTTCTACTCCGTAAAAATTTTCAAGGA
* * * * * *
2073046 GATTTTTCTTGGCTTTTAATTTTTACAATTCATCAAATATTACTATTTAATTCATATTAATTCAA
65 GATTTTTCATCGATTTAAATTTTTAAAATTCATCAAATATTACTATTTAATTCATATTAAATCAA
* ** * *
2073111 TTTTCAAAATTTTTTTCATTTTCATGAGTTGAGATTT
130 TTTTAAAAATTAATTTCATTTTCATAAGTTGAGAATT
* *
2073148 TTTTCTTTGAAATTCTCCTA-TTTCTAAAATACAGAGTTTTCTTCT-C-TAAAAATTTTTTAAGG
1 TTTTCTTTGAAATTCTCCTATTTTC-AAAATACAGAGTTTTCTACTCCGTAAAAA-TTTTCAAGG
*
2073210 AGGA-TTTTCATCGATTTAAAATTTTTAAAATTCATCAAATATTATTATTTAATTCATATTAAAT
64 A-GATTTTTCATCGATTT-AAATTTTTAAAATTCATCAAATATTACTATTTAATTCATATTAAAT
* * ***
2073274 CACTTTTGAAAAATTAATTT-ATTTTTATAAGTTTTTAATT
127 CAATTTT-AAAAATTAATTTCATTTTCATAAGTTGAGAATT
*
2073314 TTTTCCTTGAAAT
1 TTTTCTTTGAAAT
2073327 GCCCTTATTT
Statistics
Matches: 151, Mismatches: 23, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
164 5 0.03
165 24 0.16
166 101 0.67
167 21 0.14
ACGTcount: A:0.32, C:0.11, G:0.07, T:0.50
Consensus pattern (166 bp):
TTTTCTTTGAAATTCTCCTATTTTCAAAATACAGAGTTTTCTACTCCGTAAAAATTTTCAAGGAG
ATTTTTCATCGATTTAAATTTTTAAAATTCATCAAATATTACTATTTAATTCATATTAAATCAAT
TTTAAAAATTAATTTCATTTTCATAAGTTGAGAATT
Found at i:2075914 original size:151 final size:152
Alignment explanation
Indices: 2075490--2076122 Score: 581
Period size: 154 Copynumber: 4.1 Consensus size: 152
2075480 GCATAGGTTC
* * *** *
2075490 ATCCTTTTCAAGTCCTTTAGGGGCACCGGGATACTTTGACGTC-AAGGTATCCCCTAGAA-GCAT
1 ATCCTTTTTAAGTCCTTTAGGGGTATTAGG-TACTTTCACGTCGAAGGTAT--CCTA-AAGGCAT
* * * ** * * *
2075553 TTTCGTAATTTTCTAGAACTAATTCCTAGGTTACCAC-CAGGTTTGCTTTTATGCTGAAGTTGGG
62 TTTCATAATTTTTTA-AACTAAATCCTAGGTTGTCACTC-GGTTCGCTTTTATGCCGAAGGTGGG
* * *
2075617 TATTTAGGATAGGTTCGTCTCAGCTATA
125 TATTTAGGATAGGTTCATCCCATCTATA
*
2075645 A-CCTTTTTAAGTCCTTTAGGAGTATTAGGATACTTTCACGTCGAAGGTATCTCTAAAGGCATTT
1 ATCCTTTTTAAGTCCTTTAGGGGTATTAGG-TACTTTCACGTCGAAGGTATC-CTAAAGGCATTT
* * * * * * * * *
2075709 TCGTAATTTTTTAAAATCAATTGCTAGGTTGTTA-TCGAGTCCACTTTTATGCCGAAGGTGTGCA
64 TCATAATTTTTTAAACT-AAATCCTAGGTTGTCACTCG-GTTCGCTTTTATGCCGAAGGTGGGTA
*
2075773 TTTTGGATAGGTTCATCCCATCTA-A
127 TTTAGGATAGGTTCATCCCATCTATA
*
2075798 ATCCTTTTT-AGATCCTTTAGGGGTATT-GAGTACTTTTACGTCGAAGGTATCC-AAAGGCATTT
1 ATCCTTTTTAAG-TCCTTTAGGGGTATTAG-GTACTTTCACGTCGAAGGTATCCTAAAGGCATTT
* * * * *
2075860 TCATAATTTTTCTAAAGCTAAGTCCTTGGTCGTCACT-GGTTTGCTTTTATGCCGAATGTGGGTA
64 TCATAATTTTT-TAAA-CTAAATCCTAGGTTGTCACTCGGTTCGCTTTTATGCCGAAGGTGGGTA
*
2075924 TTTAGGATAGGTTCATCCTATCTA-A
127 TTTAGGATAGGTTCATCCCATCTATA
* * * * *
2075949 ATCCTTTTTAGGTCCTTTAAGGGTACTAGGTACTTTCACGTCAAAGGTATCCCCTAGAGGCATTT
1 ATCCTTTTTAAGTCCTTTAGGGGTATTAGGTACTTTCACGTCGAAGGTAT--CCTAAAGGCATTT
* * *
2076014 T-AGTAATTTTTTTAAAACCAAATCCTAAGTTGTCACTGGGTTCGCTTTTATGCCGAAGGTGGGT
64 TCA-TAA-TTTTTT-AAACTAAATCCTAGGTTGTCACTCGGTTCGCTTTTATGCCGAAGGTGGGT
* * * *
2076078 AATTAAGATAAGTTCATCCCTTCTATA
126 ATTTAGGATAGGTTCATCCCATCTATA
2076105 AT-CTTTTTAAGTCCTTTA
1 ATCCTTTTTAAGTCCTTTA
2076123 AGATCTCCGA
Statistics
Matches: 396, Mismatches: 60, Indels: 44
0.79 0.12 0.09
Matches are distributed among these distances:
151 104 0.26
152 19 0.05
153 37 0.09
154 158 0.40
155 75 0.19
156 3 0.01
ACGTcount: A:0.24, C:0.18, G:0.19, T:0.38
Consensus pattern (152 bp):
ATCCTTTTTAAGTCCTTTAGGGGTATTAGGTACTTTCACGTCGAAGGTATCCTAAAGGCATTTTC
ATAATTTTTTAAACTAAATCCTAGGTTGTCACTCGGTTCGCTTTTATGCCGAAGGTGGGTATTTA
GGATAGGTTCATCCCATCTATA
Done.