Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold28
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2815568
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.30
Warning! 166732 characters in sequence are not A, C, G, or T
File 16 of 16
Found at i:2640663 original size:16 final size:16
Alignment explanation
Indices: 2640642--2640673 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
2640632 GAGTGCAATT
*
2640642 ACCTTGTAGTCAAGAA
1 ACCTTGCAGTCAAGAA
2640658 ACCTTGCAGTCAAGAA
1 ACCTTGCAGTCAAGAA
2640674 GTTATGTTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.38, C:0.22, G:0.19, T:0.22
Consensus pattern (16 bp):
ACCTTGCAGTCAAGAA
Found at i:2642783 original size:23 final size:21
Alignment explanation
Indices: 2642757--2642806 Score: 73
Period size: 23 Copynumber: 2.3 Consensus size: 21
2642747 CCTTTGTACT
2642757 AAAAAAAACAACAAAAAACCAA
1 AAAAAAAACAACAAAAAA-CAA
*
2642779 GAAAAAAAATAACAAAAAACAA
1 -AAAAAAAACAACAAAAAACAA
2642801 AAAAAA
1 AAAAAA
2642807 TTGAAAATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 6 0.23
22 3 0.12
23 17 0.65
ACGTcount: A:0.84, C:0.12, G:0.02, T:0.02
Consensus pattern (21 bp):
AAAAAAAACAACAAAAAACAA
Found at i:2642836 original size:23 final size:22
Alignment explanation
Indices: 2642758--2642866 Score: 71
Period size: 23 Copynumber: 4.7 Consensus size: 22
2642748 CTTTGTACTA
*
2642758 AAAAAAACAACAAAAAACCAAGA-
1 AAAAAAACAA-AAAAAA-CAAAAC
* *
2642781 AAAAAAATAACAAAAAACAAAAA
1 AAAAAAACAA-AAAAAACAAAAC
*
2642804 AAATTGAAAATAAAAAAAACAAACAC
1 AAA---AAAACAAAAAAAACAAA-AC
*
2642830 AAAAAAA-AAACCAAAA-AAAAC
1 AAAAAAACAAA-AAAAACAAAAC
*
2642851 AAACAAACAAAAAAAA
1 AAAAAAACAAAAAAAA
2642867 GGTCCAGATG
Statistics
Matches: 73, Mismatches: 6, Indels: 16
0.77 0.06 0.17
Matches are distributed among these distances:
21 12 0.16
22 13 0.18
23 27 0.37
25 10 0.14
26 11 0.15
ACGTcount: A:0.82, C:0.13, G:0.02, T:0.04
Consensus pattern (22 bp):
AAAAAAACAAAAAAAACAAAAC
Found at i:2642855 original size:31 final size:30
Alignment explanation
Indices: 2642769--2642866 Score: 108
Period size: 32 Copynumber: 3.1 Consensus size: 30
2642759 AAAAAACAAC
2642769 AAAAAACCAAGAAAAAAAATAACAAA-AAACAA
1 AAAAAACCAA-AAAAAAAA-AACAAACAAA-AA
**
2642801 AAAAAATTGAAAATAAAAAAAACAAACACAAAA
1 AAAAAA-CCAAAA-AAAAAAAACAAACA-AAAA
*
2642834 AAAAAACCAAAAAAAACAAACAAACAAAAA
1 AAAAAACCAAAAAAAAAAAACAAACAAAAA
2642864 AAA
1 AAA
2642867 GGTCCAGATG
Statistics
Matches: 57, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
30 7 0.12
31 13 0.23
32 18 0.32
33 17 0.30
34 2 0.04
ACGTcount: A:0.82, C:0.12, G:0.02, T:0.04
Consensus pattern (30 bp):
AAAAAACCAAAAAAAAAAAACAAACAAAAA
Found at i:2642862 original size:27 final size:27
Alignment explanation
Indices: 2642815--2642866 Score: 88
Period size: 27 Copynumber: 1.9 Consensus size: 27
2642805 AATTGAAAAT
2642815 AAAAAAAACAAACACAAAAAAAAAACC
1 AAAAAAAACAAACACAAAAAAAAAACC
2642842 AAAAAAAACAAACA-AACAAAAAAAA
1 AAAAAAAACAAACACAA-AAAAAAAA
2642867 GGTCCAGATG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 2 0.08
27 22 0.92
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (27 bp):
AAAAAAAACAAACACAAAAAAAAAACC
Found at i:2647562 original size:43 final size:43
Alignment explanation
Indices: 2647501--2647586 Score: 136
Period size: 43 Copynumber: 2.0 Consensus size: 43
2647491 TATAAAGGTG
*
2647501 AAGGTGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACTTA
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCAACATTGGACTTA
* * *
2647544 AAGGTGCCAATATGCTGATTCATGGCCAGCGATATTGGACTTA
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCAACATTGGACTTA
2647587 GAAGAAGATG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.26
Consensus pattern (43 bp):
AAGGTGCCAATATGCTGATTCAAGGCCAGCAACATTGGACTTA
Found at i:2647650 original size:29 final size:29
Alignment explanation
Indices: 2647602--2647875 Score: 111
Period size: 28 Copynumber: 9.5 Consensus size: 29
2647592 AGATGCCACT
2647602 AACTTGTGTCGGCTTTTGAAAGGGCTGCACC
1 AACTTGTG--GGCTTTTGAAAGGGCTGCACC
* ** * *
2647633 AACTTGTGTGCTTTTG-AAGGTTTCCACT
1 AACTTGTGGGCTTTTGAAAGGGCTGCACC
** *
2647661 GCCTTGTGGGC-TTTGAAAGGGGTGCTACC
1 AACTTGTGGGCTTTTGAAAGGGCTGC-ACC
* * *
2647690 GACTTGTGGGCTTTTG-AA-GGTTGCCACT
1 AACTTGTGGGCTTTTGAAAGGGCTG-CACC
** * * *
2647718 GCCTTGTGGGC-TTTGAAA-AGATGCCACT
1 AACTTGTGGGCTTTTGAAAGGGCTG-CACC
*** *
2647746 AACTTGTGGGCTTTTGAAA-AAATGCCACT
1 AACTTGTGGGCTTTTGAAAGGGCTG-CACC
* * *
2647775 GACTTGTGGGCTTTTG-AA-GGTTGCCACT
1 AACTTGTGGGCTTTTGAAAGGGCTG-CACC
* * * *
2647803 GACTTGTTGGC-TTTAAAAGGGGTGCCACC
1 AACTTGTGGGCTTTTGAAAGGGCTG-CACC
* *
2647832 GACTTGTGGGCTTTTGAAAAGGG-TGCCACT
1 AACTTGTGGGCTTTTG-AAAGGGCTG-CACC
*
2647862 GACTTGTGGGCTTT
1 AACTTGTGGGCTTT
2647876 GGAAGGTGAG
Statistics
Matches: 201, Mismatches: 32, Indels: 21
0.79 0.13 0.08
Matches are distributed among these distances:
27 11 0.05
28 78 0.39
29 71 0.35
30 27 0.13
31 14 0.07
ACGTcount: A:0.19, C:0.19, G:0.30, T:0.32
Consensus pattern (29 bp):
AACTTGTGGGCTTTTGAAAGGGCTGCACC
Found at i:2647667 original size:28 final size:29
Alignment explanation
Indices: 2647595--2647875 Score: 261
Period size: 29 Copynumber: 9.7 Consensus size: 29
2647585 TAGAAGAAGA
* *
2647595 TGCCACTAACTTGTGTCGGCTTTTGAAAGGGC
1 TGCCACTGACTTGTG--GGCTTTTGAAA-GGT
** *
2647627 TG-CACCAACTTGTGTGCTTTTG-AAGGT
1 TGCCACTGACTTGTGGGCTTTTGAAAGGT
* * *
2647654 TTCCACTGCCTTGTGGGC-TTTGAAAGGGG
1 TGCCACTGACTTGTGGGCTTTTGAAA-GGT
* *
2647683 TGCTACCGACTTGTGGGCTTTTG-AAGGT
1 TGCCACTGACTTGTGGGCTTTTGAAAGGT
* * *
2647711 TGCCACTGCCTTGTGGGC-TTTGAAAAGA
1 TGCCACTGACTTGTGGGCTTTTGAAAGGT
* ***
2647739 TGCCACTAACTTGTGGGCTTTTGAAAAAA
1 TGCCACTGACTTGTGGGCTTTTGAAAGGT
2647768 TGCCACTGACTTGTGGGCTTTTG-AAGGT
1 TGCCACTGACTTGTGGGCTTTTGAAAGGT
* * *
2647796 TGCCACTGACTTGTTGGC-TTTAAAAGGGG
1 TGCCACTGACTTGTGGGCTTTTGAAA-GGT
* *
2647825 TGCCACCGACTTGTGGGCTTTTGAAAAGGG
1 TGCCACTGACTTGTGGGCTTTTG-AAAGGT
2647855 TGCCACTGACTTGTGGGCTTT
1 TGCCACTGACTTGTGGGCTTT
2647876 GGAAGGTGAG
Statistics
Matches: 206, Mismatches: 33, Indels: 22
0.79 0.13 0.08
Matches are distributed among these distances:
27 14 0.07
28 72 0.35
29 74 0.36
30 30 0.15
31 14 0.07
32 2 0.01
ACGTcount: A:0.19, C:0.20, G:0.30, T:0.32
Consensus pattern (29 bp):
TGCCACTGACTTGTGGGCTTTTGAAAGGT
Found at i:2647695 original size:57 final size:56
Alignment explanation
Indices: 2647616--2647882 Score: 218
Period size: 57 Copynumber: 4.7 Consensus size: 56
2647606 TGTGTCGGCT
* *
2647616 TTTGAAAGGGCTGCACCAACTTGTGTGCTTTTGAAGGTTTCCACTGCCTTGTGGGC
1 TTTGAAAGGGCTGCACCAACTTGTGGGCTTTTGAAGGTTGCCACTGCCTTGTGGGC
* *
2647672 TTTGAAAGGGGTGCTACCGACTTGTGGGCTTTTGAAGGTTGCCACTGCCTTGTGGGC
1 TTTGAAAGGGCTGC-ACCAACTTGTGGGCTTTTGAAGGTTGCCACTGCCTTGTGGGC
* * * *** *
2647729 TTTGAAA-AGATGCCACTAACTTGTGGGCTTTTGAAAAAATGCCACTGACTTGTGGGC
1 TTTGAAAGGGCTG-CACCAACTTGTGGGCTTTTG-AAGGTTGCCACTGCCTTGTGGGC
* ** * ** * * *
2647786 TTTTG-AA-GGTTGCCACTGACTTGTTGGCTTTAAAAGGGGTGCCACCGACTTGTGGGC
1 -TTTGAAAGGGCTG-CACCAACTTGTGGGCTTTTGAA-GGTTGCCACTGCCTTGTGGGC
** *
2647843 TTTTGAAAAGGG-TGCCACTGACTTGTGGGCTTTGGAAGGT
1 -TTTG-AAAGGGCTG-CACCAACTTGTGGGCTTTTGAAGGT
2647883 GAGGAATGTC
Statistics
Matches: 177, Mismatches: 26, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
56 35 0.20
57 110 0.62
58 6 0.03
59 24 0.14
60 2 0.01
ACGTcount: A:0.19, C:0.18, G:0.31, T:0.32
Consensus pattern (56 bp):
TTTGAAAGGGCTGCACCAACTTGTGGGCTTTTGAAGGTTGCCACTGCCTTGTGGGC
Found at i:2649344 original size:10 final size:10
Alignment explanation
Indices: 2649326--2649362 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
2649316 TTTGTTGTTT
2649326 TTTTCTTTTTG
1 TTTT-TTTTTG
2649337 -TTTTTTTTG
1 TTTTTTTTTG
2649346 TTTTTTTTTG
1 TTTTTTTTTG
2649356 TTTTTTT
1 TTTTTTT
2649363 ATAGAGGATG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
9 6 0.24
10 19 0.76
ACGTcount: A:0.00, C:0.03, G:0.08, T:0.89
Consensus pattern (10 bp):
TTTTTTTTTG
Found at i:2658744 original size:11 final size:11
Alignment explanation
Indices: 2658728--2658755 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
2658718 AAGTAAACAC
2658728 AAAAAACAAAA
1 AAAAAACAAAA
2658739 AAAAAACAAAA
1 AAAAAACAAAA
2658750 AAAAAA
1 AAAAAA
2658756 GTGCAAAGGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.93, C:0.07, G:0.00, T:0.00
Consensus pattern (11 bp):
AAAAAACAAAA
Found at i:2660177 original size:34 final size:35
Alignment explanation
Indices: 2660102--2660927 Score: 985
Period size: 34 Copynumber: 23.8 Consensus size: 35
2660092 TTTTTTCTTC
* *
2660102 AAAGCCCACAACTTCGTGGCAC-C-TTTTC-CTTT
1 AAAGCCCACAACTCCGTGGCACTCTTTTTCTTTTT
*
2660134 AAAGCCCACAACTCCGTGGCAC-CTTCTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACTCTTTTTCTTTTT
* * * *
2660168 AAAGTCCACAACTCCGTGCCACT-TTTTTCATCTT
1 AAAGCCCACAACTCCGTGGCACTCTTTTTCTTTTT
* *
2660202 AAAGCCCACAACTCTGTGGCACACTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACTCTTTTTCTTTTT
*
2660237 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTC
1 AAAGCCCACAACTCCGTGGCACTCTTTTT--CTTTTT
2660274 AAAGCCCACAACTCCGTGGCAC-CTTTTTC-TTTT
1 AAAGCCCACAACTCCGTGGCACTCTTTTTCTTTTT
* * *
2660307 AAAGCCCACAACACTGTGGCACACTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACTCTTTTTCTTTTT
*
2660342 AAAGCCCACAACTCTGTGGCACTCTTTTTCTCTTTT
1 AAAGCCCACAACTCCGTGGCACTCTTTTTCT-TTTT
2660378 CAAAGCCCACAACTCCGTGGCAC-CTTTTTCTTTTT
1 -AAAGCCCACAACTCCGTGGCACTCTTTTTCTTTTT
*
2660413 AAAGCCCACAACTCTGTGGCACTCTTTTTCCTTTTT
1 AAAGCCCACAACTCCGTGGCACTCTTTTT-CTTTTT
2660449 CAAAGCCCACAACTCCGTGGCAC-CTTTTTCTTTTT
1 -AAAGCCCACAACTCCGTGGCACTCTTTTTCTTTTT
** *
2660484 AAAGCCCACAACTTTGTGGCACTCTTTTTCCCTTTTC
1 AAAGCCCACAACTCCGTGGCACTCTTTTT--CTTTTT
2660521 AAAGCCCACAACTCCGTGGCAC-CTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACTCTTTTTCTTTTT
* *
2660555 AAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTC
1 AAAGCCCACAACTCCGTGGCACTCTTTTT--CTTTTT
2660592 AAAGCCCACAACTCCGTGGCAC-CTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACTCTTTTTCTTTTT
2660626 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTT
1 AAAGCCCACAACTCCGTGGCACTCTTTTT--CTTTTT
*
2660663 AAAGCCCACAACTCCGTGGCAC-CTTCTTTGC-CTTT
1 AAAGCCCACAACTCCGTGGCACTCTT-TTT-CTTTTT
* * * * *
2660698 GAAGTCCACGACTACGTGGCACTC-TTTTC-CTTT
1 AAAGCCCACAACTCCGTGGCACTCTTTTTCTTTTT
* * *
2660731 AAAGCCCACAACTACGTGGCACTC-TTTTCCTTCT
1 AAAGCCCACAACTCCGTGGCACTCTTTTTCTTTTT
* * *
2660765 -AAGCCCACAACTCTGTGGCACTCTTTTTCCTTCT
1 AAAGCCCACAACTCCGTGGCACTCTTTTTCTTTTT
* *
2660799 -AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCT
1 AAAGCCCACAACTCCGTGGCACTCTTTTTCTTTTT
* *
2660833 -AAGCCCACAACTCCGTGGCACTTTTTTTTCCCTTTT
1 AAAGCCCACAACTCCGTGGCAC-TCTTTTT-CTTTTT
* *
2660869 AAAGCTCACAACTCCGTGGCAC-CTTGTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACTCTTTTTCTTTTT
* * *
2660903 -AAGTCCATAACTTCGTGGCA-TCTTT
1 AAAGCCCACAACTCCGTGGCACTCTTT
2660928 CACCCTTTCT
Statistics
Matches: 704, Mismatches: 60, Indels: 59
0.86 0.07 0.07
Matches are distributed among these distances:
32 22 0.03
33 98 0.14
34 226 0.32
35 135 0.19
36 52 0.07
37 171 0.24
ACGTcount: A:0.20, C:0.33, G:0.12, T:0.35
Consensus pattern (35 bp):
AAAGCCCACAACTCCGTGGCACTCTTTTTCTTTTT
Found at i:2660406 original size:71 final size:71
Alignment explanation
Indices: 2660099--2660947 Score: 1043
Period size: 71 Copynumber: 12.2 Consensus size: 71
2660089 GCATTTTTTC
* * * *
2660099 TTCAAAGCCCACAACTTCGTGGCACC-TTTTC-CTTTAAAGCCCACAACTCCGTGGCAC-CTTCT
1 TTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCTGTGGCACTCTTTT
2660161 T--CTT
66 TCCCTT
* * * * * * *
2660165 TTTAAAGTCCACAACTCCGTGCCACTTTTTTCATCTTAAAGCCCACAACTCTGTGGCACACTTTT
1 TTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCTGTGGCACTCTTTT
2660230 T--CTT
66 TCCCTT
* * *
2660234 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCAC-CT
1 TTCAAAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTTTAAAGCCCACAACTCTGTGGCACTCT
2660298 TTTT--CTT
63 TTTTCCCTT
* *
2660305 TT-AAAGCCCACAACACTGTGGCACACTTTTTCTTTTTAAAGCCCACAACTCTGTGGCACTCTTT
1 TTCAAAGCCCACAACTCCGTGGCAC-CTTTTTCTTTTTAAAGCCCACAACTCTGTGGCACTCTTT
*
2660369 TTCTCTT
65 TTCCCTT
2660376 TTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCTGTGGCACTCTTTT
1 TTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCTGTGGCACTCTTTT
*
2660441 TCCTTT
66 TCCCTT
*
2660447 TTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTTTGTGGCACTCTTTT
1 TTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCTGTGGCACTCTTTT
2660512 TCCCTT
66 TCCCTT
2660518 TTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCTGTGGCACTCTTTT
1 TTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCTGTGGCACTCTTTT
2660583 TCCCTT
66 TCCCTT
*
2660589 TTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTT
1 TTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCTGTGGCACTCTTTT
2660654 TCCCTT
66 TCCCTT
* * * * *
2660660 TTTAAAGCCCACAACTCCGTGGCACCTTCTTTGC-CTTTGAAGTCCACGACTAC-GTGGCACTC-
1 TTCAAAGCCCACAACTCCGTGGCACCTT-TTT-CTTTTTAAAGCCCACAACT-CTGTGGCACTCT
2660722 TTTT-CC-T
63 TTTTCCCTT
* * *
2660729 TT-AAAGCCCACAACTACGTGGCA-CTCTTTTCCTTCT-AAGCCCACAACTCTGTGGCACTCTTT
1 TTCAAAGCCCACAACTCCGTGGCACCT-TTTTCTTTTTAAAGCCCACAACTCTGTGGCACTCTTT
2660791 TT-CC--
65 TTCCCTT
* * * * *
2660795 TTCTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCT-AAGCCCACAACTCCGTGGCACTTTTT
1 TTCAAAGCCCACAACTCCGTGGCAC-CTTTTTCTTTTTAAAGCCCACAACTCTGTGGCAC-TCTT
2660859 TTTCCCTT
64 TTTCCCTT
* * * *
2660867 TT-AAAGCTCACAACTCCGTGGCACCTTGTTCTTTTT-AAGTCCATAACT-TCGTGGCA-TCTTT
1 TTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCT-GTGGCACTCTTT
**
2660928 CACCC-T
65 TTCCCTT
2660934 TTCTAAAGCCCACA
1 TTC-AAAGCCCACA
2660948 CAAGTCGGTG
Statistics
Matches: 701, Mismatches: 55, Indels: 51
0.87 0.07 0.06
Matches are distributed among these distances:
65 1 0.00
66 43 0.06
67 40 0.06
68 107 0.15
69 57 0.08
70 60 0.09
71 320 0.46
72 71 0.10
73 2 0.00
ACGTcount: A:0.20, C:0.33, G:0.12, T:0.34
Consensus pattern (71 bp):
TTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCTGTGGCACTCTTTT
TCCCTT
Found at i:2660977 original size:33 final size:33
Alignment explanation
Indices: 2660931--2661166 Score: 329
Period size: 33 Copynumber: 7.2 Consensus size: 33
2660921 CATCTTTCAC
2660931 CCTT-TCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
2660963 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
2660996 CCCTTCTCTAAAGCCCACACAAGTCGGTGGC-AA
1 -CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* *
2661029 CCTTCCTCTAAAGCCCACACAAGTTGGTGGCAATC
1 CCTT-CTCTAAAGCCCACACAAGTCGGTGGCAA-A
* *
2661064 CCTTC-CCAAAGCCCACACAAGTCGGTGGCAAC
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* * *
2661096 CCTTC-CCAAAGCCCACACAAGTTGGTGGC-AG
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
*
2661127 CCATTCTCTAAAGCCCACACAAGTCGGTGGCAAC
1 CC-TTCTCTAAAGCCCACACAAGTCGGTGGCAAA
2661161 CCTTCT
1 CCTTCT
2661167 AAGCCCAATA
Statistics
Matches: 187, Mismatches: 9, Indels: 15
0.89 0.04 0.07
Matches are distributed among these distances:
31 3 0.02
32 40 0.21
33 105 0.56
34 35 0.19
35 4 0.02
ACGTcount: A:0.28, C:0.36, G:0.18, T:0.19
Consensus pattern (33 bp):
CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
Found at i:2661018 original size:67 final size:67
Alignment explanation
Indices: 2660929--2661166 Score: 360
Period size: 67 Copynumber: 3.6 Consensus size: 67
2660919 GGCATCTTTC
*
2660929 ACCCTT-TCTAAAGCCCACACAAGTCGGTGGCAAACCTTCTCTAAAGCCCACACAAGTCGGTGGC
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAAACCTTCTCTAAAGCCCACACAAGTTGGTGGC
2660993 AA
66 AA
2660995 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGC-AACCTTCCTCTAAAGCCCACACAAGTTGGTGG
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAAACCTT-CTCTAAAGCCCACACAAGTTGGTGG
2661059 CAA
65 CAA
* * * *
2661062 TCCCTTC-CCAAAGCCCACACAAGTCGGTGGCAACCCTTC-CCAAAGCCCACACAAGTTGGTGGC
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAAACCTTCTCTAAAGCCCACACAAGTTGGTGGC
2661125 -A
66 AA
* * *
2661126 GCCATTCTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCT
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAAACCTTCT
2661167 AAGCCCAATA
Statistics
Matches: 159, Mismatches: 8, Indels: 10
0.90 0.05 0.06
Matches are distributed among these distances:
64 6 0.04
65 54 0.34
66 36 0.23
67 63 0.40
ACGTcount: A:0.28, C:0.36, G:0.18, T:0.18
Consensus pattern (67 bp):
ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAAACCTTCTCTAAAGCCCACACAAGTTGGTGGC
AA
Found at i:2661305 original size:21 final size:21
Alignment explanation
Indices: 2661281--2661348 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
2661271 ATGTAGCTGG
2661281 CCTTGAATCAGCACATTGGCA
1 CCTTGAATCAGCACATTGGCA
* * *
2661302 CCTTTAAGTC--CA-ATATAGCTGG
1 CCTTGAA-TCAGCACAT-TGGC--A
2661324 CCTTGAATCAGCACATTGGCA
1 CCTTGAATCAGCACATTGGCA
2661345 CCTT
1 CCTT
2661349 TAAGTCCAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 14
0.63 0.11 0.26
Matches are distributed among these distances:
19 2 0.06
20 5 0.15
21 12 0.35
22 8 0.24
23 5 0.15
24 2 0.06
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (21 bp):
CCTTGAATCAGCACATTGGCA
Found at i:2661324 original size:24 final size:24
Alignment explanation
Indices: 2661297--2661367 Score: 62
Period size: 21 Copynumber: 3.2 Consensus size: 24
2661287 ATCAGCACAT
2661297 TGGCACCTTTAAGTCCAATATAGC
1 TGGCACCTTTAAGTCCAATATAGC
* ** * *
2661321 TGG--CCTTGAA-T-CAGCACA-T
1 TGGCACCTTTAAGTCCAATATAGC
2661340 TGGCACCTTTAAGTCCAATATAGC
1 TGGCACCTTTAAGTCCAATATAGC
2661364 TGGC
1 TGGC
2661368 CTTGAATCAG
Statistics
Matches: 32, Mismatches: 10, Indels: 10
0.62 0.19 0.19
Matches are distributed among these distances:
19 3 0.09
20 4 0.12
21 7 0.22
22 7 0.22
23 4 0.12
24 7 0.22
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (24 bp):
TGGCACCTTTAAGTCCAATATAGC
Found at i:2661327 original size:22 final size:22
Alignment explanation
Indices: 2661302--2661370 Score: 56
Period size: 22 Copynumber: 3.2 Consensus size: 22
2661292 CACATTGGCA
2661302 CCTTTAAGTCCAATATAGCTGG
1 CCTTTAAGTCCAATATAGCTGG
* * *
2661324 CCTTGAA-TCAGCACAT-TGGC--A
1 CCTTTAAGTC--CA-ATATAGCTGG
2661345 CCTTTAAGTCCAATATAGCTGG
1 CCTTTAAGTCCAATATAGCTGG
2661367 CCTT
1 CCTT
2661371 GAATCAGCAT
Statistics
Matches: 34, Mismatches: 6, Indels: 14
0.63 0.11 0.26
Matches are distributed among these distances:
19 2 0.06
20 5 0.15
21 8 0.24
22 12 0.35
23 5 0.15
24 2 0.06
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.30
Consensus pattern (22 bp):
CCTTTAAGTCCAATATAGCTGG
Found at i:2661536 original size:98 final size:98
Alignment explanation
Indices: 2661166--2662133 Score: 819
Period size: 98 Copynumber: 9.9 Consensus size: 98
2661156 GCAACCCTTC
* * * *
2661166 TAAGCCCAATATAGCTGGCCCTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATATAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
*
2661231 GGCCTTGAATCAGCACATTGGCACC-TCACCTT
66 GGCCTTGAATCAGCACATTGGCACCTTCACCAT
* * *
2661263 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C-----CTTTAAGTCCAATATAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
2661322 GGCCTTGAATCAGCACATTGGCACC-T-----T
66 GGCCTTGAATCAGCACATTGGCACCTTCACCAT
**
2661349 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGTGCCTTTTCCATCTTTAAGTCCAATGTA
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC-TTT--ATCTTTAAGTCCAATGTA
*
2661414 GCTGGCCTTGACTCAGCACATTGGCACCTTCACCAT
63 GCTGGCCTTGAATCAGCACATTGGCACCTTCACCAT
2661450 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
*
2661515 GGCCTTGACTCAGCACATTGGCACCTTCACCAT
66 GGCCTTGAATCAGCACATTGGCACCTTCACCAT
* * * * *
2661548 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGCCCAATATCGTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
* * * * * *
2661613 GGCCGTGAATCAACATATTGGCATCTTTATCACT
66 GGCCTTGAATCAGCACATTGGCACCTTCACCA-T
* * * * * * *
2661647 T--TTCTCACCT-T--CAT---CTTTAAGTC--CA-ATGTAGCTGGCCTTGA-C--TCAG-CACA
1 TAAGTC-CA-ATATAGC-TGGCCTTGAA-TCAGCATAT-TGGC--ACCTTTATCTTTAAGTC-CA
* * * ** * * * *
2661697 TTGGCACCTTCACCATTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCACCTT
58 AT-GTAGC-TGGCC-TT--G---AAT-CAGC--ACATTG-----GCACCTT--CA-C-CA---T
* * *
2661761 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C-----CTTTAAGTCCAATATAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
2661820 GGCCTTGAATCAGCACATTGGCACC-T-----T
66 GGCCTTGAATCAGCACATTGGCACCTTCACCAT
** *
2661847 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGTGTCTTTTCCATCTTTAAGTCCAATGTA
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGG-CACCTTT--ATCTTTAAGTCCAATGTA
*
2661912 GCTGGCCTTGACTCAGCACATTGGCACCTTCACCAT
63 GCTGGCCTTGAATCAGCACATTGGCACCTTCACCAT
2661948 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
*
2662013 GGCCTTGACTCAGCACATTGGCACCTTCACCAT
66 GGCCTTGAATCAGCACATTGGCACCTTCACCAT
* * * * *
2662046 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGCCCAATATCGTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
* * *
2662111 GGCCGTGAATCAACATATTGGCA
66 GGCCTTGAATCAGCACATTGGCA
2662134 TCTTTATCAC
Statistics
Matches: 710, Mismatches: 86, Indels: 149
0.75 0.09 0.16
Matches are distributed among these distances:
86 72 0.10
87 1 0.00
91 46 0.06
92 8 0.01
93 5 0.01
94 9 0.01
95 92 0.13
96 4 0.01
97 38 0.05
98 276 0.39
99 7 0.01
100 10 0.01
101 80 0.11
103 3 0.00
104 4 0.01
106 3 0.00
107 3 0.00
108 5 0.01
110 2 0.00
112 4 0.01
113 4 0.01
114 5 0.01
115 9 0.01
116 4 0.01
117 2 0.00
118 2 0.00
119 5 0.01
120 5 0.01
121 2 0.00
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.30
Consensus pattern (98 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
GGCCTTGAATCAGCACATTGGCACCTTCACCAT
Found at i:2661643 original size:49 final size:49
Alignment explanation
Indices: 2661166--2661635 Score: 579
Period size: 49 Copynumber: 9.8 Consensus size: 49
2661156 GCAACCCTTC
* * *
2661166 TAAGCCCAATATAGCTGGCCCTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
2661215 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACC-TCACCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
2661263 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
2661306 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* **
2661349 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGTGCCTTTTCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACC--TT-CATCTT
* * * *
2661401 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCAT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* *
2661450 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * *
2661499 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCAT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
2661548 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * * * *
2661597 TAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCA
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA
2661636 TCTTTATCAC
Statistics
Matches: 373, Mismatches: 39, Indels: 18
0.87 0.09 0.04
Matches are distributed among these distances:
43 81 0.22
45 1 0.00
48 44 0.12
49 205 0.55
50 3 0.01
52 39 0.10
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (49 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
Found at i:2661724 original size:49 final size:49
Alignment explanation
Indices: 2661652--2662389 Score: 619
Period size: 49 Copynumber: 15.0 Consensus size: 49
2661642 TCACTTTTCT
* *
2661652 CACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGG
1 CACCTTCACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG
*
2661701 CACCTTCACCATTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG
1 CACCTTCACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG
2661750 CACC-TCACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG
1 CACCTTCACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG
*
2661798 ------CACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGG
1 CACCTTCACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG
* *
2661841 ------CACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGG
1 CACCTTCACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG
** * * *
2661884 TGTCTTTTCCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGG
1 -CAC-CTT-CACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG
* * *
2661936 CACCTTCACCATTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGG
1 CACCTTCACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG
* * *
2661985 CACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGG
1 CACCTTCACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG
* * * *
2662034 CACCTTCACCATTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGG
1 CACCTTCACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG
* * * * * * * * *
2662083 CACCTTTATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGG
1 CACCTTCACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG
* * * * * * * * *
2662132 CATCTTTATCACTTT---TCTCACCT-TCATCTTTAAGTCCAATGTAGCTGGC-C-TTGACTCAG
1 CACCTTCA-C-CTTTAAGTC-CA-ATGT-AGC--T--GGCC-TTGAATC-AGCACATTG-----G
*
2662191 CACATTGGCACCTTCACCATTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG
1 CACCTT--CACC-T-----TTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG
*
2662248 CACC-TCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATT-G
1 CACCTTCACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG
* *
2662295 -A----CACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGG
1 CACCTTCACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG
* *
2662339 CACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTG
1 CACC--TT-CACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTG
2662390 ACATCCTTTT
Statistics
Matches: 570, Mismatches: 71, Indels: 93
0.78 0.10 0.13
Matches are distributed among these distances:
43 122 0.21
44 1 0.00
45 1 0.00
46 1 0.00
47 1 0.00
48 80 0.14
49 225 0.39
50 3 0.01
51 5 0.01
52 78 0.14
53 1 0.00
54 9 0.02
55 4 0.01
56 2 0.00
57 4 0.01
59 6 0.01
60 4 0.01
61 6 0.01
62 6 0.01
64 1 0.00
65 2 0.00
66 3 0.01
67 3 0.01
68 2 0.00
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.31
Consensus pattern (49 bp):
CACCTTCACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG
Found at i:2661740 original size:116 final size:116
Alignment explanation
Indices: 2661536--2661751 Score: 288
Period size: 116 Copynumber: 1.9 Consensus size: 116
2661526 AGCACATTGG
* * * *
2661536 CACCTTCACCATTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAG
1 CACCTTCACCATTAAGCCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCACCATTAAG
* * *
2661601 CCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCT
66 CCCAATATAGCTGGCCGTGAATCAACACATTGGCATCTTTATCACTTTTCT
* * * * *
2661652 CACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCATTAAG
1 CACCTTCACCATTAAGCCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCACCATTAAG
* * * *
2661717 TCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
66 CCCAATATAGCTGGCCGTGAATCAACACATTGGCA
2661752 CCTCACCTTT
Statistics
Matches: 84, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
116 84 1.00
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.31
Consensus pattern (116 bp):
CACCTTCACCATTAAGCCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCACCATTAAG
CCCAATATAGCTGGCCGTGAATCAACACATTGGCATCTTTATCACTTTTCT
Found at i:2661803 original size:21 final size:21
Alignment explanation
Indices: 2661779--2661846 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
2661769 ATGTAGCTGG
2661779 CCTTGAATCAGCACATTGGCA
1 CCTTGAATCAGCACATTGGCA
* * *
2661800 CCTTTAAGTC--CA-ATATAGCTGG
1 CCTTGAA-TCAGCACAT-TGGC--A
2661822 CCTTGAATCAGCACATTGGCA
1 CCTTGAATCAGCACATTGGCA
2661843 CCTT
1 CCTT
2661847 TAAGTCCAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 14
0.63 0.11 0.26
Matches are distributed among these distances:
19 2 0.06
20 5 0.15
21 12 0.35
22 8 0.24
23 5 0.15
24 2 0.06
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (21 bp):
CCTTGAATCAGCACATTGGCA
Found at i:2661822 original size:24 final size:24
Alignment explanation
Indices: 2661795--2661865 Score: 62
Period size: 21 Copynumber: 3.2 Consensus size: 24
2661785 ATCAGCACAT
2661795 TGGCACCTTTAAGTCCAATATAGC
1 TGGCACCTTTAAGTCCAATATAGC
* ** * *
2661819 TGG--CCTTGAA-T-CAGCACA-T
1 TGGCACCTTTAAGTCCAATATAGC
2661838 TGGCACCTTTAAGTCCAATATAGC
1 TGGCACCTTTAAGTCCAATATAGC
2661862 TGGC
1 TGGC
2661866 CTTGAATCAG
Statistics
Matches: 32, Mismatches: 10, Indels: 10
0.62 0.19 0.19
Matches are distributed among these distances:
19 3 0.09
20 4 0.12
21 7 0.22
22 7 0.22
23 4 0.12
24 7 0.22
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (24 bp):
TGGCACCTTTAAGTCCAATATAGC
Found at i:2661825 original size:22 final size:22
Alignment explanation
Indices: 2661800--2661868 Score: 56
Period size: 22 Copynumber: 3.2 Consensus size: 22
2661790 CACATTGGCA
2661800 CCTTTAAGTCCAATATAGCTGG
1 CCTTTAAGTCCAATATAGCTGG
* * *
2661822 CCTTGAA-TCAGCACAT-TGGC--A
1 CCTTTAAGTC--CA-ATATAGCTGG
2661843 CCTTTAAGTCCAATATAGCTGG
1 CCTTTAAGTCCAATATAGCTGG
2661865 CCTT
1 CCTT
2661869 GAATCAGCAT
Statistics
Matches: 34, Mismatches: 6, Indels: 14
0.63 0.11 0.26
Matches are distributed among these distances:
19 2 0.06
20 5 0.15
21 8 0.24
22 12 0.35
23 5 0.15
24 2 0.06
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.30
Consensus pattern (22 bp):
CCTTTAAGTCCAATATAGCTGG
Found at i:2662114 original size:498 final size:498
Alignment explanation
Indices: 2661166--2662345 Score: 2252
Period size: 498 Copynumber: 2.4 Consensus size: 498
2661156 GCAACCCTTC
* * * * * * * *
2661166 TAAGCCCAATATAGCTGGCCCTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATATAGCT
1 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGTCCAATGTAGCT
2661231 GGCCTTGAATCAGCACATTGGCACCTCACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACA
66 GGCCTTGAATCAGCACATTGGCACCTCACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACA
2661296 TTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATAT
131 TTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATAT
2661361 AGCTGGCCTTGAATCAGCATATTGGTGCCTTTTCCATCTTTAAGTCCAATGTAGCTGGCCTTGAC
196 AGCTGGCCTTGAATCAGCATATTGGTGCCTTTTCCATCTTTAAGTCCAATGTAGCTGGCCTTGAC
2661426 TCAGCACATTGGCACCTTCACCATTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC
261 TCAGCACATTGGCACCTTCACCATTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC
2661491 TTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGCCCA
326 TTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGCCCA
2661556 ATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGCCCAATATCGTTGGCCGTGA
391 ATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGCCCAATATCGTTGGCCGTGA
2661621 ATCAACATATTGGCATCTTTATCACTTTTCTCACCTTCATCTT
456 ATCAACATATTGGCATCTTTATCACTTTTCTCACCTTCATCTT
2661664 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGTCCAATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGTCCAATGTAGCT
2661729 GGCCTTGAATCAGCACATTGGCACCTCACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACA
66 GGCCTTGAATCAGCACATTGGCACCTCACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACA
2661794 TTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATAT
131 TTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATAT
*
2661859 AGCTGGCCTTGAATCAGCATATTGGTGTCTTTTCCATCTTTAAGTCCAATGTAGCTGGCCTTGAC
196 AGCTGGCCTTGAATCAGCATATTGGTGCCTTTTCCATCTTTAAGTCCAATGTAGCTGGCCTTGAC
2661924 TCAGCACATTGGCACCTTCACCATTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC
261 TCAGCACATTGGCACCTTCACCATTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC
2661989 TTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGCCCA
326 TTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGCCCA
2662054 ATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGCCCAATATCGTTGGCCGTGA
391 ATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGCCCAATATCGTTGGCCGTGA
2662119 ATCAACATATTGGCATCTTTATCACTTTTCTCACCTTCATCTT
456 ATCAACATATTGGCATCTTTATCACTTTTCTCACCTTCATCTT
2662162 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGTCCAATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGTCCAATGTAGCT
*
2662227 GGCCTTGAATCAGCACATTGGCACCTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACA
66 GGCCTTGAATCAGCACATTGGCACCTCACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACA
* *
2662292 TTGACACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTT
131 TTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTT
2662346 TCCATCTTTA
Statistics
Matches: 670, Mismatches: 12, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
498 670 1.00
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.31
Consensus pattern (498 bp):
TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGTCCAATGTAGCT
GGCCTTGAATCAGCACATTGGCACCTCACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACA
TTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATAT
AGCTGGCCTTGAATCAGCATATTGGTGCCTTTTCCATCTTTAAGTCCAATGTAGCTGGCCTTGAC
TCAGCACATTGGCACCTTCACCATTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC
TTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGCCCA
ATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGCCCAATATCGTTGGCCGTGA
ATCAACATATTGGCATCTTTATCACTTTTCTCACCTTCATCTT
Found at i:2662238 original size:116 final size:116
Alignment explanation
Indices: 2662034--2662249 Score: 288
Period size: 116 Copynumber: 1.9 Consensus size: 116
2662024 AGCACATTGG
* * * *
2662034 CACCTTCACCATTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAG
1 CACCTTCACCATTAAGCCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCACCATTAAG
* * *
2662099 CCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCT
66 CCCAATATAGCTGGCCGTGAATCAACACATTGGCATCTTTATCACTTTTCT
* * * * *
2662150 CACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCATTAAG
1 CACCTTCACCATTAAGCCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCACCATTAAG
* * * *
2662215 TCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
66 CCCAATATAGCTGGCCGTGAATCAACACATTGGCA
2662250 CCTCATCTTT
Statistics
Matches: 84, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
116 84 1.00
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.31
Consensus pattern (116 bp):
CACCTTCACCATTAAGCCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCACCATTAAG
CCCAATATAGCTGGCCGTGAATCAACACATTGGCATCTTTATCACTTTTCT
Found at i:2662317 original size:43 final size:43
Alignment explanation
Indices: 2662205--2662398 Score: 199
Period size: 43 Copynumber: 4.2 Consensus size: 43
2662195 TTGGCACCTT
*
2662205 CACCATTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
1 CACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATT-G-A
*
2662250 CCTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGA
1 ---CACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGA
* *
2662296 CACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
1 CACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATT-G-A
* *
2662341 CCTTTTCCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGA
1 -------CACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGA
2662391 CATCCTTT
1 CA-CCTTT
2662399 TTCATCATCT
Statistics
Matches: 126, Mismatches: 10, Indels: 24
0.79 0.06 0.15
Matches are distributed among these distances:
43 40 0.32
44 5 0.04
45 1 0.01
46 1 0.01
47 1 0.01
48 39 0.31
50 1 0.01
51 1 0.01
52 37 0.29
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (43 bp):
CACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGA
Found at i:2662377 original size:52 final size:53
Alignment explanation
Indices: 2662299--2662458 Score: 187
Period size: 52 Copynumber: 3.0 Consensus size: 53
2662289 ACATTGACAC
2662299 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCACAT
* * * *
2662351 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCATCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC-TTTTCA-CAT
* * * * * *
2662407 CTTTAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCAC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTT-TCAC
2662459 TTTTCTCATC
Statistics
Matches: 89, Mismatches: 14, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
52 38 0.43
53 2 0.02
54 9 0.10
55 4 0.04
56 36 0.40
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.35
Consensus pattern (53 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCACAT
Found at i:2662389 original size:95 final size:91
Alignment explanation
Indices: 2662205--2662398 Score: 307
Period size: 91 Copynumber: 2.1 Consensus size: 91
2662195 TTGGCACCTT
* *
2662205 CACCATTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTTTAAGTCCAATG
1 CACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTTTAAGTCCAATG
2662270 TAGCTGGCCTTGAATCAGCACATTGA
66 TAGCTGGCCTTGAATCAGCACATTGA
* *
2662296 CACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTC
1 CACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACC---T-CATCTTTAAGTCC
2662361 AATGTAGCTGGCCTTGAATCAGCACATTGA
62 AATGTAGCTGGCCTTGAATCAGCACATTGA
2662391 CATCCTTT
1 CA-CCTTT
2662399 TTCATCATCT
Statistics
Matches: 94, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
91 44 0.47
94 1 0.01
95 44 0.47
96 5 0.05
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (91 bp):
CACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTTTAAGTCCAATG
TAGCTGGCCTTGAATCAGCACATTGA
Found at i:2662435 original size:56 final size:56
Alignment explanation
Indices: 2662299--2662627 Score: 261
Period size: 67 Copynumber: 5.6 Consensus size: 56
2662289 ACATTGACAC
* *
2662299 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC-TTTTC--CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCATCAT
* *
2662351 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCATCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCATCAT
* * * * * *
2662407 CTTTAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCATC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATT-G-A-C---ATC-C-TTT-T--TCATC
2662472 AT
55 AT
* *
2662474 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCATCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCATCAT
* * * * * *
2662530 CTTTAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCATC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATT-G-A-C---ATC-C-TTT-T--TCATC
2662595 AT
55 AT
*
2662597 CTTTAAGTCCAATATTGCTGGCCTTGAATCA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCA
2662628 ACATATTGGC
Statistics
Matches: 219, Mismatches: 32, Indels: 37
0.76 0.11 0.13
Matches are distributed among these distances:
52 38 0.17
53 2 0.01
54 5 0.02
56 70 0.32
57 2 0.01
58 3 0.01
59 5 0.02
60 1 0.00
61 3 0.01
62 6 0.03
63 2 0.01
64 7 0.03
65 3 0.01
66 1 0.00
67 71 0.32
ACGTcount: A:0.26, C:0.24, G:0.13, T:0.37
Consensus pattern (56 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCATCAT
Found at i:2662567 original size:123 final size:123
Alignment explanation
Indices: 2662348--2662627 Score: 533
Period size: 123 Copynumber: 2.3 Consensus size: 123
2662338 GCACCTTTTC
2662348 CATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCATCATCTTTAA
1 CATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCATCATCTTTAA
2662413 GCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCAT
66 GCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCAT
2662471 CATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCATCATCTTTAA
1 CATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCATCATCTTTAA
2662536 GCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCAT
66 GCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCAT
* * *
2662594 CATCTTTAAGTCCAATATTGCTGGCCTTGAATCA
1 CATCTTTAAGTTCAATGTAGCTGGCCTTGAATCA
2662628 ACATATTGGC
Statistics
Matches: 154, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
123 154 1.00
ACGTcount: A:0.26, C:0.24, G:0.12, T:0.37
Consensus pattern (123 bp):
CATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCATCATCTTTAA
GCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCAT
Found at i:2663425 original size:13 final size:13
Alignment explanation
Indices: 2663407--2663431 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2663397 CATAAAATGT
2663407 TGTATCGATACAA
1 TGTATCGATACAA
2663420 TGTATCGATACA
1 TGTATCGATACA
2663432 TATTTTTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2663429 original size:33 final size:34
Alignment explanation
Indices: 2663387--2663457 Score: 99
Period size: 34 Copynumber: 2.1 Consensus size: 34
2663377 TTCAACGATT
2663387 TGTATCGATACATA-AAATGTTGTATCGATACAA
1 TGTATCGATACATATAAATGTTGTATCGATACAA
*** *
2663420 TGTATCGATACATATTTTTTTTGTATCGATACAA
1 TGTATCGATACATATAAATGTTGTATCGATACAA
2663454 TGTA
1 TGTA
2663458 AGCTACTGCC
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
33 14 0.42
34 19 0.58
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.41
Consensus pattern (34 bp):
TGTATCGATACATATAAATGTTGTATCGATACAA
Found at i:2663515 original size:13 final size:13
Alignment explanation
Indices: 2663497--2663521 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2663487 ATTATTCACA
2663497 TGTATCGATACAT
1 TGTATCGATACAT
2663510 TGTATCGATACA
1 TGTATCGATACA
2663522 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2663586 original size:52 final size:52
Alignment explanation
Indices: 2663530--2663650 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
2663520 CACTGATCTT
*
2663530 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
2663582 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
2663634 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
2663651 TAACTTTTCA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:2673592 original size:13 final size:13
Alignment explanation
Indices: 2673574--2673601 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
2673564 ATACAAAGAT
2673574 CAATGTATCGATA
1 CAATGTATCGATA
2673587 CAATGTATCGATA
1 CAATGTATCGATA
2673600 CA
1 CA
2673602 TTGAATAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:2673700 original size:21 final size:19
Alignment explanation
Indices: 2673651--2673704 Score: 63
Period size: 21 Copynumber: 2.7 Consensus size: 19
2673641 TAACGATACA
2673651 TTGTATCGATACAATACTT
1 TTGTATCGATACAATACTT
* * *
2673670 ATGCATCGATACATTTACTGT
1 TTGTATCGATACA-ATACT-T
2673691 TTGTATCGATACAA
1 TTGTATCGATACAA
2673705 ATTGTTGAAA
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
19 11 0.41
20 4 0.15
21 12 0.44
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.39
Consensus pattern (19 bp):
TTGTATCGATACAATACTT
Found at i:2674753 original size:28 final size:28
Alignment explanation
Indices: 2674718--2675038 Score: 416
Period size: 28 Copynumber: 11.5 Consensus size: 28
2674708 TGTTCATCTC
*
2674718 TTCAAAGCCCACAAGTCAGTGGCATTCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
*
2674746 TTCAAAGCCCACAAGTTAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
*
2674774 TTCAAAGCCCACAAGTCAGTGACATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
*
2674802 TTCAAAGCCCACAAGTCAGTGGCACCCTT
1 TTCAAAGCCCACAAGTCAGTGGCATCC-T
* *
2674831 TTCAAGGCCCACAAGTTAGTGGC-TCCTT
1 TTCAAAGCCCACAAGTCAGTGGCATCC-T
*
2674859 TTCATAGCCCACAAGTCAGTGGCA-CCTT
1 TTCAAAGCCCACAAGTCAGTGGCATCC-T
*
2674887 TTCAAAGCCCACAAGTCAATGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
2674915 TTCAAAGCCCACAAGTCAGTGGCAT-CT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* * *
2674942 CTTCAAAGCCCA-TAGTTAGTGGCAACCT
1 -TTCAAAGCCCACAAGTCAGTGGCATCCT
* * * *
2674970 TCCAAAGCCCACGAGTCAGTGGTAACCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* *
2674998 TCCAAAGCCCACAAGTTAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
*
2675026 TTTAAAGCCCACA
1 TTCAAAGCCCACA
2675039 CAAGTCGGTG
Statistics
Matches: 259, Mismatches: 28, Indels: 12
0.87 0.09 0.04
Matches are distributed among these distances:
27 22 0.08
28 213 0.82
29 24 0.09
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.23
Consensus pattern (28 bp):
TTCAAAGCCCACAAGTCAGTGGCATCCT
Found at i:2674916 original size:113 final size:111
Alignment explanation
Indices: 2674715--2675083 Score: 436
Period size: 113 Copynumber: 3.2 Consensus size: 111
2674705 GAATGTTCAT
* * *
2674715 CTCTTCAAAGCCCACAAGTCAGTGGCATTCTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAA
1 CTCTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCA-CCTTTCAAA
*
2674780 GCCCACAAGTCAGTGACATCCTTTCAAAGCCCACAAGTCAGTGGCACC
65 GCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCA-C
* * *
2674828 CTTTTCAAGGCCCACAAGTTAGTGGC-TCCTTTTCATAGCCCACAAGTCAGTGGCACCTTTTCAA
1 CTCTTCAAAGCCCACAAGTTAGTGGCATCC-TTTCAAAGCCCACAAGTCAGTGGCACC-TTTCAA
* *
2674892 AGCCCACAAGTCAATGGCATCCTTTCAAAGCCCACAAGTCAGTGGCAT
64 AGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCAC
* * * * * *
2674940 CTCTTCAAAGCCCA-TAGTTAGTGGCAACCTTCCAAAGCCCACGAGTCAGTGGTAACCTTCCAAA
1 CTCTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGG-CACCTTTCAAA
* * * *
2675004 GCCCACAAGTTAGTGGCATCCTTTTAAAGCCCACACAAGTCGGTGGCAA
65 GCCCACAAGTCAGTGGCATCCTTTCAAAG-CC-CACAAGTCAGTGGCAC
* *
2675053 CTTTCTCTAAAGCTCACACAAGTTGGTGGCA
1 CTCT-TC-AAAGC-C-CACAAGTTAGTGGCA
2675084 ACCCTTCTAA
Statistics
Matches: 219, Mismatches: 26, Indels: 17
0.84 0.10 0.06
Matches are distributed among these distances:
111 62 0.28
112 23 0.11
113 114 0.52
114 2 0.01
115 5 0.02
116 1 0.00
117 2 0.01
118 10 0.05
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.23
Consensus pattern (111 bp):
CTCTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTCAAAG
CCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCAC
Found at i:2675885 original size:20 final size:20
Alignment explanation
Indices: 2675860--2676123 Score: 124
Period size: 20 Copynumber: 12.4 Consensus size: 20
2675850 ACCTAGATAG
2675860 ATCGATACATTGTTCAATGT
1 ATCGATACATTGTTCAATGT
* ** *
2675880 ATCGATATATTGCCCAGATAT
1 ATCGATACATTGTTCA-ATGT
*
2675901 ATCGATACATCT-TCCAATGT
1 ATCGATACAT-TGTTCAATGT
* *
2675921 ATCGATACA-TGTATGAGTGT
1 ATCGATACATTGT-TCAATGT
*
2675941 ATCGATACATTTTTCAATGT
1 ATCGATACATTGTTCAATGT
*
2675961 ATCGATACGTTCTGTCCTTTTACCCAGATGT
1 ATCGATAC-AT-TG-----TT---CA-ATGT
*
2675992 ATCGATACATTTTTACTAGATGT
1 ATCGATACATTGTT-C-A-ATGT
*
2676015 ATCAATACACTT-TTCAATGT
1 ATCGATACA-TTGTTCAATGT
* ***
2676035 ATCAATACATTACCCAAATGT
1 ATCGATACATTGTTC-AATGT
*
2676056 ATCGATTCATT-TTCCAATGT
1 ATCGATACATTGTT-CAATGT
* *
2676076 ATCGATACA-AGTATGAATGT
1 ATCGATACATTGT-TCAATGT
*
2676096 ATCGATACATTCTTCAATGT
1 ATCGATACATTGTTCAATGT
*
2676116 ATCAATAC
1 ATCGATAC
2676124 GTTCTGTCCT
Statistics
Matches: 188, Mismatches: 32, Indels: 48
0.70 0.12 0.18
Matches are distributed among these distances:
18 1 0.01
19 3 0.02
20 106 0.56
21 36 0.19
22 4 0.02
23 16 0.09
24 4 0.02
27 2 0.01
29 1 0.01
30 3 0.02
31 12 0.06
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.38
Consensus pattern (20 bp):
ATCGATACATTGTTCAATGT
Found at i:2676104 original size:61 final size:64
Alignment explanation
Indices: 2675980--2676106 Score: 152
Period size: 61 Copynumber: 2.0 Consensus size: 64
2675970 TTCTGTCCTT
* * ** *
2675980 TTACCCAGATGTATCGATACATTTTTACTAGATGTATCAATACACTTTTCAATGTATCAATACA
1 TTACCCAAATGTATCGATACATTTTTACCAGATGTATCAATACAAGTATCAATGTATCAATACA
* * * *
2676044 TTACCCAAATGTATCGATTCA-TTTT-CCA-ATGTATCGATACAAGTATGAATGTATCGATACA
1 TTACCCAAATGTATCGATACATTTTTACCAGATGTATCAATACAAGTATCAATGTATCAATACA
2676105 TT
1 TT
2676107 CTTCAATGTA
Statistics
Matches: 54, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
61 29 0.54
62 2 0.04
63 4 0.07
64 19 0.35
ACGTcount: A:0.34, C:0.18, G:0.11, T:0.37
Consensus pattern (64 bp):
TTACCCAAATGTATCGATACATTTTTACCAGATGTATCAATACAAGTATCAATGTATCAATACA
Found at i:2676134 original size:155 final size:155
Alignment explanation
Indices: 2675842--2676176 Score: 482
Period size: 155 Copynumber: 2.2 Consensus size: 155
2675832 TGAAAAAGTC
* * * *
2675842 ACATTTTTACCTAGATAG-ATCGATACATTGTTCAATGTATCGATATATTGCCCAGATATATCGA
1 ACATTTTTA-CTAGAT-GTATCGATACATTGTTCAATGTATCAATACATTACCCAAATATATCGA
* * * *
2675906 TACATCTTCCAATGTATCGATACATGTATGAGTGTATCGATACATTTTTCAATGTATCGATACGT
64 TACATCTTCCAATGTATCGATACAAGTATGAATGTATCGATACATTCTTCAATGTATCAATACGT
* *
2675971 TCTGTCCTTTTACCCAGATGTATCGAT
129 TCTGTCCTTTTACACAGAGGTATCGAT
* *
2675998 ACATTTTTACTAGATGTATCAATACACTT-TTCAATGTATCAATACATTACCCAAATGTATCGAT
1 ACATTTTTACTAGATGTATCGATACA-TTGTTCAATGTATCAATACATTACCCAAATATATCGAT
* *
2676062 TCATTTTCCAATGTATCGATACAAGTATGAATGTATCGATACATTCTTCAATGTATCAATACGTT
65 ACATCTTCCAATGTATCGATACAAGTATGAATGTATCGATACATTCTTCAATGTATCAATACGTT
2676127 CTGTCCTTTTACACAGAGGTATCGAT
130 CTGTCCTTTTACACAGAGGTATCGAT
2676153 ACATTTTT-C-A-ATGTATCGATACAT
1 ACATTTTTACTAGATGTATCGATACAT
2676177 CTAGTTAAAA
Statistics
Matches: 162, Mismatches: 15, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
151 1 0.01
152 12 0.07
153 1 0.01
154 2 0.01
155 135 0.83
156 11 0.07
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.38
Consensus pattern (155 bp):
ACATTTTTACTAGATGTATCGATACATTGTTCAATGTATCAATACATTACCCAAATATATCGATA
CATCTTCCAATGTATCGATACAAGTATGAATGTATCGATACATTCTTCAATGTATCAATACGTTC
TGTCCTTTTACACAGAGGTATCGAT
Found at i:2678992 original size:9 final size:9
Alignment explanation
Indices: 2678978--2679004 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
2678968 TATCAAGTCA
2678978 AAACCAATG
1 AAACCAATG
2678987 AAACCAATG
1 AAACCAATG
2678996 AAACCAATG
1 AAACCAATG
2679005 TCAAGTCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.56, C:0.22, G:0.11, T:0.11
Consensus pattern (9 bp):
AAACCAATG
Found at i:2685032 original size:22 final size:23
Alignment explanation
Indices: 2684967--2685023 Score: 80
Period size: 22 Copynumber: 2.5 Consensus size: 23
2684957 AGCAAGTGAG
* *
2684967 GAAAGAAGAAACAGCAAGC-AAA
1 GAAAGAAAAAACAACAAGCAAAA
2684989 GAAAGAAAAAACAACAAGCAAAA
1 GAAAGAAAAAACAACAAGCAAAA
2685012 GCAAAGAAAAAA
1 G-AAAGAAAAAA
2685024 ACATACAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
22 17 0.55
23 4 0.13
24 10 0.32
ACGTcount: A:0.70, C:0.12, G:0.18, T:0.00
Consensus pattern (23 bp):
GAAAGAAAAAACAACAAGCAAAA
Found at i:2686515 original size:156 final size:155
Alignment explanation
Indices: 2686210--2687426 Score: 1073
Period size: 157 Copynumber: 7.8 Consensus size: 155
2686200 TTTCACATTG
* * *** * * *
2686210 AAGGTATCCCTTAGGGGCATTTCCATAACTTT-TTAGAACCAAGTCTTAGGTTATCACCA-GTCT
1 AAGGTATCCCTCAAGGGCATTTTTGTAA-TTTCTTAGAATCGAGTCCTAGGTTATCACCAGGTCT
* * * **
2686273 ACTTTTATGCCG-AGGTGGGTATTTAGGATAAGTTCACCCCTTTTATAGTATTTTTTAAGTCCTT
65 GCTTTTATGCCGAAGGTGGGTATTTAGGATAGGTTCACCCCTTTTTTAGTCCTTTTTAAGTCCTT
*
2686337 TAAGGGTACCAGGATACTTTCACGTCG
130 TAAGGGTACC-GGATACTTTCACGTCA
*
2686364 AAGGTATCCCTCAAGGGCA-TTTTGTAATTTCTTAGAACCGAGTCCTAGGTTATCACCAGGTCTG
1 AAGGTATCCCTCAAGGGCATTTTTGTAATTTCTTAGAATCGAGTCCTAGGTTATCACCAGGTCTG
* * *
2686428 CGTTTATGCCGAAGGTAGGTATTTAGGATAGGTTCACCCCCTTTTTTTGTCCTTTTTAAGTCCTT
66 CTTTTATGCCGAAGGTGGGTATTTAGGATAGGTTCA-CCCCTTTTTTAGTCCTTTTTAAGTCCTT
*
2686493 TAAGGGTACCGTGATACATTCACGTCA
130 TAAGGGTACCG-GATACTTTCACGTCA
* * * * * * *
2686520 AAGGTATCCC-CTAGAGGCATTTTTATAATTTCCTAAAATCGAGTCCTAAGTTATCACCGGGTCC
1 AAGGTATCCCTCAAG-GGCATTTTTGTAATTTCTTAGAATCGAGTCCTAGGTTATCACCAGGTCT
* * ** * * *
2686584 ACGTTTATGCTAAAGGTGGGTATTTAGGATAAGTTCACCCC-CTTTTAGT-C--TTTAAGCCCTT
65 GCTTTTATGCCGAAGGTGGGTATTTAGGATAGGTTCACCCCTTTTTTAGTCCTTTTTAAGTCCTT
2686645 TAAGGGTACCAGGATACTTTCACGTCA
130 TAAGGGTACC-GGATACTTTCACGTCA
* * * * * * * * *
2686672 AAGGTATCCC-CTAGGGGCATTTTTGTAATTGCCTAAAATCGAGTCTTAGCTTGTCATCTGGT-T
1 AAGGTATCCCTC-AAGGGCATTTTTGTAATTTCTTAGAATCGAGTCCTAGGTTATCACCAGGTCT
* * * *
2686735 CGCTTTTATGCCGAAGGTTGGTGTTTAGGATAGGTTCA-CCCTTTTTATACTCC-TTTTACAGTT
65 -GCTTTTATGCCGAAGGTGGGTATTTAGGATAGGTTCACCCCTTTTT-TAGTCCTTTTTA-AGTC
* * * *
2686798 CTTT-AGGATTACTGGGATACTTTAATGTCA
127 CTTTAAGG-GTAC-CGGATACTTTCACGTCA
* * * * * *
2686828 AAAGAATACCCAT-AAGGCCATTTTCGTAATTTTTTAGAATCGAGTCTTAGGTTATCACCAGGTC
1 AAGGTAT-CCC-TCAAGGGCATTTTTGTAATTTCTTAGAATCGAGTCCTAGGTTATCACCAGGTC
** * * *
2686892 CACTTTTATGCTGAAGGTGGGTATTTAGGATAGGCTT-ACCTCTTTTTTAGTCCTTTTTAAGTCT
64 TGCTTTTATGCCGAAGGTGGGTATTTAGGATAGG-TTCACCCCTTTTTTAGTCCTTTTTAAGTCC
* * *
2686956 TTTAGGGGTACTAGGATACTTTCACGTTA
128 TTTAAGGGTAC-CGGATACTTTCACGTCA
* * * * *
2686985 AAGGTAT-TCTCTACA-GGCAGTTTTTGTAATTTCCTAGAACCGAGTCTTAGGTTATCACTAGGT
1 AAGGTATCCCTC-A-AGGGCA-TTTTTGTAATTTCTTAGAATCGAGTCCTAGGTTATCACCAGGT
* * * * *
2687048 CTGCGTTTATGCCCAAAGTGGGTATTTAGGATAGGTTCACCCCCTTTTTAGTCTTTTTTAAGTCC
63 CTGCTTTTATGCCGAAGGTGGGTATTTAGGATAGGTTCACCCCTTTTTTAGTCCTTTTTAAGTCC
* * * * *
2687113 TTTAGGGGTACCAAGATACCGTTGACATCA
128 TTTAAGGGTACC-GGATA-CTTTCACGTCA
* * * * * *
2687143 AAGGTATCCC-CTAGAGGCATTTTTGTAATTTCTTAG-ATTGAGTACTAGGTTGTCATCGGGTCT
1 AAGGTATCCCTCAAG-GGCATTTTTGTAATTTCTTAGAATCGAGTCCTAGGTTATCACCAGGTCT
* * ** * *
2687206 GCTTTTATGCCGAAAGTGGATATTTAGGATATATTCA-CCCTTTTTATAGT-CGTTTCAAGT-CT
65 GCTTTTATGCCGAAGGTGGGTATTTAGGATAGGTTCACCCCTTTTT-TAGTCCTTTTTAAGTCCT
* *
2687268 TTTAGGGTTACCAGAATACTTTCACGTCA
129 TTAAGGG-TACC-GGATACTTTCACGTCA
* ** * *
2687297 AAGGTATACCCAT-AAGGGTATTTTCATAATTT-TTCGTAATCGAGTCCTAGGTTATCACCGGGT
1 AAGGTAT-CCC-TCAAGGGCATTTTTGTAATTTCTTAG-AATCGAGTCCTAGGTTATCACCAGGT
* * * *
2687360 CCGCTTTTATGTCC-AAGGTGGGTATTTAGGATAGGTTCACCCCTTTTATAATCCTTTTGAAGTC
63 CTGCTTTTATG-CCGAAGGTGGGTATTTAGGATAGGTTCACCCCTTTTTTAGTCCTTTTTAAGTC
2687424 CTT
127 CTT
2687427 GAGGTGTATC
Statistics
Matches: 859, Mismatches: 158, Indels: 88
0.78 0.14 0.08
Matches are distributed among these distances:
151 3 0.00
152 120 0.14
153 35 0.04
154 59 0.07
155 78 0.09
156 212 0.25
157 313 0.36
158 38 0.04
159 1 0.00
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.37
Consensus pattern (155 bp):
AAGGTATCCCTCAAGGGCATTTTTGTAATTTCTTAGAATCGAGTCCTAGGTTATCACCAGGTCTG
CTTTTATGCCGAAGGTGGGTATTTAGGATAGGTTCACCCCTTTTTTAGTCCTTTTTAAGTCCTTT
AAGGGTACCGGATACTTTCACGTCA
Found at i:2687071 original size:466 final size:466
Alignment explanation
Indices: 2686269--2687426 Score: 1290
Period size: 466 Copynumber: 2.5 Consensus size: 466
2686259 GTTATCACCA
* * * * * ** *
2686269 GTCTACTTTTATGCCG-AGGTGGGTATTTAGGATA-AGTTCACCCCTTTTATAGTATTTTTTAAG
1 GTCTGCTTTTATGCCGAAAGTGGATATTTAGGATAGA-TTCACCCTTTTTATACT-CCTTTCAAG
* * * * * * *
2686332 TCCTTTAAGG-GTACCAGGATACTTTCACGTCGAAGGTAT-CCC-TCAAGGGCATTTT-GTAATT
64 T-CTTTTAGGATTACCAGAATACTTTAACGTCAAAAGAATACCCAT-AAGGGCATTTTCGTAATT
* * * * * *
2686393 TCTTAGAACCGAGTCCTAGGTTATCACCAGGTCTGCGTTTATGCCGAAGGTAGGTATTTAGGATA
127 TTTTAGAATCGAGTCCTAGGTTATCACCAGGTCCGCTTTTATGCTGAAGGTGGGTATTTAGGATA
* *
2686458 GGTTCACCCCCTTTTTTTGTCCTTTTTAAGTCCTTTAAGGGTACCGTGATACATTCACGTCAAAG
192 GGTTCA-CCCCTTTTTTAGTCCTTTTTAAGTCCTTTAAGGGTACAGTGATACATTCACGTCAAAG
* * *
2686523 GTATCCCCTAGAGGCATTTTTATAATTTCCTAAAATCGAGTCCTAAGTTATCACCGGGTCCACGT
256 GTATCCCCTACAGGCATTTTTATAATTTCCTAAAACCGAGTCCTAAGTTATCACCAGGTCCACGT
*
2686588 TTATGCTAAAGGTGGGTATTTAGGATAAGTTCACCCCC-TTTTAGTC-TTTAAGCCCTTTAAGGG
321 TTATGCCAAAGGTGGGTATTTAGGATAAGTTCACCCCCTTTTTAGTCTTTTAAGCCCTTTAAGGG
* * * *
2686651 TACCAGGATA-CTTTCACGTCAAAGGTATCCCCTAGGGGCATTTTTGTAATTGCCTAAAATCGAG
386 TACCAAGATACCGTTCACATCAAAGGTATCCCCTAGAGGCATTTTTGTAATT-CCTAAAATCGAG
*
2686715 T-CTTAGCTTGTCATCTG
450 TAC-TAGCTTGTCATCGG
* * * *
2686732 GT-TCGCTTTTATGCCGAAGGTTGG-TGTTTAGGATAGGTTCACCCTTTTTATACTCCTTTTACA
1 GTCT-GCTTTTATGCCGAAAG-TGGATATTTAGGATAGATTCACCCTTTTTATACTCCTTTCA-A
** * * *
2686795 GT-TCTTTAGGATTACTGGGATACTTTAATGTCAAAAGAATACCCATAAGGCCATTTTCGTAATT
63 GTCT-TTTAGGATTACCAGAATACTTTAACGTCAAAAGAATACCCATAAGGGCATTTTCGTAATT
* *
2686859 TTTTAGAATCGAGTCTTAGGTTATCACCAGGTCCACTTTTATGCTGAAGGTGGGTATTTAGGATA
127 TTTTAGAATCGAGTCCTAGGTTATCACCAGGTCCGCTTTTATGCTGAAGGTGGGTATTTAGGATA
* * * * *
2686924 GGCTT-ACCTCTTTTTTAGTCCTTTTTAAGTCTTTTAGGGGTACTAG-GATACTTTCACGTTAAA
192 GG-TTCACCCCTTTTTTAGTCCTTTTTAAGTCCTTTAAGGGTAC-AGTGATACATTCACGTCAAA
* * * * * * * **
2686987 GGTATTCTCTACAGGCAGTTTTTGTAATTTCCTAGAACCGAGTCTTAGGTTATCACTAGGTCTGC
255 GGTATCCCCTACAGGCA-TTTTTATAATTTCCTAAAACCGAGTCCTAAGTTATCACCAGGTCCAC
* *
2687052 GTTTATGCCCAAA-GTGGGTATTTAGGATAGGTTCACCCCCTTTTTAGTCTTTTTTAAGTCCTTT
319 GTTTATG-CCAAAGGTGGGTATTTAGGATAAGTTCACCCCCTTTTTAGTC--TTTTAAGCCCTTT
* * * * *
2687116 AGGGGTACCAAGATACCGTTGACATCAAAGGTATCCCCTAGAGGCATTTTTGTAATTTCTTAGAT
381 AAGGGTACCAAGATACCGTTCACATCAAAGGTATCCCCTAGAGGCATTTTTGTAATTCCTAAAAT
* *
2687181 TGAGTACTAGGTTGTCATCGG
446 CGAGTACTAGCTTGTCATCGG
* * *
2687202 GTCTGCTTTTATGCCGAAAGTGGATATTTAGGATATATTCACCCTTTTTATAGTCGTTTCAAGTC
1 GTCTGCTTTTATGCCGAAAGTGGATATTTAGGATAGATTCACCCTTTTTATACTCCTTTCAAGTC
* * * * * *
2687267 TTTTAGGGTTACCAGAATACTTTCACGTCAAAGGTATACCCATAAGGGTATTTTCATAA-TTTTT
66 TTTTAGGATTACCAGAATACTTTAACGTCAAAAGAATACCCATAAGGGCATTTTCGTAATTTTTT
* * *
2687331 CGTAATCGAGTCCTAGGTTATCACCGGGTCCGCTTTTATG-TCCAAGGTGGGTATTTAGGATAGG
131 AG-AATCGAGTCCTAGGTTATCACCAGGTCCGCTTTTATGCT-GAAGGTGGGTATTTAGGATAGG
* * *
2687395 TTCACCCCTTTTATAATCCTTTTGAAGTCCTT
194 TTCACCCCTTTTTTAGTCCTTTTTAAGTCCTT
2687427 GAGGTGTATC
Statistics
Matches: 582, Mismatches: 87, Indels: 46
0.81 0.12 0.06
Matches are distributed among these distances:
462 2 0.00
463 23 0.04
464 52 0.09
465 78 0.13
466 139 0.24
467 14 0.02
468 9 0.02
469 132 0.23
470 94 0.16
471 39 0.07
ACGTcount: A:0.23, C:0.19, G:0.20, T:0.37
Consensus pattern (466 bp):
GTCTGCTTTTATGCCGAAAGTGGATATTTAGGATAGATTCACCCTTTTTATACTCCTTTCAAGTC
TTTTAGGATTACCAGAATACTTTAACGTCAAAAGAATACCCATAAGGGCATTTTCGTAATTTTTT
AGAATCGAGTCCTAGGTTATCACCAGGTCCGCTTTTATGCTGAAGGTGGGTATTTAGGATAGGTT
CACCCCTTTTTTAGTCCTTTTTAAGTCCTTTAAGGGTACAGTGATACATTCACGTCAAAGGTATC
CCCTACAGGCATTTTTATAATTTCCTAAAACCGAGTCCTAAGTTATCACCAGGTCCACGTTTATG
CCAAAGGTGGGTATTTAGGATAAGTTCACCCCCTTTTTAGTCTTTTAAGCCCTTTAAGGGTACCA
AGATACCGTTCACATCAAAGGTATCCCCTAGAGGCATTTTTGTAATTCCTAAAATCGAGTACTAG
CTTGTCATCGG
Found at i:2687350 original size:312 final size:305
Alignment explanation
Indices: 2686251--2687426 Score: 1138
Period size: 312 Copynumber: 3.8 Consensus size: 305
2686241 TTTAGAACCA
* * *
2686251 AGTCTTAGGTTATCACC-AGTCTACTTTTATGCCG-AGGTGGGTATTTAGGATAAGTTCACCCCT
1 AGTC-TAGGTTATCACCGGGTCCACTTTTATGCCGAAAGTGGGTATTTAGGATAAGTTCACCCCT
* *
2686314 TTTATAGTATTTTTTAAGTCCTTTAAGGGTACCAGGATACTTTCACGTCGAAGGTATCCCTCAAG
65 TTT-TAGTACTTTTTAAGT-CTTTAAGGGTACCAGGATACTTTCACGTCAAAGGTATCCCT-AAG
*
2686379 GGCATTTTGTAATTTCTTAGAACCGAGTCCTAGGTTATCACCAGGTCTGCGTTTATGCCGAAGGT
127 GGCATTTTGTAATTTCTTAGAACCGAGTCCTAGGTTATCACCAGGTCTGCGTTTATGCCCAAGGT
* * * *
2686444 AGGTATTTAGGATAGGTTCACCCCCTTTTTTTGTCCTTTTTAAGTCCTTTAAGGGTACCGTGATA
192 GGGTATTTAGGATAGGTTCA-CCCC-TTTTTAGTCCTTTTTAAGTCCTTTAGGGGTACCGAGATA
* * * *
2686509 CATTCACGTCAAAGGTATCCCCTAGAGGCATTTTTATAATTTCCTAAAATCG
255 CATTAACGTCAAAGGTATCCCCTAGAGGCATTTTTGTAATTT-CTTAGATCG
* * *
2686561 AGTCCTAAGTTATCACCGGGTCCACGTTTATG-CTAAAGGTGGGTATTTAGGATAAGTTCACCCC
1 AGT-CTAGGTTATCACCGGGTCCACTTTTATGCCGAAA-GTGGGTATTTAGGATAAGTTCACCCC
* * *
2686625 CTTTTAGT-C--TTTAAGCCCTTTAAGGGTACCAGGATACTTTCACGTCAAAGGTATCCCCTAGG
64 TTTTTAGTACTTTTTAAG-TCTTTAAGGGTACCAGGATACTTTCACGTCAAAGGTAT-CCCTAAG
* * * * * * * * * * *
2686687 GGCATTTTTGTAATTGCCTAAAATCGAGTCTTAGCTTGTCATCTGGT-TCGCTTTTATGCCGAAG
127 GGCA-TTTTGTAATTTCTTAGAACCGAGTCCTAGGTTATCACCAGGTCT-GCGTTTATGCCCAAG
* * * * * ** * *
2686751 GTTGGTGTTTAGGATAGGTTCACCCTTTTTATACTCC-TTTTACAGTTCTTTAGGATTACTGGGA
190 GTGGGTATTTAGGATAGGTTCACCCCTTTT-TAGTCCTTTTTA-AGTCCTTTAGGGGTACCGAGA
* * * * * * *
2686815 TACTTTAATGTCAAAAGAATACCCATA-AGGCCATTTTCGTAATTTTTTAGAATCG
253 TACATTAACGTCAAAGGTAT-CCCCTAGAGG-CATTTTTGTAATTTCTTAG-ATCG
* * * *
2686870 AGTCTTAGGTTATCACCAGGTCCACTTTTATGCTGAAGGTGGGTATTTAGGATAGGCTT-ACCTC
1 AGTC-TAGGTTATCACCGGGTCCACTTTTATGCCGAAAGTGGGTATTTAGGATAAG-TTCACC-C
* * * * * *
2686934 TTTTTTAGTCCTTTTTAAGTCTTTTAGGGGTACTAGGATACTTTCACGTTAAAGGTATTCTCTAC
63 CTTTTTAGTACTTTTTAAGTC-TTTAAGGGTACCAGGATACTTTCACGTCAAAGGTA-TCCCTA-
* * *
2686999 A-GGCAGTTTTTGTAATTTCCTAGAACCGAGTCTTAGGTTATCACTAGGTCTGCGTTTATGCCCA
125 AGGGCA--TTTTGTAATTTCTTAGAACCGAGTCCTAGGTTATCACCAGGTCTGCGTTTATGCCCA
* * *
2687063 AAGTGGGTATTTAGGATAGGTTCACCCCCTTTTTAGTCTTTTTTAAGTCCTTTAGGGGTACCAAG
188 AGGTGGGTATTTAGGATAGGTTCA-CCCCTTTTTAGTCCTTTTTAAGTCCTTTAGGGGTACCGAG
* * * *
2687128 ATACCGTTGACATCAAAGGTATCCCCTAGAGGCATTTTTGTAATTTCTTAGATTG
252 ATA-CATTAACGTCAAAGGTATCCCCTAGAGGCATTTTTGTAATTTCTTAGATCG
* * ** * *
2687183 AGTACTAGGTTGTCATCGGGTCTGCTTTTATGCCGAAAGTGGATATTTAGGATATA-TTCACCCT
1 AGT-CTAGGTTATCACCGGGTCCACTTTTATGCCGAAAGTGGGTATTTAGGATA-AGTTCACCCC
* * * *
2687247 TTTTATAGT-CGTTTCAAGTCTTTTAGGGTTACCAGAATACTTTCACGTCAAAGGTATACCCATA
64 TTTT-TAGTACTTTTTAAGTCTTTAAGGG-TACCAGGATACTTTCACGTCAAAGGTAT-CCC-TA
* * * * * * * *
2687311 AGGGTATTTTCATAATTT-TTCGTAATCGAGTCCTAGGTTATCACCGGGTCCGCTTTTATGTCCA
125 AGGGCATTTT-GTAATTTCTTAG-AACCGAGTCCTAGGTTATCACCAGGTCTGCGTTTATGCCCA
* *
2687375 AGGTGGGTATTTAGGATAGGTTCACCCCTTTTATAATCCTTTTGAAGTCCTT
188 AGGTGGGTATTTAGGATAGGTTCACCCCTTTT-TAGTCCTTTTTAAGTCCTT
2687427 GAGGTGTATC
Statistics
Matches: 704, Mismatches: 122, Indels: 78
0.78 0.13 0.09
Matches are distributed among these distances:
307 9 0.01
308 92 0.13
309 139 0.20
310 27 0.04
311 39 0.06
312 153 0.22
313 105 0.15
314 112 0.16
315 28 0.04
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.37
Consensus pattern (305 bp):
AGTCTAGGTTATCACCGGGTCCACTTTTATGCCGAAAGTGGGTATTTAGGATAAGTTCACCCCTT
TTTAGTACTTTTTAAGTCTTTAAGGGTACCAGGATACTTTCACGTCAAAGGTATCCCTAAGGGCA
TTTTGTAATTTCTTAGAACCGAGTCCTAGGTTATCACCAGGTCTGCGTTTATGCCCAAGGTGGGT
ATTTAGGATAGGTTCACCCCTTTTTAGTCCTTTTTAAGTCCTTTAGGGGTACCGAGATACATTAA
CGTCAAAGGTATCCCCTAGAGGCATTTTTGTAATTTCTTAGATCG
Found at i:2692302 original size:158 final size:155
Alignment explanation
Indices: 2691665--2692302 Score: 359
Period size: 158 Copynumber: 4.0 Consensus size: 155
2691655 TTGAGGCACG
* * *
2691665 AACTTAGACTTTACAAAAATTGGTGGCAAGAAAACCGTTCTTGCGAAACCAAAGCATCAATAACG
1 AACTTAGACTTTACAAAAATTGGTGGCAAGAAAACCTTTCTTACGAAACCAAAGCATCAATATCG
* *
2691730 TGTATCCATAAGAGAAGACAAAGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGCATGAT
66 TGTATCC-T-AGAGAAGACAAAGTTTATGGTGCTTAATCTTGAAAAGAATGGAGATTAGCATGA-
2691795 AATTCATGTTTGTCTTATTTAAGAGACA
128 AATTCATGTTTGTCTTATTTAAGAGACA
* * ** * * * * * * **
2691823 AACTT-TACTTCTATAAAAAACGGTGGAAAGAAAACATTTTCTTGCGACACCAAGGCATTAATGC
1 AACTTAGACTT-TACAAAAATTGGTGGCAAGAAAAC-CTTTCTTACGAAACCAAAGCATCAATAT
* ** * * * ** * *
2691887 CATGTATCCTA-ATGAAGGGAATGTGTT-T-TTGCTTCCCAAACTCAAAAAGAGTGGAGACTT-T
64 CGTGTATCCTAGA-GAAGACAAAGT-TTATGGTGCTT---AATCTTGAAAAGAATGGAGA-TTAG
* * * * * * **
2691948 TATGAGAATTGATGCTTGTCATATTTATGGGATT
123 CATGA-AATTCATGTTTGTCTTATTTAAGAGACA
* * * ** * * ** *
2691982 AATTTTGA-TATTA-ATTAAAA-TAG-GGCAAAGAAAAGATTTC-CATGGAAAAAAAATCATCAA
1 AACTTAGACT-TTACA--AAAATTGGTGGC-AAGAAAACCTTTCTTA-CGAAACCAAAGCATCAA
* * ** * * ** * *
2692042 TATCGTTTATCCTAACGAGGAGA-ATGTGTTTATAGTGCGTAATC-ACAAAATGAATGAAGATGA
61 TATCGTGTATCCT-A-GAGAAGACA-AAGTTTATGGTGCTTAATCTTGAAAA-GAATGGAGATTA
* * * * * * *
2692105 ACACT-AAAGTCCTCATTTGTCTCAGTTAAG-GCACG
122 GCA-TGAAATTCAT-GTTTGTCTTATTTAAGAG-ACA
*
2692140 AACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCG
1 AACTTAGACTTTACAAAAATTGGTGGCAAGAAAACCTTTCTTACGAAACCAAAGCATCAATATCG
*
2692205 TGTATCCATAGGAGAAGACAAAGTTTATGGTGCTTAATCTTGAAAAGAATGGGGATTAGCATGAC
66 TGTATCC-TA-GAGAAGACAAAGTTTATGGTGCTTAATCTTGAAAAGAATGGAGATTAGCATGA-
2692270 AATTCATGTTTGTCTTATTTAAGAGACA
128 AATTCATGTTTGTCTTATTTAAGAGACA
2692298 AACTT
1 AACTT
2692303 TTCTTTTATC
Statistics
Matches: 337, Mismatches: 107, Indels: 72
0.65 0.21 0.14
Matches are distributed among these distances:
156 5 0.01
157 29 0.09
158 176 0.52
159 107 0.32
160 15 0.04
161 5 0.01
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.29
Consensus pattern (155 bp):
AACTTAGACTTTACAAAAATTGGTGGCAAGAAAACCTTTCTTACGAAACCAAAGCATCAATATCG
TGTATCCTAGAGAAGACAAAGTTTATGGTGCTTAATCTTGAAAAGAATGGAGATTAGCATGAAAT
TCATGTTTGTCTTATTTAAGAGACA
Found at i:2693141 original size:476 final size:474
Alignment explanation
Indices: 2690964--2694688 Score: 4937
Period size: 476 Copynumber: 7.9 Consensus size: 474
2690954 AAAAACATTC
* *
2690964 TTTTGCTTCCCAATCTTC-AAAAGAGTGGAGACTTTTATGTGAATTGATGCTTGTCATATTTAAG
1 TTTTGCTTCCCAATC-TCGAAAAGAATGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAG
* * * * * *
2691028 AGATGAGTTTTGATATTAAGTAAAATAGGGCAAAGAAAAGA-TTTCCT-TAGAAAAAAATCATGA
65 GGATGAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCA-AAAAAAATCATCA
* * * * *
2691091 ATATCGTTTATCTTACA-GAGGAGAATGTGTTTATGGTGCTTAATCACAAAATGAATGAAGATTA
129 ATATAGTTTATCCTA-ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* *
2691155 TTACTAGAATCCTCGTTTGTCTTA-TTAAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAG
193 TTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAG
* * * *
2691219 AAAGACTTTCTAACAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTAATGG
258 AAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGG
*
2691284 TGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCATGCTTGTCTTATTTAAGAGACAAA
323 TGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAA
* *
2691349 CTTTACTTCTATCAAAAACGGTGGAAAGACAACATTTTCTTGCGACACCAAAGCATCGATGTCAT
388 CTTTACTTCTATCAAAAACGGTGGAAAGAAAACATTTTCTTGCGACACCAAAGCATCAATGTCAT
2691414 GTATCCTAATGAAGGGAATGTG
453 GTATCCTAATGAAGGGAATGTG
* * * * *
2691436 TTTTAGC-TCCTAATCTCGAAAAGAATGGAGACTCTTATGAGAATCGATGCATGTCATAATTAAG
1 TTTT-GCTTCCCAATCTCGAAAAGAATGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAG
* * * * * * ** *
2691500 GAATGAATATTCATATTAAGGAAAATCGGGCAACTGAAATGATTTTCATGCAAAAGAAAATTGTG
65 GGATGAATTTTGATATTAAGGAAAATAGGGCAA-AGAAAAGATTTTCATGCAAAA-AAAATCATC
* * *
2691565 AATGTCGTTTGTCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
128 AATATAGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* * * **
2691630 TTACAAAAAACCTCGTTTGTCTTGTTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAG
193 TTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAG
* * * * * *
2691695 AAAACCGTTCTTGCGAAACCAAAGCATCAATAACGTGTATCCATAAGAGAAGACAAAGTTTATGG
258 AAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGG
* *
2691760 TGCCTAATCTTGAAAAGAATGGGGATTAGCATGATAATTCATGTTTGTCTTATTTAAGAGACAAA
323 TGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAA
* * * *
2691825 CTTTACTTCTATAAAAAACGGTGGAAAGAAAACATTTTCTTGCGACACCAAGGCATTAATGCCAT
388 CTTTACTTCTATCAAAAACGGTGGAAAGAAAACATTTTCTTGCGACACCAAAGCATCAATGTCAT
2691890 GTATCCTAATGAAGGGAATGTG
453 GTATCCTAATGAAGGGAATGTG
* * * *
2691912 TTTTTGCTTCCCAAACTCAAAAAGAGTGGAGACTTTTATGAGAATTGATGCTTGTCATATTTATG
1 -TTTTGCTTCCCAATCTCGAAAAGAATGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAG
* ** * *
2691977 GGATTAATTTTGATATTAATTAAAATAGGGCAAAGAAAAGATTTCCATGGAAAAAAAATCATCAA
65 GGATGAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAAAAATCATCAA
* * * * **
2692042 TATCGTTTATCCTAACGAGGAGAATGTGTTTATAGTGCGTAATCACAAAATGAATGAAGATGAAC
130 TATAGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATT
* * *
2692107 ACTA-AAGTCCTCATTTGTCTCAGTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGA
195 ACTAGAA-TCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGA
* *
2692171 AAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCATAGGAGAAGACAAAGTTTATGGT
259 AAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGT
* *
2692236 GCTTAATCTTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAAC
324 GCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAAC
* * * * *
2692301 TTTTCTTTTATCAAAAATGGT-GAAA-AAAACATTTTTTTGCGACACCAAAGCATCAATGTCAGG
389 TTTACTTCTATCAAAAACGGTGGAAAGAAAACATTTTCTTGCGACACCAAAGCATCAATGTCATG
*
2692364 TATCCTAATGAAGGGAATGTCC
454 TATCCTAATGAAGGGAATGT-G
* *
2692386 TTTTGCTTTCCAATCTCGAAAA-AATAGAGACTTTTATGAGAATTGATGAC-TGTCATATTTAAG
1 TTTTGCTTCCCAATCTCGAAAAGAATGGAGACTTTTATGAGAATTGATG-CTTGTCATATTTAAG
* * * * *
2692449 GGATGAATTTTGATATTAAGTAAAACAAGGCAAAGAAAAGATTTCCATG-GAAAAAAATCATCAA
65 GGATGAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAAAAATCATCAA
* * * * * * *
2692513 TATCA-TTTATCCTAACGAGGAGAATGCGTTTATAGTTCGTAATCACAAAATGATTGATGATCAG
130 TAT-AGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAT
* * * *
2692577 TACTAGAGTCCTCATTTGTCTCAATTGAGGCACGAACTTAGACTTTA-ACAAAATCGGTGGCAAG
194 TACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA-AAAATTGGTGGCAAG
* * * *
2692641 AAAGCCTTTCTTACGAATCCAAAGCATTAATATCTTGTATCCTTATGAGAAGACAATGTTTATGG
258 AAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGG
* * * *
2692706 TGTCTAATCATGAAGAGAATAGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGATAAA
323 TGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAA
* * *
2692771 CTTTACTTCTATCAAAAACGGTGGAAGGAAAACATTTTCTTACGACACCAAAACATCAATGTCAT
388 CTTTACTTCTATCAAAAACGGTGGAAAGAAAACATTTTCTTGCGACACCAAAGCATCAATGTCAT
2692836 GTATCCTAATGAAGGGAATGTG
453 GTATCCTAATGAAGGGAATGTG
* * * * *
2692858 TTCTTAG-TTCCCAATCTCAAAAAGAATGGGGACTCTTATGAGAATCT-ATACTTGTCATAATTA
1 TT-TT-GCTTCCCAATCTCGAAAAGAATGGAGACTTTTATGAGAAT-TGATGCTTGTCATATTTA
* * *
2692921 AGGGATGAATGTTGATATTAAGGAAAATAGGGCAAAGAAAGGATTTTCATGCAAAAGAAAATTAT
63 AGGGATGAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAA-AAAATCAT
* * * *
2692986 AAATGTAGTTTATCCTAATGAGGAGAATGTGTTTAAAGTGCCTAATGACAAAATGAATGAAGATC
127 CAATATAGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATC
* *
2693051 ATTACTAGAATCCTCGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAAGTT-TTGGCA
192 ATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA-TTGGTGGCA
** * * * * *
2693115 AGAAAGCCTTTCTTGTGAAACCAAAGCATCAGTAACGTTTATCCTGATGAGAAGGCAAAGTTTAT
256 AGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTAT
* * *
2693180 GGTGCCTAATCTTGAAAATAATGGGGATTAGCATGACAATTCATGTTTTTCTTATTTAAGAGACA
321 GGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACA
* * * *
2693245 AACTTTACTTCTATCAGAAATGGTGGAAAGAAAATATTTTTTTGCGACACCAAAGCATCAATGTC
386 AACTTTACTTCTATCAAAAACGGTGGAAAGAAAACATTTTCTTGCGACACCAAAGCATCAATGTC
* *
2693310 ATGTATTCTAATGAAGGGAATGTCC
451 ATGTATCCTAATGAAGGGAATGT-G
* * * *
2693335 TTTTGCTTCCCAATCTCGAGAAGAGTGGAGACTTTTATGAGAATTAATGCCTGTCATATTTAAGG
1 TTTTGCTTCCCAATCTCGAAAAGAATGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGG
* ** * *
2693400 GATGAATTTTGATATTAAGTAAAGCAAGGCAAAGAAAAGATTTCCATTG--AAAAAAATCATCAA
66 GATGAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTTCA-TGCAAAAAAAATCATCAA
* * * * *
2693463 TATCA-TTTATCCTAATGAGGAGAATGTGTTTATCGTGCGTAATCACAAAATGAATGGAGATGAA
130 TAT-AGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAT
** * * * *
2693527 TACTAGAGCCCTCATTTGTCTCAGTTGAGGCACGAACTTAGACTTTGCAAATATTGGTGGCAAGA
194 TACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGA
* * * * *
2693592 ATGCCTTTCTTACGAAACCAAAGCATCAATATCTTTTATCCTTATGAGAAGACAATGTTTATAGT
259 AAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGT
* *
2693657 GCCTAATCATGAAGAGAATAGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAAC
324 GCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAAC
* *
2693722 TTTACTTCTACCAAAAACGGTGGAAAGAAAACATTTTATTGCGACACCAAAGCATCAATGTCATG
389 TTTACTTCTATCAAAAACGGTGGAAAGAAAACATTTTCTTGCGACACCAAAGCATCAATGTCATG
*
2693787 TATCCTAATGAAGGGAATATG
454 TATCCTAATGAAGGGAATGTG
* * * *
2693808 TTCTTAG-TTCCCAATCTCGAAAACAATGGAGACTCTTATGAGAATCGATGCTTGTCATAATTAA
1 TT-TT-GCTTCCCAATCTCGAAAAGAATGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAA
* * **
2693872 GGGATGAATGTTT-ATATTAAGGAAAATAGGTCAAAGAAAGGATTTTCATGCAAAAGAAAATTGT
64 GGGATGAAT-TTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAA-AAAATCAT
* * *
2693936 GAATGTAGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATGACAAAATGAATGAAGATC
127 CAATATAGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATC
* *
2694001 ATTACTAGAATCCTCGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAAGTT-TTGGCA
192 ATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA-TTGGTGGCA
** * * *
2694065 AGAAAGCCTTTCTTGTGAAACCAAAGCATCAATAACGTGTATCCTGATGAGTAGGA-AAAGTTTA
256 AGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAG-AAGACAAAGTTTA
* *
2694129 TGGTGCCTAATCATGGAAAGAGTGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGAC
320 TGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGAC
* * *
2694194 AAACTTTGCTTCTATCAAAAACTGTGGAAAGAAAACATTTTCTTACGACACCAAAGCATCAATGT
385 AAACTTTACTTCTATCAAAAACGGTGGAAAGAAAACATTTTCTTGCGACACCAAAGCATCAATGT
*
2694259 CACGTATCCTAATGAAGGGAATGTG
450 CATGTATCCTAATGAAGGGAATGTG
* * * *
2694284 CTTTTGCTTCCCAATCTCGAAAAGAGTAGAGACTTTTATAAGAATTGATGCTTGTCGTATTTAAG
1 -TTTTGCTTCCCAATCTCGAAAAGAATGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAG
** * * * *
2694349 GGATGAATTTTGATATTAAGGAAAGGAGGACAAAGAAAAGA-TTTCAATGGAAAAGAAAATCGTT
65 GGATGAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTTC-ATGCAAAA-AAAATCATC
* * * * * * * * * *
2694413 AATATTGTTTGTCCTACTAAAGAGAATTTTTTTAGAGTGCCTAATCCCAAATTGAATGAAGATCA
128 AATATAGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* * * * * * *
2694478 TTAATATAGTCCTCGTTTGTCTCATTTAAGGCACGAACATAGACTTTGCAGAAATTGGTGGCAAG
193 TTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAG
* * *
2694543 AAAGCCTTTCTTACAAAACCAAAGCATCAATATCCTTTATCCTTATGAGAAGACAAAGTTTATGG
258 AAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGG
*
2694608 TACCTAATCATGAAAA-AACTGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAA
323 TGCCTAATCATGAAAAGAA-TGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAA
*
2694672 ATTTTACTTCTATCAAA
387 ACTTTACTTCTATCAAA
2694689 GTCTATGGTG
Statistics
Matches: 2837, Mismatches: 366, Indels: 96
0.86 0.11 0.03
Matches are distributed among these distances:
470 1 0.00
471 264 0.09
472 164 0.06
473 158 0.06
474 489 0.17
475 378 0.13
476 1292 0.46
477 91 0.03
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (474 bp):
TTTTGCTTCCCAATCTCGAAAAGAATGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGG
GATGAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAAAAATCATCAAT
ATAGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
CTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAA
GCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTGC
CTAATCATGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTT
TACTTCTATCAAAAACGGTGGAAAGAAAACATTTTCTTGCGACACCAAAGCATCAATGTCATGTA
TCCTAATGAAGGGAATGTG
Found at i:2693615 original size:950 final size:950
Alignment explanation
Indices: 2690970--2694688 Score: 5116
Period size: 950 Copynumber: 3.9 Consensus size: 950
2690960 ATTCTTTTGC
* * * * *
2690970 TTCCCAATCTTC-AAAAGAGTGGAGACTTTTATGTGAATTGATGCTTGTCATATTTAAGAGATGA
1 TTCCCAATC-TCAAAAAGAATGGAGACTCTTATGAGAATTGATGCTTGTCATAATTAAGGGATGA
* * * * * *
2691034 GTTTTGATATTAAGTAAAATAGGGCAAAGAAAAGA-TTTCCT-TAGAAAAAAATCATGAATATCG
65 ATGTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCA-AAAAAAATCATGAATATAG
* * * *
2691097 TTTATCTTACA-GAGGAGAATGTGTTTATGGTGCTTAATCACAAAATGAATGAAGATTATTACTA
129 TTTATCCTA-ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
*
2691161 GAATCCTCGTTTGTCTTA-TTAAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGAC
193 GAATCCTCGTTTGTCTTATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCC
* * * * *
2691225 TTTCTAACAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTAATGGTGCCTA
258 TTTCTTACGAAACCAAAGCATCAATAACGTGTATCCTGATGAGAAGACAAAGTTTATGGTGCCTA
*
2691290 ATCATGAAAAGAATGGGGATTAGCATGACAATTCATGCTTGTCTTATTTAAGAGACAAACTTTAC
323 ATCATGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTTAC
* * *
2691355 TTCTATCAAAAACGGTGGAAAGACAACATTTTCTTGCGACACCAAAGCATCGATGTCATGTATCC
388 TTCTATCAAAAATGGTGGAAAGAAAACATTTTCTTGCGACACCAAAGCATCAATGTCATGTATCC
* * * * *
2691420 TAATGAAGGGAATGT-GTTTTAGC-TCCTAATCTCGAAAAGAATGGAGACTCTTATGAGAATCGA
453 TAATGAAGGGAATGTCCTTTT-GCTTCCCAATCTCGAAAAGAATAGAGACTTTTATGAGAATTGA
* * * * * * * * * * *
2691483 TGCATGTCATAATTAAGGAATGAATATTCATATTAAGGAAAATC-GGGCAACTGAAATGATTTTC
517 TGCCTGTCATATTTAAGGGATGAATTTTGATATTAA-GTAAAGCAAGGCAA-AGAAAAGATTTCC
* ** * * * *
2691547 ATGCAAAAGAAAATTGTGAATGTCGTTTGTCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
580 ATGGAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * ** * *
2691612 CAAAATGAATGAAGATCATTACAAAAAACCTCGTTTGTCT-TGTTTGAGGCACGAACTTAGACTT
645 CAAAATGAATGAAGATCATTACTAGAGTCCTCATTTGTCTCAG-TTGAGGCACGAACTTAGACTT
* * * * * * *
2691676 TACAAAAATTGGTGGCAAGAAAACCGTTCTTGCGAAACCAAAGCATCAATAACGTGTATCCATAA
709 TAC-AAAATTGGTGGCAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCTTGTATCCTTAT
* * * *
2691741 GAGAAGACAAAGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGCATGATAATTCATGTTT
773 GAGAAGACAAAGTTTATGGTGCCTAATCATGAAGAGAATAGGGATTAGCATGACAATTCATGTTT
*
2691806 GTCTTATTTAAGAGACAAACTTTACTTCTATAAAAAACGGTGGAAAGAAAACATTTTCTTGCGAC
838 GTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGTGGAAAGAAAACATTTTCTTGCGAC
* * * *
2691871 ACCAAGGCATTAATGCCATGTATCCTAATGAAGGGAATGTGTT-TTTG
903 ACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTAG
* * * * * *
2691918 CTTCCCAAACTCAAAAAGAGTGGAGACTTTTATGAGAATTGATGCTTGTCATATTTATGGGATTA
1 -TTCCCAATCTCAAAAAGAATGGAGACTCTTATGAGAATTGATGCTTGTCATAATTAAGGGATGA
* ** * * * *
2691983 ATTTTGATATTAATTAAAATAGGGCAAAGAAAAGATTTCCATGGAAAAAAAATCATCAATATCGT
65 ATGTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAAAAATCATGAATATAGT
* * * **
2692048 TTATCCTAACGAGGAGAATGTGTTTATAGTGCGTAATCACAAAATGAATGAAGATGAACACTA-A
130 TTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGA
* * *
2692112 AGTCCTCATTTGTCTCAGTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCCT
195 A-TCCTCGTTTGTCTTATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCCT
* * *
2692177 TTCTTACGAAACCAAAGCATCAATATCGTGTATCCAT-AGGAGAAGACAAAGTTTATGGTGCTTA
259 TTCTTACGAAACCAAAGCATCAATAACGTGTATCC-TGATGAGAAGACAAAGTTTATGGTGCCTA
* *
2692241 ATCTTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTTTC
323 ATCATGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTTAC
* * *
2692306 TTTTATCAAAAATGGT-GAAA-AAAACATTTTTTTGCGACACCAAAGCATCAATGTCAGGTATCC
388 TTCTATCAAAAATGGTGGAAAGAAAACATTTTCTTGCGACACCAAAGCATCAATGTCATGTATCC
*
2692369 TAATGAAGGGAATGTCCTTTTGCTTTCCAATCTCGAAAA-AATAGAGACTTTTATGAGAATTGAT
453 TAATGAAGGGAATGTCCTTTTGCTTCCCAATCTCGAAAAGAATAGAGACTTTTATGAGAATTGAT
* *
2692433 GACTGTCATATTTAAGGGATGAATTTTGATATTAAGTAAAACAAGGCAAAGAAAAGATTTCCATG
518 GCCTGTCATATTTAAGGGATGAATTTTGATATTAAGTAAAGCAAGGCAAAGAAAAGATTTCCATG
* * * *
2692498 G-AAA-AAAATCATCAATATCATTTATCCTAACGAGGAGAATGCGTTTATAGTTCGTAATCACAA
583 GAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAA
* * * *
2692561 AATGATTGATGATCAGTACTAGAGTCCTCATTTGTCTCAATTGAGGCACGAACTTAGACTTTAAC
648 AATGAATGAAGATCATTACTAGAGTCCTCATTTGTCTCAGTTGAGGCACGAACTTAGACTTT-AC
* * *
2692626 AAAATCGGTGGCAAGAAAGCCTTTCTTACGAATCCAAAGCATTAATATCTTGTATCCTTATGAGA
712 AAAATTGGTGGCAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCTTGTATCCTTATGAGA
* *
2692691 AGACAATGTTTATGGTGTCTAATCATGAAGAGAATAGGGATTAGCATGACAATTCATGTTTGTCT
777 AGACAAAGTTTATGGTGCCTAATCATGAAGAGAATAGGGATTAGCATGACAATTCATGTTTGTCT
* * *
2692756 TATTTAAGAGATAAACTTTACTTCTATCAAAAACGGTGGAAGGAAAACATTTTCTTACGACACCA
842 TATTTAAGAGACAAACTTTACTTCTATCAAAAACGGTGGAAAGAAAACATTTTCTTGCGACACCA
*
2692821 AAACATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTAG
907 AAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTAG
* *
2692865 TTCCCAATCTCAAAAAGAATGGGGACTCTTATGAGAATCT-ATACTTGTCATAATTAAGGGATGA
1 TTCCCAATCTCAAAAAGAATGGAGACTCTTATGAGAAT-TGATGCTTGTCATAATTAAGGGATGA
* * * *
2692929 ATGTTGATATTAAGGAAAATAGGGCAAAGAAAGGATTTTCATGCAAAAGAAAATTATAAATGTAG
65 ATGTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAA-AAAATCATGAATATAG
* *
2692994 TTTATCCTAATGAGGAGAATGTGTTTAAAGTGCCTAATGACAAAATGAATGAAGATCATTACTAG
129 TTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG
* *
2693059 AATCCTCGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAAGTT-TTGGCAAGAAAGCC
194 AATCCTCGTTTGTCTTATTTAAGGCACGAACTTAGACTTTACAAAAA-TTGGTGGCAAGAAAGCC
** * * *
2693123 TTTCTTGTGAAACCAAAGCATCAGTAACGTTTATCCTGATGAGAAGGCAAAGTTTATGGTGCCTA
258 TTTCTTACGAAACCAAAGCATCAATAACGTGTATCCTGATGAGAAGACAAAGTTTATGGTGCCTA
* * *
2693188 ATCTTGAAAATAATGGGGATTAGCATGACAATTCATGTTTTTCTTATTTAAGAGACAAACTTTAC
323 ATCATGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTTAC
* * * *
2693253 TTCTATCAGAAATGGTGGAAAGAAAATATTTTTTTGCGACACCAAAGCATCAATGTCATGTATTC
388 TTCTATCAAAAATGGTGGAAAGAAAACATTTTCTTGCGACACCAAAGCATCAATGTCATGTATCC
* * * *
2693318 TAATGAAGGGAATGTCCTTTTGCTTCCCAATCTCGAGAAGAGTGGAGACTTTTATGAGAATTAAT
453 TAATGAAGGGAATGTCCTTTTGCTTCCCAATCTCGAAAAGAATAGAGACTTTTATGAGAATTGAT
*
2693383 GCCTGTCATATTTAAGGGATGAATTTTGATATTAAGTAAAGCAAGGCAAAGAAAAGATTTCCATT
518 GCCTGTCATATTTAAGGGATGAATTTTGATATTAAGTAAAGCAAGGCAAAGAAAAGATTTCCATG
* *
2693448 G-AAA-AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATCGTGCGTAATCACAA
583 GAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAA
* * * * *
2693511 AATGAATGGAGATGAATACTAGAGCCCTCATTTGTCTCAGTTGAGGCACGAACTTAGACTTTGCA
648 AATGAATGAAGATCATTACTAGAGTCCTCATTTGTCTCAGTTGAGGCACGAACTTAGACTTTACA
* *
2693576 AATATTGGTGGCAAGAATGCCTTTCTTACGAAACCAAAGCATCAATATCTTTTATCCTTATGAGA
713 AA-ATTGGTGGCAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCTTGTATCCTTATGAGA
* *
2693641 AGACAATGTTTATAGTGCCTAATCATGAAGAGAATAGGGATTAGCATGACAATTCATGTTTGTCT
777 AGACAAAGTTTATGGTGCCTAATCATGAAGAGAATAGGGATTAGCATGACAATTCATGTTTGTCT
* *
2693706 TATTTAAGAGACAAACTTTACTTCTACCAAAAACGGTGGAAAGAAAACATTTTATTGCGACACCA
842 TATTTAAGAGACAAACTTTACTTCTATCAAAAACGGTGGAAAGAAAACATTTTCTTGCGACACCA
*
2693771 AAGCATCAATGTCATGTATCCTAATGAAGGGAATATGTTCTTAG
907 AAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTAG
* * *
2693815 TTCCCAATCTCGAAAACAATGGAGACTCTTATGAGAATCGATGCTTGTCATAATTAAGGGATGAA
1 TTCCCAATCTCAAAAAGAATGGAGACTCTTATGAGAATTGATGCTTGTCATAATTAAGGGATGAA
* * * ** *
2693880 TGTTTATATTAAGGAAAATAGGTCAAAGAAAGGATTTTCATGCAAAAGAAAATTGTGAATGTAGT
66 TGTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAA-AAAATCATGAATATAGT
*
2693945 TTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATGACAAAATGAATGAAGATCATTACTAGA
130 TTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGA
* *
2694010 ATCCTCGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAAGTT-TTGGCAAGAAAGCCT
195 ATCCTCGTTTGTCTTATTTAAGGCACGAACTTAGACTTTACAAAAA-TTGGTGGCAAGAAAGCCT
** *
2694074 TTCTTGTGAAACCAAAGCATCAATAACGTGTATCCTGATGAGTAGGA-AAAGTTTATGGTGCCTA
259 TTCTTACGAAACCAAAGCATCAATAACGTGTATCCTGATGAG-AAGACAAAGTTTATGGTGCCTA
* * *
2694138 ATCATGGAAAGAGTGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGC
323 ATCATGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTTAC
* *
2694203 TTCTATCAAAAACT-GTGGAAAGAAAACATTTTCTTACGACACCAAAGCATCAATGTCACGTATC
388 TTCTATCAAAAA-TGGTGGAAAGAAAACATTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* * *
2694267 CTAATGAAGGGAATGTGCTTTTGCTTCCCAATCTCGAAAAGAGTAGAGACTTTTATAAGAATTGA
452 CTAATGAAGGGAATGTCCTTTTGCTTCCCAATCTCGAAAAGAATAGAGACTTTTATGAGAATTGA
* * * * *
2694332 TGCTTGTCGTATTTAAGGGATGAATTTTGATATTAAGGAAAG-GAGGACAAAGAAAAGATTTCAA
517 TGCCTGTCATATTTAAGGGATGAATTTTGATATTAAGTAAAGCAAGG-CAAAGAAAAGATTTCCA
* * ** * * * * * * * *
2694396 TGGAAAAGAAAATCGTTAATATTGTTTGTCCTACTAAAGAGAATTTTTTTAGAGTGCCTAATCCC
581 TGGAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC
* * * * * * * *
2694461 AAATTGAATGAAGATCATTAATATAGTCCTCGTTTGTCTCATTTAAGGCACGAACATAGACTTTG
646 AAAATGAATGAAGATCATTACTAGAGTCCTCATTTGTCTCAGTTGAGGCACGAACTTAGACTTTA
*
2694526 CAGAAATTGGTGGCAAGAAAGCCTTTCTTACAAAACCAAAGCATCAATATCCTT-TATCCTTATG
711 CA-AAATTGGTGGCAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATAT-CTTGTATCCTTATG
* * *
2694590 AGAAGACAAAGTTTATGGTACCTAATCATGAA-AAAACTGGGGATTAGCATGACAATTCATGTTT
774 AGAAGACAAAGTTTATGGTGCCTAATCATGAAGAGAA-TAGGGATTAGCATGACAATTCATGTTT
*
2694654 GTCTTATTTAAGAGACAAATTTTACTTCTATCAAA
838 GTCTTATTTAAGAGACAAACTTTACTTCTATCAAA
2694689 GTCTATGGTG
Statistics
Matches: 2490, Mismatches: 249, Indels: 59
0.89 0.09 0.02
Matches are distributed among these distances:
946 407 0.16
947 263 0.11
948 28 0.01
949 288 0.12
950 1069 0.43
951 189 0.08
952 241 0.10
953 5 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (950 bp):
TTCCCAATCTCAAAAAGAATGGAGACTCTTATGAGAATTGATGCTTGTCATAATTAAGGGATGAA
TGTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAAAAATCATGAATATAGTT
TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAA
TCCTCGTTTGTCTTATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCCTTT
CTTACGAAACCAAAGCATCAATAACGTGTATCCTGATGAGAAGACAAAGTTTATGGTGCCTAATC
ATGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTTACTTC
TATCAAAAATGGTGGAAAGAAAACATTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAA
TGAAGGGAATGTCCTTTTGCTTCCCAATCTCGAAAAGAATAGAGACTTTTATGAGAATTGATGCC
TGTCATATTTAAGGGATGAATTTTGATATTAAGTAAAGCAAGGCAAAGAAAAGATTTCCATGGAA
AAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAT
GAATGAAGATCATTACTAGAGTCCTCATTTGTCTCAGTTGAGGCACGAACTTAGACTTTACAAAA
TTGGTGGCAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCTTGTATCCTTATGAGAAGAC
AAAGTTTATGGTGCCTAATCATGAAGAGAATAGGGATTAGCATGACAATTCATGTTTGTCTTATT
TAAGAGACAAACTTTACTTCTATCAAAAACGGTGGAAAGAAAACATTTTCTTGCGACACCAAAGC
ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTAG
Found at i:2695044 original size:19 final size:19
Alignment explanation
Indices: 2695020--2695075 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
2695010 GTATTGATAC
**
2695020 ATTGTATCGATACATGTTA
1 ATTGTATCGATACATGACA
*
2695039 ATTGTATCAATACATGGACA
1 ATTGTATCGATACAT-GACA
2695059 ATTGTATCGATACATGA
1 ATTGTATCGATACATGA
2695076 GATTGGCAGT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
19 16 0.50
20 16 0.50
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.36
Consensus pattern (19 bp):
ATTGTATCGATACATGACA
Found at i:2695063 original size:20 final size:20
Alignment explanation
Indices: 2695020--2695074 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
2695010 GTATTGATAC
**
2695020 ATTGTATCGATACAT-GTTA
1 ATTGTATCGATACATGGACA
*
2695039 ATTGTATCAATACATGGACA
1 ATTGTATCGATACATGGACA
2695059 ATTGTATCGATACATG
1 ATTGTATCGATACATG
2695075 AGATTGGCAG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 14 0.45
20 17 0.55
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.36
Consensus pattern (20 bp):
ATTGTATCGATACATGGACA
Found at i:2695149 original size:13 final size:13
Alignment explanation
Indices: 2695119--2695149 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
2695109 CGATACATGG
*
2695119 TACAATGTATCGA
1 TACATTGTATCGA
2695132 TACATTGTATCGA
1 TACATTGTATCGA
2695145 TACAT
1 TACAT
2695150 GATGAATTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.35
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:2695161 original size:33 final size:33
Alignment explanation
Indices: 2695105--2695169 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
2695095 TCCACTGTTG
* *
2695105 GTATCGATACATGGTACAATGTATCGATACATT
1 GTATCGATACATGATACAATGTATCAATACATT
*
2695138 GTATCGATACATGATGA-ATTGTATCAATACAT
1 GTATCGATACATGAT-ACAATGTATCAATACAT
2695170 AGCTTGTAAC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 27 0.96
34 1 0.04
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.34
Consensus pattern (33 bp):
GTATCGATACATGATACAATGTATCAATACATT
Found at i:2703804 original size:33 final size:33
Alignment explanation
Indices: 2703762--2703826 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
2703752 TCCACTGTTA
2703762 GTATCGATACATGAT-ACAATGTATCGATACATT
1 GTATCGATACATGATGA-AATGTATCGATACATT
*
2703795 GTATCGATACATGATGAATTGTATCGATACAT
1 GTATCGATACATGATGAAATGTATCGATACAT
2703827 AACTTGTAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 29 0.97
34 1 0.03
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.34
Consensus pattern (33 bp):
GTATCGATACATGATGAAATGTATCGATACATT
Found at i:2703806 original size:13 final size:13
Alignment explanation
Indices: 2703774--2703806 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
2703764 ATCGATACAT
*
2703774 GATACAATGTATC
1 GATACATTGTATC
2703787 GATACATTGTATC
1 GATACATTGTATC
2703800 GATACAT
1 GATACAT
2703807 GATGAATTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.33
Consensus pattern (13 bp):
GATACATTGTATC
Found at i:2706116 original size:475 final size:476
Alignment explanation
Indices: 2705081--2715355 Score: 13447
Period size: 476 Copynumber: 21.7 Consensus size: 476
2705071 TTTATTTAAG
* * * **
2705081 AGAAAACATTTTCTTGCGACACCAAAGCATCAATGTCAGGTATCTTAATGAAAAGAATGTG-TTC
1 AGAAAACATTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTT-
* * * * *
2705145 TTAGC-TCCCAATCTCAAAAAGAATGGAGACTCTTACGAGAATCGATGCTTGTCATATTTAAGGG
65 TT-GCTTCCCAATCTCGAAAAGAGTGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGGG
* * *
2705209 ATGAATTTTGATATTAGGGAAAATAGGGCAAAGAAAAGATTTCCACT-CAAAAGAAAATCGTGAA
129 ATGAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTT-CAATGCAAAAGAAAATCGTCAA
* * * *
2705273 GATCGTTTATACTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAACATCATT
193 TATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATT
* * *
2705338 ACT---A-----GTTTGTCTCATTTAAGGCACGAACTTTGATTTTACAAAAATTGGTGGCAAGAA
258 ACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAA
* *
2705395 AGCCTTTCTTACGAAACCAAAACATCAATATCGTGTATCCTTACGAGAAGACAAAGTTTATGGTG
323 AGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTG
*
2705460 CCTAATCATGAAAA-AATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACT
388 CCTAATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACT
** * *
2705524 TTTTTTCTATAAAAAACAGTGGAA
453 TTACTTCTATCAAAAACGGTGGAA
* * * * *
2705548 AGAAAACATTTTCTTGCGATGCCAAAGCATGAATGTTAGGTATCCTAATGAAGGAAATGTG-TTC
1 AGAAAACATTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTT-
* * * * * *
2705612 TTAGC-TCCCAATCTCAAAAAGAATGGAGACTCTTATGAGAATCGATGCTTGTCATAATTAAGCG
65 TT-GCTTCCCAATCTCGAAAAGAGTGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGGG
* * * * * *
2705676 ATGAATTTCGATATTAGGGAAAATAGGGAAAAAAAAAGATTTCTATGCAAAAGAAAATCGTGAAT
129 ATGAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCGTCAAT
* *
2705741 ATCGTTTATCCTAATGAGGAGAATGTGTTTATAGCGCCTAATCACAAAAGGAATGAAGATCATTA
194 ATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
*
2705806 CTAGGATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAA
259 CTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAA
* *
2705871 GCCTTTGTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGCTTATGGTGC
324 GCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTGC
* *
2705936 ATAATCATGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTT
389 CTAATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTT
*
2706001 T-TTTCTATCAAAAACGGTGGAA
454 TACTTCTATCAAAAACGGTGGAA
* * * * * *
2706023 AGAAAACATTTTCTTGCAACACCAAAGCATCTATGTCAGGTATCTTAATAAAGGGAATGTGCTTT
1 AGAAAACATTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTT
* * * *
2706088 TGCTTCCCAATCTCGAAAAGAGTGGAGACTTTCACGAGAATTGATACTTGTCATATTTATGGGAT
66 TGCTTCCCAATCTCGAAAAGAGTGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGGGAT
* * * * *
2706153 GAATTTTGATATTATGTAAAACAGTGCAAAGAAAAGATTTCAATGGAAAAGAAAATCGTCAATAT
131 GAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCGTCAATAT
* * * *
2706218 CGTTTATCCTAATGAGGAGAATGTGATTATAGTGCTTAATCACAAAATGAATGAGGATCTTTACT
196 CGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
*
2706283 AGAATCCTCGTTTGCCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGC
261 AGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGC
* * * *
2706348 CTTTCTTACGAATCCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACAAATTTTATGATGCCT
326 CTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCT
* *
2706413 AATCGTGAAAAGGGA-GGGGATTAGCATGACAATTCATGTTTGCCTTATTTAAGAGACAAACTTT
391 AATCGTGAAAA-GAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTT
* *
2706477 ACTTCTATCAATAATGGTGGAA
455 ACTTCTATCAAAAACGGTGGAA
* * * *
2706499 AGAAAACCTTTTCTTGCGATTCCAAAGCATCAATGTCATGTATCCTAATAAAAGGAATGTGCTTT
1 AGAAAACATTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTT
* * *
2706564 TGCTTCTCAATCTTGAAAAGAGTGGAGACTTTTATGAGAATTGATGATTGTCATATTTAAGGGAT
66 TGCTTCCCAATCTCGAAAAGAGTGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGGGAT
* * * * *
2706629 GAATTTTGATATTAAGGAAAATAGGGCAAAAAAAAGATTTCAATGAAAAAAAAAATCGTTAGTAT
131 GAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCGTCAATAT
* * * *
2706694 CATTCATCCTACTGAGGAGAATGTGTTTATAGTGCCTAATCAAAAAATGAATGAAGATCATTACT
196 CGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
* * *
2706759 AGAATCCTCGTTTGTCTCATTTGGGGCACGAACTTAGACTTTGCAGAAATTGGTGGCAAGAAAGC
261 AGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGC
* * * * * *
2706824 CTTTCCTACGAAACCAAAGCATCAATATTGTGTATCCTTATAAGAAGACGATGTTTATGCTGCCT
326 CTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCT
* ** * * *
2706889 AATCGTGAAAAGAATGGGGACTAGCATGAGTATT-ATTGTTTGTCTTATTTAGGTGATAAACTTT
391 AATCGTGAAAAGAATGGGGATTAGCATGACAATTCA-TGTTTGTCTTATTTAAGAGACAAACTTT
* *
2706953 ACTTCTATAAAAAACAGTGGGAA
455 ACTTCTATCAAAAACGGT-GGAA
* * * * *
2706976 GGAAATC-TTTTCTTGCGATACCATAGCATCAATGTCTTGTATCCTGATGAAGGGAATGTG-TTC
1 AGAAAACATTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTT-
* * * *
2707039 TTAG-TTCCAAATCTCGAAAAGATTGGAGACTCTTA-GAAGAATCT-ATGCTTGTCATAATTAAG
65 TT-GCTTCCCAATCTCGAAAAGAGTGGAGACTTTTATG-AGAAT-TGATGCTTGTCATATTTAAG
* * *
2707101 GGATGAATTTCGATATTAAGGAAAATAAGGCAAAGAAAAGTTTTCAATGCAAAAGAAAAATCGTC
127 GGATGAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAG-AAAATCGTC
*
2707166 AATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCAAATCACAAAATGGAA-GAAGATC
191 AATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAT-GAATGAAGATC
* * * * * *
2707230 ATTACTGGAATCCTCATTTGCCTCATTTGAGCCACGAACTTCGACTTTACAAAAATTAGTGGCAA
255 ATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAA
* * * * * *
2707295 TAAAGCTTTTCTTACAAAACCAACGCATCAATATCGTGTATCCCTATGAGAAGACAAATTTTATG
320 GAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATG
* * * * * * *
2707360 GTGCCTAATCGTGAAAAGAGTGGGGATTGGCATGACAATTCGTGTTTATCTTATTTAAGAAATAT
385 GTGCCTAATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAA
* *
2707425 ACTTTATTTCTATCAAAAACGATGGAA
450 ACTTTACTTCTATCAAAAACGGTGGAA
* * * * *
2707452 AGAAAAC-TTTTGTTGCGATTCCAAAGCGTCAATGTCATGTATCCTAATAAAGGGCATGTGCTTT
1 AGAAAACATTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTT
* * * * *
2707516 TGCTTCTCAATCTTGAAAAGAGCGGAGACTTTTATGAGAATTGATGATTGTCTTATTTAAGGGAT
66 TGCTTCCCAATCTCGAAAAGAGTGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGGGAT
* *
2707581 GAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAAT--AAAAAAAAATCGTTAATAT
131 GAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCGTCAATAT
* *
2707644 CATTTATCCTACTGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
196 CGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
* * *
2707709 AGAATCCTCGTTTGTCTCATTTGAGGCACGAGCTTAGACTTTGCAGAAATTGGTGGCAAGAAAGC
261 AGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGC
* * *
2707774 CTTTCTTATGAAACCAAAGCATCGATATCGTGTATCCTTATGAGAAGACAACGTTTATGGTGCCT
326 CTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCT
* *
2707839 AATCGTGAAAAGAGTGGGGATTAGCCTGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTTA
391 AATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTTA
* *
2707904 CTTCTATCAAAAATGGTAGAA
456 CTTCTATCAAAAACGGTGGAA
*
2707925 AGAAAACCTTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCT-AT--------T-TGC--T
1 AGAAAACATTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTT
* * * * * * * *
2707978 T--AT--CAATCTTGAAAAGGGTGGGGACTTTTTTGAGAATTGATGCTTGTCGTATTTAAGGCAC
66 TGCTTCCCAATCTCGAAAAGAGTGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGGGAT
* * * * *
2708039 GAATTTTGATATTAAGGAAAACAGGGCAAAGAAAAGATTTCAAGGGAAAAATAAAATCGTTAATA
131 GAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAA-TGCAAAAGAAAATCGTCAATA
* * *
2708104 TCGTTTATCCTAAAGAGGATAATGTGTTTATAGTCCCTAATCACAAAATGAATGAAGATCATTAC
195 TCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
* * *
2708169 TAGAATCCTCGTTTGTCTCATTTGAGGCATGAATTTAGACTTTACAAAAGTTGGTGGCAAGAAAG
260 TAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAG
* *
2708234 CCTTTCTTACGAAACCAAAGCATCAATATCGTGAATCCTTATGAGAAGACAAAGTTTGTGGTGCC
325 CCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCC
* * *
2708299 TAGTCGTGAAAAGAGTGGGGATTGGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTT
390 TAATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTT
*
2708364 ACTTCTATCAAAAATGGTGGAA
455 ACTTCTATCAAAAACGGTGGAA
* * **
2708386 AGAAAA-ACTTTTCTTGCCATTCCAAA-CTATCAATGTCATGTATCCTAATGAATTGAATGTGCT
1 AGAAAACA-TTTTCTTGCGATACCAAAGC-ATCAATGTCATGTATCCTAATGAAGGGAATGTGCT
** * * * *
2708449 TTTGCTTTTCAATCTTGGAAAGAGCGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGG
64 TTTGCTTCCCAATCTCGAAAAGAGTGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGGG
* * * *
2708514 ATGAATTTTGATATTAAGGAAAACAGGGCAAAGAAAAGATTTCAATGGAAAAGAAAATCGTTATT
129 ATGAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCGTCAAT
* * *
2708579 ATCATTTATCCTATTGAGGAGAATGTGTTTATAGTGCCTTATCACAAAATGAATGAAGATCATTA
194 ATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
* * *
2708644 CTAGAATCCTCGTTTGTCTCATTTGAGGTATGAACTTAGACTTTACAAAAATTGGTGGTAAGAAA
259 CTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAA
* * * * *
2708709 GCCATTCTTACGAAACCAAAGCATCAATATCCTGTATTCTTCTGAGAAGACAATGTTTATGGTGC
324 GCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTGC
* * * * * * * *
2708774 CTAATTGTGAAAAGAATGGGGACTAGCGTGACTATTCTTGTTTGTCCTATCTAACAGACAAACTT
389 CTAATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTT
*
2708839 TACTTCAATCAAAAACGGTGGAA
454 TACTTCTATCAAAAACGGTGGAA
* *
2708862 AGAAAACTTTTTCTTGC-AGCACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TT
1 AGAAAACATTTTCTTGCGA-TACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTT
* * * * * * * *
2708925 CTTAGC-TCCCAATCTCGGAAAGAATGGAGACTCTTACGAGAATCGATGCTTATCGTAATTAAGG
65 -TT-GCTTCCCAATCTCGAAAAGAGTGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGG
* * * * *
2708989 GATGAATTTTGAAATTAATGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATGAA
128 GATGAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCGTCAA
* *
2709054 TATCGTTGATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATT
193 TATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATT
* * **
2709119 ACTAGAATCCTCGTTTGTCTCATTTAAGGCATGAACTTAGACTTTAC-AAAATTGGTAACAAGAA
258 ACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAA
* * * * *
2709183 AGCCTTTCCTGCGAAACCAAAGCATCAATATCATCTATCCTTATGAGAAGAGAAAGTTTATGGTG
323 AGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTG
* *
2709248 CCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTTTTTAAGAGACAAACT
388 CCTAATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACT
*
2709313 TTACTTCTATCAAAAACGGTGGGA
453 TTACTTCTATCAAAAACGGTGGAA
* * * * *
2709337 AGAAAAGATTTTCTTGTGACACCAAAGCATCAGTGTCCTGTATCCTAATGAAGGGAATGTG-TTC
1 AGAAAACATTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTT-
* ** * * ** * * * * *
2709401 TTAG-TTCCTAATCTTAAAAAGAATGGAGACTCTTACAAAAATCGATGCCTGTCACAATTAAGGG
65 TT-GCTTCCCAATCTCGAAAAGAGTGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGGG
* *
2709465 ATGAATTTCGATATTAAGGAAAATAAGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCGTCAAT
129 ATGAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCGTCAAT
* * * *
2709530 ATCGTTTATCCTAACGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATAAAAGAAGATCAATA
194 ATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
* *
2709595 CTCGAATCCTCGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGCAAGAAA
259 CTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAA
*
2709660 GCTTTTCTTACG-AACACAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTG
324 GCCTTTCTTACGAAAC-CAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTG
* * *
2709724 CCTAATCATGAAAAGAATGGGGACTAGCATGACAATTCGTGTTTGTCTTATTTACA-AGACAAAC
388 CCTAATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTA-AGAGACAAAC
*
2709788 TTT-CTTCTATCAAAAATC-GTGGAC
452 TTTACTTCTATCAAAAA-CGGTGGAA
* * * * * * * *
2709812 ACAAAACATTTTCTTGGGACACGAAAGCATCAGTGTCCTTTATCCTAATGAAGGGAATATG-TTC
1 AGAAAACATTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTT-
* * ** * * * * *
2709876 TTAG-TTCCCAATCACGAAAAGAATGGAGACGCTTATGGGAATCGATGCTTGTCGTAATTAGGGG
65 TT-GCTTCCCAATCTCGAAAAGAGTGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGGG
* * * * * * *
2709940 ATGAATATTGAAATTAAGGAAAACAAGGCAAAGAAAAGATTTGC-ATGCAAAAGAAAATCATGAC
129 ATGAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTT-CAATGCAAAAGAAAATCGTCAA
* * * *
2710004 TATCGTTTATCCCAATGAGGAGAATGTGTTTATAGTGCCTAATAACAAAAAGAATGAGGATCATT
193 TATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATT
* * *
2710069 ACTAGAATCCTCGTTTGTCTCATTTGAGGCATGAACATAGACTTTGCAAAAATTGGTGGCAAGAA
258 ACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAA
* * * * *
2710134 GGCATTTCTTAC-AAACCCAAAGCATCAATATCATATATCCTTATGATAAGACAAAGTTTATGGT
323 AGCCTTTCTTACGAAA-CCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGT
* * * *
2710198 ACCTAATCATCAAAAGAATGGGGACTAGCATGACAATTCATGTTTGTCTTATTTACA-AGACAAA
387 GCCTAATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTA-AGAGACAAA
* * * *
2710262 TTTTTCTTCTATCAAAAATGGTAGAA
451 CTTTACTTCTATCAAAAACGGTGGAA
*
2710288 AGAAAACATTTTCTTGCGATACCAAAGCTTCAATGTCATGTATCCTAATGAAGGGAATGTGCTTT
1 AGAAAACATTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTT
* * *
2710353 TCCTTCCCAATCTCGAAAATAGTTGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGGGAT
66 TGCTTCCCAATCTCGAAAAGAGTGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGGGAT
* *
2710418 GAATTTTGATATTAAGGAAAATAGTGCAAAGAAAAGATTTCAATGGAAAAGAAAATCGTCAATAT
131 GAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCGTCAATAT
* *
2710483 TGTTTATCCTAATGAGGAGAATGTGTTTATAATGCCTAATCACAAAA-GAATGAAGATCATTACT
196 CGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
* * * * *
2710547 AGAATCCTCGTTTGTCTCATTTGAGGTACGAACTTAAACTTTACAAAATTTGTTGGCAATAAAGC
261 AGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGC
* * * *
2710612 CTTTCTTATGAAACCAAAGCATCAATATCATGTATCCCTATGAGAAGACAAAGTTTATGGTACCT
326 CTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCT
* * * *
2710677 AATCGTGAAAACAGTGGGGATTGGCATGACAATTCATCTTTGTCTTATTTAAGAGACAAACTTTA
391 AATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTTA
* *
2710742 CTTCTATCAATAATGGTGGAA
456 CTTCTATCAAAAACGGTGGAA
* * * *
2710763 AGAAAACCTTTTCTTGCGATTCCAAAGCATCAATGTCATGTATCCTAATAAAAGGAATGTGCTTT
1 AGAAAACATTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTT
* * *
2710828 TGCTTCTCAATCTTGAAAAGAGTGGAGACTTTTATGAGAATTGATGATTGTCATATTTAAGGGAT
66 TGCTTCCCAATCTCGAAAAGAGTGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGGGAT
* * * * *
2710893 GAATTTTGATATTAAGGAAAATAGGGCAAAAAAAAGATTTCAATGAAAAAAAAAATCGTTAGTAT
131 GAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCGTCAATAT
* * * *
2710958 CATTCATCCTACTGAGGAGAATGTGTTTATAGTGCCTAATCAAAAAATGAATGAAGATCATTACT
196 CGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
* * *
2711023 AGAATCCTCGTTTGTCTCATTTGGGGCACGAACTTAGACTTTGCAGAAATTGGTGGCAAGAAAGC
261 AGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGC
* * * * * *
2711088 CTTTCCTACGAAACCAAAGCATCAATATTGTGTATCCTTATAAGAAGACGATGTTTATGCTGCCT
326 CTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCT
* ** * * *
2711153 AATCGTGAAAAGAATGGGGACTAGCATGAGTATT-ATTGTTTGTCTTATTTAGGTGATAAACTTT
391 AATCGTGAAAAGAATGGGGATTAGCATGACAATTCA-TGTTTGTCTTATTTAAGAGACAAACTTT
*
2711217 ACTTCTATAAAAAACAGCG-GGAA
455 ACTTCTATCAAAAAC-G-GTGGAA
* * * * *
2711240 GGAAATC-TTTTCTTGCGATACCATAGCATCAATGTCTTGTATCCTGATGAAGGGAATGTG-TTC
1 AGAAAACATTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTT-
* * * *
2711303 TTAG-TTCCAAATCTCGAAAAGATTGGAGACTCTTA-GAAGAATCT-ATGCTTGTCATAATTAAG
65 TT-GCTTCCCAATCTCGAAAAGAGTGGAGACTTTTATG-AGAAT-TGATGCTTGTCATATTTAAG
* * *
2711365 GGATGAATTTCGATATTAAGGAAAATAAGGCAAAGAAAAGTTTTCAATGCAAAAGAAAAATCGTC
127 GGATGAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAG-AAAATCGTC
*
2711430 AATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCAAATCACAAAATGGAA-GAAGATC
191 AATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAT-GAATGAAGATC
* * * * * *
2711494 ATTACTGGAATCCTCATTTGCCTCATTTGAGCCACGAACTTCGACTTTACAAAAATTAGTGGCAA
255 ATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAA
* * * * * *
2711559 TAAAGCTTTTCTTACAAAACCAACGCATCAATATCGTGTATCCCTATGAGAAGACAAATTTTATG
320 GAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATG
* * * * * * *
2711624 GTGCCTAATCGTGAAAAGAGTGGGGATTGGCATGACAATTCGTGTTTATCTTATTTAAGAAATAT
385 GTGCCTAATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAA
* *
2711689 ACTTTATTTCTATCAAAAACGATGGAA
450 ACTTTACTTCTATCAAAAACGGTGGAA
* * * * *
2711716 AGAAAAC-TTTTGTTGCGATTCCAAAGCGTCAATGTCATGTATCCTAATAAAGGGCATGTGCTTT
1 AGAAAACATTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTT
* * * * *
2711780 TGCTTCTCAATCTTGAAAAGAGCGGAGACTTTTATGAGAATTGATGATTGTCTTATTTAAGGGAT
66 TGCTTCCCAATCTCGAAAAGAGTGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGGGAT
* *
2711845 GAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAAT--AAAAAAAAATCGTTAATAT
131 GAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCGTCAATAT
* *
2711908 CATTTATCCTACTGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
196 CGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
* * *
2711973 AGAATCCTCGTTTGTCTCATTTGAGGCACGAGCTTAGACTTTGCAGAAATTGGTGGCAAGAAAGC
261 AGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGC
* * *
2712038 CTTTCTTATGAAACCAAAGCATCGATATCGTGTATCCTTATGAGAAGACAACGTTTATGGTGCCT
326 CTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCT
* *
2712103 AATCGTGAAAAGAGTGGGGATTAGCCTGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTTA
391 AATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTTA
* *
2712168 CTTCTATCAAAAATGGTAGAA
456 CTTCTATCAAAAACGGTGGAA
*
2712189 AGAAAACCTTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCT-AT--------T-TGC--T
1 AGAAAACATTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTT
* * * * * * * *
2712242 T--AT--CAATCTTGAAAAGGGTGGGGACTTTTTTGAGAATTGATGCTTGTCGTATTTAAGGCAC
66 TGCTTCCCAATCTCGAAAAGAGTGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGGGAT
* * * *
2712303 GAATTTTGATATTAAGGAAAACAGGGCAAAGAAAAGATTTCAAGGGAAAAAGAAAATCGTTAATA
131 GAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAA-TGCAAAAGAAAATCGTCAATA
* * *
2712368 TCGTTTATCCTAAAGAGGATAATGTGTTTATAGTCCCTAATCACAAAATGAATGAAGATCATTAC
195 TCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
* * *
2712433 TAGAATCCTCGTTTGTCTCATTTGAGGCATGAATTTAGACTTTACAAAAGTTGGTGGCAAGAAAG
260 TAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAG
* *
2712498 CCTTTCTTACGAAACCAAAGCATCAATATCGTGAATCCTTATGAGAAGACAAAGTTTGTGGTGCC
325 CCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCC
* * *
2712563 TAGTCGTGAAAAGAGTGGGGATTGGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTT
390 TAATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTT
*
2712628 ACTTCTATCAAAAATGGTGGAA
455 ACTTCTATCAAAAACGGTGGAA
* * **
2712650 AGAAAA-ACTTTTCTTGCCATTCCAAA-CTATCAATGTCATGTATCCTAATGAATTGAATGTGCT
1 AGAAAACA-TTTTCTTGCGATACCAAAGC-ATCAATGTCATGTATCCTAATGAAGGGAATGTGCT
** * * * *
2712713 TTTGCTTTTCAATCTTGGAAAGAGCGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGG
64 TTTGCTTCCCAATCTCGAAAAGAGTGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGGG
* * * *
2712778 ATGAATTTTGATATTAAGGAAAACAGGGCAAAGAAAAGATTTCAATGGAAAAGAAAATCGTTATT
129 ATGAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCGTCAAT
* * *
2712843 ATCATTTATCCTATTGAGGAGAATGTGTTTATAGTGCCTTATCACAAAATGAATGAAGATCATTA
194 ATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
* * *
2712908 CTAGAATCCTCGTTTGTCTCATTTGAGGTATGAACTTAGACTTTACAAAAATTGGTGGTAAGAAA
259 CTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAA
* * * * *
2712973 GCCATTCTTACGAAACCAAAGCATCAATATCCTGTATTCTTCTGAGAAGACAATGTTTATGGTGC
324 GCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTGC
* * * * * * * *
2713038 CTAATTGTGAAAAGAATGGGGACTAGCGTGACTATTCTTGTTTGTCCTATCTAACAGACAAACTT
389 CTAATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTT
*
2713103 TACTTCAATCAAAAACGGTGGAA
454 TACTTCTATCAAAAACGGTGGAA
* *
2713126 AGAAAACTTTTTCTTGC-AGCACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TT
1 AGAAAACATTTTCTTGCGA-TACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTT
* * * * * * * *
2713189 CTTAGC-TCCCAATCTCGGAAAGAATGGAGACTCTTACGAGAATCGATGCTTATCGTAATTAAGG
65 -TT-GCTTCCCAATCTCGAAAAGAGTGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGG
* * * * *
2713253 GATGAATTTTGAAATTAATGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATGAA
128 GATGAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCGTCAA
* *
2713318 TATCGTTGATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATT
193 TATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATT
* * **
2713383 ACTAGAATCCTCGTTTGTCTCATTTAAGGCATGAACTTAGACTTTAC-AAAATTGGTAACAAGAA
258 ACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAA
* * * *
2713447 AGCCTTTCTTATGAAACCAAAGCATCAATATCATCTATCCTTATGAGAAGAGAAAGTTTATGGTG
323 AGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTG
* * *
2713512 CCTAATCATGAAAAGAATGGGGATTAGCATGATAATTCATGTTTGTCTTTTTTAAGAGACAAACT
388 CCTAATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACT
*
2713577 TTACTTCTATCAAAAACGGTGGGA
453 TTACTTCTATCAAAAACGGTGGAA
* * * * *
2713601 AGAAAAGATTTTCTTGTGACACCAAAGCATCAGTGTCCTGTATCCTAATGAAGGGAATGTG-TTC
1 AGAAAACATTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTT-
* ** * * ** * * * * *
2713665 TTAG-TTCCTAATCTTAAAAAGAATGGAGACTCTTACAAAAATCGATGCCTGTCACAATTAAGGG
65 TT-GCTTCCCAATCTCGAAAAGAGTGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGGG
* *
2713729 ATGAATTTCGATATTAAGGAAAATAAGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCGTCAAT
129 ATGAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCGTCAAT
* * * *
2713794 ATCGTTTATCCTAACGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATAAAAGAAGATCAATA
194 ATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
* *
2713859 CTCGAATCCTCGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGCAAGAAA
259 CTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAA
*
2713924 GCTTTTCTTACG-AACACAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTG
324 GCCTTTCTTACGAAAC-CAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTG
* * *
2713988 CCTAATCATGAAAAGAATGGGGACTAGCATGACAATTCGTGTTTGTCTTATTTACA-AGACAAAC
388 CCTAATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTA-AGAGACAAAC
*
2714052 TTT-CTTCTATCAAAAATC-GTGGAC
452 TTTACTTCTATCAAAAA-CGGTGGAA
* * * * * * * *
2714076 ACAAAACATTTTCTTGGGACACGAAAGCATCAGTGTCCTTTATCCTAATGAAGGGAATATG-TTC
1 AGAAAACATTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTT-
* * ** * * * * *
2714140 TTAG-TTCCCAATCACGAAAAGAATGGAGACGCTTATGGGAATCGATGCTTGTCGTAATTAGGGG
65 TT-GCTTCCCAATCTCGAAAAGAGTGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGGG
* * * * * * *
2714204 ATGAATATTGAAATTAAGGAAAACAAGGCAAAGAAAAGATTTGC-ATGCAAAAGAAAATCATGAC
129 ATGAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTT-CAATGCAAAAGAAAATCGTCAA
* * * *
2714268 TATCGTTTATCCCAATGAGGAGAATGTGTTTATAGTGCCTAATAACAAAAAGAATGAGGATCATT
193 TATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATT
* * *
2714333 ACTAGAATCCTCGTTTGTCTCATTTGAGGCATGAACATAGACTTTGCAAAAATTGGTGGCAAGAA
258 ACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAA
* * * * *
2714398 GGCATTTCTTAC-AAACCCAAAGCATCAATATCATATATCCTTATGATAAGACAAAGTTTATGGT
323 AGCCTTTCTTACGAAA-CCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGT
* * * *
2714462 ACCTAATCATCAAAAGAATGGGGACTAGCATGACAATTCATGTTTGTCTTATTTACA-AGACAAA
387 GCCTAATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTA-AGAGACAAA
* * * *
2714526 TTTTTCTTCTATCAAAAATGGTAGAA
451 CTTTACTTCTATCAAAAACGGTGGAA
*
2714552 AGAAAACATTTTCTTGCGATACCAAAGCTTCAATGTCATGTATCCTAATGAAGGGAATGTGCTTT
1 AGAAAACATTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTT
* * *
2714617 TCCTTCCCAATCTCGAAAATAGTTGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGGGAT
66 TGCTTCCCAATCTCGAAAAGAGTGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGGGAT
* *
2714682 GAATTTTGATATTAAGGAAAATAGTGCAAAGAAAAGATTTCAATGGAAAAGAAAATCGTCAATAT
131 GAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCGTCAATAT
* *
2714747 TGTTTATCCTAATGAGGAGAATGTGTTTATAATGCCTAATCACAAAA-GAATGAAGATCATTACT
196 CGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
* * * * *
2714811 AGAATCCTCGTTTGTCTCATTTGAGGTACGAACTTAAACTTTACAAAATTTGTTGGCAATAAAGC
261 AGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGC
* * * *
2714876 CTTTCTTATGAAACCAAAGCATCAATATCATGTATCCCTATGAGAAGACAAAGTTTATGGTACCT
326 CTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCT
* * * * *
2714941 AATCGTGAAAACAGTGGGGATTGGCATGACAATTCATGTTTGTCTTATTTAAAAGACATACTTTA
391 AATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTTA
2715006 CTTCTATCAAAAACGGTGGAA
456 CTTCTATCAAAAACGGTGGAA
* * * * *
2715027 AGAAAAC-TTTTCTTGCAATTCCAAAGCGTCAATGTCATGTATCCTAATAAAGGGTATGTGCTTT
1 AGAAAACATTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTT
* * * * *
2715091 TGCTTCTCAGTCTTGAAAAGTGCGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGGGAT
66 TGCTTCCCAATCTCGAAAAGAGTGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGGGAT
* * *
2715156 GAATTTTGATATTAAGGAAAACAGTGCAAAGAAAAGATTTCAATGGAAAAGAAAATCGTCAATAT
131 GAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCGTCAATAT
* *
2715221 TGTTTATCCTAATGAGGAGAATGTGTTTATAATGCCTAATCACAAAA-GAATGAAGATCATTACT
196 CGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
* * * * *
2715285 AGAATCCTCGTTTGTCTCATTTGAGGTACGAACTTAAACTTTACAAAATTTGTTGGCAATAAAGC
261 AGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGC
2715350 CTTTCT
326 CTTTCT
2715356 GATGAAAACC
Statistics
Matches: 8652, Mismatches: 1024, Indels: 257
0.87 0.10 0.03
Matches are distributed among these distances:
458 184 0.02
460 4 0.00
461 638 0.07
462 8 0.00
464 6 0.00
465 2 0.00
466 2 0.00
467 236 0.03
470 3 0.00
471 6 0.00
472 6 0.00
473 538 0.06
474 390 0.05
475 2875 0.33
476 3037 0.35
477 710 0.08
478 7 0.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.31
Consensus pattern (476 bp):
AGAAAACATTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTT
TGCTTCCCAATCTCGAAAAGAGTGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGGGAT
GAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCGTCAATAT
CGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
AGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGC
CTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCT
AATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTTA
CTTCTATCAAAAACGGTGGAA
Found at i:2706916 original size:951 final size:950
Alignment explanation
Indices: 2705081--2715355 Score: 13388
Period size: 951 Copynumber: 10.8 Consensus size: 950
2705071 TTTATTTAAG
* * * **
2705081 AGAAAACATTTTCTTGCGACACCAAAGCATCAATGTCAGGTATCTTAATGAAAAGAATGTG-TTC
1 AGAAAACATTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTT-
* * * *
2705145 TTAGC-TCCCAATCTCAAAAAGAATGGAGACTCTTACGAGAATCGATGCTTGTCATATTTAAGGG
65 TT-GCTTCCCAATCTCGAAAAGAGTGGAGACT-TTATGAGAATTGATGCTTGTCATATTTAAGGG
* * *
2705209 ATGAATTTTGATATTAGGGAAAATAGGGCAAAGAAAAGATTTCCACT-CAAAAGAAAATCGTGAA
128 ATGAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTT-CAATGCAAAAGAAAATCGTCAA
* * * *
2705273 GATCGTTTATACTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAACATCATT
192 TATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATT
* * *
2705338 ACT---A-----GTTTGTCTCATTTAAGGCACGAACTTTGATTTTACAAAAATTGGTGGCAAGAA
257 ACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAA
* *
2705395 AGCCTTTCTTACGAAACCAAAACATCAATATCGTGTATCCTTACGAGAAGACAAAGTTTATGGTG
322 AGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTG
*
2705460 CCTAATCATGAAAA-AATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACT
387 CCTAATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACT
** * * * * * * *
2705524 TTTTTTCTATAAAAAACAGTGGAAAGAAAACATTTTCTTGCGATGCCAAAGCATGAATGTTAGGT
452 TTACTTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGATACCAAAGCATCAATGTCATGT
* * ** * *
2705589 ATCCTAATGAAGGAAATGTGTTCTTAGC-TCCCAATCTCAAAAAGAATGGAGACTCTTATGAGAA
517 ATCCTAATGAAGGGAATGTGTT-TT-GCTTCTCAATCTTGAAAAGAGTGGAGACTTTTATGAGAA
* * * * * * *
2705653 TCGATGCTTGTCATAATTAAGCGATGAATTTCGATATTAGGGAAAATAGGGAAAAAAAAAGATTT
580 TTGATGCTTGTCATATTTAAGGGATGAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTT
* * *
2705718 CTATGCAAAAGAAAATCGTGAATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGCGCCTAAT
645 CAATGCAAAAGAAAATCGTCAATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
* *
2705783 CACAAAAGGAATGAAGATCATTACTAGGATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACT
710 CACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACT
*
2705848 TTACAAAAATTGGTGGCAAGAAAGCCTTTGTTACGAAACCAAAGCATCAATATCGTGTATCCTTA
775 TTACAAAAATTGGTGGCAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTA
* * *
2705913 TGAGAAGACAAAGCTTATGGTGCATAATCATGAAAAGAATGGGGATTAGCATGACAATTCATGTT
840 TGAGAAGACAAAGTTTATGGTGCCTAATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTT
*
2705978 TGTCTTATTTAAGAGACAAACTTT-TTTCTATCAAAAACGGTGGAA
905 TGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGTGGAA
* * * * * *
2706023 AGAAAACATTTTCTTGCAACACCAAAGCATCTATGTCAGGTATCTTAATAAAGGGAATGTGCTTT
1 AGAAAACATTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTT
* * *
2706088 TGCTTCCCAATCTCGAAAAGAGTGGAGACTTTCACGAGAATTGATACTTGTCATATTTATGGGAT
66 TGCTTCCCAATCTCGAAAAGAGTGGAGACTTT-ATGAGAATTGATGCTTGTCATATTTAAGGGAT
* * * * *
2706153 GAATTTTGATATTATGTAAAACAGTGCAAAGAAAAGATTTCAATGGAAAAGAAAATCGTCAATAT
130 GAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCGTCAATAT
* * * *
2706218 CGTTTATCCTAATGAGGAGAATGTGATTATAGTGCTTAATCACAAAATGAATGAGGATCTTTACT
195 CGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
*
2706283 AGAATCCTCGTTTGCCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGC
260 AGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGC
* * * *
2706348 CTTTCTTACGAATCCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACAAATTTTATGATGCCT
325 CTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCT
* *
2706413 AATCGTGAAAAGGGA-GGGGATTAGCATGACAATTCATGTTTGCCTTATTTAAGAGACAAACTTT
390 AATCGTGAAAA-GAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTT
* * *
2706477 ACTTCTATCAATAATGGTGGAAAGAAAACCTTTTCTTGCGATTCCAAAGCATCAATGTCATGTAT
454 ACTTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGATACCAAAGCATCAATGTCATGTAT
* *
2706542 CCTAATAAAAGGAATGTGCTTTTGCTTCTCAATCTTGAAAAGAGTGGAGACTTTTATGAGAATTG
519 CCTAATGAAGGGAATGTG-TTTTGCTTCTCAATCTTGAAAAGAGTGGAGACTTTTATGAGAATTG
* *
2706607 ATGATTGTCATATTTAAGGGATGAATTTTGATATTAAGGAAAATAGGGCAAAAAAAAGATTTCAA
583 ATGCTTGTCATATTTAAGGGATGAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAA
* * * * * * * *
2706672 TGAAAAAAAAAATCGTTAGTATCATTCATCCTACTGAGGAGAATGTGTTTATAGTGCCTAATCAA
648 TGCAAAAGAAAATCGTCAATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC
* *
2706737 AAAATGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGGGGCACGAACTTAGACTTTG
713 AAAATGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA
* * * *
2706802 CAGAAATTGGTGGCAAGAAAGCCTTTCCTACGAAACCAAAGCATCAATATTGTGTATCCTTATAA
778 CAAAAATTGGTGGCAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGA
* * * * **
2706867 GAAGACGATGTTTATGCTGCCTAATCGTGAAAAGAATGGGGACTAGCATGAGTATT-ATTGTTTG
843 GAAGACAAAGTTTATGGTGCCTAATCGTGAAAAGAATGGGGATTAGCATGACAATTCA-TGTTTG
* * * * *
2706931 TCTTATTTAGGTGATAAACTTTACTTCTATAAAAAACAGTGGGAA
907 TCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGT-GGAA
* * * * *
2706976 GGAAATC-TTTTCTTGCGATACCATAGCATCAATGTCTTGTATCCTGATGAAGGGAATGTG-TTC
1 AGAAAACATTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTT-
* * *
2707039 TTAG-TTCCAAATCTCGAAAAGATTGGAGACTCTTA-GAAGAATCT-ATGCTTGTCATAATTAAG
65 TT-GCTTCCCAATCTCGAAAAGAGTGGAGACT-TTATG-AGAAT-TGATGCTTGTCATATTTAAG
* * *
2707101 GGATGAATTTCGATATTAAGGAAAATAAGGCAAAGAAAAGTTTTCAATGCAAAAGAAAAATCGTC
126 GGATGAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAG-AAAATCGTC
*
2707166 AATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCAAATCACAAAATGGAA-GAAGATC
190 AATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAT-GAATGAAGATC
* * * * * *
2707230 ATTACTGGAATCCTCATTTGCCTCATTTGAGCCACGAACTTCGACTTTACAAAAATTAGTGGCAA
254 ATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAA
* * * * * *
2707295 TAAAGCTTTTCTTACAAAACCAACGCATCAATATCGTGTATCCCTATGAGAAGACAAATTTTATG
319 GAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATG
* * * * * * *
2707360 GTGCCTAATCGTGAAAAGAGTGGGGATTGGCATGACAATTCGTGTTTATCTTATTTAAGAAATAT
384 GTGCCTAATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAA
* * * * *
2707425 ACTTTATTTCTATCAAAAACGATGGAAAGAAAA-CTTTTGTTGCGATTCCAAAGCGTCAATGTCA
449 ACTTTACTTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGATACCAAAGCATCAATGTCA
* * *
2707489 TGTATCCTAATAAAGGGCATGTGCTTTTGCTTCTCAATCTTGAAAAGAGCGGAGACTTTTATGAG
514 TGTATCCTAATGAAGGGAATGTG-TTTTGCTTCTCAATCTTGAAAAGAGTGGAGACTTTTATGAG
* *
2707554 AATTGATGATTGTCTTATTTAAGGGATGAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGAT
578 AATTGATGCTTGTCATATTTAAGGGATGAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGAT
* * * *
2707619 TTCAAT--AAAAAAAAATCGTTAATATCATTTATCCTACTGAGGAGAATGTGTTTATAGTGCCTA
643 TTCAATGCAAAAGAAAATCGTCAATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
*
2707682 ATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAGCTTAGA
708 ATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGA
* * * *
2707747 CTTTGCAGAAATTGGTGGCAAGAAAGCCTTTCTTATGAAACCAAAGCATCGATATCGTGTATCCT
773 CTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCT
* * *
2707812 TATGAGAAGACAACGTTTATGGTGCCTAATCGTGAAAAGAGTGGGGATTAGCCTGACAATTCATG
838 TATGAGAAGACAAAGTTTATGGTGCCTAATCGTGAAAAGAATGGGGATTAGCATGACAATTCATG
* *
2707877 TTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAATGGTAGAA
903 TTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGTGGAA
*
2707925 AGAAAACCTTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCT-AT--------T-TGC--T
1 AGAAAACATTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTT
* * * * * * * *
2707978 T--AT--CAATCTTGAAAAGGGTGGGGACTTTTTTGAGAATTGATGCTTGTCGTATTTAAGGCAC
66 TGCTTCCCAATCTCGAAAAGAGTGGAGAC-TTTATGAGAATTGATGCTTGTCATATTTAAGGGAT
* * * * *
2708039 GAATTTTGATATTAAGGAAAACAGGGCAAAGAAAAGATTTCAAGGGAAAAATAAAATCGTTAATA
130 GAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAA-TGCAAAAGAAAATCGTCAATA
* * *
2708104 TCGTTTATCCTAAAGAGGATAATGTGTTTATAGTCCCTAATCACAAAATGAATGAAGATCATTAC
194 TCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
* * *
2708169 TAGAATCCTCGTTTGTCTCATTTGAGGCATGAATTTAGACTTTACAAAAGTTGGTGGCAAGAAAG
259 TAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAG
* *
2708234 CCTTTCTTACGAAACCAAAGCATCAATATCGTGAATCCTTATGAGAAGACAAAGTTTGTGGTGCC
324 CCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCC
* * *
2708299 TAGTCGTGAAAAGAGTGGGGATTGGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTT
389 TAATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTT
* * * *
2708364 ACTTCTATCAAAAATGGTGGAAAGAAAAACTTTTCTTGCCATTCCAAA-CTATCAATGTCATGTA
454 ACTTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGATACCAAAGC-ATCAATGTCATGTA
** * * * *
2708428 TCCTAATGAATTGAATGTGCTTTTGCTTTTCAATCTTGGAAAGAGCGGAGACTTTTATAAGAATT
518 TCCTAATGAAGGGAATGTG-TTTTGCTTCTCAATCTTGAAAAGAGTGGAGACTTTTATGAGAATT
*
2708493 GATGCTTGTCATATTTAAGGGATGAATTTTGATATTAAGGAAAACAGGGCAAAGAAAAGATTTCA
582 GATGCTTGTCATATTTAAGGGATGAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCA
* * * * * *
2708558 ATGGAAAAGAAAATCGTTATTATCATTTATCCTATTGAGGAGAATGTGTTTATAGTGCCTTATCA
647 ATGCAAAAGAAAATCGTCAATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* *
2708623 CAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGTATGAACTTAGACTTT
712 CAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
* * * * *
2708688 ACAAAAATTGGTGGTAAGAAAGCCATTCTTACGAAACCAAAGCATCAATATCCTGTATTCTTCTG
777 ACAAAAATTGGTGGCAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATG
* * * * * *
2708753 AGAAGACAATGTTTATGGTGCCTAATTGTGAAAAGAATGGGGACTAGCGTGACTATTCTTGTTTG
842 AGAAGACAAAGTTTATGGTGCCTAATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTG
* * * *
2708818 TCCTATCTAACAGACAAACTTTACTTCAATCAAAAACGGTGGAA
907 TCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGTGGAA
* *
2708862 AGAAAACTTTTTCTTGC-AGCACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TT
1 AGAAAACATTTTCTTGCGA-TACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTT
* * * * * * *
2708925 CTTAGC-TCCCAATCTCGGAAAGAATGGAGACTCTTACGAGAATCGATGCTTATCGTAATTAAGG
65 -TT-GCTTCCCAATCTCGAAAAGAGTGGAGACT-TTATGAGAATTGATGCTTGTCATATTTAAGG
* * * * *
2708989 GATGAATTTTGAAATTAATGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATGAA
127 GATGAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCGTCAA
* *
2709054 TATCGTTGATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATT
192 TATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATT
* * **
2709119 ACTAGAATCCTCGTTTGTCTCATTTAAGGCATGAACTTAGACTTTAC-AAAATTGGTAACAAGAA
257 ACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAA
* * * * *
2709183 AGCCTTTCCTGCGAAACCAAAGCATCAATATCATCTATCCTTATGAGAAGAGAAAGTTTATGGTG
322 AGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTG
* *
2709248 CCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTTTTTAAGAGACAAACT
387 CCTAATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACT
* ** * * * *
2709313 TTACTTCTATCAAAAACGGTGGGAAGAAAAGATTTTCTTGTGACACCAAAGCATCAGTGTCCTGT
452 TTACTTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGATACCAAAGCATCAATGTCATGT
* * * ** *
2709378 ATCCTAATGAAGGGAATGTGTTCTTAG-TTC-CTAATCTTAAAAAGAATGGAGACTCTTACAAAA
517 ATCCTAATGAAGGGAATGTGTT-TT-GCTTCTC-AATCTTGAAAAGAGTGGAGACTTTTATGAGA
* * * * * *
2709441 ATCGATGCCTGTCACAATTAAGGGATGAATTTCGATATTAAGGAAAATAAGGCAAAGAAAAGATT
579 ATTGATGCTTGTCATATTTAAGGGATGAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATT
*
2709506 TCAATGCAAAAGAAAATCGTCAATATCGTTTATCCTAACGAGGAGAATGTGTTTATAGTGCCTAA
644 TCAATGCAAAAGAAAATCGTCAATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
* * * * *
2709571 TCACAAAATAAAAGAAGATCAATACTCGAATCCTCGTTTGTCTCATTTGAGGCATGAACTTAGAC
709 TCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGAC
*
2709636 TTTACAAAAATTGGTGGCAAGAAAGCTTTTCTTACG-AACACAAAGCATCAATATCGTGTATCCT
774 TTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTACGAAAC-CAAAGCATCAATATCGTGTATCCT
* * *
2709700 TATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGACTAGCATGACAATTCGTG
838 TATGAGAAGACAAAGTTTATGGTGCCTAATCGTGAAAAGAATGGGGATTAGCATGACAATTCATG
*
2709765 TTTGTCTTATTTACA-AGACAAACTTT-CTTCTATCAAAAATC-GTGGAC
903 TTTGTCTTATTTA-AGAGACAAACTTTACTTCTATCAAAAA-CGGTGGAA
* * * * * * * *
2709812 ACAAAACATTTTCTTGGGACACGAAAGCATCAGTGTCCTTTATCCTAATGAAGGGAATATG-TTC
1 AGAAAACATTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTT-
* * * * * * * *
2709876 TTAG-TTCCCAATCACGAAAAGAATGGAGACGCTTATGGGAATCGATGCTTGTCGTAATTAGGGG
65 TT-GCTTCCCAATCTCGAAAAGAGTGGAGAC-TTTATGAGAATTGATGCTTGTCATATTTAAGGG
* * * * * * *
2709940 ATGAATATTGAAATTAAGGAAAACAAGGCAAAGAAAAGATTTGC-ATGCAAAAGAAAATCATGAC
128 ATGAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTT-CAATGCAAAAGAAAATCGTCAA
* * * *
2710004 TATCGTTTATCCCAATGAGGAGAATGTGTTTATAGTGCCTAATAACAAAAAGAATGAGGATCATT
192 TATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATT
* * *
2710069 ACTAGAATCCTCGTTTGTCTCATTTGAGGCATGAACATAGACTTTGCAAAAATTGGTGGCAAGAA
257 ACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAA
* * * * *
2710134 GGCATTTCTTAC-AAACCCAAAGCATCAATATCATATATCCTTATGATAAGACAAAGTTTATGGT
322 AGCCTTTCTTACGAAA-CCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGT
* * * *
2710198 ACCTAATCATCAAAAGAATGGGGACTAGCATGACAATTCATGTTTGTCTTATTTACA-AGACAAA
386 GCCTAATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTA-AGAGACAAA
* * * * * *
2710262 TTTTTCTTCTATCAAAAATGGTAGAAAGAAAACATTTTCTTGCGATACCAAAGCTTCAATGTCAT
450 CTTTACTTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGATACCAAAGCATCAATGTCAT
* * * * *
2710327 GTATCCTAATGAAGGGAATGTGCTTTTCCTTCCCAATCTCGAAAATAGTTGAGACTTTTATGAGA
515 GTATCCTAATGAAGGGAATGTG-TTTTGCTTCTCAATCTTGAAAAGAGTGGAGACTTTTATGAGA
*
2710392 ATTGATGCTTGTCATATTTAAGGGATGAATTTTGATATTAAGGAAAATAGTGCAAAGAAAAGATT
579 ATTGATGCTTGTCATATTTAAGGGATGAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATT
* * *
2710457 TCAATGGAAAAGAAAATCGTCAATATTGTTTATCCTAATGAGGAGAATGTGTTTATAATGCCTAA
644 TCAATGCAAAAGAAAATCGTCAATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
* *
2710522 TCACAAAA-GAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGTACGAACTTAAAC
709 TCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGAC
* * * * * *
2710586 TTTACAAAATTTGTTGGCAATAAAGCCTTTCTTATGAAACCAAAGCATCAATATCATGTATCCCT
774 TTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTT
* * * * *
2710651 ATGAGAAGACAAAGTTTATGGTACCTAATCGTGAAAACAGTGGGGATTGGCATGACAATTCATCT
839 ATGAGAAGACAAAGTTTATGGTGCCTAATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGT
* *
2710716 TTGTCTTATTTAAGAGACAAACTTTACTTCTATCAATAATGGTGGAA
904 TTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGTGGAA
* * * *
2710763 AGAAAACCTTTTCTTGCGATTCCAAAGCATCAATGTCATGTATCCTAATAAAAGGAATGTGCTTT
1 AGAAAACATTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTT
* * *
2710828 TGCTTCTCAATCTTGAAAAGAGTGGAGACTTTTATGAGAATTGATGATTGTCATATTTAAGGGAT
66 TGCTTCCCAATCTCGAAAAGAGTGGAGAC-TTTATGAGAATTGATGCTTGTCATATTTAAGGGAT
* * * * *
2710893 GAATTTTGATATTAAGGAAAATAGGGCAAAAAAAAGATTTCAATGAAAAAAAAAATCGTTAGTAT
130 GAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCGTCAATAT
* * * *
2710958 CATTCATCCTACTGAGGAGAATGTGTTTATAGTGCCTAATCAAAAAATGAATGAAGATCATTACT
195 CGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
* * *
2711023 AGAATCCTCGTTTGTCTCATTTGGGGCACGAACTTAGACTTTGCAGAAATTGGTGGCAAGAAAGC
260 AGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGC
* * * * * *
2711088 CTTTCCTACGAAACCAAAGCATCAATATTGTGTATCCTTATAAGAAGACGATGTTTATGCTGCCT
325 CTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCT
* ** * * *
2711153 AATCGTGAAAAGAATGGGGACTAGCATGAGTATT-ATTGTTTGTCTTATTTAGGTGATAAACTTT
390 AATCGTGAAAAGAATGGGGATTAGCATGACAATTCA-TGTTTGTCTTATTTAAGAGACAAACTTT
* * * * * * * *
2711217 ACTTCTATAAAAAACAGCGGGAAGGAAATCTTTTCTTGCGATACCATAGCATCAATGTCTTGTAT
454 ACTTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGATACCAAAGCATCAATGTCATGTAT
* * * *
2711282 CCTGATGAAGGGAATGTGTTCTTAG-TTC-CAAATCTCGAAAAGATTGGAGACTCTTA-GAAGAA
519 CCTAATGAAGGGAATGTGTT-TT-GCTTCTC-AATCTTGAAAAGAGTGGAGACTTTTATG-AGAA
* * * *
2711344 TCT-ATGCTTGTCATAATTAAGGGATGAATTTCGATATTAAGGAAAATAAGGCAAAGAAAAGTTT
580 T-TGATGCTTGTCATATTTAAGGGATGAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATT
*
2711408 TCAATGCAAAAGAAAAATCGTCAATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCAA
644 TCAATGCAAAAG-AAAATCGTCAATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * * * *
2711473 ATCACAAAATGGAA-GAAGATCATTACTGGAATCCTCATTTGCCTCATTTGAGCCACGAACTTCG
708 ATCACAAAAT-GAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAG
* * * * *
2711537 ACTTTACAAAAATTAGTGGCAATAAAGCTTTTCTTACAAAACCAACGCATCAATATCGTGTATCC
772 ACTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCC
* * * * *
2711602 CTATGAGAAGACAAATTTTATGGTGCCTAATCGTGAAAAGAGTGGGGATTGGCATGACAATTCGT
837 TTATGAGAAGACAAAGTTTATGGTGCCTAATCGTGAAAAGAATGGGGATTAGCATGACAATTCAT
* * * * * *
2711667 GTTTATCTTATTTAAGAAATATACTTTATTTCTATCAAAAACGATGGAA
902 GTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGTGGAA
* * * * *
2711716 AGAAAAC-TTTTGTTGCGATTCCAAAGCGTCAATGTCATGTATCCTAATAAAGGGCATGTGCTTT
1 AGAAAACATTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTT
* * * * *
2711780 TGCTTCTCAATCTTGAAAAGAGCGGAGACTTTTATGAGAATTGATGATTGTCTTATTTAAGGGAT
66 TGCTTCCCAATCTCGAAAAGAGTGGAGAC-TTTATGAGAATTGATGCTTGTCATATTTAAGGGAT
* *
2711845 GAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAAT--AAAAAAAAATCGTTAATAT
130 GAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCGTCAATAT
* *
2711908 CATTTATCCTACTGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
195 CGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
* * *
2711973 AGAATCCTCGTTTGTCTCATTTGAGGCACGAGCTTAGACTTTGCAGAAATTGGTGGCAAGAAAGC
260 AGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGC
* * *
2712038 CTTTCTTATGAAACCAAAGCATCGATATCGTGTATCCTTATGAGAAGACAACGTTTATGGTGCCT
325 CTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCT
* *
2712103 AATCGTGAAAAGAGTGGGGATTAGCCTGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTTA
390 AATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTTA
* *
2712168 CTTCTATCAAAAATGGTAGAAAGAAAACCTTTTCTTGCGATACCAAAGCATCAATGTCATGTATC
455 CTTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGATACCAAAGCATCAATGTCATGTATC
* * * *
2712233 C---T-------A-----TTTGCTTATCAATCTTGAAAAGGGTGGGGACTTTTTTGAGAATTGAT
520 CTAATGAAGGGAATGTGTTTTGCTTCTCAATCTTGAAAAGAGTGGAGACTTTTATGAGAATTGAT
* * * * *
2712283 GCTTGTCGTATTTAAGGCACGAATTTTGATATTAAGGAAAACAGGGCAAAGAAAAGATTTCAAGG
585 GCTTGTCATATTTAAGGGATGAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAA-T
* * * * *
2712348 GAAAAAGAAAATCGTTAATATCGTTTATCCTAAAGAGGATAATGTGTTTATAGTCCCTAATCACA
649 GCAAAAGAAAATCGTCAATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACA
* *
2712413 AAATGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCATGAATTTAGACTTTAC
714 AAATGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC
* *
2712478 AAAAGTTGGTGGCAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGAATCCTTATGAG
779 AAAAATTGGTGGCAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAG
* * * *
2712543 AAGACAAAGTTTGTGGTGCCTAGTCGTGAAAAGAGTGGGGATTGGCATGACAATTCATGTTTGTC
844 AAGACAAAGTTTATGGTGCCTAATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTC
*
2712608 TTATTTAAGAGACAAACTTTACTTCTATCAAAAATGGTGGAA
909 TTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGTGGAA
* * **
2712650 AGAAAA-ACTTTTCTTGCCATTCCAAA-CTATCAATGTCATGTATCCTAATGAATTGAATGTGCT
1 AGAAAACA-TTTTCTTGCGATACCAAAGC-ATCAATGTCATGTATCCTAATGAAGGGAATGTGCT
** * * * *
2712713 TTTGCTTTTCAATCTTGGAAAGAGCGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGG
64 TTTGCTTCCCAATCTCGAAAAGAGTGGAGAC-TTTATGAGAATTGATGCTTGTCATATTTAAGGG
* * * *
2712778 ATGAATTTTGATATTAAGGAAAACAGGGCAAAGAAAAGATTTCAATGGAAAAGAAAATCGTTATT
128 ATGAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCGTCAAT
* * *
2712843 ATCATTTATCCTATTGAGGAGAATGTGTTTATAGTGCCTTATCACAAAATGAATGAAGATCATTA
193 ATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
* * *
2712908 CTAGAATCCTCGTTTGTCTCATTTGAGGTATGAACTTAGACTTTACAAAAATTGGTGGTAAGAAA
258 CTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAA
* * * * *
2712973 GCCATTCTTACGAAACCAAAGCATCAATATCCTGTATTCTTCTGAGAAGACAATGTTTATGGTGC
323 GCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTGC
* * * * * * * *
2713038 CTAATTGTGAAAAGAATGGGGACTAGCGTGACTATTCTTGTTTGTCCTATCTAACAGACAAACTT
388 CTAATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTT
* * *
2713103 TACTTCAATCAAAAACGGTGGAAAGAAAACTTTTTCTTGC-AGCACCAAAGCATCAATGTCATGT
453 TACTTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGA-TACCAAAGCATCAATGTCATGT
* * * * * *
2713167 ATCCTAATGAAGGGAATGTGTTCTTAGC-TCCCAATCTCGGAAAGAATGGAGACTCTTACGAGAA
517 ATCCTAATGAAGGGAATGTGTT-TT-GCTTCTCAATCTTGAAAAGAGTGGAGACTTTTATGAGAA
* * * * * *
2713231 TCGATGCTTATCGTAATTAAGGGATGAATTTTGAAATTAATGAAAATAGGGCAAAGAAAAGATTT
580 TTGATGCTTGTCATATTTAAGGGATGAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTT
* * * *
2713296 CCATGCAAAAGAAAATCATGAATATCGTTGATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
645 CAATGCAAAAGAAAATCGTCAATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
* * *
2713361 CACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTAAGGCATGAACTTAGACT
710 CACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACT
** * * *
2713426 TTAC-AAAATTGGTAACAAGAAAGCCTTTCTTATGAAACCAAAGCATCAATATCATCTATCCTTA
775 TTACAAAAATTGGTGGCAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTA
* * *
2713490 TGAGAAGAGAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGATAATTCATGTT
840 TGAGAAGACAAAGTTTATGGTGCCTAATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTT
* *
2713555 TGTCTTTTTTAAGAGACAAACTTTACTTCTATCAAAAACGGTGGGA
905 TGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGTGGAA
* * * * *
2713601 AGAAAAGATTTTCTTGTGACACCAAAGCATCAGTGTCCTGTATCCTAATGAAGGGAATGTG-TTC
1 AGAAAACATTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTT-
* ** * ** * * * * *
2713665 TTAG-TTCCTAATCTTAAAAAGAATGGAGACTCTTACAAAAATCGATGCCTGTCACAATTAAGGG
65 TT-GCTTCCCAATCTCGAAAAGAGTGGAGACT-TTATGAGAATTGATGCTTGTCATATTTAAGGG
* *
2713729 ATGAATTTCGATATTAAGGAAAATAAGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCGTCAAT
128 ATGAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCGTCAAT
* * * *
2713794 ATCGTTTATCCTAACGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATAAAAGAAGATCAATA
193 ATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
* *
2713859 CTCGAATCCTCGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGCAAGAAA
258 CTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAA
*
2713924 GCTTTTCTTACG-AACACAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTG
323 GCCTTTCTTACGAAAC-CAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTG
* * *
2713988 CCTAATCATGAAAAGAATGGGGACTAGCATGACAATTCGTGTTTGTCTTATTTACA-AGACAAAC
387 CCTAATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTA-AGAGACAAAC
* * * * * * * *
2714052 TTT-CTTCTATCAAAAATC-GTGGACACAAAACATTTTCTTGGGACACGAAAGCATCAGTGTCCT
451 TTTACTTCTATCAAAAA-CGGTGGAAAGAAAACCTTTTCTTGCGATACCAAAGCATCAATGTCAT
* * * ** * ** *
2714115 TTATCCTAATGAAGGGAATATGTTCTTAG-TTCCCAATCACGAAAAGAATGGAGACGCTTATGGG
515 GTATCCTAATGAAGGGAATGTGTT-TT-GCTTCTCAATCTTGAAAAGAGTGGAGACTTTTATGAG
* * * * * * * *
2714179 AATCGATGCTTGTCGTAATTAGGGGATGAATATTGAAATTAAGGAAAACAAGGCAAAGAAAAGAT
578 AATTGATGCTTGTCATATTTAAGGGATGAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGAT
* * * *
2714244 TTGC-ATGCAAAAGAAAATCATGACTATCGTTTATCCCAATGAGGAGAATGTGTTTATAGTGCCT
643 TT-CAATGCAAAAGAAAATCGTCAATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
* * * * *
2714308 AATAACAAAAAGAATGAGGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCATGAACATAG
707 AATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAG
* * * * *
2714373 ACTTTGCAAAAATTGGTGGCAAGAAGGCATTTCTTAC-AAACCCAAAGCATCAATATCATATATC
772 ACTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTACGAAA-CCAAAGCATCAATATCGTGTATC
* * * * *
2714437 CTTATGATAAGACAAAGTTTATGGTACCTAATCATCAAAAGAATGGGGACTAGCATGACAATTCA
836 CTTATGAGAAGACAAAGTTTATGGTGCCTAATCGTGAAAAGAATGGGGATTAGCATGACAATTCA
* * * *
2714502 TGTTTGTCTTATTTACA-AGACAAATTTTTCTTCTATCAAAAATGGTAGAA
901 TGTTTGTCTTATTTA-AGAGACAAACTTTACTTCTATCAAAAACGGTGGAA
*
2714552 AGAAAACATTTTCTTGCGATACCAAAGCTTCAATGTCATGTATCCTAATGAAGGGAATGTGCTTT
1 AGAAAACATTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTT
* * *
2714617 TCCTTCCCAATCTCGAAAATAGTTGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGGGAT
66 TGCTTCCCAATCTCGAAAAGAGTGGAGAC-TTTATGAGAATTGATGCTTGTCATATTTAAGGGAT
* *
2714682 GAATTTTGATATTAAGGAAAATAGTGCAAAGAAAAGATTTCAATGGAAAAGAAAATCGTCAATAT
130 GAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCGTCAATAT
* *
2714747 TGTTTATCCTAATGAGGAGAATGTGTTTATAATGCCTAATCACAAAA-GAATGAAGATCATTACT
195 CGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
* * * * *
2714811 AGAATCCTCGTTTGTCTCATTTGAGGTACGAACTTAAACTTTACAAAATTTGTTGGCAATAAAGC
260 AGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGC
* * * *
2714876 CTTTCTTATGAAACCAAAGCATCAATATCATGTATCCCTATGAGAAGACAAAGTTTATGGTACCT
325 CTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCT
* * * * *
2714941 AATCGTGAAAACAGTGGGGATTGGCATGACAATTCATGTTTGTCTTATTTAAAAGACATACTTTA
390 AATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTTA
* * *
2715006 CTTCTATCAAAAACGGTGGAAAGAAAA-CTTTTCTTGCAATTCCAAAGCGTCAATGTCATGTATC
455 CTTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGATACCAAAGCATCAATGTCATGTATC
* * * * *
2715070 CTAATAAAGGGTATGTGCTTTTGCTTCTCAGTCTTGAAAAGTGCGGAGACTTTTATGAGAATTGA
520 CTAATGAAGGGAATGTG-TTTTGCTTCTCAATCTTGAAAAGAGTGGAGACTTTTATGAGAATTGA
* *
2715135 TGCTTGTCATATTTAAGGGATGAATTTTGATATTAAGGAAAACAGTGCAAAGAAAAGATTTCAAT
584 TGCTTGTCATATTTAAGGGATGAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAAT
* * *
2715200 GGAAAAGAAAATCGTCAATATTGTTTATCCTAATGAGGAGAATGTGTTTATAATGCCTAATCACA
649 GCAAAAGAAAATCGTCAATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACA
* *
2715265 AAA-GAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGTACGAACTTAAACTTTAC
714 AAATGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC
* * *
2715329 AAAATTTGTTGGCAATAAAGCCTTTCT
779 AAAAATTGGTGGCAAGAAAGCCTTTCT
2715356 GATGAAAACC
Statistics
Matches: 8211, Mismatches: 974, Indels: 289
0.87 0.10 0.03
Matches are distributed among these distances:
933 9 0.00
934 701 0.09
935 319 0.04
936 3 0.00
937 625 0.08
938 4 0.00
940 4 0.00
941 8 0.00
942 222 0.03
943 2 0.00
945 1 0.00
946 1 0.00
947 4 0.00
949 93 0.01
950 1900 0.23
951 2856 0.35
952 796 0.10
953 655 0.08
954 8 0.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.31
Consensus pattern (950 bp):
AGAAAACATTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTT
TGCTTCCCAATCTCGAAAAGAGTGGAGACTTTATGAGAATTGATGCTTGTCATATTTAAGGGATG
AATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCGTCAATATC
GTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
GAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCC
TTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTA
ATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTTAC
TTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGATACCAAAGCATCAATGTCATGTATCC
TAATGAAGGGAATGTGTTTTGCTTCTCAATCTTGAAAAGAGTGGAGACTTTTATGAGAATTGATG
CTTGTCATATTTAAGGGATGAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGC
AAAAGAAAATCGTCAATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAA
ATGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAA
AAATTGGTGGCAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAA
GACAAAGTTTATGGTGCCTAATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTT
ATTTAAGAGACAAACTTTACTTCTATCAAAAACGGTGGAA
Found at i:2709236 original size:159 final size:161
Alignment explanation
Indices: 2708100--2714923 Score: 772
Period size: 159 Copynumber: 43.2 Consensus size: 161
2708090 TAAAATCGTT
* * * * * *
2708100 AATATCGTTTATCCTAA--AGAGGATAATGTGTTTATAGTCCCTAATCACAAAATGAATGAAGA-
1 AATATCGTGTATCCTAATGAGAAGAGAATGTGTTTATAGTGCCTAATCATAAAAAGAATGAAGAC
* * * *
2708162 TCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCATGAATTTAGACTTTA-CAAAAGTTGGTGG
66 TCATTACTAGAATCAT-GTTTGTCTCATTTAAGGCATGAACTTAGACTTTAGCAAAA-TTGGTGA
* *
2708226 CAAG-AAAGCCTTTCTTACGAAACCAAAGCATC
129 CAAGAAAAGCTTTTCTTGCGAAACCAAAGCATC
* * * * * * * * * * ** *
2708258 AATATCGTGAATCCTTATGAGAAGACAA--AGTTTGTGGTGCCTAGTCGTGAAAAGAGTGGGGAT
1 AATATCGTGTATCCTAATGAGAAGAGAATGTGTTTATAGTGCCTAATCATAAAAAGAATGAAGAC
* * * * * *
2708321 TGGCATGAC-A-ATTCATGTTTGTCTTATTTAAGAGACA--AACTT-TACTTCTATCAAAAATGG
66 T--CATTACTAGAATCATGTTTGTCTCATTTAAG-G-CATGAACTTAGACTT-TAGCAAAATTGG
* * **
2708381 TGGA-AAGAAAAACTTTTCTTGCCATTCCAAA-CTATC
126 T-GACAAGAAAAGCTTTTCTTGCGAAACCAAAGC-ATC
* * ** ** * ** ** *
2708417 AATGTCATGTATCCTAAT--GAATTGAATGTGCTTT-T-GCT-TTTCAATCTTGGAAAGAGCGGA
1 AATATCGTGTATCCTAATGAGAAGAGAATGTG-TTTATAG-TGCCT-AATCATAAAAAGAATGAA
* * * * * * * *
2708477 GACT-TTTA-TAAGAATTGATGCTTGTCAT-ATTTAAGGGATGAATTTTGA-TATTAAGGAAAAC
63 GACTCATTACT-AGAA-TCATGTTTGTC-TCATTTAAGGCATGAACTTAGACT-TT-AGCAAAAT
* * * ** * * *
2708538 AGG-G-CAAAGAAAAG-ATTTCAATG-GAAAAGAAAATCGTT
123 TGGTGAC-AAGAAAAGCTTTTC-TTGCG-AAACCAAAGCATC
* * * * * * *
2708576 ATTATCATTTATCCTATTGAG--GAGAATGTGTTTATAGTGCCTTATCACAAAATGAATGAAGA-
1 AATATCGTGTATCCTAATGAGAAGAGAATGTGTTTATAGTGCCTAATCATAAAAAGAATGAAGAC
* * * *
2708638 TCATTACTAGAATCCTCGTTTGTCTCATTTGAGGTATGAACTTAGACTTTA-CAAAAATTGGTGG
66 TCATTACTAGAATCAT-GTTTGTCTCATTTAAGGCATGAACTTAGACTTTAGC-AAAATTGGTGA
* ** *
2708702 TAAG-AAAGCCATTCTTACGAAACCAAAGCATC
129 CAAGAAAAGCTTTTCTTGCGAAACCAAAGCATC
* * ** * * ** * **
2708734 AATATCCTGTATTCTTCTGAGAAGACAA--TGTTTATGGTGCCTAATTGTGAAAAGAATGGGGAC
1 AATATCGTGTATCCTAATGAGAAGAGAATGTGTTTATAGTGCCTAATCATAAAAAGAATGAAGAC
* * * * * * * * * **
2708797 TAGCGTGACT--ATTCTTGTTTGTC-CTATCTAACAGACA--AACTT-TACTTCAATCAAAAACG
66 T--CATTACTAGAATCATGTTTGTCTC-AT-TTA-AGGCATGAACTTAGACTT-TAGCAAAATTG
*
2708856 GTGGA-AAGAAAA-CTTTTTCTTGC-AGCACCAAAGCATC
125 GT-GACAAGAAAAGC-TTTTCTTGCGA-AACCAAAGCATC
* * * * ** *
2708893 AATGTCATGTATCCTAAT--GAAGGGAATGTGTTCT-TAGCT-CCCAATC-TCGGAAAGAATGGA
1 AATATCGTGTATCCTAATGAGAAGAGAATGTGTT-TATAG-TGCCTAATCAT-AAAAAGAATGAA
* * * * * * * * * *
2708953 GACTC-TTACGAGAATCGATGCTTATCGT-AATTAAGGGATGAATTTTGAAATTAATG-AAAATA
63 GACTCATTACTAGAATC-ATGTTTGTC-TCATTTAAGGCATGAACTTAG-ACTTTA-GCAAAATT
* * * * ** * *
2709015 GG-G-CAAAGAAAAGATTTCCATGCAAAAGAAAATCATG
124 GGTGAC-AAGAAAAGCTTTTCTTGCGAAACCAAAGCATC
*
2709052 AATATCGT-TGATCCTAATGAG--GAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGA
1 AATATCGTGT-ATCCTAATGAGAAGAGAATGTGTTTATAGTGCCTAATCATAAAAAGAATGAAGA
* *
2709114 -TCATTACTAGAATCCTCGTTTGTCTCATTTAAGGCATGAACTTAGACTTTA-CAAAATTGGTAA
65 CTCATTACTAGAATCAT-GTTTGTCTCATTTAAGGCATGAACTTAGACTTTAGCAAAATTGGTGA
* *
2709177 CAAG-AAAGCCTTTCCTGCGAAACCAAAGCATC
129 CAAGAAAAGCTTTTCTTGCGAAACCAAAGCATC
* * * * * * ** *
2709209 AATATCATCTATCCTTATGAGAAGAGAA--AGTTTATGGTGCCTAATCATGAAAAGAATGGGGAT
1 AATATCGTGTATCCTAATGAGAAGAGAATGTGTTTATAGTGCCTAATCATAAAAAGAATGAAGAC
* * ** * * **
2709272 TAGCATGAC-A-ATTCATGTTTGTCTTTTTTAAGAGACA--AACTT-TACTTCTATCAAAAACGG
66 T--CATTACTAGAATCATGTTTGTCTCATTTAAG-G-CATGAACTTAGACTT-TAGCAAAATTGG
** * * *
2709332 TGGGAAGAAAAGATTTTCTTGTGACACCAAAGCATC
126 TGACAAGAAAAGCTTTTCTTGCGAAACCAAAGCATC
* * * * * * *
2709368 AGTGTCCTGTATCCTAAT--GAAGGGAATGTGTTCT-TAGTTCCTAATCTTAAAAAGAATGGAGA
1 AATATCGTGTATCCTAATGAGAAGAGAATGTGTT-TATAGTGCCTAATCATAAAAAGAATGAAGA
* * ** * * * * * * **
2709430 CTC-TTACAAAAATCGATGCCTGTCACAATTAAGGGATGAATTTCGA-TATTAAGGAAAATAAG-
65 CTCATTACTAGAATC-ATGTTTGTCTCATTTAAGGCATGAACTTAGACT-TT-AGCAAAATTGGT
* * * ** * *
2709492 G-CAAAGAAAAG-ATTTCAATGCAAAAGAAAATCGTC
127 GAC-AAGAAAAGCTTTTC-TTGCGAAACCAAAGCATC
* * * *
2709527 AATATCGTTTATCCTAACGAG--GAGAATGTGTTTATAGTGCCTAATCACAAAATA-AAAGAAGA
1 AATATCGTGTATCCTAATGAGAAGAGAATGTGTTTATAGTGCCTAATCATAAAA-AGAATGAAGA
* * * *
2709589 -TCAATACTCGAATCCTCGTTTGTCTCATTTGAGGCATGAACTTAGACTTTA-CAAAAATTGGTG
65 CTCATTACTAGAATCAT-GTTTGTCTCATTTAAGGCATGAACTTAGACTTTAGC-AAAATTGGTG
* *
2709652 GCAAG-AAAGCTTTTCTTACG-AACACAAAGCATC
128 ACAAGAAAAGCTTTTCTTGCGAAAC-CAAAGCATC
* * * * * **
2709685 AATATCGTGTATCCTTATGAGAAGACAA--AGTTTATGGTGCCTAATCATGAAAAGAATGGGGAC
1 AATATCGTGTATCCTAATGAGAAGAGAATGTGTTTATAGTGCCTAATCATAAAAAGAATGAAGAC
* * * * * * * * *
2709748 TAGCATGAC-A-ATTCGTGTTTGTCTTATTTACAAGACA--AACTT--TCTTCTATCAAAAATCG
66 T--CATTACTAGAATCATGTTTGTCTCATTT--AAGGCATGAACTTAGACTT-TAGCAAAATTGG
* * * *
2709807 TGGAC-ACAAAA-CATTTTCTTGGGACACGAAAGCATC
126 T-GACAAGAAAAGC-TTTTCTTGCGAAACCAAAGCATC
* * * * * * * * ** *
2709843 AGTGTCCTTTATCCTAAT--GAAGGGAATATGTTCT-TAGTTCCCAATCACGAAAAGAATGGAGA
1 AATATCGTGTATCCTAATGAGAAGAGAATGTGTT-TATAGTGCCTAATCATAAAAAGAATGAAGA
* * * * * * * * * * ***
2709905 CGC-TTA-TGGGAATCGATGCTTGTCGT-AATTAGGGGATGAA-TATTGAAATTAAGGAAAACAA
65 CTCATTACT-AGAATC-ATGTTTGTC-TCATTTAAGGCATGAACT-TAG-ACTTTAGCAAAATTG
* * * * ** * *
2709966 G-G-CAAAGAAAAGATTTGCATGCAAAAGAAAATCATG
125 GTGAC-AAGAAAAGCTTTTCTTGCGAAACCAAAGCATC
* * * * * *
2710002 ACTATCGTTTATCCCAATGAG--GAGAATGTGTTTATAGTGCCTAATAACAAAAAGAATGAGGA-
1 AATATCGTGTATCCTAATGAGAAGAGAATGTGTTTATAGTGCCTAATCATAAAAAGAATGAAGAC
* * * *
2710064 TCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCATGAACATAGACTTT-GCAAAAATTGGTGG
66 TCATTACTAGAATCAT-GTTTGTCTCATTTAAGGCATGAACTTAGACTTTAGC-AAAATTGGTGA
* * *
2710128 CAAG-AAGGCATTTCTTAC-AAACCCAAAGCATC
129 CAAGAAAAGCTTTTCTTGCGAAA-CCAAAGCATC
* * * * * * * * * **
2710160 AATATCATATATCCTTATGATAAGACAA--AGTTTATGGTACCTAATCATCAAAAGAATGGGGAC
1 AATATCGTGTATCCTAATGAGAAGAGAATGTGTTTATAGTGCCTAATCATAAAAAGAATGAAGAC
* * * * *** * *
2710223 TAGCATGAC-A-ATTCATGTTTGTCTTATTTACAAGACA--AA-TTTTTCTTCTATCAAAAATGG
66 T--CATTACTAGAATCATGTTTGTCTCATTT--AAGGCATGAACTTAGACTT-TAGCAAAATTGG
* *
2710283 TAGA-AAGAAAA-CATTTTCTTGCGATACCAAAGCTTC
126 T-GACAAGAAAAGC-TTTTCTTGCGAAACCAAAGCATC
* * * ** * * *
2710319 AATGTCATGTATCCTAAT--GAAGGGAATGTGCTTT-TCCTTCCCAATC-TCGAAAATAG-TTG-
1 AATATCGTGTATCCTAATGAGAAGAGAATGTG-TTTATAGTGCCTAATCAT--AAAA-AGAATGA
* * * * * * *
2710378 AGACT-TTTA-TGAGAATTGATGCTTGTCAT-ATTTAAGGGATGAATTTTGA-TATTAAGGAAAA
62 AGACTCATTACT-AGAA-TCATGTTTGTC-TCATTTAAGGCATGAACTTAGACT-TT-AGCAAAA
* * * ** * *
2710439 -TAGTG-CAAAGAAAAG-ATTTCAATG-GAAAAGAAAATCGTC
122 TTGGTGAC-AAGAAAAGCTTTTC-TTGCG-AAACCAAAGCATC
* * * *
2710478 AATATTGTTTATCCTAATGAG--GAGAATGTGTTTATAATGCCTAATCA-CAAAAGAATGAAGA-
1 AATATCGTGTATCCTAATGAGAAGAGAATGTGTTTATAGTGCCTAATCATAAAAAGAATGAAGAC
* * * * * * *
2710539 TCATTACTAGAATCCTCGTTTGTCTCATTTGAGGTACGAACTTAAACTTTA-CAAAATTTGTTGG
66 TCATTACTAGAATCAT-GTTTGTCTCATTTAAGGCATGAACTTAGACTTTAGCAAAA-TTGGTGA
* * **
2710603 CAA-TAAAGCCTTTCTTATGAAACCAAAGCATC
129 CAAGAAAAGCTTTTCTTGCGAAACCAAAGCATC
* * * * * * * * * **
2710635 AATATCATGTATCCCT-ATGAGAAGACAA--AGTTTATGGTACCTAATCGTGAAAACAGTGGGGA
1 AATATCGTGTAT-CCTAATGAGAAGAGAATGTGTTTATAGTGCCTAATCATAAAAAGAATGAAGA
* * * * * * *
2710697 TTGGCATGAC-A-ATTCATCTTTGTCTTATTTAAGAGACA--AACTT-TACTTCTATCAATAA-T
65 CT--CATTACTAGAATCATGTTTGTCTCATTTAAG-G-CATGAACTTAGACTT-TAGCAA-AATT
* **
2710756 GGTGGA-AAGAAAACCTTTTCTTGCGATTCCAAAGCATC
124 GGT-GACAAGAAAAGCTTTTCTTGCGAAACCAAAGCATC
* * * * * * * *
2710794 AATGTCATGTATCCTAAT-AAAAG-GAATGTGCTTT-T-GCT-TCTCAATCTTGAAAAGAGTGGA
1 AATATCGTGTATCCTAATGAGAAGAGAATGTG-TTTATAG-TGCCT-AATCATAAAAAGAATGAA
* * * * * * *
2710854 GACT-TTTA-TGAGAATTGATGATTGTCAT-ATTTAAGGGATGAATTTTGA-TATTAAGGAAAAT
63 GACTCATTACT-AGAA-TCATGTTTGTC-TCATTTAAGGCATGAACTTAGACT-TT-AGCAAAAT
* * * * ** ** * * *
2710915 AGG-G-CAAAAAAAAG-ATTTCAATGAAAAAAAAAATCGTT
123 TGGTGAC-AAGAAAAGCTTTTC-TTGCGAAACCAAAGCATC
* * *
2710953 AGTATCAT-TCATCCTACTGAG--GAGAATGTGTTTATAGTGCCTAATCA-AAAAATGAATGAAG
1 AATATCGTGT-ATCCTAATGAGAAGAGAATGTGTTTATAGTGCCTAATCATAAAAA-GAATGAAG
* ** *
2711014 A-TCATTACTAGAATCCTCGTTTGTCTCATTTGGGGCACGAACTTAGACTTT-GCAGAAATTGGT
64 ACTCATTACTAGAATCAT-GTTTGTCTCATTTAAGGCATGAACTTAGACTTTAGCA-AAATTGGT
* * * *
2711077 GGCAAG-AAAGCCTTTCCTACGAAACCAAAGCATC
127 GACAAGAAAAGCTTTTCTTGCGAAACCAAAGCATC
* * * * * **
2711111 AATATTGTGTATCCTTATAAGAAGACG-A--TGTTTAT-GCTGCCTAATCGTGAAAAGAATGGGG
1 AATATCGTGTATCCTAATGAGAAGA-GAATGTGTTTATAG-TGCCTAATCATAAAAAGAATGAAG
** * * * * * * ** ***
2711172 ACT-AGCA-TGAGTATTATTGTTTGTCTTATTT-AGGTGATAAACTT-TACTTCTATAAAAAACA
64 ACTCATTACT-AGAATCA-TGTTTGTCTCATTTAAGG-CATGAACTTAGACTT-TAGCAAAATTG
* ** * * * *
2711233 GCGGGAAGGAAATCTTTTCTTGCGATACCATAGCATC
125 GTGACAAGAAAAGCTTTTCTTGCGAAACCAAAGCATC
* * * * * * * * *
2711270 AATGTCTTGTATCCTGAT--GAAGGGAATGTGTTCT-TAGTTCCAAATC-TCGAAAAGATTGGAG
1 AATATCGTGTATCCTAATGAGAAGAGAATGTGTT-TATAGTGCCTAATCAT-AAAAAGAATGAAG
** * * * * * * **
2711331 ACTC-TTAGAAGAATCTATGCTTGTCAT-AATTAAGGGATGAATTTCGA-TATTAAGGAAAATAA
64 ACTCATTACTAGAATC-ATGTTTGTC-TCATTTAAGGCATGAACTTAGACT-TT-AGCAAAATTG
* * ** * *
2711393 G-G-CAAAGAAAAG-TTTTCAATGCAAAAGAAAAATCGTC
125 GTGAC-AAGAAAAGCTTTTC-TTGCGAAA-CCAAAGCATC
* * * *
2711430 AATATCGTTTATCCTAATGAG--GAGAATGTGTTTATAGTGCCAAATCACAAAATGGAA-GAAGA
1 AATATCGTGTATCCTAATGAGAAGAGAATGTGTTTATAGTGCCTAATCATAAAA-AGAATGAAGA
* * * * * * * * *
2711492 -TCATTACTGGAATCCTCATTTGCCTCATTTGAGCCACGAACTTCGACTTTA-CAAAAATTAGTG
65 CTCATTACTAGAATCAT-GTTTGTCTCATTTAAGGCATGAACTTAGACTTTAGC-AAAATTGGTG
* * * * *
2711555 GCAA-TAAAGCTTTTCTTACAAAACCAACGCATC
128 ACAAGAAAAGCTTTTCTTGCGAAACCAAAGCATC
* * * * * * **
2711588 AATATCGTGTATCCCT-ATGAGAAGACAA-AT-TTTATGGTGCCTAATCGTGAAAAGAGTGGGGA
1 AATATCGTGTAT-CCTAATGAGAAGAGAATGTGTTTATAGTGCCTAATCATAAAAAGAATGAAGA
* * * * * * ** * * * ** *
2711650 TTGGCATGAC-A-ATTCGTGTTTATCTTATTTAAGAAAT-ATACTT-TATTTCTATCAAAAACGA
65 CT--CATTACTAGAATCATGTTTGTCTCATTTAAGGCATGA-ACTTAGACTT-TAGCAAAATTGG
* ** *
2711711 TGGA-AAGAAAA-CTTTTGTTGCGATTCCAAAGCGTC
126 T-GACAAGAAAAGCTTTTCTTGCGAAACCAAAGCATC
* * * * * * * ** *
2711746 AATGTCATGTATCCTAAT-A-AAGGGCATGTGCTTT-T-GCT-TCTCAATCTTGAAAAGAGCGGA
1 AATATCGTGTATCCTAATGAGAAGAGAATGTG-TTTATAG-TGCCT-AATCATAAAAAGAATGAA
* * * * * * * * *
2711806 GACT-TTTA-TGAGAATTGATGATTGTCTTATTTAAGGGATGAATTTTGA-TATTAAGGAAAATA
63 GACTCATTACT-AGAA-TCATGTTTGTCTCATTTAAGGCATGAACTTAGACT-TT-AGCAAAATT
* * * ** * * *
2711868 GG-G-CAAAGAAAAG-ATTTCAAT--AAAAAAAAATCGTT
124 GGTGAC-AAGAAAAGCTTTTC-TTGCGAAACCAAAGCATC
* * * * *
2711903 AATATCATTTATCCTACTGAG--GAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGA-
1 AATATCGTGTATCCTAATGAGAAGAGAATGTGTTTATAGTGCCTAATCATAAAAAGAATGAAGAC
* * * * *
2711965 TCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAGCTTAGACTTT-GCAGAAATTGGTGG
66 TCATTACTAGAATCAT-GTTTGTCTCATTTAAGGCATGAACTTAGACTTTAGCA-AAATTGGTGA
* **
2712029 CAAG-AAAGCCTTTCTTATGAAACCAAAGCATC
129 CAAGAAAAGCTTTTCTTGCGAAACCAAAGCATC
* * * * * * * * ** *
2712061 GATATCGTGTATCCTTATGAGAAGACAA--CGTTTATGGTGCCTAATCGTGAAAAGAGTGGGGAT
1 AATATCGTGTATCCTAATGAGAAGAGAATGTGTTTATAGTGCCTAATCATAAAAAGAATGAAGAC
* * * * * * *
2712124 TAGCCTGAC-A-ATTCATGTTTGTCTTATTTAAGAGACA--AACTT-TACTTCTATCAAAAATGG
66 T--CATTACTAGAATCATGTTTGTCTCATTTAAG-G-CATGAACTTAGACTT-TAGCAAAATTGG
* *
2712184 TAGA-AAGAAAACCTTTTCTTGCGATACCAAAGCATC
126 T-GACAAGAAAAGCTTTTCTTGCGAAACCAAAGCATC
* * * * * ** **
2712220 AATGTCATGTATCCT-AT----------T-TG-CT-TA-T--C-AATCTTGAAAAGGGTGGGGAC
1 AATATCGTGTATCCTAATGAGAAGAGAATGTGTTTATAGTGCCTAATCATAAAAAGAATGAAGAC
** * * * * * * * * **
2712267 TTTTTTGA-GA-ATTGATGCTTGTCGT-ATTTAAGGCACGAATTTTGA-TATTAAGGAAAACAGG
66 -TCATT-ACTAGAATCATGTTTGTC-TCATTTAAGGCATGAACTTAGACT-TT-AGCAAAATTGG
* ** * ** * * *
2712328 -G-CAAAGAAAAG-ATTTCAAGGGAAAAAGAAAATCGTT
126 TGAC-AAGAAAAGCTTTTCTTGCG--AAACCAAAGCATC
* * * * * *
2712364 AATATCGTTTATCCTAA--AGAGGATAATGTGTTTATAGTCCCTAATCACAAAATGAATGAAGA-
1 AATATCGTGTATCCTAATGAGAAGAGAATGTGTTTATAGTGCCTAATCATAAAAAGAATGAAGAC
* * * *
2712426 TCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCATGAATTTAGACTTTA-CAAAAGTTGGTGG
66 TCATTACTAGAATCAT-GTTTGTCTCATTTAAGGCATGAACTTAGACTTTAGCAAAA-TTGGTGA
* *
2712490 CAAG-AAAGCCTTTCTTACGAAACCAAAGCATC
129 CAAGAAAAGCTTTTCTTGCGAAACCAAAGCATC
* * * * * * * * * * ** *
2712522 AATATCGTGAATCCTTATGAGAAGACAA--AGTTTGTGGTGCCTAGTCGTGAAAAGAGTGGGGAT
1 AATATCGTGTATCCTAATGAGAAGAGAATGTGTTTATAGTGCCTAATCATAAAAAGAATGAAGAC
* * * * * *
2712585 TGGCATGAC-A-ATTCATGTTTGTCTTATTTAAGAGACA--AACTT-TACTTCTATCAAAAATGG
66 T--CATTACTAGAATCATGTTTGTCTCATTTAAG-G-CATGAACTTAGACTT-TAGCAAAATTGG
* * **
2712645 TGGA-AAGAAAAACTTTTCTTGCCATTCCAAA-CTATC
126 T-GACAAGAAAAGCTTTTCTTGCGAAACCAAAGC-ATC
* * ** ** * ** ** *
2712681 AATGTCATGTATCCTAAT--GAATTGAATGTGCTTT-T-GCT-TTTCAATCTTGGAAAGAGCGGA
1 AATATCGTGTATCCTAATGAGAAGAGAATGTG-TTTATAG-TGCCT-AATCATAAAAAGAATGAA
* * * * * * * *
2712741 GACT-TTTA-TAAGAATTGATGCTTGTCAT-ATTTAAGGGATGAATTTTGA-TATTAAGGAAAAC
63 GACTCATTACT-AGAA-TCATGTTTGTC-TCATTTAAGGCATGAACTTAGACT-TT-AGCAAAAT
* * * ** * * *
2712802 AGG-G-CAAAGAAAAG-ATTTCAATG-GAAAAGAAAATCGTT
123 TGGTGAC-AAGAAAAGCTTTTC-TTGCG-AAACCAAAGCATC
* * * * * * *
2712840 ATTATCATTTATCCTATTGAG--GAGAATGTGTTTATAGTGCCTTATCACAAAATGAATGAAGA-
1 AATATCGTGTATCCTAATGAGAAGAGAATGTGTTTATAGTGCCTAATCATAAAAAGAATGAAGAC
* * * *
2712902 TCATTACTAGAATCCTCGTTTGTCTCATTTGAGGTATGAACTTAGACTTTA-CAAAAATTGGTGG
66 TCATTACTAGAATCAT-GTTTGTCTCATTTAAGGCATGAACTTAGACTTTAGC-AAAATTGGTGA
* ** *
2712966 TAAG-AAAGCCATTCTTACGAAACCAAAGCATC
129 CAAGAAAAGCTTTTCTTGCGAAACCAAAGCATC
* * ** * * ** * **
2712998 AATATCCTGTATTCTTCTGAGAAGACAA--TGTTTATGGTGCCTAATTGTGAAAAGAATGGGGAC
1 AATATCGTGTATCCTAATGAGAAGAGAATGTGTTTATAGTGCCTAATCATAAAAAGAATGAAGAC
* * * * * * * * * **
2713061 TAGCGTGACT--ATTCTTGTTTGTC-CTATCTAACAGACA--AACTT-TACTTCAATCAAAAACG
66 T--CATTACTAGAATCATGTTTGTCTC-AT-TTA-AGGCATGAACTTAGACTT-TAGCAAAATTG
*
2713120 GTGGA-AAGAAAA-CTTTTTCTTGC-AGCACCAAAGCATC
125 GT-GACAAGAAAAGC-TTTTCTTGCGA-AACCAAAGCATC
* * * * ** *
2713157 AATGTCATGTATCCTAAT--GAAGGGAATGTGTTCT-TAGCT-CCCAATC-TCGGAAAGAATGGA
1 AATATCGTGTATCCTAATGAGAAGAGAATGTGTT-TATAG-TGCCTAATCAT-AAAAAGAATGAA
* * * * * * * * * *
2713217 GACTC-TTACGAGAATCGATGCTTATCGT-AATTAAGGGATGAATTTTGAAATTAATG-AAAATA
63 GACTCATTACTAGAATC-ATGTTTGTC-TCATTTAAGGCATGAACTTAG-ACTTTA-GCAAAATT
* * * * ** * *
2713279 GG-G-CAAAGAAAAGATTTCCATGCAAAAGAAAATCATG
124 GGTGAC-AAGAAAAGCTTTTCTTGCGAAACCAAAGCATC
*
2713316 AATATCGT-TGATCCTAATGAG--GAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGA
1 AATATCGTGT-ATCCTAATGAGAAGAGAATGTGTTTATAGTGCCTAATCATAAAAAGAATGAAGA
* *
2713378 -TCATTACTAGAATCCTCGTTTGTCTCATTTAAGGCATGAACTTAGACTTTA-CAAAATTGGTAA
65 CTCATTACTAGAATCAT-GTTTGTCTCATTTAAGGCATGAACTTAGACTTTAGCAAAATTGGTGA
* **
2713441 CAAG-AAAGCCTTTCTTATGAAACCAAAGCATC
129 CAAGAAAAGCTTTTCTTGCGAAACCAAAGCATC
* * * * * * ** *
2713473 AATATCATCTATCCTTATGAGAAGAGAA--AGTTTATGGTGCCTAATCATGAAAAGAATGGGGAT
1 AATATCGTGTATCCTAATGAGAAGAGAATGTGTTTATAGTGCCTAATCATAAAAAGAATGAAGAC
* * ** * * **
2713536 TAGCATGA-TA-ATTCATGTTTGTCTTTTTTAAGAGACA--AACTT-TACTTCTATCAAAAACGG
66 T--CATTACTAGAATCATGTTTGTCTCATTTAAG-G-CATGAACTTAGACTT-TAGCAAAATTGG
** * * *
2713596 TGGGAAGAAAAGATTTTCTTGTGACACCAAAGCATC
126 TGACAAGAAAAGCTTTTCTTGCGAAACCAAAGCATC
* * * * * * *
2713632 AGTGTCCTGTATCCTAAT--GAAGGGAATGTGTTCT-TAGTTCCTAATCTTAAAAAGAATGGAGA
1 AATATCGTGTATCCTAATGAGAAGAGAATGTGTT-TATAGTGCCTAATCATAAAAAGAATGAAGA
* * ** * * * * * * **
2713694 CTC-TTACAAAAATCGATGCCTGTCACAATTAAGGGATGAATTTCGA-TATTAAGGAAAATAAG-
65 CTCATTACTAGAATC-ATGTTTGTCTCATTTAAGGCATGAACTTAGACT-TT-AGCAAAATTGGT
* * * ** * *
2713756 G-CAAAGAAAAG-ATTTCAATGCAAAAGAAAATCGTC
127 GAC-AAGAAAAGCTTTTC-TTGCGAAACCAAAGCATC
* * * *
2713791 AATATCGTTTATCCTAACGAG--GAGAATGTGTTTATAGTGCCTAATCACAAAATA-AAAGAAGA
1 AATATCGTGTATCCTAATGAGAAGAGAATGTGTTTATAGTGCCTAATCATAAAA-AGAATGAAGA
* * * *
2713853 -TCAATACTCGAATCCTCGTTTGTCTCATTTGAGGCATGAACTTAGACTTTA-CAAAAATTGGTG
65 CTCATTACTAGAATCAT-GTTTGTCTCATTTAAGGCATGAACTTAGACTTTAGC-AAAATTGGTG
* *
2713916 GCAAG-AAAGCTTTTCTTACG-AACACAAAGCATC
128 ACAAGAAAAGCTTTTCTTGCGAAAC-CAAAGCATC
* * * * * **
2713949 AATATCGTGTATCCTTATGAGAAGACAA--AGTTTATGGTGCCTAATCATGAAAAGAATGGGGAC
1 AATATCGTGTATCCTAATGAGAAGAGAATGTGTTTATAGTGCCTAATCATAAAAAGAATGAAGAC
* * * * * * * * *
2714012 TAGCATGAC-A-ATTCGTGTTTGTCTTATTTACAAGACA--AACTT--TCTTCTATCAAAAATCG
66 T--CATTACTAGAATCATGTTTGTCTCATTT--AAGGCATGAACTTAGACTT-TAGCAAAATTGG
* * * *
2714071 TGGAC-ACAAAA-CATTTTCTTGGGACACGAAAGCATC
126 T-GACAAGAAAAGC-TTTTCTTGCGAAACCAAAGCATC
* * * * * * * * ** *
2714107 AGTGTCCTTTATCCTAAT--GAAGGGAATATGTTCT-TAGTTCCCAATCACGAAAAGAATGGAGA
1 AATATCGTGTATCCTAATGAGAAGAGAATGTGTT-TATAGTGCCTAATCATAAAAAGAATGAAGA
* * * * * * * * * * ***
2714169 CGC-TTA-TGGGAATCGATGCTTGTCGT-AATTAGGGGATGAA-TATTGAAATTAAGGAAAACAA
65 CTCATTACT-AGAATC-ATGTTTGTC-TCATTTAAGGCATGAACT-TAG-ACTTTAGCAAAATTG
* * * * ** * *
2714230 G-G-CAAAGAAAAGATTTGCATGCAAAAGAAAATCATG
125 GTGAC-AAGAAAAGCTTTTCTTGCGAAACCAAAGCATC
* * * * * *
2714266 ACTATCGTTTATCCCAATGAG--GAGAATGTGTTTATAGTGCCTAATAACAAAAAGAATGAGGA-
1 AATATCGTGTATCCTAATGAGAAGAGAATGTGTTTATAGTGCCTAATCATAAAAAGAATGAAGAC
* * * *
2714328 TCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCATGAACATAGACTTT-GCAAAAATTGGTGG
66 TCATTACTAGAATCAT-GTTTGTCTCATTTAAGGCATGAACTTAGACTTTAGC-AAAATTGGTGA
* * *
2714392 CAAG-AAGGCATTTCTTAC-AAACCCAAAGCATC
129 CAAGAAAAGCTTTTCTTGCGAAA-CCAAAGCATC
* * * * * * * * * **
2714424 AATATCATATATCCTTATGATAAGACAA--AGTTTATGGTACCTAATCATCAAAAGAATGGGGAC
1 AATATCGTGTATCCTAATGAGAAGAGAATGTGTTTATAGTGCCTAATCATAAAAAGAATGAAGAC
* * * * *** * *
2714487 TAGCATGAC-A-ATTCATGTTTGTCTTATTTACAAGACA--AA-TTTTTCTTCTATCAAAAATGG
66 T--CATTACTAGAATCATGTTTGTCTCATTT--AAGGCATGAACTTAGACTT-TAGCAAAATTGG
* *
2714547 TAGA-AAGAAAA-CATTTTCTTGCGATACCAAAGCTTC
126 T-GACAAGAAAAGC-TTTTCTTGCGAAACCAAAGCATC
* * * ** * * *
2714583 AATGTCATGTATCCTAAT--GAAGGGAATGTGCTTT-TCCTTCCCAATC-TCGAAAATAG-TTG-
1 AATATCGTGTATCCTAATGAGAAGAGAATGTG-TTTATAGTGCCTAATCAT--AAAA-AGAATGA
* * * * * * *
2714642 AGACT-TTTA-TGAGAATTGATGCTTGTCAT-ATTTAAGGGATGAATTTTGA-TATTAAGGAAAA
62 AGACTCATTACT-AGAA-TCATGTTTGTC-TCATTTAAGGCATGAACTTAGACT-TT-AGCAAAA
* * * ** * *
2714703 -TAGTG-CAAAGAAAAG-ATTTCAATG-GAAAAGAAAATCGTC
122 TTGGTGAC-AAGAAAAGCTTTTC-TTGCG-AAACCAAAGCATC
* * * *
2714742 AATATTGTTTATCCTAATGAG--GAGAATGTGTTTATAATGCCTAATCA-CAAAAGAATGAAGA-
1 AATATCGTGTATCCTAATGAGAAGAGAATGTGTTTATAGTGCCTAATCATAAAAAGAATGAAGAC
* * * * * * *
2714803 TCATTACTAGAATCCTCGTTTGTCTCATTTGAGGTACGAACTTAAACTTTA-CAAAATTTGTTGG
66 TCATTACTAGAATCAT-GTTTGTCTCATTTAAGGCATGAACTTAGACTTTAGCAAAA-TTGGTGA
* * **
2714867 CAA-TAAAGCCTTTCTTATGAAACCAAAGCATC
129 CAAGAAAAGCTTTTCTTGCGAAACCAAAGCATC
*
2714899 AATATCATGTATCCCT-ATGAGAAGA
1 AATATCGTGTAT-CCTAATGAGAAGA
2714924 CAAAGTTTAT
Statistics
Matches: 4603, Mismatches: 1429, Indels: 1267
0.63 0.20 0.17
Matches are distributed among these distances:
141 2 0.00
142 9 0.00
143 51 0.01
144 31 0.01
145 1 0.00
146 1 0.00
147 1 0.00
148 1 0.00
149 1 0.00
153 1 0.00
154 2 0.00
155 9 0.00
156 92 0.02
157 545 0.12
158 1458 0.32
159 1918 0.42
160 396 0.09
161 83 0.02
162 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (161 bp):
AATATCGTGTATCCTAATGAGAAGAGAATGTGTTTATAGTGCCTAATCATAAAAAGAATGAAGAC
TCATTACTAGAATCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTAGCAAAATTGGTGACA
AGAAAAGCTTTTCTTGCGAAACCAAAGCATC
Found at i:2717014 original size:24 final size:23
Alignment explanation
Indices: 2716981--2717072 Score: 70
Period size: 24 Copynumber: 4.2 Consensus size: 23
2716971 AAGAGAAAGA
*
2716981 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATA-GAGG
*
2717005 AGAGACAGGA--GA-GAT--AGT
1 AGAGACAGGAGGGATGATAGAGG
*
2717023 AGAGATAGGAGGGATGATAGTAGG
1 AGAGACAGGAGGGATGATAG-AGG
* * *
2717047 AGAGACAAGAGAGATAATAGA-G
1 AGAGACAGGAGGGATGATAGAGG
2717069 AGAG
1 AGAG
2717073 GAGGGATGAC
Statistics
Matches: 54, Mismatches: 8, Indels: 14
0.71 0.11 0.18
Matches are distributed among these distances:
18 11 0.20
20 2 0.04
21 6 0.11
22 7 0.13
23 1 0.02
24 27 0.50
ACGTcount: A:0.43, C:0.02, G:0.43, T:0.11
Consensus pattern (23 bp):
AGAGACAGGAGGGATGATAGAGG
Found at i:2717033 original size:42 final size:42
Alignment explanation
Indices: 2716972--2717103 Score: 176
Period size: 42 Copynumber: 3.1 Consensus size: 42
2716962 TAGCCCTCAA
* * *
2716972 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAAG
* *
2717014 AGAGATAGTAGAGATAGGAGGGATGATAGTAGGAGAGACAAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAAG
* * *
2717056 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAGGAGAGAAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGA-GAGACAAG
2717099 A-AGAT
1 AGAGAT
2717104 GGAAGAGTGA
Statistics
Matches: 79, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
42 71 0.90
43 8 0.10
ACGTcount: A:0.45, C:0.02, G:0.44, T:0.09
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAAG
Found at i:2723127 original size:297 final size:297
Alignment explanation
Indices: 2722593--2723178 Score: 818
Period size: 297 Copynumber: 2.0 Consensus size: 297
2722583 TATCCTTATG
* * **
2722593 AGAAGACAAAGTTTATGGTGTCTAATCATGAAAAGAATGGGGATTAGAATGACAATTCATGTTTG
1 AGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATAGGGACGAGAATGACAATTCATGTTTG
*
2722658 TCTTATTTAAGAGACAAACTTTACTTTTATCAAAAACGGGGGAAAGAAAACATTTTCTTGCGACA
66 TCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGGGGAAAGAAAACATTTTCTTGCGACA
* *
2722723 CCAAAGCATCAATGTCATATATCATAATGAAGGGAATATGTTCTCAGCTCCTAATCTCGAAAGGA
131 CCAAAGCATCAATGTCATATATCATAATGAAGGGAATATGTTCTCAGCTCCCAATCTCGAAAAGA
*
2722788 ATGGAGACTCTTACAAGAATCGATGCTTGTCATAATTAAGGGATGAATTTTGATATTAAGGAAAA
196 ATGGAGACTCTTACAAGAATCGATGCTTGTCATAATTAAGGGATGAATTTTGATATTAAGAAAAA
* * *
2722853 TAGGGTAAAGAAAAGATTTCCATGCAAAATAGGGCAA
261 TAAGGCAAACAAAAGATTTCCATGCAAAATAGGGCAA
* * * * *
2722890 AGAAGACAAAGTTTATGGTGCCTAATCGTTAAATGAATAGGGACGAGCATGGCAATTCATGTTTG
1 AGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATAGGGACGAGAATGACAATTCATGTTTG
* * * * *
2722955 TCTTATTTAAGAGACAAACTTTTCTTCTATCAAAAATGGTGGAACGTAAACATTTTCTTGCGACA
66 TCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGGGGAAAGAAAACATTTTCTTGCGACA
* * * *
2723020 CCAAAGCATCAACT-TCATGTATCCTAATGAAGGGAATGTGCTT-T-TGCTTCCCAATCTCGAAA
131 CCAAAGCATCAA-TGTCATATATCATAATGAAGGGAATATG-TTCTCAGC-TCCCAATCTCGAAA
* * ** * * *
2723082 AGAGTGGAGACTTTTATGAGAATTGGTGCTTGTCATATTTAAGGGATGAATTTTGATATTAAGAA
193 AGAATGGAGACTCTTACAAGAATCGATGCTTGTCATAATTAAGGGATGAATTTTGATATTAAGAA
* *
2723147 AAATAAGGCAACCAAAAGATTTCTATGCAAAA
258 AAATAAGGCAAACAAAAGATTTCCATGCAAAA
2723179 GAAAATCATG
Statistics
Matches: 252, Mismatches: 34, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
296 2 0.01
297 247 0.98
298 3 0.01
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.29
Consensus pattern (297 bp):
AGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATAGGGACGAGAATGACAATTCATGTTTG
TCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGGGGAAAGAAAACATTTTCTTGCGACA
CCAAAGCATCAATGTCATATATCATAATGAAGGGAATATGTTCTCAGCTCCCAATCTCGAAAAGA
ATGGAGACTCTTACAAGAATCGATGCTTGTCATAATTAAGGGATGAATTTTGATATTAAGAAAAA
TAAGGCAAACAAAAGATTTCCATGCAAAATAGGGCAA
Found at i:2723614 original size:476 final size:476
Alignment explanation
Indices: 2722890--2723821 Score: 1284
Period size: 476 Copynumber: 2.0 Consensus size: 476
2722880 AATAGGGCAA
* * * * *
2722890 AGAAGACAAAGTTTATGGTGCCTAATCGTTAAATGAATAGGGACGAGCATGGCAATTCATGTTTG
1 AGAAAACAAAGTTTATGGTGCCTAATCATGAAAAGAATAGGGACGAGCATGACAATTCATGTTTG
* * * ** * *
2722955 TCTTATTTAAGAGACAAACTTTTCTTCTATCAAAAATGGTGGAACGTAAACATTTTCTTGCGACA
66 TCTTATTGAAGAGACAAACTTTACTGCTATCAAAAATAATGGAAAGAAAACATTTTCTTGCGACA
* * * *
2723020 CCAAAGCATCAACTTCATGTATCCTAATGAAGGGAATGTGCTTTTGCTTCCCAATCTCGAAAAGA
131 CCAAAGCATCAACTTCAAGTATCCTAATAAAGGGAATGTGCTATAGCTTCCCAATCTCGAAAAGA
* * * * *** * *
2723085 GTGGAGACTTTTATGAGAATTGGTGCTTGTCATATTTAAGGGATGAATTTTGATATTAAGAAAAA
196 ATGGAGACTCTTACGAAAATCAATGCTTGCCATAATTAAGGGATGAATTTTGATATTAAGAAAAA
** * *
2723150 TAAGGCAACCAAAAGATTTCTATGCAAAAGAAAATCA-TGAATATCGTTCA-CCATAGTAAGGAG
261 TAAGGCAAAAAAAAGATTTCCATGCAAAAGAAAA-CATTGAATATCGTTCATCC-TAATAAGGAG
* * *
2723213 AATGTGTTTGTAGTGCCTAATCACAGAAA-GAATGAAAATCATTACTAGAATCCTCGTTTCTCTC
324 AATGTGTTTATAATGCCTAATCACA-AAAGGAATGAAAATCATTACTAGAATCCTCATTTCTCTC
* *
2723277 ACTTGAGGTACGAACTTAGACTTTGCAAAAATCGGGGACAAGAAAGCCTTTCTTACAAAACCAAA
388 ACTTGAGGAACGAACTTAGACTTTACAAAAATCGGGGACAAGAAAGCCTTTCTTACAAAACCAAA
2723342 GCATCAATATCGTGTATCCTTCTG
453 GCATCAATATCGTGTATCCTTCTG
**
2723366 AGAAAACAAAGTTTATGGTGCCTAATCATGAAAAGAATAGGGATTAGCATGACAATTCATGTTTG
1 AGAAAACAAAGTTTATGGTGCCTAATCATGAAAAGAATAGGGACGAGCATGACAATTCATGTTTG
2723431 TCTTATTGAAGAGACAAACTTTACTGCTATC-AAAATCAATGGAAAGAAAACATTTTCTTGCGAC
66 TCTTATTGAAGAGACAAACTTTACTGCTATCAAAAAT-AATGGAAAGAAAACATTTTCTTGCGAC
* *
2723495 ACCAAAGCATCAA-TGTCAAGTATCCTAATAAAGGGAAAATGTTC-ATAGC-TCCCATTCTCGAA
130 ACCAAAGCATCAACT-TCAAGTATCCTAATAAAGGG--AATGTGCTATAGCTTCCCAATCTCGAA
*
2723557 AAGAATGGAGACTCTTACGAAAATCAATGCTTGCCATAATTAAGGGATGAATTTTGATATTATGA
192 AAGAATGGAGACTCTTACGAAAATCAATGCTTGCCATAATTAAGGGATGAATTTTGATATTAAGA
* * * *
2723622 AAAATAGGGCAAAAAAAAGATTTCCATGCAAAAGAAAAGATTGAATATCGTTTATCCTAATGAGG
257 AAAATAAGGCAAAAAAAAGATTTCCATGCAAAAGAAAACATTGAATATCGTTCATCCTAATAAGG
* * *
2723687 AGAATGTGTTTATAATGCCTAATCATAAAAGGAATGAAGATCATTACTAGAATCCTCATTTGTCT
322 AGAATGTGTTTATAATGCCTAATCACAAAAGGAATGAAAATCATTACTAGAATCCTCATTTCTCT
* * * * * *
2723752 CATTTGAGGAACGAACTTGGACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTTCGAAACCAA
387 CACTTGAGGAACGAACTTAGACTTTACAAAAATCGGGGACAAGAAAGCCTTTCTTACAAAACCAA
2723817 AGCAT
452 AGCAT
2723822 GGATATTGTG
Statistics
Matches: 397, Mismatches: 52, Indels: 14
0.86 0.11 0.03
Matches are distributed among these distances:
475 10 0.03
476 376 0.95
477 5 0.01
478 6 0.02
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (476 bp):
AGAAAACAAAGTTTATGGTGCCTAATCATGAAAAGAATAGGGACGAGCATGACAATTCATGTTTG
TCTTATTGAAGAGACAAACTTTACTGCTATCAAAAATAATGGAAAGAAAACATTTTCTTGCGACA
CCAAAGCATCAACTTCAAGTATCCTAATAAAGGGAATGTGCTATAGCTTCCCAATCTCGAAAAGA
ATGGAGACTCTTACGAAAATCAATGCTTGCCATAATTAAGGGATGAATTTTGATATTAAGAAAAA
TAAGGCAAAAAAAAGATTTCCATGCAAAAGAAAACATTGAATATCGTTCATCCTAATAAGGAGAA
TGTGTTTATAATGCCTAATCACAAAAGGAATGAAAATCATTACTAGAATCCTCATTTCTCTCACT
TGAGGAACGAACTTAGACTTTACAAAAATCGGGGACAAGAAAGCCTTTCTTACAAAACCAAAGCA
TCAATATCGTGTATCCTTCTG
Found at i:2723654 original size:773 final size:773
Alignment explanation
Indices: 2722162--2723654 Score: 2232
Period size: 773 Copynumber: 1.9 Consensus size: 773
2722152 ATTGGGGATT
2722162 AGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCAGAAA
1 AGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCAGAAA
* *
2722227 GAAAATCTTTTCTTGTGACACCAAAGCATTAATGACATGCATCCTAATGAAGGAAATGTGCTTTT
66 GAAAATCTTTTCTTGCGACACCAAAGCATCAATGACATGCATCCTAATGAAGGAAATGTGCTTTT
* * * * *
2722292 GCTTCTCAATCTTGAAAAGTGTGGAGACTTTTATGAGACTTGATGCTTTTCATATTTAAGGGATG
131 GCTTCCCAATCTCGAAAAGAGTGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGGGATG
* * * * *
2722357 AATTTTGATATTAAGGAAAACAGGGCAGAGAAAAGATTTCAATGGAAAAGAAAATCGTCAATATC
196 AATTTTGATATTAAGAAAAACAAGGCAGACAAAAGATTTCAATGCAAAAGAAAATCATCAATATC
* * * * *
2722422 GTTTATCCTAATGAGGAGAGTGTGTTTATAGTGTCTAATCACAAAATGAATGAAGATCATTACTA
261 GTTCATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAAATCATTACTA
* * *
2722487 GAATCCTCGTTTGTCTCATTTGAGGCACAAACTTAGACTTCACAAAAATTGGTGGCAAGAAAGCC
326 GAATCCTCGTTTCTCTCACTTGAGGCACAAACTTAGACTTCACAAAAATCGGTGGCAAGAAAGCC
* * * *
2722552 TTTCTTAAGAAAGCAAAGCATCAATATCGTTTATCCTTATGAGAAGACAAAGTTTATGGTGTCTA
391 TTTCTTAAGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAAACAAAGTTTATGGTGCCTA
* *
2722617 ATCATGAAAAGAATGGGGATTAGAATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTTAC
456 ATCATGAAAAGAATAGGGATTAGAATGACAATTCATGTTTGTCTTATTGAAGAGACAAACTTTAC
** **
2722682 TTTTATCAAAAACGGGGGAAAGAAAACATTTTCTTGCGACACCAAAGCATCAATGTCATATATCA
521 TGCTATCAAAAACAAGGGAAAGAAAACATTTTCTTGCGACACCAAAGCATCAATGTCATATATCA
* * * * *
2722747 TAATGAAGGGAATATGTTCTCAGCTCCTAATCTCGAAAGGAATGGAGACTCTTACAAGAATCGAT
586 TAATAAAGGGAAAATGTTCTCAGCTCCCAATCTCGAAAAGAATGGAGACTCTTACAAGAATCAAT
* * * *
2722812 GCTTGTCATAATTAAGGGATGAATTTTGATATTAAGGAAAATAGGGTAAAGAAAAGATTTCCATG
651 GCTTGCCATAATTAAGGGATGAATTTTGATATTAAGAAAAATAGGGCAAAAAAAAGATTTCCATG
2722877 CAAAATAGGGCAAAGAAGACAAAGTTTATGGTGCCTAATCGTTAAATGAATAGGGACG
716 CAAAATAGGGCAAAGAAGACAAAGTTTATGGTGCCTAATCGTTAAATGAATAGGGACG
* * * ** *
2722935 AGCATGGCAATTCATGTTTGTCTTATTTAAGAGACAAACTTTTCTTCTATCAAAAATGGTGGAAC
1 AGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCAGAAA
* * * *
2723000 GTAAA-CATTTTCTTGCGACACCAAAGCATCAACT-TCATGTATCCTAATGAAGGGAATGTGCTT
66 GAAAATC-TTTTCTTGCGACACCAAAGCATCAA-TGACATGCATCCTAATGAAGGAAATGTGCTT
*
2723063 TTGCTTCCCAATCTCGAAAAGAGTGGAGACTTTTATGAGAATTGGTGCTTGTCATATTTAAGGGA
129 TTGCTTCCCAATCTCGAAAAGAGTGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGGGA
* * *
2723128 TGAATTTTGATATTAAGAAAAATAAGGCA-ACCAAAAGATTTCTATGCAAAAGAAAATCATGAAT
194 TGAATTTTGATATTAAGAAAAACAAGGCAGA-CAAAAGATTTCAATGCAAAAGAAAATCATCAAT
* *
2723192 ATCGTTCA-CCATAGTAAGGAGAATGTGTTTGTAGTGCCTAATCACAGAAA-GAATGAAAATCAT
258 ATCGTTCATCC-TAATAAGGAGAATGTGTTTATAGTGCCTAATCACA-AAATGAATGAAAATCAT
* * **
2723255 TACTAGAATCCTCGTTTCTCTCACTTGAGGTACGAACTTAGACTTTGCAAAAATCGG-GGACAAG
321 TACTAGAATCCTCGTTTCTCTCACTTGAGGCACAAACTTAGACTTCACAAAAATCGGTGG-CAAG
*
2723319 AAAGCCTTTCTTACA-AAACCAAAGCATCAATATCGTGTATCCTTCTGAGAAAACAAAGTTTATG
385 AAAGCCTTTCTTA-AGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAAACAAAGTTTATG
*
2723383 GTGCCTAATCATGAAAAGAATAGGGATTAGCATGACAATTCATGTTTGTCTTATTGAAGAGACAA
449 GTGCCTAATCATGAAAAGAATAGGGATTAGAATGACAATTCATGTTTGTCTTATTGAAGAGACAA
* *
2723448 ACTTTACTGCTATCAAAATCAATGGAAAGAAAACATTTTCTTGCGACACCAAAGCATCAATGTCA
514 ACTTTACTGCTATCAAAAACAAGGGAAAGAAAACATTTTCTTGCGACACCAAAGCATCAATGTCA
* *
2723513 -AGTATCCTAATAAAGGGAAAATGTTCAT-AGCTCCCATTCTCGAAAAGAATGGAGACTCTTACG
579 TA-TATCATAATAAAGGGAAAATGTTC-TCAGCTCCCAATCTCGAAAAGAATGGAGACTCTTAC-
*
2723576 AA-AATCAATGCTTGCCATAATTAAGGGATGAATTTTGATATTATGAAAAATAGGGCAAAAAAAA
641 AAGAATCAATGCTTGCCATAATTAAGGGATGAATTTTGATATTAAGAAAAATAGGGCAAAAAAAA
2723640 GATTTCCATGCAAAA
706 GATTTCCATGCAAAA
2723655 GAAAAGATTG
Statistics
Matches: 644, Mismatches: 66, Indels: 20
0.88 0.09 0.03
Matches are distributed among these distances:
772 7 0.01
773 629 0.98
774 8 0.01
ACGTcount: A:0.37, C:0.15, G:0.19, T:0.29
Consensus pattern (773 bp):
AGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCAGAAA
GAAAATCTTTTCTTGCGACACCAAAGCATCAATGACATGCATCCTAATGAAGGAAATGTGCTTTT
GCTTCCCAATCTCGAAAAGAGTGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGGGATG
AATTTTGATATTAAGAAAAACAAGGCAGACAAAAGATTTCAATGCAAAAGAAAATCATCAATATC
GTTCATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAAATCATTACTA
GAATCCTCGTTTCTCTCACTTGAGGCACAAACTTAGACTTCACAAAAATCGGTGGCAAGAAAGCC
TTTCTTAAGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAAACAAAGTTTATGGTGCCTA
ATCATGAAAAGAATAGGGATTAGAATGACAATTCATGTTTGTCTTATTGAAGAGACAAACTTTAC
TGCTATCAAAAACAAGGGAAAGAAAACATTTTCTTGCGACACCAAAGCATCAATGTCATATATCA
TAATAAAGGGAAAATGTTCTCAGCTCCCAATCTCGAAAAGAATGGAGACTCTTACAAGAATCAAT
GCTTGCCATAATTAAGGGATGAATTTTGATATTAAGAAAAATAGGGCAAAAAAAAGATTTCCATG
CAAAATAGGGCAAAGAAGACAAAGTTTATGGTGCCTAATCGTTAAATGAATAGGGACG
Found at i:2724226 original size:438 final size:438
Alignment explanation
Indices: 2723411--2724259 Score: 1164
Period size: 438 Copynumber: 1.9 Consensus size: 438
2723401 AATAGGGATT
* *
2723411 AGCATGACAATTCATGTTTGTCTTATTGAAGAGACAAACTTTACTGCTATCAAAATCAATGGAAA
1 AGCATGACAATTCATGTTTGTCTTATTGAAGAGAAAAACTTTACTGCTATCAAAAACAATGGAAA
* * * *
2723476 GAAAACATTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTAATAAAGGGAAAATGTTCAT
66 GAAAACACTTTCTTGCGAAACCAAAGCATCAACGTCAAGCATCCTAATAAAGGGAAAATGTTCAT
*
2723541 AGCTCCCATTCTCGAAAAGAATGGAGACTCTTACGAAAATCAATGCTTGCCATAATTAAGGGATG
131 AGCTCCCAATCTCGAAAAGAATGGAGACTCTTACGAAAATCAATGCTTGCCATAATTAAGGGATG
* * * * *
2723606 AATTTTGATATTATGAAAAATAGGGCAAAAAAAAGATTTCCATGCAAAAGAAAAGATTGAATATC
196 AATTTTGATATTAAGAAAAACAGGGCAAAAAAAAGATTTCAATGCAAAAGAAAACATTCAATATC
* * *
2723671 GTTTATCCTAATGAGGAGAATGTGTTTATAATGCCTAATCATAAAAGGAATGAAGATCATTACTA
261 GTTTATCCTAAAGAGGAGAACGTGTTTATAATGCCTAATCACAAAAGGAATGAAGATCATTACTA
*** * *
2723736 GAATCCTCATTTGTCTCATTTGAGGAACGAACTTGGACTTTACAAAAATTGGTGACAAGAAAGCC
326 GAATCCTCATTTGTCTCATCCAAGGAACGAACATAGACTTTACAAAAATTGGTGACAAGAAAGCC
*
2723801 TTTCTTTCGAAACCAAAGCATGGATATTGTGTCTGCTTTCGAAACTAA
391 TTTCTTACGAAACCAAAGCATGGATATTGTGTCTGCTTTCGAAACTAA
* ** *
2723849 AGCATGACAATTCATGTTTGTCTTATTTAAGAGAAAAACTTTACTTTTATCAAAAACAGTGGAAA
1 AGCATGACAATTCATGTTTGTCTTATTGAAGAGAAAAACTTTACTGCTATCAAAAACAATGGAAA
* * * **
2723914 GAAAACCCTTTCTTGCGAAACCAAAGCATCAACGTCATGCGTCCTAATAAAGGGAACGTGCTTC-
66 GAAAACACTTTCTTGCGAAACCAAAGCATCAACGTCAAGCATCCTAATAAAGGGAAAATG-TTCA
* * ** * * * ** * *
2723978 T-GCTTCTCAATGTTTAAAAGAGTGGAGACTTTTACGAGAATTGATGCTTGTCATATTTAAGGGA
130 TAGC-TCCCAATCTCGAAAAGAATGGAGACTCTTACGAAAATCAATGCTTGCCATAATTAAGGGA
* * * * *
2724042 TGAATTTTGATATTAAGGAAAACAGGGCAAAGAAAGGATTTTAATGGAAAAGAAAATCA-TCAAT
194 TGAATTTTGATATTAAGAAAAACAGGGCAAAAAAAAGATTTCAATGCAAAAGAAAA-CATTCAAT
* * * *
2724106 ATTGTTTATCCTAAAGAGGAGAACGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTC
258 ATCGTTTATCCTAAAGAGGAGAACGTGTTTATAATGCCTAATCACAAAAGGAATGAAGATCATTA
* * * *
2724171 CTAGAATCCTCGTTTGTCTCATCCAAGGCACGGACATAGACTTTACAAAAATTGGTGGCAAGAAA
323 CTAGAATCCTCATTTGTCTCATCCAAGGAACGAACATAGACTTTACAAAAATTGGTGACAAGAAA
2724236 GCCTTTCTTACGAAACCAAAGCAT
388 GCCTTTCTTACGAAACCAAAGCAT
2724260 CAATATCATG
Statistics
Matches: 354, Mismatches: 54, Indels: 6
0.86 0.13 0.01
Matches are distributed among these distances:
437 2 0.01
438 348 0.98
439 4 0.01
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.29
Consensus pattern (438 bp):
AGCATGACAATTCATGTTTGTCTTATTGAAGAGAAAAACTTTACTGCTATCAAAAACAATGGAAA
GAAAACACTTTCTTGCGAAACCAAAGCATCAACGTCAAGCATCCTAATAAAGGGAAAATGTTCAT
AGCTCCCAATCTCGAAAAGAATGGAGACTCTTACGAAAATCAATGCTTGCCATAATTAAGGGATG
AATTTTGATATTAAGAAAAACAGGGCAAAAAAAAGATTTCAATGCAAAAGAAAACATTCAATATC
GTTTATCCTAAAGAGGAGAACGTGTTTATAATGCCTAATCACAAAAGGAATGAAGATCATTACTA
GAATCCTCATTTGTCTCATCCAAGGAACGAACATAGACTTTACAAAAATTGGTGACAAGAAAGCC
TTTCTTACGAAACCAAAGCATGGATATTGTGTCTGCTTTCGAAACTAA
Found at i:2726786 original size:159 final size:156
Alignment explanation
Indices: 2726563--2731078 Score: 586
Period size: 159 Copynumber: 28.5 Consensus size: 156
2726553 TTTCTTACGA
* * * * *
2726563 AACCAAAGCATCAATAT-AGTGTATCCTTATGAGAA-GACA-AAGTTTATGGTGCCTAATCAT-G
1 AACCAAAGCATCAATATCA-TGTATCCTAATGA-AAGGA-ATATGTTTATGCTTCCTAAT-GTCG
*
2726624 AAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTACTTAAGAGATAAACTTTACTTCTAT
62 AAAAGAATGGAGATT-GCATGACAATTCATGTTTGTCTTACTTAAGAGATAAACTTTACTT-TAT
2726689 CAAAAACGGCGGAAAGAAAACATTTTCTTGTG
125 CAAAAACGGCGGAAAGAAAACATTTTCTTGTG
** *
2726721 CCCCTAAAGCATCAATATCACGTATCCTAATGAAAGGAATATGCTTT-TGCTTCCTAATGTCGAA
1 AACC-AAAGCATCAATATCATGTATCCTAATGAAAGGAATATG-TTTATGCTTCCTAATGTCGAA
** * * * * * * * * *
2726785 AA-AAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTGAGGGA-AGAATTTTGA-TATTA
64 AAGAA-TGGAGA-TTGCATGACAATTCATGTTTGTCTTACTTAAGAGATA-AACTTT-ACT-TTA
** * * * * ****
2726847 AGAAAAACAGTGCAAAGAAAAGA-TTTCAACAG
124 TCAAAAACGGCGGAAAGAAAACATTTTCTTGTG
** * * * * * **
2726879 AAAAGAAAACAATCAATATCGTTTATCCTAATG-AAGAGAATGTGTTTATAG-TGCCTAATCAC-
1 -AACCAAAGC-ATCAATATCATGTATCCTAATGAAAG-GAATATGTTTAT-GCTTCCTAATGTCG
* * * * * * * ** *
2726941 AAAATGAATGAAGA-T-CATTACTAGAATCCTCGTTTGTCTCATTTGAG-GCACGAACTTAGACT
62 AAAA-GAATGGAGATTGCATGAC-A-ATTCAT-GTTTGTCTTACTTAAGAG-ATAAACTT-TACT
* * * ** * **
2727003 TTA-CAAAAATTGGTGGCAAGAAGGC-CTTTCTTACG
121 TTATCAAAAA-CGGCGGAAAGAAAACATTTTCTTGTG
* * * *
2727038 AAACCAAAGCATCAATAT-ATTGTATCCTTATGAGAA-GACA-AAGTTTATGGTCCCTAATCGT-
1 -AACCAAAGCATCAATATCA-TGTATCCTAATGA-AAGGA-ATATGTTTATGCTTCCTAAT-GTC
*
2727099 GAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTACTTAAGAGATAAACTTTACTTCTA
61 GAAAAGAATGGAGATT-GCATGACAATTCATGTTTGTCTTACTTAAGAGATAAACTTTACTT-TA
2727164 TCAAAAACGGCGGAAAGAAAACATTTTCTTGTG
124 TCAAAAACGGCGGAAAGAAAACATTTTCTTGTG
** * *
2727197 CCCCCAAAGCATCAATGTCGTGTATCCTAATGAAAGGAATATGCTTT-TGCTTCCTAATGTCGAA
1 -AACCAAAGCATCAATATCATGTATCCTAATGAAAGGAATATG-TTTATGCTTCCTAATGTCGAA
** * * * * * * * *
2727261 AA-AAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGA-AGAATTTTGA-TATTA
64 AAGAA-TGGAGA-TTGCATGACAATTCATGTTTGTCTTACTTAAGAGATA-AACTTT-ACT-TTA
*** * * * * ** **
2727323 AGGAAAACAGTGCAAAGAAAAGA-TTTCAACAGAA
124 TCAAAAACGGCGGAAAGAAAACATTTTC--TTGTG
** ** * * * * ** *
2727357 AAGAAAATAATCAATATCGTTTATCCTAATG-AAGAGAATGTGTTTATAG-TGCCTAATCACAAA
1 AACCAAAGCATCAATATCATGTATCCTAATGAAAG-GAATATGTTTAT-GCTTCCTAATGTCGAA
* * * * * * * * * *
2727420 AAGAATGAAGA-T-CATTACTAGAATCCTCATTTGTCTCATTTGAG-GCATGAACTTAGACTTTA
64 AAGAATGGAGATTGCATGAC-A-ATTCAT-GTTTGTCTTACTTAAGAG-ATAAACTT-TACTTTA
* * * ** **
2727482 -CAAAAATTGGTGGCAAG--AAGGTCTTTCTTACG
124 TCAAAAA-CGGCGGAAAGAAAACAT-TTTCTTGTG
* * * * *
2727514 AAACCAAAGCATCAATAT-ATTGTATCCTTATGAGAA-GACA-AAGTGTATGGTGCCTAATCGT-
1 -AACCAAAGCATCAATATCA-TGTATCCTAATGA-AAGGA-ATATGTTTATGCTTCCTAAT-GTC
* *
2727575 GAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTACTTAAGAGATAAACTTTACCTCTA
61 GAAAAGAATGGAGATT-GCATGACAATTCATGTTTGTCTTACTTAAGAGATAAACTTTA-CTTTA
*
2727640 TCAAAAACAGCGGAAAGAAAACATTTTCTTGTG
124 TCAAAAACGGCGGAAAGAAAACATTTTCTTGTG
** ** * *
2727673 CCCCCAAAGCATCAACGTCATGTATCCTAATGAAGGGAATATGCTTT-TGCTTCTTAATGTCGAA
1 -AACCAAAGCATCAATATCATGTATCCTAATGAAAGGAATATG-TTTATGCTTCCTAATGTCGAA
** * * * * * * * *
2727737 AA-AAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGA-AGAATTTTGA-TATTA
64 AAGAA-TGGAGA-TTGCATGACAATTCATGTTTGTCTTACTTAAGAGATA-AACTTT-ACT-TTA
*** * * * * **
2727799 AGGAAAACAGTGCAAAGAAAAGA-TTTCAACG-G
124 TCAAAAACGGCGGAAAGAAAACATTTTC-TTGTG
** * * * * * * * **
2727831 AAAAGAAAACAATCAATATCGTTTATCCTAAAG-AAGAGAATGTGCTTATAG-TGCCTAATCAC-
1 -AACCAAAGC-ATCAATATCATGTATCCTAATGAAAG-GAATATGTTTAT-GCTTCCTAATGTCG
* * * * * * * ** *
2727893 AAAATGAATGAAG-TT-CATTACTAGAATCCTCGTTTGTCTCATTTGAG-GCACGAACTTAGACT
62 AAAA-GAATGGAGATTGCATGAC-A-ATTCAT-GTTTGTCTTACTTAAGAG-ATAAACTT-TACT
* * * * * **
2727955 TTA-CAAAAAATGGTGGCAAGAAAGC-CTTTCTTACG
121 TTATC-AAAAACGGCGGAAAGAAAACATTTTCTTGTG
* * * * *
2727990 AAACCAAAGCATCAATAT-AGTGTATCCTTATGAGAA-GACA-AAGTGTATGGTGCCTAATCGT-
1 -AACCAAAGCATCAATATCA-TGTATCCTAATGA-AAGGA-ATATGTTTATGCTTCCTAAT-GTC
* *
2728051 GAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTACTTAAGAGATAAACTTTACCTCTA
61 GAAAAGAATGGAGATT-GCATGACAATTCATGTTTGTCTTACTTAAGAGATAAACTTTA-CTTTA
*
2728116 TCAAAAACAGCGGAAAGAAAACATTTTCTTGTG
124 TCAAAAACGGCGGAAAGAAAACATTTTCTTGTG
** ** * *
2728149 CCCCCAAAGCATCAACGTCATGTATCCTAATGAAGGGAATATGCTTT-TGCTTCTTAATGTCGAA
1 -AACCAAAGCATCAATATCATGTATCCTAATGAAAGGAATATG-TTTATGCTTCCTAATGTCGAA
** * * * * * * * *
2728213 AA-AAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGA-AGAATTTTGA-TATTA
64 AAGAA-TGGAGA-TTGCATGACAATTCATGTTTGTCTTACTTAAGAGATA-AACTTT-ACT-TTA
*** * * * * **
2728275 AGGAAAACAGTGCAAAGAAAAGA-TTTCAACG-G
124 TCAAAAACGGCGGAAAGAAAACATTTTC-TTGTG
** * * * * * * **
2728307 AAAAGAAAACAATCAATATCGTTTATCCTAATG-AAGACAATGTGTTTATAG-TGCCTAATCAC-
1 -AACCAAAGC-ATCAATATCATGTATCCTAATGAAAG-GAATATGTTTAT-GCTTCCTAATGTCG
** * * * * * * * * ** *
2728369 AATATTAATGAAG-TT-CATTACTAGAATCCTCGTTTGTGTCATTTGAG-GCACGAACTTAGACT
62 AA-AAGAATGGAGATTGCATGAC-A-ATTCAT-GTTTGTCTTACTTAAGAG-ATAAACTT-TACT
* * * * * **
2728431 TTA-CAAAAAATGGTGGCAAGAAAAC-CTTCCTTACG
121 TTATC-AAAAACGGCGGAAAGAAAACATTTTCTTGTG
* * * * *
2728466 AAACCAAAGCATCAATAT-AGTGTATCCTTATGAGAA-GACA-AAGTTTATGGTGCCTAATCAT-
1 -AACCAAAGCATCAATATCA-TGTATCCTAATGA-AAGGA-ATATGTTTATGCTTCCTAAT-GTC
* * * *
2728527 GAAAAGAATGGGGATTAGCATGACAATTCTTGTTTGTCTTATTTAAGAGACAAACTTTACTTCTA
61 GAAAAGAATGGAGATT-GCATGACAATTCATGTTTGTCTTACTTAAGAGATAAACTTTACTT-TA
* * *
2728592 TCAAAAACGGTGGAAAGAACACATTTTCTTGCAG
124 TCAAAAACGGCGGAAAGAAAACATTTTCTTG-TG
* ** * *
2728626 CACCAAAGCATCAATGCCATGTATCCTAATGAAAGGAATATGCTTT-TGCTTCCTATTCTCGAAA
1 AACCAAAGCATCAATATCATGTATCCTAATGAAAGGAATATG-TTTATGCTTCCTAATGTCGAAA
** * * * * * * * *
2728690 A-AAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGA-AGAATTTTGA-TATTGA
65 AGAA-TGGAGA-TTGCATGACAATTCATGTTTGTCTTACTTAAGAGATA-AACTTT-ACT-TT-A
** * * * * * *
2728752 -GGAAAACAGTGCAAAGAAAAGA-TTTC-AGCG
124 TCAAAAACGGCGGAAAGAAAACATTTTCTTGTG
** * * * * * **
2728782 AAAAAGAAAACAATCAATATCGTTTATCCTAATG-AAGAGAATGTGTTTATAG-TGCCTAATCAC
1 --AACCAAAGC-ATCAATATCATGTATCCTAATGAAAG-GAATATGTTTAT-GCTTCCTAATGTC
* * * * * * * ** *
2728845 -AAAATGAATGAAG-TT-CATTACTAGAATCCTCGTTTGTCTCATTTGAG-GCACGAACTTAGAC
61 GAAAA-GAATGGAGATTGCATGAC-A-ATTCAT-GTTTGTCTTACTTAAGAG-ATAAACTT-TAC
* * * * * **
2728906 TTTA-CAAAAAATGGTGGCAAGAAAAC-CTTCCTTACG
120 TTTATC-AAAAACGGCGGAAAGAAAACATTTTCTTGTG
* * * * * *
2728942 AAACCAAAGCATCAATAT-AGTGTATCCTTATGAGAGGACA-AAGTTTATGGTGCCTAATCAT-G
1 -AACCAAAGCATCAATATCA-TGTATCCTAATGAAAGGA-ATATGTTTATGCTTCCTAAT-GTCG
* * * *
2729004 AAAAGAATGGGGATTAGCATGACAATTCTTGTTTGTCTTATTTAAGAGACAAACTTTACTTCTAT
62 AAAAGAATGGAGATT-GCATGACAATTCATGTTTGTCTTACTTAAGAGATAAACTTTACTT-TAT
* * *
2729069 CAAAAACGGTGGAAAGAACACATTTTCTTGCAG
125 CAAAAACGGCGGAAAGAAAACATTTTCTTG-TG
* ** * *
2729102 CACCAAAGCATCAATGCCATGTATCCTAATGAAAGGAATATGCTTT-TGCTTCCTATTCTCGAAA
1 AACCAAAGCATCAATATCATGTATCCTAATGAAAGGAATATG-TTTATGCTTCCTAATGTCGAAA
** * * * * * * * *
2729166 A-AAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGA-AGAATTTTGA-TATTGA
65 AGAA-TGGAGA-TTGCATGACAATTCATGTTTGTCTTACTTAAGAGATA-AACTTT-ACT-TT-A
** * * * * * *
2729228 -GGAAAACAGTGCAAAGAAAAGA-TTTC-AGCG
124 TCAAAAACGGCGGAAAGAAAACATTTTCTTGTG
** * * * * * **
2729258 AAAAAGAAAACAATCAATATCGTTTATCCTAATG-AAGAGAATGTGTTTATAG-TGCCTAATCAC
1 --AACCAAAGC-ATCAATATCATGTATCCTAATGAAAG-GAATATGTTTAT-GCTTCCTAATGTC
* * * * * * * ** *
2729321 -AAAATGAATGAAG-TT-CATTACTAGAATCCTCGTTTGTCTCATTTGAG-GCACGAACTTAGAC
61 GAAAA-GAATGGAGATTGCATGAC-A-ATTCAT-GTTTGTCTTACTTAAGAG-ATAAACTT-TAC
* * * * * **
2729382 TTTA-CAAAAAATGGTGGCAAGAAAAC-CTTCCTTACG
120 TTTATC-AAAAACGGCGGAAAGAAAACATTTTCTTGTG
* * * * * *
2729418 AAACCAAAGCATCAATAT-AGTGTATCCTTATGAGAGGACA-AAGTTTATGGTGCCTAATCAT-G
1 -AACCAAAGCATCAATATCA-TGTATCCTAATGAAAGGA-ATATGTTTATGCTTCCTAAT-GTCG
* * * *
2729480 AAAAGAATGGGGATTAGCATGACAATTCTTGTTTGTCTTATTTAAGAGACAAACTTTACTTCTAT
62 AAAAGAATGGAGATT-GCATGACAATTCATGTTTGTCTTACTTAAGAGATAAACTTTACTT-TAT
* * *
2729545 CAAAAACGGTGGAAAGAACACATTTTCTTGCAG
125 CAAAAACGGCGGAAAGAAAACATTTTCTTG-TG
* ** * *
2729578 CACCAAAGCATCAATGCCATGTATCCTAATGAAAGGAATATGCTTT-TGCTTCCTATTCTCGAAA
1 AACCAAAGCATCAATATCATGTATCCTAATGAAAGGAATATG-TTTATGCTTCCTAATGTCGAAA
** * * * * * * * *
2729642 A-AAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGA-AGAATTTTGA-TATTGA
65 AGAA-TGGAGA-TTGCATGACAATTCATGTTTGTCTTACTTAAGAGATA-AACTTT-ACT-TT-A
** * * * * * *
2729704 -GGAAAACAGTGCAAAGAAAAGA-TTTC-AGCGG
124 TCAAAAACGGCGGAAAGAAAACATTTTCTTG-TG
** * * * * * **
2729735 AAAAGAAAACAATCAATATCGTTTATCCTAATG-AAGAGAATGTGTTTATAG-TGCCTAATCAC-
1 -AACCAAAGC-ATCAATATCATGTATCCTAATGAAAG-GAATATGTTTAT-GCTTCCTAATGTCG
* * * * * * * ** *
2729797 AAAATGAATGAAG-TT-CATTACTAGAATCCTCGTTTGTCTCATTTGAG-GCACGAACTTAGACT
62 AAAA-GAATGGAGATTGCATGAC-A-ATTCAT-GTTTGTCTTACTTAAGAG-ATAAACTT-TACT
* * * * **
2729859 TTA-CAAAAAATGGTGGCAAGAAAAC-CTTTCTTACG
121 TTATC-AAAAACGGCGGAAAGAAAACATTTTCTTGTG
* * ** * * * *
2729894 AATCCAAAGCATTAATAT-AGTGCATCCTTTTGAGAA-GACA-AAGTTTATGGTGCCTAATCAT-
1 AA-CCAAAGCATCAATATCA-TGTATCCTAATGA-AAGGA-ATATGTTTATGCTTCCTAAT-GTC
* * * *
2729955 GAAAAGAATGGGGATTAGCATGACAATTCTTGTTTGTCTTATTTAAGAGACAAACTTTACTTCTA
61 GAAAAGAATGGAGATT-GCATGACAATTCATGTTTGTCTTACTTAAGAGATAAACTTTACTT-TA
* * *
2730020 TCAAAAACGGTGGAAAGAACACATTTTCTTGCAG
124 TCAAAAACGGCGGAAAGAAAACATTTTCTTG-TG
* ** *
2730054 CACCAAAGCATCAATGCCATGTATCCTAATGAAAGGAATATGCTTT-TGCTTCCTAATCTCGAAA
1 AACCAAAGCATCAATATCATGTATCCTAATGAAAGGAATATG-TTTATGCTTCCTAATGTCGAAA
* ** * * * * * * * * *
2730118 A-AAGTGTAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGA-AGAATTTTGA-TATTAA
65 AGAA-TGGAGA-TTGCATGACAATTCATGTTTGTCTTACTTAAGAGATA-AACTTT-ACT-TTAT
** * * * * * ****
2730180 GGAAAACAGTGCAGAGAAAAGA-TTTCAACAG
125 CAAAAACGGCGGAAAGAAAACATTTTCTTGTG
** * * * * * **
2730211 AAAAGAAAACAATCAATATCGTTTATCCTAATG-AAGAGAATGTGTTTATAG-TGCCTAATCAC-
1 -AACCAAAGC-ATCAATATCATGTATCCTAATGAAAG-GAATATGTTTAT-GCTTCCTAATGTCG
* * * * * * ** *
2730273 AAAATGAACGAAGA-T-CATTACTAGAATCCTCAT-TTT-TCTCATTTGAG-GCACGAACTTAGA
62 AAAA-GAATGGAGATTGCATGAC---AAT--TCATGTTTGTCTTACTTAAGAG-ATAAACTT-TA
* * * * * **
2730333 CTTTA-CAAAAATTGGTGGCAAGAAAGC-CTTTCTTACG
119 CTTTATCAAAAA-CGGCGGAAAGAAAACATTTTCTTGTG
** * * *
2730370 AAACCAAAGCATCAATAT-ATTGTATCCTTCTGAGAA-GACA-AAGTTTATGGTGCCTAATCGT-
1 -AACCAAAGCATCAATATCA-TGTATCCTAATGA-AAGGA-ATATGTTTATGCTTCCTAAT-GTC
*
2730431 GAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTACTTAAGAGATAAACTTTACTTCTA
61 GAAAAGAATGGAGATT-GCATGACAATTCATGTTTGTCTTACTTAAGAGATAAACTTTACTT-TA
* *
2730496 TCAAAAACGACGAAAAGAAAACATTTTCTTGTG
124 TCAAAAACGGCGGAAAGAAAACATTTTCTTGTG
** *
2730529 CCCCCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATATGCTTT-TGCTTCCTAATGTCGAA
1 -AACCAAAGCATCAATATCATGTATCCTAATGAAAGGAATATG-TTTATGCTTCCTAATGTCGAA
** * * * * * * * *
2730593 AA-AAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGA-AGAATTTTGA-TATTG
64 AAGAA-TGGAGA-TTGCATGACAATTCATGTTTGTCTTACTTAAGAGATA-AACTTT-ACT-TT-
** * * * * ****
2730655 A-GGAAAACAGTGCAAAGAAAAGA-TTTCAACAG
123 ATCAAAAACGGCGGAAAGAAAACATTTTCTTGTG
** * * * * *** * **
2730687 AAAAGAAAACAATCAATATCGTTTATCCTAATGAAGGGAATGCCTTTATAG-TGCCTAATCAC-A
1 -AACCAAAGC-ATCAATATCATGTATCCTAATGAAAGGAATATGTTTAT-GCTTCCTAATGTCGA
* * * * * * * ** * *
2730750 AAATGAATGAAGA-T-CATTACTAAAATCCTCGTTTGTCTCATTTGAG-GCACGAACTTAGATTT
63 AAA-GAATGGAGATTGCATGAC--AATTCAT-GTTTGTCTTACTTAAGAG-ATAAACTT-TACTT
* * * ** * **
2730812 TA-CAAAAATTGGTGGCAAGAAGGC-CTTTCTTACG
122 TATCAAAAA-CGGCGGAAAGAAAACATTTTCTTGTG
* * *
2730846 AAACCAAAGCATCAATAT-ATTGTATCCCT-ATGAGAA-GACA-AAGTTTATGGTGCCTAATCGT
1 -AACCAAAGCATCAATATCA-TGTAT-CCTAATGA-AAGGA-ATATGTTTATGCTTCCTAAT-GT
* *
2730907 -GAAAAGAATGGGGATTAGCATGACAATTCATGTTTG-CTTATTTAAGAGATAAACTTTACTTCT
60 CGAAAAGAATGGAGATT-GCATGACAATTCATGTTTGTCTTACTTAAGAGATAAACTTTACTT-T
*
2730970 ATCAAAAACGGCGAAAAGAAAACATTTTCTTGTG
123 ATCAAAAACGGCGGAAAGAAAACATTTTCTTGTG
* * * * * *
2731004 ACCCCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCCT-TGC-TCCCAATCTCGA
1 A-ACCAAAGCATCAATATCATGTATCCTAATGAAAGGAATATGTT--TATGCTTCCTAATGTCGA
2731067 AAAGAATGGAGA
63 AAAGAATGGAGA
2731079 CTATTATCAG
Statistics
Matches: 3067, Mismatches: 907, Indels: 768
0.65 0.19 0.16
Matches are distributed among these distances:
156 36 0.01
157 101 0.03
158 985 0.32
159 1755 0.57
160 142 0.05
161 48 0.02
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.29
Consensus pattern (156 bp):
AACCAAAGCATCAATATCATGTATCCTAATGAAAGGAATATGTTTATGCTTCCTAATGTCGAAAA
GAATGGAGATTGCATGACAATTCATGTTTGTCTTACTTAAGAGATAAACTTTACTTTATCAAAAA
CGGCGGAAAGAAAACATTTTCTTGTG
Found at i:2727279 original size:476 final size:476
Alignment explanation
Indices: 2726387--2731507 Score: 8490
Period size: 476 Copynumber: 10.8 Consensus size: 476
2726377 AGACTCTTAT
** * * * *
2726387 GAAAAGATTTCAATGGAAAAGAAAATC-GTTAATATCGTTTATCCTAATGAGGGGAATGTGTTTA
1 GAAAAGATTTCAACAGAAAAGAAAA-CAATCAATATCGTTTATCCTAATGAAGAGAATGTGTTTA
2726451 TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCAC
65 TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCAC
*
2726516 GAACTTAGACTTTACAAAAAATGGTGGTAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATA
130 GAACTTAGACTTTACAAAAAATGGTGGCAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATA
2726581 GTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGA
195 GTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGA
*
2726646 CAATTCATGTTTGTCTTACTTAAGAGATAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACA
260 CAATTCATGTTTGTCTTATTTAAGAGATAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACA
* * *
2726711 TTTTCTTGTGCCCCTAAAGCATCAATATCACGTATCCTAATGAAAGGAATATGCTTTTGCTTCCT
325 TTTTCTTGTGCCCCCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATATGCTTTTGCTTCCT
* *
2726776 AATGTCGAAAAAAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTGAGGGAAGAATTTTG
390 AATCTCGAAAAAAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTG
*
2726841 ATATTAAGAAAAACAGTGCAAA
455 ATATTAAGGAAAACAGTGCAAA
2726863 GAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAGAATGTGTTTAT
1 GAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAGAATGTGTTTAT
2726928 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACG
66 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACG
* * *
2726993 AACTTAGACTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAGCATCAATATAT
131 AACTTAGACTTTACAAAAAATGGTGGCAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATAG
* *
2727058 TGTATCCTTATGAGAAGACAAAGTTTATGGTCCCTAATCGTGAAAAGAATGGGGATTAGCATGAC
196 TGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGAC
*
2727123 AATTCATGTTTGTCTTACTTAAGAGATAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACAT
261 AATTCATGTTTGTCTTATTTAAGAGATAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACAT
*
2727188 TTTCTTGTGCCCCCAAAGCATCAATGTCGTGTATCCTAATGAAAGGAATATGCTTTTGCTTCCTA
326 TTTCTTGTGCCCCCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATATGCTTTTGCTTCCTA
*
2727253 ATGTCGAAAAAAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGA
391 ATCTCGAAAAAAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGA
2727318 TATTAAGGAAAACAGTGCAAA
456 TATTAAGGAAAACAGTGCAAA
*
2727339 GAAAAGATTTCAACAGAAAAGAAAATAATCAATATCGTTTATCCTAATGAAGAGAATGTGTTTAT
1 GAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAGAATGTGTTTAT
* * *
2727404 AGTGCCTAATCACAAAAAGAATGAAGATCATTACTAGAATCCTCATTTGTCTCATTTGAGGCATG
66 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACG
* * * *
2727469 AACTTAGACTTTACAAAAATTGGTGGCAAGAAGGTCTTTCTTACGAAACCAAAGCATCAATATAT
131 AACTTAGACTTTACAAAAAATGGTGGCAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATAG
* *
2727534 TGTATCCTTATGAGAAGACAAAGTGTATGGTGCCTAATCGTGAAAAGAATGGGGATTAGCATGAC
196 TGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGAC
* * *
2727599 AATTCATGTTTGTCTTACTTAAGAGATAAACTTTACCTCTATCAAAAACAGCGGAAAGAAAACAT
261 AATTCATGTTTGTCTTATTTAAGAGATAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACAT
* * *
2727664 TTTCTTGTGCCCCCAAAGCATCAACGTCATGTATCCTAATGAAGGGAATATGCTTTTGCTTCTTA
326 TTTCTTGTGCCCCCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATATGCTTTTGCTTCCTA
*
2727729 ATGTCGAAAAAAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGA
391 ATCTCGAAAAAAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGA
2727794 TATTAAGGAAAACAGTGCAAA
456 TATTAAGGAAAACAGTGCAAA
* * *
2727815 GAAAAGATTTCAACGGAAAAGAAAACAATCAATATCGTTTATCCTAAAGAAGAGAATGTGCTTAT
1 GAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAGAATGTGTTTAT
*
2727880 AGTGCCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACG
66 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACG
2727945 AACTTAGACTTTACAAAAAATGGTGGCAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATAG
131 AACTTAGACTTTACAAAAAATGGTGGCAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATAG
* *
2728010 TGTATCCTTATGAGAAGACAAAGTGTATGGTGCCTAATCGTGAAAAGAATGGGGATTAGCATGAC
196 TGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGAC
* * *
2728075 AATTCATGTTTGTCTTACTTAAGAGATAAACTTTACCTCTATCAAAAACAGCGGAAAGAAAACAT
261 AATTCATGTTTGTCTTATTTAAGAGATAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACAT
* * *
2728140 TTTCTTGTGCCCCCAAAGCATCAACGTCATGTATCCTAATGAAGGGAATATGCTTTTGCTTCTTA
326 TTTCTTGTGCCCCCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATATGCTTTTGCTTCCTA
*
2728205 ATGTCGAAAAAAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGA
391 ATCTCGAAAAAAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGA
2728270 TATTAAGGAAAACAGTGCAAA
456 TATTAAGGAAAACAGTGCAAA
* *
2728291 GAAAAGATTTCAACGGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGACAATGTGTTTAT
1 GAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAGAATGTGTTTAT
* * * *
2728356 AGTGCCTAATCACAATATTAATGAAGTTCATTACTAGAATCCTCGTTTGTGTCATTTGAGGCACG
66 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACG
* *
2728421 AACTTAGACTTTACAAAAAATGGTGGCAAGAAAACCTTCCTTACGAAACCAAAGCATCAATATAG
131 AACTTAGACTTTACAAAAAATGGTGGCAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATAG
2728486 TGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGAC
196 TGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGAC
* * * *
2728551 AATTCTTGTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGTGGAAAGAACACAT
261 AATTCATGTTTGTCTTATTTAAGAGATAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACAT
* * *
2728616 TTTCTTGCAG-CACCAAAGCATCAATGCCATGTATCCTAATGAAAGGAATATGCTTTTGCTTCCT
326 TTTCTTG-TGCCCCCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATATGCTTTTGCTTCCT
*
2728680 ATTCTCGAAAAAAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTG
390 AATCTCGAAAAAAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTG
*
2728745 ATATTGAGGAAAACAGTGCAAA
455 ATATTAAGGAAAACAGTGCAAA
*
2728767 GAAAAGATTTCAGC-GAAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAGAATGTGTTTA
1 GAAAAGATTTCAACAG-AAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAGAATGTGTTTA
*
2728831 TAGTGCCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCAC
65 TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCAC
* *
2728896 GAACTTAGACTTTACAAAAAATGGTGGCAAGAAAACCTTCCTTACGAAACCAAAGCATCAATATA
130 GAACTTAGACTTTACAAAAAATGGTGGCAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATA
*
2728961 GTGTATCCTTATGAGAGGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGA
195 GTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGA
* * * *
2729026 CAATTCTTGTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGTGGAAAGAACACA
260 CAATTCATGTTTGTCTTATTTAAGAGATAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACA
* * *
2729091 TTTTCTTGCAG-CACCAAAGCATCAATGCCATGTATCCTAATGAAAGGAATATGCTTTTGCTTCC
325 TTTTCTTG-TGCCCCCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATATGCTTTTGCTTCC
*
2729155 TATTCTCGAAAAAAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTT
389 TAATCTCGAAAAAAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTT
*
2729220 GATATTGAGGAAAACAGTGCAAA
454 GATATTAAGGAAAACAGTGCAAA
*
2729243 GAAAAGATTTCAGC-GAAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAGAATGTGTTTA
1 GAAAAGATTTCAACAG-AAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAGAATGTGTTTA
*
2729307 TAGTGCCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCAC
65 TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCAC
* *
2729372 GAACTTAGACTTTACAAAAAATGGTGGCAAGAAAACCTTCCTTACGAAACCAAAGCATCAATATA
130 GAACTTAGACTTTACAAAAAATGGTGGCAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATA
*
2729437 GTGTATCCTTATGAGAGGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGA
195 GTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGA
* * * *
2729502 CAATTCTTGTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGTGGAAAGAACACA
260 CAATTCATGTTTGTCTTATTTAAGAGATAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACA
* * *
2729567 TTTTCTTGCAG-CACCAAAGCATCAATGCCATGTATCCTAATGAAAGGAATATGCTTTTGCTTCC
325 TTTTCTTG-TGCCCCCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATATGCTTTTGCTTCC
*
2729631 TATTCTCGAAAAAAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTT
389 TAATCTCGAAAAAAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTT
*
2729696 GATATTGAGGAAAACAGTGCAAA
454 GATATTAAGGAAAACAGTGCAAA
* *
2729719 GAAAAGATTTCAGCGGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAGAATGTGTTTAT
1 GAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAGAATGTGTTTAT
*
2729784 AGTGCCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACG
66 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACG
* * *
2729849 AACTTAGACTTTACAAAAAATGGTGGCAAGAAAACCTTTCTTACGAATCCAAAGCATTAATATAG
131 AACTTAGACTTTACAAAAAATGGTGGCAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATAG
* *
2729914 TGCATCCTTTTGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGAC
196 TGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGAC
* * * *
2729979 AATTCTTGTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGTGGAAAGAACACAT
261 AATTCATGTTTGTCTTATTTAAGAGATAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACAT
* * *
2730044 TTTCTTGCAG-CACCAAAGCATCAATGCCATGTATCCTAATGAAAGGAATATGCTTTTGCTTCCT
326 TTTCTTG-TGCCCCCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATATGCTTTTGCTTCCT
*
2730108 AATCTCGAAAAAAGTGTAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTG
390 AATCTCGAAAAAAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTG
*
2730173 ATATTAAGGAAAACAGTGCAGA
455 ATATTAAGGAAAACAGTGCAAA
2730195 GAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAGAATGTGTTTAT
1 GAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAGAATGTGTTTAT
* * *
2730260 AGTGCCTAATCACAAAATGAACGAAGATCATTACTAGAATCCTCATTTTTCTCATTTGAGGCACG
66 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACG
* *
2730325 AACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATAT
131 AACTTAGACTTTACAAAAAATGGTGGCAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATAG
* *
2730390 TGTATCCTTCTGAGAAGACAAAGTTTATGGTGCCTAATCGTGAAAAGAATGGGGATTAGCATGAC
196 TGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGAC
* * *
2730455 AATTCATGTTTGTCTTACTTAAGAGATAAACTTTACTTCTATCAAAAACGACGAAAAGAAAACAT
261 AATTCATGTTTGTCTTATTTAAGAGATAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACAT
2730520 TTTCTTGTGCCCCCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATATGCTTTTGCTTCCTA
326 TTTCTTGTGCCCCCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATATGCTTTTGCTTCCTA
*
2730585 ATGTCGAAAAAAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGA
391 ATCTCGAAAAAAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGA
*
2730650 TATTGAGGAAAACAGTGCAAA
456 TATTAAGGAAAACAGTGCAAA
* **
2730671 GAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGGGAATGCCTTTAT
1 GAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAGAATGTGTTTAT
*
2730736 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAAAATCCTCGTTTGTCTCATTTGAGGCACG
66 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACG
* * * *
2730801 AACTTAGATTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAGCATCAATATAT
131 AACTTAGACTTTACAAAAAATGGTGGCAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATAG
* *
2730866 TGTATCCCTATGAGAAGACAAAGTTTATGGTGCCTAATCGTGAAAAGAATGGGGATTAGCATGAC
196 TGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGAC
*
2730931 AATTCATGTTTG-CTTATTTAAGAGATAAACTTTACTTCTATCAAAAACGGCGAAAAGAAAACAT
261 AATTCATGTTTGTCTTATTTAAGAGATAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACAT
* * *
2730995 TTTCTTGTGACCCCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTCCTTGC-TCC
326 TTTCTTGTGCCCCCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATATGCTT--TTGCTTCC
* * * * * * * *
2731058 CAATCTCGAAAAGAA-TGGAGACTATTATCAGAATCGATGCTTTTCATAATTATGGGATGAATTT
389 TAATCTCGAAAA-AAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTT
** * * *
2731122 TGAT-TTTTGTTAAAATAGGGCAAA
453 TGATATTAAG-GAAAACAGTGCAAA
* * * *
2731146 GAAAAGATTTC--CATGCAAAAGAAAATC-GTGAATATTGTTTATCCTAATGAAAAGAATGTGTT
1 GAAAAGATTTCAACA-G-AAAAGAAAA-CAATCAATATCGTTTATCCTAATGAAGAGAATGTGTT
* *
2731208 TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCCCGTTTGTATCATTTGAGGC
63 TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGC
* * * *
2731273 ACAAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCTTTTCTTACGGAACCAAAGCATCAATA
128 ACGAACTTAGACTTTACAAAAAATGGTGGCAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATA
* * *
2731338 TAGTGTATCCTTCTGAGAAGACAAAGTTTATGGTGCCTGATCACGAAAAGAATGGGGATTAGCAT
193 TAGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCAT
* * *
2731403 GACAATTCATGTTTGTCTTATTTAAGAGATAAACTTCACTTCTATCAAAACCGGTGGAAAGAAAA
258 GACAATTCATGTTTGTCTTATTTAAGAGATAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAA
2731468 CATTTTCTTGTGCCCCCAAAGCATCAATGTCATGTATCCT
323 CATTTTCTTGTGCCCCCAAAGCATCAATGTCATGTATCCT
2731508 GAAATCTTAT
Statistics
Matches: 4463, Mismatches: 169, Indels: 26
0.96 0.04 0.01
Matches are distributed among these distances:
473 2 0.00
474 6 0.00
475 416 0.09
476 4037 0.90
477 2 0.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (476 bp):
GAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAGAATGTGTTTAT
AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACG
AACTTAGACTTTACAAAAAATGGTGGCAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATAG
TGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGAC
AATTCATGTTTGTCTTATTTAAGAGATAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACAT
TTTCTTGTGCCCCCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATATGCTTTTGCTTCCTA
ATCTCGAAAAAAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGA
TATTAAGGAAAACAGTGCAAA
Found at i:2733396 original size:159 final size:157
Alignment explanation
Indices: 2733214--2734829 Score: 424
Period size: 159 Copynumber: 10.2 Consensus size: 157
2733204 AGAAGACAAA
*
2733214 GTTTATGGTGCCTAATCAT-GAAAAGAATGGGGATTAGCATGACAATTCTTGTTTGTCTTATTTA
1 GTTTATGCTGCCTAATC-TCGAAAAGAATGGGGATTAGCATGACAATTCTTGTTTGTCTTATTTA
* *
2733278 AGAGACAAACTTTACTTCTATCAAAAACGGTGGAAAGAACACATTTTCTTGCAGCACCAAAGCAT
65 AGAGACAAACTTTACTT-TA-CAAAAACGGTGGAAAGAAAACATTTTCTTGCAGAACCAAAGCAT
2733343 CAATGCCATGTATCCTAATGAAAGGAATAT
128 CAATGCCATGTATCCTAATGAAAGGAATAT
* * * ** * * ** * *
2733373 GCTTT-TGCTTCCTATTCTCGAAAA-AAGTGGAGACTT-TTATAAGAATTGATGCTTGTCATATT
1 G-TTTATGCTGCCTAATCTCGAAAAGAA-TGGGGA-TTAGCATGACAATTCTTGTTTGTCTTATT
* * ** * * * * * **
2733435 TAAGGGA-AGAATTTTGA-TATTGAGGAAAACAGTGCAAAGAAAAGA-TTTC-AGCGGAAAAGAA
63 TAAGAGACA-AACTTT-ACT-TT-ACAAAAACGGTGGAAAGAAAACATTTTCTTGCAG-AACCAA
* ** * * *
2733496 AACAATCAATATCGTTTATCCTAATG-AAGAGAATGT
123 AGC-ATCAATGCCATGTATCCTAATGAAAG-GAATAT
* ** * * * *
2733532 GTTTATAG-TGCCTAATCAC-AAAATGAATGAAGTTCATTA-C-T-AGAATCCTCGTTTGTCTCA
1 GTTTAT-GCTGCCTAATCTCGAAAA-GAATG--G-GGATTAGCATGACAATTCTTGTTTGTCTTA
* * * * * * *
2733592 TTTGAG-GCACGAACTTAGACTTTACAAAAAATGGTGGCAAGAAAAC-CTTTCTTAC-GAATCCA
61 TTTAAGAG-ACAAACTT-TACTTTAC-AAAAACGGTGGAAAGAAAACATTTTCTTGCAGAA-CCA
* ** * ** *
2733654 AAGCATTAAT-ATAGTGCATCCTTTTGAGAA-GACA-AA
122 AAGCATCAATGCCA-TGTATCCTAATGA-AAGGA-ATAT
*
2733690 GTTTATGGTGCCTAATCAT-GAAAAGAATGGGGATTAGCATGACAATTCTTGTTTGTCTTATTTA
1 GTTTATGCTGCCTAATC-TCGAAAAGAATGGGGATTAGCATGACAATTCTTGTTTGTCTTATTTA
* *
2733754 AGAGACAAACTTTACTTCTATCAAAAACGGTGGAAAGAACACATTTTCTTGCAGCACCAAAGCAT
65 AGAGACAAACTTTACTT-TA-CAAAAACGGTGGAAAGAAAACATTTTCTTGCAGAACCAAAGCAT
2733819 CAATGCCATGTATCCTAATGAAAGGAATAT
128 CAATGCCATGTATCCTAATGAAAGGAATAT
* ** ** * * ** * *
2733849 GCTTT-TGCTTCCTAATCTCGAAAA-AAGTGTAGACTT-TTATAAGAATTGATGCTTGTCATATT
1 G-TTTATGCTGCCTAATCTCGAAAAGAA-TGGGGA-TTAGCATGACAATTCTTGTTTGTCTTATT
* * * * * * ** **
2733911 TAAGGGA-AGAATTTTGA-TATTA-AGGAAAACAGTGCAGAGAAAAGA-TTTC-AACAGAAAAGA
63 TAAGAGACA-AACTTT-ACT-TTACA--AAAACGGTGGAAAGAAAACATTTTCTTGCAG-AACCA
* ** * * *
2733971 AAACAATCAATATCGTTTATCCTAATG-AAGAGAATGT
122 AAGC-ATCAATGCCATGTATCCTAATGAAAG-GAATAT
* * ** * ** * * * * *
2734008 GTTTATAG-TGCCTAATCAC-AAAATGAACGAAGATCATTACT-AGAATCCTCGTTTTTCTCATT
1 GTTTAT-GCTGCCTAATCTCGAAAA-GAATGGGGATTAGCA-TGACAATTCTTGTTTGTCTTATT
* * * * * * * *
2734070 TGAG-GCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGC-CTTTCTTAC-GAAACCAAA
63 TAAGAG-ACAAACTT-TACTTTACAAAAA-CGGTGGAAAGAAAACATTTTCTTGCAG-AACCAAA
** ** *
2734132 GCATCAAT-ATATTGTATCCTTCTGAGAA-GACA-AA
124 GCATCAATGCCA-TGTATCCTAATGA-AAGGA-ATAT
* * *
2734166 GTTTATGGTGCCTAATCGT-GAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTACTTA
1 GTTTATGCTGCCTAATC-TCGAAAAGAATGGGGATTAGCATGACAATTCTTGTTTGTCTTATTTA
* ** * * **
2734230 AGAGATAAACTTTACTTCTATCAAAAACGACGAAAAGAAAACATTTTCTTG-TGCCCCCAAAGCA
65 AGAGACAAACTTTACTT-TA-CAAAAACGGTGGAAAGAAAACATTTTCTTGCAG-AACCAAAGCA
*
2734294 TCAATGTCATGTATCCTAATGAAAGGAATAT
127 TCAATGCCATGTATCCTAATGAAAGGAATAT
* * * ** * * ** * *
2734325 GCTTT-TGCTTCCTAATGTCGAAAA-AAGTGGAGACTT-TTATAAGAATTGATGCTTGTCATATT
1 G-TTTATGCTGCCTAATCTCGAAAAGAA-TGGGGA-TTAGCATGACAATTCTTGTTTGTCTTATT
* * ** * * * ** **
2734387 TAAGGGA-AGAATTTTGA-TATTGAGGAAAACAGTGCAAAGAAAAGA-TTTC-AACAGAAAAGAA
63 TAAGAGACA-AACTTT-ACT-TT-ACAAAAACGGTGGAAAGAAAACATTTTCTTGCAG-AACCAA
* ** * * * **
2734448 AACAATCAATATCGTTTATCCTAATGAAGGGAATGC
123 AGC-ATCAATGCCATGTATCCTAATGAAAGGAATAT
* * ** * ** * * * *
2734484 CTTTATAG-TGCCTAATCAC-AAAATGAATGAAGATCATTACT-AAAATCCTCGTTTGTCTCATT
1 GTTTAT-GCTGCCTAATCTCGAAAA-GAATGGGGATTAGCA-TGACAATTCTTGTTTGTCTTATT
* * * * * * ** * *
2734546 TGAG-GCACGAACTTAGATTTTACAAAAATTGGTGGCAAGAAGGC-CTTTCTTAC-GAAACCAAA
63 TAAGAG-ACAAACTT-TACTTTACAAAAA-CGGTGGAAAGAAAACATTTTCTTGCAG-AACCAAA
** *
2734608 GCATCAAT-ATATTGTATCCCT-ATGAGAA-GACA-AA
124 GCATCAATGCCA-TGTAT-CCTAATGA-AAGGA-ATAT
* *
2734642 GTTTATGGTGCCTAATCGT-GAAAAGAATGGGGATTAGCATGACAATTCATGTTTG-CTTATTTA
1 GTTTATGCTGCCTAATC-TCGAAAAGAATGGGGATTAGCATGACAATTCTTGTTTGTCTTATTTA
* * * * * *
2734705 AGAGATACACTTTACTTCTATCAAAAACGGCGAAAAGAAAACATTTTCTTG-TGACCCCAAAGCA
65 AGAGACAAACTTTACTT-TA-CAAAAACGGTGGAAAGAAAACATTTTCTTGCAGA-ACCAAAGCA
* * *
2734769 TCAATGTCATGTATCCTAATGAAGGGAATGT
127 TCAATGCCATGTATCCTAATGAAAGGAATAT
*
2734800 GTTCCT-TGCT-CCCAATCTCGAAAAGAATGG
1 GTT--TATGCTGCCTAATCTCGAAAAGAATGG
2734830 AGACTATTAT
Statistics
Matches: 1025, Mismatches: 301, Indels: 263
0.65 0.19 0.17
Matches are distributed among these distances:
155 4 0.00
156 5 0.00
157 52 0.05
158 353 0.34
159 554 0.54
160 53 0.05
161 3 0.00
162 1 0.00
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.30
Consensus pattern (157 bp):
GTTTATGCTGCCTAATCTCGAAAAGAATGGGGATTAGCATGACAATTCTTGTTTGTCTTATTTAA
GAGACAAACTTTACTTTACAAAAACGGTGGAAAGAAAACATTTTCTTGCAGAACCAAAGCATCAA
TGCCATGTATCCTAATGAAAGGAATAT
Found at i:2733809 original size:476 final size:476
Alignment explanation
Indices: 2732917--2735261 Score: 3801
Period size: 476 Copynumber: 4.9 Consensus size: 476
2732907 ATAGATTTCA
2732917 AAAAAAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTGA
1 AAAAAAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTGA
*
2732982 GGAAAACAGTGCAAAGAAAAGATTTCAGCGGAAAAGAAAACAATCAATATCGTTTATCCTAATGA
66 GGAAAACAGTGCAAAGAAAAGATTTCAGCAGAAAAGAAAACAATCAATATCGTTTATCCTAATGA
*
2733047 AGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCTCGTTTGT
131 AGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGT
* * *
2733112 CTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGCAAGAAAACCTTCCTTACGAAACC
196 CTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTACGAAACC
2733177 AAAGCATCAATATAGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAAT
261 AAAGCATCAATATAGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAAT
* *
2733242 GGGGATTAGCATGACAATTCTTGTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACG
326 GGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGATAAACTTTACTTCTATCAAAAACG
* * * *
2733307 GTGGAAAGAACACATTTTCTTGCAG-CACCAAAGCATCAATGCCATGTATCCTAATGAAAGGAAT
391 GTGGAAAGAAAACATTTTCTTG-TGCCCCCAAAGCATCAATGTCATGTATCCTAATGAAAGGAAT
*
2733371 ATGCTTTTGCTTCCTATTCTCG
455 ATGCTTTTGCTTCCTAATCTCG
2733393 AAAAAAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTGA
1 AAAAAAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTGA
*
2733458 GGAAAACAGTGCAAAGAAAAGATTTCAGCGGAAAAGAAAACAATCAATATCGTTTATCCTAATGA
66 GGAAAACAGTGCAAAGAAAAGATTTCAGCAGAAAAGAAAACAATCAATATCGTTTATCCTAATGA
*
2733523 AGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCTCGTTTGT
131 AGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGT
* * *
2733588 CTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGCAAGAAAACCTTTCTTACGAATCC
196 CTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTACGAAACC
* * *
2733653 AAAGCATTAATATAGTGCATCCTTTTGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAAT
261 AAAGCATCAATATAGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAAT
* *
2733718 GGGGATTAGCATGACAATTCTTGTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACG
326 GGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGATAAACTTTACTTCTATCAAAAACG
* * * *
2733783 GTGGAAAGAACACATTTTCTTGCAG-CACCAAAGCATCAATGCCATGTATCCTAATGAAAGGAAT
391 GTGGAAAGAAAACATTTTCTTG-TGCCCCCAAAGCATCAATGTCATGTATCCTAATGAAAGGAAT
2733847 ATGCTTTTGCTTCCTAATCTCG
455 ATGCTTTTGCTTCCTAATCTCG
* *
2733869 AAAAAAGTGTAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAA
1 AAAAAAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTGA
* *
2733934 GGAAAACAGTGCAGAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGA
66 GGAAAACAGTGCAAAGAAAAGATTTCAGCAGAAAAGAAAACAATCAATATCGTTTATCCTAATGA
* *
2733999 AGAGAATGTGTTTATAGTGCCTAATCACAAAATGAACGAAGATCATTACTAGAATCCTCGTTTTT
131 AGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGT
2734064 CTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTACGAAACC
196 CTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTACGAAACC
* * *
2734129 AAAGCATCAATATATTGTATCCTTCTGAGAAGACAAAGTTTATGGTGCCTAATCGTGAAAAGAAT
261 AAAGCATCAATATAGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAAT
*
2734194 GGGGATTAGCATGACAATTCATGTTTGTCTTACTTAAGAGATAAACTTTACTTCTATCAAAAACG
326 GGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGATAAACTTTACTTCTATCAAAAACG
** *
2734259 ACGAAAAGAAAACATTTTCTTGTGCCCCCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATA
391 GTGGAAAGAAAACATTTTCTTGTGCCCCCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATA
*
2734324 TGCTTTTGCTTCCTAATGTCG
456 TGCTTTTGCTTCCTAATCTCG
2734345 AAAAAAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTGA
1 AAAAAAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTGA
*
2734410 GGAAAACAGTGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGA
66 GGAAAACAGTGCAAAGAAAAGATTTCAGCAGAAAAGAAAACAATCAATATCGTTTATCCTAATGA
* ** *
2734475 AGGGAATGCCTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAAAATCCTCGTTTGT
131 AGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGT
* *
2734540 CTCATTTGAGGCACGAACTTAGATTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACGAAACC
196 CTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTACGAAACC
* * *
2734605 AAAGCATCAATATATTGTATCCCTATGAGAAGACAAAGTTTATGGTGCCTAATCGTGAAAAGAAT
261 AAAGCATCAATATAGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAAT
*
2734670 GGGGATTAGCATGACAATTCATGTTTG-CTTATTTAAGAGATACACTTTACTTCTATCAAAAACG
326 GGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGATAAACTTTACTTCTATCAAAAACG
* * * * *
2734734 GCGAAAAGAAAACATTTTCTTGTGACCCCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATG
391 GTGGAAAGAAAACATTTTCTTGTGCCCCCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATA
*
2734799 TG-TTCCTTGC-TCCCAATCTCG
456 TGCTT--TTGCTTCCTAATCTCG
* * * * * * * *
2734820 AAAAGAA-TGGAGACTATTATCAGAATCGATGCTTTTCATAATTATGGGATGAATTTTGATTTTT
1 AAAA-AAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGA-TATT
* * * * * *
2734884 G-TGAAAATAGGGCAAAGAAAAGATTTC--CATGCAAAAGAAAATC-GTGAATATTGTTTATCCT
64 GAGGAAAACAGTGCAAAGAAAAGATTTCAGCA-G-AAAAGAAAA-CAATCAATATCGTTTATCCT
* *
2734945 AATGAAAAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCCCG
126 AATGAAGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTCG
* * *
2735010 TTTGTATCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCTTTTCTTACG
191 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTACG
* * * *
2735075 GAACCAAAGCATCAATATAGTGTATCCTTCTGAGAAGACAAAGTTTATGGTGCCTGATCACGAAA
256 AAACCAAAGCATCAATATAGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAA
*
2735140 AGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGATAAACTTCACTTCTATCAA
321 AGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGATAAACTTTACTTCTATCAA
*
2735205 AACCGGTGGAAAGAAAACATTTTCTTGTGCCCCCAAAGCATCAATGTCATGTATCCT
386 AAACGGTGGAAAGAAAACATTTTCTTGTGCCCCCAAAGCATCAATGTCATGTATCCT
2735262 GAAATCTTAT
Statistics
Matches: 1768, Mismatches: 92, Indels: 18
0.94 0.05 0.01
Matches are distributed among these distances:
473 2 0.00
474 3 0.00
475 413 0.23
476 1350 0.76
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (476 bp):
AAAAAAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTGA
GGAAAACAGTGCAAAGAAAAGATTTCAGCAGAAAAGAAAACAATCAATATCGTTTATCCTAATGA
AGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGT
CTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTACGAAACC
AAAGCATCAATATAGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAAT
GGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGATAAACTTTACTTCTATCAAAAACG
GTGGAAAGAAAACATTTTCTTGTGCCCCCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATA
TGCTTTTGCTTCCTAATCTCG
Found at i:2737151 original size:159 final size:157
Alignment explanation
Indices: 2736969--2738584 Score: 408
Period size: 159 Copynumber: 10.2 Consensus size: 157
2736959 AGAAGACAAA
*
2736969 GTTTATGGTGCCTAATCAT-GAAAAGAATGGGGATTAGCATGACAATTCTTGTTTGTCTTATTTA
1 GTTTATGCTGCCTAATC-TCGAAAAGAATGGGGATTAGCATGACAATTCTTGTTTGTCTTATTTA
* *
2737033 AGAGACAAACTTTACTTCTATCAAAAACGGTGGAAAGAACACATTTTCTTGCAGCACCAAAGCAT
65 AGAGACAAACTTTACTT-TA-CAAAAACGGTGGAAAGAAAACATTTTCTTGCAGAACCAAAGCAT
2737098 CAATGCCATGTATCCTAATGAAAGGAATAT
128 CAATGCCATGTATCCTAATGAAAGGAATAT
* * * ** * * ** * *
2737128 GCTTT-TGCTTCCTATTCTCGAAAA-AAGTGGAGACTT-TTATAAGAATTGATGCTTGTCATATT
1 G-TTTATGCTGCCTAATCTCGAAAAGAA-TGGGGA-TTAGCATGACAATTCTTGTTTGTCTTATT
* * ** * * * * * **
2737190 TAAGGGA-AGAATTTTGA-TATTGAGGAAAACAGTGCAAAGAAAAGA-TTTC-AGCGGAAAAGAA
63 TAAGAGACA-AACTTT-ACT-TT-ACAAAAACGGTGGAAAGAAAACATTTTCTTGCAG-AACCAA
* ** * * *
2737251 AACAATCAATATCGTTTATCCTAATG-AAGAGAATGT
123 AGC-ATCAATGCCATGTATCCTAATGAAAG-GAATAT
* ** * * * *
2737287 GTTTATAG-TGCCTAATCAC-AAAATGAATGAAGTTCATTA-C-T-AGAATCCTCGTTTGTCTCA
1 GTTTAT-GCTGCCTAATCTCGAAAA-GAATG--G-GGATTAGCATGACAATTCTTGTTTGTCTTA
* * * * * * *
2737347 TTTGAG-GCACGAACTTAGACTTTACAAAAAATGGTGGCAAGAAAAC-CTTTCTTAC-GAATCCA
61 TTTAAGAG-ACAAACTT-TACTTTAC-AAAAACGGTGGAAAGAAAACATTTTCTTGCAGAA-CCA
* ** * ** *
2737409 AAGCATTAAT-ATAGTGCATCCTTTTGAGAA-GACA-AA
122 AAGCATCAATGCCA-TGTATCCTAATGA-AAGGA-ATAT
*
2737445 GTTTATGGTGCCTAATCAT-GAAAAGAATGGGGATTAGCATGACAATTCTTGTTTGTCTTATTTA
1 GTTTATGCTGCCTAATC-TCGAAAAGAATGGGGATTAGCATGACAATTCTTGTTTGTCTTATTTA
* *
2737509 AGAGACAAACTTTACTTCTATCAAAAACGGTGGAAAGAACACATTTTCTTGCAGCACCAAAGCAT
65 AGAGACAAACTTTACTT-TA-CAAAAACGGTGGAAAGAAAACATTTTCTTGCAGAACCAAAGCAT
2737574 CAATGCCATGTATCCTAATGAAAGGAATAT
128 CAATGCCATGTATCCTAATGAAAGGAATAT
* * ** ** * * ** * *
2737604 GCTTT-TGCTTCCAAATCTCGAAAA-AAGTGTAGACTT-TTATAAGAATTGATGCTTGTCATATT
1 G-TTTATGCTGCCTAATCTCGAAAAGAA-TGGGGA-TTAGCATGACAATTCTTGTTTGTCTTATT
* * * * * * ** **
2737666 TAAGGGA-AGAATTTTGA-TATTA-AGGAAAACAGTGCAGAGAAAAGA-TTTC-AACAGAAAAGA
63 TAAGAGACA-AACTTT-ACT-TTACA--AAAACGGTGGAAAGAAAACATTTTCTTGCAG-AACCA
* ** * * *
2737726 AAACAATCAATATCGTTTATCCTAATG-AAGAGAATGT
122 AAGC-ATCAATGCCATGTATCCTAATGAAAG-GAATAT
* * ** * ** * * * * *
2737763 GTTTATAG-TGCCTAATCAC-AAAATGAACGAAGATCATTACT-AGAATCCTCGTTTTTCTCATT
1 GTTTAT-GCTGCCTAATCTCGAAAA-GAATGGGGATTAGCA-TGACAATTCTTGTTTGTCTTATT
* * * * * * * *
2737825 TGAG-GCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGC-CTTTCTTAC-GAAACCAAA
63 TAAGAG-ACAAACTT-TACTTTACAAAAA-CGGTGGAAAGAAAACATTTTCTTGCAG-AACCAAA
** ** *
2737887 GCATCAAT-ATATTGTATCCTTCTGAGAA-GACA-AA
124 GCATCAATGCCA-TGTATCCTAATGA-AAGGA-ATAT
* * *
2737921 GTTTATGGTGCCTAATCGT-GAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTACTTA
1 GTTTATGCTGCCTAATC-TCGAAAAGAATGGGGATTAGCATGACAATTCTTGTTTGTCTTATTTA
* ** * **
2737985 AGAGATAAACTTTACTTCTATCAAAAACGACGAAAAGAAAACATTTTCTT--ATGCCCCCAAAGC
65 AGAGACAAACTTTACTT-TA-CAAAAACGGTGGAAAGAAAACATTTTCTTGCA-G-AACCAAAGC
*
2738048 ATCAATGTCATGTATCCTAATGAAAGGAATAT
126 ATCAATGCCATGTATCCTAATGAAAGGAATAT
* * * ** * * ** * *
2738080 GCTTT-TGCTTCCTAATGTCGAAAA-AAGTGGAGACTT-TTATAAGAATTGATGCTTGTCATATT
1 G-TTTATGCTGCCTAATCTCGAAAAGAA-TGGGGA-TTAGCATGACAATTCTTGTTTGTCTTATT
* * ** * * * ** **
2738142 TAAGGGA-AGAATTTTGA-TATTGAGGAAAACAGTGCAAAGAAAAGA-TTTC-AACAGAAAAGAA
63 TAAGAGACA-AACTTT-ACT-TT-ACAAAAACGGTGGAAAGAAAACATTTTCTTGCAG-AACCAA
* ** * * * **
2738203 AACAATCAATATCGTTTATCCTAATGAAGGGAATGC
123 AGC-ATCAATGCCATGTATCCTAATGAAAGGAATAT
* * ** * ** * * * *
2738239 CTTTATAG-TGCCTAATCAC-AAAATGAATGAAGATCATTACT-AAAATCCTCGTTTGTCTCATT
1 GTTTAT-GCTGCCTAATCTCGAAAA-GAATGGGGATTAGCA-TGACAATTCTTGTTTGTCTTATT
* * * * * * ** * *
2738301 TGAG-GCACGAACTTAGATTTTACAAAAATTGGTGGCAAGAAGGC-CTTTCTTAC-GAAACCAAA
63 TAAGAG-ACAAACTT-TACTTTACAAAAA-CGGTGGAAAGAAAACATTTTCTTGCAG-AACCAAA
** *
2738363 GCATCAAT-ATATTGTATCCCT-ATGAGAA-GACA-AA
124 GCATCAATGCCA-TGTAT-CCTAATGA-AAGGA-ATAT
* *
2738397 GTTTATGGTGCCTAATCGT-GAAAAGAATGGGGATTAGCATGACAATTCATGTTTG-CTTATTTA
1 GTTTATGCTGCCTAATC-TCGAAAAGAATGGGGATTAGCATGACAATTCTTGTTTGTCTTATTTA
* * * * * *
2738460 AGAGATACACTTTACTTCTATCAAAAACGGCGAAAAGAAAACATTTTCTTG-TGACCCCAAAGCA
65 AGAGACAAACTTTACTT-TA-CAAAAACGGTGGAAAGAAAACATTTTCTTGCAGA-ACCAAAGCA
* * *
2738524 TCAATGTCATGTATCCTAATGAAGGGAATGT
127 TCAATGCCATGTATCCTAATGAAAGGAATAT
*
2738555 GTTCCT-TGCT-CCCAATCTCGAAAAGAATGG
1 GTT--TATGCTGCCTAATCTCGAAAAGAATGG
2738585 AGACTATTAT
Statistics
Matches: 1024, Mismatches: 300, Indels: 267
0.64 0.19 0.17
Matches are distributed among these distances:
155 4 0.00
156 5 0.00
157 52 0.05
158 353 0.34
159 553 0.54
160 53 0.05
161 3 0.00
162 1 0.00
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.30
Consensus pattern (157 bp):
GTTTATGCTGCCTAATCTCGAAAAGAATGGGGATTAGCATGACAATTCTTGTTTGTCTTATTTAA
GAGACAAACTTTACTTTACAAAAACGGTGGAAAGAAAACATTTTCTTGCAGAACCAAAGCATCAA
TGCCATGTATCCTAATGAAAGGAATAT
Found at i:2737564 original size:476 final size:476
Alignment explanation
Indices: 2736672--2739016 Score: 3776
Period size: 476 Copynumber: 4.9 Consensus size: 476
2736662 ATAGATTTCA
2736672 AAAAAAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTGA
1 AAAAAAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTGA
*
2736737 GGAAAACAGTGCAAAGAAAAGATTTCAGCGGAAAAGAAAACAATCAATATCGTTTATCCTAATGA
66 GGAAAACAGTGCAAAGAAAAGATTTCAGCAGAAAAGAAAACAATCAATATCGTTTATCCTAATGA
*
2736802 AGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCTCGTTTGT
131 AGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGT
* * *
2736867 CTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGCAAGAAAACCTTCCTTACGAAACC
196 CTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTACGAAACC
2736932 AAAGCATCAATATAGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAAT
261 AAAGCATCAATATAGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAAT
* *
2736997 GGGGATTAGCATGACAATTCTTGTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACG
326 GGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGATAAACTTTACTTCTATCAAAAACG
* * *
2737062 GTGGAAAGAACACATTTTCTTGCAG-CACCAAAGCATCAATGCCATGTATCCTAATGAAAGGAAT
391 GTGGAAAGAAAACATTTTCTTG-AGCCCCCAAAGCATCAATGTCATGTATCCTAATGAAAGGAAT
*
2737126 ATGCTTTTGCTTCCTATTCTCG
455 ATGCTTTTGCTTCCTAATCTCG
2737148 AAAAAAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTGA
1 AAAAAAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTGA
*
2737213 GGAAAACAGTGCAAAGAAAAGATTTCAGCGGAAAAGAAAACAATCAATATCGTTTATCCTAATGA
66 GGAAAACAGTGCAAAGAAAAGATTTCAGCAGAAAAGAAAACAATCAATATCGTTTATCCTAATGA
*
2737278 AGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCTCGTTTGT
131 AGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGT
* * *
2737343 CTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGCAAGAAAACCTTTCTTACGAATCC
196 CTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTACGAAACC
* * *
2737408 AAAGCATTAATATAGTGCATCCTTTTGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAAT
261 AAAGCATCAATATAGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAAT
* *
2737473 GGGGATTAGCATGACAATTCTTGTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACG
326 GGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGATAAACTTTACTTCTATCAAAAACG
* * *
2737538 GTGGAAAGAACACATTTTCTTGCAG-CACCAAAGCATCAATGCCATGTATCCTAATGAAAGGAAT
391 GTGGAAAGAAAACATTTTCTTG-AGCCCCCAAAGCATCAATGTCATGTATCCTAATGAAAGGAAT
*
2737602 ATGCTTTTGCTTCCAAATCTCG
455 ATGCTTTTGCTTCCTAATCTCG
* *
2737624 AAAAAAGTGTAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAA
1 AAAAAAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTGA
* *
2737689 GGAAAACAGTGCAGAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGA
66 GGAAAACAGTGCAAAGAAAAGATTTCAGCAGAAAAGAAAACAATCAATATCGTTTATCCTAATGA
* *
2737754 AGAGAATGTGTTTATAGTGCCTAATCACAAAATGAACGAAGATCATTACTAGAATCCTCGTTTTT
131 AGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGT
2737819 CTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTACGAAACC
196 CTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTACGAAACC
* * *
2737884 AAAGCATCAATATATTGTATCCTTCTGAGAAGACAAAGTTTATGGTGCCTAATCGTGAAAAGAAT
261 AAAGCATCAATATAGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAAT
*
2737949 GGGGATTAGCATGACAATTCATGTTTGTCTTACTTAAGAGATAAACTTTACTTCTATCAAAAACG
326 GGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGATAAACTTTACTTCTATCAAAAACG
** *
2738014 ACGAAAAGAAAACATTTTCTT-ATGCCCCCAAAGCATCAATGTCATGTATCCTAATGAAAGGAAT
391 GTGGAAAGAAAACATTTTCTTGA-GCCCCCAAAGCATCAATGTCATGTATCCTAATGAAAGGAAT
*
2738078 ATGCTTTTGCTTCCTAATGTCG
455 ATGCTTTTGCTTCCTAATCTCG
2738100 AAAAAAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTGA
1 AAAAAAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTGA
*
2738165 GGAAAACAGTGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGA
66 GGAAAACAGTGCAAAGAAAAGATTTCAGCAGAAAAGAAAACAATCAATATCGTTTATCCTAATGA
* ** *
2738230 AGGGAATGCCTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAAAATCCTCGTTTGT
131 AGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGT
* *
2738295 CTCATTTGAGGCACGAACTTAGATTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACGAAACC
196 CTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTACGAAACC
* * *
2738360 AAAGCATCAATATATTGTATCCCTATGAGAAGACAAAGTTTATGGTGCCTAATCGTGAAAAGAAT
261 AAAGCATCAATATAGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAAT
*
2738425 GGGGATTAGCATGACAATTCATGTTTG-CTTATTTAAGAGATACACTTTACTTCTATCAAAAACG
326 GGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGATAAACTTTACTTCTATCAAAAACG
* * * * * *
2738489 GCGAAAAGAAAACATTTTCTTGTGACCCCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATG
391 GTGGAAAGAAAACATTTTCTTGAGCCCCCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATA
*
2738554 TG-TTCCTTGC-TCCCAATCTCG
456 TGCTT--TTGCTTCCTAATCTCG
* * * * * * * *
2738575 AAAAGAA-TGGAGACTATTATCAGAATCGATGCTTTTCATAATTATGGGATGAATTTTGATTTTT
1 AAAA-AAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGA-TATT
* * * * * *
2738639 G-TGAAAATAGGGCAAAGAAAAGATTTC--CATGCAAAAGAAAATC-GTGAATATTGTTTATCCT
64 GAGGAAAACAGTGCAAAGAAAAGATTTCAGCA-G-AAAAGAAAA-CAATCAATATCGTTTATCCT
* *
2738700 AATGAAAAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCCCG
126 AATGAAGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTCG
* * *
2738765 TTTGTATCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCTTTTCTTACG
191 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTACG
* * * *
2738830 GAACCAAAGCATCAATATAGTGTATCCTTCTGAGAAGACAAAGTTTATGGTGCCTGATCACGAAA
256 AAACCAAAGCATCAATATAGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAA
*
2738895 AGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGATAAACTTCACTTCTATCAA
321 AGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGATAAACTTTACTTCTATCAA
* *
2738960 AACCGGTGGAAAGAAAACATTTTCTTGTGCCCCCAAAGCATCAATGTCATGTATCCT
386 AAACGGTGGAAAGAAAACATTTTCTTGAGCCCCCAAAGCATCAATGTCATGTATCCT
2739017 GAAATCTTAT
Statistics
Matches: 1764, Mismatches: 94, Indels: 22
0.94 0.05 0.01
Matches are distributed among these distances:
473 2 0.00
474 4 0.00
475 411 0.23
476 1347 0.76
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (476 bp):
AAAAAAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTGA
GGAAAACAGTGCAAAGAAAAGATTTCAGCAGAAAAGAAAACAATCAATATCGTTTATCCTAATGA
AGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGT
CTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTACGAAACC
AAAGCATCAATATAGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAAT
GGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGATAAACTTTACTTCTATCAAAAACG
GTGGAAAGAAAACATTTTCTTGAGCCCCCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATA
TGCTTTTGCTTCCTAATCTCG
Found at i:2741326 original size:476 final size:476
Alignment explanation
Indices: 2740427--2743247 Score: 4568
Period size: 476 Copynumber: 5.9 Consensus size: 476
2740417 GTAGATTTCA
2740427 AAAAAAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAA
1 AAAAAAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAA
2740492 GGAAAACAGTGCAAAGAAAAGATTTCAACGGAAAAGAAAACAATCAATATCGTTTATCCTAATGA
66 GGAAAACAGTGCAAAGAAAAGATTTCAACGGAAAAGAAAACAATCAATATCGTTTATCCTAATGA
* * * *
2740557 AGAGAATGTGCTTATAGTGCCTAATCACAAATTGAATGAAGTTCATTTCTAGAATCCTCGTTTGT
131 AGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGT
2740622 CTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGCAAGAAAGCCTTTCTTACGAAACC
196 CTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGCAAGAAAGCCTTTCTTACGAAACC
2740687 AAAGCATCAATATAGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAAT
261 AAAGCATCAATATAGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAAT
* *
2740752 GGGGATTAGCATGACAATTCATGTTTGTCTTACTTAAGAGATAAACTTTACCTCTATCAAAAACG
326 GGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGATAAACTTTACTTCTATCAAAAACG
** * *
2740817 GCAGAAAGAAAACATTTTCTT-CTGCCCCCAAAGCATCAACGTCATGTATCCTAATGAAGGGAAT
391 GTGGAAA-AAAACATTTTCTTGCTGCCCCCAAAGCATCAATGTCATGTATCCTAATGAAAGGAAT
* *
2740881 ATGCTTTTGCTTCTTAATGTCG
455 ATGCTTTTGCTTCCTAATCTCG
*
2740903 AAAAAAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAGGGGAAGAATTTTGATATTAA
1 AAAAAAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAA
2740968 GGAAAACAGTGCAAAGAAAAGATTTCAACGGAAAAGAAAACAATCAATATCGTTTATCCTAATGA
66 GGAAAACAGTGCAAAGAAAAGATTTCAACGGAAAAGAAAACAATCAATATCGTTTATCCTAATGA
* * * *
2741033 AGACAATGTGTTTATAGTGCCTAATCACAATATTAATGAAGTTCATTACTAGAATCCTCGTTTGT
131 AGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGT
* *
2741098 CTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGCAAGAAAACCTTCCTTACGAAACC
196 CTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGCAAGAAAGCCTTTCTTACGAAACC
2741163 AAAGCATCAATATAGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAAT
261 AAAGCATCAATATAGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAAT
* *
2741228 GGGGATTAGCATGACAATTCTTGTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACG
326 GGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGATAAACTTTACTTCTATCAAAAACG
* * *
2741293 GTGGAAAAAACACATTTTCTTGCAG-CACCAAAGCATCAATGCCATGTATCCTAATGAAAGGAAT
391 GTGGAAAAAA-ACATTTTCTTGCTGCCCCCAAAGCATCAATGTCATGTATCCTAATGAAAGGAAT
*
2741357 ATGCTTTTGCTTCCTATTCTCG
455 ATGCTTTTGCTTCCTAATCTCG
*
2741379 AAAAAAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTGA
1 AAAAAAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAA
*
2741444 GGAAAACAGTGCAAAGAAAAGATTTCAGCGGAAAAGAAAACAATCAATATCGTTTATCCTAATGA
66 GGAAAACAGTGCAAAGAAAAGATTTCAACGGAAAAGAAAACAATCAATATCGTTTATCCTAATGA
*
2741509 AGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCTCGTTTGT
131 AGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGT
* * *
2741574 CTCATTTGAGGCACGAACTTAGACATTACAAAAAATGGTGGCAAGAAAACCTTTCTTACGAATCC
196 CTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGCAAGAAAGCCTTTCTTACGAAACC
* * *
2741639 AAAGCATTAATATAGTGCATCCTTTTGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAAT
261 AAAGCATCAATATAGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAAT
* *
2741704 GGGGATTAGCATGACAATTCTTGTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACG
326 GGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGATAAACTTTACTTCTATCAAAAACG
* * * *
2741769 GTGGAAAGAACACATTTTCTTGCAG-CACCAAAGCATCAATGCCATGTATCCTAATGAAAGGAAT
391 GTGGAAA-AAAACATTTTCTTGCTGCCCCCAAAGCATCAATGTCATGTATCCTAATGAAAGGAAT
2741833 ATGCTTTTGCTTCCTAATCTCG
455 ATGCTTTTGCTTCCTAATCTCG
2741855 AAAAAAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAA
1 AAAAAAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAA
* *
2741920 GGAAAACAGTGCAGAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGA
66 GGAAAACAGTGCAAAGAAAAGATTTCAACGGAAAAGAAAACAATCAATATCGTTTATCCTAATGA
* *
2741985 AGAGAATGTGTTTATAGTGCCTAATCACAAAATGAACGAAGATCATTACTAGAATCCTCGTTTTT
131 AGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGT
*
2742050 CTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTACGAAACC
196 CTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGCAAGAAAGCCTTTCTTACGAAACC
* * *
2742115 AAAGCATCAATATATTGTATCCTTCTGAGAAGACAAAGTTTATGGTGCCTAATCGTGAAAAGAAT
261 AAAGCATCAATATAGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAAT
*
2742180 GGGGATTAGCATGACAATTCATGTTTGTCTTACTTAAGAGATAAACTTTACTTCTATCAAAAACG
326 GGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGATAAACTTTACTTCTATCAAAAACG
* *
2742245 GCGAAAAGAAAACATTTTCTTG-TGCCCCCAAAGCATCAATGTCATGTATCCTAATGAAAGGAAT
391 GTGGAAA-AAAACATTTTCTTGCTGCCCCCAAAGCATCAATGTCATGTATCCTAATGAAAGGAAT
*
2742309 ATGCTTTTGCTTCCTAATGTCG
455 ATGCTTTTGCTTCCTAATCTCG
*
2742331 AAAAAAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTGA
1 AAAAAAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAA
*
2742396 GGAAAACAGTGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGA
66 GGAAAACAGTGCAAAGAAAAGATTTCAACGGAAAAGAAAACAATCAATATCGTTTATCCTAATGA
* ** *
2742461 AGGGAATGCCTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAAAATCCTCGTTTGT
131 AGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGT
* * *
2742526 CTCATTTGAGGCACGAACTTAGATTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACGAAACC
196 CTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGCAAGAAAGCCTTTCTTACGAAACC
* * *
2742591 AAAGCATCAATATATTGTATCCCTATGAGAAGACAAAGTTTATGGTGCCTAATCGTGAAAAGAAT
261 AAAGCATCAATATAGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAAT
2742656 GGGGATTAGCATGACAATTCATGTTTG-CTTATTTAAGAGATAAACTTTACTTCTATCAAAAACG
326 GGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGATAAACTTTACTTCTATCAAAAACG
* * * *
2742720 GCGAAAAGAAAACATTTTCTTG-TGGCCCCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAT
391 GTGGAAA-AAAACATTTTCTTGCTGCCCCCAAAGCATCAATGTCATGTATCCTAATGAAAGGAAT
* *
2742784 GTG-TTCCTTGC-TCCCAATCTCG
455 ATGCTT--TTGCTTCCTAATCTCG
* * * * * * * *
2742806 AAAAGAA-TGGAGACTATTATCAGAATCGATGCTTTTCATAATTATGGGATGAATTTTGAT-TTT
1 AAAA-AAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTA
* * * * * * * * *
2742869 TGTGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATC-GTGAATATTGTTTATCCTAA
65 AG-GAAAACAGTGCAAAGAAAAGATTTCAACGGAAAAGAAAA-CAATCAATATCGTTTATCCTAA
* *
2742933 TGAAAAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCCCGTT
128 TGAAGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTT
* * * * *
2742998 TGTATCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCTTTTCTTACGGA
193 TGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGCAAGAAAGCCTTTCTTACGAA
* * *
2743063 ACCAAAGCATCAATATAGTGTATCCTTCTGAGAAGACAAAGTTTATGGTGCCTGATCACGAAAAG
258 ACCAAAGCATCAATATAGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAG
*
2743128 AATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGATAAACTTCACTTCTATCAAAA
323 AATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGATAAACTTTACTTCTATCAAAA
*
2743193 CCGGTGGAAAGAAAACATTTTCTTG-TGCCCCCAAAGCATCAATGTCATGTATCCT
388 ACGGTGGAAA-AAAACATTTTCTTGCTGCCCCCAAAGCATCAATGTCATGTATCCT
2743248 GAAATCTTAT
Statistics
Matches: 2213, Mismatches: 122, Indels: 20
0.94 0.05 0.01
Matches are distributed among these distances:
474 5 0.00
475 420 0.19
476 1784 0.81
477 4 0.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (476 bp):
AAAAAAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAA
GGAAAACAGTGCAAAGAAAAGATTTCAACGGAAAAGAAAACAATCAATATCGTTTATCCTAATGA
AGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGT
CTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGCAAGAAAGCCTTTCTTACGAAACC
AAAGCATCAATATAGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAAT
GGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGATAAACTTTACTTCTATCAAAAACG
GTGGAAAAAAACATTTTCTTGCTGCCCCCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATA
TGCTTTTGCTTCCTAATCTCG
Found at i:2741778 original size:158 final size:156
Alignment explanation
Indices: 2740644--2743208 Score: 598
Period size: 159 Copynumber: 16.2 Consensus size: 156
2740634 ACGAACTTAG
* * *
2740644 ACTTTACAAAAAATGGTGGCAAGAAAGCCTTTCTTAC-GAAACCAAAGCATCAATATAGTGTATC
1 ACTTTAC-AAAAACGGTGGAAAGAAAACCTTTCTTACAGAAACCAAAGCATCAATATAGTGTATC
*
2740708 CTTATGAGAAGACA-AAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTC
65 CTAATGA-AAGA-ATAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTC
* * *
2740772 ATGTTTGTCTTACTTAAGAGATAAACTTT
128 TTGTTTGTCTTATTTAAGAGACAAACTTT
* ** * * *** **
2740801 ACCTCTATCAAAAACGGCAGAAAGAAAACATTTTCTT-CTGCCCCCAAAGCATCAACGTCA-TGT
1 A-CTTTA-CAAAAACGGTGGAAAGAAAAC-CTTTCTTACAGAAACCAAAGCATCAATAT-AGTGT
* * * * * * * ** *
2740864 ATCCTAATGAAGGGAATATGCTTT-TGCTTCTTAAT-GTCGAAAA-AAGTGGAGACTT-TTATAA
62 ATCCTAATGAA-AGAATAAG-TTTATGGTGCCTAATCAT-GAAAAGAA-TGGGGA-TTAGCATGA
* ** * * * * *
2740925 GAATTGATGCTTGTCATATTTAGGGGA-AGAATTTT
122 CAATTCTTGTTTGTCTTATTTAAGAGACA-AACTTT
* * ** * * ** * * *
2740960 GA-TATTA-AGGAAAACAGTGCAAAGAAAAGATTTC-AACGGAAAAGAAAACAATCAATATCGTT
1 -ACT-TTACA--AAAACGGTGGAAAGAAAACCTTTCTTACAGAAACCAAAGC-ATCAATATAGTG
* ** * ** ***
2741022 TATCCTAATGAAGACAATGTGTTTATAGTGCCTAATCACAATATTAATGAA-GTTCATTA-C-T-
61 TATCCTAATGAA-AGAATAAGTTTATGGTGCCTAATCATGA-A--AA-GAATGGGGATTAGCATG
* * * * * * *
2741083 AGAATCCTCGTTTGTCTCATTTGAG-GCACGAACTTAG
121 ACAATTCTTGTTTGTCTTATTTAAGAG-ACAAACTT-T
* * *
2741120 ACTTTACAAAAAATGGTGGCAAGAAAACCTTCCTTAC-GAAACCAAAGCATCAATATAGTGTATC
1 ACTTTAC-AAAAACGGTGGAAAGAAAACCTTTCTTACAGAAACCAAAGCATCAATATAGTGTATC
*
2741184 CTTATGAGAAGACA-AAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTC
65 CTAATGA-AAGA-ATAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTC
2741248 TTGTTTGTCTTATTTAAGAGACAAACTTT
128 TTGTTTGTCTTATTTAAGAGACAAACTTT
* * * **
2741277 ACTTCTATCAAAAACGGTGGAAA-AAACACATTTTCTTGCAG-CACCAAAGCATCAATGCCA-TG
1 ACTT-TA-CAAAAACGGTGGAAAGAAA-AC-CTTTCTTACAGAAACCAAAGCATCAAT-ATAGTG
* * * * * ** *
2741339 TATCCTAATGAAAGGAATATGCTTT-TGCTTCCTATTC-TCGAAAA-AAGTGGAGACTT-TTATA
61 TATCCTAATGAAA-GAATAAG-TTTATGGTGCCTAATCAT-GAAAAGAA-TGGGGA-TTAGCATG
* ** * * * *
2741400 AGAATTGATGCTTGTCATATTTAAGGGA-AGAATTTT
121 ACAATTCTTGTTTGTCTTATTTAAGAGACA-AACTTT
** * * ** * ** * * *
2741436 GA-TATTGAGGAAAACAGTGCAAAGAAAAGATTTC--AGCGGAAAAGAAAACAATCAATATCGTT
1 -ACT-TT-ACAAAAACGGTGGAAAGAAAACCTTTCTTA-CAGAAACCAAAGC-ATCAATATAGTG
** * * **
2741498 TATCCTAATGAAGAGAATGTGTTTATAGTGCCTAATCA-CAAAATGAATGAAGTTCATTA-C-T-
61 TATCCTAATGAA-AGAATAAGTTTATGGTGCCTAATCATGAAAA-GAATG--G-GGATTAGCATG
* * * * * * *
2741559 AGAATCCTCGTTTGTCTCATTTGAG-GCACGAACTTAG
121 ACAATTCTTGTTTGTCTTATTTAAGAG-ACAAACTT-T
* * * * * *
2741596 ACATTACAAAAAATGGTGGCAAGAAAACCTTTCTTAC-GAATCCAAAGCATTAATATAGTGCATC
1 ACTTTAC-AAAAACGGTGGAAAGAAAACCTTTCTTACAGAAACCAAAGCATCAATATAGTGTATC
**
2741660 CTTTTGAGAAGACA-AAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTC
65 CTAATGA-AAGA-ATAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTC
2741724 TTGTTTGTCTTATTTAAGAGACAAACTTT
128 TTGTTTGTCTTATTTAAGAGACAAACTTT
* * * * **
2741753 ACTTCTATCAAAAACGGTGGAAAGAACACATTTTCTTGCAG-CACCAAAGCATCAATGCCA-TGT
1 ACTT-TA-CAAAAACGGTGGAAAGAAAAC-CTTTCTTACAGAAACCAAAGCATCAAT-ATAGTGT
* * * * ** *
2741816 ATCCTAATGAAAGGAATATGCTTT-TGCTTCCTAATC-TCGAAAA-AAGTGGAGACTT-TTATAA
62 ATCCTAATGAAA-GAATAAG-TTTATGGTGCCTAATCAT-GAAAAGAA-TGGGGA-TTAGCATGA
* ** * * * *
2741877 GAATTGATGCTTGTCATATTTAAGGGA-AGAATTTT
122 CAATTCTTGTTTGTCTTATTTAAGAGACA-AACTTT
* * * ** * ** * * *
2741912 GA-TATTA-AGGAAAACAGTGCAGAGAAAAGATTTC-AACAGAAAAGAAAACAATCAATATCGTT
1 -ACT-TTACA--AAAACGGTGGAAAGAAAACCTTTCTTACAGAAACCAAAGC-ATCAATATAGTG
** * * * ** * ** *
2741974 TATCCTAATGAAGAGAATGTGTTTATAGTGCCTAATCA-CAAAATGAACGAAGATCATTACT-AG
61 TATCCTAATGAA-AGAATAAGTTTATGGTGCCTAATCATGAAAA-GAATGGGGATTAGCA-TGAC
* * * * * * *
2742037 AATCCTCGTTTTTCTCATTTGAG-GCACGAACTTAG
123 AATTCTTGTTTGTCTTATTTAAGAG-ACAAACTT-T
* * * *
2742072 ACTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTAC-GAAACCAAAGCATCAATATATTGTATC
1 ACTTTACAAAAA-CGGTGGAAAGAAAACCTTTCTTACAGAAACCAAAGCATCAATATAGTGTATC
** *
2742136 CTTCTGAGAAGACA-AAGTTTATGGTGCCTAATCGTGAAAAGAATGGGGATTAGCATGACAATTC
65 CTAATGA-AAGA-ATAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTC
* * *
2742200 ATGTTTGTCTTACTTAAGAGATAAACTTT
128 TTGTTTGTCTTATTTAAGAGACAAACTTT
* * * ** *** *
2742229 ACTTCTATCAAAAACGGCGAAAAGAAAACATTTTCTT-GTGCCCCCAAAGCATCAATGTCA-TGT
1 ACTT-TA-CAAAAACGGTGGAAAGAAAAC-CTTTCTTACAGAAACCAAAGCATCAATAT-AGTGT
* * * * * ** *
2742292 ATCCTAATGAAAGGAATATGCTTT-TGCTTCCTAAT-GTCGAAAA-AAGTGGAGACTT-TTATAA
62 ATCCTAATGAAA-GAATAAG-TTTATGGTGCCTAATCAT-GAAAAGAA-TGGGGA-TTAGCATGA
* ** * * * *
2742353 GAATTGATGCTTGTCATATTTAAGGGA-AGAATTTT
122 CAATTCTTGTTTGTCTTATTTAAGAGACA-AACTTT
** * * ** * ** * * *
2742388 GA-TATTGAGGAAAACAGTGCAAAGAAAAGATTTC-AACAGAAAAGAAAACAATCAATATCGTTT
1 -ACT-TT-ACAAAAACGGTGGAAAGAAAACCTTTCTTACAGAAACCAAAGC-ATCAATATAGTGT
* *** * * ** * ** *
2742451 ATCCTAATGAAGGGAATGCCTTTATAGTGCCTAATCA-CAAAATGAATGAAGATCATTACT-AAA
62 ATCCTAATGAA-AGAATAAGTTTATGGTGCCTAATCATGAAAA-GAATGGGGATTAGCA-TGACA
* * * * * *
2742514 ATCCTCGTTTGTCTCATTTGAG-GCACGAACTTAG
124 ATTCTTGTTTGTCTTATTTAAGAG-ACAAACTT-T
* * * ** *
2742548 ATTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTAC-GAAACCAAAGCATCAATATATTGTATC
1 ACTTTACAAAAA-CGGTGGAAAGAAAACCTTTCTTACAGAAACCAAAGCATCAATATAGTGTAT-
*
2742612 CCT-ATGAGAAGACA-AAGTTTATGGTGCCTAATCGTGAAAAGAATGGGGATTAGCATGACAATT
64 CCTAATGA-AAGA-ATAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATT
* *
2742675 CATGTTTG-CTTATTTAAGAGATAAACTTT
127 CTTGTTTGTCTTATTTAAGAGACAAACTTT
* * * ** *** *
2742704 ACTTCTATCAAAAACGGCGAAAAGAAAACATTTTCTT-GTGGCCCCAAAGCATCAATGTCA-TGT
1 ACTT-TA-CAAAAACGGTGGAAAGAAAAC-CTTTCTTACAGAAACCAAAGCATCAATAT-AGTGT
* ** * * * * ** * *
2742767 ATCCTAATGAAGGGAATGTGTTCCT-TGCT-CCCAATC-TCGAAAAGAATGGAGACTATTATCAG
62 ATCCTAATGAA-AGAATAAGTT--TATGGTGCCTAATCAT-GAAAAGAATGGGGATTAGCATGAC
* * * * * ** *
2742829 AA-TCGATGCTTT-TCATAATTATGGGATGAATTTT
123 AATTC-TTG-TTTGTCTTATTTAAGAGACAAACTTT
* ** * ** * * ** * * * * *
2742863 GATTTTTGTGAAAATA-GG-GCAAAGAAAAGATTTCCATGCA-AAAGAAAATCGTGAATATTGTT
1 -A-CTTT-ACAAAA-ACGGTGGAAAGAAAACCTTT-CTTACAGAAACCAAAGCATCAATATAGTG
** * * ** * ** *
2742925 TATCCTAATGAAAAGAATGTGTTTATAGTGCCTAATCA-CAAAATGAATGAAGATCATTACT-AG
61 TATCCTAATG-AAAGAATAAGTTTATGGTGCCTAATCATGAAAA-GAATGGGGATTAGCA-TGAC
* ** * * * *
2742988 AATCCCCGTTTGTATCATTTGAG-GCACAAACTTAG
123 AATTCTTGTTTGTCTTATTTAAGAG-ACAAACTT-T
* * * * *
2743023 ACTTTACAAAAATTGGTGGCAAGAAAGCTTTTCTTAC-GGAACCAAAGCATCAATATAGTGTATC
1 ACTTTACAAAAA-CGGTGGAAAGAAAACCTTTCTTACAGAAACCAAAGCATCAATATAGTGTATC
** * *
2743087 CTTCTGAGAAGACA-AAGTTTATGGTGCCTGATCACGAAAAGAATGGGGATTAGCATGACAATTC
65 CTAATGA-AAGA-ATAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTC
* * *
2743151 ATGTTTGTCTTATTTAAGAGATAAACTTC
128 TTGTTTGTCTTATTTAAGAGACAAACTTT
*
2743180 ACTTCTATCAAAACCGGTGGAAAGAAAAC
1 ACTT-TA-CAAAAACGGTGGAAAGAAAAC
2743209 ATTTTCTTGT
Statistics
Matches: 1684, Mismatches: 522, Indels: 403
0.65 0.20 0.15
Matches are distributed among these distances:
154 3 0.00
155 11 0.01
156 7 0.00
157 71 0.04
158 614 0.36
159 886 0.53
160 75 0.04
161 10 0.01
162 5 0.00
164 2 0.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (156 bp):
ACTTTACAAAAACGGTGGAAAGAAAACCTTTCTTACAGAAACCAAAGCATCAATATAGTGTATCC
TAATGAAAGAATAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTG
TTTGTCTTATTTAAGAGACAAACTTT
Found at i:2744746 original size:39 final size:40
Alignment explanation
Indices: 2744694--2744781 Score: 106
Period size: 39 Copynumber: 2.2 Consensus size: 40
2744684 TCTTTCTCCT
**
2744694 TTAATTAAAGTAATTTTAACAAATTCGTGCATTCTCCCCC
1 TTAATTAAAGTAATTTTAACAAATTCACGCATTCTCCCCC
* * * *
2744734 TTAA-TAAGGTAATTTTAGCAAATTTACGCATTCTCCCCT
1 TTAATTAAAGTAATTTTAACAAATTCACGCATTCTCCCCC
*
2744773 TTTATTAAA
1 TTAATTAAA
2744782 AAAACAAAAA
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
39 32 0.82
40 7 0.18
ACGTcount: A:0.33, C:0.19, G:0.08, T:0.40
Consensus pattern (40 bp):
TTAATTAAAGTAATTTTAACAAATTCACGCATTCTCCCCC
Found at i:2746651 original size:13 final size:13
Alignment explanation
Indices: 2746633--2746666 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
2746623 AATCCCCCTC
2746633 TATCGATA-CAGTG
1 TATCGATACCA-TG
2746646 TATCGATACCATG
1 TATCGATACCATG
2746659 TATCGATA
1 TATCGATA
2746667 TAAAGAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 18 0.90
14 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (13 bp):
TATCGATACCATG
Found at i:2748773 original size:16 final size:16
Alignment explanation
Indices: 2748739--2748776 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
2748729 CATCGATTTC
*
2748739 TTTTGGAGCTTCTTCA
1 TTTTGGAGCTTCCTCA
2748755 TTTT-GAGCTTCCTCA
1 TTTTGGAGCTTCCTCA
*
2748770 ATTTGGA
1 TTTTGGA
2748777 CATTTTTATC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
15 13 0.68
16 6 0.32
ACGTcount: A:0.16, C:0.18, G:0.18, T:0.47
Consensus pattern (16 bp):
TTTTGGAGCTTCCTCA
Found at i:2752228 original size:20 final size:20
Alignment explanation
Indices: 2752186--2752224 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
2752176 CGTGCGAATG
* *
2752186 TATCGATACAATTTTTGATA
1 TATCGATACAATATTTGAAA
2752206 TATCGATAC-ATATTTGAAA
1 TATCGATACAATATTTGAAA
2752225 ATATAGCCGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.41
Consensus pattern (20 bp):
TATCGATACAATATTTGAAA
Found at i:2752295 original size:13 final size:13
Alignment explanation
Indices: 2752277--2752302 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2752267 ATTTTTTTTG
2752277 TGTATCGATACAT
1 TGTATCGATACAT
2752290 TGTATCGATACAT
1 TGTATCGATACAT
2752303 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2754282 original size:476 final size:476
Alignment explanation
Indices: 2752694--2793078 Score: 46664
Period size: 476 Copynumber: 84.7 Consensus size: 476
2752684 GATCCTAACA
*
2752694 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCTAAAAGAATGGAGACTATTACGAGAA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTACGAGAA
* * * * *
2752759 TCAATGCTTTTCATAATTATGGGATGAATTTTTGATTTTAAGGAAAATAGGGCCCAA-AAAAGAT
66 TCGATGCTTGTCATAATTATGGGATGAA-TTTTGATATTAAGGAAAATAAGG-CAAAGAAAAGAT
* * *
2752823 TTCCATGCAAAAGAAAATCTTGAATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCGTA
129 TTCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
** * * * *
2752888 ATCACTGAAAGAATGAAAATCATTAGTAGAATCCTTGTTTGTCTCATTTGAGGCACGAGCTTAGA
194 ATCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGA
* * *
2752953 CTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGAATTAATATCGTTTATCCT
259 CTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCT
* * * * *
2753018 TATGAGAAGATAAAGTTTCTAGTGCCTAATCAAGAAAAGAATGGGGATTAGCATCACAATTCTTG
324 TATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTG
* *
2753083 TTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGACGGAAAGAAAACATTTTCTGGT
389 TTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGT
*
2753148 GACCCCAAAGCATCAATGTCATG
454 GACACCAAAGCATCAATGTCATG
* * * *
2753171 GATCCTAATGAATGGAATGTGTTCTTATCTCCCATTCTCGAAAAGAATGGAGACTATTATC-AGA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTA-CGAGA
* * ** *
2753235 ATCGATGCTTTTCATAATTATGGGATGAATTTTGATTTTTGGGAAAATAGGGCAAAGAAAAGATT
65 ATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAGGCAAAGAAAAGATT
* * *
2753300 TCCATGCAAAAGAAAATCGTGAATATCATTTATCATAATGAGGAGAATGTGTTTTTAGTGCCTAA
130 TCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
* * * *
2753365 TCACAGAAAGAATGAAGATCATTAGTAGAATCCTCGTTTGTATCATTTGAGGCACGAGCTTAGAC
195 TCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGAC
* *
2753430 TTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACAAAACCAAAGAATCAATATCGTGTATCCTT
260 TTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTT
2753495 ATGAGAAGACAAAGTTTATGGTGCCTAATCATG---A-AATGGGGATTAGCATGACAATTCTTGT
325 ATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTGT
* * * * * ** **
2753556 TTCTCTTCTTTAAGAGACAAACTTTACTTCTATAAAAAATGGTGGAAAGAACGCATTTTCTTGCA
390 TTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTG
* *
2753621 ACATCAAAGCATCAATGCCATG
455 ACACCAAAGCATCAATGTCATG
* * * * * **
2753643 TATCCTAATGAAAGAAATATGCTT-TT-GCTTCCTAATCTCGAAAA-AAGTGGAGACTTTTATAA
1 TATCCTAATGAAGGGAATGTG-TTCTTAGC-TCCCAATCTCGAAAAGAA-TGGAGACTATTACGA
* * * * ** * *
2753705 AAATTGATGCTTGTCATATTTAAGGGAACAATTTTGGTATTAAGGAAAAT-AGTGCAAAAAAAAG
63 GAATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAG-GCAAAGAAAAG
* * * * * * * *
2753769 ATTTCAACGGAAAAGAAAA-CAATCAATATCGTTTATCCTAATAAAGAGAATGTGTTTATAGTGT
127 ATTTCCATGCAAAAGAAAATC-ATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
*
2753833 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTT
191 CTAATCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTT
* * * * *
2753898 TGACTTTACAAAAATTGGTGGCAAGAAGGGCTTTCTTACGAAACCAAAGCATCAATATAGTGTAT
256 AGACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTAT
* * * *
2753963 CCTTATGAGAAGACAAACTTTATGGTGCCTAATCGTGAAAAGAATAGGGATTAGCCTGACAATTC
321 CCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTC
* * * * *
2754028 ATATTTGTCATATTTAAGAGATAAACTTTACTTCTATCAAAAACAGCGGAAAGAAAACATTTTCT
386 TTGTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCT
* * *
2754093 TGTGCCCCCAAAGCATCAATGTCATA
451 TGTGACACCAAAGCATCAATGTCATG
*
2754119 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTGCGAGAA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTACGAGAA
* * * *
2754184 TCGACGCTTTTCATAATTATGGGATGAATTTTGATTTTAAAGAAAATAAGGCAAAGAAAAGATTT
66 TCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAGGCAAAGAAAAGATTT
* * *
2754249 CCATGCAAAAGAAAATCGTGAATATCGTTTATCCTAATGAAGAGAATGTGTTTATAGTGCCTAAT
131 CCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
** * * * *
2754314 CACTGAAAGAATGAAAATCATTAGTAGAATCCTCGTTTGTCTCATTCGAGGCACGAGCTTAGACT
196 CACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACT
* * *
2754379 TTACAAAAATTGGTGACAAGAAAGCCTTTCTCACGAAACCAAAGAATTAATATCGTGTATCCTTA
261 TTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTA
* * *
2754444 TGAGAAGATAAAGTTTATGGTGCCTAATCATGAAAAGAATGAGGATTAGCATCACAATTCTTGTT
326 TGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTGTT
*
2754509 TGTCTTATTTAAGAGACAAACTTTTCTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTGA
391 TGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTGA
* *
2754574 CCCCAAAGCGTCAATGTCATG
456 CACCAAAGCATCAATGTCATG
* * * * **
2754595 -ATCCTAATGCAGGGGATGTG--CATT-GCTTCCTAATCTCGAAAA-AAGTGGAGACTTTTATAA
1 TATCCTAATGAAGGGAATGTGTTC-TTAGC-TCCCAATCTCGAAAAGAA-TGGAGACTATTACGA
* ** * * * * * *
2754655 GAATTGATGCTTGTCATTTTTAAGGGAAGAATTTTGATATTAAGCAAAACAATGCAAATAAAAGA
63 GAATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAGGCAAAGAAAAGA
* * * * * * * *
2754720 TTTCAACGGAAAA-CAAAGCAATTAATATCGTTTATCCTAATGAAGAGAATGTGTTTATAGTGCC
128 TTTCCATGCAAAAGAAAATC-ATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* *
2754784 TAATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACAAACTTA
192 TAATCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTA
* * * **
2754849 GACTTTACAAAAATTGGTGGCAAGAAGGCCTTTGTTACGAAACCAAAGCATCAATATATTGTATC
257 GACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATC
* * * *
2754914 CTAATGAGAAGACAAAGTTTATGGTGCCTAATCGTGAAAAGAATGGGGATTACCATGACAATTCA
322 CTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCT
* * * *
2754979 TGTTTGTCTTACTTAAGAGATAAACTTTACCTCTATCAAAAACGGCGGAAAGAAAACAATTTCTT
387 TGTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTT
** *
2755044 GTGACTGCAAAGCGTCAATGTCATG
452 GTGACACCAAAGCATCAATGTCATG
* * * * * **
2755069 TATCCTAATGCAAGGGGATGTG--CATT-GCTTCCTATTCTCGAAAAAAATGGAGACTTTTATAA
1 TATCCTAATG-AAGGGAATGTGTTC-TTAGC-TCCCAATCTCGAAAAGAATGGAGACTATTACGA
** ** * * * * *
2755131 GAATTAATGCTTGTCATTTTTAAGGGAAGAATTTTGATATTAAGGAAAACAATGCAAATAAAAGA
63 GAATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAGGCAAAGAAAAGA
* * * * * * * *
2755196 TTTCAACGGAAAA-CAAAGCAATTAATATCGTTTATCCTAATGAAGAGAATGTGTTTATAGTGCC
128 TTTCCATGCAAAAGAAAATC-ATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* * *
2755260 TAATCAGAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAAGCACGAACTTA
192 TAATCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTA
* * *
2755325 GACTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTACGAAACCAAAGCAACAATATGGTGTATC
257 GACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATC
* * *
2755390 CTTATGAGAAGACAAAGTTTATGGTGCCTAATCGTGAAAAGAATGGGGATTAGCCTGACAATTCA
322 CTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCT
* * *
2755455 TGTTTGTCATATTTAAGAGATAAACTTTACTTCTATCAAAAACAGCGGAAAGAAAACATTTTCTT
387 TGTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTT
* *
2755520 GTGCCCCCAAAGCATCAATGTCATG
452 GTGACACCAAAGCATCAATGTCATG
** * * *
2755545 TATCCTAATGAAGCAAATGTGTTCTTACCTCCCAATCACGAAAAGAATGGAGACTATTGCGAGAA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTACGAGAA
* * * *
2755610 TCGATGCTTTTCATAATTGTGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT
66 TCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAGGCAAAGAAAAGATTT
* * * *
2755675 CCATGCAAAAGAAAATCGTGAATATCGTTTATCCTAATGAAGAGAATGAGTTTATAGTGCCTAAT
131 CCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
*** * * * * * *
2755740 CATTGAAAGAATGAAAATCATTAGTAGAATTCTCGTTTGTCTCATTCGAGTCACGAGCTTAGACT
196 CACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACT
* * *
2755805 TTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCGAAGAATTAATATCGTGTATCCTTA
261 TTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTA
*
2755870 TGAGAAGACAAAGTTTATGGT-CCATAATCATGAAAAGAATGGGGATTAGCATCACAATTCTTGT
326 TGAGAAGACAAAGTTTATGGTGCC-TAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTGT
* *
2755934 TTGTTTTATTTAAGAGACAAACTTTACTTCTATCAAAAACTGCGGAAAGAAAACATTTTCTTGTG
390 TTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTG
2755999 AC-CTCAAAGCATCAATGTCATG
455 ACAC-CAAAGCATCAATGTCATG
* * * **
2756021 TATCCTAATGAAGGGGATGTG--CATT-GCTTCCTAATCTCGAAAA-AAGTGGAGACTTTTATAA
1 TATCCTAATGAAGGGAATGTGTTC-TTAGC-TCCCAATCTCGAAAAGAA-TGGAGACTATTACGA
* * * * * * * * *
2756082 GAATTGATCCTTGTCAT-TTTTTAAGGAAGACTTTTGATATTAAGGAAAACAATGCAAAGAAAAG
63 GAATCGATGCTTGTCATAATTAT-GGGATGAATTTTGATATTAAGGAAAATAAGGCAAAGAAAAG
* * * * * * *
2756146 ACTTCAATGGAAAAG-AAAGCAATCAATATCGTTTATCCTAATGAAGAGAATGTGTTTATAGTGC
127 ATTTCCATGCAAAAGAAAATC-ATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * *
2756210 CTGATCACAAAATGAATGAAGATCATTACTAGAATCCTCATTTGTCTCATTTGAGGCACGAACTT
191 CTAATCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTT
* * *
2756275 AGACTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTACGAAACCAAAGCAACAATATGGTGTAT
256 AGACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTAT
* *
2756340 CCTTATGAGAAGACAAAGTTTATGGTGCCTAATCGTGAAAAGAATGGGGATTAGCCTGACAATTC
321 CCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTC
* * * *
2756405 ATGTTTGTCATATTTAAGAGATAAACTTTACTTCTATCAAAAACAGCGGAAAGAAAACATTTTCT
386 TTGTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCT
* *
2756470 TGTGCCCCCAAAGCATCAATGTCATG
451 TGTGACACCAAAGCATCAATGTCATG
** *
2756496 TATCCTAATGAAGCAAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTGCGAGAA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTACGAGAA
* * * *
2756561 TCGATGCTTTTCATAATTGTGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT
66 TCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAGGCAAAGAAAAGATTT
* * * *
2756626 CCATGCAAAAGAAAATCGTGAATATCGTTTATCCTAATGAAGAGAATGAGTTTATAGTGCCTAAT
131 CCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
*** * * * * * *
2756691 CATTGAAAGAATGAAAATCATTAGTAGAATTCTCGTTTGTCTCATTCGAGTCACGAGCTTAGACT
196 CACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACT
* * *
2756756 TTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCGAAGAATTAATATCGTGTATCCTTA
261 TTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTA
* * *
2756821 TGAGAAGATAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATCACAATTCTTGTG
326 TGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTGTT
* * *
2756886 TGTCTTATTTCACAGACAAACTTTTCTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTGA
391 TGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTGA
* *
2756951 CCCCAAAGCGTCAATGTCATG
456 CACCAAAGCATCAATGTCATG
* * * * **
2756972 TATCCTAATGCAGGGGATGTG--CATT-GCTTCCTAATCTCGAAAA-AAGTGGAGACTTTTATAA
1 TATCCTAATGAAGGGAATGTGTTC-TTAGC-TCCCAATCTCGAAAAGAA-TGGAGACTATTACGA
* * ** * * * * *
2757033 GAATTGATGCATGTCATTTTTAAGGGAAGAATTTTGATATTAAGGAAAACAATGCAAATAAAAGA
63 GAATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAGGCAAAGAAAAGA
* * * *
2757098 TTTCAACA-G-AAAAG-AAAGCAATTAATATCATTCATCCTAATGAAGAGAATGTGTTTATAGTG
128 TTTC--CATGCAAAAGAAAATC-ATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
* *
2757160 CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTCATTTGTCTCATTTGAGGCACG-ACT
190 CCTAATCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACT
* *
2757224 TAGACTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATGGTGTA
255 TAGACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTA
*
2757289 TCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCGTGAAAAGAATGGGGATTAGCATGACAATT
320 TCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATT
* * * * *
2757354 CATGTTTGTCATATTTAAGAGATAAACTTTACTTCTATCAAAAACGACGGAAAGGAAACATTTTC
385 CTTGTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTC
* * * *
2757419 TTGTGCCCCCAGAGCATCAATGTCATA
450 TTGTGACACCAAAGCATCAATGTCATG
2757446 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTACGAGAA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTACGAGAA
* * * * *
2757511 TCGATGTTTTTCATAATTTTGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT
66 TCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAGGCAAAGAAAAGATTT
* *
2757576 CCATGCAAAAGAAAATCATGGATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
131 CCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
* * * * *
2757641 CACTAAAAGAATGAAAATCATTAGTAGAATCCTCGTTTGTCTCGTTTGAGGCACGAGCTTAGACT
196 CACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACT
** * *
2757706 TTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGAATTAATATCGTGTATCCTTA
261 TTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTA
* * * * *
2757771 TGAGAAGATAAAGTTTATGGCGCCTAATCTTGAAAACAATGGGGATTAGCATCACAATTCTTGTT
326 TGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTGTT
*
2757836 TGTCTTATTTAAGAGACAAACTTTACTTGTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTGA
391 TGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTGA
*
2757901 CCCCAAAGCATCAATGTCATG
456 CACCAAAGCATCAATGTCATG
* * * *
2757922 TATCCTAATGTAGGGAATGTGTTCTTAGCTTCGAATCTCGAAAAGAATGGAGACTATTATC-AAA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTA-CGAGA
** * * * * ** *
2757986 ATCGACACTTTTCATAATTATCGGATGAATTTTAATTTTTGGGAAAATAGGGCAAAGAAAAGATT
65 ATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAGGCAAAGAAAAGATT
* * *
2758051 TCCATGCAAAAGAAAATCGTGAATATCATTCATCATAATGAGGAGAATGTGTTTATAGTGCCTAA
130 TCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
* * *
2758116 TCATAAAAAGAATGAAGATCATTAGTAGAATCCTCGTTTGTATCATTTGAGGCAC-AAGCTTAGA
195 TCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAA-CTTAGA
* * * *
2758180 CTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACAAAACGAAAGAATCAATATCTTGTATCCT
259 CTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCT
* * * *
2758245 TATGAGATGGCAAAGTTTATGGTGCCTAATAATGAAAAGAATGAGGATTAGCATGACAATTCTTG
324 TATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTG
** * *
2758310 TTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGATGGAGAGAAAACATTTTCTTGC
389 TTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGT
*
2758375 GACACCAAAGCATGAATGTCATG
454 GACACCAAAGCATCAATGTCATG
* * * * *
2758398 TTTCCTAACGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAAACTCTTATGAGAA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTACGAGAA
* * * * * *
2758463 TCAATGCTAGTCATATTTAAGGGATGAATTTTGATATTATGGAAAA-CAGTGCAAAGAAAAGATT
66 TCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAG-GCAAAGAAAAGATT
* * * * * *
2758527 TCAATGGAAAAGAAAATCATCAATATCGTTTATCGTAATAAGGAGAATGTGTTTATAGTGCCTAA
130 TCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
* *
2758592 TCACAAAATA-TATGAAGATCATTACTAGAATCCTCATTTGTCTCATTTGAGGCACGAACTTAGA
195 TCACAAAA-AGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGA
* * *
2758656 CTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTACGAAACCCAAGCATCAATATCGTGTATCTT
259 CTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCT
*
2758721 TATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATCACAATTCTTG
324 TATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTG
* * * *
2758786 TTTGTCTTATTTATGAGACAAACTTTTCTTCTATAAAAAACGGTGGAAAGAAAACATTTTCTTGT
389 TTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGT
* *
2758851 GACCCCAAAGCGTCAATGTCATG
454 GACACCAAAGCATCAATGTCATG
* * * * **
2758874 TATCCTAATGTAGGGGATGTG--CATT-GCTTCCTAATCTCGAAAA-AAGTGGAGACTTTTATAA
1 TATCCTAATGAAGGGAATGTGTTC-TTAGC-TCCCAATCTCGAAAAGAA-TGGAGACTATTACGA
* * ** * * * *
2758935 GAATTGATGCATGTCATTTTTAAGGGAAGAATTTTGATATTAAGG-AAATCAATGCAAATAAAAG
63 GAATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAAT-AAGGCAAAGAAAAG
* * * * *
2758999 ATTTCAACA-G-AAAAG-AAAGCAATTAATATCATTCATCCTAATGAAGAGAATGTGGTTATAGT
127 ATTTC--CATGCAAAAGAAAATC-ATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT
* *
2759061 GCCTAATCCCAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAAC
189 GCCTAATCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAAC
* *
2759126 TTAGACTTTACAAAAATTGG-CAGCAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATGGTG
254 TTAGACTTTACAAAAATTGGTGA-CAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTG
* * *
2759190 CATCCTTATGAGAAGACAAAGTTTATGGTGCCTATTCGTGAAAAGAATGGGGATTAGCATGACAA
318 TATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAA
* * * *
2759255 TTCATGTTTGTCTTATTTAAGAGATAAACTTTACTTCTATCAAAAACGACGGAAAGGAAACATTT
383 TTCTTGTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTT
* *
2759320 TCTTGTGCCCCCAAAGCATCAATGTCATG
448 TCTTGTGACACCAAAGCATCAATGTCATG
2759349 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTACGAGAA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTACGAGAA
* * * * *
2759414 TCGATGTTTTTCATAATTTTGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT
66 TCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAGGCAAAGAAAAGATTT
* **
2759479 CCATGCAAAAGAAAATCATGGATATTGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
131 CCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
* * * * * *
2759544 CACTAAAAGAATGAAAATCATTAGTAGAATCCTCATTTGTCTCGTTTGAGGCACGAGCTTAGACT
196 CACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACT
** * * * *
2759609 TTACAAAAATTGGTGGGAGGAAAGCCTTTCTTACGAAACCAAAGAATTAATATCCTGTATCCTTA
261 TTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTA
* * *
2759674 TGAGAAGATAAAGTTTATGGTGCCTAATCATGAAAACAATGGGGATTAGCATCACAATTCTTGTT
326 TGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTGTT
* * * *
2759739 TGTCTTATTTAAGAGACAAACTTTACTTGTATCAAAAACGACGGAAAAAAAACATTTTCTTCTGA
391 TGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTGA
*
2759804 CCCCAAAGCATCAATGTCATG
456 CACCAAAGCATCAATGTCATG
* * * * *
2759825 TATCCTAATGTAGGGAA--TGTTCTTAGCTTCGAATCTTGAAAAGAATGGAGACTATTATC-AAA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTA-CGAGA
* * * * ** *
2759887 ATCGACGCTTTTCATAATTATCGGATGAATTTTGATTTTTGGGAAAATAGGGCAAAGAAAAGATT
65 ATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAGGCAAAGAAAAGATT
* * * *
2759952 TCCATGCAAAAGAAAATCGTGAATATCATTCATCATAATGAGGTGAATGTGTTTATAGTGCCTAA
130 TCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
* * * *
2760017 TCATAAAAAGAATGAAGATCATTAGTAGAATCCTCGTTTGTATCATTTGAGGCACGAGCTTAGAC
195 TCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGAC
* * *
2760082 TTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACAAAACCAAAGAATCAATATCTTGTATCCTT
260 TTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTT
* *
2760147 ATGAGATGACAAAGTTTATGGTGCCTAATAATGAAAAGAATGGGGATTAGCATGACAATTCTTGT
325 ATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTGT
* ** * *
2760212 TTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAACCGATGGAGAGAAAACATTTTCTTGCG
390 TTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTG
*
2760277 ACACCAAAGCATGAATGTCATG
455 ACACCAAAGCATCAATGTCATG
* * * * *
2760299 TTTCCTAACGAAGGGAATGTGTTCTTAGCTCCCAATCTCGTAAAGAATGGAGACTCTTATGAGAA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTACGAGAA
* * * * * *
2760364 TCGATGCTAGTCACATTTAAGGGATGAATTTTGATATTATGGAAAA-CAGTGCAAAGAAAAGATT
66 TCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAG-GCAAAGAAAAGATT
* * * * * *
2760428 TCAATGGAAAA-AAAATCATCAATATCGTTTATCGTAATAAGGAGAATGTGTTTATAGTGCCTAA
130 TCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
* *
2760492 TCACAAAATA-TATGAAGATCATTACTAGAATCCTCATTTGTCTCATTTGAGGCACGAACTTAGA
195 TCACAAAA-AGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGA
* * *
2760556 CTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTACGAAACCTAAGCATCAATATCGTGTATCTT
259 CTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCT
* *
2760621 TATGAGAAGACAAAGTTTATGGTGCCTAATCATGATAAGAATGGAGATTAGCATGACAATTCTTG
324 TATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTG
* * * * * *
2760686 TTTGTCTTATTTAAAAGACAAACTTTTCTTCTGTAAAAAACAGTGGAAAGAAAACATTTT-TATG
389 TTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCT-TG
* * *
2760750 CGACACCAAAGCATCAACGCCATG
453 TGACACCAAAGCATCAATGTCATG
* * ** *
2760774 TATCCTAATGAAGGAAATGTGTTGTTAGCTCCCAATCTTTAAAAGAATGGAGACTCTTACGAGAA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTACGAGAA
* * * * *
2760839 TCAAAGCTTGTCATAATTATGGGATGAATTTTGATATTAAAGAAAA-AAGGGAAAAAAAAGATTT
66 TCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAGGCAAAGAAAAGATTT
* *
2760903 CCATGCAAAAGAAAATCGTGAATATCATTTATCCTAATGAGGAGAATGTGTTTGTAGTGCCTAAT
131 CCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
* *
2760968 CACAATAGGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACT
196 CACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACT
* * *
2761033 TTACAAAAATTGGTGACAAGAAAGCCTTTCTTACAAAACCAAAGAATCAATAGCGTGTATCCTTA
261 TTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTA
**
2761098 TGAGAAGACAAAGTTTATGGTGCC-AATCATGAAAAGAATGGGGATTAGCATGACAATTCTAATT
326 TGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTGTT
* * * *
2761162 TGTCTTATTTAAGAGGCAAACTTTACTTTTATCAAAAACGGTGGAAAGAAAACATTTTCTTGCGA
391 TGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTGA
2761227 CACCAAAGCATCAATGTCATG
456 CACCAAAGCATCAATGTCATG
* * *
2761248 TTTCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGGGACTCA-AACGAGA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACT-ATTACGAGA
* * * *
2761312 ATCGATGCTTGTCATAGTTATGGGATGATTTTTTATATTAAGGAAAAT-TGCGCAAAGAAAAGAT
65 ATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAG-GCAAAGAAAAGAT
* * * * ** * *
2761376 TTCCTTGCAAAAGAAAACCGTGAAAATTGTTTATCCTAATAAGGAGAATGTTTTTATAGTGCCTA
129 TTCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * * *
2761441 ATCACAAAAAGAATAAAAATCCTTACTAGAAT-CTCCATTT-TCTCATTTGAGGCACGAACTTAG
194 ATCACAAAAAGAATGAAGATCATTACTAGAATCCT-CGTTTGTCTCATTTGAGGCACGAACTTAG
* * * * * *
2761504 ACTTTACGAAAATTAGTGGCAAGAAAGCCTTTCTTAGGAAACCAAAGCATCAGTATCGTGTATCT
258 ACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCC
* *
2761569 TTTTGAGAAGACAAAGTTTATGGTCCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTT
323 TTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTT
* * * *
2761634 GTTTGTCTTATTTAAGACACAAACTTTACTTCTATCGAACACGGTGGAAAGAAAACATTTTCTTG
388 GTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTG
* *
2761699 CGACACCAAAGCATCAATGTCTTG
453 TGACACCAAAGCATCAATGTCATG
* ** * * * * *
2761723 TATTCTTTTGAAAGGAATGTGTTCTTCGCTCCCAATCTCGAAAAGAATGGGGCCTCTTACGAGAA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTACGAGAA
* * * *
2761788 TCCAAGCTTGTCATAATTATGGGATGAATTTTGAAATTAAGGAAAAT-AGCGCAAAGGAAAGATT
66 TCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAG-GCAAAGAAAAGATT
* * **
2761852 TCCATGCAAAAGAAAATCGTGATTATTGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
130 TCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
* * * * *
2761917 TAAAAAAAAGAATAAAGATTATTACTAGAATCCTCGTTTGTCTCATTTGAGTCACGAACTTAGAC
195 TCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGAC
* * * *
2761982 TTTAGAAAAATTAGTGGCAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCATGTATCCTT
260 TTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTT
*
2762047 ATGAGAAGACAAAGTTTATGGT-CCATAATCATGAAAAGAATGGGGATTAGCATCACAATTCTTG
325 ATGAGAAGACAAAGTTTATGGTGCC-TAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTG
* *
2762111 TTTGTTTTATTTAAGAGACAAACTTTACTTCTATCAAAAACTGCGGAAAGAAAACATTTTCTTGT
389 TTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGT
*
2762176 GACCCCAAAGCATCAATGTCATG
454 GACACCAAAGCATCAATGTCATG
* * * **
2762199 TATCCTAATGAAGGGGATGTG--CATT-GCTTCCTAATCTCGAAAA-AAGTGGAGACTTTTATAA
1 TATCCTAATGAAGGGAATGTGTTC-TTAGC-TCCCAATCTCGAAAAGAA-TGGAGACTATTACGA
* * * * * * * *
2762260 GAATTGATCCTTGTCAT-TTTTTAGGGAAGACTTTTGATATTAAGGAAAACAATGCAAAGAAAAG
63 GAATCGATGCTTGTCATAATTAT-GGGATGAATTTTGATATTAAGGAAAATAAGGCAAAGAAAAG
* * * * * * *
2762324 ACTTCAATGGAAAAG-AAAGCAATCAATATCGTTTATCCTAATGAAGAGAATGTGTTTATAGTGC
127 ATTTCCATGCAAAAGAAAATC-ATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * *
2762388 CTGATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGTCGCATTTGAGGCACGAACTT
191 CTAATCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTT
* * *
2762453 AGACTTTTCAAAAATTGGTGGCAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATGGTGTAT
256 AGACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTAT
* *
2762518 CCTTATGAGAAGACAAAGTTTATGGTGCCTAATCGTGAATAGAATGGGGATTAGCATGACAATTC
321 CCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTC
* * * *
2762583 ATGTTTGTCTTATTTAAGAGATAAACTTTACTTCTATCAAAAACGACGGAAAGGAAACATTTTCT
386 TTGTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCT
* *
2762648 TGTGCCCCCAAAGCATCAATGTCATG
451 TGTGACACCAAAGCATCAATGTCATG
2762674 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTACGAGAA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTACGAGAA
* * * *
2762739 TCGATGCTCT-TCATAATTTTGAGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
66 TCGATGCT-TGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAGGCAAAGAAAAGATT
* * * * ** *
2762803 TCCATGCAAAAGAAAATCATGGATATCGTTTATCCTTATGAGAAG-ATAAAGTTTATGGTGCCTA
130 TCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAAT-GTGTTTATAGTGCCTA
** * ** * * * * * *
2762867 ATCA-AGAAAAGAATGGGGATTAGCA-TCACAATTCTTGTTTGTCTTATTTAAGAG-ACAAACTT
194 ATCACA-AAAAGAATGAAGATCATTACT-AGAATCCTCGTTTGTCTCATTTGAG-GCACGAACTT
* * * * * * * * *
2762929 -TACTTCTATCAAACA-CGGTGTA-AAGAAAACATTTTCTTCCGACACCAAAGCATCAATGTCAT
256 AGACTT-TA-CAAAAATTGGTG-ACAAGAAAGC-CTTTCTTACGAAACCAAAGCATCAATATCGT
* ** * * * * * * ***
2762991 GTATTCTTAT--GAAGGGAATGTGTTCTTCGCT-CCCAATC-TCGAAAAGAAT-GGAACCTCTTA
317 GTATCCTTATGAGAAGACAAAGT-TT-AT-GGTGCCTAATCAT-GAAAAGAATGGGGA-TTAGCA
* * * ** * * * * *** * ** *** ** *
2763051 CGAGAATCCAAGCTTGTCATAATTAAGTGTTGAATTTTGAAAT-TAAGGAAAATAGCGCAAAGAA
377 TGACAATTCTTGTTTGTCTTATTTAAGAGACAAACTTT-ACTTCTATCAAAAACGGCGGAAAGAA
* * ** * * * ** ** *
2763115 AAGA-TTTCTT-TGCAAAAGAAAACCGTGAAAATTTTT
441 AACATTTTCTTGTG--ACACCAAAGCATCAATGTCATG
* * * ** *
2763151 TATCCTAAT-AAGGAGAATGTGTT-TATAG-TGCCTAATCACAAAAAGAATAAAGA-TCATTACT
1 TATCCTAATGAAGG-GAATGTGTTCT-TAGCT-CCCAATCTCGAAAAGAATGGAGACT-ATTACG
* * * * * *
2763212 AGAATC-CTCGTTTGTC-TCATT-TGAGGCATGAACTTAGACT-TTACA--AAAATTAGTGGC-A
62 AGAATCGAT-GCTTGTCATAATTATG-GG-ATGAATTTTGA-TATTA-AGGAAAA-TA-AGGCAA
* * * ** * * * * * * ** * **
2763270 AG-AAAGCCTTT-CTTAG-GAAACCAAAGCATCAGTATCGTGTATCTTTTTGAGAAGACA-AAGT
120 AGAAAAG-ATTTCCAT-GCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGA-ATGTGT
* ** ** * ** * * * * *
2763331 TTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCA-TGACAATTCTTGTTTGTCTTATTTCAG
182 TTATAGTGCCTAATCACAAAAAGAATGAAGATCATTACT-AGAATCCTCGTTTGTCTCATTTGAG
* * * * * * * *
2763395 AG-AC-AAGCTT-TACTTCTATCGAACA-CGGTGGA-AAGAAAACATTTTCTTGCGACACCAAAG
246 -GCACGAA-CTTAGACTT-TA-CAAAAATTGGT-GACAAGAAAGC-CTTTCTTACGAAACCAAAG
* * * * * * * ** *
2763455 CATCAATGTCATGTATTCTTTTGA-AAG-GAATGTGTTCTTCACT-CCCAATC-TCGAAAAGAAT
305 CATCAATATCGTGTATCCTTATGAGAAGACAAAGT-TT-AT-GGTGCCTAATCAT-GAAAAGAAT
* ** *** * * ** * * * * ** * ** ***
2763516 GGAGCCTCTTACGAGAA-TCAAAGTTTGTCATAATTATGGGATGAATTTTGAAAT-TAAGGAAAA
366 GGGGATTAGCATGACAATTC-TTGTTTGTCTTATTTAAGAGACAAACTTT-ACTTCTATCAAAAA
** * * * * * ** * ** * * * * * *
2763579 TAGCGCAAAGGAAAGATTTCCATGCAAAAGAAAATCGTGAATATCGTT
429 CGGCGGAAAGAAAACATTTTCTTGTGACACCAAAGCATCAATGTCATG
* * * ** * *
2763627 TATCCTAATG-AGGAGAATGTGTT-TATAG-TGCCTAATCACAAAAAGAATAAAGATTATTACTA
1 TATCCTAATGAAGG-GAATGTGTTCT-TAGCT-CCCAATCTCGAAAAGAATGGAGACTATTACGA
* * * * * * * * * *
2763689 GAATC-CTCGTTTGTC-TCATT-TGAGTTACGGACTTAGACT-TT-AGAAAAATTAGTGGC-AAG
63 GAATCGAT-GCTTGTCATAATTATG-G-GATGAATTTTGA-TATTAAGGAAAA-TA-AGGCAAAG
*** * * * ** * * * * * * **
2763748 AAATCCTTT-CTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACA-AAGTTTAT
122 AAAAGATTTCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGA-ATGTGTTTAT
* ** ** * ** * * * * *
2763811 GGT-CCATAATCATGAAAAGAATGGGGATTAGCA-TCACAATTCTTGTTTGTCTTATTTAAGAG-
186 AGTGCC-TAATCACAAAAAGAATGAAGATCATTACT-AGAATCCTCGTTTGTCTCATTTGAG-GC
* * * * * * * * *
2763873 ACAAACTT-TACTTCTATTAAACA-CGGTGTA-AAGAAAACATTTTCTTCCGACACCAAAGCATC
248 ACGAACTTAGACTT-TA-CAAAAATTGGTG-ACAAGAAAGC-CTTTCTTACGAAACCAAAGCATC
* * * ** * * * * *
2763935 AATGTCATGTATTCTTAT--GAAGGGAATGTGTTCTTCGCT-CCCAATC-TCGAAAAGAAT-GGA
309 AATATCGTGTATCCTTATGAGAAGACAAAGT-TT-AT-GGTGCCTAATCAT-GAAAAGAATGGGG
* *** * * * ** * * * * ** * ** *** **
2763995 ACCTCTTACGAGAATCCAAGCTTGTCATAATTAAGGGATGAATTTTGAAAT-TAAGGAAAATAGC
370 A-TTAGCATGACAATTCTTGTTTGTCTTATTTAAGAGACAAACTTT-ACTTCTATCAAAAACGGC
* * * ** * * * ** ** *
2764059 GCAAAGAAAAGA-TTTCTT-TGCAAAAGAAAACCGTGAAAATTTTT
433 GGAAAGAAAACATTTTCTTGTG--ACACCAAAGCATCAATGTCATG
* * * * ** *
2764103 TATCCTAAT-AAGGAGAATGTGTT-TATAG-TGCCTATTCACAAAAAGAATAAAGA-TCATTACT
1 TATCCTAATGAAGG-GAATGTGTTCT-TAGCT-CCCAATCTCGAAAAGAATGGAGACT-ATTACG
* * * **
2764164 AGAATC-CT-CATTTGTC-TAATT-TGAGGCATGAACTTAGACT-TTACA--AAAATTGGTGGC-
62 AGAATCGATGC--TTGTCATAATTATG-GG-ATGAATTTTGA-TATTA-AGGAAAA-T-AAGGCA
* * * * ** * * * * * **
2764221 AAG-AAAGCCTTT-CTTACGAAACCAAAGCATCAATAT-AGTGTATCCTTATGAGAAGACA-AAG
119 AAGAAAAG-ATTTCCATGCAAAAGAAAATCATGAATATCA-TTTATCCTAATGAGGAGA-ATGTG
* *** ** * * * *
2764282 TTTATGGTGCCTAATCGTGAAAAGAATGGGGATTAGCATGAC-A-ATTCAT-GTTTGTCTTATTT
181 TTTATAGTGCCTAATCACAAAAAGAATGAAGA-T--CATTACTAGAATCCTCGTTTGTCTCATTT
* ** * * ** * * * ** ***
2764344 AAGAG-ATAAACTT-CACTACTATC-AAAACCGGCGGA-AAGAAAACATTTTCTTGTGCCCCCAA
243 GAG-GCACGAACTTAGACT-TTA-CAAAAATTGG-TGACAAGAAAGC-CTTTCTTACGAAACCAA
* * * ** * * * * *
2764405 AGCATCAATGTCATGTATCCTAAT--GAAGGGAATGTGTTCTTAGCT-CCCAATC-TCGAAAGGA
303 AGCATCAATATCGTGTATCCTTATGAGAAGACAAAGT-TT-AT-GGTGCCTAATCAT-GAAAAGA
* * ** * * * * * * * *** * * **
2764466 ATGGAGACTAATACGAGAA-TCGATGCTTT-TCATAATTATGTGTTGAATTTTGA-TTTTAAGGA
364 ATGGGGATTAGCATGACAATTC-TTG-TTTGTCTTATTTAAGAGACAAACTTT-ACTTCT-ATCA
* * * * * ** * ** * * * * ** *
2764528 ACATA-GG-GCAAAGAAAAGATTTCCATGCAAAAGAAAATCGTGAATATTGTT
425 A-AAACGGCGGAAAGAAAACATTTTCTTGTGACACCAAAGCATCAATGTCATG
* * * *
2764579 TATCCTAATG-AGGAGAATGTGTT-TATAG-TGCCTAATCACTG-AAAGAAT-GAAAATCATTA-
1 TATCCTAATGAAGG-GAATGTGTTCT-TAGCT-CCCAATCTC-GAAAAGAATGGAGACT-ATTAC
* * * * ** * * *
2764638 GTAGAATC-CTCGTTTGTC-TCATT-TGAGGCACGAGCTTAGACT-TTACA--AAAAT-TGGTGA
61 G-AGAATCGAT-GCTTGTCATAATTATG-GG-ATGAATTTTGA-TATTA-AGGAAAATAAGG-CA
* * * * ** ** * * * * * **
2764696 CAAG-AAAGCCTTT-CTTACGAAACCAAAGAATTAATATCGTTTATCCTTACGAGAAG-ATAAAG
119 -AAGAAAAG-ATTTCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAAT-GTG
* ** * ** * * * * *
2764758 TTTATGGTGCCTAATCA-AGAAAAGAATGGGGATTAGCA-TCACAATTCTTGTTTGTCTTATTTA
181 TTTATAGTGCCTAATCACA-AAAAGAATGAAGATCATTACT-AGAATCCTCGTTTGTCTCATTTG
* * * * * *** *
2764821 AGAG-ACAAACTT-TACTTCTATCAAAAA-CGACG-GA-AAGAAAACATTTTCTGGTG-ACCCTA
244 AG-GCACGAACTTAGACTT-TA-CAAAAATTG--GTGACAAGAAAGC-CTTTCTTACGAAACC-A
* * * * ** * * * *
2764880 AAGCATCAATGTCATGCATCCTAAT--GAAGGGAATGTGTTCTTAGCT-CCCAATC-TCGAAAAG
302 AAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGT-TT-AT-GGTGCCTAATCAT-GAAAAG
* * ** * * * * * * * ** * * * ***
2764941 AATGGAGACTATTATCAGAA-TCAATGCTTT-TCATAATTATGGGATGAATTTTGATTTTTGGGA
363 AATGGGGATTAGCATGACAATTC-TTG-TTTGTCTTATTTAAGAGACAAACTTT-ACTTCTATCA
* * ** * ** * * * * *
2765004 AAATA-GG-GCAAAGAAAAGA-TTTCTATGCAAAAGAAAATCGTGAATATCATT
425 AAA-ACGGCGGAAAGAAAACATTTTCT-TGTGACACCAAAGCATCAATGTCATG
* * * * *
2765055 TATCATAATG-AGGAGAATGTGTT-TATAG-TGTCTAATCAC-AGAAAGAATGAAGA-TCATTA-
1 TATCCTAATGAAGG-GAATGTGTTCT-TAGCT-CCCAATCTCGA-AAAGAATGGAGACT-ATTAC
* * * * ** * * *
2765114 GCAGAATC-CTCGTTTGT-ATCATT-TGAGGCACGAGCTTAGACT-TTACA--AAAAT-TGGTGA
61 G-AGAATCGAT-GCTTGTCATAATTATG-GG-ATGAATTTTGA-TATTA-AGGAAAATAAGG-CA
* * * ** ** * ** * * * * * *
2765172 CAAG-AAAGCCTTT-CTTACAAAACCAAAGAATCAATATTGTGTATCCTTATGTGAAG-ACGAAG
119 -AAGAAAAG-ATTTCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATG-TG
* * *** ** * ** * * * * *
2765234 TTTATGGTGCCTAATAATGTAAAGAATGGGGATTAGCA-TGACAATTCTTGTTTGTCTTATTTAA
181 TTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTACT-AGAATCCTCGTTTGTCTCATTTGA
* * * * * * * * *
2765298 GAG-ACAAACTT-TACTTCTATCAAAAA-CGATGGA-GAGAAAACTTTTTCTTGCGACACCAAAG
245 G-GCACGAACTTAGACTT-TA-CAAAAATTGGT-GACAAGAAAGC-CTTTCTTACGAAACCAAAG
* * * ** * * * *
2765359 CATCAATGTCATGTTTCC-TA--ACGAAGGGAATGTGTTCTTAGCT-CCCAATC-TCGAAAAGAA
305 CATCAATATCGTGTATCCTTATGA-GAAGACAAAGT-TT-AT-GGTGCCTAATCAT-GAAAAGAA
* * *** * * * * * * ** * **
2765419 TGGAGACTCTTACGAGAA-TCGATGCTTGTCATATTTAAGGGATGAATTTTGA-TAT-TATGGAA
365 TGGGGATTAGCATGACAATTC-TTGTTTGTCTTATTTAAGAGACAAACTTT-ACT-TCTATCAAA
* * * * ** * ** * *
2765481 AACAGTGCAAAGAAAAGATTTTAATG-GAAAAGAAAATCATCAATATCAT-
427 AACGGCGGAAAGAAAACATTTTCTTGTG-ACACCAAAGCATCAATGTCATG
* *** **** * * ** * * * * * ** * *
2765530 T-TTCTTGCGACCCCAAAGAATGTTATGGGAT--GAATTTTGATATTAA-GGA-A-AATTGCGCA
1 TATCCTAATGAAGGGAATG--TGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTACG--
** * * * ** * * * * * * **
2765589 AAGAAAAGATTTCCTT-ACAAAAGAAAACCGCGA-AAATTGTTTATCCTAATAAGGAGAATGTGT
62 -AGAATCGA--TGCTTGTC-ATA-ATTA-TGGGATGAATT-TTGA---TATTAAGGAAAATAAG-
** * ***** * ** * * *
2765652 TTATAGTGCCTA-ATCACA-AAAAGAATAAAAATCATTACTAGAATCCTCATTTGT-CTCAATTG
116 GCAAAGAAAAGATTTC-CATGCAA-AA-GAAAATC---A-T-GAAT-ATCATTTATCCT-AA-TG
* ***** * ** * * * *
2765714 AGGCACGAACT-TAGACTTTACAAAAATTAGTGGCAAGAAAGCCTTTCTTAGGAA-ACCA-AAGC
170 AGG-A-GAA-TGT-G--TTTATAGTGCCTAATCACAA-AAAG-------AATGAAGATCATTA-C
* * * * * * *
2765776 ATCAGTATCGT-GTATT-T-T--TTTG-GGAAGACAAAGTTTATGGTGCCTAATCACAAAAA---
220 -T-AGAATCCTCGT-TTGTCTCATTTGAGG--CACGAA-CTTA----GACT--TTACAAAAATTG
* * *** * * *** * * *
2765832 G-AATAA-AAATTATTAC-TA-GAATCCTCGTTTGTC-TCATTTGAGTCGCG-A-ACTTA-GACT
273 GTGACAAGAAAGCCTTTCTTACGAA-AC-C-AAAG-CATCA-AT-A-TCGTGTATCCTTATGA--
** * * * * * ** *
2765889 TTAGA-AAA-ATTAGTGGGAAGAAAGCCT-TTC-TTACAA-AA---CCA-AAGCAT--CAATATC
329 GAAGACAAAGTTTA-T--G--G--TGCCTAATCATGAAAAGAATGGGGATTAGCATGACAAT-TC
* * * * * * * *
2765943 GTGTAT-CCTTA--TGAGAAGACAAAGTTTA-TGGCCCATAATCATGAAAA-GAATGGGGATTAG
386 TTGTTTGTCTTATTTAAG-AGACAAACTTTACT---TC-T-ATCA--AAAACG---GCGGA-AAG
** * * ** * * *
2766003 CATCACA-ATTCTTGTTTGTCTTATTTAAGAG-A-CAAACTTTACCTC
439 -AAAACATTTTCTTG--TGAC--A-CCAA-AGCATC-AA-TGT-CATG
* ** ** * * * * * * **
2766048 TA-CCAAACACGGTGTAAAGAAAACATTTTCTT-GCGACACCAAAGCATC--AATGTCATGTATT
1 TATCC-TA-A---TG--AAGGGAATGTGTTCTTAGC-TC-CC-AATC-TCGAAAAG-AATGGAGA
* * * ** * ** * * * * *
2766109 CTTATGAAGGGAAT-G-TGTTCTTCGCTCCCAATCT-CGAAAAGAA--TGGA-ACCTCTTACGAG
54 C-TATTACGAGAATCGATG--CTT-G-TCATAAT-TATGGGATGAATTTTGATA--T-TAAGGAA
* * * *
2766168 AATCCAAGCTTGTCATAATTAAGGGATGAATTT---TGAAATTAAGGAAAATAGCGCAAAGAA-A
110 AAT--AAG---G-CA-AA-GAA---AAG-ATTTCCATGCAA--AA-GAAAAT----C-ATGAATA
** * * * * * * **
2766229 AGATTTCTTTACAAAAGAAAACCGTGAAAAT-T-TTT-TA-T-CCTAATAACGAGAATGTGTTTA
155 TCA-TT-TATCCTAATG---A--G-GAGAATGTGTTTATAGTGCCTAATCAC-A-AA-AAG---A
* * ** ** * *
2766289 TAGTGCTTA-ATCATAAAAAGAATAAAGATCATTACTAGAATCCTCGTTTGTCTCATTTCAGGCA
206 -A-TG--AAGATCATTACTAGAAT---CCTCGTT--T-G--T-CTC---------ATTTGAGGCA
* *
2766353 TGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATAT
249 CGAACTTAGACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATAT
* * **
2766418 AGTGCATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCGGGAAAAGAATGGGGATTAGCATG
314 CGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATG
* * * * * * *
2766483 ACAATTCATGTTTGTCTTATTTAAGACATAAACTTCACTTCTATTAAAACCGACGGAAAGAAAAC
379 ACAATTCTTGTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAAC
* *
2766548 ATTTTCTTGTGCCCCCAAAGCATCAATGTCATG
444 ATTTTCTTGTGACACCAAAGCATCAATGTCATG
* * *
2766581 TATCCTAATGATGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAAAATGGAG-CCACTTACGAGA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTA-TTACGAGA
* * * *
2766645 ATCCAAGCTTGTCATAATTATGGGATGAATTTTGAAATTAAGGAAAAT-AGCGCAAAGAAAATAT
65 ATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAG-GCAAAGAAAAGAT
* * *
2766709 TTCCATGCAAAAGAAAATCGTGAATATCGTTTATCCTAATGAGAAGAATGTGTTTATAGTGCCTA
129 TTCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
** * * * * ** *
2766774 ATCACTGAAAGAATGAAAATAATTAGTAGAATCGTCGTAGGTCTCATTTGAGGCACGACCTTAGA
194 ATCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGA
* * ** * *
2766839 CTTTAC-AAAATTGGTGTCAAGAAAGCCTTTCTTACGAAACCAAAGAATTTATGTCGTATATCCT
259 CTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCT
* * * *
2766903 TATGAGAAGATAAAGTTTATGGTGCCTAAACATGAAAAGAATAGGGATTAGCATCACAATTCTTG
324 TATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTG
* * *
2766968 TTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGACTGAAAGAAAACATTTTCTTCT
389 TTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGT
* *
2767033 GACCCCAAAGCATCAATGTCTTG
454 GACACCAAAGCATCAATGTCATG
* *
2767056 TATCCTAATGAAGGGAATGTGTTCCTA-CTCCCAATCTCAAAAAGAATGGAGACTATTATC-AGA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTA-CGAGA
* * * ** *
2767119 ATCGATCCTTTTCATAATTATGGGATGAATTTTGATTTTTGGGAAAATAGGGCAAAGAAAAGATT
65 ATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAGGCAAAGAAAAGATT
* * *
2767184 TCTATGCAAAAGAAAATCATGAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTCA
130 TCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
* * * *
2767249 TCACAGAAAGAATGAAGATCATTAGTAGAATCCTCGTTTGTATCATTTGAGGCACGAGCTTAGAC
195 TCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGAC
* *
2767314 TTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGAATTAATATCGTGTATCCTT
260 TTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTT
* *
2767379 ATGAGAAGATAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATCACAATTCTTGT
325 ATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTGT
* *
2767444 TTGTCTTATTTAAGAGACAAACTTTACTTCTATCAGAAACGGCAGAAAGAAAACATTTTCTTGTG
390 TTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTG
*
2767509 ACCCCAAAGCATCAATGTCATG
455 ACACCAAAGCATCAATGTCATG
* * * * **
2767531 TATCATAATGAAGGGGATGTG--CATTTGCTTCCTAATCTCGAAAA-AAGTGGAGACCT-TTATA
1 TATCCTAATGAAGGGAATGTGTTC-TTAGC-TCCCAATCTCGAAAAGAA-TGGAGA-CTATTACG
* ** * * * * *
2767592 AGAATTGATGCTTGTCATTTTTAAGGGAAGAATTTTGATATTAAGGAAAACAATGCAAAGAAAAT
62 AGAATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAGGCAAAGAAAAG
* * * * * * * *
2767657 ATTTCAACGGAAAAG-AAAGCAATCAATATCGTTTATCCAAATGAAGAGAATGTGTTTATAGTGC
127 ATTTCCATGCAAAAGAAAATC-ATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
*
2767721 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTT
191 CTAATCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTT
* *
2767786 AGACTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATAGTGTAT
256 AGACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTAT
* * * *
2767851 CCTTATAAGAAGATAAAGTTTATGGTGCCTAATCGTGAAAAGAATGTGGATTAGCATGACAATTC
321 CCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTC
* * * ** * *
2767916 ATGTTTGTCTTATTTAAGAGATAAACTTTACTTCTATCAAAAATGATGAAAAAAAAACATTTTCT
386 TTGTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCT
* *
2767981 TGTGCCCCCAAAGCATCAATGTCATG
451 TGTGACACCAAAGCATCAATGTCATG
*
2768007 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTAATACGAGAA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTACGAGAA
* * * *
2768072 TCGATGCTTTTCATAATTATGGGATGAATTTTGATTTTAAGGAACATAGGGCAAAGAAAAGATTT
66 TCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAGGCAAAGAAAAGATTT
* **
2768137 CCATGCAAAAGAAAATCGTGAATATTGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
131 CCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
** * * *
2768202 CACTGAAAGAATGAAAATCATTAGTAGAATCCTCGTTTGTCTCATTTGAGGCACGAGCTTAGACT
196 CACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACT
* * *
2768267 TTACAAAAATTGTTGACAAGAAAGCCTTTCTTACGAAACCAAA-CAATTAATATCGTTTATCCTT
261 TTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGC-ATCAATATCGTGTATCCTT
* * * * *
2768331 ATGAGAAGATAAAGTTTACGGTGCATAATCAAGAAAAGAATGGGGATTAGCATCACAATTCTTGT
325 ATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTGT
* *
2768396 TTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGACGGAAAGAAAACATTTTCTGGTG
390 TTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTG
*
2768461 ACCCCAAAGCATCAATGTCATG
455 ACACCAAAGCATCAATGTCATG
* * *
2768483 CATCCTAAAGAAGAGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTATC-AGA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTA-CGAGA
* * * ** *
2768547 ATCAATGCTTTTCATAATTATGGGATGAATTTTGATTTTTGGGAAAATAGGGCAAAGAAAAGATT
65 ATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAGGCAAAGAAAAGATT
* * *
2768612 TCTATGCAAAAGAAAATCGTGAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTAA
130 TCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
* * * * *
2768677 TCACAGAAAGAATGAAGACCATTAGTAGAATCCTCGTTTGTATCATTTGAGGCACGAGCTTAGAC
195 TCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGAC
* *
2768742 TTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACAAAACCAAAGAATCAATATCGTGTATCCTT
260 TTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTT
*
2768807 ATGAGAAGACAAAGTTTATGGTGCCTAATAATGAAAAGAATGGGGATTAGCATGACAATTCTTGT
325 ATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTGT
** * * *
2768872 TTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGATGGAGAGAAAACTTTTTCTTGCG
390 TTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTG
*
2768937 ACACCAAAGCATCAATGTCAGG
455 ACACCAAAGCATCAATGTCATG
* * * * * *
2768959 TTTCCTAACGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGGATGGATATTCTTACGAGAA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTACGAGAA
* * * *
2769024 TCGATGCTTGTCATATTTAAGGGATGAATTTTGATATTATGGAAAA-CAGTGCAAAGAAAAGATT
66 TCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAG-GCAAAGAAAAGATT
* * * * *
2769088 TCAATGGAAAAGAAAATCATCAATATCGTTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAA
130 TCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
* * *
2769153 TCACAAAATGAATGAAGTTCATTACTAGAATCTTCGTTTGTCTCATTTGAGGCACGAACTTAGAC
195 TCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGAC
* * *
2769218 TTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTAAGAAACCAAAGCATCAATATAGTGTATCCTT
260 TTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTT
* * * *
2769283 ATCAGAAGATAAAGTTTATGGTGCCTAATCATGAAAAGAATGCGGATTAGCATGACAATTCATGT
325 ATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTGT
* * * *
2769348 TTGTCTTATTTAAGAGATAAACTTTACTTCTATCAAAAACGACGAAAACAAAACATTTTCTTGTG
390 TTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTG
* *
2769413 CCCCCAAAGCATCAATGTCATG
455 ACACCAAAGCATCAATGTCATG
2769435 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTACGAGAA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTACGAGAA
* * * * * * *
2769500 TCGATGATTTTCACAATTTTAGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT
66 TCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAGGCAAAGAAAAGATTT
* * * *
2769565 CCATGCTAAAGAAACTCGTGAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTAAT
131 CCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
* * * *
2769630 CACAGAAAGAATGAAGATCATTAGTAGAATCCTCGTTTGTAC-CATTTGAGGAACGAGCTTAGAC
196 CACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGT-CTCATTTGAGGCACGAACTTAGAC
* * *
2769694 TTTACAAAAATTGGTGAGAAGAAAGCCTTTCTTACGAAACCAAAGAATTAATATCGTGTATCCTT
260 TTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTT
* * *
2769759 ATGAGAAGATAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCTTCACAATTCTTGT
325 ATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTGT
* * *
2769824 TTGCCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGACAGAAAGAAAACATTTTCTTGTG
390 TTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTG
* *
2769889 ACCCCAAAGCATCAATGTCATA
455 ACACCAAAGCATCAATGTCATG
* * * * * * **
2769911 TATCATAAAGAAGGGGATGTG--CATTTGCTTCCTAATCTCGAAAA-AAGTGGAGACTTTTATAA
1 TATCCTAATGAAGGGAATGTGTTC-TTAGC-TCCCAATCTCGAAAAGAA-TGGAGACTATTACGA
* ** * * * *
2769973 GAATTGATGCTTGTCATTTTTAAGGGAAGAATTTTGATATTAAGGAAAACAATGCAAAGAAAAGA
63 GAATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAGGCAAAGAAAAGA
* * * * *
2770038 TTTCAATGGAAAAG-AAAGCAATCAATATCATTTATCCTAATGAAGAGAATGTGTTTATAGTGCC
128 TTTCCATGCAAAAGAAAATC-ATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
*
2770102 TAATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTA
192 TAATCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTA
* *
2770167 GACTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATAGTGTATC
257 GACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATC
* * * *
2770232 CTTATGAGAAGATAAAGTTTATGGTGCCTAATCGTGAAAAGAATGTGGATTAGCATGACAATTCA
322 CTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCT
* * * *
2770297 AGTTTGTCTTATTTAAGAGATAAACTTTACTTCTATCAAAAACGACGAAAAGAAAACATTTTCTT
387 TGTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTT
* * *
2770362 GCGCCCCCAAAGCATCAATGTCATG
452 GTGACACCAAAGCATCAATGTCATG
* *
2770387 TTTCCTAATGAAGGGAATGCGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTACGAGAA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTACGAGAA
* * * * * * *
2770452 TCGATGATTTTCACAATTTTAGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT
66 TCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAGGCAAAGAAAAGATTT
* * *
2770517 CCATGCCAAAGAAAATCGTGAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTAAT
131 CCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
* * * * *
2770582 CACAGAAAGAATGAAGATCATTAGTAGAATCCTTGTTTGTAC-CATTTGAGGAACGAGCTTAGAC
196 CACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGT-CTCATTTGAGGCACGAACTTAGAC
* * *
2770646 TTTACAAAAATTGGTGAGAAGAAAGCCTTTCTTACGAAACCAAAGAATTAATATCGTGTATCCTT
260 TTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTT
* * *
2770711 ATGAGAAGATAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCTTCACAATTCTTGT
325 ATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTGT
* * **
2770776 TTGCCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGACACAAAGAAAACATTTTCTTGTG
390 TTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTG
* *
2770841 ACCCCAAAGCATCAATGTCATA
455 ACACCAAAGCATCAATGTCATG
* * * * * * **
2770863 TATCATAAAGAAGGGGATGTG--CATTTGCTTCCTAATCTCGAAAA-AAGTGGAGACTTTTATAA
1 TATCCTAATGAAGGGAATGTGTTC-TTAGC-TCCCAATCTCGAAAAGAA-TGGAGACTATTACGA
* ** * * * *
2770925 GAATTGATGCTTGTCATTTTTAAGGGAAGAATTTTGATATTAAGGAAAACAATGCAAAGAAAAGA
63 GAATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAGGCAAAGAAAAGA
* * * * * * *
2770990 TTTCAACGGAAAAG-AAAGCAATCAATATCGTTTATCCTAATGAAGAGAATGTGTTTATAGTGCC
128 TTTCCATGCAAAAGAAAATC-ATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* *
2771054 TAATCACAAAATGAATGAAGATAATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTA
192 TAATCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTA
* * * *
2771119 GACTTTACAAAAATTGGTGGCAAGAAAGCCCTTCTTACAAAACCAAAGCATCAATATAGTGTATC
257 GACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATC
* * * *
2771184 CTTATGAGAAGATAAAGTTTATGGTGCCTAATCGTGAAAAGAATGTGGATTAGCATGACAATTCA
322 CTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCT
* * * * *
2771249 AGTTTGTCTTATTTAAGAGATAAACTTTACTTCTATCAAAAACGACGAAAAGAAAACATTTTCAT
387 TGTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTT
* *
2771314 GTGCCCCCAAAGCATCAATGTCATG
452 GTGACACCAAAGCATCAATGTCATG
* *
2771339 TTTCCTAATGAAGGGAATGCGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTACGAGAA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTACGAGAA
* * * * * * *
2771404 TCGATGCTTTTCTTAATTTTAGGATGAATTTTCATTTTAAGGAAAATAGGGCAAAGAAAAGATTT
66 TCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAGGCAAAGAAAAGATTT
* * *
2771469 CCATGCAAAAGAAAATCGTGAATATCGTTTATCCTATTGAGGAGAATGTGTTTATAGTGCCTAAT
131 CCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
** * * *
2771534 CACTGAAAGAATGAAAATCATTAGTAGAATCCTCGTTTGTCTCATTTGAGGCACGAGCTTAGACT
196 CACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACT
** * *
2771599 TTACAAAAATTGGTGGGAAGAAAGCCTTTCTTTA-GAAACCAAAGAATTAATATCGTGTATCCTT
261 TTACAAAAATTGGTGACAAGAAAGCCTTTC-TTACGAAACCAAAGCATCAATATCGTGTATCCTT
* * * * *
2771663 ATGAGAAGATAAAGTTTACGGTGCCTAATCAGGAAAAGAATGAGGATTAGCATCACAATTCTTGT
325 ATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTGT
* *
2771728 TTGTCTTATTTAGGAGACAAACTTTACTTCTATCAAAAACGGTGGAAAGAAAACATTTTCTTGTG
390 TTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTG
* * *
2771793 ACCCCAAAGCTTCAATGTCTTG
455 ACACCAAAGCATCAATGTCATG
* *
2771815 TATCCTAATGTAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATCGAGACTATTATC-AGA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTA-CGAGA
* * * * ** *
2771879 ATAGACGCTTTTCATAATTATGGGATGAATTTTGATTTTTGGGAAAAT-AGGTAAAGAAAAGATT
65 ATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAGGCAAAGAAAAGATT
* * *
2771943 TCTATGCAAAAGAAAATCGTGAATATCATTTATCGTAATGAGGAGAATGTGTTTATAGTGCCTAA
130 TCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
* * * * *
2772008 TCATAGAAAGAATGAAGATCATTAGTAGAATCCTCGTTTGTATCATTTGAGGCACGAGCTTAGAC
195 TCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGAC
* * * *
2772073 TTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACAAAACGAAAGAATCAATATCGTGTATCTTT
260 TTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTT
2772138 ATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTGT
325 ATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTGT
* * *
2772203 TTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAATGGTGGAAAGAAAACATTTTCTTGCG
390 TTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTG
2772268 ACACCAAAGCATCAATGTCATG
455 ACACCAAAGCATCAATGTCATG
* * * * *
2772290 TTTCCTAACGAAGGGAATGTGTTCTTAGC-CCCTAATCCCGAAAGGAATGGAGACTCTTACGAGA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCC-AATCTCGAAAAGAATGGAGACTATTACGAGA
* * * *
2772354 ATCGATGCTTGTCATATTTAAGGGATGAATTTTGATATTAAGGAAAATTACGCAAAGAAAAGATT
65 ATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAGGCAAAGAAAAGATT
* * * *
2772419 TCCTTACATGAAAAGATTTCAATGGAAAAGAAAATCATCAATACCGTTTATCCTAATAAGGAGAA
130 T-C---CAT-----G----C-----AAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAA
* * *
2772484 TGTGTTTATAGTGCCTAATCACAAAAAGAATAAAAATCATTACTAGAATCCTCGTTTGTCTCTTT
177 TGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATT
* * *
2772549 TGAGGCACGAACTTAGACTTTACAAAAATTAGTGGCAAGAAAGCCTTTCTTAGGAAACCAAAGCA
242 TGAGGCACGAACTTAGACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCA
* *
2772614 TCAGTATCGTGTAT-CTTTTGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGAT
307 TCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGAT
* * *
2772678 TAGCATGACAATTCTTGTTTGTCTTATTTAAGAGACAAACTTTACTTCTATGAAACACGGTGGAA
372 TAGCATGACAATTCTTGTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAA
* * *
2772743 AGAAAACATTTTCTTGTGACACCAACGCATTAATGCCATG
437 AGAAAACATTTTCTTGTGACACCAAAGCATCAATGTCATG
* * * * * * * *
2772783 TATTCTTATGATGGGAATATGTTCTTCGCTCCTAATCTCGAAAAGAATGGAGCCTCTTACGAGAA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTACGAGAA
* * * * *
2772848 TCGAAGCTTGTCATAATTTTGGGATGAATTTTGAAATTAAGGAAAAT-AGTGCAAAAAAAATATT
66 TCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAG-GCAAAGAAAAGATT
* * **
2772912 TCCATGCAAAAGAAAATCTTGAATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTAACTAA
130 TCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
*
2772977 TCACAAAAAGAATAAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGAC
195 TCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGAC
* *
2773042 TTTACAAAAATTAGT-AGCAAGAAAGCCTTTCTTATGAAACCAAAGCATCAATATCGTGTATCCT
260 TTTACAAAAATTGGTGA-CAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCT
* * *
2773106 TATGAGAAGACAAAGTTTATGGTCCCTAATTATGAAAAGAATGGGGATTAGCATGACAATTCTTC
324 TATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTG
* * * *
2773171 TTTGTCTTATTTAAGAGACAAACTTTACTTCTATCGAACACGGTGGAAAGAAAACATTTTCTTGC
389 TTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGT
2773236 GACACCAAAGCATCAATGTCATG
454 GACACCAAAGCATCAATGTCATG
* ** * * * *
2773259 TATTCTTTTGAAGGGAATATGTTCTTCA-CTCCTAATCTCGAAAAGAATGGAGCCTCTTACGAGA
1 TATCCTAATGAAGGGAATGTGTTCTT-AGCTCCCAATCTCGAAAAGAATGGAGACTATTACGAGA
* * * *
2773323 ATCGAAGCTTGTCATAATTTTGGGATGAATTTTGAAATTAAGGAAAAT-AGCGAAAAGAAAAGAT
65 ATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAG-GCAAAGAAAAGAT
* * *
2773387 TTCCAAT-CAAAAGAAAATCGTGAATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGGCT
129 TTCC-ATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
* * *
2773451 AATCACAAAAA-ACATAAAGATTATTACTAGAATCCTCGTTTGTCTCATTTGAGTCACGAACTTA
193 AATCACAAAAAGA-ATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTA
* * *
2773515 GACTTTAGAAAAATTAGTGGCAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATC
257 GACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATC
* *
2773580 CTTATGAGAAGAGAAAGTTTATGGT-CCATAATCATGAAAAGAGTGGGGATTAGCATGACAATTC
322 CTTATGAGAAGACAAAGTTTATGGTGCC-TAATCATGAAAAGAATGGGGATTAGCATGACAATTC
* * * *
2773644 TTGTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAACACAGTGGAAAGAAAACATTTTCG
386 TTGTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCT
* * * *
2773709 TGCGACACCAACGCATTAATGGCATG
451 TGTGACACCAAAGCATCAATGTCATG
* * * * * *
2773735 TATTCTTATGAAGGGAATGTGTTCTTCGCTCCCAATCTCGAAAAGAAAGGAGCCTCTTACGAGAA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTACGAGAA
* * * * * * *
2773800 TCGAAGCTTGTCATAATTATGAGATGAATTTTCAAATTAAGGAAAAT-AGCGGAGAGAAAATATT
66 TCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAG-GCAAAGAAAAGATT
* *
2773864 TCCATGCAAAAGAAAATCGTGAATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
130 TCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
* * *
2773929 TCACAAAAAGAATAAAGATTATTACTAGAATCCTCGTTTGTCTCATTTGAGTCACGAACTTAGAC
195 TCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGAC
* * * * *
2773994 TTTACAAAAATTAGTGTCAAGAAAGCCTTCCTTGCGAAACCAAAGCATCAATATTGTGTATCCTT
260 TTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTT
* *
2774059 ATGAGAAGACAAAGTTTATGGTCCCTAATCATGAAAAGAGTGGGGATTAGCATGACAATTCTTGT
325 ATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTGT
* * * * *
2774124 TTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAACACAGTGGAAAGAAAACATTTTCGTGCG
390 TTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTG
* * *
2774189 ACACCAACGCATTAATGGCATG
455 ACACCAAAGCATCAATGTCATG
* * * * *
2774211 TATTCTTATGAAGGGAATGTGTTCTTCA-CTCCCAATCTCGAAAAGAAAGGAGCCTCTTACGAGA
1 TATCCTAATGAAGGGAATGTGTTCTT-AGCTCCCAATCTCGAAAAGAATGGAGACTATTACGAGA
* * * * * *
2774275 ATCGAAGCTTGTCATAATTATGAGATGAATTTTGAAATTAAGGAAAAT-AGCGGAGAGAAAATAT
65 ATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAG-GCAAAGAAAAGAT
* *
2774339 TTCCATGCAAAAGAAAATCGTGAATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
129 TTCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * * * *
2774404 ATCAAAAAAAGAATAAAGATCATTACTAGAATCCTCGTTTGTATCATTTGAGGCACGAGCATAGA
194 ATCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGA
* *
2774469 CTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGAATTAATATCGTGTATCCT
259 CTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCT
* *
2774534 TATGAGAAGATAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATCACAATTCTTG
324 TATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTG
*
2774599 TTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAATGAAAACATTTTCTTGT
389 TTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGT
*
2774664 GACCCCAAAGCATCAATGTCATG
454 GACACCAAAGCATCAATGTCATG
* * * *
2774687 TATCCTACTGAAGGGAATGTGTTCCTAGCTCTCAATCTCGAAAAGAATTGAGACTATTATC-AGA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTA-CGAGA
* * ** * *
2774751 ATCGATGCTTTTCATAATTATGGGATGAATTTTGATTTTTGGGAAAATAGGGCAAATAAAAGATT
65 ATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAGGCAAAGAAAAGATT
* * * * *
2774816 TCCACGCAAAAGAAAATCGTGAATATCATTTATCATAATGAGCATAATGTGTTTATAGTGCCTAA
130 TCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
* * *
2774881 TCA-AAGAAAGAATGAAGATCATTAGTAGAATCCTCGTTTGTATCATTTGAGGCACGAGCTTAGA
195 TCACAA-AAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGA
* *
2774945 CTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGAATTAATATCGTGTATCCT
259 CTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCT
* *
2775010 TATGAGAAGATAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATCACAATTCTTG
324 TATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTG
* * * *
2775075 TTTGTCTTATTTAAGAGACAAACCTTACTTATATCAAAAACAGCGGAAAGAAAACATTTTCTTCT
389 TTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGT
*
2775140 GACCCCAAAGCATCAATGTCATG
454 GACACCAAAGCATCAATGTCATG
* * * * * * **
2775163 TATCCTAACGAAGGGGATGTG--CATTTGCTTCCTAATCTC-AAAAAAAGTGGAGACTTTTATAA
1 TATCCTAATGAAGGGAATGTGTTC-TTAGC-TCCCAATCTCGAAAAGAA-TGGAGACTATTACGA
* ** * * * * *
2775225 GAATTGATGCTTGTCATTTTTAAGCGAAGAATTTTGATATTAAGGAAAACAATGCAAAGAAAAGA
63 GAATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAGGCAAAGAAAAGA
* * * * * * * *
2775290 TTTCAACGGAAAAG-AAAGCAATCAATATCGTTTATCCTAATGAAGATAATGTGTTTATAGTGCC
128 TTTCCATGCAAAAGAAAATC-ATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* *
2775354 TAATCACAAAATGAATGAAGATAATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTA
192 TAATCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTA
** * * *
2775419 GACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACAAAACCAAAGAATTAATATCGTGTATC
257 GACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATC
* * * * *
2775484 CTGATGAGAAGATAAAGTTTATGGCGCCTAATCATGAAAAGAATCGGGATTAGCATCACAATTCT
322 CTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCT
*
2775549 TGTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAATGAAAACATTTTCTT
387 TGTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTT
*
2775614 GTGACCCCAAAGCATCAATGTCATG
452 GTGACACCAAAGCATCAATGTCATG
* * ** * * **
2775639 TATCCTAGTGAAGGGAATGTGTTCCTAGCTCCCAATCTTAAAAAGAATTGAGAGTATTATTAGAA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTACGAGAA
* * ** * *
2775704 TCGATGCTTTTCATAATTATCGGATGAATTTTGAT-TTTTGCGAAAATAGGGCAAATAAAAGATT
66 TCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAG-GAAAATAAGGCAAAGAAAAGATT
* * * *
2775768 TCCACGCAAAAGAAAATCGTGAATATCATTTTTCATAATGAGGAGAATGTGTTTATAGTGCCTAA
130 TCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
* * * * *
2775833 TCACAAAAAGAATGAAGATCATTAGTAGAATCCTCATTTGTATCATTTGAGGCATGAGCTTAGAC
195 TCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGAC
* * *
2775898 TTCACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGAATTAATATCGTGTATCCTT
260 TTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTT
* * * *
2775963 ATGAGAAGATAAAGTTTATGGTGCCTAATCATGAAAGGAATGAGGATTAGCATCACAATTCTTGT
325 ATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTGT
2776028 TTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTG
390 TTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTG
* *
2776093 ACCCCAAAGCATCAATGCCATG
455 ACACCAAAGCATCAATGTCATG
* * *
2776115 TATCCTAAT-ATAGGGAATGTGTTCTTAGCTCGCAATCACGAAAAGAATGGAGACTACTATC-AG
1 TATCCTAATGA-AGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTA-CGAG
* * * * **
2776178 AGTTC-ACGCTTTTCATAATTATGGGATGAATTTTGATTTTTGGGAAAATAAGGCAAAGAAAAGA
64 A-ATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAGGCAAAGAAAAGA
* *
2776242 TTTCCATGCAAAAGAAAATCGTGAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCCT
128 TTTCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
* * * * * *
2776307 AATCACAGAAAGAATGAAGATCATTAGTACAATCCTCGTTTGTATCATTTAAGGCACGAGCTTAG
193 AATCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAG
* * * * * *
2776372 ACTTTACAAAAATTGGTGACAAGAAAGCATTTCTTACAAAACGAAAGAATCAATATCTTGTATCT
258 ACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCC
* *
2776437 TTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTACCATCACAATTCTT
323 TTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTT
*
2776502 GTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGTGGAAAGAAAACATTTTCTTG
388 GTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTG
*
2776567 CGACACCAAAGCATCAATGTCATG
453 TGACACCAAAGCATCAATGTCATG
* ** * * * *
2776591 TATTCTTTTGAAGGGAATGTGTTCTTCGCTCCCAGTCTCGAAAAGAATGGAGCCTCTTACGAGAA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTACGAGAA
* * * *
2776656 TCCAAGCTTGTCATAATTATGGGATGAATTTTGAAATTAAGGAAAAT-AGCGTAAAGAAAAGATT
66 TCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAG-GCAAAGAAAAGATT
** *
2776720 TCCATGCAAAAGAAAATCATGAATATCATTTATCAGAATGAGGAGAATGTGTTTATGGTGCCTAA
130 TCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
* * * *
2776785 TCACAAAAAGAATAAAGATTATTACTAGAATCCTCGTTTGTTTCATTTGAGTCACGAACTTAGAC
195 TCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGAC
* * *
2776850 TTTACAAAAATTAGTGTCAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTT
260 TTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTT
*
2776915 ATGAGAAGACAAAGTTTATGGTCCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTGT
325 ATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTGT
* * * *
2776980 TTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAACACGGTGCAAAGAAAACATTTTCTTGCG
390 TTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTG
* *
2777045 ACACCAAAGCATCACTATCATG
455 ACACCAAAGCATCAATGTCATG
* ** * * * *
2777067 TATTCTTTTGAAGGGAATGTGTTCTTCGCTCCCAATCTCAAAAAGAATGGAGCCTCTTACGAGAA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTACGAGAA
* * * *
2777132 TCGAAGCTTGTCACAATTATGGGATGAATTTTGAAATTAAGGAAAAT-AGCGTAAAGAAAAGATT
66 TCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAG-GCAAAGAAAAGATT
* *
2777196 TCCATGCAAAAGAAAATCATGAATATCATTTATCATAATGAGGAGAATGTGTTTATGGTGCCTAA
130 TCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
* * *
2777261 TCACAAAAAGAATAAAGATTATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAGCTTAGAC
195 TCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGAC
* *
2777326 TTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGAATTAATATCGTGTATCCTT
260 TTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTT
*
2777391 ATGTGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATCG-CAATTCTTG
325 ATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCAT-GACAATTCTTG
* *
2777455 TTTGTCTTATCTAAGAGACAAACTTTACTTCTATCAAAAATGGCGGAAAGAAAACATTTTCTTGT
389 TTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGT
* *
2777520 GACCCCAAAGCATCAATGCCATG
454 GACACCAAAGCATCAATGTCATG
* *
2777543 TATCCTAAT-ATAGGGAATGTGTTCTTAGCTCCCAATCACGAAAAGAATGGAGACTACTATC-AG
1 TATCCTAATGA-AGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTA-CGAG
* * * * * **
2777606 AGTTGACGCTTTTCATAATTATGGGATGAATTTTGATTTTTGGGAAAATAAGGCAAAGAAAAGAT
64 AATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAGGCAAAGAAAAGAT
* *
2777671 TTCCATGCAAAAGAAAATCGTGAATATCATTTATCGTAATGAGGAGAATGTGTTTATAGTGCCTA
129 TTCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * * * * * *
2777736 ATCACAGAAAGAATGAAGATCATTAGTACAATCCTCGTTTGTATCATTTAAGGCACGAGCTTAAA
194 ATCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGA
* * *
2777801 CTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACAAAACCAAAGAATCAATATCGTGTATCTT
259 CTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCT
* *
2777866 TATGAGAAGACAAAGTTTTTGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGAAAATTCTTG
324 TATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTG
** * *
2777931 TTTGTCTTATTGGAGAGACAAACTTTACTTCTATCAAAAACGGTGGAAAGAAAACATTTTCTTGC
389 TTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGT
2777996 GACACCAAAGCATCAATGTCATG
454 GACACCAAAGCATCAATGTCATG
* * * * *
2778019 TTTCCTAAAGAAGGGAATGTGTTCTTAGC-CCCTAATCCCGAAAGGAATGGAGACTCTTACGAGA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCC-AATCTCGAAAAGAATGGAGACTATTACGAGA
* * * *
2778083 ATCGATGCTTGTCATATTTAAGGGATGAATTTTGAAATTAAGGAAAAT-AGCGTAAAGAAAAGAT
65 ATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAG-GCAAAGAAAAGAT
* *
2778147 TTCCATGCAAAAGAAAATCATGAATATCATTTATCATAATGAGGAGAATGTGTTTATGGTGCCTA
129 TTCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * *
2778212 ATCACAAAAAGAATAAAGATTATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAGCTTAGA
194 ATCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGA
* * *
2778277 CTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTATGAAACCAAAGAATTAATATCGTGTATCCT
259 CTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCT
* *
2778342 TATGTGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATAGGGATTAGCATCG-CAATTCTT
324 TATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCAT-GACAATTCTT
*
2778406 GTTTGTCTTATCTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTG
388 GTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTG
* *
2778471 TGACCCCAAAGCATCAATGCCATG
453 TGACACCAAAGCATCAATGTCATG
* * *
2778495 TATCCTAAT-ATAGGGAATGTGTTCTTAGCTCGCAATCACGAAAAGAATGGAGACTACTATC-AG
1 TATCCTAATGA-AGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTA-CGAG
* * * * **
2778558 AGTTC-ACGCTTTTCATAATTATGGGATGAATTTTGATTTTTGGGAAAATAAGGCAAAGAAAAGA
64 A-ATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAGGCAAAGAAAAGA
* *
2778622 TTTCCATGCAAAAGAAAATCGTGAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCCT
128 TTTCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
* * * * * *
2778687 AATCACAGAAAGAATGAAGATCATTAGTACAATCCTCGTTTGTATCATTTAAGGCACGAGCTTAG
193 AATCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAG
* * *
2778752 ACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACAAAACCAAAGAATCAATATCGTGTATCT
258 ACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCC
*
2778817 TTATGAGAAGACAAAGTTTTTGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTT
323 TTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTT
* *
2778882 GTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAATGGTGGAAAGAAAACATTTTCTTG
388 GTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTG
*
2778947 CGACACCAAAGCATCAATGTCATG
453 TGACACCAAAGCATCAATGTCATG
* * * * *
2778971 TTTCCTAACGAAGGGAATGTGTTCTTAGC-CCCTAATCCCGAAAGGAATGGAGACTCTTACGAGA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCC-AATCTCGAAAAGAATGGAGACTATTACGAGA
* * * * *
2779035 ATCGATGCTTGTCATATTTAAGGGATGAATTTTGATA-TAATGGAAAA-CAGTGTAGAGAAAAGA
65 ATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAA-GGAAAATAAG-GCAAAGAAAAGA
* * * * * *
2779098 TTTCAATGGAAAAGAAAATCATCAATACCGTTTATCCTAATAAGGAGAATGTGTTTATAGTGCCT
128 TTTCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
* * *
2779163 AATCACAAAAAGAATAAAGATTATTA-TAGAATCCTCGTTTGTCTCATTTGAGTCACGAACTTAG
193 AATCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAG
* **
2779227 -----ACAAAAATTAGTGGTAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCC
258 ACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCC
*
2779287 TTATGAGAAGACAAAGTTTATGGTCCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTT
323 TTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTT
* * *
2779352 GTTTGTCTTATTTAAGACACAAACTTTACTTCTATCAAATACGGTGGAAAGAAAACATTTTCTTG
388 GTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTG
*
2779417 CGACACCAAAGCATCAATGTCATG
453 TGACACCAAAGCATCAATGTCATG
* ** * * * * *
2779441 TATTCTTTTGAACGGAATGTGTTCTTTGCTCCCAATCTTGAAAAGAATGGAGCCTCTTACGAGAA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTACGAGAA
* * * *
2779506 TCCAAGCTTGTCATAATTATGGGATGAATTTTGAAATTAAGGAAAAT-AGCGTAAAGAAAAGATT
66 TCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAG-GCAAAGAAAAGATT
*
2779570 TCCATGCAAAAGAAAATCATGAATATCATTTATCATAATGAGGAGAATGTGTTTAT-GTTGCCTA
130 TCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG-TGCCTA
* * *
2779634 ATCACAAAAAGAATAAAGATTATTACTAGAATCCTCGTTTGTCTCATTTGAGTCACGAACTTAGA
194 ATCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGA
* * *
2779699 CTTTACAAAAATTAGTGTCAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCT
259 CTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCT
*
2779764 TATGAGAAGACAAAGTTTATGGTCCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTG
324 TATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTG
* *
2779829 TTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAACACAGG-GCAAAGAAAACATTTTCTTG
389 TTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAAC-GGCGGAAAGAAAACATTTTCTTG
* * *
2779893 CGACACCAAAGCATCACTATCATG
453 TGACACCAAAGCATCAATGTCATG
* ** * * * *
2779917 TATTCTTTTGAAGGGAATGTGTTCTTCGCTCCCAATCTCGAAAAGAAAGGAGCCTCTTACGAGAA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTACGAGAA
* * * *
2779982 TCGAAGCTTGTCACAATTATGGGATGAATTTTGAAATTAAGGAAAAT-AGCGTAAAGAAAAGATT
66 TCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAG-GCAAAGAAAAGATT
* *
2780046 TCCATGCAAAAGAAAATCATGAATATCATTTATCATAATGAGGAGAATGTGTTTATGGTGCCTAA
130 TCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
* * *
2780111 TCACAAAAAGAATAAAGATTATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAGCTTAGAC
195 TCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGAC
* * *
2780176 TTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGAATTAATATCGTGTATCTTT
260 TTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTT
* *
2780241 ATGTGAAGACAAAGTTTATGGTGCCTAATCATGAAATGAATGGGGATTAGCATCG-CAATTCTTG
325 ATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCAT-GACAATTCTTG
* * *
2780305 TTTGTCTTATCTAAGAGACAAACTTTACTTCTATCAAAAATGGTGGAAAGAAAACATTTTCTTGT
389 TTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGT
* *
2780370 GACCCCAAAGCATCAATGCCATG
454 GACACCAAAGCATCAATGTCATG
* *
2780393 TATCCTAAT-ATAGGGAATGTGTTCTTAGCTCCCAATCACGAAAAGAATGGAGACTACTATC-AG
1 TATCCTAATGA-AGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTA-CGAG
* * * * **
2780456 AGTTC-ACGCTTTTCATAATTATGGGATGAATTTTGATTTTTGGGAAAATAAGGCAAAGAAAAGA
64 A-ATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAGGCAAAGAAAAGA
* *
2780520 TTTCCATGCAAAAGAAAATCGTGAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCCT
128 TTTCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
* * * * * * *
2780585 AATCACAGAAAGAATGAAGATCATTAGTACAATCCTCGTTTGTATCATTTAAGGCACGAGCTTAA
193 AATCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAG
* * *
2780650 ACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACAAAACCAAAGAATCAATATCGTGTATCT
258 ACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCC
* *
2780715 TTATGAGAAGACAAAGTTTTTGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGAAAATTCTT
323 TTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTT
** *
2780780 GTTTGTCTTATTGGAGAGACAAACTTTACTTCTATCAAAAACGGTGGAAAGAAAACATTTTCTTG
388 GTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTG
*
2780845 CGACACCAAAGCATCAATGTCATG
453 TGACACCAAAGCATCAATGTCATG
* * * * * *
2780869 TTTCCTAAAGAAGGGAATGTGTTCTTAGC-CCCTAATCCCTAAAGGAATGGAGACTCTTACGAGA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCC-AATCTCGAAAAGAATGGAGACTATTACGAGA
* * * *
2780933 ATCGATGCTTGTCATATTTAAGGGATGAATTTTGAAATTAAGGAAAAT-AGCGTAAAGAAAAGAT
65 ATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAG-GCAAAGAAAAGAT
* *
2780997 TTCCATGCAAAAGAAAATCATGAATATCATTTATCATAATGAGGAGAATGTGTTTATGGTGCCTA
129 TTCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * *
2781062 ATCACAAAAAGAATAAAGATTATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAGCTTAGA
194 ATCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGA
* * *
2781127 CTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACAAAACCAAAGAATTAATATCGTGTATCCT
259 CTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCT
*
2781192 TATGTGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATCG-CAATTCTT
324 TATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCAT-GACAATTCTT
*
2781256 GTTTGTCTTATCTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTG
388 GTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTG
* *
2781321 TGACCCCAAAGCATCAATGCCATG
453 TGACACCAAAGCATCAATGTCATG
* *
2781345 TATCCTAAT-ATAGGGAATGTGTTCTTAGCTCCCAATCACGAAAAGAATGGAGACTACTATC-AG
1 TATCCTAATGA-AGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTA-CGAG
* * * * * **
2781408 AGTTGACGCTTTTCATAATTATGGGATGAATTTTGATTTTTGGGAAAATAAGGCAAAGAAAAGAT
64 AATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAGGCAAAGAAAAGAT
* *
2781473 TTCCATGCAAAAGAAAATCGTGAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTA
129 TTCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * * * * *
2781538 ATCACAGAAAGAATGAAGATCATTAGTACAATCCTCGTTTGTATCATTTAAGGCACGAGCTTAGA
194 ATCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGA
* * *
2781603 CTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACAAAACCAAAGAATCAATATCGTGTATCTT
259 CTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCT
* *
2781668 TATGAGAAGACAAAGTTTTTGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGAAAATTCTTG
324 TATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTG
** * * *
2781733 TTTGTCTTATTGGAGAGACAAACTTTACTTCTATCAAGAACGGTGGAAAGAAAACATTTTCTTGC
389 TTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGT
2781798 GACACCAAAGCATCAATGTCATG
454 GACACCAAAGCATCAATGTCATG
* * * * *
2781821 TTTCCTAAAGAAGGGAATGTGTTCTTAGC-CCCTAATCCCGAAAGGAATGGAGACTCTTACGAGA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCC-AATCTCGAAAAGAATGGAGACTATTACGAGA
* * * *
2781885 ATCGATGCTTGTCATATTTAAGGGATGAATTTTGAAATTAAGGAAAAT-AGCGTAAAGAAAAGAT
65 ATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAG-GCAAAGAAAAGAT
* *
2781949 TTCCATGCAAAAGAAAATCATGAATATCATTTATCATAATGAGGAGAATGTGTTTATGGTGCCTA
129 TTCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * *
2782014 ATCACAAAAAGAATAAAGATTATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAGCTTAGA
194 ATCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGA
* *
2782079 CTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGAATTAATATCGTGTATCCT
259 CTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCT
* *
2782144 TATGTGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATCG-TAATTCTT
324 TATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCAT-GACAATTCTT
* *
2782208 GTTTGTCTTATCTAAGAGACAAACTTTACTTCTATCAAAAATGGCGGAAAGAAAACATTTTCTTG
388 GTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTG
*
2782273 TGAGC-CCAAAGCATCAATGCCATG
453 TGA-CACCAAAGCATCAATGTCATG
* *
2782297 TATCCTAAT-ATAGGGAATGTGTTCTTAGCTCCCAATCACGAAAAGAATGGAGACTACTATC-AG
1 TATCCTAATGA-AGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTA-CGAG
* * * * * **
2782360 AGTTGACGCTTTTCATAATTATGGGATGAATTTTGATTTTTGGGAAAATAAGGCAAAGAAAAGAT
64 AATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAGGCAAAGAAAAGAT
** *
2782425 TTCCATGCAAAAGAAAATTGTGAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTA
129 TTCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * * * * *
2782490 ATCACAGAAAGAATGAAGATCATTAGTACAATCCTCGTTTGTATCATTTAAGGCACGAGCTTAGA
194 ATCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGA
* * *
2782555 CTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACAAAACCAAAGAATCAATATCGTGTATCTT
259 CTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCT
* *
2782620 TATGAGAAGACAAAGTTTTTGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGAAAATTCTTG
324 TATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTG
** * * *
2782685 TTTGTCTTATTGGAGAGACAAACTTTACTTCTATCAAGAACGGTGGAAAGAAAACATTTTCTTGC
389 TTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGT
2782750 GACACCAAAGCATCAATGTCATG
454 GACACCAAAGCATCAATGTCATG
* * * * *
2782773 TTTCCTAAAGAAGGGAATGTGTTCTTAGC-CCCTAATCCCGAAAGGAATGGAGACTCTTACGAGA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCC-AATCTCGAAAAGAATGGAGACTATTACGAGA
* * * *
2782837 ATCGATGCTTGTCATATTTAAGGGATGAATTTTGAAATTAAGGAAAAT-AGCGTAAAGAAAAGAT
65 ATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAG-GCAAAGAAAAGAT
* *
2782901 TTCCATGCAAAAGAAAATCATGAATATCATTTATCATAATGAGGAGAATGTGTTTATGGTGCCTA
129 TTCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * *
2782966 ATCACAAAAAGAATAAAGATTATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAGCTTAGA
194 ATCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGA
* * *
2783031 CTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACAAAACCAAAGAATTAATATCGTGTATCCT
259 CTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCT
*
2783096 TATGTGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATCG-CAATTCTT
324 TATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCAT-GACAATTCTT
* *
2783160 GTTTGTCTTATCTAAGAGACAAACTTTACTTCTATCAAAAATGGCGGAAAGAAAACATTTTCTTG
388 GTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTG
*
2783225 TGAGC-CCAAAGCATCAATGCCATG
453 TGA-CACCAAAGCATCAATGTCATG
* *
2783249 TATCCTAAT-ATAGGGAATGTGTTCTTAGCTCCCAATCACGAAAAGAATGGAGACTACTATC-AG
1 TATCCTAATGA-AGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTA-CGAG
* * * * * **
2783312 AGTTGACGCTTTTCATAATTATGGGATGAATTTTGATTTTTGGGAAAATAAGGCAAAGAAAAGAT
64 AATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAGGCAAAGAAAAGAT
* *
2783377 TTCCATGCAAAAGAAAATCGTGAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTA
129 TTCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * * * * *
2783442 ATCACAGAAAGAATGAAGATCATTAGTACAATCCTCGTTTGTATCATTTAAGGCACGAGCTTAGA
194 ATCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGA
* * *
2783507 CTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACAAAACCAAAGAATCAATATCGTGTATCTT
259 CTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCT
* *
2783572 TATGAGAAGACAAAGTTTTTGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGAAAATTCTTG
324 TATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTG
** * * *
2783637 TTTGTCTTATTGGAGAGACAAACTTTACTTCTATCAAGAACGGTGGAAAGAAAACATTTTCTTGC
389 TTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGT
2783702 GACACCAAAGCATCAATGTCATG
454 GACACCAAAGCATCAATGTCATG
* * * * *
2783725 TTTCCTAAAGAAGGGAATGTGTTCTTAGC-CCCTAATCCCGAAAGGAATGGAGACTCTTACGAGA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCC-AATCTCGAAAAGAATGGAGACTATTACGAGA
* * * *
2783789 ATCGATGCTTGTCATATTTAAGGGATGAATTTTGAAATTAAGGAAAAT-AGCGTAAAGAAAAGAT
65 ATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAG-GCAAAGAAAAGAT
* *
2783853 TTCCATGCAAAAGAAAATCATGAATATCATTTATCATAATGAGGAGAATGTGTTTATGGTGCCTA
129 TTCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * *
2783918 ATCACAAAAAGAATAAAGATTATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAGCTTAGA
194 ATCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGA
* *
2783983 CTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGAATTAATATCGTGTATCCT
259 CTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCT
* *
2784048 TATGTGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATCG-TAATTCTT
324 TATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCAT-GACAATTCTT
* *
2784112 GTTTGTCTTATCTAAGAGACAAACTTTACTTCTATCAAAAATGGCGGAAAGAAAACATTTTCTTG
388 GTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTG
*
2784177 TGAGC-CCAAAGCATCAATGCCATG
453 TGA-CACCAAAGCATCAATGTCATG
* *
2784201 TATCCTAAT-ATAGGGAATGTGTTCTTAGCTCCCAATCACGAAAAGAATGGAGACTACTATC-AG
1 TATCCTAATGA-AGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTA-CGAG
* * * * * **
2784264 AGTTGACGCTTTTCATAATTATGGGATGAATTTTGATTTTTGGGAAAATAAGGCAAAGAAAAGAT
64 AATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAGGCAAAGAAAAGAT
* *
2784329 TTCCATGCAAAAGAAAATCGTGAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTA
129 TTCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * * * * *
2784394 ATCACAGAAAGAATGAAGATCATTAGTACAATCCTCGTTTGTATCATTTAAGGCACGAGCTTAGA
194 ATCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGA
* * *
2784459 CTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACAAAACCAAAGAATCAATATCGTGTATCTT
259 CTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCT
* *
2784524 TATGAGAAGACAAAGTTTTTGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGAAAATTCTTG
324 TATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTG
** * * *
2784589 TTTGTCTTATTGGAGAGACAAACTTTACTTCTATCAAGAACGGTGGAAAGAAAACATTTTCTTGC
389 TTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGT
2784654 GACACCAAAGCATCAATGTCATG
454 GACACCAAAGCATCAATGTCATG
* * * * *
2784677 TTTCCTAAAGAAGGGAATGTGTTCTTAGC-CCCTAATCCCGAAAGGAATGGAGACTCTTACGAGA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCC-AATCTCGAAAAGAATGGAGACTATTACGAGA
* * * *
2784741 ATCGATGCTTGTCATATTTAAGGGATGAATTTTGAAATTAAGGAAAAT-AGCGTAAAGAAAAGAT
65 ATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAG-GCAAAGAAAAGAT
* *
2784805 TTCCATGCAAAAGAAAATCATGAATATCATTTATCATAATGAGGAGAATGTGTTTATGGTGCCTA
129 TTCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * * *
2784870 ATCACAAAAAGAATAAAGATTATTACTAGAATCCTCGTTTGTCTCAATTGAGGCACGAGCTTAGA
194 ATCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGA
* * *
2784935 CTTTACAAAAATTGGTGACAAGAAAGGCTTTCTTACGAAACCAAAGAATTAATATCGTGTATCCT
259 CTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCT
*
2785000 TATGTGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATCG-CAATTCTT
324 TATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCAT-GACAATTCTT
*
2785064 GTTTGTCTTATCTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTG
388 GTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTG
* *
2785129 TGACCCCAAAGCATCAATGCCATG
453 TGACACCAAAGCATCAATGTCATG
* * **
2785153 TATCCTAAT-ATAGGGAATGTGTTCTTAGCTCCCAATCACTAAAAGAATGGAGACTACGATC-AG
1 TATCCTAATGA-AGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTA-CGAG
* * * * * *
2785216 AGTTGACGCTTTTCATAATTATGGGATGAATTTTGATTTTTAGGAAAATAAGGCAAAGAAAAGAT
64 AATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAGGCAAAGAAAAGAT
* *
2785281 TTCCATGCAAAAGAAAATCGTGAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTA
129 TTCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * * * *
2785346 ATCACAGAAAGAATGAAGATCATTAGTACAATCCTCGTTTGTATCATTTGAGTCACGAACTTAGA
194 ATCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGA
* * * *
2785411 CTTTACAAAAATTAGTGTCAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCTT
259 CTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCT
2785476 TATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTG
324 TATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTG
* * *
2785541 TTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAATGGTGGAAAGAAAACATTTTCTTGC
389 TTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGT
2785606 GACACCAAAGCATCAATGTCATG
454 GACACCAAAGCATCAATGTCATG
* * * * *
2785629 TTTCCTAACGAAGGGAATGTGTTCTTAGC-CCCTAATCCCGAAAGGAATGGAGACTCTTACGAGA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCC-AATCTCGAAAAGAATGGAGACTATTACGAGA
* * * * *
2785693 ATCGATGCTTGTCATATTTAAGGGATGAATTTTGATA-TAATGGAAAA-CAGTGTAGAGAAAAGA
65 ATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAA-GGAAAATAAG-GCAAAGAAAAGA
* * * * * *
2785756 TTTCAATGGAAAAGAAAATCATCAATACCGTTTATCCTAATAAGGAGAATGTGTTTATAGTGCCT
128 TTTCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
* * *
2785821 AATCACAAAAAGAATAAAGATTATTA-TAGAATCCTCGTTTGTCTCATTTGAGTCACGAACTTAG
193 AATCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAG
* **
2785885 -----ACAAAAATTAGTGGTAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCC
258 ACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCC
* *
2785945 TTATGAGAAGACAAAGTTTATGGTCCCTAATCACGAAAAGAATGGGGATTAGCATGACAATTCTT
323 TTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTT
* * *
2786010 GTTTGTCTTATTTAAGACACAAACTTTACTTCTATCAAATACGGTGGAAAGAAAACATTTTCTTG
388 GTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTG
2786075 TGACACCAAAGCATCAATGTCATG
453 TGACACCAAAGCATCAATGTCATG
* ** * * * * *
2786099 TATTCTTTTGAAGGGAATGTGTTCTTCGCTCCCAATCTCGAAAAAAAAGGAGCCTCTTACGAGAA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTACGAGAA
* * * *
2786164 TCGAAGCTTGTCACAATTATGGGATGAATTTTGAAATTAAGGAAAAT-AGCGTAAAGAAAAGATT
66 TCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAG-GCAAAGAAAAGATT
* *
2786228 TCCATGCAAAAGAAAATCATGAATATCATTTATCATAATGAGGAGAATGTGTTTATGGTGCCTAA
130 TCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
* * *
2786293 TCACAAAAAGAATAAAGATTATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAGCTTAGAC
195 TCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGAC
* * *
2786358 TTTACAAAAATTAGTGTCAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTT
260 TTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTT
*
2786423 ATGAGAAGACAAAGTTTATGGTCCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTGT
325 ATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTGT
* * * * *
2786488 TTGTCTCATTTAAGACACAAACTTTACTTCTATCAAATACGGTGGAAAGAAAACATTTTCTTGCG
390 TTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTG
2786553 ACACCAAAGCATCAATGTCATG
455 ACACCAAAGCATCAATGTCATG
* ** *** * * * *
2786575 TATTCTTTTGAACAAAATGTGTTCTTCGCTCCCAATCTTGAAAAGAATGGAGCCTCTTACGAGAA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTACGAGAA
* * * *
2786640 TCCAAGCTTGTCATAATTATGGGATGAATTTTGAAATTAAGGAAAAT-AGCGTAAAGAAAAGATT
66 TCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAG-GCAAAGAAAAGATT
*
2786704 TCCATGCAAAAGAAAATCATGAATATCATTTATCATAATGAGGAGAATGTGTTTAT-GTTGCCTA
130 TCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG-TGCCTA
* * *
2786768 ATCACAAAAAGAATAAAGATTATTACTAGAATCCTCGTTTGTCTCATTTGAGTCACGAACTTAGA
194 ATCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGA
* * * *
2786833 CTTTACAAAAATTAGTGTCAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCTT
259 CTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCT
2786898 TATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTG
324 TATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTG
* * *
2786963 TTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAATGGTGGAAAGAAAACATTTTCTTGC
389 TTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGT
2787028 GACACCAAAGCATCAATGTCATG
454 GACACCAAAGCATCAATGTCATG
* * * * *
2787051 TTTCCTAACGAAGGGAATGTGTTCTTAGC-CCCTAATCCCGAAAGGAATGGAGACTCTTACGAGA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCC-AATCTCGAAAAGAATGGAGACTATTACGAGA
* * * * *
2787115 ATCGATGCTTGTCATATTTAAGGGATGAATTTTGATA-TAATGGAAAA-CAGTGTAGAGAAAAGA
65 ATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAA-GGAAAATAAG-GCAAAGAAAAGA
* * * * * *
2787178 TTTCAATGGAAAAGAAAATCATCAATACCGTTTATCCTAATAAGGAGAATGTGTTTATAGTGCCT
128 TTTCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
* * *
2787243 AATCACAAAAAGAATAAAGATTATTA-TAGAATCCTCGTTTGTCTCATTTGAGTCACGAACTTAG
193 AATCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAG
* ** *
2787307 -----ACAAAAATTAGTGGTAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCC
258 ACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCC
*
2787367 TTATGAGAAGACAAAGTTTATGGTCCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTT
323 TTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTT
* * * *
2787432 GTTTGTCTTATTTAAGACACAAACTTTACTTCTATCAAATACAGTGGAAAGAAAACATTTTCTTG
388 GTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTG
*
2787497 CGACACCAAAGCATCAATGTCATG
453 TGACACCAAAGCATCAATGTCATG
* ** * * *
2787521 TATTCTTTTGAAGGGAATGTGTTCTTCGCTCCCAATCTCGAAAAGAATGGAGCCTCTTACGAGAA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTACGAGAA
* * * * *
2787586 TCTAAGCTTGTCATAATTATGGGATGAATTTTGAAATTAGGGAAAAT-AGCGTAAAGAAAAGATT
66 TCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAG-GCAAAGAAAAGATT
* *
2787650 TCCATGCAAAAGAAAATCATGAATATCATTTATCATAATGAGGAGAATGTGTTTATGGTGCCTAA
130 TCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
* * *
2787715 TCACAAAAAGAATAAAGATTATTACTAGAATCCTCGTTTGTCTCATTTGAGTCACGAACTTAGAC
195 TCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGAC
* *
2787780 TTTACAAAAATTAGTGTCAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTT
260 TTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTT
*
2787845 ATGAGAAGACAAAGTTTATGGTCCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTGT
325 ATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTGT
* * * *
2787910 TTGTCTTATTT-A-AGACAAACTTTACTTCTATCAAACACGGTGCAAAGAAAACATTTTCTTGCG
390 TTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTG
* *
2787973 ACACCAAAGCATCACTATCATG
455 ACACCAAAGCATCAATGTCATG
* ** * * * * *
2787995 TATTCTTTTGAAGGGAATGTGTTCTTCGCTCCCAATCTCGAAAAAAAAGGAGCCTCTTACGAGAA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTACGAGAA
* * * *
2788060 TCGAAGCTTGTCACAATTATGGGATGAATTTTGAAATTAAGGAAAAT-AGCGTAAAGAAAAGATT
66 TCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAG-GCAAAGAAAAGATT
*
2788124 TCCATGCAAAAGAAAATCATGAATATCATTTATCATAATGAGGAGAATGTGTTTAT-GTTGCCTA
130 TCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG-TGCCTA
* * *
2788188 ATCACAAAAAGAATAAAGATTATTACTAGAATCCTCGTTTGTCTCATTTGAGTCACGAACTTAGA
194 ATCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGA
* * *
2788253 CTTTACAAAAATTAGTGTCAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCT
259 CTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCT
*
2788318 TATGAGAAGACAAAGTTTATGGTCCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTG
324 TATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTG
* * *
2788383 TTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAACACGGTGCAAAGAAAACATTTTCTTGT
389 TTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGT
* *
2788448 GACACCAAAGCATCACTATCATG
454 GACACCAAAGCATCAATGTCATG
* ** * * * *
2788471 TATTCTTTTGAAGGGAATGTGTTCTTCGCTCCCAATCTCGAAAAGAAAGGAGCCTCTTACGAGAA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTACGAGAA
* * * *
2788536 TCGAAGCTTGTCACAATTATGGGATGAATTTTGAAATTAAGGAAAAT-AGCGTAAAGAAAAGATT
66 TCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAG-GCAAAGAAAAGATT
* *
2788600 TCCATGCAAAAGAAAATCATGAATATCATTTATCATAATGAGGAGAATGTGTTTATGGTGCCTAA
130 TCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
* * *
2788665 TCACAAAAAGAATAAAGATTATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAGCTTAGAC
195 TCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGAC
* * *
2788730 TTTACAAAAATTGGTGACAAGAAAGCCTTTCTTATGAAACCAAAGAATTAATATCGTGTATCCTT
260 TTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTT
*
2788795 ATGTGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATCG-CAATTCTTG
325 ATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCAT-GACAATTCTTG
*
2788859 TTTGTCTTATCTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGT
389 TTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGT
* *
2788924 GACCCCAAAGCATCAATGCCATG
454 GACACCAAAGCATCAATGTCATG
* * *
2788947 TATCCTAAT-ATAGGGAATGTGTTCTTAGCTCGCAATCACGAAAAGAATGGAGACTACTATC-AG
1 TATCCTAATGA-AGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTA-CGAG
* * * * **
2789010 AGTTC-ACGCTTTTCATAATTATGGGATGAATTTTGATTTTTGGGAAAATAAGGCAAAGAAAAGA
64 A-ATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAGGCAAAGAAAAGA
** *
2789074 TTTCCATGCAAAAGAAAATTGTGAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCCT
128 TTTCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
* * * * * * *
2789139 AATCACAGAATGAATGAAGATCATTAGTACAATCCTCGTTTGTATCATTTAAGGCACGAGCTTAG
193 AATCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAG
* * * *
2789204 ACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACAAAACGAAAGAATCAATATCGTGTATCT
258 ACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCC
2789269 TTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTT
323 TTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTT
* * *
2789334 GTTTGTCTTATTTAAGAGTCAAACTTTACTTCTATCAAAAATGGTGGAAAGAAAACATTTTCTTG
388 GTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTG
*
2789399 CGACACCAAAGCATCAATGTCATG
453 TGACACCAAAGCATCAATGTCATG
* * * * *
2789423 TTTCCTAACGAAGGGAATGTGTTCTTAGC-CCCTAATCCCGAAAGGAATGGAGACTCTTACGAGA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCC-AATCTCGAAAAGAATGGAGACTATTACGAGA
* * * * *
2789487 ATCGATGCTTGTCATATTTAAGGGATGAATTTTGATA-TAATGGAAAA-CAGTGTAGAGAAAAGA
65 ATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAA-GGAAAATAAG-GCAAAGAAAAGA
* * * * * *
2789550 TTTCAATGGAAAAGAAAATCATCAATACCGTTTATCCTAATAAGGAGAATGTGTTTATAGTGCCT
128 TTTCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
* * *
2789615 AATCACAAAAAGAATAAAGATTATTA-TAGAATCCTCGTTTGTCTCATTTGAGTCACGAACTTAG
193 AATCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAG
* **
2789679 -----ACAAAAATTAGTGGTAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCC
258 ACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCC
*
2789739 TTATGAGAAGACAAAGTTTATGGTCCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTT
323 TTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTT
* * *
2789804 GTTTGTCTTATTTAAGACACAAACTTTACTTCTATCAAATACGGTGGAAAGAAAACATTTTCTTG
388 GTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTG
2789869 TGACACCAAAGCATCAATGTCATG
453 TGACACCAAAGCATCAATGTCATG
* ** * * * * * *
2789893 TATTCTTTTGAAGGGAATGTGTTCTTCGCTCCCAATCTTGAAAAAAAAGGAGCCTCTTACGAGAA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTACGAGAA
* * * *
2789958 TCGAAGCTTGTCACAATTATGGGATGAATTTTGAAATTAAGGAAAAT-AGCGTAAAGAAAAGATT
66 TCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAG-GCAAAGAAAAGATT
*
2790022 TCCATGCAAAAGAAAATCATGAATATCATTTATCATAATGAGGAGAATGTGTTTAT-GTTGCCTA
130 TCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG-TGCCTA
* * *
2790086 ATCACAAAAAGAATAAAGATTATTACTAGAATCCTCGTTTGTCTCATTTGAGTCACGAACTTAGA
194 ATCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGA
* * *
2790151 CTTTACAAAAATTAGTGTCAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCT
259 CTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCT
*
2790216 TATGAGAAGACAAAGTTTATGGTCCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTG
324 TATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTG
* * *
2790281 TTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAACACGGTGCAAAGAAAACATTTTCTTGT
389 TTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGT
* *
2790346 GACACCAAAGCATCACTATCATG
454 GACACCAAAGCATCAATGTCATG
* ** * * * *
2790369 TATTCTTTTGAAGGGAATGTGTTCTTCGCTCCCAATCTCGAAAAGAAAGGAGCCTCTTACGAGAA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTACGAGAA
* * * *
2790434 TCGAAGCTTGTCACAATTATGGGATGAATTTTGAAATTAAGGAAAAT-AGCGTAAAGAAAAGATT
66 TCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAG-GCAAAGAAAAGATT
* *
2790498 TCCATGCAAAAGAAAATCATGAATATCATTTATCATAATGAGGAGAATGTGTTTATGGTGCCTAA
130 TCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
* * *
2790563 TCACAAAAAGAATAAAGATTATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAGCTTAGAC
195 TCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGAC
* *
2790628 TTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGAATTAATATCGTGTATCCTT
260 TTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTT
*
2790693 ATGTGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATCG-CAATTCTTG
325 ATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCAT-GACAATTCTTG
* *
2790757 TTTGTCTTATCTAAGAGACAAACTTTACTTCTATCAAAAATGGCGGAAAGAAAACATTTTCTTGT
389 TTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGT
* *
2790822 GACCCCAAAGCATCAATGCCATG
454 GACACCAAAGCATCAATGTCATG
* *
2790845 TATCCTAAT-ATAGGGAATGTGTTCTTAGCTCCCAATCACGAAAAGAATGGAGACTACTATC-AG
1 TATCCTAATGA-AGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTA-CGAG
* * * * * * ** *
2790908 AGTTGACGCTTTTCATAATTATGGGATGAATTCTGATTTTTGGGAAAATAAGGCAATGAAAAGAT
64 AATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAGGCAAAGAAAAGAT
* * *
2790973 TACCATGCAAAAGAAAATCGTGAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTA
129 TTCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * * * * *
2791038 ATCACAGAAAGAATGAAGATCATTAGTACAATCCTCGTTTGTATCATTTAAGGCACGAGCTTAGA
194 ATCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGA
* * * * *
2791103 CTTTACAAAAATTGGTGACAAGAAAGCATTTCTTACAAAACGAAAGAATCAATATCGTGTATCTT
259 CTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCT
* * *
2791168 TATGAGAAGACAAAGTTTATGGTGCCTAATAATGAAAAGAATGGGGATTACCATCACAATTCTTG
324 TATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTG
* *
2791233 TTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGTGGAAAGAAAACATTTTC-TGC
389 TTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGT
2791297 GACACCAAAGCATCAATGTCATG
454 GACACCAAAGCATCAATGTCATG
* * * * *
2791320 TTTCCTAAAGAAGGGAATGTGTTCTTAGC-CCCTAATCCCGAAAGGAATGGAGACTCTTACGAGA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCC-AATCTCGAAAAGAATGGAGACTATTACGAGA
* * * * * *
2791384 ATTGATGCTTGTCATATTTACGGGATGAATTTTGATA-TAATGGAAAA-CAGTGTAGAGAAAAGA
65 ATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAA-GGAAAATAAG-GCAAAGAAAAGA
* * * * *
2791447 TTTCAATGGAAAAGAAAATCATCAATA-CTGTTTATCCTAATAAGGAGAATGTGTTTATAGTGCC
128 TTTCCATGCAAAAGAAAATCATGAATATC-ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* * * * * *
2791511 TAATCACAAAAAGAATAAAGATTATTA-TAGAATCCTCATTTGTCTCAATTGAGTCACAAACTTA
192 TAATCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTA
* ** *
2791575 G-----ACAAAAATTAGTGGTAAGAAAGCCTTTCTTATGAAACCAAAGCATCAATATCGTGTATC
257 GACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATC
*
2791635 CTTATGAGAAGACAAAGTTTATGGTCCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCT
322 CTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCT
* * *
2791700 TGTTTGTCTTATTTAAGACACAAACTTTACTTCTATCAAATACGGTGGAAAGAAAACATTTTCTT
387 TGTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTT
*
2791765 GCGACACCAAAGCATCAATGTCATG
452 GTGACACCAAAGCATCAATGTCATG
* ** * * *
2791790 TATTCTTTTGAAGGGAATGTGTTCTTCGCTCCCAATCTCGAAAAGAATGGAGCCTCTTACGAGAA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTACGAGAA
* * * *
2791855 TCCAAGCTTGTCATAATTATGGGATGAATTTTGAAATTAAGGAAAAT-AGCGTAAAGAAAAGATT
66 TCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAG-GCAAAGAAAAGATT
* *
2791919 TCCATGCAAAAGAAAATCATGAATATCATTTATCATAATGAGGAGAATGTGTTTATGGTGCCTAA
130 TCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
* * * *
2791984 TCACAAAAAGAATAAAGATTATTACTAGAATCCTCGTGTGTCTCATTTGAGTCACGAACTTAGAC
195 TCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGAC
* * *
2792049 TTTACAAAAATTAGTGTCAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTT
260 TTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTT
* * *
2792114 ATGAGAAGACAAAGTTTATTGTCCCTAATCATGAAAAGAATAGGGATTAGCATGACAATTCTTGT
325 ATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTGT
* * * *
2792179 TTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAACACGGTGCAAAGAAAACATTTTCTTGCG
390 TTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTG
* *
2792244 ACACCAAAGCATCACTATCATG
455 ACACCAAAGCATCAATGTCATG
* ** * * * *
2792266 TATTCTTTTGAAGGGAATGTGTTCTTCGCTCCCAATCTCAAAAAGAATGGAGCCTCTTACGAGAA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTACGAGAA
* * * *
2792331 TCGAAGCTTGTCACAATTATGGGATGAATTTTGAAATTAAGGAAAAT-AGCGTAAAGAAAAGATT
66 TCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAG-GCAAAGAAAAGATT
* *
2792395 TCCATGCAAAAGAAAATCATGAATATCATTTATCATAATGAGGAGAATGTGTTTATGGTGCCTAA
130 TCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
* * * *
2792460 TCACAAAAGGAATCAAGATTATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAGCTTAGAC
195 TCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGAC
* * *
2792525 TTTACAAAAATTGGTGACAAGAAAGCCTTTCTTATGAAACCAAAGAATTAATATCGTGTATCCTT
260 TTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTT
*
2792590 ATGTGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATCG-CAATTCTTG
325 ATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCAT-GACAATTCTTG
* *
2792654 TTTGTCTTATCTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGC
389 TTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGT
* * * *
2792719 AACCCCAAAGCATCATTATCATG
454 GACACCAAAGCATCAATGTCATG
* ** * * * *
2792742 TATTCTTGTGAAGGGAATGTGTTCTTCGCTCCCAATCTCGAAAAGAAAGGAGCCTCTTACGAGAA
1 TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTACGAGAA
* * *
2792807 TCGAAGCTTGTCATAATTATGGGATGAATTTTGAAATTAAGGAAAAT-AGTGCAAAGAAAATATT
66 TCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAG-GCAAAGAAAAGATT
* * * * *
2792871 TCCATGCAAAAAAAAAATCGTGAATATCGTTTATCTTAATGAGGAGAATGTGCTTATAGTGCCTA
130 TCCATGC-AAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* *
2792936 ATCACAAAAAGAATAAAGATTATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGA
194 ATCACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGA
* * * ** *
2793001 CTCTACAAAATTTAGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATTGTGTATCCT
259 CTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCT
* *
2793066 TATGTGATGACAA
324 TATGAGAAGACAA
2793079 CCATGAACCA
Statistics
Matches: 35209, Mismatches: 3928, Indels: 1542
0.87 0.10 0.04
Matches are distributed among these distances:
469 174 0.00
470 1754 0.05
471 222 0.01
472 398 0.01
473 23 0.00
474 2147 0.06
475 4204 0.12
476 24497 0.70
477 718 0.02
478 24 0.00
479 3 0.00
480 7 0.00
481 3 0.00
482 9 0.00
483 6 0.00
484 4 0.00
485 4 0.00
486 1 0.00
487 1 0.00
488 2 0.00
489 9 0.00
490 5 0.00
491 6 0.00
492 3 0.00
493 254 0.01
494 177 0.01
495 2 0.00
496 8 0.00
497 5 0.00
498 4 0.00
499 3 0.00
500 10 0.00
501 16 0.00
502 14 0.00
503 20 0.00
504 23 0.00
505 22 0.00
506 5 0.00
507 10 0.00
508 12 0.00
509 7 0.00
510 20 0.00
511 8 0.00
513 5 0.00
514 4 0.00
515 7 0.00
516 5 0.00
517 3 0.00
518 2 0.00
519 2 0.00
520 1 0.00
521 1 0.00
522 18 0.00
523 16 0.00
524 19 0.00
525 12 0.00
526 15 0.00
527 20 0.00
528 19 0.00
529 6 0.00
530 7 0.00
531 11 0.00
532 8 0.00
533 20 0.00
534 8 0.00
535 10 0.00
536 3 0.00
537 4 0.00
538 4 0.00
539 9 0.00
540 10 0.00
541 7 0.00
542 10 0.00
543 7 0.00
544 9 0.00
545 15 0.00
546 17 0.00
547 14 0.00
548 14 0.00
549 14 0.00
550 7 0.00
551 2 0.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (476 bp):
TATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTATTACGAGAA
TCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAATAAGGCAAAGAAAAGATTT
CCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
CACAAAAAGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACT
TTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTA
TGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTGTT
TGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTGA
CACCAAAGCATCAATGTCATG
Found at i:2765866 original size:158 final size:158
Alignment explanation
Indices: 2765650--2765973 Score: 513
Period size: 158 Copynumber: 2.1 Consensus size: 158
2765640 AGGAGAATGT
*
2765650 GTTTATAGTGCCTAATCACAAAAAGAATAAAAATCATTACTAGAATCCTCATTTGTCTCAATTGA
1 GTTTATGGTGCCTAATCACAAAAAGAATAAAAATCATTACTAGAATCCTCATTTGTCTCAATTGA
**
2765715 GGCACGAACTTAGACTTTACAAAAATTAGTGGCAAGAAAGCCTTTCTTAGGAAACCAAAGCATCA
66 GGCACGAACTTAGACTTTACAAAAATTAGTGGCAAGAAAGCCTTTCTTACAAAACCAAAGCATCA
* ** * *
2765780 GTATCGTGTATTTTTTTGGGAAGACAAA
131 ATATCGTGTATCCTTATGAGAAGACAAA
* * *
2765808 GTTTATGGTGCCTAATCACAAAAAGAATAAAAATTATTACTAGAATCCTCGTTTGTCTCATTTGA
1 GTTTATGGTGCCTAATCACAAAAAGAATAAAAATCATTACTAGAATCCTCATTTGTCTCAATTGA
* * * *
2765873 GTCGCGAACTTAGACTTTAGAAAAATTAGTGGGAAGAAAGCCTTTCTTACAAAACCAAAGCATCA
66 GGCACGAACTTAGACTTTACAAAAATTAGTGGCAAGAAAGCCTTTCTTACAAAACCAAAGCATCA
2765938 ATATCGTGTATCCTTATGAGAAGACAAA
131 ATATCGTGTATCCTTATGAGAAGACAAA
2765966 GTTTATGG
1 GTTTATGG
2765974 CCCATAATCA
Statistics
Matches: 151, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
158 151 1.00
ACGTcount: A:0.37, C:0.16, G:0.17, T:0.30
Consensus pattern (158 bp):
GTTTATGGTGCCTAATCACAAAAAGAATAAAAATCATTACTAGAATCCTCATTTGTCTCAATTGA
GGCACGAACTTAGACTTTACAAAAATTAGTGGCAAGAAAGCCTTTCTTACAAAACCAAAGCATCA
ATATCGTGTATCCTTATGAGAAGACAAA
Found at i:2766041 original size:158 final size:158
Alignment explanation
Indices: 2765650--2766041 Score: 398
Period size: 158 Copynumber: 2.5 Consensus size: 158
2765640 AGGAGAATGT
* * * ** * * * *
2765650 GTTTATAGTGCCTAATCACAAAAAGAATAAAAATCATTACTAGAATCCTCATTTGTCTCAATTGA
1 GTTTATGGTCCCTAATCACAAAAAGAATAAAAATTAGCACTACAATCCTCGTTTGTCTCATTTAA
**
2765715 G--GCACGAACTTAGACTTTACAAAAATTAGTGGCAAGAAAGCCTTTCTTAGGAAACCAAAGCAT
66 GTAGCA--AACTTAGACTTTACAAAAATTAGTGGCAAGAAAGCCTTTCTTACAAAACCAAAGCAT
* ** * *
2765778 CAGTATCGTGTATTTTTTTGGGAAGACAAA
129 CAATATCGTGTATCCTTATGAGAAGACAAA
* ** * *
2765808 GTTTATGGTGCCTAATCACAAAAAGAATAAAAATTATTACTAGAATCCTCGTTTGTCTCATTTGA
1 GTTTATGGTCCCTAATCACAAAAAGAATAAAAATTAGCACTACAATCCTCGTTTGTCTCATTTAA
* * * *
2765873 GTCGCGAACTTAGACTTTAGAAAAATTAGTGGGAAGAAAGCCTTTCTTACAAAACCAAAGCATCA
66 GTAGCAAACTTAGACTTTACAAAAATTAGTGGCAAGAAAGCCTTTCTTACAAAACCAAAGCATCA
2765938 ATATCGTGTATCCTTATGAGAAGACAAA
131 ATATCGTGTATCCTTATGAGAAGACAAA
** **** * * *
2765966 GTTTATGG-CCCATAATCATGAAAAGAATGGGGATTAGCA-TCACAATTCTTGTTTGTCTTATTT
1 GTTTATGGTCCC-TAATCACAAAAAGAATAAAAATTAGCACT-ACAATCCTCGTTTGTCTCATTT
2766029 AAG-AGACAAACTT
64 AAGTAG-CAAACTT
2766042 TACCTCTACC
Statistics
Matches: 199, Mismatches: 30, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
157 4 0.02
158 193 0.97
160 2 0.01
ACGTcount: A:0.37, C:0.16, G:0.17, T:0.30
Consensus pattern (158 bp):
GTTTATGGTCCCTAATCACAAAAAGAATAAAAATTAGCACTACAATCCTCGTTTGTCTCATTTAA
GTAGCAAACTTAGACTTTACAAAAATTAGTGGCAAGAAAGCCTTTCTTACAAAACCAAAGCATCA
ATATCGTGTATCCTTATGAGAAGACAAA
Found at i:2787523 original size:159 final size:156
Alignment explanation
Indices: 2772528--2792744 Score: 3840
Period size: 159 Copynumber: 127.6 Consensus size: 156
2772518 AATCATTACT
* * * * **
2772528 AGAATCCTCGTTTGTCTCT-TTTGAGGCACGAACTTAGACTTTA-CAAAAATTAGTGGCAAGAAA
1 AGAATTCTTGTTTGTCT-TATTTAAGGCACGAACTT-TACTTTATC-AAAA-TAGTGTAAAGAAA
* * * * * *
2772591 GC-CTTTCTTAG-GAAACCAAAGCATCAGTATCGTGTAT-CTTTTGAGAAGACAAAGTTTATGGT
62 ACATTTTCTT-GCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGA-AATGTTTATGGT
* * **
2772653 GCCTAATCATGAAAAGAATGGGGATTAGCATG
125 CCCTAATCATGAAAAGAATGGAGATTATTATG
* * * ** *
2772685 ACAATTCTTGTTTGTCTTATTTAAGAG-ACAAACTTTACTTCTATGAAACACGGTGGAAAGAAAA
1 AGAATTCTTGTTTGTCTTATTTAAG-GCACGAACTTTACTT-TATCAAA-ATAGTGTAAAGAAAA
* * * * ** * * *
2772749 CATTTTCTTGTGACACCAACGCATTAATGCCATGTATTCTTATGATG-GGAATATGTTCT-TCG-
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGA-GAAGAA-ATGTT-TATGGT
** * *
2772811 CTCCTAATC-TCGAAAAGAATGGAGCCTCTTACG
125 C-CCTAATCAT-GAAAAGAATGGAGATTATTATG
** * * * * * * * * ** * *
2772844 AGAA-TCGAAGCTTGTCATAATTT-TGGGATGAATTTTGAAATTAAGGAAAATAGTGCAAAAAAA
1 AGAATTC-TTGTTTGTC-TTATTTAAGGCACGAACTTT--ACTTTATCAAAATAGTGTAAAGAAA
* * * * ** * * * * * * * * * *
2772907 ATATTTCCATGCAAAAGAAAATCTTGAATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTA
62 ACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAA-ATGTTTATGGTC
* ** ** *
2772972 ACTAATCACAAAAAGAATAAAGATCATTACT-
126 CCTAATCATGAAAAGAATGGAGATTATTA-TG
* * * * * *
2773003 AGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA-CAAAAATTAGTAG-CAAGAAA
1 AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTT-TACTTTATC-AAAA-TAGT-GTAAAGAAA
* * ** * *
2773066 GC-CTTTCTTATGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTC
62 ACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGA-AATGTTTATGGTC
* * **
2773130 CCTAATTATGAAAAGAATGGGGATTAGCATG
126 CCTAATCATGAAAAGAATGGAGATTATTATG
* * * * ** *
2773161 ACAATTCTTCTTTGTCTTATTTAAGAG-ACAAACTTTACTTCTATCGAACACGGTGGAAAGAAAA
1 AGAATTCTTGTTTGTCTTATTTAAG-GCACGAACTTTACTT-TATC-AAAATAGTGTAAAGAAAA
* * * * * **
2773225 CATTTTCTTGCGACACCAAAGCATCAATGTCATGTATTCTTTTGA-AGGGAATATGTTCT-T-CA
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGA-AGAA-ATGTT-TATGGT
** * *
2773287 CTCCTAATC-TCGAAAAGAATGGAGCCTCTTACG
125 C-CCTAATCAT-GAAAAGAATGGAGATTATTATG
** * * * * * * * * ** * *
2773320 AGAA-TCGAAGCTTGTCATAATTT-TGGGATGAATTTTGAAATTAAGGAAAATAGCGAAAAGAAA
1 AGAATTC-TTGTTTGTC-TTATTTAAGGCACGAACTTT--ACTTTATCAAAATAGTGTAAAGAAA
* * * * ** * * * * * * * * *
2773383 AGATTTCCAAT-CAAAAGAAAATCGTGAATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGT
62 ACATTTTC-TTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAA-ATGTTTATGGT
** * * **
2773447 GGCTAATCA-CAAAAAACATAAAGATTATTACT-
125 CCCTAATCATGAAAAGA-ATGGAGATTATTA-TG
* * * * * * ** ** *
2773479 AGAATCCTCGTTTGTCTCATTTGAGTCACGAACTTAGACTTTAGAAAAATTAGTGGCAAGAAAGC
1 AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTT-TACTTTATCAAAA-TAGTGTAAAGAAAAC
* * * * *
2773544 -CTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGAGAAAGTTTATGGTCCA
64 ATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGA-AATGTTTATGGTCCC
* * **
2773608 TAATCATGAAAAGAGTGGGGATTAGCATG
128 TAATCATGAAAAGAATGGAGATTATTATG
* * * *
2773637 ACAATTCTTGTTTGTCTTATTTAAGAG-ACAAACTTTACTTCTATCAAACACAGTGGAAAGAAAA
1 AGAATTCTTGTTTGTCTTATTTAAG-GCACGAACTTTACTT-TATCAAA-ATAGTGTAAAGAAAA
* * * * ** * * * * *
2773701 CATTTTCGTGCGACACCAACGCATTAATGGCATGTATTCTTATGA-AGGGAATGTGTTCTTCGCT
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAAATGT-TT-AT-GGT
* ** * *
2773765 CCC-AATC-TCGAAAAGAAAGGAGCCTCTTACG
125 CCCTAATCAT-GAAAAGAATGGAGATTATTATG
** * * * * * * * * ** * * *
2773796 AGAA-TCGAAGCTTGTCATAATTATGAG-ATGAATTTTCAAATTAAGGAAAATAGCGGAGAGAAA
1 AGAATTC-TTGTTTGTCTTATTTAAG-GCACGAACTTT--ACTTTATCAAAATAGTGTAAAGAAA
* * * * ** * * * * * * * * * *
2773859 ATATTTCCATGCAAAAGAAAATCGTGAATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTG
62 ACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAA-ATGTTTATGGTC
** **
2773924 CCTAATCACAAAAAGAATAAAGATTATTACT-
126 CCTAATCATGAAAAGAATGGAGATTATTA-TG
* * * * * * * *
2773955 AGAATCCTCGTTTGTCTCATTTGAGTCACGAACTTAGACTTTA-CAAAAATTAGTGTCAAGAAAG
1 AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTT-TACTTTATC-AAAA-TAGTGTAAAGAAAA
* * ** *
2774019 C-CTTCCTTGCGAAACCAAAGCATCAATATTGTGTATCCTTATGAGAAGACAAAGTTTATGGTCC
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGA-AATGTTTATGGTCC
* * **
2774083 CTAATCATGAAAAGAGTGGGGATTAGCATG
127 CTAATCATGAAAAGAATGGAGATTATTATG
* * * *
2774113 ACAATTCTTGTTTGTCTTATTTAAGAG-ACAAACTTTACTTCTATCAAACACAGTGGAAAGAAAA
1 AGAATTCTTGTTTGTCTTATTTAAG-GCACGAACTTTACTT-TATCAAA-ATAGTGTAAAGAAAA
* * * * ** * * * * **
2774177 CATTTTCGTGCGACACCAACGCATTAATGGCATGTATTCTTATGA-AGGGAATGTGTTCTTCACT
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAAATGT-TT-AT-GGT
* ** * *
2774241 CCC-AATC-TCGAAAAGAAAGGAGCCTCTTACG
125 CCCTAATCAT-GAAAAGAATGGAGATTATTATG
** * * * * * * * * ** * * *
2774272 AGAA-TCGAAGCTTGTCATAATTATGAG-ATGAATTTTGAAATTAAGGAAAATAGCGGAGAGAAA
1 AGAATTC-TTGTTTGTCTTATTTAAG-GCACGAACTTT--ACTTTATCAAAATAGTGTAAAGAAA
* * * * ** * * * * * * * * * *
2774335 ATATTTCCATGCAAAAGAAAATCGTGAATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTG
62 ACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAA-ATGTTTATGGTC
** ** *
2774400 CCTAATCAAAAAAAGAATAAAGATCATTACT-
126 CCTAATCATGAAAAGAATGGAGATTATTA-TG
* * * * * * ** *
2774431 AGAATCCTCGTTTGTATCATTTGAGGCACGAGCATAGACTTTA-CAAAA-ATTGGTGACAAGAAA
1 AGAATTCTTGTTTGTCTTATTTAAGGCACGAAC-TTTACTTTATCAAAATAGT-GT-A-AAGAAA
* * * * * * * *
2774494 GC-CTTTCTTACGAAACCAAAGAATTAATATCGTGTATCCTTATGAGAAGATAAAGTTTATGGTG
62 ACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGA-AATGTTTATGGTC
* ** *
2774558 CCTAATCATGAAAAGAATGGGGATTAGCATC
126 CCTAATCATGAAAAGAATGGAGATTATTATG
* * * * *
2774589 ACAATTCTTGTTTGTCTTATTTAAGAG-ACAAACTTTACTTCTATCAAAA-ACGGCGGAATGAAA
1 AGAATTCTTGTTTGTCTTATTTAAG-GCACGAACTTTACTT-TATCAAAATA--GTGTAAAGAAA
* ** * * * * *
2774652 ACATTTTCTTGTGACCCCAAAGCATCAATGTCATGTATCC-TACTGA-AGGGAATGTGTTCCTAG
62 ACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTA-TGAGAAGAAATGT-TT-ATGG
* * * *
2774715 -CTCTCAATC-TCGAAAAGAATTGAGACTATTATC
124 TCCCT-AATCAT-GAAAAGAATGGAGATTATTATG
* * * * * * * * * * * *
2774748 AGAA-TCGATGCTTT-TCATAATTATGGGATGAATTTTGA-TTTTTGGGAAAATAGGGCAAATAA
1 AGAATTC-TTG-TTTGTCTTATTTAAGGCACGAACTTT-ACTTTAT--CAAAATAGTGTAAAGAA
* * ** * ** * * * * * * * * * *
2774810 AAGATTTCCACGCAAAAGAAAATCGTGAATATCATTTATCATAATGAGCATAATGTGTTTATAGT
61 AACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAA-ATGTTTATGGT
* * * *
2774875 GCCTAATCA-AAGAAAGAATGAAGATCATTA-G
125 CCCTAATCATGA-AAAGAATGGAGATTATTATG
* * * * * * * *
2774906 TAGAATCCTCGTTTGTATCATTTGAGGCACGAGCTTAGACTTTA-CAAAA-ATTGGTGACAAGAA
1 -AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTT-TACTTTATCAAAATAGT-GT-A-AAGAA
* * * * * * *
2774969 AGC-CTTTCTTACGAAACCAAAGAATTAATATCGTGTATCCTTATGAGAAGATAAAGTTTATGGT
61 AACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGA-AATGTTTATGGT
* * ** *
2775033 GCCTAATCATGAAAAGAATGGGGATTAGCATC
125 CCCTAATCATGAAAAGAATGGAGATTATTATG
* * * * * *
2775065 ACAATTCTTGTTTGTCTTATTTAAGAG-ACAAACCTTACTTATATCAAAAACAGCGGAAAGAAAA
1 AGAATTCTTGTTTGTCTTATTTAAG-GCACGAACTTTACTT-TATC-AAAATAGTGTAAAGAAAA
** * * * * ** *
2775129 CATTTTCTT-CTGACCCCAAAGCATCAATGTCATGTATCCTAACGA-AGGGGATGTGCATT-TGC
63 CATTTTCTTGC-GAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAAATGT---TTATGG
* * * *
2775191 TTCCTAATC-TCAAAAAAAGTGGAGACTT-TTATA
124 TCCCTAATCATGAAAAGAA-TGGAGA-TTATTATG
** * * * ** * * *
2775224 AGAATTGATGCTTGTCATT-TTTAA-GCGAAGAATTTTGA-TATTAAGGAAAACAATGCAAAGAA
1 AGAATTCTTGTTTGTC-TTATTTAAGGC-ACGAACTTT-ACT-TT-ATCAAAATAGTGTAAAGAA
* ** ** * * *
2775286 AAGA-TTTC-AACGGAAAAGAAAGCAATCAATATCGTTTATCCTAAT--GAAGATAATGTGTTTA
61 AACATTTTCTTGC-GAAACCAAAGC-ATCAATATCATGTATCCTTATGAGAAGA-AA--TGTTTA
* * * * *
2775347 TAGTGCCTAATCA-CAAAATGAATGAAGATAATTACT-
121 TGGTCCCTAATCATGAAAA-GAATGGAGATTATTA-TG
* * * * * * ** *
2775383 AGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA-CAAAAATTGGTGGGAAGAAAG
1 AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTT-TACTTTATC-AAAA-TAGTGTAAAGAAAA
* * * * * * * *
2775447 C-CTTTCTTACAAAACCAAAGAATTAATATCGTGTATCCTGATGAGAAGATAAAGTTTATGG-CG
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGA-AATGTTTATGGTC-
** *
2775510 CCTAATCATGAAAAGAATCGG-GATTAGCATC
126 CCTAATCATGAAAAGAAT-GGAGATTATTATG
* * * * *
2775541 ACAATTCTTGTTTGTCTTATTTAAGAG-ACAAACTTTACTTCTATCAAAA-ACGGCGGAATGAAA
1 AGAATTCTTGTTTGTCTTATTTAAG-GCACGAACTTTACTT-TATCAAAATA--GTGTAAAGAAA
* ** * * * *
2775604 ACATTTTCTTGTGACCCCAAAGCATCAATGTCATGTATCC-TAGTGA-AGGGAATGTGTTCCTAG
62 ACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTA-TGAGAAGAAATGT-TT-AT-G
* * * * * *
2775667 CTCCC-AATCTTAAAAAGAATTGAGAGTATTATT
123 GTCCCTAATCATGAAAAGAATGGAGATTATTATG
* * * * * * * * * *
2775700 AGAA-TCGATGCTTT-TCATAATTATCGG-ATGAATTTTGA-TTTTTGCGAAAATAGGGCAAATA
1 AGAATTC-TTG-TTTGTCTTATTTA-AGGCACGAACTTT-ACTTTAT-C-AAAATAGTGTAAAGA
* * ** * ** * * * * * * * * * *
2775761 AAAGATTTCCACGCAAAAGAAAATCGTGAATATCATTTTTCATAATGAGGAGAATGTGTTTATAG
60 AAACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAA-ATGTTTATGG
* ** * *
2775826 TGCCTAATCACAAAAAGAATGAAGATCATTA-G
124 TCCCTAATCATGAAAAGAATGGAGATTATTATG
* ** * * * * * * * *
2775858 TAGAATCCTCATTTGTATCATTTGAGGCATGAGCTTAGACTTCA-CAAAA-ATTGGTGACAAGAA
1 -AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTT-TACTTTATCAAAATAGT-GT-A-AAGAA
* * * * * * *
2775921 AGC-CTTTCTTACGAAACCAAAGAATTAATATCGTGTATCCTTATGAGAAGATAAAGTTTATGGT
61 AACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGA-AATGTTTATGGT
* * ** *
2775985 GCCTAATCATGAAAGGAAT-GAGGATTAGCATC
125 CCCTAATCATGAAAAGAATGGA-GATTATTATG
* * * *
2776017 ACAATTCTTGTTTGTCTTATTTAAGAG-ACAAACTTTACTTCTATCAAAA-ACGGCGGAAAGAAA
1 AGAATTCTTGTTTGTCTTATTTAAG-GCACGAACTTTACTT-TATCAAAATA--GTGTAAAGAAA
* ** ** * * * * * *
2776080 ACATTTTCTTGTGACCCCAAAGCATCAATGCCATGTATCCTAAT-ATAGGGAATGTGTTCTTAGC
62 ACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAAATGT-TT-AT-GG
* * * * *
2776144 TCGC-AATCACGAAAAGAATGGAGACTACTATC
124 TCCCTAATCATGAAAAGAATGGAGATTATTATG
* ** * * * * * * * * *
2776176 AGAGTTCACGCTTT-TCATAATTATGGGATGAATTTTGA-TTTTTGGGAAAATAAG-GCAAAGAA
1 AGAATTCTTG-TTTGTCTTATTTAAGGCACGAACTTT-ACTTTAT--CAAAAT-AGTGTAAAGAA
* * * * ** * * * * * * * * *
2776238 AAGATTTCCATGCAAAAGAAAATCGTGAATATCATTTATCATAATGAGGAGAATGTGTTTATAGT
61 AACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAA-ATGTTTATGGT
* * * *
2776303 GCCTAATCA-CAGAAAGAATGAAGATCATTA-G
125 CCCTAATCATGA-AAAGAATGGAGATTATTATG
* * * * * * * *
2776334 TACAATCCTCGTTTGTATCATTTAAGGCACGAGCTTAGACTTTA-CAAAA-ATTGGTGACAAGAA
1 -AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTT-TACTTTATCAAAATAGT-GT-A-AAGAA
* * * * * * * *
2776397 AGCA-TTTCTTACAAAACGAAAGAATCAATATCTTGTATCTTTATGAGAAGACAAAGTTTATGGT
61 AACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGA-AATGTTTATGGT
* * ** *
2776461 GCCTAATCATGAAAAGAATGGGGATTACCATC
125 CCCTAATCATGAAAAGAATGGAGATTATTATG
* * *
2776493 ACAATTCTTGTTTGTCTTATTTAAGAG-ACAAACTTTACTTCTATCAAAA-ACGGTGGAAAGAAA
1 AGAATTCTTGTTTGTCTTATTTAAG-GCACGAACTTTACTT-TATCAAAATA--GTGTAAAGAAA
* * * * * * * *
2776556 ACATTTTCTTGCGACACCAAAGCATCAATGTCATGTATTCTTTTGA-AGGGAATGTGTTCTTCGC
62 ACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAAATGT-TT-AT-GG
* ** * *
2776620 TCCC-AGTC-TCGAAAAGAATGGAGCCTCTTACG
124 TCCCTAATCAT-GAAAAGAATGGAGATTATTATG
* ** * * * * * * * * * ** * *
2776652 AGAATCCAAGCTTGTCATAATTATGGGATGAATTTTGAAATTAAGGAAAATAGCGTAAAGAAAAG
1 AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTTT--ACTTTATCAAAATAGTGTAAAGAAAAC
* * * ** * * * *** * * *
2776717 ATTTCCATGCAAAAGAAAATCATGAATATCATTTATCAGAATGAGGAGAATGTGTTTATGGTGCC
64 ATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAA-ATGTTTATGGTCCC
** **
2776782 TAATCACAAAAAGAATAAAGATTATTACT-
128 TAATCATGAAAAGAATGGAGATTATTA-TG
* * * * * *
2776811 AGAATCCTCGTTTGT-TTCATTTGAGTCACGAACTTAGACTTTA-CAAAAATTAGTGTCAAGAAA
1 AGAATTCTTGTTTGTCTT-ATTTAAGGCACGAACTT-TACTTTATC-AAAA-TAGTGTAAAGAAA
* * * *
2776874 GC-CTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTC
62 ACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGA-AATGTTTATGGTC
* **
2776938 CCTAATCATGAAAAGAATGGGGATTAGCATG
126 CCTAATCATGAAAAGAATGGAGATTATTATG
* * ** *
2776969 ACAATTCTTGTTTGTCTTATTTAAGAG-ACAAACTTTACTTCTATCAAACACGGTGCAAAGAAAA
1 AGAATTCTTGTTTGTCTTATTTAAG-GCACGAACTTTACTT-TATCAAA-ATAGTGTAAAGAAAA
* * * * * * * *
2777033 CATTTTCTTGCGACACCAAAGCATCACTATCATGTATTCTTTTGA-AGGGAATGTGTTCTTCGCT
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAAATGT-TT-AT-GGT
* ** * *
2777097 CCC-AATC-TCAAAAAGAATGGAGCCTCTTACG
125 CCCTAATCAT-GAAAAGAATGGAGATTATTATG
** * ** * * * * * * * ** *
2777128 AGAA-TCGAAGCTTGTCACAATTATGGGATGAATTTTGAAATTAAGGAAAATAGCGTAAAGAAAA
1 AGAATTC-TTGTTTGTCTTATTTAAGGCACGAACTTT--ACTTTATCAAAATAGTGTAAAGAAAA
* * * * ** * * * * * * * *
2777192 GATTTCCATGCAAAAGAAAATCATGAATATCATTTATCATAATGAGGAGAATGTGTTTATGGTGC
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAA-ATGTTTATGGTCC
** **
2777257 CTAATCACAAAAAGAATAAAGATTATTACT-
127 CTAATCATGAAAAGAATGGAGATTATTA-TG
* * * * * * *
2777287 AGAATCCTCGTTTGTCTCATTTGAGGCACGAGCTTAGACTTTA-CAAAA-ATTGGTGACAAGAAA
1 AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTT-TACTTTATCAAAATAGT-GT-A-AAGAAA
* * * * * * * * *
2777350 GC-CTTTCTTACGAAACCAAAGAATTAATATCGTGTATCCTTATGTGAAGACAAAGTTTATGGTG
62 ACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGA-AATGTTTATGGTC
* **
2777414 CCTAATCATGAAAAGAATGGGGATTAGCATCG
126 CCTAATCATGAAAAGAATGGAGATTATTAT-G
* * * * * *
2777446 -CAATTCTTGTTTGTCTTATCTAAGAG-ACAAACTTTACTTCTATCAAAAATGGCGGAAAGAAAA
1 AGAATTCTTGTTTGTCTTATTTAAG-GCACGAACTTTACTT-TATC-AAAATAGTGTAAAGAAAA
* ** ** * * * * * *
2777509 CATTTTCTTGTGACCCCAAAGCATCAATGCCATGTATCCTAAT-ATAGGGAATGTGTTCTTAGCT
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAAATGT-TT-AT-GGT
* * * *
2777573 CCC-AATCACGAAAAGAATGGAGACTACTATC
125 CCCTAATCATGAAAAGAATGGAGATTATTATG
* *** * * * * * * * * *
2777604 AGAGTTGACGCTTT-TCATAATTATGGGATGAATTTTGA-TTTTTGGGAAAATAAG-GCAAAGAA
1 AGAATTCTTG-TTTGTCTTATTTAAGGCACGAACTTT-ACTTTAT--CAAAAT-AGTGTAAAGAA
* * * * ** * * * * * * * * *
2777666 AAGATTTCCATGCAAAAGAAAATCGTGAATATCATTTATCGTAATGAGGAGAATGTGTTTATAGT
61 AACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAA-ATGTTTATGGT
* * * *
2777731 GCCTAATCA-CAGAAAGAATGAAGATCATTA-G
125 CCCTAATCATGA-AAAGAATGGAGATTATTATG
* * * * * * * *
2777762 TACAATCCTCGTTTGTATCATTTAAGGCACGAGCTTAAACTTTA-CAAAA-ATTGGTGACAAGAA
1 -AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTT-TACTTTATCAAAATAGT-GT-A-AAGAA
* * * * * * * * *
2777825 AGC-CTTTCTTACAAAACCAAAGAATCAATATCGTGTATCTTTATGAGAAGACAAAGTTTTTGGT
61 AACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGA-AATGTTTATGGT
* * **
2777889 GCCTAATCATGAAAAGAATGGGGATTAGCATG
125 CCCTAATCATGAAAAGAATGGAGATTATTATG
* ** * *
2777921 AAAATTCTTGTTTGTCTTATTGGAGAG-ACAAACTTTACTTCTATCAAAA-ACGGTGGAAAGAAA
1 AGAATTCTTGTTTGTCTTATTTAAG-GCACGAACTTTACTT-TATCAAAATA--GTGTAAAGAAA
* * * * * * *
2777984 ACATTTTCTTGCGACACCAAAGCATCAATGTCATGTTTCC-TA-AAGAAGGGAATGTGTTCTTAG
62 ACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAA-GAAATGT-TT-ATGG
* ** * * * *
2778047 CCCCTAATCCCGAAAGGAATGGAGACTCTTACG
124 TCCCTAATCATGAAAAGAATGGAGATTATTATG
* * * * * * * * ** *
2778080 AGAA-TCGATGCTTGTCATATTTAAGGGATGAATTTTGAAATTAAGGAAAATAGCGTAAAGAAAA
1 AGAATTC-TTGTTTGTCTTATTTAAGGCACGAACTTT--ACTTTATCAAAATAGTGTAAAGAAAA
* * * * ** * * * * * * * *
2778144 GATTTCCATGCAAAAGAAAATCATGAATATCATTTATCATAATGAGGAGAATGTGTTTATGGTGC
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAA-ATGTTTATGGTCC
** **
2778209 CTAATCACAAAAAGAATAAAGATTATTACT-
127 CTAATCATGAAAAGAATGGAGATTATTA-TG
* * * * * * *
2778239 AGAATCCTCGTTTGTCTCATTTGAGGCACGAGCTTAGACTTTA-CAAAA-ATTGGTGACAAGAAA
1 AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTT-TACTTTATCAAAATAGT-GT-A-AAGAAA
* * ** * * * * * *
2778302 GC-CTTTCTTATGAAACCAAAGAATTAATATCGTGTATCCTTATGTGAAGACAAAGTTTATGGTG
62 ACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGA-AATGTTTATGGTC
**
2778366 CCTAATCATGAAAAGAATAGG-GATTAGCATCG
126 CCTAATCATGAAAAGAAT-GGAGATTATTAT-G
* * * * *
2778398 -CAATTCTTGTTTGTCTTATCTAAGAG-ACAAACTTTACTTCTATCAAAA-ACGGCGGAAAGAAA
1 AGAATTCTTGTTTGTCTTATTTAAG-GCACGAACTTTACTT-TATCAAAATA--GTGTAAAGAAA
* ** ** * * * * * *
2778460 ACATTTTCTTGTGACCCCAAAGCATCAATGCCATGTATCCTAAT-ATAGGGAATGTGTTCTTAGC
62 ACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAAATGT-TT-AT-GG
* * * * *
2778524 TCGC-AATCACGAAAAGAATGGAGACTACTATC
124 TCCCTAATCATGAAAAGAATGGAGATTATTATG
* ** * * * * * * * * *
2778556 AGAGTTCACGCTTT-TCATAATTATGGGATGAATTTTGA-TTTTTGGGAAAATAAG-GCAAAGAA
1 AGAATTCTTG-TTTGTCTTATTTAAGGCACGAACTTT-ACTTTAT--CAAAAT-AGTGTAAAGAA
* * * * ** * * * * * * * * *
2778618 AAGATTTCCATGCAAAAGAAAATCGTGAATATCATTTATCATAATGAGGAGAATGTGTTTATAGT
61 AACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAA-ATGTTTATGGT
* * * *
2778683 GCCTAATCA-CAGAAAGAATGAAGATCATTA-G
125 CCCTAATCATGA-AAAGAATGGAGATTATTATG
* * * * * * * *
2778714 TACAATCCTCGTTTGTATCATTTAAGGCACGAGCTTAGACTTTA-CAAAA-ATTGGTGACAAGAA
1 -AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTT-TACTTTATCAAAATAGT-GT-A-AAGAA
* * * * * * * * *
2778777 AGC-CTTTCTTACAAAACCAAAGAATCAATATCGTGTATCTTTATGAGAAGACAAAGTTTTTGGT
61 AACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGA-AATGTTTATGGT
* * **
2778841 GCCTAATCATGAAAAGAATGGGGATTAGCATG
125 CCCTAATCATGAAAAGAATGGAGATTATTATG
* * * *
2778873 ACAATTCTTGTTTGTCTTATTTAAGAG-ACAAACTTTACTTCTATCAAAAATGGTGGAAAGAAAA
1 AGAATTCTTGTTTGTCTTATTTAAG-GCACGAACTTTACTT-TATC-AAAATAGTGTAAAGAAAA
* * * * * * * * * *
2778937 CATTTTCTTGCGACACCAAAGCATCAATGTCATGTTTCCTAACGA-AGGGAATGTGTTCTTAGCC
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAAATGT-TT-ATGGTC
** * * * *
2779001 CCTAATCCCGAAAGGAATGGAGACTCTTACG
126 CCTAATCATGAAAAGAATGGAGATTATTATG
* * * * * * * * * *
2779032 AGAA-TCGATGCTTGTCATATTTAAGGGATGAATTTTGA-TATAATGGAAAACAGTGTAGAGAAA
1 AGAATTC-TTGTTTGTCTTATTTAAGGCACGAACTTT-ACT-TTAT-CAAAATAGTGTAAAGAAA
* * ** * * * * * * * * *
2779095 AGA-TTTCAATG-GAAAAGAAAATCATCAATACCGTTTATCCTAATAAGGAGAATGTGTTTATAG
62 ACATTTTC-TTGCG-AAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAA-ATGTTTATGG
* ** **
2779158 TGCCTAATCACAAAAAGAATAAAGATTATTAT-
124 TCCCTAATCATGAAAAGAATGGAGATTATTATG
* * * * * * *
2779190 AGAATCCTCGTTTGTCTCATTTGAGTCACGAAC-TTA---GA-CAAAAATTAGTGGT-AAGAAAG
1 AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTTTACTTTATC-AAAA-TAGT-GTAAAGAAAA
* * * *
2779249 C-CTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTCC
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGA-AATGTTTATGGTCC
* **
2779313 CTAATCATGAAAAGAATGGGGATTAGCATG
127 CTAATCATGAAAAGAATGGAGATTATTATG
* * * *
2779343 ACAATTCTTGTTTGTCTTATTTAAGACACAAACTTTACTTCTATC-AAATACGGTGGAAAGAAAA
1 AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTTTACTT-TATCAAAATA--GTGTAAAGAAAA
* * * * * * * *
2779407 CATTTTCTTGCGACACCAAAGCATCAATGTCATGTATTCTTTTGA-ACGGAATGTGTTCTTTGCT
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGA-AGAA-ATGTT-TATGGT
* ** * *
2779471 CCC-AATCTTGAAAAGAATGGAGCCTCTTACG
125 CCCTAATCATGAAAAGAATGGAGATTATTATG
* ** * * * * * * * * * ** * *
2779502 AGAATCCAAGCTTGTCATAATTATGGGATGAATTTTGAAATTAAGGAAAATAGCGTAAAGAAAAG
1 AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTTT--ACTTTATCAAAATAGTGTAAAGAAAAC
* * * ** * * * * * * * * *
2779567 ATTTCCATGCAAAAGAAAATCATGAATATCATTTATCATAATGAGGAGAATGTGTTTATGTTGCC
64 ATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAA-ATGTTTATGGTCCC
** **
2779632 TAATCACAAAAAGAATAAAGATTATTACT-
128 TAATCATGAAAAGAATGGAGATTATTA-TG
* * * * * * * *
2779661 AGAATCCTCGTTTGTCTCATTTGAGTCACGAACTTAGACTTTA-CAAAAATTAGTGTCAAGAAAG
1 AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTT-TACTTTATC-AAAA-TAGTGTAAAGAAAA
* * *
2779725 C-CTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTCC
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGA-AATGTTTATGGTCC
* **
2779789 CTAATCATGAAAAGAATGGGGATTAGCATG
127 CTAATCATGAAAAGAATGGAGATTATTATG
* * * * *
2779819 ACAATTCTTGTTTGTCTTATTTAAGAG-ACAAACTTTACTTCTATCAAACACAGGGCAAAGAAAA
1 AGAATTCTTGTTTGTCTTATTTAAG-GCACGAACTTTACTT-TATCAAA-ATAGTGTAAAGAAAA
* * * * * * * *
2779883 CATTTTCTTGCGACACCAAAGCATCACTATCATGTATTCTTTTGA-AGGGAATGTGTTCTTCGCT
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAAATGT-TT-AT-GGT
* ** * *
2779947 CCC-AATC-TCGAAAAGAAAGGAGCCTCTTACG
125 CCCTAATCAT-GAAAAGAATGGAGATTATTATG
** * ** * * * * * * * ** *
2779978 AGAA-TCGAAGCTTGTCACAATTATGGGATGAATTTTGAAATTAAGGAAAATAGCGTAAAGAAAA
1 AGAATTC-TTGTTTGTCTTATTTAAGGCACGAACTTT--ACTTTATCAAAATAGTGTAAAGAAAA
* * * * ** * * * * * * * *
2780042 GATTTCCATGCAAAAGAAAATCATGAATATCATTTATCATAATGAGGAGAATGTGTTTATGGTGC
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAA-ATGTTTATGGTCC
** **
2780107 CTAATCACAAAAAGAATAAAGATTATTACT-
127 CTAATCATGAAAAGAATGGAGATTATTA-TG
* * * * * * *
2780137 AGAATCCTCGTTTGTCTCATTTGAGGCACGAGCTTAGACTTTA-CAAAA-ATTGGTGACAAGAAA
1 AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTT-TACTTTATCAAAATAGT-GT-A-AAGAAA
* * * * * * * * * *
2780200 GC-CTTTCTTACGAAACCAAAGAATTAATATCGTGTATCTTTATGTGAAGACAAAGTTTATGGTG
62 ACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGA-AATGTTTATGGTC
* * **
2780264 CCTAATCATGAAATGAATGGGGATTAGCATCG
126 CCTAATCATGAAAAGAATGGAGATTATTAT-G
* * * * *
2780296 -CAATTCTTGTTTGTCTTATCTAAGAG-ACAAACTTTACTTCTATCAAAAATGGTGGAAAGAAAA
1 AGAATTCTTGTTTGTCTTATTTAAG-GCACGAACTTTACTT-TATC-AAAATAGTGTAAAGAAAA
* ** ** * * * * * *
2780359 CATTTTCTTGTGACCCCAAAGCATCAATGCCATGTATCCTAAT-ATAGGGAATGTGTTCTTAGCT
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAAATGT-TT-AT-GGT
* * * *
2780423 CCC-AATCACGAAAAGAATGGAGACTACTATC
125 CCCTAATCATGAAAAGAATGGAGATTATTATG
* ** * * * * * * * * *
2780454 AGAGTTCACGCTTT-TCATAATTATGGGATGAATTTTGA-TTTTTGGGAAAATAAG-GCAAAGAA
1 AGAATTCTTG-TTTGTCTTATTTAAGGCACGAACTTT-ACTTTAT--CAAAAT-AGTGTAAAGAA
* * * * ** * * * * * * * * *
2780516 AAGATTTCCATGCAAAAGAAAATCGTGAATATCATTTATCATAATGAGGAGAATGTGTTTATAGT
61 AACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAA-ATGTTTATGGT
* * * *
2780581 GCCTAATCA-CAGAAAGAATGAAGATCATTA-G
125 CCCTAATCATGA-AAAGAATGGAGATTATTATG
* * * * * * * *
2780612 TACAATCCTCGTTTGTATCATTTAAGGCACGAGCTTAAACTTTA-CAAAA-ATTGGTGACAAGAA
1 -AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTT-TACTTTATCAAAATAGT-GT-A-AAGAA
* * * * * * * * *
2780675 AGC-CTTTCTTACAAAACCAAAGAATCAATATCGTGTATCTTTATGAGAAGACAAAGTTTTTGGT
61 AACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGA-AATGTTTATGGT
* * **
2780739 GCCTAATCATGAAAAGAATGGGGATTAGCATG
125 CCCTAATCATGAAAAGAATGGAGATTATTATG
* ** * *
2780771 AAAATTCTTGTTTGTCTTATTGGAGAG-ACAAACTTTACTTCTATCAAAA-ACGGTGGAAAGAAA
1 AGAATTCTTGTTTGTCTTATTTAAG-GCACGAACTTTACTT-TATCAAAATA--GTGTAAAGAAA
* * * * * * *
2780834 ACATTTTCTTGCGACACCAAAGCATCAATGTCATGTTTCC-TA-AAGAAGGGAATGTGTTCTTAG
62 ACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAA-GAAATGT-TT-ATGG
* * * * * *
2780897 CCCCTAATCCCT-AAAGGAATGGAGACTCTTACG
124 TCCCTAAT-CATGAAAAGAATGGAGATTATTATG
* * * * * * * * ** *
2780930 AGAA-TCGATGCTTGTCATATTTAAGGGATGAATTTTGAAATTAAGGAAAATAGCGTAAAGAAAA
1 AGAATTC-TTGTTTGTCTTATTTAAGGCACGAACTTT--ACTTTATCAAAATAGTGTAAAGAAAA
* * * * ** * * * * * * * *
2780994 GATTTCCATGCAAAAGAAAATCATGAATATCATTTATCATAATGAGGAGAATGTGTTTATGGTGC
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAA-ATGTTTATGGTCC
** **
2781059 CTAATCACAAAAAGAATAAAGATTATTACT-
127 CTAATCATGAAAAGAATGGAGATTATTA-TG
* * * * * * *
2781089 AGAATCCTCGTTTGTCTCATTTGAGGCACGAGCTTAGACTTTA-CAAAA-ATTGGTGACAAGAAA
1 AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTT-TACTTTATCAAAATAGT-GT-A-AAGAAA
* * * * * * * * * *
2781152 GC-CTTTCTTACAAAACCAAAGAATTAATATCGTGTATCCTTATGTGAAGACAAAGTTTATGGTG
62 ACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGA-AATGTTTATGGTC
* **
2781216 CCTAATCATGAAAAGAATGGGGATTAGCATCG
126 CCTAATCATGAAAAGAATGGAGATTATTAT-G
* * * * *
2781248 -CAATTCTTGTTTGTCTTATCTAAGAG-ACAAACTTTACTTCTATCAAAA-ACGGCGGAAAGAAA
1 AGAATTCTTGTTTGTCTTATTTAAG-GCACGAACTTTACTT-TATCAAAATA--GTGTAAAGAAA
* ** ** * * * * * *
2781310 ACATTTTCTTGTGACCCCAAAGCATCAATGCCATGTATCCTAAT-ATAGGGAATGTGTTCTTAGC
62 ACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAAATGT-TT-AT-GG
* * * *
2781374 TCCC-AATCACGAAAAGAATGGAGACTACTATC
124 TCCCTAATCATGAAAAGAATGGAGATTATTATG
* *** * * * * * * * * *
2781406 AGAGTTGACGCTTT-TCATAATTATGGGATGAATTTTGA-TTTTTGGGAAAATAAG-GCAAAGAA
1 AGAATTCTTG-TTTGTCTTATTTAAGGCACGAACTTT-ACTTTAT--CAAAAT-AGTGTAAAGAA
* * * * ** * * * * * * * * *
2781468 AAGATTTCCATGCAAAAGAAAATCGTGAATATCATTTATCATAATGAGGAGAATGTGTTTATAGT
61 AACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAA-ATGTTTATGGT
* * * *
2781533 GCCTAATCA-CAGAAAGAATGAAGATCATTA-G
125 CCCTAATCATGA-AAAGAATGGAGATTATTATG
* * * * * * * *
2781564 TACAATCCTCGTTTGTATCATTTAAGGCACGAGCTTAGACTTTA-CAAAA-ATTGGTGACAAGAA
1 -AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTT-TACTTTATCAAAATAGT-GT-A-AAGAA
* * * * * * * * *
2781627 AGC-CTTTCTTACAAAACCAAAGAATCAATATCGTGTATCTTTATGAGAAGACAAAGTTTTTGGT
61 AACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGA-AATGTTTATGGT
* * **
2781691 GCCTAATCATGAAAAGAATGGGGATTAGCATG
125 CCCTAATCATGAAAAGAATGGAGATTATTATG
* ** * ** *
2781723 AAAATTCTTGTTTGTCTTATTGGAGAG-ACAAACTTTACTTCTATCAAGAACGGTGGAAAGAAAA
1 AGAATTCTTGTTTGTCTTATTTAAG-GCACGAACTTTACTT-TATCAA-AATAGTGTAAAGAAAA
* * * * * * * *
2781787 CATTTTCTTGCGACACCAAAGCATCAATGTCATGTTTCC-TA-AAGAAGGGAATGTGTTCTTAGC
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAA-GAAATGT-TT-ATGGT
** * * * *
2781850 CCCTAATCCCGAAAGGAATGGAGACTCTTACG
125 CCCTAATCATGAAAAGAATGGAGATTATTATG
* * * * * * * * ** *
2781882 AGAA-TCGATGCTTGTCATATTTAAGGGATGAATTTTGAAATTAAGGAAAATAGCGTAAAGAAAA
1 AGAATTC-TTGTTTGTCTTATTTAAGGCACGAACTTT--ACTTTATCAAAATAGTGTAAAGAAAA
* * * * ** * * * * * * * *
2781946 GATTTCCATGCAAAAGAAAATCATGAATATCATTTATCATAATGAGGAGAATGTGTTTATGGTGC
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAA-ATGTTTATGGTCC
** **
2782011 CTAATCACAAAAAGAATAAAGATTATTACT-
127 CTAATCATGAAAAGAATGGAGATTATTA-TG
* * * * * * *
2782041 AGAATCCTCGTTTGTCTCATTTGAGGCACGAGCTTAGACTTTA-CAAAA-ATTGGTGACAAGAAA
1 AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTT-TACTTTATCAAAATAGT-GT-A-AAGAAA
* * * * * * * * *
2782104 GC-CTTTCTTACGAAACCAAAGAATTAATATCGTGTATCCTTATGTGAAGACAAAGTTTATGGTG
62 ACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGA-AATGTTTATGGTC
* **
2782168 CCTAATCATGAAAAGAATGGGGATTAGCATCG
126 CCTAATCATGAAAAGAATGGAGATTATTAT-G
* * * * * *
2782200 -TAATTCTTGTTTGTCTTATCTAAGAG-ACAAACTTTACTTCTATCAAAAATGGCGGAAAGAAAA
1 AGAATTCTTGTTTGTCTTATTTAAG-GCACGAACTTTACTT-TATC-AAAATAGTGTAAAGAAAA
* ** ** * * * * * *
2782263 CATTTTCTTGTGAGCCCAAAGCATCAATGCCATGTATCCTAAT-ATAGGGAATGTGTTCTTAGCT
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAAATGT-TT-AT-GGT
* * * *
2782327 CCC-AATCACGAAAAGAATGGAGACTACTATC
125 CCCTAATCATGAAAAGAATGGAGATTATTATG
* *** * * * * * * * * *
2782358 AGAGTTGACGCTTT-TCATAATTATGGGATGAATTTTGA-TTTTTGGGAAAATAAG-GCAAAGAA
1 AGAATTCTTG-TTTGTCTTATTTAAGGCACGAACTTT-ACTTTAT--CAAAAT-AGTGTAAAGAA
* * * * ** *** * * * * * * *
2782420 AAGATTTCCATGCAAAAGAAAATTGTGAATATCATTTATCATAATGAGGAGAATGTGTTTATAGT
61 AACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAA-ATGTTTATGGT
* * * *
2782485 GCCTAATCA-CAGAAAGAATGAAGATCATTA-G
125 CCCTAATCATGA-AAAGAATGGAGATTATTATG
* * * * * * * *
2782516 TACAATCCTCGTTTGTATCATTTAAGGCACGAGCTTAGACTTTA-CAAAA-ATTGGTGACAAGAA
1 -AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTT-TACTTTATCAAAATAGT-GT-A-AAGAA
* * * * * * * * *
2782579 AGC-CTTTCTTACAAAACCAAAGAATCAATATCGTGTATCTTTATGAGAAGACAAAGTTTTTGGT
61 AACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGA-AATGTTTATGGT
* * **
2782643 GCCTAATCATGAAAAGAATGGGGATTAGCATG
125 CCCTAATCATGAAAAGAATGGAGATTATTATG
* ** * ** *
2782675 AAAATTCTTGTTTGTCTTATTGGAGAG-ACAAACTTTACTTCTATCAAGAACGGTGGAAAGAAAA
1 AGAATTCTTGTTTGTCTTATTTAAG-GCACGAACTTTACTT-TATCAA-AATAGTGTAAAGAAAA
* * * * * * * *
2782739 CATTTTCTTGCGACACCAAAGCATCAATGTCATGTTTCC-TA-AAGAAGGGAATGTGTTCTTAGC
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAA-GAAATGT-TT-ATGGT
** * * * *
2782802 CCCTAATCCCGAAAGGAATGGAGACTCTTACG
125 CCCTAATCATGAAAAGAATGGAGATTATTATG
* * * * * * * * ** *
2782834 AGAA-TCGATGCTTGTCATATTTAAGGGATGAATTTTGAAATTAAGGAAAATAGCGTAAAGAAAA
1 AGAATTC-TTGTTTGTCTTATTTAAGGCACGAACTTT--ACTTTATCAAAATAGTGTAAAGAAAA
* * * * ** * * * * * * * *
2782898 GATTTCCATGCAAAAGAAAATCATGAATATCATTTATCATAATGAGGAGAATGTGTTTATGGTGC
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAA-ATGTTTATGGTCC
** **
2782963 CTAATCACAAAAAGAATAAAGATTATTACT-
127 CTAATCATGAAAAGAATGGAGATTATTA-TG
* * * * * * *
2782993 AGAATCCTCGTTTGTCTCATTTGAGGCACGAGCTTAGACTTTA-CAAAA-ATTGGTGACAAGAAA
1 AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTT-TACTTTATCAAAATAGT-GT-A-AAGAAA
* * * * * * * * * *
2783056 GC-CTTTCTTACAAAACCAAAGAATTAATATCGTGTATCCTTATGTGAAGACAAAGTTTATGGTG
62 ACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGA-AATGTTTATGGTC
* **
2783120 CCTAATCATGAAAAGAATGGGGATTAGCATCG
126 CCTAATCATGAAAAGAATGGAGATTATTAT-G
* * * * * *
2783152 -CAATTCTTGTTTGTCTTATCTAAGAG-ACAAACTTTACTTCTATCAAAAATGGCGGAAAGAAAA
1 AGAATTCTTGTTTGTCTTATTTAAG-GCACGAACTTTACTT-TATC-AAAATAGTGTAAAGAAAA
* ** ** * * * * * *
2783215 CATTTTCTTGTGAGCCCAAAGCATCAATGCCATGTATCCTAAT-ATAGGGAATGTGTTCTTAGCT
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAAATGT-TT-AT-GGT
* * * *
2783279 CCC-AATCACGAAAAGAATGGAGACTACTATC
125 CCCTAATCATGAAAAGAATGGAGATTATTATG
* *** * * * * * * * * *
2783310 AGAGTTGACGCTTT-TCATAATTATGGGATGAATTTTGA-TTTTTGGGAAAATAAG-GCAAAGAA
1 AGAATTCTTG-TTTGTCTTATTTAAGGCACGAACTTT-ACTTTAT--CAAAAT-AGTGTAAAGAA
* * * * ** * * * * * * * * *
2783372 AAGATTTCCATGCAAAAGAAAATCGTGAATATCATTTATCATAATGAGGAGAATGTGTTTATAGT
61 AACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAA-ATGTTTATGGT
* * * *
2783437 GCCTAATCA-CAGAAAGAATGAAGATCATTA-G
125 CCCTAATCATGA-AAAGAATGGAGATTATTATG
* * * * * * * *
2783468 TACAATCCTCGTTTGTATCATTTAAGGCACGAGCTTAGACTTTA-CAAAA-ATTGGTGACAAGAA
1 -AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTT-TACTTTATCAAAATAGT-GT-A-AAGAA
* * * * * * * * *
2783531 AGC-CTTTCTTACAAAACCAAAGAATCAATATCGTGTATCTTTATGAGAAGACAAAGTTTTTGGT
61 AACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGA-AATGTTTATGGT
* * **
2783595 GCCTAATCATGAAAAGAATGGGGATTAGCATG
125 CCCTAATCATGAAAAGAATGGAGATTATTATG
* ** * ** *
2783627 AAAATTCTTGTTTGTCTTATTGGAGAG-ACAAACTTTACTTCTATCAAGAACGGTGGAAAGAAAA
1 AGAATTCTTGTTTGTCTTATTTAAG-GCACGAACTTTACTT-TATCAA-AATAGTGTAAAGAAAA
* * * * * * * *
2783691 CATTTTCTTGCGACACCAAAGCATCAATGTCATGTTTCC-TA-AAGAAGGGAATGTGTTCTTAGC
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAA-GAAATGT-TT-ATGGT
** * * * *
2783754 CCCTAATCCCGAAAGGAATGGAGACTCTTACG
125 CCCTAATCATGAAAAGAATGGAGATTATTATG
* * * * * * * * ** *
2783786 AGAA-TCGATGCTTGTCATATTTAAGGGATGAATTTTGAAATTAAGGAAAATAGCGTAAAGAAAA
1 AGAATTC-TTGTTTGTCTTATTTAAGGCACGAACTTT--ACTTTATCAAAATAGTGTAAAGAAAA
* * * * ** * * * * * * * *
2783850 GATTTCCATGCAAAAGAAAATCATGAATATCATTTATCATAATGAGGAGAATGTGTTTATGGTGC
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAA-ATGTTTATGGTCC
** **
2783915 CTAATCACAAAAAGAATAAAGATTATTACT-
127 CTAATCATGAAAAGAATGGAGATTATTA-TG
* * * * * * *
2783945 AGAATCCTCGTTTGTCTCATTTGAGGCACGAGCTTAGACTTTA-CAAAA-ATTGGTGACAAGAAA
1 AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTT-TACTTTATCAAAATAGT-GT-A-AAGAAA
* * * * * * * * *
2784008 GC-CTTTCTTACGAAACCAAAGAATTAATATCGTGTATCCTTATGTGAAGACAAAGTTTATGGTG
62 ACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGA-AATGTTTATGGTC
* **
2784072 CCTAATCATGAAAAGAATGGGGATTAGCATCG
126 CCTAATCATGAAAAGAATGGAGATTATTAT-G
* * * * * *
2784104 -TAATTCTTGTTTGTCTTATCTAAGAG-ACAAACTTTACTTCTATCAAAAATGGCGGAAAGAAAA
1 AGAATTCTTGTTTGTCTTATTTAAG-GCACGAACTTTACTT-TATC-AAAATAGTGTAAAGAAAA
* ** ** * * * * * *
2784167 CATTTTCTTGTGAGCCCAAAGCATCAATGCCATGTATCCTAAT-ATAGGGAATGTGTTCTTAGCT
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAAATGT-TT-AT-GGT
* * * *
2784231 CCC-AATCACGAAAAGAATGGAGACTACTATC
125 CCCTAATCATGAAAAGAATGGAGATTATTATG
* *** * * * * * * * * *
2784262 AGAGTTGACGCTTT-TCATAATTATGGGATGAATTTTGA-TTTTTGGGAAAATAAG-GCAAAGAA
1 AGAATTCTTG-TTTGTCTTATTTAAGGCACGAACTTT-ACTTTAT--CAAAAT-AGTGTAAAGAA
* * * * ** * * * * * * * * *
2784324 AAGATTTCCATGCAAAAGAAAATCGTGAATATCATTTATCATAATGAGGAGAATGTGTTTATAGT
61 AACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAA-ATGTTTATGGT
* * * *
2784389 GCCTAATCA-CAGAAAGAATGAAGATCATTA-G
125 CCCTAATCATGA-AAAGAATGGAGATTATTATG
* * * * * * * *
2784420 TACAATCCTCGTTTGTATCATTTAAGGCACGAGCTTAGACTTTA-CAAAA-ATTGGTGACAAGAA
1 -AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTT-TACTTTATCAAAATAGT-GT-A-AAGAA
* * * * * * * * *
2784483 AGC-CTTTCTTACAAAACCAAAGAATCAATATCGTGTATCTTTATGAGAAGACAAAGTTTTTGGT
61 AACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGA-AATGTTTATGGT
* * **
2784547 GCCTAATCATGAAAAGAATGGGGATTAGCATG
125 CCCTAATCATGAAAAGAATGGAGATTATTATG
* ** * ** *
2784579 AAAATTCTTGTTTGTCTTATTGGAGAG-ACAAACTTTACTTCTATCAAGAACGGTGGAAAGAAAA
1 AGAATTCTTGTTTGTCTTATTTAAG-GCACGAACTTTACTT-TATCAA-AATAGTGTAAAGAAAA
* * * * * * * *
2784643 CATTTTCTTGCGACACCAAAGCATCAATGTCATGTTTCC-TA-AAGAAGGGAATGTGTTCTTAGC
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAA-GAAATGT-TT-ATGGT
** * * * *
2784706 CCCTAATCCCGAAAGGAATGGAGACTCTTACG
125 CCCTAATCATGAAAAGAATGGAGATTATTATG
* * * * * * * * ** *
2784738 AGAA-TCGATGCTTGTCATATTTAAGGGATGAATTTTGAAATTAAGGAAAATAGCGTAAAGAAAA
1 AGAATTC-TTGTTTGTCTTATTTAAGGCACGAACTTT--ACTTTATCAAAATAGTGTAAAGAAAA
* * * * ** * * * * * * * *
2784802 GATTTCCATGCAAAAGAAAATCATGAATATCATTTATCATAATGAGGAGAATGTGTTTATGGTGC
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAA-ATGTTTATGGTCC
** **
2784867 CTAATCACAAAAAGAATAAAGATTATTACT-
127 CTAATCATGAAAAGAATGGAGATTATTA-TG
* * * * * * * *
2784897 AGAATCCTCGTTTGTCTCAATTGAGGCACGAGCTTAGACTTTA-CAAAA-ATTGGTGACAAGAAA
1 AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTT-TACTTTATCAAAATAGT-GT-A-AAGAAA
* * * * * * *
2784960 GGC--TTTCTTACGAAACCAAAGAATTAATATCGTGTATCCTTATGTGAAGACAAAGTTTATGGT
62 -ACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGA-AATGTTTATGGT
* * **
2785023 GCCTAATCATGAAAAGAATGGGGATTAGCATCG
125 CCCTAATCATGAAAAGAATGGAGATTATTAT-G
* * * * *
2785056 -CAATTCTTGTTTGTCTTATCTAAGAG-ACAAACTTTACTTCTATCAAAA-ACGGCGGAAAGAAA
1 AGAATTCTTGTTTGTCTTATTTAAG-GCACGAACTTTACTT-TATCAAAATA--GTGTAAAGAAA
* ** ** * * * * * *
2785118 ACATTTTCTTGTGACCCCAAAGCATCAATGCCATGTATCCTAAT-ATAGGGAATGTGTTCTTAGC
62 ACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAAATGT-TT-AT-GG
* ** *
2785182 TCCC-AATCACT-AAAAGAATGGAGACTACGATC
124 TCCCTAATCA-TGAAAAGAATGGAGATTATTATG
* *** * * * * * * * ** *
2785214 AGAGTTGACGCTTT-TCATAATTATGGGATGAATTTTGATTTTTAGGAAAATAAG-GCAAAGAAA
1 AGAATTCTTG-TTTGTCTTATTTAAGGCACGAACTTT-A-CTTTATCAAAAT-AGTGTAAAGAAA
* * * * ** * * * * * * * * * *
2785277 AGATTTCCATGCAAAAGAAAATCGTGAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTG
62 ACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAA-ATGTTTATGGTC
* * *
2785342 CCTAATCA-CAGAAAGAATGAAGATCATTA-G
126 CCTAATCATGA-AAAGAATGGAGATTATTATG
* * * * * * * * *
2785372 TACAATCCTCGTTTGTATCATTTGAGTCACGAACTTAGACTTTA-CAAAAATTAGTGTCAAGAAA
1 -AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTT-TACTTTATC-AAAA-TAGTGTAAAGAAA
* * * * * *
2785436 GC-CTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCTTTATGAGAAGACAAAGTTTATGGTG
62 ACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGA-AATGTTTATGGTC
* **
2785500 CCTAATCATGAAAAGAATGGGGATTAGCATG
126 CCTAATCATGAAAAGAATGGAGATTATTATG
* * * *
2785531 ACAATTCTTGTTTGTCTTATTTAAGAG-ACAAACTTTACTTCTATCAAAAATGGTGGAAAGAAAA
1 AGAATTCTTGTTTGTCTTATTTAAG-GCACGAACTTTACTT-TATC-AAAATAGTGTAAAGAAAA
* * * * * * * * * *
2785595 CATTTTCTTGCGACACCAAAGCATCAATGTCATGTTTCCTAACGA-AGGGAATGTGTTCTTAGCC
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAAATGT-TT-ATGGTC
** * * * *
2785659 CCTAATCCCGAAAGGAATGGAGACTCTTACG
126 CCTAATCATGAAAAGAATGGAGATTATTATG
* * * * * * * * * *
2785690 AGAA-TCGATGCTTGTCATATTTAAGGGATGAATTTTGA-TATAATGGAAAACAGTGTAGAGAAA
1 AGAATTC-TTGTTTGTCTTATTTAAGGCACGAACTTT-ACT-TTAT-CAAAATAGTGTAAAGAAA
* * ** * * * * * * * * *
2785753 AGA-TTTCAATG-GAAAAGAAAATCATCAATACCGTTTATCCTAATAAGGAGAATGTGTTTATAG
62 ACATTTTC-TTGCG-AAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAA-ATGTTTATGG
* ** **
2785816 TGCCTAATCACAAAAAGAATAAAGATTATTAT-
124 TCCCTAATCATGAAAAGAATGGAGATTATTATG
* * * * * * *
2785848 AGAATCCTCGTTTGTCTCATTTGAGTCACGAAC-TTA---GA-CAAAAATTAGTGGT-AAGAAAG
1 AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTTTACTTTATC-AAAA-TAGT-GTAAAGAAAA
* * * *
2785907 C-CTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTCC
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGA-AATGTTTATGGTCC
* * **
2785971 CTAATCACGAAAAGAATGGGGATTAGCATG
127 CTAATCATGAAAAGAATGGAGATTATTATG
* * * *
2786001 ACAATTCTTGTTTGTCTTATTTAAGACACAAACTTTACTTCTATC-AAATACGGTGGAAAGAAAA
1 AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTTTACTT-TATCAAAATA--GTGTAAAGAAAA
* * * * * * * * *
2786065 CATTTTCTTGTGACACCAAAGCATCAATGTCATGTATTCTTTTGA-AGGGAATGTGTTCTTCGCT
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAAATGT-TT-AT-GGT
* * ** * *
2786129 CCC-AATC-TCGAAAAAAAAGGAGCCTCTTACG
125 CCCTAATCAT-GAAAAGAATGGAGATTATTATG
** * ** * * * * * * * ** *
2786160 AGAA-TCGAAGCTTGTCACAATTATGGGATGAATTTTGAAATTAAGGAAAATAGCGTAAAGAAAA
1 AGAATTC-TTGTTTGTCTTATTTAAGGCACGAACTTT--ACTTTATCAAAATAGTGTAAAGAAAA
* * * * ** * * * * * * * *
2786224 GATTTCCATGCAAAAGAAAATCATGAATATCATTTATCATAATGAGGAGAATGTGTTTATGGTGC
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAA-ATGTTTATGGTCC
** **
2786289 CTAATCACAAAAAGAATAAAGATTATTACT-
127 CTAATCATGAAAAGAATGGAGATTATTA-TG
* * * * * * * *
2786319 AGAATCCTCGTTTGTCTCATTTGAGGCACGAGCTTAGACTTTA-CAAAAATTAGTGTCAAGAAAG
1 AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTT-TACTTTATC-AAAA-TAGTGTAAAGAAAA
* * *
2786383 C-CTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTCC
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGA-AATGTTTATGGTCC
* **
2786447 CTAATCATGAAAAGAATGGGGATTAGCATG
127 CTAATCATGAAAAGAATGGAGATTATTATG
* * * * *
2786477 ACAATTCTTGTTTGTCTCATTTAAGACACAAACTTTACTTCTATC-AAATACGGTGGAAAGAAAA
1 AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTTTACTT-TATCAAAATA--GTGTAAAGAAAA
* * * * * *
2786541 CATTTTCTTGCGACACCAAAGCATCAATGTCATGTATTCTTTTGA-ACA-AAATGTGTTCTTCGC
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGA-AGAAATGT-TT-AT-GG
* ** * *
2786604 TCCC-AATCTTGAAAAGAATGGAGCCTCTTACG
124 TCCCTAATCATGAAAAGAATGGAGATTATTATG
* ** * * * * * * * * * ** * *
2786636 AGAATCCAAGCTTGTCATAATTATGGGATGAATTTTGAAATTAAGGAAAATAGCGTAAAGAAAAG
1 AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTTT--ACTTTATCAAAATAGTGTAAAGAAAAC
* * * ** * * * * * * * * *
2786701 ATTTCCATGCAAAAGAAAATCATGAATATCATTTATCATAATGAGGAGAATGTGTTTATGTTGCC
64 ATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAA-ATGTTTATGGTCCC
** **
2786766 TAATCACAAAAAGAATAAAGATTATTACT-
128 TAATCATGAAAAGAATGGAGATTATTA-TG
* * * * * * * *
2786795 AGAATCCTCGTTTGTCTCATTTGAGTCACGAACTTAGACTTTA-CAAAAATTAGTGTCAAGAAAG
1 AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTT-TACTTTATC-AAAA-TAGTGTAAAGAAAA
* * * * *
2786859 C-CTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCTTTATGAGAAGACAAAGTTTATGGTGC
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGA-AATGTTTATGGTCC
* **
2786923 CTAATCATGAAAAGAATGGGGATTAGCATG
127 CTAATCATGAAAAGAATGGAGATTATTATG
* * * *
2786953 ACAATTCTTGTTTGTCTTATTTAAGAG-ACAAACTTTACTTCTATCAAAAATGGTGGAAAGAAAA
1 AGAATTCTTGTTTGTCTTATTTAAG-GCACGAACTTTACTT-TATC-AAAATAGTGTAAAGAAAA
* * * * * * * * * *
2787017 CATTTTCTTGCGACACCAAAGCATCAATGTCATGTTTCCTAACGA-AGGGAATGTGTTCTTAGCC
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAAATGT-TT-ATGGTC
** * * * *
2787081 CCTAATCCCGAAAGGAATGGAGACTCTTACG
126 CCTAATCATGAAAAGAATGGAGATTATTATG
* * * * * * * * * *
2787112 AGAA-TCGATGCTTGTCATATTTAAGGGATGAATTTTGA-TATAATGGAAAACAGTGTAGAGAAA
1 AGAATTC-TTGTTTGTCTTATTTAAGGCACGAACTTT-ACT-TTAT-CAAAATAGTGTAAAGAAA
* * ** * * * * * * * * *
2787175 AGA-TTTCAATG-GAAAAGAAAATCATCAATACCGTTTATCCTAATAAGGAGAATGTGTTTATAG
62 ACATTTTC-TTGCG-AAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAA-ATGTTTATGG
* ** **
2787238 TGCCTAATCACAAAAAGAATAAAGATTATTAT-
124 TCCCTAATCATGAAAAGAATGGAGATTATTATG
* * * * * * *
2787270 AGAATCCTCGTTTGTCTCATTTGAGTCACGAAC-TTA---GA-CAAAAATTAGTGGT-AAGAAAG
1 AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTTTACTTTATC-AAAA-TAGT-GTAAAGAAAA
* * *
2787329 C-CTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTCC
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGA-AATGTTTATGGTCC
* **
2787393 CTAATCATGAAAAGAATGGGGATTAGCATG
127 CTAATCATGAAAAGAATGGAGATTATTATG
* * * * *
2787423 ACAATTCTTGTTTGTCTTATTTAAGACACAAACTTTACTTCTATCAAATACAGTGGAAAGAAAAC
1 AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTTTACTT-TATCAAA-ATAGTGTAAAGAAAAC
* * * * * * * *
2787488 ATTTTCTTGCGACACCAAAGCATCAATGTCATGTATTCTTTTGA-AGGGAATGTGTTCTTCGCTC
64 ATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAAATGT-TT-AT-GGTC
** * *
2787552 CC-AATC-TCGAAAAGAATGGAGCCTCTTACG
126 CCTAATCAT-GAAAAGAATGGAGATTATTATG
* * * * * * * * ** ** *
2787582 AGAA-TCTAAGCTTGTCATAATTATGGGATGAATTTTGAAATTAGGGAAAATAGCGTAAAGAAAA
1 AGAATTCT-TGTTTGTCTTATTTAAGGCACGAACTTT-ACTTTA-TCAAAATAGTGTAAAGAAAA
* * * * ** * * * * * * * *
2787646 GATTTCCATGCAAAAGAAAATCATGAATATCATTTATCATAATGAGGAGAATGTGTTTATGGTGC
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAA-ATGTTTATGGTCC
** **
2787711 CTAATCACAAAAAGAATAAAGATTATTACT-
127 CTAATCATGAAAAGAATGGAGATTATTA-TG
* * * * * * * *
2787741 AGAATCCTCGTTTGTCTCATTTGAGTCACGAACTTAGACTTTA-CAAAAATTAGTGTCAAGAAAG
1 AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTT-TACTTTATC-AAAA-TAGTGTAAAGAAAA
* * * *
2787805 C-CTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTCC
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGA-AATGTTTATGGTCC
* **
2787869 CTAATCATGAAAAGAATGGGGATTAGCATG
127 CTAATCATGAAAAGAATGGAGATTATTATG
* * ** *
2787899 ACAATTCTTGTTTGTCTTATTTAA-G-ACAAACTTTACTTCTATCAAACACGGTGCAAAGAAAAC
1 AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTTTACTT-TATCAAA-ATAGTGTAAAGAAAAC
* * * * * * * *
2787962 ATTTTCTTGCGACACCAAAGCATCACTATCATGTATTCTTTTGA-AGGGAATGTGTTCTTCGCTC
64 ATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAAATGT-TT-AT-GGTC
* * ** * *
2788026 CC-AATC-TCGAAAAAAAAGGAGCCTCTTACG
126 CCTAATCAT-GAAAAGAATGGAGATTATTATG
** * ** * * * * * * * ** *
2788056 AGAA-TCGAAGCTTGTCACAATTATGGGATGAATTTTGAAATTAAGGAAAATAGCGTAAAGAAAA
1 AGAATTC-TTGTTTGTCTTATTTAAGGCACGAACTTT--ACTTTATCAAAATAGTGTAAAGAAAA
* * * * ** * * * * * * * * *
2788120 GATTTCCATGCAAAAGAAAATCATGAATATCATTTATCATAATGAGGAGAATGTGTTTATGTTGC
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAA-ATGTTTATGGTCC
** **
2788185 CTAATCACAAAAAGAATAAAGATTATTACT-
127 CTAATCATGAAAAGAATGGAGATTATTA-TG
* * * * * * * *
2788215 AGAATCCTCGTTTGTCTCATTTGAGTCACGAACTTAGACTTTA-CAAAAATTAGTGTCAAGAAAG
1 AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTT-TACTTTATC-AAAA-TAGTGTAAAGAAAA
* * *
2788279 C-CTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTCC
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGA-AATGTTTATGGTCC
* **
2788343 CTAATCATGAAAAGAATGGGGATTAGCATG
127 CTAATCATGAAAAGAATGGAGATTATTATG
* * ** *
2788373 ACAATTCTTGTTTGTCTTATTTAAGAG-ACAAACTTTACTTCTATCAAACACGGTGCAAAGAAAA
1 AGAATTCTTGTTTGTCTTATTTAAG-GCACGAACTTTACTT-TATCAAA-ATAGTGTAAAGAAAA
* * * * * * * * *
2788437 CATTTTCTTGTGACACCAAAGCATCACTATCATGTATTCTTTTGA-AGGGAATGTGTTCTTCGCT
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAAATGT-TT-AT-GGT
* ** * *
2788501 CCC-AATC-TCGAAAAGAAAGGAGCCTCTTACG
125 CCCTAATCAT-GAAAAGAATGGAGATTATTATG
** * ** * * * * * * * ** *
2788532 AGAA-TCGAAGCTTGTCACAATTATGGGATGAATTTTGAAATTAAGGAAAATAGCGTAAAGAAAA
1 AGAATTC-TTGTTTGTCTTATTTAAGGCACGAACTTT--ACTTTATCAAAATAGTGTAAAGAAAA
* * * * ** * * * * * * * *
2788596 GATTTCCATGCAAAAGAAAATCATGAATATCATTTATCATAATGAGGAGAATGTGTTTATGGTGC
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAA-ATGTTTATGGTCC
** **
2788661 CTAATCACAAAAAGAATAAAGATTATTACT-
127 CTAATCATGAAAAGAATGGAGATTATTA-TG
* * * * * * *
2788691 AGAATCCTCGTTTGTCTCATTTGAGGCACGAGCTTAGACTTTA-CAAAA-ATTGGTGACAAGAAA
1 AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTT-TACTTTATCAAAATAGT-GT-A-AAGAAA
* * ** * * * * * *
2788754 GC-CTTTCTTATGAAACCAAAGAATTAATATCGTGTATCCTTATGTGAAGACAAAGTTTATGGTG
62 ACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGA-AATGTTTATGGTC
* **
2788818 CCTAATCATGAAAAGAATGGGGATTAGCATCG
126 CCTAATCATGAAAAGAATGGAGATTATTAT-G
* * * * *
2788850 -CAATTCTTGTTTGTCTTATCTAAGAG-ACAAACTTTACTTCTATCAAAA-ACGGCGGAAAGAAA
1 AGAATTCTTGTTTGTCTTATTTAAG-GCACGAACTTTACTT-TATCAAAATA--GTGTAAAGAAA
* ** ** * * * * * *
2788912 ACATTTTCTTGTGACCCCAAAGCATCAATGCCATGTATCCTAAT-ATAGGGAATGTGTTCTTAGC
62 ACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAAATGT-TT-AT-GG
* * * * *
2788976 TCGC-AATCACGAAAAGAATGGAGACTACTATC
124 TCCCTAATCATGAAAAGAATGGAGATTATTATG
* ** * * * * * * * * *
2789008 AGAGTTCACGCTTT-TCATAATTATGGGATGAATTTTGA-TTTTTGGGAAAATAAG-GCAAAGAA
1 AGAATTCTTG-TTTGTCTTATTTAAGGCACGAACTTT-ACTTTAT--CAAAAT-AGTGTAAAGAA
* * * * ** *** * * * * * * *
2789070 AAGATTTCCATGCAAAAGAAAATTGTGAATATCATTTATCATAATGAGGAGAATGTGTTTATAGT
61 AACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAA-ATGTTTATGGT
* * * * *
2789135 GCCTAATCA-CAGAATGAATGAAGATCATTA-G
125 CCCTAATCATGA-AAAGAATGGAGATTATTATG
* * * * * * * *
2789166 TACAATCCTCGTTTGTATCATTTAAGGCACGAGCTTAGACTTTA-CAAAA-ATTGGTGACAAGAA
1 -AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTT-TACTTTATCAAAATAGT-GT-A-AAGAA
* * * * * * * * *
2789229 AGC-CTTTCTTACAAAACGAAAGAATCAATATCGTGTATCTTTATGAGAAGACAAAGTTTATGGT
61 AACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGA-AATGTTTATGGT
* * **
2789293 GCCTAATCATGAAAAGAATGGGGATTAGCATG
125 CCCTAATCATGAAAAGAATGGAGATTATTATG
* * *
2789325 ACAATTCTTGTTTGTCTTATTTAAGAGTCA--AACTTTACTTCTATCAAAAATGGTGGAAAGAAA
1 AGAATTCTTGTTTGTCTTATTTAAG-G-CACGAACTTTACTT-TATC-AAAATAGTGTAAAGAAA
* * * * * * * * * *
2789388 ACATTTTCTTGCGACACCAAAGCATCAATGTCATGTTTCCTAACGA-AGGGAATGTGTTCTTAGC
62 ACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAAATGT-TT-ATGGT
** * * * *
2789452 CCCTAATCCCGAAAGGAATGGAGACTCTTACG
125 CCCTAATCATGAAAAGAATGGAGATTATTATG
* * * * * * * * * *
2789484 AGAA-TCGATGCTTGTCATATTTAAGGGATGAATTTTGA-TATAATGGAAAACAGTGTAGAGAAA
1 AGAATTC-TTGTTTGTCTTATTTAAGGCACGAACTTT-ACT-TTAT-CAAAATAGTGTAAAGAAA
* * ** * * * * * * * * *
2789547 AGA-TTTCAATG-GAAAAGAAAATCATCAATACCGTTTATCCTAATAAGGAGAATGTGTTTATAG
62 ACATTTTC-TTGCG-AAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAA-ATGTTTATGG
* ** **
2789610 TGCCTAATCACAAAAAGAATAAAGATTATTAT-
124 TCCCTAATCATGAAAAGAATGGAGATTATTATG
* * * * * * *
2789642 AGAATCCTCGTTTGTCTCATTTGAGTCACGAAC-TTA---GA-CAAAAATTAGTGGT-AAGAAAG
1 AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTTTACTTTATC-AAAA-TAGT-GTAAAGAAAA
* * * *
2789701 C-CTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTCC
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGA-AATGTTTATGGTCC
* **
2789765 CTAATCATGAAAAGAATGGGGATTAGCATG
127 CTAATCATGAAAAGAATGGAGATTATTATG
* * * *
2789795 ACAATTCTTGTTTGTCTTATTTAAGACACAAACTTTACTTCTATC-AAATACGGTGGAAAGAAAA
1 AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTTTACTT-TATCAAAATA--GTGTAAAGAAAA
* * * * * * * * *
2789859 CATTTTCTTGTGACACCAAAGCATCAATGTCATGTATTCTTTTGA-AGGGAATGTGTTCTTCGCT
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAAATGT-TT-AT-GGT
* * * ** * *
2789923 CCC-AATCTTGAAAAAAAAGGAGCCTCTTACG
125 CCCTAATCATGAAAAGAATGGAGATTATTATG
** * ** * * * * * * * ** *
2789954 AGAA-TCGAAGCTTGTCACAATTATGGGATGAATTTTGAAATTAAGGAAAATAGCGTAAAGAAAA
1 AGAATTC-TTGTTTGTCTTATTTAAGGCACGAACTTT--ACTTTATCAAAATAGTGTAAAGAAAA
* * * * ** * * * * * * * * *
2790018 GATTTCCATGCAAAAGAAAATCATGAATATCATTTATCATAATGAGGAGAATGTGTTTATGTTGC
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAA-ATGTTTATGGTCC
** **
2790083 CTAATCACAAAAAGAATAAAGATTATTACT-
127 CTAATCATGAAAAGAATGGAGATTATTA-TG
* * * * * * * *
2790113 AGAATCCTCGTTTGTCTCATTTGAGTCACGAACTTAGACTTTA-CAAAAATTAGTGTCAAGAAAG
1 AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTT-TACTTTATC-AAAA-TAGTGTAAAGAAAA
* * *
2790177 C-CTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTCC
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGA-AATGTTTATGGTCC
* **
2790241 CTAATCATGAAAAGAATGGGGATTAGCATG
127 CTAATCATGAAAAGAATGGAGATTATTATG
* * ** *
2790271 ACAATTCTTGTTTGTCTTATTTAAGAG-ACAAACTTTACTTCTATCAAACACGGTGCAAAGAAAA
1 AGAATTCTTGTTTGTCTTATTTAAG-GCACGAACTTTACTT-TATCAAA-ATAGTGTAAAGAAAA
* * * * * * * * *
2790335 CATTTTCTTGTGACACCAAAGCATCACTATCATGTATTCTTTTGA-AGGGAATGTGTTCTTCGCT
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAAATGT-TT-AT-GGT
* ** * *
2790399 CCC-AATC-TCGAAAAGAAAGGAGCCTCTTACG
125 CCCTAATCAT-GAAAAGAATGGAGATTATTATG
** * ** * * * * * * * ** *
2790430 AGAA-TCGAAGCTTGTCACAATTATGGGATGAATTTTGAAATTAAGGAAAATAGCGTAAAGAAAA
1 AGAATTC-TTGTTTGTCTTATTTAAGGCACGAACTTT--ACTTTATCAAAATAGTGTAAAGAAAA
* * * * ** * * * * * * * *
2790494 GATTTCCATGCAAAAGAAAATCATGAATATCATTTATCATAATGAGGAGAATGTGTTTATGGTGC
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAA-ATGTTTATGGTCC
** **
2790559 CTAATCACAAAAAGAATAAAGATTATTACT-
127 CTAATCATGAAAAGAATGGAGATTATTA-TG
* * * * * * *
2790589 AGAATCCTCGTTTGTCTCATTTGAGGCACGAGCTTAGACTTTA-CAAAA-ATTGGTGACAAGAAA
1 AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTT-TACTTTATCAAAATAGT-GT-A-AAGAAA
* * * * * * * * *
2790652 GC-CTTTCTTACGAAACCAAAGAATTAATATCGTGTATCCTTATGTGAAGACAAAGTTTATGGTG
62 ACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGA-AATGTTTATGGTC
* **
2790716 CCTAATCATGAAAAGAATGGGGATTAGCATCG
126 CCTAATCATGAAAAGAATGGAGATTATTAT-G
* * * * * *
2790748 -CAATTCTTGTTTGTCTTATCTAAGAG-ACAAACTTTACTTCTATCAAAAATGGCGGAAAGAAAA
1 AGAATTCTTGTTTGTCTTATTTAAG-GCACGAACTTTACTT-TATC-AAAATAGTGTAAAGAAAA
* ** ** * * * * * *
2790811 CATTTTCTTGTGACCCCAAAGCATCAATGCCATGTATCCTAAT-ATAGGGAATGTGTTCTTAGCT
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAAATGT-TT-AT-GGT
* * * *
2790875 CCC-AATCACGAAAAGAATGGAGACTACTATC
125 CCCTAATCATGAAAAGAATGGAGATTATTATG
* *** * * * * * * * * *
2790906 AGAGTTGACGCTTT-TCATAATTATGGGATGAA-TTCTGA-TTTTTGGGAAAATAAG-GCAATGA
1 AGAATTCTTG-TTTGTCTTATTTAAGGCACGAACTT-T-ACTTTAT--CAAAAT-AGTGTAAAGA
* ** * * ** * * * * * * * * *
2790967 AAAGATTACCATGCAAAAGAAAATCGTGAATATCATTTATCATAATGAGGAGAATGTGTTTATAG
60 AAACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAA-ATGTTTATGG
* * * *
2791032 TGCCTAATCA-CAGAAAGAATGAAGATCATTA-G
124 TCCCTAATCATGA-AAAGAATGGAGATTATTATG
* * * * * * * *
2791064 TACAATCCTCGTTTGTATCATTTAAGGCACGAGCTTAGACTTTA-CAAAA-ATTGGTGACAAGAA
1 -AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTT-TACTTTATCAAAATAGT-GT-A-AAGAA
* * * * * * * *
2791127 AGCA-TTTCTTACAAAACGAAAGAATCAATATCGTGTATCTTTATGAGAAGACAAAGTTTATGGT
61 AACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGA-AATGTTTATGGT
* * * ** *
2791191 GCCTAATAATGAAAAGAATGGGGATTACCATC
125 CCCTAATCATGAAAAGAATGGAGATTATTATG
* * *
2791223 ACAATTCTTGTTTGTCTTATTTAAGAG-ACAAACTTTACTTCTATCAAAA-ACGGTGGAAAGAAA
1 AGAATTCTTGTTTGTCTTATTTAAG-GCACGAACTTTACTT-TATCAAAATA--GTGTAAAGAAA
* * * * * * *
2791286 ACATTTTC-TGCGACACCAAAGCATCAATGTCATGTTTCC-TA-AAGAAGGGAATGTGTTCTTAG
62 ACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAA-GAAATGT-TT-ATGG
* ** * * * *
2791348 CCCCTAATCCCGAAAGGAATGGAGACTCTTACG
124 TCCCTAATCATGAAAAGAATGGAGATTATTATG
** * * * * * * * * * *
2791381 AGAATTGATGCTTGTCATATTTACGGGATGAATTTTGA-TATAATGGAAAACAGTGTAGAGAAAA
1 AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTTT-ACT-TTAT-CAAAATAGTGTAAAGAAAA
* * ** * * * * * *
2791445 GA-TTTCAATG-GAAAAGAAAATCATCAATA-C-TGTTTATCCTAATAAGGAGAATGTGTTTATA
63 CATTTTC-TTGCG-AAACCAAAGCATCAATATCATG--TATCCTTATGAGAAGAA-ATGTTTATG
* ** **
2791506 GTGCCTAATCACAAAAAGAATAAAGATTATTAT-
123 GTCCCTAATCATGAAAAGAATGGAGATTATTATG
* ** * * * * * * *
2791539 AGAATCCTCATTTGTCTCAATTGAGTCACAAAC-TTA---GA-CAAAAATTAGTGGT-AAGAAAG
1 AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTTTACTTTATC-AAAA-TAGT-GTAAAGAAAA
* ** * *
2791598 C-CTTTCTTATGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTCC
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGA-AATGTTTATGGTCC
* **
2791662 CTAATCATGAAAAGAATGGGGATTAGCATG
127 CTAATCATGAAAAGAATGGAGATTATTATG
* * * *
2791692 ACAATTCTTGTTTGTCTTATTTAAGACACAAACTTTACTTCTATC-AAATACGGTGGAAAGAAAA
1 AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTTTACTT-TATCAAAATA--GTGTAAAGAAAA
* * * * * * * *
2791756 CATTTTCTTGCGACACCAAAGCATCAATGTCATGTATTCTTTTGA-AGGGAATGTGTTCTTCGCT
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAAATGT-TT-AT-GGT
** * *
2791820 CCC-AATC-TCGAAAAGAATGGAGCCTCTTACG
125 CCCTAATCAT-GAAAAGAATGGAGATTATTATG
* ** * * * * * * * * * ** * *
2791851 AGAATCCAAGCTTGTCATAATTATGGGATGAATTTTGAAATTAAGGAAAATAGCGTAAAGAAAAG
1 AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTTT--ACTTTATCAAAATAGTGTAAAGAAAAC
* * * ** * * * * * * * *
2791916 ATTTCCATGCAAAAGAAAATCATGAATATCATTTATCATAATGAGGAGAATGTGTTTATGGTGCC
64 ATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAA-ATGTTTATGGTCCC
** **
2791981 TAATCACAAAAAGAATAAAGATTATTACT-
128 TAATCATGAAAAGAATGGAGATTATTA-TG
* * * * * * * * *
2792010 AGAATCCTCGTGTGTCTCATTTGAGTCACGAACTTAGACTTTA-CAAAAATTAGTGTCAAGAAAG
1 AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTT-TACTTTATC-AAAA-TAGTGTAAAGAAAA
* * * *
2792074 C-CTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATTGTCC
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGA-AATGTTTATGGTCC
**
2792138 CTAATCATGAAAAGAATAGG-GATTAGCATG
127 CTAATCATGAAAAGAAT-GGAGATTATTATG
* * ** *
2792168 ACAATTCTTGTTTGTCTTATTTAAGAG-ACAAACTTTACTTCTATCAAACACGGTGCAAAGAAAA
1 AGAATTCTTGTTTGTCTTATTTAAG-GCACGAACTTTACTT-TATCAAA-ATAGTGTAAAGAAAA
* * * * * * * *
2792232 CATTTTCTTGCGACACCAAAGCATCACTATCATGTATTCTTTTGA-AGGGAATGTGTTCTTCGCT
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAAATGT-TT-AT-GGT
* ** * *
2792296 CCC-AATC-TCAAAAAGAATGGAGCCTCTTACG
125 CCCTAATCAT-GAAAAGAATGGAGATTATTATG
** * ** * * * * * * * ** *
2792327 AGAA-TCGAAGCTTGTCACAATTATGGGATGAATTTTGAAATTAAGGAAAATAGCGTAAAGAAAA
1 AGAATTC-TTGTTTGTCTTATTTAAGGCACGAACTTT--ACTTTATCAAAATAGTGTAAAGAAAA
* * * * ** * * * * * * * *
2792391 GATTTCCATGCAAAAGAAAATCATGAATATCATTTATCATAATGAGGAGAATGTGTTTATGGTGC
63 CATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAA-ATGTTTATGGTCC
* **
2792456 CTAATCA-CAAAAGGAATCAAGATTATTACT-
127 CTAATCATGAAAA-GAATGGAGATTATTA-TG
* * * * * * *
2792486 AGAATCCTCGTTTGTCTCATTTGAGGCACGAGCTTAGACTTTA-CAAAA-ATTGGTGACAAGAAA
1 AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTT-TACTTTATCAAAATAGT-GT-A-AAGAAA
* * ** * * * * * *
2792549 GC-CTTTCTTATGAAACCAAAGAATTAATATCGTGTATCCTTATGTGAAGACAAAGTTTATGGTG
62 ACATTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGA-AATGTTTATGGTC
* **
2792613 CCTAATCATGAAAAGAATGGGGATTAGCATCG
126 CCTAATCATGAAAAGAATGGAGATTATTAT-G
* * * * *
2792645 -CAATTCTTGTTTGTCTTATCTAAGAG-ACAAACTTTACTTCTATCAAAA-ACGGCGGAAAGAAA
1 AGAATTCTTGTTTGTCTTATTTAAG-GCACGAACTTTACTT-TATCAAAATA--GTGTAAAGAAA
* *
2792707 ACATTTTCTTGC-AACCCCAAAGCATCATTATCATGTAT
62 ACATTTTCTTGCGAA-ACCAAAGCATCAATATCATGTAT
2792745 TCTTGTGAAG
Statistics
Matches: 13528, Mismatches: 5330, Indels: 2402
0.64 0.25 0.11
Matches are distributed among these distances:
152 329 0.02
153 205 0.02
154 27 0.00
155 18 0.00
156 71 0.01
157 631 0.05
158 4569 0.34
159 6785 0.50
160 638 0.05
161 250 0.02
162 5 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.30
Consensus pattern (156 bp):
AGAATTCTTGTTTGTCTTATTTAAGGCACGAACTTTACTTTATCAAAATAGTGTAAAGAAAACAT
TTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAAATGTTTATGGTCCCTAA
TCATGAAAAGAATGGAGATTATTATG
Found at i:2795359 original size:42 final size:42
Alignment explanation
Indices: 2795312--2795420 Score: 155
Period size: 42 Copynumber: 2.6 Consensus size: 42
2795302 CTTCTTCTCT
* * ** *
2795312 TCTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTTATATC
1 TCTCCTCCTATCATCCCTCCTATCTCTACCATCTCTCATATC
* *
2795354 TCTCCTCCTATCATCCCTCTTATCTCTACCATCTCTCCTATC
1 TCTCCTCCTATCATCCCTCCTATCTCTACCATCTCTCATATC
2795396 TCTCCTCCTATCATCCCTCCTATCT
1 TCTCCTCCTATCATCCCTCCTATCT
2795421 TTTCTTTCTC
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 59 1.00
ACGTcount: A:0.13, C:0.44, G:0.01, T:0.42
Consensus pattern (42 bp):
TCTCCTCCTATCATCCCTCCTATCTCTACCATCTCTCATATC
Found at i:2795372 original size:12 final size:12
Alignment explanation
Indices: 2795357--2795419 Score: 50
Period size: 12 Copynumber: 5.8 Consensus size: 12
2795347 TTATATCTCT
2795357 CCTCCTATCATC
1 CCTCCTATCATC
2795369 CCT-CT-T-AT-
1 CCTCCTATCATC
*
2795377 -CT-CTACCATC
1 CCTCCTATCATC
*
2795387 TCTCCTATC-TC
1 CCTCCTATCATC
2795398 TCCTCCTATCATC
1 -CCTCCTATCATC
2795411 CCTCCTATC
1 CCTCCTATC
2795420 TTTTCTTTCT
Statistics
Matches: 41, Mismatches: 3, Indels: 14
0.71 0.05 0.24
Matches are distributed among these distances:
7 4 0.10
9 4 0.10
10 1 0.02
11 6 0.15
12 24 0.59
13 2 0.05
ACGTcount: A:0.14, C:0.48, G:0.00, T:0.38
Consensus pattern (12 bp):
CCTCCTATCATC
Found at i:2798354 original size:32 final size:33
Alignment explanation
Indices: 2798292--2798355 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
2798282 TACAAGCCAA
** *
2798292 TGTATCGATACAATTTTTTGTGTATGGATACAT
1 TGTATCGATACAATACTTTGTGTATCGATACAT
2798325 TGTATCGATAC-ATACTTTGTGTATCGATACA
1 TGTATCGATACAATACTTTGTGTATCGATACA
2798356 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.28, C:0.12, G:0.17, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAT
Found at i:2799011 original size:39 final size:37
Alignment explanation
Indices: 2798968--2799052 Score: 93
Period size: 39 Copynumber: 2.2 Consensus size: 37
2798958 TCTTTTCTTT
2798968 TCCCCTTAACTAA-AGTAATTTTAACAAATTCGTA-CATTC
1 TCCCCTTAA-TAAGA-TAATTTTAACAAATT--TACCATTC
*
2799007 TCCCCCTTAATAAGATAATTTTAGCAAATTTACGCATTC
1 T-CCCCTTAATAAGATAATTTTAACAAATTTAC-CATTC
2799046 TCCCCTT
1 TCCCCTT
2799053 TTATTAAAAA
Statistics
Matches: 41, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
37 2 0.05
38 6 0.15
39 24 0.59
40 9 0.22
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (37 bp):
TCCCCTTAATAAGATAATTTTAACAAATTTACCATTC
Found at i:2800916 original size:13 final size:13
Alignment explanation
Indices: 2800898--2800935 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
2800888 ATAATCCCCC
2800898 TGTATCGATACAG
1 TGTATCGATACAG
*
2800911 TGTATCGATACAT
1 TGTATCGATACAG
2800924 TGTATCGATACA
1 TGTATCGATACA
2800936 AAGAAAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:2807194 original size:159 final size:155
Alignment explanation
Indices: 2806045--2809554 Score: 709
Period size: 159 Copynumber: 22.1 Consensus size: 155
2806035 CATTCTTATC
* * ** * * *
2806045 CCATTCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAAGATACACGATATTGATTC
1 CCATTCTTTTCGTGATTAGGCACTATAAACACAT-TCTCCTCATAAGGATACACGATATTGATGC
** * * *
2806109 TTTGGTTTCGTAAGAAAGGCTTTCTACCACTAATTTTTGTAAAGTCTAAGTTCGCACCTCAAATG
65 TTTGGTTTCGTAAGAAAGGCTTTCTTTCACCAATTTTTGTAAAGTCAAAGTTCG-TCCTCAAATG
2806174 AGACAAACGAGGATTCTTGTCATGATCT
129 AGACAAAC-AGGATTCTTGTCATGATCT
* * * * * * * * *
2806202 TCAGTCTTTTTGTGATTAGGCACTATAAACACATTCACCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACTATAAACACATTCTCCTCATAAGGATACACGATATTGATG-C
** * ** * ** ** * *
2806267 TTTCTTTTCCTTGGAAA-TCTTTTCTTTTC-CTTATTTTCCTAATA-TCAAAATTCATCC-CATA
65 TTTGGTTTCGTAAGAAAGGC-TTTC-TTTCACCAATTTTTGTAA-AGTCAAAGTTCGTCCTCA-A
* * * * *
2806328 ATTATGACAAGCATCGATTCTCGT-AAGAGTCT
126 ATGA-GACAAACA-GGATTCTTGTCATGA-TCT
* * * * * *
2806360 CCATTCTTTTCGAGATT-GGGAGCTA-AGAACACATTC-CCTTCATTAGAATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCA-CTATA-AACACATTCTCC-TCATAAGGATACACGATATTGAT
* * * * *
2806422 GCTTTGGTGTCGCT-AGAAAATGTTTTCTTTCCACC-GTTTTTGATAGAAGT-AAAGTTTGTCTC
63 GCTTTGGTTTCG-TAAG-AAAGGCTTTCTTT-CACCAATTTTTG-TA-AAGTCAAAGTTCGTC-C
* * * * * * *
2806484 TTAAATAAGATAAACAAGA--ATTGTCATTCTTATCC
122 TCAAATGAGACAAACAGGATTCTTGTCA---TGATCT
* * ** * * *
2806519 CCATTCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAAGATACACGATATTGATTC
1 CCATTCTTTTCGTGATTAGGCACTATAAACACAT-TCTCCTCATAAGGATACACGATATTGATGC
* *
2806583 TTTGGTTTCGTAAGAAAGGCTTTCTTACCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
65 TTTGGTTTCGTAAGAAAGGCTTTCTT-TCACCAATTTTTGTAAAGTCAAAGTTCGT-CCTCAAAT
* * *
2806648 GAGACAAATGAGGGTTCTAGTCATGATCT
128 GAGACAAA-CAGGATTCTTGTCATGATCT
* * *
2806677 TCATT-TTTT-GTGATTAGGCACTATAAACACATTCTCCTTA-ATAGGATAAACGATATTGATGA
1 CCATTCTTTTCGTGATTAGGCACTATAAACACATTCTCCTCATA-AGGATACACGATATTGATG-
* ** * * ** ** * *
2806739 TTTTCTTTTCCGT-TGAAA-TCTTTTCTTTGCA-CTGTTTTCCATAATA-TCAAAATTCATCCCT
64 CTTTGGTTT-CGTAAGAAAGGC-TTTCTTT-CACCAATTTT-TGTAA-AGTCAAAGTTCGT-CCT
* * * * *
2806800 TAAAT-ATGACAAGCATCGATTCTCGT-AGGAGTCT
123 CAAATGA-GACAAACA-GGATTCTTGTCATGA-TCT
* * * * * **
2806834 CCATTCTTTTCGAGAAT-GGGAGCTA-AGAACACATTC-CCTTCATTAGGATACATGCCATTGAT
1 CCATTCTTTTCGTGATTAGGCA-CTATA-AACACATTCTCC-TCATAAGGATACACGATATTGAT
* * * * * * *
2806896 GCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACC-GTTTTTGATCGAAGT-AAAGTTTGTCTCT
63 GCTTTGGTTTCGTAAG-AAAGGCTTTCTTT-CACCAATTTTTG-T-AAAGTCAAAGTTCGTC-CT
* * * * *
2806959 TAAATAAGACAAACAAGA--ATTGTCATGCTAATCC
123 CAAATGAGACAAACAGGATTCTTGTCATG---ATCT
* * ** * *
2806993 CCATTCTTTTCATGATTAGGCACCATAAAC-TTTATCTTCTCATAAGTATACACGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACTATAAACACAT-TCTCCTCATAAGGATACACGA-TATTGATG
* * *
2807057 CTTTCGTTTCGTAAAAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA
64 CTTTGGTTTCGTAAGAAAGGCTTTCTT-TCACCAATTTTTGTAAAGTCAAAGTTCGT-CCTCAAA
2807122 TGAGACAAACGAGGATTCTTGTCATGATCT
127 TGAGACAAAC-AGGATTCTTGTCATGATCT
* * * * * * *
2807152 TCATTCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGAT
1 CCATTCTTTTCGTGATTAGGCACTATAAACACATTCTCCTCATAAGGATACACGATATTGATGCT
* * * * * * * *
2807217 TTTGTATT-GCATGGAAA-TCTTTTCTTAGC-CCCATTTTCCT-TAATA-TCAAAATTCATCC-C
66 TTGGT-TTCGTA-AGAAAGGC-TTTCTT-TCACCAATTTT--TGTAA-AGTCAAAGTTCGTCCTC
* * ** * * *
2807276 ATAATTACGACAAGCTTCGATTCTCGT-AGGAGGCT
124 A-AATGA-GACAAAC-AGGATTCTTGTCATGA-TCT
* * * * * ** *
2807311 CCATGCTTTTCGAGATT-GGGAGCTA-AGAACACAATC-CCTTCATAAGGATGCGTGACATTGAT
1 CCATTCTTTTCGTGATTAGGCA-CTATA-AACACATTCTCC-TCATAAGGATACACGATATTGAT
* * * * * * * * *
2807373 GCTCTAGTGTCGCAAGAAAATGTTTTCTTTCCACC-GTTTTTGATAGAAGT-AATGTTTGTCCCT
63 GCTTTGGTTTCGTAAG-AAAGGCTTTCTTT-CACCAATTTTTG-TA-AAGTCAAAGTTCGT-CCT
* * * *
2807436 CAAATAAGACAAACACGA-T-TTGTCAAGCTAATCC
123 CAAATGAGACAAACAGGATTCTTGTC-A--TGATCT
* * ** * *
2807470 CCATTCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGGATACATGATATTGATGC
1 CCATTCTTTTCGTGATTAGGCACTATAAACACAT-TCTCCTCATAAGGATACACGATATTGATGC
* * * * *
2807534 TTTGGTTTCATAAGAAAGGCTTTCTTGCCACC-ATTGTTTGTAAAGTCTAAGTTCATGCCTCAAG
65 TTTGGTTTCGTAAGAAAGGCTTTCTT-TCACCAATT-TTTGTAAAGTCAAAGTTCGT-CCTCAAA
* ** *
2807598 TGAGACAAACGTGGATTCCAGTAATGATCT
127 TGAGACAAAC-AGGATTCTTGTCATGATCT
* * ** * * *
2807628 TCATTCTTTTTGTGATTAGGCACTATAAACACATTCAGCTCAGT-AGGATAAACGATATTCATGA
1 CCATTCTTTTCGTGATTAGGCACTATAAACACATTCTCCTCA-TAAGGATACACGATATTGATGC
** * * ** * * * **
2807692 TTTTCTTTTGCT-TGAAAATCTTTTCTTTTC-CC-TTTTTTCCTTAATA-TCAAAATTCAACC-C
65 TTTGGTTTCG-TAAGAAAGGC-TTTC-TTTCACCAATTTTT--GTAA-AGTCAAAGTTCGTCCTC
* * * ** *
2807752 ATAATTACGACAAGCATCGATTCTCAT-AAGAGTCT
124 A-AATGA-GACAAACA-GGATTCTTGTCATGA-TCT
* * ** * ** * * *
2807787 TCACTCTTTTCCAGATT-GGGAGCTAGGAACACATTC-CCTTCATTAGGATACATGACATTGATG
1 CCATTCTTTTCGTGATTAGGCA-CTATAAACACATTCTCC-TCATAAGGATACACGATATTGATG
* * * * * * * *
2807850 CTCTGGTGTCGCAAGAAAATGTTTTCTTTC-CGCCATTTTTGATAGAAGT-AAAGTTTGTCTCTT
64 CTTTGGTTTCGTAAG-AAAGGCTTTCTTTCAC-CAATTTTTG-TA-AAGTCAAAGTTCGTC-CTC
* * * *
2807913 AAATAAGACAAACAAGA--ATTGTCATGCTAATCC
124 AAATGAGACAAACAGGATTCTTGTCATG---ATCT
* * * ** * * *
2807946 CCATTCTTTTCATGATTAGCCACCATAAAC-TTTGTCTTCTCATAAAGATACACGATATTGATTC
1 CCATTCTTTTCGTGATTAGGCACTATAAACACAT-TCTCCTCATAAGGATACACGATATTGATGC
** * *
2808010 TTTGGTTTCGGGAGAAAGGCTTTCTTTTCACCAATTTTTGTAAAGTCTAAGTTCGTGACTCAAAT
65 TTTGGTTTCGTAAGAAAGGCTTTC-TTTCACCAATTTTTGTAAAGTCAAAGTTCGT-CCTCAAAT
* * * *
2808075 GAGACAAACGACGATTCTAGTAATGAACT
128 GAGACAAAC-AGGATTCTTGTCATGATCT
* * * * * *
2808104 TCATTCTTTTTGT-AGTTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGA
1 CCATTCTTTTCGTGA-TTAGGCACTATAAACACATTCTCCTCATAAGGATACACGATATTGATG-
* ** * * * * * *
2808168 TTTTCTTTTGCGT-GGGAA-TCTTTTCTTT-ACGCTATTTTCCT-TAATA-TCAAAATTCATCC-
64 CTTTGGTTT-CGTAAGAAAGGC-TTTCTTTCAC-CAATTTT--TGTAA-AGTCAAAGTTCGTCCT
* * ** * *
2808227 CATAATTAGGACAAGCTTCGATTCTTGT-AAGAGGCT
123 CA-AATGA-GACAAAC-AGGATTCTTGTCATGA-TCT
** * * * * * *
2808263 CCAGGCTTTTCGAGGTT-GGGAGCTA-AGAACACATTC-CCTTCATAAGGAAACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCA-CTATA-AACACATTCTCC-TCATAAGGATACACGATATTGAT
* * * * ** **
2808325 GCTTTGGTGTCGTAAGAAAATGTTTTCCTT--CCTTTGTTTTAGATAGAAGT-AAAGTTTATCCC
63 GCTTTGGTTTCGTAAG-AAAGGCTTTCTTTCACCAAT-TTTT-G-TA-AAGTCAAAGTTCGT-CC
* * * * * *
2808387 TCAAATAAGGCAAACAAGA--ATTATCAAGCTAATC-
122 TCAAATGAGACAAACAGGATTCTTGTC-A--TGATCT
* * * ** * *
2808421 CCTATTATTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGGATACATGATATTGATG
1 CC-ATTCTTTTCGTGATTAGGCACTATAAACACAT-TCTCCTCATAAGGATACACGATATTGATG
* * * * * * *
2808485 CTTTGGATTCATAAGAAAGGCTTT-TTTGCCACC-ATTTTCTCTAAAGCCTAAGTTCATGCCTTA
64 CTTTGGTTTCGTAAGAAAGGCTTTCTTT--CACCAATTTT-TGTAAAGTCAAAGTTCGT-CCTCA
* * * *
2808548 AGTGAGACAAACGTGGATTCTAGTAATGATCT
125 AATGAGACAAAC-AGGATTCTTGTCATGATCT
* * * * * * * * * *
2808580 TCATTCTTTTTGTGATTAAGCACTATATACACATTCACCTCATTAGGATAGACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACTATAAACACATTCTCCTCATAAGGATACACGATATTGATGCT
** * ** * * * * **
2808645 TTTCTTTTGCTTGGAAA-TCTTTTCTTAGC-CCCATTTTCCT-TAATA-TCAAAATTTATCC-CA
66 TTGGTTTCG-TAAGAAAGGC-TTTCTT-TCACCAATTTT--TGTAA-AGTCAAAGTTCGTCCTC-
* * ** * * *
2808705 AAATTATGACAAGCTTCGATTCTCGTAAGTG-GCT
124 AAATGA-GACAAAC-AGGATTCTTGTCA-TGATCT
* * * * *
2808739 CCATGCTTTTCGAGATT-GGGAGCTA-AGAACACATTC-CCTTCATAAGGATACATGACGA-TGA
1 CCATTCTTTTCGTGATTAGGCA-CTATA-AACACATTCTCC-TCATAAGGATACACGA-TATTGA
* * * * * * *
2808800 TGCTCTGGTGTCGCAAGAAAATGTTTTCTTTCCACC-GTTTTTGATAGAAGT-AAAGTTTGTCTC
62 TGCTTTGGTTTCGTAAG-AAAGGCTTTCTTT-CACCAATTTTTG-TA-AAGTCAAAGTTCGTC-C
* * * *
2808863 TTAAATAAGACAAACAAGA--ATTGTCATGCTAATC-
122 TCAAATGAGACAAACAGGATTCTTGTCATG---ATCT
* * * ** * * * *
2808897 CACATTATTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAAGATACATGACATTGATG
1 C-CATTCTTTTCGTGATTAGGCACTATAAACACAT-TCTCCTCATAAGGATACACGATATTGATG
* ** *
2808961 CTTTGGTTTCGTAAGAAAGGCTTTCTTGCCAATAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA
64 CTTTGGTTTCGTAAGAAAGGCTTTCTT-TCACCAATTTTTGTAAAGTCAAAGTTCGT-CCTCAAA
* **
2809026 TGAGACAAACGAGGATTCTAGAAATGATCT
127 TGAGACAAAC-AGGATTCTTGTCATGATCT
** * * * * * *
2809056 TTATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCAT-ATTAGGATAAACAAGT-TTCACG
1 CCATTCTTTTCGTGATTAGGCACTATAAACACATTCTCC-TCATAAGGATACACGA-TATTGATG
* ** ** * * * ** * *
2809119 GTTTTCTTTTATAAGGAAA-TCTTTTCTTTGC-GCTATTTTCCT-TAATTTCAAAATTCATCC-C
64 CTTTGGTTTCGTAA-GAAAGGC-TTTCTTT-CACCAATTTT--TGTAAAGTCAAAGTTCGTCCTC
* ** * * *
2809180 ATAATTATGA-AAAGCTTCGATTCTCGT-AAGAGGCT
124 A-AATGA-GACAAA-C-AGGATTCTTGTCATGA-TCT
* * * * * * * * *
2809215 CCATTCTTTTCGAGATT-GGGAGCGA-AGAACACATTGTCTTCATAAGAACACATGACATTGATG
1 CCATTCTTTTCGTGATTAGGCA-CTATA-AACACATTCTCCTCATAAGGATACACGATATTGATG
* * * * * * *
2809278 CTTTGGTGTC-TCAAGAAAATGTTTTCTTTCCACC-GTGTTTGATGGAAGT-AAAGTTTG-CCTC
64 CTTTGGTTTCGT-AAG-AAAGGCTTTCTTT-CACCAATTTTTG-T-AAAGTCAAAGTTCGTCCTC
* * * *
2809339 TTAAATAAGACAAACAAGA--ATTGTCATGCTAATCC
124 --AAATGAGACAAACAGGATTCTTGTCATG---ATCT
* * ** ** * *
2809374 CCATTCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTTTCATCAGGATACACGATATTGATTC
1 CCATTCTTTTCGTGATTAGGCACTATAAACACAT-TCTCCTCATAAGGATACACGATATTGATGC
* * * *
2809438 TTTGGTTTTGTAAGAAAGGCTTTCTTGTCACCAACTTTTGTTAAGTCTAAGTTCGTGCCTCAAAT
65 TTTGGTTTCGTAAGAAAGGCTTTCTT-TCACCAATTTTTGTAAAGTCAAAGTTCGT-CCTCAAAT
*
2809503 GAGACAAACGAGGATTCTAT-TAATGATCT
128 GAGACAAAC-AGGATTCT-TGTCATGATCT
* * *
2809532 TCATTCTTTTTGTGATTGGGCAC
1 CCATTCTTTTCGTGATTAGGCAC
2809555 ACATTCTTCT
Statistics
Matches: 2341, Mismatches: 723, Indels: 577
0.64 0.20 0.16
Matches are distributed among these distances:
155 3 0.00
156 74 0.03
157 191 0.08
158 745 0.32
159 1124 0.48
160 161 0.07
161 34 0.01
162 9 0.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (155 bp):
CCATTCTTTTCGTGATTAGGCACTATAAACACATTCTCCTCATAAGGATACACGATATTGATGCT
TTGGTTTCGTAAGAAAGGCTTTCTTTCACCAATTTTTGTAAAGTCAAAGTTCGTCCTCAAATGAG
ACAAACAGGATTCTTGTCATGATCT
Found at i:2807774 original size:476 final size:475
Alignment explanation
Indices: 2805814--2810370 Score: 6445
Period size: 476 Copynumber: 9.6 Consensus size: 475
2805804 TGTTTCCCGT
* * * *
2805814 TTTTCC-TAAGATCAAATAATTC-TCCCATAATTATGACAAGCATCACGAGTCTCATAAGA-G-T
1 TTTTCCTTAATATC-AA-AATTCATCCCATAATTATGACAAGC-T-TCGATTCTCGTAAGAGGCT
* * * *
2805875 CCATCCTTCGTTTCGAGATTGGGAGCTAAGAACAAACACATTCCTTTCA-AATAGATACATGGCA
62 CCATGC-T--TTTCGAGATTGGGAGCTAAG----AACACATTCCCTTCATAA-GGATACATGACA
* * *
2805939 TTGAATACTTTGGTGTCGCAAGAAAAAAGGTTTGTC-TTCGCATCAGTTTTTGATAG-AGTAAAG
119 TTG-ATGCTTTGGTGTCGCAAG--AAAATGTTT-TCTTTC-CA-CCGTTTTTGATAGAAGTAAAG
* * *
2806002 TTTGTCTCTTAAATAAGACAAACAAGAGTTGTTCATTCTTAT-CCCATTCTTTTCATGATTAGGC
178 TTTGTCTCTTAAATAAGACAAACAAGAATTG-TCATGCTAATCCCCATTCTTTTCATGATTAGGC
*
2806066 ACCATAAACTTTGTCTTCTCATAAAGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTT
242 ACCATAAACTTTGTCTTCTCATAAAGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGCTT
* * ** * *
2806131 TC-TACCACTAATTTTTGTAAAGTCTAAGTTCGCACCTCAAATGAGACAAACGAGGATTCTTGTC
307 TCTTGCCAC-CATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTA
* *
2806195 ATGATCTTCAGTCTTTTTGTGATTAGGCACTATAAACACATTCACCTCATTAGGATAAACGATAT
371 ATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATAT
* * *
2806260 TCACGATTTTCTTTTCCTTGGAAATCTTTTCTTTTCCTTA
436 TCACGATTTTCTTTTGCTTGGAAATCTTTTCTTTGCCCTA
* *
2806300 TTTTCC-TAATATCAAAATTCATCCCATAATTATGACAAGCATCGATTCTCGTAAGAGTCTCCAT
1 TTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCAT
* * *
2806364 TCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATTAGAATACATGACATTGATGCTTTGG
66 GCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGG
*
2806429 TGTCGCTAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGA
131 TGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGA
* * *
2806494 TAAACAAGAATTGTCATTCTTATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCT
196 CAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCT
* *
2806559 CATAAAGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTACCACCAATTTTTGT
261 CATAAAGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGCCACC-ATTTTTGT
* * *
2806624 AAAGTCTAAGTTCGTGCCTCAAATGAGACAAATGAGGGTTCTAGTCATGATCTTCA-T-TTTTTG
325 AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTG
* * * * *
2806687 TGATTAGGCACTATAAACACATTCTCCTTAATAGGATAAACGATATTGATGATTTTCTTTTCCGT
390 TGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGC-T
* *
2806752 T-GAAATCTTTTCTTTGCACTG
454 TGGAAATCTTTTCTTTGCCCTA
* * * * * *
2806773 TTTTCCATAATATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTAGGAGTCTCCAT
1 TTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCAT
* * * *
2806838 TCTTTTCGAGAATGGGAGCTAAGAACACATTCCCTTCATTAGGATACATGCCATTGATGCTTTGG
66 GCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGG
*
2806903 TGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATCGAAGTAAAGTTTGTCTCTTAAATAAGA
131 TGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGA
*
2806968 CAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTATCTTCT
196 CAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCT
* * *
2807033 CAT-AAGTATACACGATTATTGATGCTTTCGTTTCGTAAAAAAGGCTTTCTTGTCACCAATTTTT
261 CATAAAG-ATACACGA-TATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGCCACC-ATTTTT
* *
2807097 GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTTGTCATGATCTTCATTCTTTT
323 GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTT
* * * *
2807162 TGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTGTATTGC
388 TGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGC
* * *
2807227 ATGGAAATCTTTTCTTAGCCCCA
453 TTGGAAATCTTTTCTTTGCCCTA
* *
2807250 TTTTCCTTAATATCAAAATTCATCCCATAATTACGACAAGCTTCGATTCTCGTAGGAGGCTCCAT
1 TTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCAT
* * * * *
2807315 GCTTTTCGAGATTGGGAGCTAAGAACACAATCCCTTCATAAGGATGCGTGACATTGATGCTCTAG
66 GCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGG
* * *
2807380 TGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAATGTTTGTCCCTCAAATAAGA
131 TGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGA
* * *
2807445 CAAACACGATTTGTCAAGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCT
196 CAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCT
* * *
2807510 CATAAGGATACATGATATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTTGCCACCATTGTTTGT
261 CATAAAGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGCCACCATT-TTTGT
* * * *
2807575 AAAGTCTAAGTTCATGCCTCAAGTGAGACAAACGTGGATTCCAGTAATGATCTTCATTCTTTTTG
325 AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTG
** * *
2807640 TGATTAGGCACTATAAACACATTCAGCTCAGTAGGATAAACGATATTCATGATTTTCTTTTGCTT
390 TGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCTT
* * *
2807705 GAAAATCTTTTCTTTTCCCTT
455 GGAAATCTTTTCTTTGCCCTA
* * * * * *
2807726 TTTTCCTTAATATCAAAATTCAACCCATAATTACGACAAGCATCGATTCTCATAAGAGTCTTCAC
1 TTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCA-
* * * *
2807791 T-CTTTTCCAGATTGGGAGCTAGGAACACATTCCCTTCATTAGGATACATGACATTGATGCTCTG
65 TGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTG
* *
2807855 GTGTCGCAAGAAAATGTTTTCTTTCCGCCATTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAG
130 GTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAG
*
2807920 ACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGCCACCATAAACTTTGTCTTC
195 ACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTC
* ** **
2807985 TCATAAAGATACACGATATTGATTCTTTGGTTTCGGGAGAAAGGCTTTCTTTTCACCAATTTTTG
260 TCATAAAGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGCCACC-ATTTTTG
* * *
2808050 TAAAGTCTAAGTTCGTGACTCAAATGAGACAAACGACGATTCTAGTAATGAACTTCATTCTTTTT
324 TAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTT
2808115 GT-AGTTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGC
389 GTGA-TTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGC
* * * *
2808179 GTGGGAATCTTTTCTTTACGCTA
453 TTGGAAATCTTTTCTTTGCCCTA
* * *
2808202 TTTTCCTTAATATCAAAATTCATCCCATAATTAGGACAAGCTTCGATTCTTGTAAGAGGCTCCAG
1 TTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCAT
* *
2808267 GCTTTTCGAGGTTGGGAGCTAAGAACACATTCCCTTCATAAGGAAACATGACATTGATGCTTTGG
66 GCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGG
* * *** * * * * *
2808332 TGTCGTAAGAAAATGTTTTCCTTCCTTTGTTTTAGATAGAAGTAAAGTTTATCCCTCAAATAAGG
131 TGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGA
* * * *
2808397 CAAACAAGAATTATCAAGCTAATCCCTATTATTTTCATGATTAGGCACCATAAACTTTGTCTTCT
196 CAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCT
* * * * * *
2808462 CATAAGGATACATGATATTGATGCTTTGGATTCATAAGAAAGGCTTTTTTGCCACCATTTTCTCT
261 CATAAAGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGCCACCATTTT-TGT
* * * * *
2808527 AAAGCCTAAGTTCATGCCTTAAGTGAGACAAACGTGGATTCTAGTAATGATCTTCATTCTTTTTG
325 AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTG
* * * *
2808592 TGATTAAGCACTATATACACATTCACCTCATTAGGATAGACGATATTCACGATTTTCTTTTGCTT
390 TGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCTT
* *
2808657 GGAAATCTTTTCTTAGCCCCA
455 GGAAATCTTTTCTTTGCCCTA
* * *
2808678 TTTTCCTTAATATCAAAATTTATCCCAAAATTATGACAAGCTTCGATTCTCGTAAGTGGCTCCAT
1 TTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCAT
*
2808743 GCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACGA-TGATGCTCTG
66 GCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC-ATTGATGCTTTG
2808807 GTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAG
130 GTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAG
* *
2808872 ACAAACAAGAATTGTCATGCTAATCCACATTATTTTCATGATTAGGCACCATAAACTTTGTCTTC
195 ACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTC
* * **
2808937 TCATAAAGATACATGACATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGCCAATAATTTTTG
260 TCATAAAGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGCC-ACCATTTTTG
* *
2809002 TAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGAAATGATCTTTATTCTTTTT
324 TAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTT
* *
2809067 GTGATTAGGCACTATAAACACATTCTCCAT-ATTAGGATAAACAAGT-TTCACGGTTTTCTTTT-
389 GTGATTAGGCACTATAAACACATTCTCC-TCATTAGGATAAACGA-TATTCACGATTTTCTTTTG
* * *
2809129 ATAAGGAAATCTTTTCTTTGCGCTA
452 CT-TGGAAATCTTTTCTTTGCCCTA
* *
2809154 TTTTCCTTAATTTCAAAATTCATCCCATAATTATGAAAAGCTTCGATTCTCGTAAGAGGCTCCAT
1 TTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCAT
* * ** * *
2809219 TCTTTTCGAGATTGGGAGCGAAGAACACATTGTCTTCATAAGAACACATGACATTGATGCTTTGG
66 GCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGG
* * * *
2809284 TGTCTCAAGAAAATGTTTTCTTTCCACCGTGTTTGATGGAAGTAAAGTTTGCCTCTTAAATAAGA
131 TGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGA
*
2809349 CAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTTT
196 CAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCT
* * * * * *
2809414 CATCAGGATACACGATATTGATTCTTTGGTTTTGTAAGAAAGGCTTTCTTGTCACCAACTTTTGT
261 CATAAAGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGCCACC-ATTTTTGT
* *
2809479 TAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTATTAATGATCTTCATTCTTTTTG
325 AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTG
* * * *
2809544 TGATT-GG-GC-----ACACATTCTTCTTATTAGGATAAACGATATTCACGATTTTCTTTTGCAT
390 TGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCTT
* *
2809602 GGAAATCTTTTCCTTGCGCTA
455 GGAAATCTTTTCTTTGCCCTA
* *
2809623 TTTTCCTTAATTTCAAAATTCATCCCACAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCAT
1 TTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCAT
* * * * *
2809688 TCTTTTCGAAATTGGGAGCAAAGAACACATTCCCTTCATAAGAATACATGACATTGACGCTTTGG
66 GCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGG
* * *
2809753 TGTCGCAAGAAAATGCTTTCTTTCCACCGTGTTTGATAGAAGTAAAGTTTGTCTCTTAAATATGA
131 TGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGA
*
2809818 CAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCCCCATAAACTTTGTCTTCT
196 CAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCT
* * * * * *
2809883 CATAAAGATACATGATATTGATGCTTTGGGTTCATAAGAAAGGCTTTTTTACCACCATTTTCTCT
261 CATAAAGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGCCACCATTTT-TGT
* * *
2809948 AAAGTCTAAGTTCATGCCTTAAGTGAGACAAAC-ATGGATTCTAGTAATGATCTTCATTCTTTTT
325 AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGA-GGATTCTAGTAATGATCTTCATTCTTTTT
* * **
2810012 GTGATTAGGCACTATATACACATTCACCTCATTAGGATAGTCGATATTCACGATTTTCTTTTGCT
389 GTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCT
* *
2810077 TGGAAATCTTTTCTTAGCCTTA
454 TGGAAATCTTTTCTTTGCCCTA
* *
2810099 TTTTCCTTAATATCAAAATTTATCCCATAATTATGACAAGCTTCGATTCTCGTAAGTGGCTCCAT
1 TTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCAT
*
2810164 GCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACGA-TGATGCTCTG
66 GCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC-ATTGATGCTTTG
*
2810228 GTGTCACAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAG
130 GTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAG
* *
2810293 ACAAACAAGAATTGTCATGCTAATCCCCATTATTTTAATGATTAGGCACCATAAACTTTGTCTTC
195 ACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTC
2810358 TCATAAAGATACA
260 TCATAAAGATACA
2810371 TGAGAAGTTT
Statistics
Matches: 3659, Mismatches: 368, Indels: 98
0.89 0.09 0.02
Matches are distributed among these distances:
468 7 0.00
469 414 0.11
470 2 0.00
471 1 0.00
473 111 0.03
474 385 0.11
475 188 0.05
476 2089 0.57
477 356 0.10
478 28 0.01
479 1 0.00
482 20 0.01
483 12 0.00
484 6 0.00
485 27 0.01
486 12 0.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (475 bp):
TTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCAT
GCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGG
TGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGA
CAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCT
CATAAAGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGCCACCATTTTTGTA
AAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGT
GATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCTTG
GAAATCTTTTCTTTGCCCTA
Done.