Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold28
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2815568
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.30
Warning! 166732 characters in sequence are not A, C, G, or T
File 7 of 16
Found at i:1093543 original size:13 final size:13
Alignment explanation
Indices: 1093525--1093551 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1093515 CCATGTATCG
1093525 ATGTATCGATACA
1 ATGTATCGATACA
1093538 ATGTATCGATACA
1 ATGTATCGATACA
1093551 A
1 A
1093552 GGAATGTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1097510 original size:21 final size:21
Alignment explanation
Indices: 1097468--1097510 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
1097458 TTTGTTTTTC
* *
1097468 TTAGCTAATTCATTATTTTCA
1 TTAGCTAATTCATTAATATCA
**
1097489 TTAGCTAATTTTTTAATATCA
1 TTAGCTAATTCATTAATATCA
1097510 T
1 T
1097511 CTTGCAATTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.12, G:0.05, T:0.53
Consensus pattern (21 bp):
TTAGCTAATTCATTAATATCA
Found at i:1099416 original size:13 final size:13
Alignment explanation
Indices: 1099398--1099422 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1099388 CATTTTATGG
1099398 TGTATCGATACAA
1 TGTATCGATACAA
1099411 TGTATCGATACA
1 TGTATCGATACA
1099423 TACTGTGTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1099438 original size:32 final size:33
Alignment explanation
Indices: 1099376--1099442 Score: 100
Period size: 33 Copynumber: 2.1 Consensus size: 33
1099366 GTTACAAGAA
**
1099376 AATGTATCGATACATTTTATGGTGTATCGATAC
1 AATGTATCGATACATACTATGGTGTATCGATAC
*
1099409 AATGTATCGATACATACTGT-GTGTATCGATAC
1 AATGTATCGATACATACTATGGTGTATCGATAC
1099441 AA
1 AA
1099443 GTTTAGCTAC
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
32 14 0.45
33 17 0.55
ACGTcount: A:0.33, C:0.13, G:0.18, T:0.36
Consensus pattern (33 bp):
AATGTATCGATACATACTATGGTGTATCGATAC
Found at i:1100961 original size:20 final size:20
Alignment explanation
Indices: 1100936--1100976 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
1100926 GTTACAAGCA
*
1100936 ATGTATCGATACAATTTATC
1 ATGTATCGATACAATGTATC
1100956 ATGTATCGATACAATGTATC
1 ATGTATCGATACAATGTATC
1100976 A
1 A
1100977 ATACAATGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.37
Consensus pattern (20 bp):
ATGTATCGATACAATGTATC
Found at i:1100971 original size:33 final size:33
Alignment explanation
Indices: 1100934--1101002 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 33
1100924 CCGTTACAAG
* * *
1100934 CAATGTATCGATACAATTTATCATGTATCGATA
1 CAATGTATCAATACAATGTACCATGTATCGATA
1100967 CAATGTATCAATACAATGTACCATGTATCGATA
1 CAATGTATCAATACAATGTACCATGTATCGATA
1101000 CAA
1 CAA
1101003 ACAGTGGTAG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.32
Consensus pattern (33 bp):
CAATGTATCAATACAATGTACCATGTATCGATA
Found at i:1100972 original size:13 final size:13
Alignment explanation
Indices: 1100934--1100986 Score: 55
Period size: 13 Copynumber: 4.5 Consensus size: 13
1100924 CCGTTACAAG
1100934 CAATGTATCGATA
1 CAATGTATCGATA
1100947 CAAT-T-T--AT-
1 CAATGTATCGATA
1100955 C-ATGTATCGATA
1 CAATGTATCGATA
*
1100967 CAATGTATCAATA
1 CAATGTATCGATA
1100980 CAATGTA
1 CAATGTA
1100987 CCATGTATCG
Statistics
Matches: 33, Mismatches: 1, Indels: 12
0.72 0.02 0.26
Matches are distributed among these distances:
7 2 0.06
8 2 0.06
9 3 0.09
11 3 0.09
12 2 0.06
13 21 0.64
ACGTcount: A:0.40, C:0.15, G:0.11, T:0.34
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:1101048 original size:18 final size:19
Alignment explanation
Indices: 1101025--1101066 Score: 68
Period size: 20 Copynumber: 2.2 Consensus size: 19
1101015 TAGCTACTGC
1101025 CAATTT-CATGTATCGATA
1 CAATTTCCATGTATCGATA
1101043 CAATTTTCCATGTATCGATA
1 CAA-TTTCCATGTATCGATA
1101063 CAAT
1 CAAT
1101067 GAATATGTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 3 0.14
19 4 0.18
20 15 0.68
ACGTcount: A:0.33, C:0.19, G:0.10, T:0.38
Consensus pattern (19 bp):
CAATTTCCATGTATCGATA
Found at i:1101090 original size:13 final size:13
Alignment explanation
Indices: 1101072--1101096 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1101062 ACAATGAATA
1101072 TGTATCGATACAT
1 TGTATCGATACAT
1101085 TGTATCGATACA
1 TGTATCGATACA
1101097 AAGCATAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1101094 original size:32 final size:33
Alignment explanation
Indices: 1101053--1101117 Score: 105
Period size: 32 Copynumber: 2.0 Consensus size: 33
1101043 CAATTTTCCA
*
1101053 TGTATCGATACAATGAAT-ATGTATCGATACAT
1 TGTATCGATACAAAGAATAATGTATCGATACAT
*
1101085 TGTATCGATACAAAGCATAATGTATCGATACAT
1 TGTATCGATACAAAGAATAATGTATCGATACAT
1101118 CTAGGTGTGT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 16 0.53
33 14 0.47
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.32
Consensus pattern (33 bp):
TGTATCGATACAAAGAATAATGTATCGATACAT
Found at i:1101616 original size:265 final size:265
Alignment explanation
Indices: 1101140--1101670 Score: 875
Period size: 265 Copynumber: 2.0 Consensus size: 265
1101130 CGATACATTC
* *
1101140 AAGGGTTTGGACCTTTGTAGCCTAAGTCAACCGTAATGTATCGATACAAATACTTATGTATCGAT
1 AAGGGTTTGGACCTTTGTAGCCTAAGTCAACCATAATGTATCGATACAAATACCTATGTATCGAT
* * *
1101205 ACTTTGAAGCATTTTTGCCGTAAAAACATTTGAATTAAGGTTTCAAAAACATTTGTTTATAACTC
66 ACTTTGAAGCATTTTTGACGTAAAAACATTTAAATTAAGGTTTCAAAAACATTTATTTATAACTC
* * **
1101270 TAAAACTTTCATTGATTGAAAATTACTTAGAAGTAGTTTTTAGAGTGTTTTTGAGTGAATAAAAC
131 TAAAACTTCCATTGATTGAAAACTACTTAGAACAAGTTTTTAGAGTGTTTTTGAGTGAATAAAAC
*
1101335 TTGTTTTCGATTTTTCAAACATTTTTCGGTTTTATTCAATCTTTGTTATATCAAAACCAAGATCC
196 TTGTTTACGATTTTTCAAACATTTTTCGGTTTTATTCAATCTTTGTTATATCAAAACCAAGATCC
1101400 TAACA
261 TAACA
* *
1101405 AAGGGTTTTGACCTTTGTAGCTTAAGTCAACCATAATGTATCGATACAAATACCTATGTATCGAT
1 AAGGGTTTGGACCTTTGTAGCCTAAGTCAACCATAATGTATCGATACAAATACCTATGTATCGAT
* * *
1101470 ACTTTGAAGTATTTTTTACTTAAAAACATTTAAATTAAGGTTTCAAAAACATTTATTTATAACTC
66 ACTTTGAAGCATTTTTGACGTAAAAACATTTAAATTAAGGTTTCAAAAACATTTATTTATAACTC
*
1101535 TAACACTTCCATTGATAT-AAAACTACTTAGAACAAGTTTTTAGAGTGTTTTTGAGTGAATAAAA
131 TAAAACTTCCATTGAT-TGAAAACTACTTAGAACAAGTTTTTAGAGTGTTTTTGAGTGAATAAAA
* * *
1101599 CTTGTTTACGGTTTTTCAAATATTTTTTGGTTTTATTCAATCTTTGTTATATCAAAACCAAGATC
195 CTTGTTTACGATTTTTCAAACATTTTTCGGTTTTATTCAATCTTTGTTATATCAAAACCAAGATC
1101664 CTAACA
260 CTAACA
1101670 A
1 A
1101671 TCTCCCTCTT
Statistics
Matches: 246, Mismatches: 19, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
265 245 1.00
266 1 0.00
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.40
Consensus pattern (265 bp):
AAGGGTTTGGACCTTTGTAGCCTAAGTCAACCATAATGTATCGATACAAATACCTATGTATCGAT
ACTTTGAAGCATTTTTGACGTAAAAACATTTAAATTAAGGTTTCAAAAACATTTATTTATAACTC
TAAAACTTCCATTGATTGAAAACTACTTAGAACAAGTTTTTAGAGTGTTTTTGAGTGAATAAAAC
TTGTTTACGATTTTTCAAACATTTTTCGGTTTTATTCAATCTTTGTTATATCAAAACCAAGATCC
TAACA
Found at i:1105381 original size:9 final size:9
Alignment explanation
Indices: 1105363--1105393 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
1105353 GAATTAGTTC
1105363 TTTT-CGAA
1 TTTTGCGAA
1105371 TTTTGCGAA
1 TTTTGCGAA
1105380 TTTTGCGAA
1 TTTTGCGAA
1105389 TTTTG
1 TTTTG
1105394 AAAGAATTGG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 4 0.18
9 18 0.82
ACGTcount: A:0.19, C:0.10, G:0.19, T:0.52
Consensus pattern (9 bp):
TTTTGCGAA
Found at i:1106176 original size:20 final size:19
Alignment explanation
Indices: 1106150--1106243 Score: 109
Period size: 20 Copynumber: 4.8 Consensus size: 19
1106140 ACTGCTAATT
1106150 TCATGTATCGATACAATTG-
1 TCATGTATCGATACAA-TGA
1106169 TCCATGTATCGATACAATGA
1 T-CATGTATCGATACAATGA
*
1106189 TCATGTATCGATACAAAGTA
1 TCATGTATCGATACAATG-A
* *
1106209 TAATGTATCGATACAAAGCA
1 TCATGTATCGATACAATG-A
*
1106229 TAATGTATCGATACA
1 TCATGTATCGATACA
1106244 TCTGGGTGTG
Statistics
Matches: 69, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
19 19 0.28
20 50 0.72
ACGTcount: A:0.38, C:0.16, G:0.15, T:0.31
Consensus pattern (19 bp):
TCATGTATCGATACAATGA
Found at i:1106200 original size:39 final size:40
Alignment explanation
Indices: 1106150--1106243 Score: 120
Period size: 39 Copynumber: 2.4 Consensus size: 40
1106140 ACTGCTAATT
* * *
1106150 TCATGTATCGATACAATTGT-CCATGTATCGATACAATG-A
1 TCATGTATCGATACAA-AGTACAATGTATCGATACAAAGCA
*
1106189 TCATGTATCGATACAAAGTATAATGTATCGATACAAAGCA
1 TCATGTATCGATACAAAGTACAATGTATCGATACAAAGCA
*
1106229 TAATGTATCGATACA
1 TCATGTATCGATACA
1106244 TCTGGGTGTG
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
38 2 0.04
39 31 0.65
40 15 0.31
ACGTcount: A:0.38, C:0.16, G:0.15, T:0.31
Consensus pattern (40 bp):
TCATGTATCGATACAAAGTACAATGTATCGATACAAAGCA
Found at i:1112901 original size:20 final size:19
Alignment explanation
Indices: 1112853--1112904 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
1112843 ATCAATACAA
*
1112853 TGTATTGATACATGCTCAT
1 TGTATTGATACATACTCAT
*
1112872 TGT-TTCGATACATATTCAAT
1 TGTATT-GATACATACTC-AT
1112892 TGTATTGATACAT
1 TGTATTGATACAT
1112905 GAAACTGGCA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
18 2 0.07
19 12 0.43
20 12 0.43
21 2 0.07
ACGTcount: A:0.29, C:0.13, G:0.13, T:0.44
Consensus pattern (19 bp):
TGTATTGATACATACTCAT
Found at i:1112959 original size:20 final size:20
Alignment explanation
Indices: 1112934--1112986 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
1112924 CTAAATGAAA
* *
1112934 TGTATCAATACATG-GGACAT
1 TGTATCGATACATGAAGA-AT
1112954 TGTATCGATACATGAAGAAT
1 TGTATCGATACATGAAGAAT
1112974 TGTATCGATACAT
1 TGTATCGATACAT
1112987 TATGCCCAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 28 0.93
21 2 0.07
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
TGTATCGATACATGAAGAAT
Found at i:1113537 original size:33 final size:33
Alignment explanation
Indices: 1113500--1113566 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
1113490 TTCAACGATT
1113500 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
1113533 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
1113566 T
1 T
1113567 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:1113538 original size:13 final size:13
Alignment explanation
Indices: 1113520--1113544 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1113510 CATAAAATGT
1113520 TGTATCGATACAA
1 TGTATCGATACAA
1113533 TGTATCGATACA
1 TGTATCGATACA
1113545 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1113628 original size:13 final size:13
Alignment explanation
Indices: 1113610--1113634 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1113600 ATTACTCACA
1113610 TGTATCGATACAT
1 TGTATCGATACAT
1113623 TGTATCGATACA
1 TGTATCGATACA
1113635 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1113771 original size:52 final size:52
Alignment explanation
Indices: 1113643--1113763 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
1113633 CACTGATCTT
*
1113643 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
1113695 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1113747 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
1113764 ATAAATTTTC
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:1117027 original size:21 final size:21
Alignment explanation
Indices: 1117002--1117044 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
1116992 CATGTCAGGA
1117002 GCATCTCGTCATGCAATGAAT
1 GCATCTCGTCATGCAATGAAT
1117023 GCATCTCGTCATGCAATGAAT
1 GCATCTCGTCATGCAATGAAT
1117044 G
1 G
1117045 TCATTTTGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (21 bp):
GCATCTCGTCATGCAATGAAT
Found at i:1120711 original size:1 final size:1
Alignment explanation
Indices: 1120705--1120736 Score: 55
Period size: 1 Copynumber: 32.0 Consensus size: 1
1120695 AAGTAAACAC
*
1120705 AAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1120737 GTGCAAAGGC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:0.97, C:0.00, G:0.03, T:0.00
Consensus pattern (1 bp):
A
Found at i:1122055 original size:30 final size:31
Alignment explanation
Indices: 1122019--1122100 Score: 112
Period size: 30 Copynumber: 2.7 Consensus size: 31
1122009 ATACCTTTTT
1122019 AAAGTCCACGACTCAGTGGCATTTTGTC-TC
1 AAAGTCCACGACTCAGTGGCATTTTGTCTTC
* *
1122049 AAAGTCCACGACTCAGTGGCATTTTTTCTTT
1 AAAGTCCACGACTCAGTGGCATTTTGTCTTC
* * *
1122080 AAAGCCCACAACTCCGTGGCA
1 AAAGTCCACGACTCAGTGGCA
1122101 CCTTGTTCCT
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
30 27 0.59
31 19 0.41
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (31 bp):
AAAGTCCACGACTCAGTGGCATTTTGTCTTC
Found at i:1122142 original size:61 final size:62
Alignment explanation
Indices: 1122077--1122595 Score: 423
Period size: 61 Copynumber: 8.0 Consensus size: 62
1122067 GCATTTTTTC
* * *
1122077 TTTAAAGCCCACAACTCCGTGGCACCTTGTTCCTTTT-AAGTCTACAACTCCGTGGCACCCT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCTTTTAAAGCCCACAACTCCGTGGCACCCT
* * * * * *
1122138 TTTAAAGCCCACAATTCTGTGGCACTTTTTTCATCTTT-AAGTCCACAACTCCGTGGCACCCG
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT-TTTAAAGCCCACAACTCCGTGGCACCCT
*
1122200 TTT-AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCTTTTAAAGCCCACAACTCCGTGGCACC-----
1122264 CT
61 CT
*
1122266 TTTAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-CCTTTT-AAAGCCCACAACTCCGTGGCACC--
1122331 TTTCT
61 ---CT
* * * * *
1122336 GTTTAAAGCCCACAGCTCCATGGCACCTTCTT-CTTTTCAAAGCCCACGACTCCGTGGCACTCTT
1 -TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCTTTT-AAAGCCCACAACTCCGTGGCAC-CCT
* * * *
1122400 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCT-AAGCCCATAACTCTGTGGCACTCTTT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTTTTCCTTTTAAAGCCCACAACTCCGTGGCAC-C--C
1122464 T
62 T
* * **
1122465 TCCTTCTAAGCCCACAACTCCGTGGCA-C-----CCTTTT-AAGCCCATAACTCCGTGGCACTTT
1 T--TT-AAAGCCCACAACTCCGTGGCACCTTTTTCCTTTTAAAGCCCACAACTCCGTGGCACCCT
* *
1122523 TTTCATCTTTAAGTCCACAACTCCGTGGCACCTTTTTTTTCTTTTAAAGCCCACAACTCCGTGGC
1 TTT-A-----AAGCCCACAACTCCGTGGCACC--TTTTTCCTTTTAAAGCCCACAACTCCGTGGC
*
1122588 ACTCT
58 ACCCT
1122593 TTT
1 TTT
1122596 TCTTTTTAAG
Statistics
Matches: 387, Mismatches: 37, Indels: 59
0.80 0.08 0.12
Matches are distributed among these distances:
56 3 0.01
58 3 0.01
60 3 0.01
61 120 0.31
62 29 0.07
63 43 0.11
64 6 0.02
65 7 0.02
66 5 0.01
67 22 0.06
68 53 0.14
69 11 0.03
70 60 0.16
71 22 0.06
ACGTcount: A:0.20, C:0.34, G:0.13, T:0.33
Consensus pattern (62 bp):
TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCTTTTAAAGCCCACAACTCCGTGGCACCCT
Found at i:1122211 original size:27 final size:27
Alignment explanation
Indices: 1122173--1122224 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
1122163 TTTTTTCATC
*
1122173 TTTAAGTCCACAACTCCGTGGCACCCG
1 TTTAAGCCCACAACTCCGTGGCACCCG
1122200 TTTAAGCCCACAACTCCGTGGCACC
1 TTTAAGCCCACAACTCCGTGGCACC
1122225 TTTTTCTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.23, C:0.38, G:0.17, T:0.21
Consensus pattern (27 bp):
TTTAAGCCCACAACTCCGTGGCACCCG
Found at i:1122246 original size:34 final size:34
Alignment explanation
Indices: 1122203--1122627 Score: 452
Period size: 34 Copynumber: 12.7 Consensus size: 34
1122193 GCACCCGTTT
1122203 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
1122237 AAGCCCACAACTCCGTGGCACCTTTTTC-TTTTA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
* *
1122270 AAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTCA
1 AAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTTTA
*
1122307 AAGCCCACAACTCCGTGGCACCTTTTTCTGTTTA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
* * * *
1122341 AAGCCCACAGCTCCATGGCACCTTCTTCTTTTCA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
*
1122375 AAGCCCACGACTCCGTGGCA-C----TCTTTTTA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
* *
1122404 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCT-
1 AAGCCCACAACTCCGTGGCAC-CTTTTTCTTTTTA
* * * *
1122438 AAGCCCATAACTCTGTGGCACTCTTTTTCCTTCT-
1 AAGCCCACAACTCCGTGGCAC-CTTTTTCTTTTTA
1122472 AAGCCCACAACTCCGTGGCACC-----C-TTTT-
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
* * *
1122499 AAGCCCATAACTCCGTGGCACTTTTTTCATCTTT-
1 AAGCCCACAACTCCGTGGCACCTTTTTC-TTTTTA
* *
1122533 AAGTCCACAACTCCGTGGCACCTTTTTTTTCTTTTA
1 AAGCCCACAACTCCGTGGCACC-TTTTTCT-TTTTA
1122569 AAGCCCACAACTCCGTGGCACTCTTTTTCTTTTT-
1 AAGCCCACAACTCCGTGGCAC-CTTTTTCTTTTTA
* * *
1122603 AAGTCCACAACTTCGTGGCATCTTT
1 AAGCCCACAACTCCGTGGCACCTTT
1122628 CACCCTTTCT
Statistics
Matches: 335, Mismatches: 35, Indels: 43
0.81 0.08 0.10
Matches are distributed among these distances:
27 23 0.07
28 1 0.00
29 26 0.08
31 1 0.00
32 1 0.00
33 31 0.09
34 177 0.53
35 17 0.05
36 33 0.10
37 25 0.07
ACGTcount: A:0.20, C:0.33, G:0.13, T:0.34
Consensus pattern (34 bp):
AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
Found at i:1122409 original size:29 final size:31
Alignment explanation
Indices: 1122077--1122622 Score: 332
Period size: 34 Copynumber: 16.8 Consensus size: 31
1122067 GCATTTTTTC
*
1122077 TTTAAAGCCCACAACTCCGTGGCACCTTGTT
1 TTTAAAGCCCACAACTCCGTGGCACCTTCTT
* * *
1122108 CCTTTTAAGTCTACAACTCCGTGGCACC--C-T
1 --TTTAAAGCCCACAACTCCGTGGCACCTTCTT
* * * *
1122138 TTTAAAGCCCACAATTCTGTGGCACTTTTTT
1 TTTAAAGCCCACAACTCCGTGGCACCTTCTT
* * *
1122169 CATCTTTAAGTCCACAACTCCGTGGCACC--C-G
1 --T-TTAAAGCCCACAACTCCGTGGCACCTTCTT
1122200 TTT-AAGCCCACAACTCCGTGGCACCTTTTTCTT
1 TTTAAAGCCCACAACTCCGTGGCACC---TTCTT
*
1122233 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCT
1 TTTAAAGCCCACAACTCCGTGGCACC-TTCT-T
*
1122266 TTTAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTT
1 TTTAAAGCCCACAACTCCGTGGCAC-C---TT--CTT
* *
1122303 TTCAAAGCCCACAACTCCGTGGCACCTTTTTCTG
1 TTTAAAGCCCACAACTCCGTGGCACC---TTCTT
* *
1122337 TTTAAAGCCCACAGCTCCATGGCACCTTCTTCT
1 TTTAAAGCCCACAACTCCGTGGCACCTTC-T-T
*
1122370 TTTCAAAGCCCACGACTCCGTGGCA-C-TCTT
1 TTT-AAAGCCCACAACTCCGTGGCACCTTCTT
1122400 TTTAAAGCCCACAACTCCGTGGCACTCTT-TT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTCTT
* * *
1122431 TCCTTCTAAGCCCATAACTCTGTGGCACTCTT-TT
1 T--TT-AAAGCCCACAACTCCGTGGCAC-CTTCTT
*
1122465 TCCTTCTAAGCCCACAACTCCGTGGCACC--C-T
1 T--TT-AAAGCCCACAACTCCGTGGCACCTTCTT
* * *
1122496 TTT-AAGCCCATAACTCCGTGGCACTTTTTT
1 TTTAAAGCCCACAACTCCGTGGCACCTTCTT
* * *
1122526 CATCTTTAAGTCCACAACTCCGTGGCACCTTTTTTTTCT
1 --T-TTAAAGCCCACAACTCCGTGGCACC----TTCT-T
1122565 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTT
1 TTTAAAGCCCACAACTCCGTGGCAC-C---TTCTT
* *
1122600 TTT-AAGTCCACAACTTCGTGGCA
1 TTTAAAGCCCACAACTCCGTGGCA
1122623 TCTTTCACCC
Statistics
Matches: 421, Mismatches: 50, Indels: 83
0.76 0.09 0.15
Matches are distributed among these distances:
27 41 0.10
28 22 0.05
29 23 0.05
30 6 0.01
31 11 0.03
32 10 0.02
33 61 0.14
34 174 0.41
35 4 0.01
36 37 0.09
37 26 0.06
38 5 0.01
39 1 0.00
ACGTcount: A:0.21, C:0.33, G:0.13, T:0.33
Consensus pattern (31 bp):
TTTAAAGCCCACAACTCCGTGGCACCTTCTT
Found at i:1122442 original size:97 final size:95
Alignment explanation
Indices: 1122049--1122596 Score: 505
Period size: 95 Copynumber: 5.7 Consensus size: 95
1122039 ATTTTGTCTC
* * * * *
1122049 AAAGTCCACGACTCAGTGGCA-TTTTTTC-TTTAAAGCCCACAACTCCGTGGCACCTTGTTCCTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCA-C----TCTTT
* *
1122112 TTAAGTCTACAACTCCGTGGCA-C-----CCTTTT
61 TTAAGCCCACAACTCCGTGGCACCTTTTTCCTTTT
* * * * **
1122141 AAAGCCCACAATTCTGTGGCACTTTTTTCATCTTT-AAGTCCACAACTCCGTGGCAC-CCGTTTA
1 AAAGCCCACAACTCCGTGGCACCTTTTTC-T-TTTAAAGCCCACAACTCCGTGGCACTCTTTTTA
*
1122204 AGCCCACAACTCCGTGGCACCTTTTTCTTTTT
64 AGCCCACAACTCCGTGGCACCTTTTTCCTTTT
*
1122236 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCTGTGGCACTCTTTTTCCC
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTC----T---
1122301 TTTTCAAAGCCCACAACTCCGTGGCACCTTTTT-CTGTTT
59 TTTT--AAGCCCACAACTCCGTGGCACCTTTTTCCT-TTT
* * * *
1122340 AAAGCCCACAGCTCCATGGCACCTTCTTCTTTTCAAAGCCCACGACTCCGTGGCACTCTTTTTAA
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTT-AAAGCCCACAACTCCGTGGCACTCTTTTT-A
*
1122405 AGCCCACAACTCCGTGGCACTCTTTTTCCTTCT
64 AGCCCACAACTCCGTGGCAC-CTTTTTCCTTTT
* * * *
1122438 -AAGCCCATAACTCTGTGGCACTCTTTTTCCTTCT-AAGCCCACAACTCCGTGGCAC-CCTTTTA
1 AAAGCCCACAACTCCGTGGCAC-CTTTTT-CTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTA
* * *
1122500 AGCCCATAACTCCGTGGCACTTTTTTCATCTTT
64 AGCCCACAACTCCGTGGCACCTTTTTCCT-TTT
*
1122533 -AAGTCCACAACTCCGTGGCACCTTTTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
1 AAAGCCCACAACTCCGTGGCACC---TTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
1122597 CTTTTTAAGT
Statistics
Matches: 383, Mismatches: 40, Indels: 60
0.79 0.08 0.12
Matches are distributed among these distances:
89 23 0.06
90 1 0.00
92 17 0.04
93 10 0.03
94 29 0.08
95 91 0.24
96 12 0.03
97 85 0.22
98 22 0.06
99 6 0.02
101 1 0.00
102 3 0.01
103 1 0.00
104 60 0.16
105 22 0.06
ACGTcount: A:0.21, C:0.33, G:0.13, T:0.33
Consensus pattern (95 bp):
AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTAAG
CCCACAACTCCGTGGCACCTTTTTCCTTTT
Found at i:1122525 original size:27 final size:27
Alignment explanation
Indices: 1122466--1122519 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
1122456 CACTCTTTTT
*
1122466 CCTTCTAAGCCCACAACTCCGTGGCAC
1 CCTTTTAAGCCCACAACTCCGTGGCAC
*
1122493 CCTTTTAAGCCCATAACTCCGTGGCAC
1 CCTTTTAAGCCCACAACTCCGTGGCAC
1122520 TTTTTTCATC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.22, C:0.41, G:0.15, T:0.22
Consensus pattern (27 bp):
CCTTTTAAGCCCACAACTCCGTGGCAC
Found at i:1122562 original size:131 final size:131
Alignment explanation
Indices: 1122054--1122622 Score: 433
Period size: 131 Copynumber: 4.4 Consensus size: 131
1122044 GTCTCAAAGT
* * *
1122054 CCACGACTCAGTGGCA-T-TTTTT-CTTTAAAGCCCACAACTCCGTGGCACCTTGTTCCTTTT-A
1 CCACAACTCCGTGGCACTCTTTTTCCTTTTAAGCCCACAACTCCGTGGCACC----T-CTTTTAA
* * ** * * *
1122115 AGTCTACAACTCCGTGGCACCCTTTT-A----AAGCCCACAATTCTGTGGCACTTTTTTCAT-CT
61 AGCCCACAACTCCGTGGCACTTTTTTCATTTTAAGCCCACAACTCCGTGGCACTTTTTT-TTCCT
*
1122174 T-TAAGT
125 TCTAAGC
*
1122180 CCACAACTCCGTGGCA--C-----CCGTTTAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAA
1 CCACAACTCCGTGGCACTCTTTTTCCTTTTAAGCCCACAACTCCGTGGCACC----TC-TTTTAA
* * * *
1122238 AGCCCACAACTCCGTGGCACCTTTTTC-TTTTAAAGCCCACAACTCTGTGGCACTCTTTTTCCCT
61 AGCCCACAACTCCGTGGCACTTTTTTCATTTT-AAGCCCACAACTCCGTGGCACTTTTTTTTCC-
*
1122302 TTTCAAAGC
124 -TTCTAAGC
* *
1122311 CCACAACTCCGTGGCAC-CTTTTT-CTGTTTAAAGCCCACAGCTCCATGGCACCTTCTTCTTTTC
1 CCACAACTCCGTGGCACTCTTTTTCCT-TTT-AAGCCCACAACTCCGTGGCA-C--C-TCTTTT-
* *
1122374 AAAGCCCACGACTCCGTGGCACTCTTTTT-A----AAGCCCACAACTCCGTGGCAC-TCTTTTTC
59 AAAGCCCACAACTCCGTGGCACT-TTTTTCATTTTAAGCCCACAACTCCGTGGCACTTTTTTTTC
1122433 CTTCTAAGC
123 CTTCTAAGC
* * *
1122442 CCATAACTCTGTGGCACTCTTTTTCCTTCTAAGCCCACAACTCCGTGGCACC-CTTTT-AAGCCC
1 CCACAACTCCGTGGCACTCTTTTTCCTTTTAAGCCCACAACTCCGTGGCACCTCTTTTAAAGCCC
* * *
1122505 ATAACTCCGTGGCACTTTTTTCATCTTTAAGTCCACAACTCCGTGGCACCTTTTTTTT-CTTTTA
66 ACAACTCCGTGGCACTTTTTTCAT-TTTAAGCCCACAACTCCGTGGCA-CTTTTTTTTCCTTCT-
1122569 AAGC
128 AAGC
* * *
1122573 CCACAACTCCGTGGCACTCTTTTTCTTTTTAAGTCCACAACTTCGTGGCA
1 CCACAACTCCGTGGCACTCTTTTTCCTTTTAAGCCCACAACTCCGTGGCA
1122623 TCTTTCACCC
Statistics
Matches: 364, Mismatches: 40, Indels: 73
0.76 0.08 0.15
Matches are distributed among these distances:
121 1 0.00
122 33 0.09
123 29 0.08
124 21 0.06
126 19 0.05
128 27 0.07
129 19 0.05
130 8 0.02
131 113 0.31
132 9 0.02
133 8 0.02
134 20 0.05
136 1 0.00
137 7 0.02
138 42 0.12
139 6 0.02
141 1 0.00
ACGTcount: A:0.20, C:0.33, G:0.13, T:0.33
Consensus pattern (131 bp):
CCACAACTCCGTGGCACTCTTTTTCCTTTTAAGCCCACAACTCCGTGGCACCTCTTTTAAAGCCC
ACAACTCCGTGGCACTTTTTTCATTTTAAGCCCACAACTCCGTGGCACTTTTTTTTCCTTCTAAG
C
Found at i:1122677 original size:33 final size:33
Alignment explanation
Indices: 1122638--1122766 Score: 174
Period size: 33 Copynumber: 3.9 Consensus size: 33
1122628 CACCCTTTCT
*
1122638 AAAGCCCACACAAGTCGGTGGCAAACCTTCTCT
1 AAAGCCCACACAAGTCGGTGGCAAACCTTCTCC
* *
1122671 AAAGCCCACACAAGTCGATGGCAACCCTTC-CC
1 AAAGCCCACACAAGTCGGTGGCAAACCTTCTCC
*
1122703 AAAGCCCACACAAGGT-GGTGGC-AACCATTTTCC
1 AAAGCCCACACAA-GTCGGTGGCAAACC-TTCTCC
*
1122736 AAAGCCCACACAAGTCGGTGGCAACCCTTCT
1 AAAGCCCACACAAGTCGGTGGCAAACCTTCT
1122767 AAGCCCAATA
Statistics
Matches: 83, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
31 3 0.04
32 23 0.28
33 54 0.65
34 3 0.04
ACGTcount: A:0.30, C:0.35, G:0.19, T:0.16
Consensus pattern (33 bp):
AAAGCCCACACAAGTCGGTGGCAAACCTTCTCC
Found at i:1122740 original size:65 final size:65
Alignment explanation
Indices: 1122629--1122765 Score: 197
Period size: 65 Copynumber: 2.1 Consensus size: 65
1122619 GGCATCTTTC
* * *
1122629 ACCCTTTCTAAAGCCCACACAAGTCGGTGGCAAACCTTCTCTAAAGCCCACACAAGTCGATGGCA
1 ACCCTTCCCAAAGCCCACACAAGTCGGTGGCAAACCTTCTCCAAAGCCCACACAAGTCGATGGCA
* *
1122694 ACCCTTCCCAAAGCCCACACAAGGT-GGTGGC-AACCATTTTCCAAAGCCCACACAAGTCGGTGG
1 ACCCTTCCCAAAGCCCACACAA-GTCGGTGGCAAACC-TTCTCCAAAGCCCACACAAGTCGATGG
1122757 CA
64 CA
1122759 ACCCTTC
1 ACCCTTC
1122766 TAAGCCCAAT
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
64 4 0.06
65 59 0.91
66 2 0.03
ACGTcount: A:0.29, C:0.36, G:0.18, T:0.18
Consensus pattern (65 bp):
ACCCTTCCCAAAGCCCACACAAGTCGGTGGCAAACCTTCTCCAAAGCCCACACAAGTCGATGGCA
Found at i:1122879 original size:48 final size:49
Alignment explanation
Indices: 1122766--1123090 Score: 468
Period size: 48 Copynumber: 6.7 Consensus size: 49
1122756 GCAACCCTTC
* * * *
1122766 TAAGCCCAATATAGCTGGCCCTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
1122815 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
1122863 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* *
1122912 TAAATCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TCACCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
1122960 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
1123003 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATCGGCACCTTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC--TT-CATCTT
*
1123055 TAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTG
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTG
1123091 ACATCCTTTT
Statistics
Matches: 250, Mismatches: 16, Indels: 17
0.88 0.06 0.06
Matches are distributed among these distances:
43 39 0.16
45 1 0.00
48 91 0.36
49 83 0.33
50 1 0.00
52 35 0.14
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.30
Consensus pattern (49 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
Found at i:1122937 original size:97 final size:97
Alignment explanation
Indices: 1122766--1123090 Score: 473
Period size: 97 Copynumber: 3.4 Consensus size: 97
1122756 GCAACCCTTC
* * * *
1122766 TAAGCCCAATATAGCTGGCCCTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
1122831 GGCCTTGAATCAGCACATTGGCACCTCATCTT
66 GGCCTTGAATCAGCACATTGGCACCTCATCTT
* *
1122863 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAATCCAATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
*
1122928 GGCCTTGAATCAGCACATTGGCACCTCACCTT
66 GGCCTTGAATCAGCACATTGGCACCTCATCTT
*
1122960 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCCAATATAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
* *
1123019 GGCCTTGAATCAGCATATCGGCACCTTTTCCATCTT
66 GGCCTTGAATCAGCACATTGGCACC---T-CATCTT
*
1123055 TAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTG
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTG
1123091 ACATCCTTTT
Statistics
Matches: 210, Mismatches: 14, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
91 40 0.19
93 1 0.00
94 1 0.00
95 40 0.19
97 128 0.61
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.30
Consensus pattern (97 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
GGCCTTGAATCAGCACATTGGCACCTCATCTT
Found at i:1123018 original size:43 final size:43
Alignment explanation
Indices: 1122909--1123046 Score: 195
Period size: 43 Copynumber: 3.1 Consensus size: 43
1122899 GCACCTTCAT
*
1122909 CTTTAAATCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG-----CAC
1122957 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
* * *
1123000 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATCGGCAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1123043 CTTT
1 CTTT
1123047 TCCATCTTTA
Statistics
Matches: 86, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
43 47 0.55
48 39 0.45
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (43 bp):
CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
Found at i:1123136 original size:56 final size:52
Alignment explanation
Indices: 1123000--1123138 Score: 161
Period size: 52 Copynumber: 2.6 Consensus size: 52
1122990 ACATTGGCAC
* *
1123000 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATCGGCACCTTTTCCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATCGACACCTTTTCCAT
* * *
1123052 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCATCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATCGACA-CC-TTTTC--CAT
* * * *
1123108 CTTTAAGCCCAATATCGTTGGCCGTGAATCA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCA
1123139 ACATATTGGC
Statistics
Matches: 72, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
52 37 0.51
53 2 0.03
54 5 0.07
56 28 0.39
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.34
Consensus pattern (52 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATCGACACCTTTTCCAT
Found at i:1124005 original size:33 final size:33
Alignment explanation
Indices: 1123968--1124034 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
1123958 TTCAACGATT
1123968 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
1124001 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
1124034 T
1 T
1124035 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:1124006 original size:13 final size:13
Alignment explanation
Indices: 1123988--1124012 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1123978 CATAAAATGT
1123988 TGTATCGATACAA
1 TGTATCGATACAA
1124001 TGTATCGATACA
1 TGTATCGATACA
1124013 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1124097 original size:13 final size:13
Alignment explanation
Indices: 1124079--1124103 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1124069 ATTACTCACA
1124079 TGTATCGATACAT
1 TGTATCGATACAT
1124092 TGTATCGATACA
1 TGTATCGATACA
1124104 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1124240 original size:52 final size:52
Alignment explanation
Indices: 1124112--1124232 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
1124102 CACTGATCTT
*
1124112 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
1124164 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1124216 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
1124233 ATAAATTTTC
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:1138696 original size:20 final size:20
Alignment explanation
Indices: 1138671--1138708 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
1138661 CTGCCAAGGA
1138671 AATGTATTGACACATTATTC
1 AATGTATTGACACATTATTC
*
1138691 AATGTATTGATACATTAT
1 AATGTATTGACACATTAT
1138709 ATCGATACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.37, C:0.11, G:0.11, T:0.42
Consensus pattern (20 bp):
AATGTATTGACACATTATTC
Found at i:1152632 original size:10 final size:11
Alignment explanation
Indices: 1152615--1152645 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
1152605 GCATCCTTCG
1152615 CAAAAAAAAAA
1 CAAAAAAAAAA
1152626 CAAAAAAAAAA
1 CAAAAAAAAAA
*
1152637 CAACAAAAA
1 CAAAAAAAA
1152646 GGGTCCAGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00
Consensus pattern (11 bp):
CAAAAAAAAAA
Found at i:1152635 original size:14 final size:14
Alignment explanation
Indices: 1152616--1152645 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
1152606 CATCCTTCGC
1152616 AAAAAAAAAACAAA
1 AAAAAAAAAACAAA
*
1152630 AAAAAAACAACAAA
1 AAAAAAAAAACAAA
1152644 AA
1 AA
1152646 GGGTCCAGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAACAAA
Found at i:1154117 original size:30 final size:30
Alignment explanation
Indices: 1154083--1154169 Score: 115
Period size: 28 Copynumber: 3.0 Consensus size: 30
1154073 CTCACCTTCC
* *
1154083 AAAGCTCACAAGTCAGTGGCATCTTTTTCA
1 AAAGCCCACAAGTCAGTGGCAACTTTTTCA
*
1154113 AAAGCCCACAAGTCAGTGGCAAC--CTTCA
1 AAAGCCCACAAGTCAGTGGCAACTTTTTCA
* *
1154141 AAAGCCCACAAGTTAGTGGCACCTTTTTC
1 AAAGCCCACAAGTCAGTGGCAACTTTTTC
1154170 TTTTCAAAGT
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
28 25 0.51
30 24 0.49
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (30 bp):
AAAGCCCACAAGTCAGTGGCAACTTTTTCA
Found at i:1154220 original size:33 final size:33
Alignment explanation
Indices: 1154156--1154651 Score: 451
Period size: 34 Copynumber: 15.3 Consensus size: 33
1154146 CCACAAGTTA
* *
1154156 GTGGCACCTTTTT-CTTTTCAAAGTCCTCAACTCC
1 GTGGCATCTTTTTCCTTTT--AAGTCCACAACTCC
*
1154190 GTGTCATCTTTTTCCTTTTAAGTCCACAACTCTC
1 GTGGCATCTTTTTCCTTTTAAGTCCACAACTC-C
* * *
1154224 -TGGCACCTTTTTCTTTTTAAAGCCCACAACTCC
1 GTGGCATCTTTTTCCTTTT-AAGTCCACAACTCC
*
1154257 GTGGCACTCTTTTTCCTTTTAAGTCCACAACTTC
1 GTGGCA-TCTTTTTCCTTTTAAGTCCACAACTCC
* **
1154291 ATGGCACTCTTTTTCCTTTTAAGTCCACAACTAT
1 GTGGCA-TCTTTTTCCTTTTAAGTCCACAACTCC
* *
1154325 GTGGCATCTTTCTCCTTTTAAGTTCACAACTCC
1 GTGGCATCTTTTTCCTTTTAAGTCCACAACTCC
* *
1154358 GTGGCA-C-----CTTTTTAAGTCCACAACTTC
1 GTGGCATCTTTTTCCTTTTAAGTCCACAACTCC
1154385 GTGGCATCTTTTTCCTTTTAAGTCCACAACTCC
1 GTGGCATCTTTTTCCTTTTAAGTCCACAACTCC
* * *
1154418 GTGGCATCTTTTTCTTTTTAAAGCCCACAACTCT
1 GTGGCATCTTTTTCCTTTT-AAGTCCACAACTCC
* *
1154452 GTGGCA-C-----CCTTTTAAGTCTACAACCCC
1 GTGGCATCTTTTTCCTTTTAAGTCCACAACTCC
* ** *
1154479 GTGGCATCTCTTTCCTTTTAAGTCCATGACTTC
1 GTGGCATCTTTTTCCTTTTAAGTCCACAACTCC
* *
1154512 GTGGCACTTTTTTTCCTTTTAAGTCCACAACTCT
1 GTGGCA-TCTTTTTCCTTTTAAGTCCACAACTCC
1154546 GTGGCA-C-----CCTTTTAAGTCCACAACTCC
1 GTGGCATCTTTTTCCTTTTAAGTCCACAACTCC
* * *
1154573 GTGGCACCTTTTTCCCTTTTAAGCCCACACCTCC
1 GTGGCATCTTTTT-CCTTTTAAGTCCACAACTCC
* *
1154607 ATGGCATCCTTTTTTCC-TATAAGTCCACAAC-CTC
1 GTGGCAT-C-TTTTTCCTTTTAAGTCCACAACTC-C
*
1154641 GTGGCACCTTT
1 GTGGCATCTTT
1154652 AAGTCCAATA
Statistics
Matches: 379, Mismatches: 54, Indels: 60
0.77 0.11 0.12
Matches are distributed among these distances:
27 64 0.17
28 8 0.02
32 4 0.01
33 117 0.31
34 162 0.43
35 19 0.05
36 5 0.01
ACGTcount: A:0.19, C:0.31, G:0.12, T:0.38
Consensus pattern (33 bp):
GTGGCATCTTTTTCCTTTTAAGTCCACAACTCC
Found at i:1154379 original size:27 final size:28
Alignment explanation
Indices: 1154304--1154579 Score: 162
Period size: 33 Copynumber: 9.0 Consensus size: 28
1154294 GCACTCTTTT
**
1154304 TCCTTTTAAGTCCACAACTATGTGGCATCTTTC
1 TCCTTTTAAGTCCACAACTCCGTGGCA-----C
*
1154337 TCCTTTTAAGTTCACAACTCCGTGGCAC
1 TCCTTTTAAGTCCACAACTCCGTGGCAC
* *
1154365 -CTTTTTAAGTCCACAACTTCGTGGCATC
1 TCCTTTTAAGTCCACAACTCCGTGGCA-C
1154393 TTTTTCCTTTTAAGTCCACAACTCCGTGGCATC
1 ----TCCTTTTAAGTCCACAACTCCGTGGCA-C
* * *
1154426 TTTTTCTTTTTAAAGCCCACAACTCTGTGGCAC
1 ----TCCTTTT-AAGTCCACAACTCCGTGGCAC
* *
1154459 -CCTTTTAAGTCTACAACCCCGTGGCATCTC
1 TCCTTTTAAGTCCACAACTCCGTGGCA---C
** *
1154489 TTTCCTTTTAAGTCCATGACTTCGTGGCAC
1 --TCCTTTTAAGTCCACAACTCCGTGGCAC
*
1154519 TTTTTTTCCTTTTAAGTCCACAACTCTGTGGCAC
1 ------TCCTTTTAAGTCCACAACTCCGTGGCAC
1154553 -CCTTTTAAGTCCACAACTCCGTGGCAC
1 TCCTTTTAAGTCCACAACTCCGTGGCAC
1154580 CTTTTTCCCT
Statistics
Matches: 200, Mismatches: 26, Indels: 40
0.75 0.10 0.15
Matches are distributed among these distances:
27 65 0.32
28 7 0.04
30 2 0.01
33 82 0.41
34 44 0.22
ACGTcount: A:0.20, C:0.30, G:0.13, T:0.37
Consensus pattern (28 bp):
TCCTTTTAAGTCCACAACTCCGTGGCAC
Found at i:1154401 original size:60 final size:61
Alignment explanation
Indices: 1154176--1154620 Score: 336
Period size: 67 Copynumber: 7.0 Consensus size: 61
1154166 TTTCTTTTCA
* * * *
1154176 AAGTCCTCAACTCCGTGTCATCTTTTTCCTTTTAAGTCCACAACTCTC-TGGCACCTTTTTCTTT
1 AAGTCCACAACTTCGTGGCATCTTTTTCCTTTTAAGTCCACAACTC-CGTGGCA-----TCCTTT
1154240 TT
60 TT
* * * * *
1154242 AAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTTCATGGCACTCTTTTTCC
1 -AAGTCCACAACTTCGTGGCA-TCTTTTTCCTTTTAAGTCCACAACTCCGTGGCA-TC-----CT
1154307 TTTT
58 TTTT
* *
1154311 AAGTCCACAACTAT-GTGGCATCTTTCTCCTTTTAAGTTCACAACTCCGTGGCA-CCTTTTT
1 AAGTCCACAACT-TCGTGGCATCTTTTTCCTTTTAAGTCCACAACTCCGTGGCATCCTTTTT
1154371 AAGTCCACAACTTCGTGGCATCTTTTTCCTTTTAAGTCCACAACTCCGTGGCATCTTTTTCTTTT
1 AAGTCCACAACTTCGTGGCATCTTTTTCCTTTTAAGTCCACAACTCCGTGGCATC-----CTTTT
1154436 T
61 T
* * *
1154437 AAAGCCCACAAC-TCTGTGGCA-C-----CCTTTTAAGTCTACAACCCCGTGGCATCTCTTTCCT
1 -AAGTCCACAACTTC-GTGGCATCTTTTTCCTTTTAAGTCCACAACTCCGTGGCATC-C--T--T
1154495 TTT
59 TTT
** * * *
1154498 AAGTCCATGACTTCGTGGCACTTTTTTTCCTTTTAAGTCCACAACTCTGTGGCA-CCCTTTT
1 AAGTCCACAACTTCGTGGCA-TCTTTTTCCTTTTAAGTCCACAACTCCGTGGCATCCTTTTT
* * * * *
1154559 AAGTCCACAACTCCGTGGCACCTTTTTCCCTTTTAAGCCCACACCTCCATGGCATCCTTTTT
1 AAGTCCACAACTTCGTGGCATCTTTTT-CCTTTTAAGTCCACAACTCCGTGGCATCCTTTTT
1154621 TCCTATAAGT
Statistics
Matches: 310, Mismatches: 37, Indels: 67
0.75 0.09 0.16
Matches are distributed among these distances:
57 2 0.01
59 2 0.01
60 73 0.24
61 76 0.25
62 6 0.02
64 1 0.00
65 2 0.01
66 10 0.03
67 86 0.28
68 47 0.15
69 5 0.02
ACGTcount: A:0.19, C:0.31, G:0.12, T:0.38
Consensus pattern (61 bp):
AAGTCCACAACTTCGTGGCATCTTTTTCCTTTTAAGTCCACAACTCCGTGGCATCCTTTTT
Found at i:1154456 original size:94 final size:93
Alignment explanation
Indices: 1154176--1154658 Score: 526
Period size: 94 Copynumber: 5.1 Consensus size: 93
1154166 TTTCTTTTCA
* * * *
1154176 AAGTCCTCAACTCCGTGTCATCTTTTTCCTTTTAAGTCCACAACTCTC-TGGCACCTTTTTCTTT
1 AAGTCCACAACTCCGTGGCATCTTTTTCCTTTTAAGTCCACAACTC-CGTGGCATCTTTTTCCTT
* *
1154240 TTAAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTT
65 TT-AAGTCCACAACTCTGTGGCA--C-----CCTTTT
* * ** *
1154277 AAGTCCACAACTTCATGGCACTCTTTTTCCTTTTAAGTCCACAACTATGTGGCATCTTTCTCCTT
1 AAGTCCACAACTCCGTGGCA-TCTTTTTCCTTTTAAGTCCACAACTCCGTGGCATCTTTTTCCTT
* * *
1154342 TTAAGTTCACAACTCCGTGGCACCTTTTT
65 TTAAGTCCACAACTCTGTGGCACCCTTTT
* *
1154371 AAGTCCACAACTTCGTGGCATCTTTTTCCTTTTAAGTCCACAACTCCGTGGCATCTTTTTCTTTT
1 AAGTCCACAACTCCGTGGCATCTTTTTCCTTTTAAGTCCACAACTCCGTGGCATCTTTTTCCTTT
*
1154436 TAAAGCCCACAACTCTGTGGCACCCTTTT
66 T-AAGTCCACAACTCTGTGGCACCCTTTT
* * * ** * *
1154465 AAGTCTACAACCCCGTGGCATCTCTTTCCTTTTAAGTCCATGACTTCGTGGCACTTTTTTTCCTT
1 AAGTCCACAACTCCGTGGCATCTTTTTCCTTTTAAGTCCACAACTCCGTGGCA-TCTTTTTCCTT
1154530 TTAAGTCCACAACTCTGTGGCACCCTTTT
65 TTAAGTCCACAACTCTGTGGCACCCTTTT
* * * *
1154559 AAGTCCACAACTCCGTGGCACCTTTTTCCCTTTTAAGCCCACACCTCCATGGCATCCTTTTTTCC
1 AAGTCCACAACTCCGTGGCATCTTTTT-CCTTTTAAGTCCACAACTCCGTGGCAT-C-TTTTTCC
*
1154624 -TATAAGTCCACAAC-CTCGTGGCA-CC-TTT
63 TTTTAAGTCCACAACTCT-GTGGCACCCTTTT
1154652 AAGTCCA
1 AAGTCCA
1154659 ATATAGCTGG
Statistics
Matches: 331, Mismatches: 43, Indels: 24
0.83 0.11 0.06
Matches are distributed among these distances:
93 52 0.16
94 147 0.44
95 50 0.15
96 7 0.02
99 1 0.00
101 34 0.10
102 40 0.12
ACGTcount: A:0.20, C:0.31, G:0.12, T:0.37
Consensus pattern (93 bp):
AAGTCCACAACTCCGTGGCATCTTTTTCCTTTTAAGTCCACAACTCCGTGGCATCTTTTTCCTTT
TAAGTCCACAACTCTGTGGCACCCTTTT
Found at i:1154557 original size:61 final size:61
Alignment explanation
Indices: 1154492--1154619 Score: 166
Period size: 61 Copynumber: 2.1 Consensus size: 61
1154482 GCATCTCTTT
** * * * * **
1154492 CCTTTTAAGTCCATGACTTCGTGGCACTTTTTTTCCTTTTAAGTCCACAACTCTGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCCCTTTTAAGCCCACAACTCCATGGCAC
* *
1154553 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCCCTTTTAAGCCCACACCTCCATGGCAT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCCCTTTTAAGCCCACAACTCCATGGCAC
1154614 CCTTTT
1 CCTTTT
1154620 TTCCTATAAG
Statistics
Matches: 57, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
61 57 1.00
ACGTcount: A:0.18, C:0.33, G:0.12, T:0.37
Consensus pattern (61 bp):
CCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCCCTTTTAAGCCCACAACTCCATGGCAC
Found at i:1154580 original size:27 final size:27
Alignment explanation
Indices: 1154526--1154585 Score: 102
Period size: 27 Copynumber: 2.2 Consensus size: 27
1154516 CACTTTTTTT
*
1154526 CCTTTTAAGTCCACAACTCTGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
1154553 CCTTTTAAGTCCACAACTCCGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
*
1154580 CTTTTT
1 CCTTTT
1154586 CCCTTTTAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.20, C:0.33, G:0.13, T:0.33
Consensus pattern (27 bp):
CCTTTTAAGTCCACAACTCCGTGGCAC
Found at i:1154721 original size:49 final size:48
Alignment explanation
Indices: 1154648--1155221 Score: 362
Period size: 52 Copynumber: 12.0 Consensus size: 48
1154638 CTCGTGGCAC
* * * * *
1154648 CTTTAAGTCCAATATAGCTGGCCTTGAATCAACATATTGGCAACTTTAT
1 CTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGC-ACCTTAT
* *
1154697 CTTTAAGACCAATGTCGCTAGCCTTGAATCAGCACATTGGCA-C----
1 CTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTAT
* * * * *
1154740 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTAGCATCTTGT
1 CTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTAT
* * *
1154788 CTTTAAGACCAATGTCACTGGCCTTGAATTAGCACATTGG---C--A-
1 CTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTAT
* *
1154830 ---TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTAACCAT
1 CTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTT----AT
* * *
1154879 ATTTAAGACCAATGTTGCTGGCCTTGAATCAGCACATTGGCACCTTCAT
1 CTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTT-AT
* * * * *
1154928 CTTTAAGTCCAACATCGTTGCCCTTGAATCAGCATATTGGCA-C----
1 CTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTAT
* * * *
1154971 CTTTAAGCCCAATGTTGCTGGCCTTGAATCAGCACATTGGCGCCTTCAT
1 CTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTT-AT
* * * *
1155020 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTAGCGCCTTCATCAT
1 CTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACC-T--T-AT
* * * *
1155072 CTTTAA-ACCCAATGTCACTAGCCTTGAATCAGCACATTGGCATTCTTCTCAT
1 CTTTAAGA-CCAATATCGCTGGCCTTGAATCAGCACATTGGCA--C--CTTAT
* * * * * * * *
1155124 CTTCAAGTCTAATGTCGCTGACCGTGAATCAGCACATTGACATTCTTTACAT
1 CTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA--CCTT--AT
** * * *
1155176 CTTTAA-ACCCAATATCATTGGTCTCGAATCAGCATATTGGCACCTT
1 CTTTAAGA-CCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTT
1155222 TATTACTTTT
Statistics
Matches: 409, Mismatches: 80, Indels: 71
0.73 0.14 0.13
Matches are distributed among these distances:
39 32 0.08
42 1 0.00
43 71 0.17
44 2 0.00
45 1 0.00
48 37 0.09
49 111 0.27
50 5 0.01
52 146 0.36
54 1 0.00
55 1 0.00
56 1 0.00
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.31
Consensus pattern (48 bp):
CTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTAT
Found at i:1154848 original size:39 final size:39
Alignment explanation
Indices: 1154791--1154868 Score: 111
Period size: 39 Copynumber: 2.0 Consensus size: 39
1154781 ATCTTGTCTT
* *
1154791 TAAGACCAATGTCACTGGCCTTGAATTAGCACATTGGCA
1 TAAGACCAATATCACTGGCCTTGAATCAGCACATTGGCA
* * *
1154830 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
1 TAAGACCAATATCACTGGCCTTGAATCAGCACATTGGCA
1154869 CCTTAACCAT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (39 bp):
TAAGACCAATATCACTGGCCTTGAATCAGCACATTGGCA
Found at i:1154884 original size:91 final size:88
Alignment explanation
Indices: 1154651--1155113 Score: 400
Period size: 92 Copynumber: 5.0 Consensus size: 88
1154641 GTGGCACCTT
* *
1154651 TAAGTCCAATATAGCTGGCCTTGAATCAACATATTGGCAACTTTATCTTTAAGACCAATGTCGCT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAAC-TTATCTTTAAGACCAATGTCGCT
*
1154716 AGCCTTGAATCAGCACATTGGCACC
65 GGCCTTGAATCAGCACATTGGCA-C
* * * *
1154741 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTAGCATCTTGTCTTTAAGACCAATGTCAC
1 --TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAACTTATCTTTAAGACCAATGTCGC
*
1154806 TGGCCTTGAATTAGCACATTGGCA-
64 TGGCCTTGAATCAGCACATTGGCAC
* * * *
1154830 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTAACCATATTTAAGACCAATGTT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAACTT----ATCTTTAAGACCAATGTC
1154895 GCTGGCCTTGAATCAGCACATTGGCACCTTCATC
62 GCTGGCCTTGAATCAGCACATTGG------CA-C
* * * * *
1154929 TTTAAGTCCAACATCGTTGCCCTTGAATCAGCATATTGGC-AC----CTTTAAGCCCAATGTTGC
1 --TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAACTTATCTTTAAGACCAATGTCGC
1154989 TGGCCTTGAATCAGCACATTGGCGCCTTCATC
64 TGGCCTTGAATCAGCACATT-G-G----CA-C
** *
1155021 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTAGCGCCTTCATCATCTTTAA-ACCCAAT
1 --TAAGTCCAATATCGCTGGCCTTGAATCAGCATATT-G-G-CAAC-TTATCTTTAAGA-CCAAT
* *
1155085 GTCACTAGCCTTGAATCAGCACATTGGCA
59 GTCGCTGGCCTTGAATCAGCACATTGGCA
1155114 TTCTTCTCAT
Statistics
Matches: 314, Mismatches: 31, Indels: 49
0.80 0.08 0.12
Matches are distributed among these distances:
87 40 0.13
91 79 0.25
92 115 0.37
93 2 0.01
94 2 0.01
95 3 0.01
96 1 0.00
97 2 0.01
99 1 0.00
100 2 0.01
101 67 0.21
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (88 bp):
TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAACTTATCTTTAAGACCAATGTCGCTG
GCCTTGAATCAGCACATTGGCAC
Found at i:1159330 original size:19 final size:21
Alignment explanation
Indices: 1159287--1159339 Score: 76
Period size: 19 Copynumber: 2.7 Consensus size: 21
1159277 CATATCCAGA
*
1159287 TGTATCGATACAT-CATGCTT
1 TGTATCGATACATGCATGCAT
1159307 TGTATCGATACATGC-T-CAT
1 TGTATCGATACATGCATGCAT
1159326 TGTATCGATACATG
1 TGTATCGATACATG
1159340 AAACTGGCAG
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
19 16 0.52
20 14 0.45
21 1 0.03
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (21 bp):
TGTATCGATACATGCATGCAT
Found at i:1159391 original size:20 final size:19
Alignment explanation
Indices: 1159364--1159420 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 19
1159354 TACCCTAAGT
*
1159364 GAAATGTATCGATACATGG
1 GAAATGTATCGATACATGA
1159383 GACAATGTATCGATACATGA
1 GA-AATGTATCGATACATGA
*
1159403 GAAATTGTGTCGATACAT
1 GAAA-TGTATCGATACAT
1159421 CATGTCTAAC
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
19 4 0.12
20 30 0.88
ACGTcount: A:0.37, C:0.12, G:0.23, T:0.28
Consensus pattern (19 bp):
GAAATGTATCGATACATGA
Found at i:1167553 original size:20 final size:19
Alignment explanation
Indices: 1167508--1167562 Score: 83
Period size: 19 Copynumber: 2.8 Consensus size: 19
1167498 TGTATCGATA
* *
1167508 CATTGTATTGACACATACT
1 CATTGTATCGATACATACT
1167527 CATTGTATCGATACATACT
1 CATTGTATCGATACATACT
1167546 CAATTGTATCGATACAT
1 C-ATTGTATCGATACAT
1167563 GAAACTAGCA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
19 18 0.55
20 15 0.45
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (19 bp):
CATTGTATCGATACATACT
Found at i:1168751 original size:26 final size:26
Alignment explanation
Indices: 1168721--1168773 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1168711 AAGGGCTAGA
*
1168721 AATTTTCTTTTAATAACAAAAAGGGG
1 AATTTTCTTTCAATAACAAAAAGGGG
*
1168747 AATTTTCTTTCAATAACAAAAGGGGG
1 AATTTTCTTTCAATAACAAAAAGGGG
1168773 A
1 A
1168774 GAAAAATCGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.42, C:0.09, G:0.17, T:0.32
Consensus pattern (26 bp):
AATTTTCTTTCAATAACAAAAAGGGG
Found at i:1169499 original size:62 final size:62
Alignment explanation
Indices: 1169421--1169558 Score: 240
Period size: 62 Copynumber: 2.2 Consensus size: 62
1169411 ACATTACGCT
* * *
1169421 TTGTATCGATATATGAAAATGGTAGTAGCTACCCTAAGTGAAATGTATCAATATATGGGGCA
1 TTGTATCGATACATGAAAATGGTAGTAGCTACCCTAAGTGAAATGTATCAATACATGGGACA
1169483 TTGTATCGATACATGAAAATGGTAGTAGCTACCCTAAGTGAAATGTATCAATACATGGGACA
1 TTGTATCGATACATGAAAATGGTAGTAGCTACCCTAAGTGAAATGTATCAATACATGGGACA
*
1169545 TTCTATCGATACAT
1 TTGTATCGATACAT
1169559 TATATTGATG
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 72 1.00
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (62 bp):
TTGTATCGATACATGAAAATGGTAGTAGCTACCCTAAGTGAAATGTATCAATACATGGGACA
Found at i:1176246 original size:21 final size:21
Alignment explanation
Indices: 1176220--1176264 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
1176210 GGTTGGAAGT
1176220 AAACCATCACATTTCTTGTCA
1 AAACCATCACATTTCTTGTCA
1176241 AAACCATCACATTTCTTGTCA
1 AAACCATCACATTTCTTGTCA
1176262 AAA
1 AAA
1176265 TCTAGCTATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.38, C:0.27, G:0.04, T:0.31
Consensus pattern (21 bp):
AAACCATCACATTTCTTGTCA
Found at i:1177161 original size:86 final size:84
Alignment explanation
Indices: 1176960--1177938 Score: 669
Period size: 86 Copynumber: 11.4 Consensus size: 84
1176950 TTTTAAATCT
* * * * * * *
1176960 CACAAGTCAGTGGCACCTTTTTAAAGCCCACACAAGTCGATGGCATCCTTTCAAAGCCTACACAA
1 CACAAGTCAGTGGCACCCTTTCAAAG-CC-CACAAGTAGGTGGCACCCTTTTAAAGCC--CACGA
*
1177025 G-CTAGTGGCAACCCTTTTAAAGCC
62 GTC-AGTGGC-ACCCTTTCAAAGCC
* * * *
1177049 TACGAGTTAGTGGCACCCTTTTAAAGCCCACATAAGTAGGTGGCACCCTTTTAAAGCCCACGAGT
1 CACAAGTCAGTGGCACCCTTTCAAAGCCCAC--AAGTAGGTGGCACCCTTTTAAAGCCCACGAGT
*
1177114 CATTGGCACCCTTTCAAAGCC
64 CAGTGGCACCCTTTCAAAGCC
* * * * * *
1177135 CATAAGTTAGGGGCACCCTTTCAAAGCCCACAAGTCGGTGGCACCTTTTTAAAGCCCACAAGTCA
1 CACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTAGGTGGCACCCTTTTAAAGCCCACGAGTCA
1177200 GTGGCACCCTTTCTTAAAGCC
66 GTGGCACCCTTTC--AAAGCC
* * * *
1177221 CACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTAAGTGGCACCTTTTTAAAG-CCACGAGCCA
1 CACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTAGGTGGCACCCTTTTAAAGCCCACGAGTCA
*
1177285 GTGGCACCCTTTTAAAGCCC
66 GTGGCACCCTTTCAAAG-CC
* ** * * * *
1177305 ACACAAGTCGGTGATACTCTTTCAAAGCCTACACAAACT-GGTGGTAACCCTTTTAAAGCCCATG
1 -CACAAGTCAGTGGCACCCTTTCAAAGCC--CAC-AAGTAGGTGG-CACCCTTTTAAAGCCCACG
* *
1177369 AGTCAGTGGCACTCTTTTAAAGCC
61 AGTCAGTGGCACCCTTTCAAAGCC
* * * * * * * * *
1177393 CACAAATCCGGGGGCACCTTTTCAAAGCTCACAAGTCA-ATGACACCCTTTCTTGAAGCCCACAA
1 CACAAGT-CAGTGGCACCCTTTCAAAGCCCACAAGT-AGGTGGCACCC-TT-TTAAAGCCCACGA
* * *
1177457 GTCAGTGGCATCCTTTCAAATCT
62 GTCAGTGGCACCCTTTCAAAGCC
* ** * **
1177480 CACAAGTCAGTGGCACCGTTTCAAAGCCCACGGGTCA-ATGGCATGCTTTTAAAAGCCCACGAGT
1 CACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGT-AGGTGGCACCCTTTT-AAAGCCCACGAGT
* *
1177544 CAGTGGCATCCTTCCAAAAGCC
64 CAGTGGCACCCTTTC-AAAGCC
* ** * ** * *
1177566 CACAAGTCATTGGCACTTTTTCAAAGCCCACAAGTCA-GTGACATTCTTTTCAAAGCCCCCAAGT
1 CACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGT-AGGTGGCACCCTTTT-AAAGCCCACGAGT
* *
1177630 TAGTGGCACCCTTTTTTAAAGCC
64 CAGTGGCACCC--TTTCAAAGCC
* * * ** ** * * * *
1177653 CACAAGTCTGTGGCACCCCTTCAAAAACCTGCAAGTTTGTGTCA-TCTTTTCAAAAGTCCACAAG
1 CACAAGTCAGTGGCACCCTTTC-AAAGCCCACAAGTAGGTGGCACCCTTTT--AAAGCCCACGAG
* *
1177717 TCAATGGCATCCTTTCAAAGCC
63 TCAGTGGCACCCTTTCAAAGCC
* * * * * * *
1177739 CAC-A---AGTGGCATCCTTTTAAAAGCCCACAATTCA-GTAGCATCCTTTTAAAAGCCTACAAG
1 CACAAGTCAGTGGCA-CCCTTTCAAAGCCCACAAGT-AGGTGGCACCCTTTT-AAAGCCCACGAG
*
1177799 TTC-GTGGCATCCTTTCAAAGCC
63 -TCAGTGGCACCCTTTCAAAGCC
** * * *
1177821 CAC--GTC-GATGGCAACCCTTTCAAAGCCCATGAGTCA-ATGGCACCCTTTCAAAGCCCATGAG
1 CACAAGTCAG-TGGC-ACCCTTTCAAAGCCCACAAGT-AGGTGGCACCCTTTTAAAGCCCACGAG
* *
1177882 TTAATGGCACCCTTTCAAAGCC
63 TCAGTGGCACCCTTTCAAAGCC
* *
1177904 CACAAGTCAGGGGCACCTTTTCAAAGCCCACAAGT
1 CACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGT
1177939 CAATGGCATC
Statistics
Matches: 712, Mismatches: 141, Indels: 79
0.76 0.15 0.08
Matches are distributed among these distances:
82 52 0.07
83 45 0.06
84 95 0.13
85 85 0.12
86 209 0.29
87 89 0.12
88 70 0.10
89 67 0.09
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.24
Consensus pattern (84 bp):
CACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTAGGTGGCACCCTTTTAAAGCCCACGAGTCA
GTGGCACCCTTTCAAAGCC
Found at i:1177411 original size:231 final size:226
Alignment explanation
Indices: 1176946--1177670 Score: 685
Period size: 231 Copynumber: 3.1 Consensus size: 226
1176936 CTCCAAATCA
*
1176946 ACCTTTTTAAATCTCACAAGTCAGTGGCA-CCTTT-TTAAAGCCCACACAAGTC-GATGGCATCC
1 ACCTTTTTAAAGCTCACAAGTCAGTGGCACCCTTTCTTAAAG-CC-CACAAGTCAG-TGGCATCC
*
1177008 TTTCAAAGCCTACACAAGCTAGTGGCAACCCTTTTAAAGCCTACGAGTTAGTGGCACCCTTTTAA
63 TTTCAAAGCC--CACAAG-TAGTGGC-ACCCTTTTAAAGCC-ACGAGTCAGTGGCACCCTTTTAA
* * * ** *
1177073 AGCCCACATAAGTAGGTGGCACCCTTTTAAAGCCCACGAGTCATTGGCACCCTTTCAAAGCCCAT
123 AGCCCACACAAGTAGGTGACACCCTTTCAAAGCCCACGAAACATTGGAACCCTTTCAAAGCCCAT
* * *
1177138 AAGTTAGGGGCACCCTTTCAAAGCCCACAAGTCGGTGGC
188 AAGTCAGGGGCACCCTTTCAAAGCCCACAAATCGGGGGC
*
1177177 ACCTTTTTAAAGCCCACAAGTCAGTGGCACCCTTTCTTAAAGCCCACAAGTCAGTGGCATCCTTT
1 ACCTTTTTAAAGCTCACAAGTCAGTGGCACCCTTTCTTAAAGCCCACAAGTCAGTGGCATCCTTT
* *
1177242 CAAAGCCCACAAGTAAGTGGCACCTTTTTAAAGCCACGAGCCAGTGGCACCCTTTTAAAGCCCAC
66 CAAAGCCCACAAGT-AGTGGCACCCTTTTAAAGCCACGAGTCAGTGGCACCCTTTTAAAGCCCAC
* * * * *
1177307 ACAAGTCGGTGATACTCTTTCAAAGCCTACAC-AAAC-TGGTGGTAACCCTTTTAAAGCCCATGA
130 ACAAGTAGGTGACACCCTTTCAAAGCC--CACGAAACAT--TGG-AACCCTTTCAAAGCCCATAA
* * *
1177370 GTCAGTGGCACTCTTTTAAAGCCCACAAATCCGGGGGC
190 GTCAGGGGCACCCTTTCAAAGCCCACAAAT-CGGGGGC
* * * *
1177408 ACCTTTTCAAAGCTCACAAGTCAATGACACCCTTTCTTGAAGCCCACAAGTCAGTGGCATCCTTT
1 ACCTTTTTAAAGCTCACAAGTCAGTGGCACCCTTTCTTAAAGCCCACAAGTCAGTGGCATCCTTT
* * * * * * **
1177473 CAAATCTCACAAGTCAGTGGCACCGTTTCAAAGCCCACGGGTCAATGGCATGCTTTTAAAAG-CC
66 CAAAGCCCACAAGT-AGTGGCACCCTTTTAAAG-CCACGAGTCAGTGGCACCCTTTT-AAAGCCC
* * * * * * ** *
1177537 -CACGAGTCA-GTGGCATCCTTCCAAAAGCCCAC-AAGTCATTGGCACTTTTTCAAAGCCCACAA
128 ACACAAGT-AGGTGACACCCTTTC-AAAGCCCACGAA-ACATTGGAACCCTTTCAAAGCCCATAA
* * * * * * ** *
1177599 GTCAGTGACATTCTTTTCAAAGCCCCCAAGTTAGTGGC
190 GTCAGGGGCA-CCCTTTCAAAGCCCACAAATCGGGGGC
* *
1177637 ACCCTTTTTTAAAGCCCACAAGTCTGTGGCACCC
1 A-CC-TTTTTAAAGCTCACAAGTCAGTGGCACCC
1177671 CTTCAAAAAC
Statistics
Matches: 409, Mismatches: 66, Indels: 38
0.80 0.13 0.07
Matches are distributed among these distances:
227 50 0.12
228 16 0.04
229 46 0.11
230 66 0.16
231 186 0.45
232 35 0.09
233 10 0.02
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (226 bp):
ACCTTTTTAAAGCTCACAAGTCAGTGGCACCCTTTCTTAAAGCCCACAAGTCAGTGGCATCCTTT
CAAAGCCCACAAGTAGTGGCACCCTTTTAAAGCCACGAGTCAGTGGCACCCTTTTAAAGCCCACA
CAAGTAGGTGACACCCTTTCAAAGCCCACGAAACATTGGAACCCTTTCAAAGCCCATAAGTCAGG
GGCACCCTTTCAAAGCCCACAAATCGGGGGC
Found at i:1177441 original size:29 final size:29
Alignment explanation
Indices: 1176960--1177959 Score: 671
Period size: 28 Copynumber: 35.0 Consensus size: 29
1176950 TTTTAAATCT
*
1176960 CACAAGTCAGTGGCA-CCTTTTTAAAGCCC
1 CACAAGTCAGTGGCATCCTTTTCAAAG-CC
1176989 ACACAAGTC-GATGGCATCC-TTTCAAAGCC
1 -CACAAGTCAG-TGGCATCCTTTTCAAAGCC
*
1177018 TACACAAG-CTAGTGGCAACCCTTTT-AAAGCC
1 --CACAAGTC-AGTGGC-ATCCTTTTCAAAGCC
* * * *
1177049 TACGAGTTAGTGGCACCCTTTT-AAAGCC
1 CACAAGTCAGTGGCATCCTTTTCAAAGCC
*
1177077 CACATAAGT-AGGTGGCACCCTTTT-AAAGCC
1 CAC--AAGTCA-GTGGCATCCTTTTCAAAGCC
* * *
1177107 CACGAGTCATTGGCA-CCCTTTCAAAGCC
1 CACAAGTCAGTGGCATCCTTTTCAAAGCC
* * * *
1177135 CATAAGTTAGGGGCA-CCCTTTCAAAGCC
1 CACAAGTCAGTGGCATCCTTTTCAAAGCC
* *
1177163 CACAAGTCGGTGGCA-CCTTTTTAAAGCC
1 CACAAGTCAGTGGCATCCTTTTCAAAGCC
* *
1177191 CACAAGTCAGTGGCACCCTTTCTTAAAGCC
1 CACAAGTCAGTGGCATCCTTT-TCAAAGCC
1177221 CACAAGTCAGTGGCATCC-TTTCAAAGCC
1 CACAAGTCAGTGGCATCCTTTTCAAAGCC
* *
1177249 CACAAGTAAGTGGCA-CCTTTTTAAAG-C
1 CACAAGTCAGTGGCATCCTTTTCAAAGCC
* * *
1177276 CACGAGCCAGTGGCACCCTTTT-AAAGCCC
1 CACAAGTCAGTGGCATCCTTTTCAAAG-CC
* *
1177305 ACACAAGTCGGT-G-ATACTCTTTCAAAGCC
1 -CACAAGTCAGTGGCATCCT-TTTCAAAGCC
* * * *
1177334 TACACAA-ACTGGTGGTAACCCTTTT-AAAGCC
1 --CACAAGTC-AGTGG-CATCCTTTTCAAAGCC
**
1177365 CATGAGTCAGTGGCA-CTCTTTT-AAAGCC
1 CACAAGTCAGTGGCATC-CTTTTCAAAGCC
* * * *
1177393 CACAAATCCGGGGGCA-CCTTTTCAAAGCT
1 CACAAGT-CAGTGGCATCCTTTTCAAAGCC
* * * **
1177422 CACAAGTCAATGACACCCTTTCTTGAAGCC
1 CACAAGTCAGTGGCATCCTTT-TCAAAGCC
* *
1177452 CACAAGTCAGTGGCATCC-TTTCAAATCT
1 CACAAGTCAGTGGCATCCTTTTCAAAGCC
*
1177480 CACAAGTCAGTGGCA-CCGTTTCAAAGCC
1 CACAAGTCAGTGGCATCCTTTTCAAAGCC
** * * *
1177508 CACGGGTCAATGGCATGCTTTTAAAAGCC
1 CACAAGTCAGTGGCATCCTTTTCAAAGCC
* *
1177537 CACGAGTCAGTGGCATCC-TTCCAAAAGCC
1 CACAAGTCAGTGGCATCCTTTTC-AAAGCC
* *
1177566 CACAAGTCATTGGCA-CTTTTTCAAAGCC
1 CACAAGTCAGTGGCATCCTTTTCAAAGCC
* *
1177594 CACAAGTCAGTGACATTCTTTTCAAAGCC
1 CACAAGTCAGTGGCATCCTTTTCAAAGCC
* * * *
1177623 CCCAAGTTAGTGGCACCCTTTTTTAAAGCC
1 CACAAGTCAGTGGCATCC-TTTTCAAAGCC
* ** *
1177653 CACAAGTCTGTGGCA-CCCCTTCAAAAACC
1 CACAAGTCAGTGGCATCCTTTTC-AAAGCC
** ** * *
1177682 TGCAAGTTTGTGTCAT-CTTTTCAAAAGTC
1 CACAAGTCAGTGGCATCCTTTTC-AAAGCC
*
1177711 CACAAGTCAATGGCATCC-TTTCAAAGCC
1 CACAAGTCAGTGGCATCCTTTTCAAAGCC
*
1177739 CAC-A---AGTGGCATCCTTTTAAAAGCC
1 CACAAGTCAGTGGCATCCTTTTCAAAGCC
* * *
1177764 CACAATTCAGTAGCATCCTTTTAAAAGCC
1 CACAAGTCAGTGGCATCCTTTTCAAAGCC
*
1177793 TACAAGTTC-GTGGCATCC-TTTCAAAGCC
1 CACAAG-TCAGTGGCATCCTTTTCAAAGCC
* *
1177821 CAC--GTC-GATGGCAACCCTTTCAAAGCC
1 CACAAGTCAG-TGGCATCCTTTTCAAAGCC
** * *
1177848 CATGAGTCAATGGCA-CCCTTTCAAAGCC
1 CACAAGTCAGTGGCATCCTTTTCAAAGCC
** * * *
1177876 CATGAGTTAATGGCA-CCCTTTCAAAGCC
1 CACAAGTCAGTGGCATCCTTTTCAAAGCC
*
1177904 CACAAGTCAGGGGCA-CCTTTTCAAAGCC
1 CACAAGTCAGTGGCATCCTTTTCAAAGCC
*
1177932 CACAAGTCAATGGCAT-CTTTTCCAAAGC
1 CACAAGTCAGTGGCATCCTTTT-CAAAGC
1177960 ATCCTTTCAA
Statistics
Matches: 783, Mismatches: 132, Indels: 111
0.76 0.13 0.11
Matches are distributed among these distances:
24 9 0.01
25 15 0.02
26 9 0.01
27 40 0.05
28 313 0.40
29 221 0.28
30 148 0.19
31 19 0.02
32 6 0.01
33 3 0.00
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.24
Consensus pattern (29 bp):
CACAAGTCAGTGGCATCCTTTTCAAAGCC
Found at i:1177537 original size:316 final size:317
Alignment explanation
Indices: 1176946--1177623 Score: 832
Period size: 316 Copynumber: 2.1 Consensus size: 317
1176936 CTCCAAATCA
* * *
1176946 ACCTTTTTAAATCTCACAAGTCAGTGGCACCTTTTTAAAGCCCACACAAGTCGATGGCATCCTTT
1 ACCTTTTTAAAGC-CACAAGCCAGTGGCACCCTTTTAAAGCCCACACAAGTCGATGGCATCCTTT
* * *
1177011 CAAAGCCTACACAAGCTAGTGGCAACCCTTTTAAAGCCTACGAGTTAGTGGCACCCTTTTAAAGC
65 CAAAGCCTACACAAACTAGTGGCAACCCTTTTAAAGCCCACGAGTCAGTGGCACCCTTTTAAAGC
* * * * *
1177076 CCACATAAGTAGGTGGCACCCTTTTAAAGCCCACGAGTCATTGGCACCCTTTCAAAGCCCATAAG
130 CCACATAAGTAGGGGGCACCCTTTTAAAGCCCACAAGTCAATGACACCCTTTCAAAGCCCACAAG
* * * * *
1177141 TTAGGGGCACCCTTTCAAAGCCCACAAGTCGGTGGCACCTTTTTAAAGCCCACAAGTCAGTGGCA
195 TCAGGGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCGTTTCAAAGCCCACAAGTCAATGGCA
* *
1177206 CCCTTTCTTAAAGCCCACAAGTCAGTGGCATCCTTTC-AAAGCCCACAAGTAAGTGGC
260 CCCTTTCTAAAAGCCCACAAGTCAGTGGCATCCTTCCAAAAGCCCACAAGTAAGTGGC
* *
1177263 ACCTTTTTAAAGCCACGAGCCAGTGGCACCCTTTTAAAGCCCACACAAGTCGGT-G-ATACTCTT
1 ACCTTTTTAAAGCCACAAGCCAGTGGCACCCTTTTAAAGCCCACACAAGTCGATGGCAT-C-CTT
* * * *
1177326 TCAAAGCCTACACAAACTGGTGGTAACCCTTTTAAAGCCCATGAGTCAGTGGCACTCTTTTAAAG
64 TCAAAGCCTACACAAACTAGTGGCAACCCTTTTAAAGCCCACGAGTCAGTGGCACCCTTTTAAAG
* * *
1177391 CCCACA-AA-TCCGGGGGCA-CCTTTTCAAAGCTCACAAGTCAATGACACCCTTTCTTGAAGCCC
129 CCCACATAAGT-AGGGGGCACCCTTTT-AAAGCCCACAAGTCAATGACACCCTTTC--AAAGCCC
* * * * **
1177453 ACAAGTCAGTGGCATCCTTTCAAATCTCACAAGTCAGTGGCACCGTTTCAAAGCCCACGGGTCAA
190 ACAAGTCAGGGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCGTTTCAAAGCCCACAAGTCAA
** * * *
1177518 TGGCATGCTTT-TAAAAGCCCACGAGTCAGTGGCATCCTTCCAAAAGCCCACAAGTCATTGGC
255 TGGCACCCTTTCTAAAAGCCCACAAGTCAGTGGCATCCTTCCAAAAGCCCACAAGTAAGTGGC
* * **
1177580 A-CTTTTTCAAAGCCCACAAGTCAGTGACATTCTTTTCAAAGCCC
1 ACCTTTTT-AAAG-CCACAAGCCAGTGGCACCCTTTT-AAAGCCC
1177624 CCAAGTTAGT
Statistics
Matches: 308, Mismatches: 43, Indels: 18
0.83 0.12 0.05
Matches are distributed among these distances:
314 9 0.03
315 34 0.11
316 137 0.44
317 103 0.33
318 18 0.06
319 7 0.02
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.24
Consensus pattern (317 bp):
ACCTTTTTAAAGCCACAAGCCAGTGGCACCCTTTTAAAGCCCACACAAGTCGATGGCATCCTTTC
AAAGCCTACACAAACTAGTGGCAACCCTTTTAAAGCCCACGAGTCAGTGGCACCCTTTTAAAGCC
CACATAAGTAGGGGGCACCCTTTTAAAGCCCACAAGTCAATGACACCCTTTCAAAGCCCACAAGT
CAGGGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCGTTTCAAAGCCCACAAGTCAATGGCAC
CCTTTCTAAAAGCCCACAAGTCAGTGGCATCCTTCCAAAAGCCCACAAGTAAGTGGC
Found at i:1177767 original size:25 final size:25
Alignment explanation
Indices: 1177721--1177799 Score: 88
Period size: 29 Copynumber: 3.0 Consensus size: 25
1177711 CACAAGTCAA
*
1177721 TGGCATCC-TTTCAAAGCCCACAAG
1 TGGCATCCTTTTAAAAGCCCACAAG
1177745 TGGCATCCTTTTAAAAGCCCACAATTCAG
1 TGGCATCCTTTTAAAAGCCCAC-A---AG
* *
1177774 TAGCATCCTTTTAAAAGCCTACAAG
1 TGGCATCCTTTTAAAAGCCCACAAG
1177799 T
1 T
1177800 TCGTGGCATC
Statistics
Matches: 47, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
24 8 0.17
25 15 0.32
26 1 0.02
28 1 0.02
29 22 0.47
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.27
Consensus pattern (25 bp):
TGGCATCCTTTTAAAAGCCCACAAG
Found at i:1177862 original size:55 final size:53
Alignment explanation
Indices: 1177089--1177946 Score: 267
Period size: 58 Copynumber: 15.1 Consensus size: 53
1177079 CATAAGTAGG
* * * * * *
1177089 TGGCACCCTTTTAAAGCCCACGAGTCATTGGCACCCTTTCAAAGCCCATAAGTTAG
1 TGGCACCCTTTCAAAGCCCACAAGTCAATGGCA-CCTTTCAAAGCCC--ACGTCAA
* ** * *
1177145 GGGCACCCTTTCAAAGCCCACAAGTCGGTGGCACCTTTTTAAAGCCCACAAGTCAG
1 TGGCACCCTTTCAAAGCCCACAAGTCAATGGCACC-TTTCAAAGCCCAC--GTCAA
*
1177201 TGGCACCCTTTCTTAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGT-AA
1 TGGCACCCTTTC--AAAGCCCACAAGTCAATGGCA-CCTTTCAAAGCCCAC--GTCAA
* * * * * * *
1177258 GTGGCACCTTTTTAAAG-CCACGAGCCAGTGGCACCCTTTTAAAGCCCAC-ACAA
1 -TGGCACCCTTTCAAAGCCCACAAGTCAATGGCA-CCTTTCAAAGCCCACGTCAA
* * * ** * * * *
1177311 GTCGGTGATACTCTTTCAAAGCCTACACAA-ACTGGTGGTAACCCTTTTAAAGCCCATGAGTCAG
1 -T--G-G-CACCCTTTCAAAGCC--CACAAGTC-AATGG-CA-CCTTTCAAAGCCCA--CGTCAA
* * * *** *
1177375 TGGCACTCTTTTAAAGCCCACAAATCCGGGGGCACCTTTTCAAAGCTCACAAGTCAA
1 TGGCACCCTTTCAAAGCCCACAAGT-CAATGGCACC-TTTCAAAGC-C-CACGTCAA
* * * * * *
1177432 TGACACCCTTTCTTGAAGCCCACAAGTCAGTGGCATCCTTTCAAATCTCACAAGTCAG
1 TGGCACCCTTTC--AAAGCCCACAAGTCAATGGCA-CCTTTCAAAGC-C-CACGTCAA
* ** * * *
1177490 TGGCACCGTTTCAAAGCCCACGGGTCAATGGCATGCTTTTAAAAGCCCACGAGTCAG
1 TGGCACCCTTTCAAAGCCCACAAGTCAATGGCA--CCTTTCAAAGCCCAC--GTCAA
* * * * *
1177547 TGGCATCCTTCCAAAAGCCCACAAGTCATTGGCACTTTTTCAAAGCCCACAAGTCAG
1 TGGCACCCTTTC-AAAGCCCACAAGTCAATGGCAC-CTTTCAAAGCCCAC--GTCAA
* * * * * * * **
1177604 TGACATTCTTTTCAAAGCCCCCAAGTTAGTGGCACCCTTTTTTAAAGCCCACAAGTCTG
1 TGGCA-CCCTTTCAAAGCCCACAAGTCAATGGCA-CC--TTTCAAAGCCCAC--GTCAA
* * ** *** * * *
1177663 TGGCACCCCTTCAAAAACCTGCAAGTTTGTGTCATCTTTTCAAAAGTCCACAAGTCAA
1 TGGCACCCTTTC-AAAGCCCACAAGTCAATGGCA-CCTTTC-AAAG-CC-CACGTCAA
* * * *
1177721 TGGCATCCTTTCAAAGCCCACAAG----TGGCATCCTTTTAAAAGCCCACAATTCAG
1 TGGCACCCTTTCAAAGCCCACAAGTCAATGGCA-CC-TTTCAAAGCCCAC--GTCAA
* * * * * *
1177774 TAGCATCCTTTTAAAAGCCTACAAGTTC-GTGGCATCCTTTCAAAGCCCACGTCGA
1 TGGCA-CCCTTTCAAAGCCCACAAG-TCAATGGCA-CCTTTCAAAGCCCACGTCAA
** * *
1177829 TGGCAACCCTTTCAAAGCCCATGAGTCAATGGCACCCTTTCAAAGCCCATGAGTTAA
1 TGGC-ACCCTTTCAAAGCCCACAAGTCAATGGCA-CCTTTCAAAGCCCA--CGTCAA
**
1177886 TGGCACCCTTTCAAAGCCCACAAGTCAGGGGCACCTTTTCAAAGCCCACAAGTCAA
1 TGGCACCCTTTCAAAGCCCACAAGTCAATGGCACC-TTTCAAAGCCCAC--GTCAA
1177942 TGGCA
1 TGGCA
1177947 TCTTTTCCAA
Statistics
Matches: 620, Mismatches: 126, Indels: 112
0.72 0.15 0.13
Matches are distributed among these distances:
51 2 0.00
52 2 0.00
53 21 0.03
54 21 0.03
55 73 0.12
56 126 0.20
57 132 0.21
58 139 0.22
59 73 0.12
60 11 0.02
61 17 0.03
63 1 0.00
64 2 0.00
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (53 bp):
TGGCACCCTTTCAAAGCCCACAAGTCAATGGCACCTTTCAAAGCCCACGTCAA
Found at i:1177990 original size:28 final size:26
Alignment explanation
Indices: 1177958--1178032 Score: 87
Period size: 28 Copynumber: 2.8 Consensus size: 26
1177948 CTTTTCCAAA
* *
1177958 GCATCCTTTCAAAGCCCATTAGTCAATG
1 GCATCCTTTCAAAGCCCA-CAATC-ATG
1177986 GCATCCTTTCAAATGCCCACAATCATG
1 GCATCCTTTCAAA-GCCCACAATCATG
* *
1178013 GCATCTTTTTAAAGCCCACA
1 GCATCCTTTCAAAGCCCACA
1178033 CAAGTTAGTG
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
26 7 0.17
27 14 0.33
28 16 0.38
29 5 0.12
ACGTcount: A:0.29, C:0.31, G:0.12, T:0.28
Consensus pattern (26 bp):
GCATCCTTTCAAAGCCCACAATCATG
Found at i:1178059 original size:32 final size:32
Alignment explanation
Indices: 1178023--1178216 Score: 189
Period size: 32 Copynumber: 6.2 Consensus size: 32
1178013 GCATCTTTTT
* * *
1178023 AAAGCCCACACAAGTTAGTGGCAACTTATCTC
1 AAAGCCCACACAAGTTGGTGGCAACCTCTCTC
* * * * * * *
1178055 AAAGCCTATATAAGTTGCTAGCAACC-CTTTT
1 AAAGCCCACACAAGTTGGTGGCAACCTCTCTC
* *
1178086 AAAGCCCACACAAGTTGGTGGCAACCTGTTTC
1 AAAGCCCACACAAGTTGGTGGCAACCTCTCTC
* *
1178118 AAAGCCCACACAAGCTGGTGGCAACC-CTCTT
1 AAAGCCCACACAAGTTGGTGGCAACCTCTCTC
* * *
1178149 AAAGCTCACACAAGTCGGTGGCAACCTCTCTT
1 AAAGCCCACACAAGTTGGTGGCAACCTCTCTC
* *
1178181 AAAGCCCACACAAGTTGTTGGC-ACC-CTTTC
1 AAAGCCCACACAAGTTGGTGGCAACCTCTCTC
1178211 AAAGCC
1 AAAGCC
1178217 TATAAGTCAG
Statistics
Matches: 131, Mismatches: 29, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
30 9 0.07
31 51 0.39
32 71 0.54
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.22
Consensus pattern (32 bp):
AAAGCCCACACAAGTTGGTGGCAACCTCTCTC
Found at i:1178087 original size:63 final size:63
Alignment explanation
Indices: 1178019--1178216 Score: 218
Period size: 63 Copynumber: 3.2 Consensus size: 63
1178009 CATGGCATCT
* * * * * *
1178019 TTTTAAAGCCCACACAAGTTAGTGGCAACTTATCTCAAAGCCTATATAAGTTGCTAGCAACCC
1 TTTTAAAGCCCACACAAGTTGGTGGCAACCTATCTCAAAGCCCACACAAGCTGCTAGCAACCC
* * * *
1178082 TTTTAAAGCCCACACAAGTTGGTGGCAACCTGTTTCAAAGCCCACACAAGCTGGTGGCAACCC
1 TTTTAAAGCCCACACAAGTTGGTGGCAACCTATCTCAAAGCCCACACAAGCTGCTAGCAACCC
* * * * * * * *
1178145 TCTTAAAGCTCACACAAGTCGGTGGCAACCTCTCTTAAAGCCCACACAAGTTGTTGGC-ACCC
1 TTTTAAAGCCCACACAAGTTGGTGGCAACCTATCTCAAAGCCCACACAAGCTGCTAGCAACCC
*
1178207 TTTCAAAGCC
1 TTTTAAAGCC
1178217 TATAAGTCAG
Statistics
Matches: 114, Mismatches: 21, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
62 11 0.10
63 103 0.90
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (63 bp):
TTTTAAAGCCCACACAAGTTGGTGGCAACCTATCTCAAAGCCCACACAAGCTGCTAGCAACCC
Found at i:1178130 original size:95 final size:93
Alignment explanation
Indices: 1178023--1178216 Score: 221
Period size: 95 Copynumber: 2.1 Consensus size: 93
1178013 GCATCTTTTT
* * * * * *
1178023 AAAGCCCACACAAGTTAGTGGCAACTTATCTCAAAGC-CTATATAAGTTGCTAGCAACC-CTTTT
1 AAAGCCCACACAAGCTAGTGGCAAC-CATCTCAAAGCTC-ACACAAGTCGCTAGCAACCTCTCTT
*
1178086 AAAGCCCACACAAGTTGGTGGCAACCTGTTTC
64 AAAGCCCACACAAGTTGGTGGC-ACC-CTTTC
* * * * *
1178118 AAAGCCCACACAAGCTGGTGGCAACCCTCTTAAAGCTCACACAAGTCGGTGGCAACCTCTCTTAA
1 AAAGCCCACACAAGCTAGTGGCAACCATCTCAAAGCTCACACAAGTCGCTAGCAACCTCTCTTAA
*
1178183 AGCCCACACAAGTTGTTGGCACCCTTTC
66 AGCCCACACAAGTTGGTGGCACCCTTTC
1178211 AAAGCC
1 AAAGCC
1178217 TATAAGTCAG
Statistics
Matches: 84, Mismatches: 13, Indels: 6
0.82 0.13 0.06
Matches are distributed among these distances:
93 10 0.12
94 25 0.30
95 49 0.58
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.22
Consensus pattern (93 bp):
AAAGCCCACACAAGCTAGTGGCAACCATCTCAAAGCTCACACAAGTCGCTAGCAACCTCTCTTAA
AGCCCACACAAGTTGGTGGCACCCTTTC
Found at i:1178233 original size:28 final size:28
Alignment explanation
Indices: 1178199--1178316 Score: 130
Period size: 28 Copynumber: 4.2 Consensus size: 28
1178189 CACAAGTTGT
*
1178199 TGGCACCCTTTCAAAGCCTATAAGTCAG
1 TGGCACCCTTTCAAAGCCTACAAGTCAG
* * *
1178227 TAGCACCCTTT-AAAGCCCACAAGTCAA
1 TGGCACCCTTTCAAAGCCTACAAGTCAG
*
1178254 TGGCATCCTTTCAAAGCCTACAAGTCAG
1 TGGCACCCTTTCAAAGCCTACAAGTCAG
* * * *
1178282 TGGCATCCTTTTAAAACCCACACAAGTCAG
1 TGGCA-CCCTTTCAAAGCC-TACAAGTCAG
1178312 TGGCA
1 TGGCA
1178317 AACCCTTCTA
Statistics
Matches: 74, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
27 22 0.30
28 29 0.39
29 9 0.12
30 14 0.19
ACGTcount: A:0.31, C:0.30, G:0.16, T:0.23
Consensus pattern (28 bp):
TGGCACCCTTTCAAAGCCTACAAGTCAG
Found at i:1178250 original size:27 final size:28
Alignment explanation
Indices: 1177962--1178335 Score: 136
Period size: 32 Copynumber: 12.6 Consensus size: 28
1177952 TCCAAAGCAT
** * *
1177962 CCTTTCAAAGCCCATTAGTCAATGGCAT
1 CCTTTCAAAGCCCACAAGTCAGTGGCAC
*
1177990 CCTTTCAAATGCCCACAA-TCA-TGGCAT
1 CCTTTCAAA-GCCCACAAGTCAGTGGCAC
* * * *
1178017 CTTTTTAAAGCCCACACAAGTTAGTGGCAA
1 CCTTTCAAAG-CC-CACAAGTCAGTGGCAC
* * * * *
1178047 CTTATCTCAAAGCCTATATAAGT-TGCTAGCAAC
1 CCT-T-TCAAAGCC--CACAAGTCAG-TGGC-AC
* **
1178080 CCTTTTAAAGCCCACACAAGTTGGTGGCAAC
1 CCTTTCAAAG-CC-CACAAGTCAGTGGC-AC
* *
1178111 CTGTTTCAAAGCCCACACAAG-CTGGTGGCAAC
1 C-CTTTCAAAG-CC-CACAAGTC-AGTGGC-AC
*
1178143 CCTCTT-AAAGCTCACACAAGTCGGTGGCAAC
1 CCT-TTCAAAGC-C-CACAAGTCAGTGGC-AC
*
1178174 CTCTCTT-AAAGCCCACACAAGT-TGTTGGCAC
1 C-CT-TTCAAAG-CC-CACAAGTCAG-TGGCAC
* * *
1178205 CCTTTCAAAGCCTATAAGTCAGTAGCAC
1 CCTTTCAAAGCCCACAAGTCAGTGGCAC
* *
1178233 CCTTT-AAAGCCCACAAGTCAATGGCAT
1 CCTTTCAAAGCCCACAAGTCAGTGGCAC
*
1178260 CCTTTCAAAGCCTACAAGTCAGTGGCATC
1 CCTTTCAAAGCCCACAAGTCAGTGGCA-C
* * *
1178289 CTTTTAAAACCCACACAAGTCAGTGGCAAAC
1 CCTTTCAAAGCC-CACAAGTCAGTGGC--AC
1178320 CC-TTCTAAAGCCCACA
1 CCTTTC-AAAGCCCACA
1178336 CAAGTTGGTG
Statistics
Matches: 276, Mismatches: 42, Indels: 54
0.74 0.11 0.15
Matches are distributed among these distances:
26 1 0.00
27 37 0.13
28 51 0.18
29 22 0.08
30 34 0.12
31 56 0.20
32 71 0.26
33 4 0.01
ACGTcount: A:0.31, C:0.30, G:0.16, T:0.24
Consensus pattern (28 bp):
CCTTTCAAAGCCCACAAGTCAGTGGCAC
Found at i:1178258 original size:55 final size:56
Alignment explanation
Indices: 1178199--1178303 Score: 158
Period size: 55 Copynumber: 1.9 Consensus size: 56
1178189 CACAAGTTGT
* *
1178199 TGGCACCCTTTCAAAGCCTATAAGTCAGTAGCA-CCCTTTAAAGCCCACAAGTCAA
1 TGGCACCCTTTCAAAGCCTACAAGTCAGTAGCATCCCTTTAAAACCCACAAGTCAA
* * *
1178254 TGGCATCCTTTCAAAGCCTACAAGTCAGTGGCATCCTTTTAAAACCCACA
1 TGGCACCCTTTCAAAGCCTACAAGTCAGTAGCATCCCTTTAAAACCCACA
1178304 CAAGTCAGTG
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
55 30 0.68
56 14 0.32
ACGTcount: A:0.31, C:0.30, G:0.14, T:0.24
Consensus pattern (56 bp):
TGGCACCCTTTCAAAGCCTACAAGTCAGTAGCATCCCTTTAAAACCCACAAGTCAA
Found at i:1178339 original size:32 final size:31
Alignment explanation
Indices: 1178022--1178340 Score: 172
Period size: 32 Copynumber: 10.5 Consensus size: 31
1178012 GGCATCTTTT
* *
1178022 TAAAGCCCACACAAGTTAGTGGCAA-CTTATC
1 TAAAGCCCACACAAGTCAGTGGCAACCCT-TC
* * * * * *
1178053 TCAAAGCCTATATAAGT-TGCTAGCAACCCTTT
1 T-AAAGCCCACACAAGTCAG-TGGCAACCCTTC
** *
1178085 TAAAGCCCACACAAGTTGGTGGCAA-CCTGTT
1 TAAAGCCCACACAAGTCAGTGGCAACCCT-TC
*
1178116 TCAAAGCCCACACAAG-CTGGTGGCAACCC-TC
1 T-AAAGCCCACACAAGTC-AGTGGCAACCCTTC
* *
1178147 TTAAAGCTCACACAAGTCGGTGGCAA-CCTCTC
1 -TAAAGCCCACACAAGTCAGTGGCAACCCT-TC
*
1178179 TTAAAGCCCACACAAGT-TGTTGGC-ACCCTT-
1 -TAAAGCCCACACAAGTCAG-TGGCAACCCTTC
* * *
1178209 TCAAAG-CC-TATAAGTCAGTAGC-ACCCTT-
1 T-AAAGCCCACACAAGTCAGTGGCAACCCTTC
* * *
1178237 TAAAG-CC-CACAAGTCAATGGCATCCTTTC
1 TAAAGCCCACACAAGTCAGTGGCAACCCTTC
* * *
1178266 -AAAG-CC-TACAAGTCAGTGGC-ATCCTTT
1 TAAAGCCCACACAAGTCAGTGGCAACCCTTC
*
1178293 TAAAACCCACACAAGTCAGTGGCAAACCCTTC
1 TAAAGCCCACACAAGTCAGTGGC-AACCCTTC
1178325 TAAAGCCCACACAAGT
1 TAAAGCCCACACAAGT
1178341 TGGTGTAATT
Statistics
Matches: 227, Mismatches: 38, Indels: 45
0.73 0.12 0.15
Matches are distributed among these distances:
27 19 0.08
28 40 0.18
29 6 0.03
30 22 0.10
31 47 0.21
32 89 0.39
33 4 0.02
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.22
Consensus pattern (31 bp):
TAAAGCCCACACAAGTCAGTGGCAACCCTTC
Found at i:1178542 original size:104 final size:105
Alignment explanation
Indices: 1178407--1178662 Score: 311
Period size: 104 Copynumber: 2.4 Consensus size: 105
1178397 TGTCAAACTG
*
1178407 TCTC-TTCCTAAGCTCAATGTTGCTGGCCTTGAATCAGCACATAGGCACATGTGT-CATCTTTAA
1 TCTCTTTCC-AAGCCCAATGTTGCTGGCCTTGAATCAGCACATAGGCA-ATGTGTCCATCTTTAA
*
1178470 GTCTAATATCGCTGGCCTTGAATCAGTA-ATCAATACTTTTA
64 GTCCAATATCGCTGGCCTTGAATCAGTATATCAATACTTTTA
* * * * *
1178511 TCTCTTTCCAAGCCCAATGTTGCTGGTCTTGAATCAGCACATTGGCATTTTTTCCATCTTTAAGT
1 TCTCTTTCCAAGCCCAATGTTGCTGGCCTTGAATCAGCACATAGGCAATGTGTCCATCTTTAAGT
* * *
1178576 CCAATATCGTTGGCCTTGAATCAGTATATTAGTACTTTTA
66 CCAATATCGCTGGCCTTGAATCAGTATATCAATACTTTTA
* * *** * * *
1178616 TCTCTTTCTAAGCCTAATGTCATTGGCCTTGAACCAACACATTGGCA
1 TCTCTTTCCAAGCCCAATGTTGCTGGCCTTGAATCAGCACATAGGCA
1178663 CCCTTATCAT
Statistics
Matches: 131, Mismatches: 18, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
103 3 0.02
104 74 0.56
105 54 0.41
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (105 bp):
TCTCTTTCCAAGCCCAATGTTGCTGGCCTTGAATCAGCACATAGGCAATGTGTCCATCTTTAAGT
CCAATATCGCTGGCCTTGAATCAGTATATCAATACTTTTA
Found at i:1178580 original size:52 final size:51
Alignment explanation
Indices: 1178428--1178735 Score: 187
Period size: 52 Copynumber: 5.9 Consensus size: 51
1178418 GCTCAATGTT
* * * * *
1178428 GCTGGCCTTGAATCAGCACATAGGCACATGTGTCATCTTTAAGTCTAATATC
1 GCTGGCCTTGAATCAGCACATTGGCA-TTTTATCATCTTTAAGTCCAATATC
* * * * * *
1178480 GCTGGCCTTGAATCAGTAATCAAT-AC-TTTTATC-TCTTTCCAAGCCCAATGTT
1 GCTGGCCTTGAATCAG-CA-CATTGGCATTTTATCATCTTT--AAGTCCAATATC
* *
1178532 GCTGGTCTTGAATCAGCACATTGGCATTTTTTCCATCTTTAAGTCCAATATC
1 GCTGGCCTTGAATCAGCACATTGGCATTTTAT-CATCTTTAAGTCCAATATC
* * * * * *
1178584 GTTGGCCTTGAATCAGTATATTAGTACTTTTATC-TCTTTCTAAG-CCTAATGTC
1 GCTGGCCTTGAATCAGCACATTGGCA-TTTTATCATC-TT-TAAGTCC-AATATC
** * * ** * **
1178637 ATTGGCCTTGAACCAACACATTGGCACCCTTATCATGTTTAAGTCCAACGTC
1 GCTGGCCTTGAATCAGCACATTGGCA-TTTTATCATCTTTAAGTCCAATATC
* ** *
1178689 GCTAGCCTTGAATCAGCACATTGGCACCTTATCAT-TTTAAGCCCAAT
1 GCTGGCCTTGAATCAGCACATTGGCATTTTATCATCTTTAAGTCCAAT
1178736 GTAGTGCCTT
Statistics
Matches: 197, Mismatches: 45, Indels: 30
0.72 0.17 0.11
Matches are distributed among these distances:
50 18 0.09
51 17 0.09
52 108 0.55
53 46 0.23
54 8 0.04
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.35
Consensus pattern (51 bp):
GCTGGCCTTGAATCAGCACATTGGCATTTTATCATCTTTAAGTCCAATATC
Found at i:1178657 original size:105 final size:104
Alignment explanation
Indices: 1178461--1178704 Score: 292
Period size: 105 Copynumber: 2.3 Consensus size: 104
1178451 GCACATGTGT
*
1178461 CATCTTTAAGTCTAATATCGCTGGCCTTGAATCAGTAATCAATACTTTTATCTCTTTCCAAGCCC
1 CATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGTAATCAATACTTTTATCTCTTTCCAAGCCC
** * * *
1178526 AATGTTGCTGGTCTTGAATCAGCACATTGGCATTTTTTC
66 AATGTCACTGGCCTTGAACCAACACATTGGCATTTTTTC
* * * *
1178565 CATCTTTAAGTCCAATATCGTTGGCCTTGAATCAGTATATTAGTACTTTTATCTCTTTCTAAGCC
1 CATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGTA-ATCAATACTTTTATCTCTTTCCAAGCC
* * ** *
1178630 TAATGTCATTGGCCTTGAACCAACACATTGGCACCCTTAT-
65 CAATGTCACTGGCCTTGAACCAACACATTGGCA-TTTTTTC
* ** *
1178670 CATGTTTAAGTCCAACGTCGCTAGCCTTGAATCAG
1 CATCTTTAAGTCCAATATCGCTGGCCTTGAATCAG
1178705 CACATTGGCA
Statistics
Matches: 118, Mismatches: 20, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
104 35 0.30
105 80 0.68
106 3 0.03
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (104 bp):
CATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGTAATCAATACTTTTATCTCTTTCCAAGCCC
AATGTCACTGGCCTTGAACCAACACATTGGCATTTTTTC
Found at i:1179008 original size:41 final size:41
Alignment explanation
Indices: 1178933--1179010 Score: 104
Period size: 41 Copynumber: 1.9 Consensus size: 41
1178923 TACCTATCGA
* *
1178933 CTATGTCCCCGATAAACTTCTTACTCCTTAGTGACCTGCGG
1 CTATGTCCCCGATAAACTTCCTACTCCTCAGTGACCTGCGG
* *
1178974 CTATGTCCCTGGTAAACTTCCTACTCC-CAGGTGACCT
1 CTATGTCCCCGATAAACTTCCTACTCCTCA-GTGACCT
1179011 ATCGGCTTAG
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 1 0.03
41 31 0.97
ACGTcount: A:0.19, C:0.33, G:0.17, T:0.31
Consensus pattern (41 bp):
CTATGTCCCCGATAAACTTCCTACTCCTCAGTGACCTGCGG
Found at i:1179598 original size:17 final size:18
Alignment explanation
Indices: 1179576--1179624 Score: 55
Period size: 17 Copynumber: 2.7 Consensus size: 18
1179566 ATTTTTTGAT
1179576 ATAAAATTAAAATAAT-A
1 ATAAAATTAAAATAATGA
* *
1179593 ATAAAATCAAAAAAATGA
1 ATAAAATTAAAATAATGA
*
1179611 AAAAAATTTAAAAT
1 ATAAAA-TTAAAAT
1179625 CAAAAACAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
17 14 0.56
18 6 0.24
19 5 0.20
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.24
Consensus pattern (18 bp):
ATAAAATTAAAATAATGA
Found at i:1179613 original size:26 final size:25
Alignment explanation
Indices: 1179578--1179630 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
1179568 TTTTTGATAT
* *
1179578 AAAATTAAAATAATAATAAAATCAAA
1 AAAATGAAAAAAAT-ATAAAATCAAA
*
1179604 AAAATGAAAAAAATTTAAAATCAAA
1 AAAATGAAAAAAATATAAAATCAAA
1179629 AA
1 AA
1179631 CAAAAAATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.74, C:0.04, G:0.02, T:0.21
Consensus pattern (25 bp):
AAAATGAAAAAAATATAAAATCAAA
Found at i:1179696 original size:20 final size:20
Alignment explanation
Indices: 1179653--1179689 Score: 67
Period size: 19 Copynumber: 1.9 Consensus size: 20
1179643 TATTTTAAAA
1179653 AAATAAAAAAATAAAAAATC
1 AAATAAAAAAATAAAAAATC
1179673 AAAT-AAAAAATAAAAAA
1 AAATAAAAAAATAAAAAA
1179690 GTGAAATGGC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.84, C:0.03, G:0.00, T:0.14
Consensus pattern (20 bp):
AAATAAAAAAATAAAAAATC
Found at i:1184998 original size:79 final size:78
Alignment explanation
Indices: 1184827--1184998 Score: 229
Period size: 78 Copynumber: 2.2 Consensus size: 78
1184817 AGATAAAAAT
* * *
1184827 AGGGTTGGAGTATCCCTAATGGTGAAAAATCGATGTTTTGGAAACAAACCGGGGTTGGAGTATCT
1 AGGGTTGGAGTATCCCCAATGGTGAAAAATCGATGTTTTAGAAACAAACCGAGGTTGGAGTATCT
*
1184892 TCTTAGAAATAAC
66 CCTTAGAAATAAC
* * * *
1184905 GGGGTTGGAGTATCCCCAATTGTGAAAAATTGATGTTTTAGAAATAAAGCCGAGGTTGGAGTATC
1 AGGGTTGGAGTATCCCCAATGGTGAAAAATCGATGTTTTAGAAACAAA-CCGAGGTTGGAGTATC
* *
1184970 -CCTTCGAAAATACC
65 TCCTTAG-AAATAAC
1184984 AGGGTTGGAGTATCC
1 AGGGTTGGAGTATCC
1184999 TCGATTATAG
Statistics
Matches: 81, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
78 46 0.57
79 35 0.43
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.28
Consensus pattern (78 bp):
AGGGTTGGAGTATCCCCAATGGTGAAAAATCGATGTTTTAGAAACAAACCGAGGTTGGAGTATCT
CCTTAGAAATAAC
Found at i:1185210 original size:10 final size:10
Alignment explanation
Indices: 1185192--1185221 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
1185182 TATTCAAAAT
1185192 AAAAAAAAGA
1 AAAAAAAAGA
*
1185202 AAGAAAAAGA
1 AAAAAAAAGA
1185212 AAAAAAAAGA
1 AAAAAAAAGA
1185222 GACATCATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (10 bp):
AAAAAAAAGA
Found at i:1186519 original size:17 final size:16
Alignment explanation
Indices: 1186497--1186539 Score: 59
Period size: 17 Copynumber: 2.6 Consensus size: 16
1186487 ATTTTTTTCT
1186497 TTATTTTTTAATTATTA
1 TTATTTTTTAATT-TTA
*
1186514 TTATTTTTTAATTTTT
1 TTATTTTTTAATTTTA
1186530 TTGATTTTTT
1 TT-ATTTTTT
1186540 TGATTTCTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 4 0.17
17 20 0.83
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.77
Consensus pattern (16 bp):
TTATTTTTTAATTTTA
Found at i:1186531 original size:9 final size:9
Alignment explanation
Indices: 1186500--1186565 Score: 50
Period size: 9 Copynumber: 7.7 Consensus size: 9
1186490 TTTTTCTTTA
1186500 TTTTTTAAT
1 TTTTTTAAT
*
1186509 TATTATT-A-
1 T-TTTTTAAT
1186517 TTTTTTAAT
1 TTTTTTAAT
*
1186526 TTTTTTGAT
1 TTTTTTAAT
*
1186535 TTTTTTGAT
1 TTTTTTAAT
* *
1186544 TTCTTTGA-
1 TTTTTTAAT
1186552 -TTTTTAAT
1 TTTTTTAAT
1186560 TTTTTT
1 TTTTTT
1186566 GTGTCAAAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
7 9 0.20
8 2 0.04
9 31 0.67
10 4 0.09
ACGTcount: A:0.18, C:0.02, G:0.05, T:0.76
Consensus pattern (9 bp):
TTTTTTAAT
Found at i:1187417 original size:62 final size:63
Alignment explanation
Indices: 1187296--1187559 Score: 265
Period size: 62 Copynumber: 4.3 Consensus size: 63
1187286 GACAGAGGCA
* * ** * *
1187296 CCAATATGCTAATTCAAGGCCAAAGACATCGGGCTT-AAAGATGAGAA-AACTGATAAAGGTG
1 CCAATATGCTGATTCAAGGCTAGCGATATTGGGCTTGAAAGATGAGAAGAACTGATAAAGGTG
* * * *
1187357 CCAATATGTTGATTCAAGGCTAGCGATATTAGGATTGAAAGATGAGAAGAAC-GACAAAGGTG
1 CCAATATGCTGATTCAAGGCTAGCGATATTGGGCTTGAAAGATGAGAAGAACTGATAAAGGTG
* * **
1187419 CCAATATGCTGATTCAAGGCTAGCGATATTGGGCTTGAAAGA-AAAAAGATTTGA-AAA-GTG
1 CCAATATGCTGATTCAAGGCTAGCGATATTGGGCTTGAAAGATGAGAAGAACTGATAAAGGTG
* * * * * * * * *
1187479 CCCATGTGTTGATTCAAGGCCAACAACATCGGGCTTG-AAGATGAG-ACAACTGATAAAGGTG
1 CCAATATGCTGATTCAAGGCTAGCGATATTGGGCTTGAAAGATGAGAAGAACTGATAAAGGTG
1187540 CCAATATGCTGATTCAAGGC
1 CCAATATGCTGATTCAAGGC
1187560 CAATGATACT
Statistics
Matches: 164, Mismatches: 33, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
59 9 0.05
60 36 0.22
61 55 0.34
62 61 0.37
63 3 0.02
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.22
Consensus pattern (63 bp):
CCAATATGCTGATTCAAGGCTAGCGATATTGGGCTTGAAAGATGAGAAGAACTGATAAAGGTG
Found at i:1187696 original size:32 final size:31
Alignment explanation
Indices: 1187649--1187750 Score: 102
Period size: 32 Copynumber: 3.4 Consensus size: 31
1187639 GGTTATGCGA
* *
1187649 GCTTTAGAAGGGTTGCCACCGACTTGTGTGG
1 GCTTTAGAAAGGTTGCCACCAACTTGTGTGG
* * *
1187680 GCTTTAAGAAAGGTTGCCACTAGCTTGAGTGG
1 GCTTT-AGAAAGGTTGCCACCAACTTGTGTGG
* *
1187712 GCTTTAG-AAGGGTGCCACTAAC-T-TGTGG
1 GCTTTAGAAAGGTTGCCACCAACTTGTGTGG
*
1187740 GCTTTTGAAAG
1 GCTTTAGAAAG
1187751 AATGCTACTA
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
28 10 0.17
29 4 0.07
30 13 0.22
31 7 0.12
32 26 0.43
ACGTcount: A:0.22, C:0.17, G:0.32, T:0.29
Consensus pattern (31 bp):
GCTTTAGAAAGGTTGCCACCAACTTGTGTGG
Found at i:1195657 original size:28 final size:28
Alignment explanation
Indices: 1187675--1195712 Score: 5974
Period size: 28 Copynumber: 286.1 Consensus size: 28
1187665 CACCGACTTG
*
1187675 TGTGGGCTTTAAGAAAGGTTGCCACT-AGCT
1 TGTGGGCTTTGA-AAAGG-TGCCACTGA-CT
* *
1187705 TGAGTGGGCTTT-AGAAGGGTGCCACTAACT
1 T--GTGGGCTTTGA-AAAGGTGCCACTGACT
* * *
1187735 TGTGGGCTTTTG-AAAGAATGCTACTAACT
1 TGTGGGC-TTTGAAAAG-GTGCCACTGACT
* * *
1187764 CGTGGGC-TTGAAAAAGGTGCCACTAACC
1 TGTGGGCTTTG-AAAAGGTGCCACTGACT
* *
1187792 CGTGGGCTTT-AAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
*
1187820 TGTGGGCTTTCAACGAA--TGCCACTGACT
1 TGTGGGCTTTGAA--AAGGTGCCACTGACT
**
1187848 TGTGGGCTTTGAATGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
1187876 TGTGGGCTTT-AGAAGGGTGGCACTGACT
1 TGTGGGCTTTGA-AAAGGTGCCACTGACT
*
1187904 TATGGGCTTTGAAAAGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
** * * * *
1187932 CATGGGCTCTAAAAAGGTACCACTAACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
1187960 CGTGGGCTTT-AAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAA-GGTGCCACTGACT
*
1187988 TGTGGGCTTT-AAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAA-GGTGCCACTGACT
*
1188016 TATGGGCTTTGAAAAGGTGCCAC---CT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
1188041 CGTGGGCTTTGGGAAAA--TGCCACTAACT
1 TGTGGGCTTT--GAAAAGGTGCCACTGACT
** * *
1188069 CATGGG-TATT-AGAAAGATGCCACTGATT
1 TGTGGGCT-TTGA-AAAGGTGCCACTGACT
* *
1188097 TGTGGGCTTAGAAAGGGTGCCACTGAC-
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
1188124 TGATGGGCTTTGAAAATGTGCCATTGACT
1 TG-TGGGCTTTGAAAAGGTGCCACTGACT
*
1188153 CGTGGGCTTT-AAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAA-GGTGCCACTGACT
1188181 TGTGGGCTTT-AAAAGGTTGCCACTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
*
1188209 TGTGTTGGCTTTGAGAAATGTTGCCACT-AGCTT
1 TGTG--GGCTTTGA-AAA-GGTGCCACTGA-C-T
* *
1188242 ATGTGGGCTTTGGAAGGGTGCCA-TCGACT
1 -TGTGGGCTTTGAAAAGGTGCCACT-GACT
* *
1188271 TGTGGGATTTTG-AAAGGATGCCACTAACT
1 TGTGGG-CTTTGAAAAGG-TGCCACTGACT
** * * *
1188300 CATGGGCTTTGAAAAAGTGCCAGTAACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
*
1188328 CGTGGGCTTT-AAAAGGATGCCA-TGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* ** *
1188355 TATGGGCTTT-AAGTGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* * *
1188383 TGTGGGCTTTG-AACGAGTGCCACTAACC
1 TGTGGGCTTTGAAAAG-GTGCCACTGACT
*
1188411 TGTGGGCTTTG-GAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
** * *
1188439 CATGGGCTTTGAAAGGGTGCCATTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* * *
1188467 CGTAGGCTTT-AAAAGGATGCCATTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* *
1188495 TGTGGGCTTT-AAGTAGATGCCACT-ACT
1 TGTGGGCTTTGAA-AAGGTGCCACTGACT
**
1188522 TGTGGGCTTTGAATGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* * **
1188550 TGTGGGCTTTGAACAGGTGCCATTGGGT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
*
1188578 TGTGGGCTTTGGAAAGGTGCCACTGA-T
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
*
1188605 TCGTGGGCTTTGAAAGGGTGCCACT-AGCT
1 T-GTGGGCTTTGAAAAGGTGCCACTGA-CT
* * *
1188634 TATGGGCTTTGGAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
1188662 CGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
1188690 CGTGGGCTTT-AAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAA-GGTGCCACTGACT
1188718 TGTGGGCTTT-AAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
**
1188746 CATGGGCTTT-AAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAA-GGTGCCACTGACT
* *
1188774 CGTGGGCTTT-AAAAGGGTTCCACTGACT
1 TGTGGGCTTTGAAAA-GGTGCCACTGACT
* * *
1188802 CGTGAGCTTT-AAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
*
1188830 TGTGGGCTTT-AAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
*
1188858 TATGGGCTTTGAAAAGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
1188886 TGTGGGCTTTG-GAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
** * * *
1188914 CATGGGCATT-AGAAGGATGTCACTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* * * * *
1188942 TGTAGGCTTAGAAAGGGTGGCATTGA-T
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
1188969 TGATGGGCTTTGAAAAGGTGCCAC---CT
1 TG-TGGGCTTTGAAAAGGTGCCACTGACT
* *
1188995 CGTGGGCTTTGGGAAAA--TGCCACTAACT
1 TGTGGGCTTT--GAAAAGGTGCCACTGACT
** * *
1189023 CATGGG-TATT-AGAAAGATGCCACTGATT
1 TGTGGGCT-TTGA-AAAGGTGCCACTGACT
* * *
1189051 TGTGGGCTTAGAAAGGGTGCCACTAAC-
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
1189078 TGATGGGCTTTGAAAATGTGCCATTGACT
1 TG-TGGGCTTTGAAAAGGTGCCACTGACT
*
1189107 CGTGGGCTTT-AAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAA-GGTGCCACTGACT
1189135 TGTGGGCTTT-AAAAGGTTGCCACTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
*
1189163 TGTGTTGGCTTTGAGAAATGTTGCCACT-AGCTT
1 TGTG--GGCTTTGA-AAA-GGTGCCACTGA-C-T
* *
1189196 ATGTGGGCTTTGGAAGGGTGCCA-TCGACT
1 -TGTGGGCTTTGAAAAGGTGCCACT-GACT
* *
1189225 TGTGGGATTTTG-AAAGGATGCCACTAACT
1 TGTGGG-CTTTGAAAAGG-TGCCACTGACT
** * * *
1189254 CATGGGCTTTGAAAAAGTGCCAGTAACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
*
1189282 CGTGGGCTTT-AAAAGGATGCCA-TGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* ** *
1189309 TATGGGCTTT-AAGTGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* * *
1189337 TGTGGGCTTTG-AACGAGTGCCACTAACC
1 TGTGGGCTTTGAAAAG-GTGCCACTGACT
* *
1189365 TGTGGGCTTTGGAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* * *
1189393 TATGGGCTTTGAAAGGGTGCCATTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* * *
1189421 CGTAGGCTTT-AAAAGGATGCCATTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* *
1189449 TGTGGGCTTT-AAGTAGATGCCACT-ACT
1 TGTGGGCTTTGAA-AAGGTGCCACTGACT
**
1189476 TGTGGGCTTTGAATGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* * **
1189504 TGTGGGCTTTGAACAGGTGCCATTGGGT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
*
1189532 TGTGGGCTTTGGAAAGGTGCCACTGA-T
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
*
1189559 TCGTGGGCTTTGAAAGGGTGCCACT-AGCT
1 T-GTGGGCTTTGAAAAGGTGCCACTGA-CT
* * *
1189588 TATGGGCTTTGGAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
1189616 CGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
1189644 CGTGGGCTTT-AAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAA-GGTGCCACTGACT
1189672 TGTGGGCTTT-AAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
**
1189700 CATGGGCTTT-AAAACGGTGCCACTGACT
1 TGTGGGCTTTGAAAA-GGTGCCACTGACT
* *
1189728 CGTGGGCTTT-AAAAGGGTTCCACTGACT
1 TGTGGGCTTTGAAAA-GGTGCCACTGACT
* * *
1189756 CGTGAGCTTT-AAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
*
1189784 TGTGGGCTTT-AAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
*
1189812 TATGGGCTTTGAAAAGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
1189840 TGTGGGCTTTG-GAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
** * * *
1189868 CATGGGCATT-AGAAGGATGTCACTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* * * * *
1189896 TGTAGGCTTAGAAAGGGTGGCATTGA-T
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
1189923 TGATGGGCTTTGAAAAGGTGCCAC---CT
1 TG-TGGGCTTTGAAAAGGTGCCACTGACT
* *
1189949 CGTGGGCTTTGGGAAAA--TGCCACTAACT
1 TGTGGGCTTT--GAAAAGGTGCCACTGACT
** * *
1189977 CATGGG-TATT-AGAAAGATGCCACTGATT
1 TGTGGGCT-TTGA-AAAGGTGCCACTGACT
* * *
1190005 TGTGGGCTTAGAAAGGGTGCCACTAAC-
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
1190032 TGATGGGCTTTGAAAATGTGCCATTGACT
1 TG-TGGGCTTTGAAAAGGTGCCACTGACT
*
1190061 CGTGGGCTTT-AAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAA-GGTGCCACTGACT
1190089 TGTGGGCTTT-AAAAGGTTGCCACTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
*
1190117 TGTGTTGGCTTTGAGAAATGTTGCCACT-AGCTT
1 TGTG--GGCTTTGA-AAA-GGTGCCACTGA-C-T
* *
1190150 ATGTGGGCTTTGGAAGGGTGCCA-TCGACT
1 -TGTGGGCTTTGAAAAGGTGCCACT-GACT
* *
1190179 TGTGGGATTTTG-AAAGGATGCCACTAACT
1 TGTGGG-CTTTGAAAAGG-TGCCACTGACT
** * * *
1190208 CATGGGCTTTGAAAAAGTGCCAGTAACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
*
1190236 CGTGGGCTTT-AAAAGGATGCCA-TGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* ** *
1190263 TATGGGCTTT-AAGTGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* * *
1190291 TGTGGGCTTTG-AACGAGTGCCACTAACC
1 TGTGGGCTTTGAAAAG-GTGCCACTGACT
* *
1190319 TGTGGGCTTTGGAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
** * *
1190347 CATGGGCTTTGAAAGGGTGCCATTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* * *
1190375 CGTAGGCTTT-AAAAGGATGCCATTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* *
1190403 TGTGGGCTTT-AAGTAGATGCCACT-ACT
1 TGTGGGCTTTGAA-AAGGTGCCACTGACT
**
1190430 TGTGGGCTTTGAATGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* * **
1190458 TGTGGGCTTTGAACAGGTGCCATTGGGT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
*
1190486 TGTGGGCTTTGGAAAGGTGCCACTGA-T
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
*
1190513 TCGTGGGCTTTGAAAGGGTGCCACT-AGCT
1 T-GTGGGCTTTGAAAAGGTGCCACTGA-CT
* * *
1190542 TATGGGCTTTGGAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
1190570 CGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
1190598 CGTGGGCTTT-AAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAA-GGTGCCACTGACT
1190626 TGTGGGCTTT-AAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
**
1190654 CATGGGCTTT-AAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAA-GGTGCCACTGACT
* *
1190682 CGTGGGCTTT-AAAAGGGTTCCACTGACT
1 TGTGGGCTTTGAAAA-GGTGCCACTGACT
* * *
1190710 CGTGAGCTTT-AAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
*
1190738 TGTGGGCTTT-AAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
*
1190766 TATGGGCTTTGAAAAGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
1190794 TGTGGGCTTTG-GAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
** * * *
1190822 CATGGGCATT-AGAAGGATGTCACTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* * * * *
1190850 TGTAGGCTTAGAAAGGGTGGCATTGA-T
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
1190877 TGATGGGCTTTGAAAAGGTGCCAC---CT
1 TG-TGGGCTTTGAAAAGGTGCCACTGACT
* *
1190903 CGTGGGCTTTGGGAAAA--TGCCACTAACT
1 TGTGGGCTTT--GAAAAGGTGCCACTGACT
** * *
1190931 CATGGG-TATT-AGAAAGATGCCACTGATT
1 TGTGGGCT-TTGA-AAAGGTGCCACTGACT
* * *
1190959 TGTGGGCTTAGAAAGGGTGCCACTAAC-
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
1190986 TGATGGGCTTTGAAAATGTGCCATTGACT
1 TG-TGGGCTTTGAAAAGGTGCCACTGACT
*
1191015 CGTGGGCTTT-AAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAA-GGTGCCACTGACT
1191043 TGTGGGCTTT-AAAAGGTTGCCACTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
*
1191071 TGTGTTGGCTTTGAGAAATGTTGCCACT-AGCTT
1 TGTG--GGCTTTGA-AAA-GGTGCCACTGA-C-T
* *
1191104 ATGTGGGCTTTGGAAGGGTGCCA-TCGACT
1 -TGTGGGCTTTGAAAAGGTGCCACT-GACT
* *
1191133 TGTGGGATTTTG-AAAGGATGCCACTAACT
1 TGTGGG-CTTTGAAAAGG-TGCCACTGACT
** * * *
1191162 CATGGGCTTTGAAAAAGTGCCAGTAACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
*
1191190 CGTGGGCTTT-AAAAGGATGCCA-TGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* ** *
1191217 TATGGGCTTT-AAGTGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* * *
1191245 TGTGGGCTTTG-AACGAGTGCCACTAACC
1 TGTGGGCTTTGAAAAG-GTGCCACTGACT
* *
1191273 TGTGGGCTTTGGAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* * *
1191301 TATGGGCTTTGAAAGGGTGCCATTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* * *
1191329 CGTAGGCTTT-AAAAGGATGCCATTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* *
1191357 TGTGGGCTTT-AAGTAGATGCCACT-ACT
1 TGTGGGCTTTGAA-AAGGTGCCACTGACT
**
1191384 TGTGGGCTTTGAATGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* * **
1191412 TGTGGGCTTTGAACAGGTGCCATTGGGT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
*
1191440 TGTGGGCTTTGGAAAGGTGCCACTGA-T
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
*
1191467 TCGTGGGCTTTGAAAGGGTGCCACT-AGCT
1 T-GTGGGCTTTGAAAAGGTGCCACTGA-CT
* * *
1191496 TATGGGCTTTGGAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
1191524 CGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
1191552 CGTGGGCTTT-AAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAA-GGTGCCACTGACT
1191580 TGTGGGCTTT-AAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
**
1191608 CATGGGCTTT-AAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAA-GGTGCCACTGACT
* *
1191636 CGTGGGCTTT-AAAAGGGTTCCACTGACT
1 TGTGGGCTTTGAAAA-GGTGCCACTGACT
* * *
1191664 CGTGAGCTTT-AAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
*
1191692 TGTGGGCTTT-AAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
*
1191720 TATGGGCTTTGAAAAGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
1191748 TGTGGGCTTTG-GAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
** * * *
1191776 CATGGGCATT-AGAAGGATGTCACTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* * * * *
1191804 TGTAGGCTTAGAAAGGGTGGCATTGA-T
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
1191831 TGATGGGCTTTGAAAAGGTGCCAC---CT
1 TG-TGGGCTTTGAAAAGGTGCCACTGACT
* *
1191857 CGTGGGCTTTGGGAAAA--TGCCACTAACT
1 TGTGGGCTTT--GAAAAGGTGCCACTGACT
** * *
1191885 CATGGG-TATT-AGAAAGATGCCACTGATT
1 TGTGGGCT-TTGA-AAAGGTGCCACTGACT
* * *
1191913 TGTGGGCTTAGAAAGGGTGCCACTAAC-
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
1191940 TGATGGGCTTTGAAAATGTGCCATTGACT
1 TG-TGGGCTTTGAAAAGGTGCCACTGACT
*
1191969 CGTGGGCTTT-AAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAA-GGTGCCACTGACT
1191997 TGTGGGCTTT-AAAAGGTTGCCACTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
*
1192025 TGTGTTGGCTTTGAGAAATGTTGCCACT-AGCTT
1 TGTG--GGCTTTGA-AAA-GGTGCCACTGA-C-T
* *
1192058 ATGTGGGCTTTGGAAGGGTGCCA-TCGACT
1 -TGTGGGCTTTGAAAAGGTGCCACT-GACT
* *
1192087 TGTGGGATTTTG-AAAGGATGCCACTAACT
1 TGTGGG-CTTTGAAAAGG-TGCCACTGACT
** * * *
1192116 CATGGGCTTTGAAAAAGTGCCAGTAACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
*
1192144 CGTGGGCTTT-AAAAGGATGCCA-TGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* ** *
1192171 TATGGGCTTT-AAGTGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* * *
1192199 TGTGGGCTTTG-AACGAGTGCCACTAACC
1 TGTGGGCTTTGAAAAG-GTGCCACTGACT
* *
1192227 TGTGGGCTTTGGAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
** * *
1192255 CATGGGCTTTGAAAGGGTGCCATTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* * *
1192283 CGTAGGCTTT-AAAAGGATGCCATTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* *
1192311 TGTGGGCTTT-AAGTAGATGCCACT-ACT
1 TGTGGGCTTTGAA-AAGGTGCCACTGACT
**
1192338 TGTGGGCTTTGAATGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* * **
1192366 TGTGGGCTTTGAACAGGTGCCATTGGGT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
*
1192394 TGTGGGCTTTGGAAAGGTGCCACTGA-T
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
*
1192421 TCGTGGGCTTTGAAAGGGTGCCACT-AGCT
1 T-GTGGGCTTTGAAAAGGTGCCACTGA-CT
* * *
1192450 TATGGGCTTTGGAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
1192478 CGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
1192506 CGTGGGCTTT-AAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAA-GGTGCCACTGACT
1192534 TGTGGGCTTT-AAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
**
1192562 CATGGGCTTT-AAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAA-GGTGCCACTGACT
* *
1192590 CGTGGGCTTT-AAAAGGGTTCCACTGACT
1 TGTGGGCTTTGAAAA-GGTGCCACTGACT
* * *
1192618 CGTGAGCTTT-AAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
*
1192646 TGTGGGCTTT-AAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
*
1192674 TATGGGCTTTGAAAAGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
1192702 TGTGGGCTTTG-GAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
** * * *
1192730 CATGGGCATT-AGAAGGATGTCACTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* * * *
1192758 TGTGGGCTTAGAAAGGGTGGCATTGA-T
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
1192785 TGATGGGCTTTGAAAAGGTGCCAC---CT
1 TG-TGGGCTTTGAAAAGGTGCCACTGACT
* *
1192811 CGTGGGCTTTGGGAAAA--TGCCACTAACT
1 TGTGGGCTTT--GAAAAGGTGCCACTGACT
** * *
1192839 CATGGG-TATT-AGAAAGATGCCACTGATT
1 TGTGGGCT-TTGA-AAAGGTGCCACTGACT
* * *
1192867 TGTGGGCTTAGAAAGGGTGCCACTAAC-
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
1192894 TGATGGGCTTTGAAAATGTGCCATTGACT
1 TG-TGGGCTTTGAAAAGGTGCCACTGACT
*
1192923 CGTGGGCTTT-AAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAA-GGTGCCACTGACT
1192951 TGTGGGCTTT-AAAAGGTTGCCACTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
*
1192979 TGTGTTGGCTTTGAGAAATGTTGCCACT-AGCTT
1 TGTG--GGCTTTGA-AAA-GGTGCCACTGA-C-T
* *
1193012 ATGTGGGCTTTGGAAGGGTGCCA-TCGACT
1 -TGTGGGCTTTGAAAAGGTGCCACT-GACT
* *
1193041 TGTGGGATTTTG-AAAGGATGCCACTAACT
1 TGTGGG-CTTTGAAAAGG-TGCCACTGACT
** * * *
1193070 CATGGGCTTTGAAAAAGTGCCAGTAACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
*
1193098 CGTGGGCTTT-AAAAGGATGCCA-TGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* ** *
1193125 TATGGGCTTT-AAGTGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* * *
1193153 TGTGGGCTTTG-AACGAGTGCCACTAACC
1 TGTGGGCTTTGAAAAG-GTGCCACTGACT
* *
1193181 TGTGGGCTTTGGAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
** * *
1193209 CATGGGCTTTGAAAGGGTGCCATTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* * *
1193237 CGTAGGCTTT-AAAAGGATGCCATTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* *
1193265 TGTGGGCTTT-AAGTAGATGCCACT-ACT
1 TGTGGGCTTTGAA-AAGGTGCCACTGACT
**
1193292 TGTGGGCTTTGAATGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* * **
1193320 TGTGGGCTTTGAACAGGTGCCATTGGGT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
*
1193348 TGTGGGCTTTGGAAAGGTGCCACTGA-T
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
*
1193375 TCGTGGGCTTTGAAAGGGTGCCACT-AGCT
1 T-GTGGGCTTTGAAAAGGTGCCACTGA-CT
* * *
1193404 TATGGGCTTTGGAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
1193432 CGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
1193460 CGTGGGCTTT-AAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAA-GGTGCCACTGACT
1193488 TGTGGGCTTT-AAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
**
1193516 CATGGGCTTT-AAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAA-GGTGCCACTGACT
* *
1193544 CGTGGGCTTT-AAAAGGGTTCCACTGACT
1 TGTGGGCTTTGAAAA-GGTGCCACTGACT
* * *
1193572 CGTGAGCTTT-AAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
*
1193600 TGTGGGCTTT-AAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
*
1193628 TATGGGCTTTGAAAAGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
1193656 TGTGGGCTTTG-GAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
** * * *
1193684 CATGGGCATT-AGAAGGATGTCACTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* * * * *
1193712 TGTAGGCTTAGAAAGGGTGGCATTGA-T
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
1193739 TGATGGGCTTTGAAAAGGTGCCAC---CT
1 TG-TGGGCTTTGAAAAGGTGCCACTGACT
* *
1193765 CGTGGGCTTTGGGAAAA--TGCCACTAACT
1 TGTGGGCTTT--GAAAAGGTGCCACTGACT
** * *
1193793 CATGGG-TATT-AGAAAGATGCCACTGATT
1 TGTGGGCT-TTGA-AAAGGTGCCACTGACT
* * *
1193821 TGTGGGCTTAGAAAGGGTGCCACTAAC-
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
1193848 TGATGGGCTTTGAAAATGTGCCATTGACT
1 TG-TGGGCTTTGAAAAGGTGCCACTGACT
*
1193877 CGTGGGCTTT-AAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAA-GGTGCCACTGACT
1193905 TGTGGGCTTT-AAAAGGTTGCCACTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
*
1193933 TGTGTTGGCTTTGAGAAATGTTGCCACT-AGCTT
1 TGTG--GGCTTTGA-AAA-GGTGCCACTGA-C-T
* *
1193966 ATGTGGGCTTTGGAAGGGTGCCA-TCGACT
1 -TGTGGGCTTTGAAAAGGTGCCACT-GACT
* *
1193995 TGTGGGATTTTG-AAAGGATGCCACTAACT
1 TGTGGG-CTTTGAAAAGG-TGCCACTGACT
** * * *
1194024 CATGGGCTTTGAAAAAGTGCCAGTAACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
*
1194052 CGTGGGCTTT-AAAAGGATGCCA-TGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* ** *
1194079 TATGGGCTTT-AAGTGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* * *
1194107 TGT-GGCTTTG-AACGAGTGCCACTAACC
1 TGTGGGCTTTGAAAAG-GTGCCACTGACT
* *
1194134 TGTGGGCTTTGGAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
** * *
1194162 CATGGGCTTTGAAAGGGTGCCATTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
1194190 CGTGGGCTTT-AAAAGGATGCCATTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* *
1194218 TGTGGGCTTT-AAGTAGATGCCACT-ACT
1 TGTGGGCTTTGAA-AAGGTGCCACTGACT
**
1194245 TGTGGGCTTTGAATGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* * **
1194273 TGTGGGCTTTGAACAGGTGCCATTGGGT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
*
1194301 TGTGGGCTTTGGAAAGGTGCCACTGA-T
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
*
1194328 TCGTGGGCTTTGAAAGGGTGCCACT-AGCT
1 T-GTGGGCTTTGAAAAGGTGCCACTGA-CT
* * *
1194357 TATGGGCTTTGGAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
1194385 CGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
1194413 CGTGGGCTTT-AAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAA-GGTGCCACTGACT
1194441 TGTGGGCTTT-AAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
** *
1194469 CATGGGCTTT-AAAAGGGTGCCAGTGACT
1 TGTGGGCTTTGAAAA-GGTGCCACTGACT
*
1194497 CGTGGGCTTT-AAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAA-GGTGCCACTGACT
* * *
1194525 CGTGAGCTTT-AAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
*
1194553 TGTGGGCTTT-AAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
*
1194581 TATGGGCTTTGAAAAGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
1194609 TGTGGGCTTTG-GAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
** * * *
1194637 CATGGGCATT-AGAAGGATGTCACTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* * * *
1194665 TGTGGGCTTAGAAAGGGTGGCATTGA-T
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
1194692 TGATGGGCTTTGAAAAGGTGCCAC---CT
1 TG-TGGGCTTTGAAAAGGTGCCACTGACT
* *
1194718 CGTGGGCTTTGGGAAAA--TGCCACTAACT
1 TGTGGGCTTT--GAAAAGGTGCCACTGACT
** * *
1194746 CATGGG-TATT-AGAAAGATGCCACTGATT
1 TGTGGGCT-TTGA-AAAGGTGCCACTGACT
* *
1194774 TGTGGGCTTAGAAAGGGTGCCACTGAC-
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
1194801 TGATGGGCTTTGAAAATGTGCCATTGACT
1 TG-TGGGCTTTGAAAAGGTGCCACTGACT
*
1194830 CGTGGGCTTT-AAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAA-GGTGCCACTGACT
1194858 TGTGGGCTTT-AAAAGGTTGCCACTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
*
1194886 TGTGTTGGCTTTGAGAAATGTTGCCACT-AGCTT
1 TGTG--GGCTTTGA-AAA-GGTGCCACTGA-C-T
* *
1194919 ATGTGGGCTTTGGAAGGGTGCCA-TCGACT
1 -TGTGGGCTTTGAAAAGGTGCCACT-GACT
* *
1194948 TGTGGGATTTTG-AAAGGATGCCACTAACT
1 TGTGGG-CTTTGAAAAGG-TGCCACTGACT
** * * *
1194977 CATGGGCTTTGAAAAAGTGCCAGTAACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
*
1195005 CGTGGGCTTT-AAAAGGATGCCA-TGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* ** *
1195032 TATGGGCTTT-AAGTGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* * *
1195060 TGTGGGCTTTG-AACGAGTGCCACTAACC
1 TGTGGGCTTTGAAAAG-GTGCCACTGACT
* *
1195088 TGTGGGCTTTGGAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
** * *
1195116 CATGGGCTTTGAAAGGGTGCCATTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
1195144 CGTGGGCTTT-AAAAGGATGCCATTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* * *
1195172 TATGGGCTTT-AAGTAGATGCCACT-ACT
1 TGTGGGCTTTGAA-AAGGTGCCACTGACT
**
1195199 TGTGGGCTTTGAATGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* * **
1195227 TGTGGGCTTTGAACAGGTGCCATTGGGT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
*
1195255 TGTGGGCTTTGGAAAGGTGCCACTGA-T
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
*
1195282 TCGTGGGCTTTGAAAGGGTGCCACT-AGCT
1 T-GTGGGCTTTGAAAAGGTGCCACTGA-CT
* * *
1195311 TATGGGCTTTGGAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
1195339 CGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
1195367 CGTGGGCTTT-AAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAA-GGTGCCACTGACT
1195395 TGTGGGCTTT-AAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
**
1195423 CATGGGCTTT-AAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAA-GGTGCCACTGACT
*
1195451 CGTGGGCTTT-AAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAA-GGTGCCACTGACT
* * *
1195479 CGTGAGCTTT-AAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
*
1195507 TGTGGGCTTT-AAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
*
1195535 TATGGGCTTTGAAAAGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
1195563 TGTGGGCTTTG-GAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
** * *
1195591 CATGGGCATT-AGAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* *
1195619 TGTGGGCTTTGAAAAGGCGCCACCGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* **
1195647 TGTTGGCTTTGGAAAAGGTTGCCACCAACT
1 TGTGGGCTTT-GAAAAGG-TGCCACTGACT
* **
1195677 TGTATGGGCTTTAGAGAAGGTTGCCACCAACT
1 TG--TGGGCTTT-GAAAAGG-TGCCACTGACT
1195709 TGTG
1 TGTG
1195713 TGGGCTTTAG
Statistics
Matches: 6639, Mismatches: 930, Indels: 878
0.79 0.11 0.10
Matches are distributed among these distances:
25 122 0.02
26 38 0.01
27 712 0.11
28 4947 0.75
29 407 0.06
30 136 0.02
31 49 0.01
32 180 0.03
33 16 0.00
34 32 0.00
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.28
Consensus pattern (28 bp):
TGTGGGCTTTGAAAAGGTGCCACTGACT
Found at i:1195657 original size:954 final size:954
Alignment explanation
Indices: 1188065--1195632 Score: 14976
Period size: 954 Copynumber: 7.9 Consensus size: 954
1188055 AAATGCCACT
*
1188065 AACTCATGGGTATTAGAAAGATGCCACTGATTTGTGGGCTTAGAAAGGGTGCCACTGACTGATGG
1 AACTCATGGGTATTAGAAAGATGCCACTGATTTGTGGGCTTAGAAAGGGTGCCACTAACTGATGG
1188130 GCTTTGAAAATGTGCCATTGACTCGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTTAAAA
66 GCTTTGAAAATGTGCCATTGACTCGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTTAAAA
1188195 GGTTGCCACTGACTTGTGTTGGCTTTGAGAAATGTTGCCACTAGCTTATGTGGGCTTTGGAAGGG
131 GGTTGCCACTGACTTGTGTTGGCTTTGAGAAATGTTGCCACTAGCTTATGTGGGCTTTGGAAGGG
1188260 TGCCATCGACTTGTGGGATTTTGAAAGGATGCCACTAACTCATGGGCTTTGAAAAAGTGCCAGTA
196 TGCCATCGACTTGTGGGATTTTGAAAGGATGCCACTAACTCATGGGCTTTGAAAAAGTGCCAGTA
1188325 ACTCGTGGGCTTTAAAAGGATGCCATGACTTATGGGCTTTAAGTGGATGCCACTAACTTGTGGGC
261 ACTCGTGGGCTTTAAAAGGATGCCATGACTTATGGGCTTTAAGTGGATGCCACTAACTTGTGGGC
*
1188390 TTTGAACGAGTGCCACTAACCTGTGGGCTTTGGAAGGATGCCACTGACTCATGGGCTTTGAAAGG
326 TTTGAACGAGTGCCACTAACCTGTGGGCTTTGGAAGGGTGCCACTGACTCATGGGCTTTGAAAGG
1188455 GTGCCATTGACTCGTAGGCTTTAAAAGGATGCCATTGACTTGTGGGCTTTAAGTAGATGCCACTA
391 GTGCCATTGACTCGTAGGCTTTAAAAGGATGCCATTGACTTGTGGGCTTTAAGTAGATGCCACTA
1188520 CTTGTGGGCTTTGAATGGGTGCCACTGACTTGTGGGCTTTGAACAGGTGCCATTGGGTTGTGGGC
456 CTTGTGGGCTTTGAATGGGTGCCACTGACTTGTGGGCTTTGAACAGGTGCCATTGGGTTGTGGGC
1188585 TTTGGAAAGGTGCCACTGATTCGTGGGCTTTGAAAGGGTGCCACTAGCTTATGGGCTTTGGAAGG
521 TTTGGAAAGGTGCCACTGATTCGTGGGCTTTGAAAGGGTGCCACTAGCTTATGGGCTTTGGAAGG
1188650 GTGCCACTGACTCGTGGGCTTTGAAAGGGTGCCACTGACTCGTGGGCTTTAAAAGGGTGCCACTA
586 GTGCCACTGACTCGTGGGCTTTGAAAGGGTGCCACTGACTCGTGGGCTTTAAAAGGGTGCCACTA
1188715 ACTTGTGGGCTTTAAAAGGATGCCACTGACTCATGGGCTTTAAAAGGGTGCCACTGACTCGTGGG
651 ACTTGTGGGCTTTAAAAGGATGCCACTGACTCATGGGCTTTAAAAGGGTGCCACTGACTCGTGGG
1188780 CTTTAAAAGGGTTCCACTGACTCGTGAGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTAAAAG
716 CTTTAAAAGGGTTCCACTGACTCGTGAGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTAAAAG
1188845 GATGCCACTAACTTATGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTGGAAGGATGCCACT
781 GATGCCACTAACTTATGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTGGAAGGATGCCACT
1188910 AACTCATGGGCATTAGAAGGATGTCACTGACTTGTAGGCTTAGAAAGGGTGGCATTGATTGATGG
846 AACTCATGGGCATTAGAAGGATGTCACTGACTTGTAGGCTTAGAAAGGGTGGCATTGATTGATGG
1188975 GCTTTGAAAAGGTGCCACCTCGTGGGCTTTGGGAAAATGCCACT
911 GCTTTGAAAAGGTGCCACCTCGTGGGCTTTGGGAAAATGCCACT
1189019 AACTCATGGGTATTAGAAAGATGCCACTGATTTGTGGGCTTAGAAAGGGTGCCACTAACTGATGG
1 AACTCATGGGTATTAGAAAGATGCCACTGATTTGTGGGCTTAGAAAGGGTGCCACTAACTGATGG
1189084 GCTTTGAAAATGTGCCATTGACTCGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTTAAAA
66 GCTTTGAAAATGTGCCATTGACTCGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTTAAAA
1189149 GGTTGCCACTGACTTGTGTTGGCTTTGAGAAATGTTGCCACTAGCTTATGTGGGCTTTGGAAGGG
131 GGTTGCCACTGACTTGTGTTGGCTTTGAGAAATGTTGCCACTAGCTTATGTGGGCTTTGGAAGGG
1189214 TGCCATCGACTTGTGGGATTTTGAAAGGATGCCACTAACTCATGGGCTTTGAAAAAGTGCCAGTA
196 TGCCATCGACTTGTGGGATTTTGAAAGGATGCCACTAACTCATGGGCTTTGAAAAAGTGCCAGTA
1189279 ACTCGTGGGCTTTAAAAGGATGCCATGACTTATGGGCTTTAAGTGGATGCCACTAACTTGTGGGC
261 ACTCGTGGGCTTTAAAAGGATGCCATGACTTATGGGCTTTAAGTGGATGCCACTAACTTGTGGGC
*
1189344 TTTGAACGAGTGCCACTAACCTGTGGGCTTTGGAAGGGTGCCACTGACTTATGGGCTTTGAAAGG
326 TTTGAACGAGTGCCACTAACCTGTGGGCTTTGGAAGGGTGCCACTGACTCATGGGCTTTGAAAGG
1189409 GTGCCATTGACTCGTAGGCTTTAAAAGGATGCCATTGACTTGTGGGCTTTAAGTAGATGCCACTA
391 GTGCCATTGACTCGTAGGCTTTAAAAGGATGCCATTGACTTGTGGGCTTTAAGTAGATGCCACTA
1189474 CTTGTGGGCTTTGAATGGGTGCCACTGACTTGTGGGCTTTGAACAGGTGCCATTGGGTTGTGGGC
456 CTTGTGGGCTTTGAATGGGTGCCACTGACTTGTGGGCTTTGAACAGGTGCCATTGGGTTGTGGGC
1189539 TTTGGAAAGGTGCCACTGATTCGTGGGCTTTGAAAGGGTGCCACTAGCTTATGGGCTTTGGAAGG
521 TTTGGAAAGGTGCCACTGATTCGTGGGCTTTGAAAGGGTGCCACTAGCTTATGGGCTTTGGAAGG
1189604 GTGCCACTGACTCGTGGGCTTTGAAAGGGTGCCACTGACTCGTGGGCTTTAAAAGGGTGCCACTA
586 GTGCCACTGACTCGTGGGCTTTGAAAGGGTGCCACTGACTCGTGGGCTTTAAAAGGGTGCCACTA
*
1189669 ACTTGTGGGCTTTAAAAGGATGCCACTGACTCATGGGCTTTAAAACGGTGCCACTGACTCGTGGG
651 ACTTGTGGGCTTTAAAAGGATGCCACTGACTCATGGGCTTTAAAAGGGTGCCACTGACTCGTGGG
1189734 CTTTAAAAGGGTTCCACTGACTCGTGAGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTAAAAG
716 CTTTAAAAGGGTTCCACTGACTCGTGAGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTAAAAG
1189799 GATGCCACTAACTTATGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTGGAAGGATGCCACT
781 GATGCCACTAACTTATGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTGGAAGGATGCCACT
1189864 AACTCATGGGCATTAGAAGGATGTCACTGACTTGTAGGCTTAGAAAGGGTGGCATTGATTGATGG
846 AACTCATGGGCATTAGAAGGATGTCACTGACTTGTAGGCTTAGAAAGGGTGGCATTGATTGATGG
1189929 GCTTTGAAAAGGTGCCACCTCGTGGGCTTTGGGAAAATGCCACT
911 GCTTTGAAAAGGTGCCACCTCGTGGGCTTTGGGAAAATGCCACT
1189973 AACTCATGGGTATTAGAAAGATGCCACTGATTTGTGGGCTTAGAAAGGGTGCCACTAACTGATGG
1 AACTCATGGGTATTAGAAAGATGCCACTGATTTGTGGGCTTAGAAAGGGTGCCACTAACTGATGG
1190038 GCTTTGAAAATGTGCCATTGACTCGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTTAAAA
66 GCTTTGAAAATGTGCCATTGACTCGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTTAAAA
1190103 GGTTGCCACTGACTTGTGTTGGCTTTGAGAAATGTTGCCACTAGCTTATGTGGGCTTTGGAAGGG
131 GGTTGCCACTGACTTGTGTTGGCTTTGAGAAATGTTGCCACTAGCTTATGTGGGCTTTGGAAGGG
1190168 TGCCATCGACTTGTGGGATTTTGAAAGGATGCCACTAACTCATGGGCTTTGAAAAAGTGCCAGTA
196 TGCCATCGACTTGTGGGATTTTGAAAGGATGCCACTAACTCATGGGCTTTGAAAAAGTGCCAGTA
1190233 ACTCGTGGGCTTTAAAAGGATGCCATGACTTATGGGCTTTAAGTGGATGCCACTAACTTGTGGGC
261 ACTCGTGGGCTTTAAAAGGATGCCATGACTTATGGGCTTTAAGTGGATGCCACTAACTTGTGGGC
1190298 TTTGAACGAGTGCCACTAACCTGTGGGCTTTGGAAGGGTGCCACTGACTCATGGGCTTTGAAAGG
326 TTTGAACGAGTGCCACTAACCTGTGGGCTTTGGAAGGGTGCCACTGACTCATGGGCTTTGAAAGG
1190363 GTGCCATTGACTCGTAGGCTTTAAAAGGATGCCATTGACTTGTGGGCTTTAAGTAGATGCCACTA
391 GTGCCATTGACTCGTAGGCTTTAAAAGGATGCCATTGACTTGTGGGCTTTAAGTAGATGCCACTA
1190428 CTTGTGGGCTTTGAATGGGTGCCACTGACTTGTGGGCTTTGAACAGGTGCCATTGGGTTGTGGGC
456 CTTGTGGGCTTTGAATGGGTGCCACTGACTTGTGGGCTTTGAACAGGTGCCATTGGGTTGTGGGC
1190493 TTTGGAAAGGTGCCACTGATTCGTGGGCTTTGAAAGGGTGCCACTAGCTTATGGGCTTTGGAAGG
521 TTTGGAAAGGTGCCACTGATTCGTGGGCTTTGAAAGGGTGCCACTAGCTTATGGGCTTTGGAAGG
1190558 GTGCCACTGACTCGTGGGCTTTGAAAGGGTGCCACTGACTCGTGGGCTTTAAAAGGGTGCCACTA
586 GTGCCACTGACTCGTGGGCTTTGAAAGGGTGCCACTGACTCGTGGGCTTTAAAAGGGTGCCACTA
1190623 ACTTGTGGGCTTTAAAAGGATGCCACTGACTCATGGGCTTTAAAAGGGTGCCACTGACTCGTGGG
651 ACTTGTGGGCTTTAAAAGGATGCCACTGACTCATGGGCTTTAAAAGGGTGCCACTGACTCGTGGG
1190688 CTTTAAAAGGGTTCCACTGACTCGTGAGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTAAAAG
716 CTTTAAAAGGGTTCCACTGACTCGTGAGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTAAAAG
1190753 GATGCCACTAACTTATGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTGGAAGGATGCCACT
781 GATGCCACTAACTTATGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTGGAAGGATGCCACT
1190818 AACTCATGGGCATTAGAAGGATGTCACTGACTTGTAGGCTTAGAAAGGGTGGCATTGATTGATGG
846 AACTCATGGGCATTAGAAGGATGTCACTGACTTGTAGGCTTAGAAAGGGTGGCATTGATTGATGG
1190883 GCTTTGAAAAGGTGCCACCTCGTGGGCTTTGGGAAAATGCCACT
911 GCTTTGAAAAGGTGCCACCTCGTGGGCTTTGGGAAAATGCCACT
1190927 AACTCATGGGTATTAGAAAGATGCCACTGATTTGTGGGCTTAGAAAGGGTGCCACTAACTGATGG
1 AACTCATGGGTATTAGAAAGATGCCACTGATTTGTGGGCTTAGAAAGGGTGCCACTAACTGATGG
1190992 GCTTTGAAAATGTGCCATTGACTCGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTTAAAA
66 GCTTTGAAAATGTGCCATTGACTCGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTTAAAA
1191057 GGTTGCCACTGACTTGTGTTGGCTTTGAGAAATGTTGCCACTAGCTTATGTGGGCTTTGGAAGGG
131 GGTTGCCACTGACTTGTGTTGGCTTTGAGAAATGTTGCCACTAGCTTATGTGGGCTTTGGAAGGG
1191122 TGCCATCGACTTGTGGGATTTTGAAAGGATGCCACTAACTCATGGGCTTTGAAAAAGTGCCAGTA
196 TGCCATCGACTTGTGGGATTTTGAAAGGATGCCACTAACTCATGGGCTTTGAAAAAGTGCCAGTA
1191187 ACTCGTGGGCTTTAAAAGGATGCCATGACTTATGGGCTTTAAGTGGATGCCACTAACTTGTGGGC
261 ACTCGTGGGCTTTAAAAGGATGCCATGACTTATGGGCTTTAAGTGGATGCCACTAACTTGTGGGC
*
1191252 TTTGAACGAGTGCCACTAACCTGTGGGCTTTGGAAGGGTGCCACTGACTTATGGGCTTTGAAAGG
326 TTTGAACGAGTGCCACTAACCTGTGGGCTTTGGAAGGGTGCCACTGACTCATGGGCTTTGAAAGG
1191317 GTGCCATTGACTCGTAGGCTTTAAAAGGATGCCATTGACTTGTGGGCTTTAAGTAGATGCCACTA
391 GTGCCATTGACTCGTAGGCTTTAAAAGGATGCCATTGACTTGTGGGCTTTAAGTAGATGCCACTA
1191382 CTTGTGGGCTTTGAATGGGTGCCACTGACTTGTGGGCTTTGAACAGGTGCCATTGGGTTGTGGGC
456 CTTGTGGGCTTTGAATGGGTGCCACTGACTTGTGGGCTTTGAACAGGTGCCATTGGGTTGTGGGC
1191447 TTTGGAAAGGTGCCACTGATTCGTGGGCTTTGAAAGGGTGCCACTAGCTTATGGGCTTTGGAAGG
521 TTTGGAAAGGTGCCACTGATTCGTGGGCTTTGAAAGGGTGCCACTAGCTTATGGGCTTTGGAAGG
1191512 GTGCCACTGACTCGTGGGCTTTGAAAGGGTGCCACTGACTCGTGGGCTTTAAAAGGGTGCCACTA
586 GTGCCACTGACTCGTGGGCTTTGAAAGGGTGCCACTGACTCGTGGGCTTTAAAAGGGTGCCACTA
1191577 ACTTGTGGGCTTTAAAAGGATGCCACTGACTCATGGGCTTTAAAAGGGTGCCACTGACTCGTGGG
651 ACTTGTGGGCTTTAAAAGGATGCCACTGACTCATGGGCTTTAAAAGGGTGCCACTGACTCGTGGG
1191642 CTTTAAAAGGGTTCCACTGACTCGTGAGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTAAAAG
716 CTTTAAAAGGGTTCCACTGACTCGTGAGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTAAAAG
1191707 GATGCCACTAACTTATGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTGGAAGGATGCCACT
781 GATGCCACTAACTTATGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTGGAAGGATGCCACT
1191772 AACTCATGGGCATTAGAAGGATGTCACTGACTTGTAGGCTTAGAAAGGGTGGCATTGATTGATGG
846 AACTCATGGGCATTAGAAGGATGTCACTGACTTGTAGGCTTAGAAAGGGTGGCATTGATTGATGG
1191837 GCTTTGAAAAGGTGCCACCTCGTGGGCTTTGGGAAAATGCCACT
911 GCTTTGAAAAGGTGCCACCTCGTGGGCTTTGGGAAAATGCCACT
1191881 AACTCATGGGTATTAGAAAGATGCCACTGATTTGTGGGCTTAGAAAGGGTGCCACTAACTGATGG
1 AACTCATGGGTATTAGAAAGATGCCACTGATTTGTGGGCTTAGAAAGGGTGCCACTAACTGATGG
1191946 GCTTTGAAAATGTGCCATTGACTCGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTTAAAA
66 GCTTTGAAAATGTGCCATTGACTCGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTTAAAA
1192011 GGTTGCCACTGACTTGTGTTGGCTTTGAGAAATGTTGCCACTAGCTTATGTGGGCTTTGGAAGGG
131 GGTTGCCACTGACTTGTGTTGGCTTTGAGAAATGTTGCCACTAGCTTATGTGGGCTTTGGAAGGG
1192076 TGCCATCGACTTGTGGGATTTTGAAAGGATGCCACTAACTCATGGGCTTTGAAAAAGTGCCAGTA
196 TGCCATCGACTTGTGGGATTTTGAAAGGATGCCACTAACTCATGGGCTTTGAAAAAGTGCCAGTA
1192141 ACTCGTGGGCTTTAAAAGGATGCCATGACTTATGGGCTTTAAGTGGATGCCACTAACTTGTGGGC
261 ACTCGTGGGCTTTAAAAGGATGCCATGACTTATGGGCTTTAAGTGGATGCCACTAACTTGTGGGC
1192206 TTTGAACGAGTGCCACTAACCTGTGGGCTTTGGAAGGGTGCCACTGACTCATGGGCTTTGAAAGG
326 TTTGAACGAGTGCCACTAACCTGTGGGCTTTGGAAGGGTGCCACTGACTCATGGGCTTTGAAAGG
1192271 GTGCCATTGACTCGTAGGCTTTAAAAGGATGCCATTGACTTGTGGGCTTTAAGTAGATGCCACTA
391 GTGCCATTGACTCGTAGGCTTTAAAAGGATGCCATTGACTTGTGGGCTTTAAGTAGATGCCACTA
1192336 CTTGTGGGCTTTGAATGGGTGCCACTGACTTGTGGGCTTTGAACAGGTGCCATTGGGTTGTGGGC
456 CTTGTGGGCTTTGAATGGGTGCCACTGACTTGTGGGCTTTGAACAGGTGCCATTGGGTTGTGGGC
1192401 TTTGGAAAGGTGCCACTGATTCGTGGGCTTTGAAAGGGTGCCACTAGCTTATGGGCTTTGGAAGG
521 TTTGGAAAGGTGCCACTGATTCGTGGGCTTTGAAAGGGTGCCACTAGCTTATGGGCTTTGGAAGG
1192466 GTGCCACTGACTCGTGGGCTTTGAAAGGGTGCCACTGACTCGTGGGCTTTAAAAGGGTGCCACTA
586 GTGCCACTGACTCGTGGGCTTTGAAAGGGTGCCACTGACTCGTGGGCTTTAAAAGGGTGCCACTA
1192531 ACTTGTGGGCTTTAAAAGGATGCCACTGACTCATGGGCTTTAAAAGGGTGCCACTGACTCGTGGG
651 ACTTGTGGGCTTTAAAAGGATGCCACTGACTCATGGGCTTTAAAAGGGTGCCACTGACTCGTGGG
1192596 CTTTAAAAGGGTTCCACTGACTCGTGAGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTAAAAG
716 CTTTAAAAGGGTTCCACTGACTCGTGAGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTAAAAG
1192661 GATGCCACTAACTTATGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTGGAAGGATGCCACT
781 GATGCCACTAACTTATGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTGGAAGGATGCCACT
*
1192726 AACTCATGGGCATTAGAAGGATGTCACTGACTTGTGGGCTTAGAAAGGGTGGCATTGATTGATGG
846 AACTCATGGGCATTAGAAGGATGTCACTGACTTGTAGGCTTAGAAAGGGTGGCATTGATTGATGG
1192791 GCTTTGAAAAGGTGCCACCTCGTGGGCTTTGGGAAAATGCCACT
911 GCTTTGAAAAGGTGCCACCTCGTGGGCTTTGGGAAAATGCCACT
1192835 AACTCATGGGTATTAGAAAGATGCCACTGATTTGTGGGCTTAGAAAGGGTGCCACTAACTGATGG
1 AACTCATGGGTATTAGAAAGATGCCACTGATTTGTGGGCTTAGAAAGGGTGCCACTAACTGATGG
1192900 GCTTTGAAAATGTGCCATTGACTCGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTTAAAA
66 GCTTTGAAAATGTGCCATTGACTCGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTTAAAA
1192965 GGTTGCCACTGACTTGTGTTGGCTTTGAGAAATGTTGCCACTAGCTTATGTGGGCTTTGGAAGGG
131 GGTTGCCACTGACTTGTGTTGGCTTTGAGAAATGTTGCCACTAGCTTATGTGGGCTTTGGAAGGG
1193030 TGCCATCGACTTGTGGGATTTTGAAAGGATGCCACTAACTCATGGGCTTTGAAAAAGTGCCAGTA
196 TGCCATCGACTTGTGGGATTTTGAAAGGATGCCACTAACTCATGGGCTTTGAAAAAGTGCCAGTA
1193095 ACTCGTGGGCTTTAAAAGGATGCCATGACTTATGGGCTTTAAGTGGATGCCACTAACTTGTGGGC
261 ACTCGTGGGCTTTAAAAGGATGCCATGACTTATGGGCTTTAAGTGGATGCCACTAACTTGTGGGC
1193160 TTTGAACGAGTGCCACTAACCTGTGGGCTTTGGAAGGGTGCCACTGACTCATGGGCTTTGAAAGG
326 TTTGAACGAGTGCCACTAACCTGTGGGCTTTGGAAGGGTGCCACTGACTCATGGGCTTTGAAAGG
1193225 GTGCCATTGACTCGTAGGCTTTAAAAGGATGCCATTGACTTGTGGGCTTTAAGTAGATGCCACTA
391 GTGCCATTGACTCGTAGGCTTTAAAAGGATGCCATTGACTTGTGGGCTTTAAGTAGATGCCACTA
1193290 CTTGTGGGCTTTGAATGGGTGCCACTGACTTGTGGGCTTTGAACAGGTGCCATTGGGTTGTGGGC
456 CTTGTGGGCTTTGAATGGGTGCCACTGACTTGTGGGCTTTGAACAGGTGCCATTGGGTTGTGGGC
1193355 TTTGGAAAGGTGCCACTGATTCGTGGGCTTTGAAAGGGTGCCACTAGCTTATGGGCTTTGGAAGG
521 TTTGGAAAGGTGCCACTGATTCGTGGGCTTTGAAAGGGTGCCACTAGCTTATGGGCTTTGGAAGG
1193420 GTGCCACTGACTCGTGGGCTTTGAAAGGGTGCCACTGACTCGTGGGCTTTAAAAGGGTGCCACTA
586 GTGCCACTGACTCGTGGGCTTTGAAAGGGTGCCACTGACTCGTGGGCTTTAAAAGGGTGCCACTA
1193485 ACTTGTGGGCTTTAAAAGGATGCCACTGACTCATGGGCTTTAAAAGGGTGCCACTGACTCGTGGG
651 ACTTGTGGGCTTTAAAAGGATGCCACTGACTCATGGGCTTTAAAAGGGTGCCACTGACTCGTGGG
1193550 CTTTAAAAGGGTTCCACTGACTCGTGAGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTAAAAG
716 CTTTAAAAGGGTTCCACTGACTCGTGAGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTAAAAG
1193615 GATGCCACTAACTTATGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTGGAAGGATGCCACT
781 GATGCCACTAACTTATGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTGGAAGGATGCCACT
1193680 AACTCATGGGCATTAGAAGGATGTCACTGACTTGTAGGCTTAGAAAGGGTGGCATTGATTGATGG
846 AACTCATGGGCATTAGAAGGATGTCACTGACTTGTAGGCTTAGAAAGGGTGGCATTGATTGATGG
1193745 GCTTTGAAAAGGTGCCACCTCGTGGGCTTTGGGAAAATGCCACT
911 GCTTTGAAAAGGTGCCACCTCGTGGGCTTTGGGAAAATGCCACT
1193789 AACTCATGGGTATTAGAAAGATGCCACTGATTTGTGGGCTTAGAAAGGGTGCCACTAACTGATGG
1 AACTCATGGGTATTAGAAAGATGCCACTGATTTGTGGGCTTAGAAAGGGTGCCACTAACTGATGG
1193854 GCTTTGAAAATGTGCCATTGACTCGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTTAAAA
66 GCTTTGAAAATGTGCCATTGACTCGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTTAAAA
1193919 GGTTGCCACTGACTTGTGTTGGCTTTGAGAAATGTTGCCACTAGCTTATGTGGGCTTTGGAAGGG
131 GGTTGCCACTGACTTGTGTTGGCTTTGAGAAATGTTGCCACTAGCTTATGTGGGCTTTGGAAGGG
1193984 TGCCATCGACTTGTGGGATTTTGAAAGGATGCCACTAACTCATGGGCTTTGAAAAAGTGCCAGTA
196 TGCCATCGACTTGTGGGATTTTGAAAGGATGCCACTAACTCATGGGCTTTGAAAAAGTGCCAGTA
1194049 ACTCGTGGGCTTTAAAAGGATGCCATGACTTATGGGCTTTAAGTGGATGCCACTAACTTGT-GGC
261 ACTCGTGGGCTTTAAAAGGATGCCATGACTTATGGGCTTTAAGTGGATGCCACTAACTTGTGGGC
1194113 TTTGAACGAGTGCCACTAACCTGTGGGCTTTGGAAGGGTGCCACTGACTCATGGGCTTTGAAAGG
326 TTTGAACGAGTGCCACTAACCTGTGGGCTTTGGAAGGGTGCCACTGACTCATGGGCTTTGAAAGG
*
1194178 GTGCCATTGACTCGTGGGCTTTAAAAGGATGCCATTGACTTGTGGGCTTTAAGTAGATGCCACTA
391 GTGCCATTGACTCGTAGGCTTTAAAAGGATGCCATTGACTTGTGGGCTTTAAGTAGATGCCACTA
1194243 CTTGTGGGCTTTGAATGGGTGCCACTGACTTGTGGGCTTTGAACAGGTGCCATTGGGTTGTGGGC
456 CTTGTGGGCTTTGAATGGGTGCCACTGACTTGTGGGCTTTGAACAGGTGCCATTGGGTTGTGGGC
1194308 TTTGGAAAGGTGCCACTGATTCGTGGGCTTTGAAAGGGTGCCACTAGCTTATGGGCTTTGGAAGG
521 TTTGGAAAGGTGCCACTGATTCGTGGGCTTTGAAAGGGTGCCACTAGCTTATGGGCTTTGGAAGG
1194373 GTGCCACTGACTCGTGGGCTTTGAAAGGGTGCCACTGACTCGTGGGCTTTAAAAGGGTGCCACTA
586 GTGCCACTGACTCGTGGGCTTTGAAAGGGTGCCACTGACTCGTGGGCTTTAAAAGGGTGCCACTA
*
1194438 ACTTGTGGGCTTTAAAAGGATGCCACTGACTCATGGGCTTTAAAAGGGTGCCAGTGACTCGTGGG
651 ACTTGTGGGCTTTAAAAGGATGCCACTGACTCATGGGCTTTAAAAGGGTGCCACTGACTCGTGGG
*
1194503 CTTTAAAAGGGTGCCACTGACTCGTGAGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTAAAAG
716 CTTTAAAAGGGTTCCACTGACTCGTGAGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTAAAAG
1194568 GATGCCACTAACTTATGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTGGAAGGATGCCACT
781 GATGCCACTAACTTATGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTGGAAGGATGCCACT
*
1194633 AACTCATGGGCATTAGAAGGATGTCACTGACTTGTGGGCTTAGAAAGGGTGGCATTGATTGATGG
846 AACTCATGGGCATTAGAAGGATGTCACTGACTTGTAGGCTTAGAAAGGGTGGCATTGATTGATGG
1194698 GCTTTGAAAAGGTGCCACCTCGTGGGCTTTGGGAAAATGCCACT
911 GCTTTGAAAAGGTGCCACCTCGTGGGCTTTGGGAAAATGCCACT
*
1194742 AACTCATGGGTATTAGAAAGATGCCACTGATTTGTGGGCTTAGAAAGGGTGCCACTGACTGATGG
1 AACTCATGGGTATTAGAAAGATGCCACTGATTTGTGGGCTTAGAAAGGGTGCCACTAACTGATGG
1194807 GCTTTGAAAATGTGCCATTGACTCGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTTAAAA
66 GCTTTGAAAATGTGCCATTGACTCGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTTAAAA
1194872 GGTTGCCACTGACTTGTGTTGGCTTTGAGAAATGTTGCCACTAGCTTATGTGGGCTTTGGAAGGG
131 GGTTGCCACTGACTTGTGTTGGCTTTGAGAAATGTTGCCACTAGCTTATGTGGGCTTTGGAAGGG
1194937 TGCCATCGACTTGTGGGATTTTGAAAGGATGCCACTAACTCATGGGCTTTGAAAAAGTGCCAGTA
196 TGCCATCGACTTGTGGGATTTTGAAAGGATGCCACTAACTCATGGGCTTTGAAAAAGTGCCAGTA
1195002 ACTCGTGGGCTTTAAAAGGATGCCATGACTTATGGGCTTTAAGTGGATGCCACTAACTTGTGGGC
261 ACTCGTGGGCTTTAAAAGGATGCCATGACTTATGGGCTTTAAGTGGATGCCACTAACTTGTGGGC
1195067 TTTGAACGAGTGCCACTAACCTGTGGGCTTTGGAAGGGTGCCACTGACTCATGGGCTTTGAAAGG
326 TTTGAACGAGTGCCACTAACCTGTGGGCTTTGGAAGGGTGCCACTGACTCATGGGCTTTGAAAGG
* *
1195132 GTGCCATTGACTCGTGGGCTTTAAAAGGATGCCATTGACTTATGGGCTTTAAGTAGATGCCACTA
391 GTGCCATTGACTCGTAGGCTTTAAAAGGATGCCATTGACTTGTGGGCTTTAAGTAGATGCCACTA
1195197 CTTGTGGGCTTTGAATGGGTGCCACTGACTTGTGGGCTTTGAACAGGTGCCATTGGGTTGTGGGC
456 CTTGTGGGCTTTGAATGGGTGCCACTGACTTGTGGGCTTTGAACAGGTGCCATTGGGTTGTGGGC
1195262 TTTGGAAAGGTGCCACTGATTCGTGGGCTTTGAAAGGGTGCCACTAGCTTATGGGCTTTGGAAGG
521 TTTGGAAAGGTGCCACTGATTCGTGGGCTTTGAAAGGGTGCCACTAGCTTATGGGCTTTGGAAGG
1195327 GTGCCACTGACTCGTGGGCTTTGAAAGGGTGCCACTGACTCGTGGGCTTTAAAAGGGTGCCACTA
586 GTGCCACTGACTCGTGGGCTTTGAAAGGGTGCCACTGACTCGTGGGCTTTAAAAGGGTGCCACTA
1195392 ACTTGTGGGCTTTAAAAGGATGCCACTGACTCATGGGCTTTAAAAGGGTGCCACTGACTCGTGGG
651 ACTTGTGGGCTTTAAAAGGATGCCACTGACTCATGGGCTTTAAAAGGGTGCCACTGACTCGTGGG
*
1195457 CTTTAAAAGGGTGCCACTGACTCGTGAGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTAAAAG
716 CTTTAAAAGGGTTCCACTGACTCGTGAGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTAAAAG
1195522 GATGCCACTAACTTATGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTGGAAGGATGCCACT
781 GATGCCACTAACTTATGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTGGAAGGATGCCACT
* * *
1195587 AACTCATGGGCATTAGAAGGATGCCACTGACTTGTGGGCTTTGAAA
846 AACTCATGGGCATTAGAAGGATGTCACTGACTTGTAGGCTTAGAAA
1195633 AGGCGCCACC
Statistics
Matches: 6594, Mismatches: 19, Indels: 2
1.00 0.00 0.00
Matches are distributed among these distances:
953 948 0.14
954 5646 0.86
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.29
Consensus pattern (954 bp):
AACTCATGGGTATTAGAAAGATGCCACTGATTTGTGGGCTTAGAAAGGGTGCCACTAACTGATGG
GCTTTGAAAATGTGCCATTGACTCGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTTAAAA
GGTTGCCACTGACTTGTGTTGGCTTTGAGAAATGTTGCCACTAGCTTATGTGGGCTTTGGAAGGG
TGCCATCGACTTGTGGGATTTTGAAAGGATGCCACTAACTCATGGGCTTTGAAAAAGTGCCAGTA
ACTCGTGGGCTTTAAAAGGATGCCATGACTTATGGGCTTTAAGTGGATGCCACTAACTTGTGGGC
TTTGAACGAGTGCCACTAACCTGTGGGCTTTGGAAGGGTGCCACTGACTCATGGGCTTTGAAAGG
GTGCCATTGACTCGTAGGCTTTAAAAGGATGCCATTGACTTGTGGGCTTTAAGTAGATGCCACTA
CTTGTGGGCTTTGAATGGGTGCCACTGACTTGTGGGCTTTGAACAGGTGCCATTGGGTTGTGGGC
TTTGGAAAGGTGCCACTGATTCGTGGGCTTTGAAAGGGTGCCACTAGCTTATGGGCTTTGGAAGG
GTGCCACTGACTCGTGGGCTTTGAAAGGGTGCCACTGACTCGTGGGCTTTAAAAGGGTGCCACTA
ACTTGTGGGCTTTAAAAGGATGCCACTGACTCATGGGCTTTAAAAGGGTGCCACTGACTCGTGGG
CTTTAAAAGGGTTCCACTGACTCGTGAGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTAAAAG
GATGCCACTAACTTATGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTGGAAGGATGCCACT
AACTCATGGGCATTAGAAGGATGTCACTGACTTGTAGGCTTAGAAAGGGTGGCATTGATTGATGG
GCTTTGAAAAGGTGCCACCTCGTGGGCTTTGGGAAAATGCCACT
Found at i:1195950 original size:28 final size:27
Alignment explanation
Indices: 1195903--1195960 Score: 71
Period size: 28 Copynumber: 2.1 Consensus size: 27
1195893 ATATAGCAAG
* *
1195903 TGCCACTGATTGTGGGCTTCAAAAAGA
1 TGCCACTAATTGTGGACTTCAAAAAGA
* *
1195930 TGCCACTAACTTGTGGACTTCGAAGAGA
1 TGCCACTAA-TTGTGGACTTCAAAAAGA
1195958 TGC
1 TGC
1195961 AACTGACTAG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
27 8 0.31
28 18 0.69
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.26
Consensus pattern (27 bp):
TGCCACTAATTGTGGACTTCAAAAAGA
Found at i:1209187 original size:79 final size:78
Alignment explanation
Indices: 1209031--1209193 Score: 229
Period size: 79 Copynumber: 2.1 Consensus size: 78
1209021 TCCCCAATGG
* * *
1209031 TGGAAAATCGATGTTTTGGAAATAAATCGAGGTTGGAGTATCCTTTCAGAAATAAAGGGGTTAGA
1 TGGAAAATCGATGTTTTAGAAATAAATCGAGGTTGGAGTATCCTCTCAGAAATAAAGGAGTTAGA
*
1209096 GTATCCCCGATTA
66 GTATCCACGATTA
* *
1209109 TGGAAAATCGATGTTTTAGAAATAAAGTCGAGGTTGGAGTATCCTCTC-GAAAATAATGGAGTTG
1 TGGAAAATCGATGTTTTAGAAATAAA-TCGAGGTTGGAGTATCCTCTCAG-AAATAAAGGAGTTA
*
1209173 GAGTATCCATGATTA
64 GAGTATCCACGATTA
*
1209188 TAGAAA
1 TGGAAA
1209194 TTTTGGTATT
Statistics
Matches: 75, Mismatches: 8, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
78 26 0.35
79 49 0.65
ACGTcount: A:0.35, C:0.10, G:0.25, T:0.29
Consensus pattern (78 bp):
TGGAAAATCGATGTTTTAGAAATAAATCGAGGTTGGAGTATCCTCTCAGAAATAAAGGAGTTAGA
GTATCCACGATTA
Found at i:1210735 original size:17 final size:17
Alignment explanation
Indices: 1210693--1210735 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
1210683 ATTTTTTTCT
1210693 TTATTTTTTAATTATTA
1 TTATTTTTTAATTATTA
* *
1210710 TTATATTTTAGTT-TTA
1 TTATTTTTTAATTATTA
1210726 TTGATTTTTT
1 TT-ATTTTTT
1210736 TATTTTTTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 5 0.23
17 17 0.77
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.72
Consensus pattern (17 bp):
TTATTTTTTAATTATTA
Found at i:1212479 original size:4 final size:4
Alignment explanation
Indices: 1212465--1212494 Score: 51
Period size: 4 Copynumber: 7.2 Consensus size: 4
1212455 ATAATTTTAT
1212465 ATAA GATAA ATAA ATAA ATAA ATAA ATAA A
1 ATAA -ATAA ATAA ATAA ATAA ATAA ATAA A
1212495 AATTTATGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 21 0.84
5 4 0.16
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.23
Consensus pattern (4 bp):
ATAA
Found at i:1213225 original size:17 final size:18
Alignment explanation
Indices: 1213205--1213241 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
1213195 ATTTATACAT
1213205 AATTCA-AA-TTCTTATAA
1 AATTCACAATTTCTTA-AA
1213222 AATTCACAATTTCTTAAA
1 AATTCACAATTTCTTAAA
1213240 AA
1 AA
1213242 AATATTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.33
18 6 0.33
19 6 0.33
ACGTcount: A:0.49, C:0.14, G:0.00, T:0.38
Consensus pattern (18 bp):
AATTCACAATTTCTTAAA
Found at i:1215546 original size:23 final size:22
Alignment explanation
Indices: 1215503--1215551 Score: 53
Period size: 23 Copynumber: 2.2 Consensus size: 22
1215493 GTAAAAAAGG
**
1215503 AAAATAAAAAACAAATTTACAC
1 AAAATAAAAAACAAAAGTACAC
* *
1215525 AAAATAAACACACAAAAGTACAT
1 AAAATAAA-AAACAAAAGTACAC
1215548 AAAA
1 AAAA
1215552 AGGAAGGACA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
22 8 0.36
23 14 0.64
ACGTcount: A:0.69, C:0.14, G:0.02, T:0.14
Consensus pattern (22 bp):
AAAATAAAAAACAAAAGTACAC
Found at i:1215821 original size:28 final size:28
Alignment explanation
Indices: 1215789--1215858 Score: 95
Period size: 28 Copynumber: 2.5 Consensus size: 28
1215779 AGATAAAATT
* * *
1215789 GGGTTGGAGTATCCCCTTAAAAATAATG
1 GGGTTAGAGTATCCCCTCAAAAATAACG
1215817 GGGTTAGAGTATCCCCTCAAAAATAACG
1 GGGTTAGAGTATCCCCTCAAAAATAACG
* *
1215845 AGGTTCGAGTATCC
1 GGGTTAGAGTATCC
1215859 TCGATTTTGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (28 bp):
GGGTTAGAGTATCCCCTCAAAAATAACG
Found at i:1215909 original size:49 final size:51
Alignment explanation
Indices: 1215851--1215958 Score: 150
Period size: 49 Copynumber: 2.2 Consensus size: 51
1215841 AACGAGGTTC
* *
1215851 GAGTATCCTCGATTTTGGAAAATCGATGTTTT-GAAATAAAA-CTAGGATTG
1 GAGTATCCTCGATTGTGAAAAATCGATGTTTTAGAAATAAAATC-AGGATTG
* *
1215901 G-GTATCCTCGATTGTGAAAAATTGATGTTTTAGAAATAAAATCAGGGTTG
1 GAGTATCCTCGATTGTGAAAAATCGATGTTTTAGAAATAAAATCAGGATTG
1215951 GAGTATCC
1 GAGTATCC
1215959 CCTTGGAAAT
Statistics
Matches: 51, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
49 27 0.53
50 17 0.33
51 7 0.14
ACGTcount: A:0.33, C:0.10, G:0.23, T:0.33
Consensus pattern (51 bp):
GAGTATCCTCGATTGTGAAAAATCGATGTTTTAGAAATAAAATCAGGATTG
Found at i:1216038 original size:50 final size:51
Alignment explanation
Indices: 1215984--1216079 Score: 149
Period size: 50 Copynumber: 1.9 Consensus size: 51
1215974 GGTTGGACTA
** *
1215984 TATGAAAAATTGGTGTTTTGGAAA-CAAACTGAGGTTGGAGTATCCTTGAT
1 TATGAAAAATCAGTGTTTTGGAAATAAAACTGAGGTTGGAGTATCCTTGAT
*
1216034 TATGAAAAATCAGTGTTTTGGAAATAAAACTGGGGTTGGAGTATCC
1 TATGAAAAATCAGTGTTTTGGAAATAAAACTGAGGTTGGAGTATCC
1216080 CTTTAGAAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
50 22 0.54
51 19 0.46
ACGTcount: A:0.33, C:0.08, G:0.26, T:0.32
Consensus pattern (51 bp):
TATGAAAAATCAGTGTTTTGGAAATAAAACTGAGGTTGGAGTATCCTTGAT
Found at i:1216165 original size:51 final size:51
Alignment explanation
Indices: 1216080--1216211 Score: 162
Period size: 51 Copynumber: 2.6 Consensus size: 51
1216070 TGGAGTATCC
* ***
1216080 CTTTAGAAAT--AA-CGGGGTTGGAGTATCCCCGATTATGGAAAATTGGTG
1 CTTTAGAAATAAAATCGGGGTTGGAGTATCCCCGATTATGAAAAATCAATG
* * **
1216128 CTTTGGAAATAAAATCGGGGTTGGAGTATTCTTGATTATGAAAAATCAATG
1 CTTTAGAAATAAAATCGGGGTTGGAGTATCCCCGATTATGAAAAATCAATG
*
1216179 TTTTAGAAATAAAATCGGGGTTGGAGTATCCCC
1 CTTTAGAAATAAAATCGGGGTTGGAGTATCCCC
1216212 TTGGAAATAA
Statistics
Matches: 68, Mismatches: 13, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
48 9 0.13
50 2 0.03
51 57 0.84
ACGTcount: A:0.32, C:0.11, G:0.26, T:0.31
Consensus pattern (51 bp):
CTTTAGAAATAAAATCGGGGTTGGAGTATCCCCGATTATGAAAAATCAATG
Found at i:1216220 original size:130 final size:129
Alignment explanation
Indices: 1215816--1216288 Score: 529
Period size: 130 Copynumber: 3.7 Consensus size: 129
1215806 TAAAAATAAT
* * * * * * * *
1215816 GGGGTTAGAGTATCCCCTCAAAAATAACGAGGTTCGAGTATCCTCGATTTTGGAAAATCGATGTT
1 GGGGTTGGAGTATCCCCTTAGAAATAACGGGGTT-GAGTATCCCCGATTATGGAAAATTGGTGTT
* * * **
1215881 TT-GAAATAAAA-CTAGGATTGG-GTATCCTCGATTGTGAAAAATTGATGTTTTAGAAATAAAAT
65 TTGGAAATAAAATC-AGGGTTGGAGTATCCTTGATTATGAAAAATCAATGTTTTAGAAATAAAAT
1215943 C
129 C
* * * * *
1215944 AGGGTTGGAGTATCCCCTTGGAAATAACAGGGTTG-G-A----CTA-TATGAAAAATTGGTGTTT
1 GGGGTTGGAGTATCCCCTTAGAAATAACGGGGTTGAGTATCCCCGATTATGGAAAATTGGTGTTT
* * * * *
1216002 TGGAAACAAACTGA-GGTTGGAGTATCCTTGATTATGAAAAATCAGTGTTTTGGAAATAAAA-C
66 TGGAAATAAAATCAGGGTTGGAGTATCCTTGATTATGAAAAATCAATGTTTTAGAAATAAAATC
* *
1216064 TGGGGTTGGAGTATCCCTTTAGAAATAACGGGGTTGGAGTATCCCCGATTATGGAAAATTGGTGC
1 -GGGGTTGGAGTATCCCCTTAGAAATAACGGGGTT-GAGTATCCCCGATTATGGAAAATTGGTGT
* *
1216129 TTTGGAAATAAAATCGGGGTTGGAGTATTCTTGATTATGAAAAATCAATGTTTTAGAAATAAAAT
64 TTTGGAAATAAAATCAGGGTTGGAGTATCCTTGATTATGAAAAATCAATGTTTTAGAAATAAAAT
1216194 C
129 C
* * *
1216195 GGGGTTGGAGTATCCCCTTGGAAATAACGGAGTTAGAGTATCCCCGATTGTGGAAAATTGGTGTT
1 GGGGTTGGAGTATCCCCTTAGAAATAACGGGGTT-GAGTATCCCCGATTATGGAAAATTGGTGTT
* *
1216260 TTAGAAATAAAACCAGGGTTGGAGTATCC
65 TTGGAAATAAAATCAGGGTTGGAGTATCC
1216289 CCTTAAAAAT
Statistics
Matches: 285, Mismatches: 46, Indels: 26
0.80 0.13 0.07
Matches are distributed among these distances:
120 21 0.07
121 74 0.26
122 1 0.00
123 1 0.00
124 1 0.00
125 1 0.00
126 1 0.00
127 1 0.00
128 29 0.10
129 26 0.09
130 128 0.45
131 1 0.00
ACGTcount: A:0.33, C:0.11, G:0.26, T:0.30
Consensus pattern (129 bp):
GGGGTTGGAGTATCCCCTTAGAAATAACGGGGTTGAGTATCCCCGATTATGGAAAATTGGTGTTT
TGGAAATAAAATCAGGGTTGGAGTATCCTTGATTATGAAAAATCAATGTTTTAGAAATAAAATC
Found at i:1216234 original size:79 final size:79
Alignment explanation
Indices: 1216161--1216367 Score: 288
Period size: 79 Copynumber: 2.6 Consensus size: 79
1216151 GAGTATTCTT
* * **
1216161 GATTATGAAAAATCAATGTTTTAGAAATAAAATCGGGGTTGGAGTATCCCCTTGGAAATAACGGA
1 GATTATGAAAAATCGATGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTTAAAAATAACGGA
1216226 GTTAGAGTATCCCC
66 GTTAGAGTATCCCC
* * * * * *
1216240 GATTGTGGAAAATTGGTGTTTTAGAAATAAAACCAGGGTTGGAGTATCCCCTTAAAAATAACGGG
1 GATTATGAAAAATCGATGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTTAAAAATAACGGA
* *
1216305 GTTTGAATATCCCC
66 GTTAGAGTATCCCC
* *
1216319 GATTATGAAAAATCGATGTTTTGGAAATAAAACCGAGGTTGGAGTATCC
1 GATTATGAAAAATCGATGTTTTAGAAATAAAACCGGGGTTGGAGTATCC
1216368 TCGATTGCAA
Statistics
Matches: 109, Mismatches: 19, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
79 109 1.00
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.29
Consensus pattern (79 bp):
GATTATGAAAAATCGATGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTTAAAAATAACGGA
GTTAGAGTATCCCC
Found at i:1216281 original size:209 final size:207
Alignment explanation
Indices: 1216046--1216574 Score: 632
Period size: 209 Copynumber: 2.5 Consensus size: 207
1216036 TGAAAAATCA
* *
1216046 GTGTTTTGGAAATAAAACTGGGGTTGGAGTATCCCTTTAGAAATAACGGGGTTGGAGTATCCCCG
1 GTGTTTTAGAAATAAAAC-CGGGTTGGAGTATCCC-TTAGAAATAACGGGGTTGGAGTATCCCCG
* * * * **
1216111 ATTATGGAAAATTGGTGCTTTGGAAATAAAATCGGGGTTGGAGTATTCTTGATTATGAAAAATCA
64 ATTATGAAAAATTGGTGTTTTGGAAATAAAATCGGGGTTGGAGTATCCTCGATTACAAAAAATCA
* * * * *
1216176 ATGTTTTAGAAATAAAATCGGGGTTGGAGTATCCCCTTGGAAATAAC-GGAGTTAGAGTATCCCC
129 ATGTTTTAGAAATAAAATCAGGGTTGGAGTATCCACTTGAAAAAAACAAGA-TTAGAGTATCCCC
***
1216240 GATTGTGGAAAATTG
193 GATTGAAAAAAATTG
* * *
1216255 GTGTTTTAGAAATAAAACCAGGGTTGGAGTATCCCCTTAAAAATAACGGGGTTTGAATATCCCCG
1 GTGTTTTAGAAATAAAACC-GGGTTGGAGTAT-CCCTTAGAAATAACGGGGTTGGAGTATCCCCG
* * * * * *
1216320 ATTATGAAAAATCGATGTTTTGGAAATAAAACCGAGGTTGGAGTATCCTCGATTGCAAAAAATCG
64 ATTATGAAAAATTGGTGTTTTGGAAATAAAATCGGGGTTGGAGTATCCTCGATTACAAAAAATCA
* * *
1216385 ATGTTTTAGAAATAAAATTAGGGTTGGAGTATCCACTTGAAAAAAACAAGATTGGAGTATCCTCG
129 ATGTTTTAGAAATAAAATCAGGGTTGGAGTATCCACTTGAAAAAAACAAGATTAGAGTATCCCCG
1216450 ATTGAAAAAAATTG
194 ATTGAAAAAAATTG
* * * * * *
1216464 GTGTTTTAGAAATAAAACCGGGATTAGTGTATCCCCTCGAAAATAACGAGGTTGGAGTATCCCTG
1 GTGTTTTAGAAATAAAACCGGG-TTGGAGTATCCCTTAG-AAATAACGGGGTTGGAGTATCCCCG
* * *
1216529 ATTGTGAAAAATTGGT-TTTTAGAAATAAAACTC-GGGTTGGCGTATC
64 ATTATGAAAAATTGGTGTTTTGGAAATAAAA-TCGGGGTTGGAGTATC
1216575 TCCTCAGGAA
Statistics
Matches: 270, Mismatches: 44, Indels: 13
0.83 0.13 0.04
Matches are distributed among these distances:
208 31 0.11
209 234 0.87
210 5 0.02
ACGTcount: A:0.34, C:0.12, G:0.24, T:0.30
Consensus pattern (207 bp):
GTGTTTTAGAAATAAAACCGGGTTGGAGTATCCCTTAGAAATAACGGGGTTGGAGTATCCCCGAT
TATGAAAAATTGGTGTTTTGGAAATAAAATCGGGGTTGGAGTATCCTCGATTACAAAAAATCAAT
GTTTTAGAAATAAAATCAGGGTTGGAGTATCCACTTGAAAAAAACAAGATTAGAGTATCCCCGAT
TGAAAAAAATTG
Found at i:1216373 original size:51 final size:51
Alignment explanation
Indices: 1216299--1216418 Score: 136
Period size: 51 Copynumber: 2.4 Consensus size: 51
1216289 CCTTAAAAAT
* * ** *
1216299 AACG-GGGTTTGAATATCCCCGATTATGAAAAATCGATGTTTTGGAAATAA
1 AACGAGGGTTGGAGTATCCCCGATTACAAAAAATCGATGTTTTAGAAATAA
* *
1216349 AACCGA-GGTTGGAGTATCCTCGATTGCAAAAAATCGATGTTTTAGAAATAA
1 AA-CGAGGGTTGGAGTATCCCCGATTACAAAAAATCGATGTTTTAGAAATAA
**
1216400 AATTAGGGTTGGAGTATCC
1 AACGAGGGTTGGAGTATCC
1216419 ACTTGAAAAA
Statistics
Matches: 58, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
50 3 0.05
51 55 0.95
ACGTcount: A:0.35, C:0.12, G:0.23, T:0.29
Consensus pattern (51 bp):
AACGAGGGTTGGAGTATCCCCGATTACAAAAAATCGATGTTTTAGAAATAA
Found at i:1216440 original size:79 final size:78
Alignment explanation
Indices: 1216357--1216574 Score: 251
Period size: 79 Copynumber: 2.8 Consensus size: 78
1216347 AAAACCGAGG
* * * *
1216357 TTGGAGTATCCTCGATTGCAAAAAATCGATGTTTTAGAAATAAAATTAGGGTTGGAGTATCCACT
1 TTGGAGTATCCTCGATTGAAAAAAATTGGTGTTTTAGAAATAAAA-TCGGGTTGGAGTATCCACT
*
1216422 TGAAAAAAACAAGA
65 CGAAAAAAACAAGA
* * * *
1216436 TTGGAGTATCCTCGATTGAAAAAAATTGGTGTTTTAGAAATAAAACCGGGATTAGTGTATCCCCT
1 TTGGAGTATCCTCGATTGAAAAAAATTGGTGTTTTAGAAATAAAATCGGG-TTGGAGTATCCACT
* * *
1216501 CGAAAATAACGAGG
65 CGAAAAAAACAAGA
** *
1216515 TTGGAGTATCC-CTGATTGTGAAAAATTGGT-TTTTAGAAATAAAACTCGGGTTGGCGTATC
1 TTGGAGTATCCTC-GATTGAAAAAAATTGGTGTTTTAGAAATAAAA-TCGGGTTGGAGTATC
1216575 TCCTCAGGAA
Statistics
Matches: 119, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
78 26 0.22
79 93 0.78
ACGTcount: A:0.35, C:0.12, G:0.22, T:0.30
Consensus pattern (78 bp):
TTGGAGTATCCTCGATTGAAAAAAATTGGTGTTTTAGAAATAAAATCGGGTTGGAGTATCCACTC
GAAAAAAACAAGA
Found at i:1216496 original size:130 final size:130
Alignment explanation
Indices: 1216226--1216497 Score: 307
Period size: 130 Copynumber: 2.1 Consensus size: 130
1216216 AAATAACGGA
* *** * * *
1216226 GTTAGAGTATCCCCGATTGTGGAAAATTGGTGTTTTAGAAATAAAACCAGGGTTGGAGTATCCCC
1 GTTAGAGTATCCTCGATTGCAAAAAATCGATGTTTTAGAAATAAAACCAGGGTTGGAGTATCCAC
** * * * *
1216291 TTAAAAATAACGGGGTTTGAATATCCCCGATTATGAAAAATCGATGTTTTGGAAATAAAACCGAG
66 TTAAAAATAACAAGATTGGAATATCCCCGATTATAAAAAATCGATGTTTTAGAAATAAAACCGAG
* **
1216356 GTTGGAGTATCCTCGATTGCAAAAAATCGATGTTTTAGAAATAAAATTAGGGTTGGAGTATCCAC
1 GTTAGAGTATCCTCGATTGCAAAAAATCGATGTTTTAGAAATAAAACCAGGGTTGGAGTATCCAC
* * * *
1216421 TTGAAAAA-AACAAGATTGGAGTATCCTCGATTGA-AAAAAATTGGTGTTTTAGAAATAAAACCG
66 TT-AAAAATAACAAGATTGGAATATCCCCGATT-ATAAAAAATCGATGTTTTAGAAATAAAACCG
1216484 -G
129 AG
*
1216485 GATTAGTGTATCC
1 G-TTAGAGTATCC
1216498 CCTCGAAAAT
Statistics
Matches: 117, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
129 2 0.02
130 109 0.93
131 6 0.05
ACGTcount: A:0.36, C:0.12, G:0.22, T:0.29
Consensus pattern (130 bp):
GTTAGAGTATCCTCGATTGCAAAAAATCGATGTTTTAGAAATAAAACCAGGGTTGGAGTATCCAC
TTAAAAATAACAAGATTGGAATATCCCCGATTATAAAAAATCGATGTTTTAGAAATAAAACCGAG
Found at i:1216618 original size:78 final size:79
Alignment explanation
Indices: 1216353--1216667 Score: 239
Period size: 79 Copynumber: 4.0 Consensus size: 79
1216343 AAATAAAACC
* *** * * * * *
1216353 GAGGTTGGAGTATCCTCGATTGCAAAAAATCGATGTTTTAGAAATAAAATTAGGGTTGGAGTATC
1 GAGGTTAGAGTATCCTCGATTATGAAAAATTGGTATTTTAGAAATAAAACTCGGGTTGGAGTATC
* *
1216418 CACTTGAAAA-AAA
66 CCCTCGAAAATAAA
* * * * * * *
1216431 CAAGATTGGAGTATCCTCGATTGA-AAAAAATTGGTGTTTTAGAAATAAAAC-CGGGATTAGTGT
1 -GAGGTTAGAGTATCCTCGATT-ATGAAAAATTGGTATTTTAGAAATAAAACTCGGG-TTGGAGT
*
1216494 ATCCCCTCGAAAATAAC
63 ATCCCCTCGAAAATAAA
* * *
1216511 GAGGTTGGAGTATCC-CTGATTGTGAAAAATTGGT-TTTTAGAAATAAAACTCGGGTTGGCGTAT
1 GAGGTTAGAGTATCCTC-GATTATGAAAAATTGGTATTTTAGAAATAAAACTCGGGTTGGAGTAT
* *
1216574 CTCCTC-AGGAATAAA
65 CCCCTCGA-AAATAAA
* * * * * *
1216589 GGGGTTAGAGTATCCTCGATTATGGAAAATCGATATTTCAAAAATAAAACT-GGAGTTGGAGTAT
1 GAGGTTAGAGTATCCTCGATTATGAAAAATTGGTATTTTAGAAATAAAACTCGG-GTTGGAGTAT
* *
1216653 CCCTTCGGAAATAAA
65 CCCCTCGAAAATAAA
1216668 AACATAAATG
Statistics
Matches: 191, Mismatches: 34, Indels: 22
0.77 0.14 0.09
Matches are distributed among these distances:
77 1 0.01
78 64 0.34
79 124 0.65
80 2 0.01
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.29
Consensus pattern (79 bp):
GAGGTTAGAGTATCCTCGATTATGAAAAATTGGTATTTTAGAAATAAAACTCGGGTTGGAGTATC
CCCTCGAAAATAAA
Found at i:1219096 original size:50 final size:50
Alignment explanation
Indices: 1219005--1219137 Score: 155
Period size: 50 Copynumber: 2.7 Consensus size: 50
1218995 AAAAGGCCTG
* ** * * *
1219005 AATGTATCGATA-ATTG-AGAAATGTATTTATACATTTGGGTAAAACCCAG
1 AATGTATCGATATAATGAAG-AATGTATCGATACATCTAGGTAAAACCCAA
*
1219054 AATGTATCGATATAATGAATG-ATGTATCGATACATCTAGGTAAACCCCAA
1 AATGTATCGATATAATGAA-GAATGTATCGATACATCTAGGTAAAACCCAA
*
1219104 AATGTATTGATATAATGAAGAATGTATCGATACA
1 AATGTATCGATATAATGAAGAATGTATCGATACA
1219138 AATTATGAAA
Statistics
Matches: 72, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
49 13 0.18
50 57 0.79
51 1 0.01
52 1 0.01
ACGTcount: A:0.41, C:0.11, G:0.17, T:0.31
Consensus pattern (50 bp):
AATGTATCGATATAATGAAGAATGTATCGATACATCTAGGTAAAACCCAA
Found at i:1219797 original size:61 final size:61
Alignment explanation
Indices: 1219663--1220238 Score: 730
Period size: 61 Copynumber: 9.5 Consensus size: 61
1219653 AAAGGAGAGG
* * *
1219663 GGCGTCCTGCACTTTGAGGATTAAAAGGTGCCACCAAC-T-TGTGGGCTTTGAAAA-GAAAA
1 GGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAA
* * * * *
1219722 AGCATCCTGCTCTTTGAAGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAA
1 GGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAA
* * * * * *
1219783 GGCGTACTGCTCTTTAAGGACTGAAAGGTGCCCCCAACTCGTGTCGGCTTTAAAAGAAAAA
1 GGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAA
* ** *
1219844 GGCGTCCTGCTTTTTGAGGACTGAAAGGTGCCACCAACTCATGTGGGATTTAAAA-GAAGAA
1 GGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAA-AA
* * *
1219905 GGCGTCCTGCTCTTTGAAGACTGAAAGGTGCCACCAACTTGCGTGTGCTTTAAAAGGAAAA
1 GGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAA
* * * * *
1219966 GGTGTCCTGCTTTTTGAGGACTGAAAGGTGCCACCAAATTGTGTGAGCTTTAAAAAGAAAA
1 GGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAA
* *
1220027 GACATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAATAA-GAAAA
1 GGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAA-AAGGAAAA
* * *
1220088 GGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAGAAGGAAGA
1 GGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAA
* * * *
1220149 GGCATCCTGCTCTTTGAGAACTGAAAGGTGCCACCAACTTGTATGGGCTTTAGAAGGAAAA
1 GGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAA
** * * *
1220210 GATGTCCTACTCCTTGAGGACTAAAAGGT
1 GGCGTCCTGCTCTTTGAGGACTGAAAGGT
1220239 TAAAAGGTTT
Statistics
Matches: 450, Mismatches: 60, Indels: 12
0.86 0.11 0.02
Matches are distributed among these distances:
59 31 0.07
60 9 0.02
61 405 0.90
62 5 0.01
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.25
Consensus pattern (61 bp):
GGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAA
Found at i:1221241 original size:18 final size:17
Alignment explanation
Indices: 1221214--1221249 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
1221204 GGTTTTTTTC
*
1221214 TTTTCTCTTTTTTCTTT
1 TTTTCTCTTTTTTATTT
1221231 TTTTCCTCTTTTTTATTT
1 TTTT-CTCTTTTTTATTT
1221249 T
1 T
1221250 GTTTTTGTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.81
Consensus pattern (17 bp):
TTTTCTCTTTTTTATTT
Found at i:1221267 original size:13 final size:12
Alignment explanation
Indices: 1221246--1221280 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
1221236 CTCTTTTTTA
1221246 TTTTGTTTTTGTG
1 TTTT-TTTTTGTG
1221259 TTATTTTTTTGTG
1 TT-TTTTTTTGTG
1221272 TTTTTTTTT
1 TTTTTTTTT
1221281 AAAAAGGAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 7 0.33
13 12 0.57
14 2 0.10
ACGTcount: A:0.03, C:0.00, G:0.14, T:0.83
Consensus pattern (12 bp):
TTTTTTTTTGTG
Found at i:1221276 original size:11 final size:13
Alignment explanation
Indices: 1221251--1221280 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
1221241 TTTTATTTTG
1221251 TTTTTGTGTTATT
1 TTTTTGTGTTATT
1221264 TTTTTGTGTT-TT
1 TTTTTGTGTTATT
1221276 TTTTT
1 TTTTT
1221281 AAAAAGGAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.41
13 10 0.59
ACGTcount: A:0.03, C:0.00, G:0.13, T:0.83
Consensus pattern (13 bp):
TTTTTGTGTTATT
Found at i:1233718 original size:28 final size:29
Alignment explanation
Indices: 1233686--1233755 Score: 90
Period size: 28 Copynumber: 2.5 Consensus size: 29
1233676 GATAAAATCA
*** *
1233686 GGGTTGGAGTATCCT-CTTGGAAATAATG
1 GGGTTGGAGTATCCTCCTAAAAAATAACG
1233714 GGGTTGGAGTAT-CTCCTAAAAAATAACG
1 GGGTTGGAGTATCCTCCTAAAAAATAACG
1233742 GGGTTGGAGTATCC
1 GGGTTGGAGTATCC
1233756 CCGATTATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
27 2 0.06
28 33 0.92
29 1 0.03
ACGTcount: A:0.27, C:0.13, G:0.31, T:0.29
Consensus pattern (29 bp):
GGGTTGGAGTATCCTCCTAAAAAATAACG
Found at i:1233858 original size:130 final size:129
Alignment explanation
Indices: 1233717--1234196 Score: 507
Period size: 130 Copynumber: 3.7 Consensus size: 129
1233707 AATAATGGGG
* **
1233717 TTGGAGTATCTCCTAAAAAATAACGGGGTTGGAGTATCCCCGATTATATAAAATCAATGTTTTGG
1 TTGGAGTATCTCCTAAAAAATAACGAGGTTGGAGTATCCCCGATTATGGAAAATCAATGTTTTGG
* *
1233782 AAATAAAACCGAGGTTGGAGTATCTCAAATTGTGAAAAATT-AGTGTTTTGAAAATAAAATCAGG
66 AAATAAAACCGAGGTTGGAGTATCTC-GATTGTGAAAAATTGA-TGTTTTGAAAATAAAACCAGG
1233846 A
129 A
* * * * * *
1233847 TTGGAGTATCTCTTTAGAAATAATGGGGTTGGAGTATCCCTGATTATGGAAAATCAATGTTTTGG
1 TTGGAGTATCTCCTAAAAAATAACGAGGTTGGAGTATCCCCGATTATGGAAAATCAATGTTTTGG
** * * * *
1233912 AAATAAAATTGAGGTTGAAGTATCCTCGATTGTGAAAAATCGATGTTTTGGAAATAAAACCAGGG
66 AAATAAAACCGAGGTTGGAGTAT-CTCGATTGTGAAAAATTGATGTTTTGAAAATAAAACCAGGA
** * **
1233977 TTGGAGTATCTCCTTGGAAAATAACGAGGTTGGAGTATCCCCAATTATGGAAAATTGATGTTTTG
1 TTGGAGTATCTCC-TAAAAAATAACGAGGTTGGAGTATCCCCGATTATGGAAAATCAATGTTTTG
* * * * * *
1234042 GAAATAAAACTGGGGTTGGAGTATCGCCGATTATGAAAAATTGCTATTTT-AGAAATAAAACCA-
65 GAAATAAAACCGAGGTTGGAGTATC-TCGATTGTGAAAAATTGATGTTTTGA-AAATAAAACCAG
1234105 GA
128 GA
** * * * * * * * * *
1234107 GTTGGACAATCCCCTCAGAAATAACAAGGTTGGAGTATCCTCGATTGTGGAAAATTAGTGTTTTA
1 -TTGGAGTATCTCCTAAAAAATAACGAGGTTGGAGTATCCCCGATTATGGAAAATCAATGTTTTG
* *
1234172 GAAATAAAATCGAGATTGGAGTATC
65 GAAATAAAACCGAGGTTGGAGTATC
1234197 CCCTTGAAAA
Statistics
Matches: 292, Mismatches: 52, Indels: 12
0.82 0.15 0.03
Matches are distributed among these distances:
130 185 0.63
131 107 0.37
ACGTcount: A:0.36, C:0.11, G:0.23, T:0.30
Consensus pattern (129 bp):
TTGGAGTATCTCCTAAAAAATAACGAGGTTGGAGTATCCCCGATTATGGAAAATCAATGTTTTGG
AAATAAAACCGAGGTTGGAGTATCTCGATTGTGAAAAATTGATGTTTTGAAAATAAAACCAGGA
Found at i:1233936 original size:51 final size:51
Alignment explanation
Indices: 1233873--1233970 Score: 144
Period size: 51 Copynumber: 1.9 Consensus size: 51
1233863 GAAATAATGG
* *
1233873 GGTTGGAGTATCC-CTGATTATGGAAAATCAATGTTTTGGAAATAAAATTGA
1 GGTTGAAGTATCCTC-GATTATGAAAAATCAATGTTTTGGAAATAAAATTGA
* *
1233924 GGTTGAAGTATCCTCGATTGTGAAAAATCGATGTTTTGGAAATAAAA
1 GGTTGAAGTATCCTCGATTATGAAAAATCAATGTTTTGGAAATAAAA
1233971 CCAGGGTTGG
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
51 41 0.98
52 1 0.02
ACGTcount: A:0.36, C:0.08, G:0.23, T:0.33
Consensus pattern (51 bp):
GGTTGAAGTATCCTCGATTATGAAAAATCAATGTTTTGGAAATAAAATTGA
Found at i:1233979 original size:51 final size:50
Alignment explanation
Indices: 1233872--1233986 Score: 142
Period size: 51 Copynumber: 2.3 Consensus size: 50
1233862 AGAAATAATG
* **
1233872 GGGTTGGAGTATCCCTGATTATGGAAAATCAATGTTTTGGAAATAAAATT
1 GGGTTGGAGTATCCCTGATTATGAAAAATCAATGTTTTGGAAATAAAACA
* * *
1233922 GAGGTTGAAGTAT-CCTCGATTGTGAAAAATCGATGTTTTGGAAATAAAACCA
1 G-GGTTGGAGTATCCCT-GATTATGAAAAATCAATGTTTTGGAAATAAAA-CA
1233974 GGGTTGGAGTATC
1 GGGTTGGAGTATC
1233987 TCCTTGGAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
50 4 0.07
51 49 0.91
52 1 0.02
ACGTcount: A:0.33, C:0.10, G:0.26, T:0.31
Consensus pattern (50 bp):
GGGTTGGAGTATCCCTGATTATGAAAAATCAATGTTTTGGAAATAAAACA
Found at i:1234064 original size:51 final size:51
Alignment explanation
Indices: 1234004--1234102 Score: 144
Period size: 51 Copynumber: 1.9 Consensus size: 51
1233994 AAAATAACGA
* * *
1234004 GGTTGGAGTATCCCCAATTATGGAAAATTGATGTTTTGGAAATAAAACTGG
1 GGTTGGAGTATCCCCAATTATGAAAAATTGATATTTTAGAAATAAAACTGG
* * *
1234055 GGTTGGAGTATCGCCGATTATGAAAAATTGCTATTTTAGAAATAAAAC
1 GGTTGGAGTATCCCCAATTATGAAAAATTGATATTTTAGAAATAAAAC
1234103 CAGAGTTGGA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 42 1.00
ACGTcount: A:0.35, C:0.10, G:0.23, T:0.31
Consensus pattern (51 bp):
GGTTGGAGTATCCCCAATTATGAAAAATTGATATTTTAGAAATAAAACTGG
Found at i:1234152 original size:79 final size:78
Alignment explanation
Indices: 1234055--1234260 Score: 213
Period size: 79 Copynumber: 2.6 Consensus size: 78
1234045 ATAAAACTGG
*
1234055 GGTTGGAGTATCGC-CGATTATGAAAAATTGCTATTTTAGAAATAAAACC-AGAGTTGGACAATC
1 GGTTGGAGTATC-CTCGATTATGAAAAATTG-TGTTTTAGAAATAAAACCGAGA-TTGGACAATC
1234118 CCCTCAG-AAATAACAA
63 CCCT-AGAAAATAACAA
* * * **
1234134 GGTTGGAGTATCCTCGATTGTGGAAAATTAGTGTTTTAGAAATAAAATCGAGATTGGAGTATCCC
1 GGTTGGAGTATCCTCGATTATGAAAAATT-GTGTTTTAGAAATAAAACCGAGATTGGACAATCCC
* ***
1234199 CTTGAAAATAATGG
65 CTAGAAAATAACAA
* *
1234213 GGTTAGAGTATCCTCGATTATAAAAAATTGATGTTTT-GAAAATAAAAC
1 GGTTGGAGTATCCTCGATTATGAAAAATTG-TGTTTTAG-AAATAAAAC
1234261 TAGGGTTAGA
Statistics
Matches: 106, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
78 4 0.04
79 98 0.92
80 4 0.04
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.30
Consensus pattern (78 bp):
GGTTGGAGTATCCTCGATTATGAAAAATTGTGTTTTAGAAATAAAACCGAGATTGGACAATCCCC
TAGAAAATAACAA
Found at i:1234197 original size:261 final size:260
Alignment explanation
Indices: 1233714--1234197 Score: 616
Period size: 261 Copynumber: 1.9 Consensus size: 260
1233704 GGAAATAATG
* * *
1233714 GGGTTGGAGTATCTCCTAAAAAATAACGGGGTTGGAGTATCCCCGATTATATAAAATCAATGTTT
1 GGGTTGGAGTATCTCCTAAAAAATAACGAGGTTGGAGTATCCCCAATTATAGAAAATCAATGTTT
* * * *
1233779 TGGAAATAAAACCGAGGTTGGAGTATCTCAAATTGTGAAAAATTAGTGTTTTGAAAATAAAATCA
66 TGGAAATAAAACCGAGGTTGGAGTATCGCAAATTATGAAAAATTAGTATTTTGAAAATAAAACCA
** * * * ***
1233844 GGATTGGAGTATCTCTTTAGAAATAATGGGGTTGGAGTATCCCTGATTATGGAAAATCAATGTTT
131 GGATTGGACAATCCCCTCAGAAATAACAAGGTTGGAGTATCCCTGATTATGGAAAATCAATGTTT
* * *
1233909 TGGAAATAAAATTGAGGTTGAAGTATCCTCGATTGTGAAAAATCGATGTTTTGGAAATAAAACCA
196 TAGAAATAAAATCGAGATTGAAGTATCCTCGATTGTGAAAAATCGATGTTTTGGAAATAAAACCA
** * **
1233974 GGGTTGGAGTATCTCCTTGGAAAATAACGAGGTTGGAGTATCCCCAATTATGGAAAATTGATGTT
1 GGGTTGGAGTATCTCC-TAAAAAATAACGAGGTTGGAGTATCCCCAATTATAGAAAATCAATGTT
* * **
1234039 TTGGAAATAAAACTGGGGTTGGAGTATCGCCGATTATGAAAAATT-GCTATTTT-AGAAATAAAA
65 TTGGAAATAAAACCGAGGTTGGAGTATCGCAAATTATGAAAAATTAG-TATTTTGA-AAATAAAA
* * *
1234102 CCA-GAGTTGGACAATCCCCTCAGAAATAACAAGGTTGGAGTAT-CCTCGATTGTGGAAAATTAG
128 CCAGGA-TTGGACAATCCCCTCAGAAATAACAAGGTTGGAGTATCCCT-GATTATGGAAAATCAA
*
1234165 TGTTTTAGAAATAAAATCGAGATTGGAGTATCC
191 TGTTTTAGAAATAAAATCGAGATTGAAGTATCC
1234198 CCTTGAAAAT
Statistics
Matches: 188, Mismatches: 31, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
260 23 0.12
261 165 0.88
ACGTcount: A:0.35, C:0.11, G:0.23, T:0.30
Consensus pattern (260 bp):
GGGTTGGAGTATCTCCTAAAAAATAACGAGGTTGGAGTATCCCCAATTATAGAAAATCAATGTTT
TGGAAATAAAACCGAGGTTGGAGTATCGCAAATTATGAAAAATTAGTATTTTGAAAATAAAACCA
GGATTGGACAATCCCCTCAGAAATAACAAGGTTGGAGTATCCCTGATTATGGAAAATCAATGTTT
TAGAAATAAAATCGAGATTGAAGTATCCTCGATTGTGAAAAATCGATGTTTTGGAAATAAAACCA
Found at i:1234256 original size:48 final size:49
Alignment explanation
Indices: 1234200--1234308 Score: 148
Period size: 51 Copynumber: 2.2 Consensus size: 49
1234190 GAGTATCCCC
*
1234200 TTGAAAATAA-TGGGGTTAGAGTATCCTCGATTATAAAAAATTGATGTT
1 TTGAAAATAACTAGGGTTAGAGTATCCTCGATTATAAAAAATTGATGTT
* * *
1234248 TTGAAAATAAAACTAGGGTTAGAGTATCCTCGATTGTGAAAAATTGGTGTT
1 TTGAAAAT--AACTAGGGTTAGAGTATCCTCGATTATAAAAAATTGATGTT
*
1234299 TTAAAAATAA
1 TTGAAAATAA
1234309 AATCGGGGTC
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
48 8 0.15
49 2 0.04
50 2 0.04
51 41 0.77
ACGTcount: A:0.39, C:0.06, G:0.20, T:0.34
Consensus pattern (49 bp):
TTGAAAATAACTAGGGTTAGAGTATCCTCGATTATAAAAAATTGATGTT
Found at i:1234258 original size:340 final size:337
Alignment explanation
Indices: 1233793--1234747 Score: 1137
Period size: 340 Copynumber: 2.8 Consensus size: 337
1233783 AATAAAACCG
* *
1233793 AGGTTGGAGTAT-CTCAAATTGTGAAAAATTAGTGTTTT-GAAAATAAAATCAGGATTGGAGTAT
1 AGGTTGGAGTATCCTCAGATTGTGGAAAATTAGTGTTTTAG-AAATAAAATCAGGATTGGAGTAT
* * * *
1233856 -CTCTTTAGAAATAATGGGGTTGGAGTATCC-CTGATTATGGAAAATCAATGTTTTGGAAATAAA
65 CCCCTTGA-AAATAATGGGGTTGGAGTATCCTC-GATTATGAAAAAT-TATGTTTTGGAAATAAA
* * *
1233919 ATTGAGGTTGAAGTATCCTCGATTGTGAAAAATCGATGTTTTGGAAATAAAACCAGGGTTGGAGT
127 ACTGAGGTT-AAGTATCCTCGATTGTGAAAAATCGATGTTTTGAAAATAAAATC-GGGTTGGAGT
*
1233984 ATCTCCTTGGAAAATAACGAGGTTGGAGTATCCCCAATTATGGAAAATTGATGTTTTGGAAATAA
190 ATC-CCTTGGAAAATAACGAGGTTGGAGTATCCCCGATTATGGAAAATTGATGTTTTGGAAATAA
* *
1234049 AACTGGGGTTGGAGTATCGC-CGATTATGAAAAATTGCTATTTTAGAAATAAAACCAGAGTTGGA
254 AACTGGGGTTGGAGTATC-CTCGATTATGAAAAATCGATATTTTAGAAATAAAACCAGAGTTGGA
1234113 CAATCCCCTCAGAAATAACA
318 CAATCCCCTCAGAAATAACA
1234133 AGGTTGGAGTATCCTC-GATTGTGGAAAATTAGTGTTTTAGAAATAAAATC-GAGATTGGAGTAT
1 AGGTTGGAGTATCCTCAGATTGTGGAAAATTAGTGTTTTAGAAATAAAATCAG-GATTGGAGTAT
* * *
1234196 CCCCTTGAAAATAATGGGGTTAGAGTATCCTCGATTATAAAAAATTGATGTTTTGAAAATAAAAC
65 CCCCTTGAAAATAATGGGGTTGGAGTATCCTCGATTATGAAAAATT-ATGTTTTGGAAATAAAAC
* * * *
1234261 T-AGGGTTAGAGTATCCTCGATTGTGAAAAATTGGTGTTTTAAAAATAAAATCGGGGTCGGAGTA
129 TGA-GGTTA-AGTATCCTCGATTGTGAAAAATCGATGTTTTGAAAATAAAATC-GGGTTGGAGTA
* * * * *
1234325 TCCCTT-TACAACTAAC-AGGGTTGGAGTATCCCCGATTATGGAAAATCGATGTTTTGAAAAAAA
191 TCCCTTGGA-AAATAACGA-GGTTGGAGTATCCCCGATTATGGAAAATTGATGTTTTGGAAATAA
* * * *
1234388 AACTGGGGGTTGGAGTATCCTCGATTATGAAAAATCGATGTTTTGGAAATAAAACCGGGGTTGGA
254 AACT-GGGGTTGGAGTATCCTCGATTATGAAAAATCGATATTTTAGAAATAAAACCAGAGTTGGA
** *
1234453 GTATCCCCTTAGAAATAACA
318 CAATCCCCTCAGAAATAACA
* * * * * *
1234473 AGGTTGGAGTATCC-CTGATTATGGAAAATTGGTGTTTTAGAAATAAAACCAGGGTTAGAGTATC
1 AGGTTGGAGTATCCTCAGATTGTGGAAAATTAGTGTTTTAGAAATAAAATCAGGATTGGAGTATC
* * * * *
1234537 CCCTCGGAAATAACGGGATTGGAGTGTCCTCGATTATGAAAAATTAGTGTTTTGGAAATAAAACC
66 CCCTTGAAAATAATGGGGTTGGAGTATCCTCGATTATGAAAAATTA-TGTTTTGGAAATAAAA-C
* * * * *
1234602 GGGGGTTAAAGTATCGTCGATTATGAAAAATC-AGTGTTTTGAAAATTAAATCGGGATTGGAGTA
129 TGAGGTT-AAGTATCCTCGATTGTGAAAAATCGA-TGTTTTGAAAATAAAATCGGG-TTGGAGTA
* * *
1234666 TCCCCTTGG-AAATAACGAGGTTGGAGTATCCCTGATTGTGGAAAATT-AGTGTTTTAGAAATAA
191 T-CCCTTGGAAAATAACGAGGTTGGAGTATCCCCGATTATGGAAAATTGA-TGTTTTGGAAATAA
* *
1234729 AACCGAGGTTGGAGTATCC
254 AACTGGGGTTGGAGTATCC
1234748 CTTCAAAAAT
Statistics
Matches: 527, Mismatches: 64, Indels: 48
0.82 0.10 0.08
Matches are distributed among these distances:
338 2 0.00
339 61 0.12
340 351 0.67
341 106 0.20
342 7 0.01
ACGTcount: A:0.35, C:0.11, G:0.24, T:0.30
Consensus pattern (337 bp):
AGGTTGGAGTATCCTCAGATTGTGGAAAATTAGTGTTTTAGAAATAAAATCAGGATTGGAGTATC
CCCTTGAAAATAATGGGGTTGGAGTATCCTCGATTATGAAAAATTATGTTTTGGAAATAAAACTG
AGGTTAAGTATCCTCGATTGTGAAAAATCGATGTTTTGAAAATAAAATCGGGTTGGAGTATCCCT
TGGAAAATAACGAGGTTGGAGTATCCCCGATTATGGAAAATTGATGTTTTGGAAATAAAACTGGG
GTTGGAGTATCCTCGATTATGAAAAATCGATATTTTAGAAATAAAACCAGAGTTGGACAATCCCC
TCAGAAATAACA
Found at i:1234273 original size:51 final size:51
Alignment explanation
Indices: 1234212--1234310 Score: 162
Period size: 51 Copynumber: 1.9 Consensus size: 51
1234202 GAAAATAATG
*
1234212 GGGTTAGAGTATCCTCGATTATAAAAAATTGATGTTTTGAAAATAAAACTA
1 GGGTTAGAGTATCCTCGATTATAAAAAATTGATGTTTTAAAAATAAAACTA
* * *
1234263 GGGTTAGAGTATCCTCGATTGTGAAAAATTGGTGTTTTAAAAATAAAA
1 GGGTTAGAGTATCCTCGATTATAAAAAATTGATGTTTTAAAAATAAAA
1234311 TCGGGGTCGG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 44 1.00
ACGTcount: A:0.39, C:0.07, G:0.20, T:0.33
Consensus pattern (51 bp):
GGGTTAGAGTATCCTCGATTATAAAAAATTGATGTTTTAAAAATAAAACTA
Done.