Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold280
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 318473
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.33
File 1 of 2
Found at i:973 original size:13 final size:13
Alignment explanation
Indices: 955--980 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
945 ATAATCACCC
955 TGTATCGATACAA
1 TGTATCGATACAA
968 TGTATCGATACAA
1 TGTATCGATACAA
981 AGAAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1037 original size:20 final size:20
Alignment explanation
Indices: 966--1045 Score: 79
Period size: 20 Copynumber: 3.8 Consensus size: 20
956 GTATCGATAC
*
966 AATGTATCGATACAAAGAAA
1 AATGTATCGATACATAGAAA
*
986 AATGTATCGATACATTGAATTTCCA
1 AATGTATCGATACATAGAA-----A
*
1011 GATGTATCGATACATAGAAA
1 AATGTATCGATACATAGAAA
*
1031 CATGTATCGATACAT
1 AATGTATCGATACAT
1046 TTTGGACATT
Statistics
Matches: 50, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
20 32 0.64
25 18 0.36
ACGTcount: A:0.42, C:0.14, G:0.15, T:0.29
Consensus pattern (20 bp):
AATGTATCGATACATAGAAA
Found at i:4916 original size:21 final size:21
Alignment explanation
Indices: 4887--4931 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
4877 AAGTTTTTAT
*
4887 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
4907 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
4929 TTT
1 TTT
4932 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:7167 original size:13 final size:13
Alignment explanation
Indices: 7149--7174 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7139 CAATTTTTTG
7149 TGTATCGATACAT
1 TGTATCGATACAT
7162 TGTATCGATACAT
1 TGTATCGATACAT
7175 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:7189 original size:32 final size:33
Alignment explanation
Indices: 7129--7192 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
7119 TACAAGCCAA
** *
7129 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
7162 TGTATCGATAC-ATACTTGGTGTATCGATACA
1 TGTATCGATACAATACTTGGTGTATCGATACA
7193 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATACAT
Found at i:14894 original size:20 final size:22
Alignment explanation
Indices: 14854--14901 Score: 73
Period size: 20 Copynumber: 2.3 Consensus size: 22
14844 TGAAAATAAA
*
14854 TTTTTATCAAGGGGGAGAAATT
1 TTTTTATCAAGAGGGAGAAATT
14876 TTTTTATCAA-AGGGA-AAATT
1 TTTTTATCAAGAGGGAGAAATT
14896 TTTTTA
1 TTTTTA
14902 ACGAAACTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 11 0.44
21 4 0.16
22 10 0.40
ACGTcount: A:0.33, C:0.04, G:0.19, T:0.44
Consensus pattern (22 bp):
TTTTTATCAAGAGGGAGAAATT
Found at i:21715 original size:79 final size:78
Alignment explanation
Indices: 21477--21699 Score: 277
Period size: 79 Copynumber: 2.8 Consensus size: 78
21467 TTGAGAAGTT
* * * * *
21477 TAAAAGCGAGGTTAGAGTATACCCTCAAAAATAATGGGGTTGGAGTATCCTTGGGATGAAAATTT
1 TAAAAACGAGGTTAGAGTAT-CCCTCGAAAATAATGGGGTTGGAGTATCCTCGAGATGAAAAATT
21542 TAATATTTTGAAAA
65 TAATATTTTGAAAA
* * *
21556 TAAAAACGAGATTAGAGTATCCCCTCGGAAATAATGGGGTTGGAGTAT-CTCCACGATGAAAAAT
1 TAAAAACGAGGTTAGAGTAT-CCCTCGAAAATAATGGGGTTGGAGTATCCTCGA-GATGAAAAAT
21620 TTAATATTTTGAAAA
64 TTAATATTTTGAAAA
* * * * * *
21635 TACAAATGGGGTTAGAGTATCCCTTCGAAAAGAATGAGGTTAGAGTATCCTCGAGATGAAAAATT
1 TAAAAACGAGGTTAGAGTATCCC-TCGAAAATAATGGGGTTGGAGTATCCTCGAGATGAAAAATT
21700 CGATATTATA
Statistics
Matches: 123, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
78 5 0.04
79 114 0.93
80 4 0.03
ACGTcount: A:0.38, C:0.11, G:0.22, T:0.28
Consensus pattern (78 bp):
TAAAAACGAGGTTAGAGTATCCCTCGAAAATAATGGGGTTGGAGTATCCTCGAGATGAAAAATTT
AATATTTTGAAAA
Found at i:24983 original size:30 final size:30
Alignment explanation
Indices: 24947--25252 Score: 236
Period size: 30 Copynumber: 10.4 Consensus size: 30
24937 AATTGGTGTA
*
24947 GGCTTTGAAAA-AGAGTGCCACTAACTTATG
1 GGCTTTGAAAAGAGA-TGCCACTAACTTGTG
* * *
24977 GGCTTTGAAAGGAGATGCCATTGACTTGTG
1 GGCTTTGAAAAGAGATGCCACTAACTTGTG
* * * *
25007 GGCTTTGAAAGGATATGCCATTGACTTGTG
1 GGCTTTGAAAAGAGATGCCACTAACTTGTG
* * *
25037 GGCTTTG-AAAG-GGTGGCACTGACTTGTG
1 GGCTTTGAAAAGAGATGCCACTAACTTGTG
* * * *
25065 GGCTTTGAAAGGAGATGCCACTGACTTATA
1 GGCTTTGAAAAGAGATGCCACTAACTTGTG
* * * *
25095 GGCTTTG-ATAG-GGTGGCACTGACTTGTG
1 GGCTTTGAAAAGAGATGCCACTAACTTGTG
* *
25123 GGCTTTGAAAGGGGATGCCAC-AGACTTGTG
1 GGCTTTGAAAAGAGATGCCACTA-ACTTGTG
* * * *
25153 GGCTTTGAAAGGCGATGGCAC-AGACTTATG
1 GGCTTTGAAAAGAGATGCCACTA-ACTTGTG
* *
25183 GGCTTT-AATAAGAGATGCCACCAACTTATG
1 GGCTTTGAA-AAGAGATGCCACTAACTTGTG
* *
25213 GGCTTT-AAGAG-GGTGCCACTAACTTGTG
1 GGCTTTGAAAAGAGATGCCACTAACTTGTG
*
25241 GGCTTTCAAAAG
1 GGCTTTGAAAAG
25253 GGATTTGGAA
Statistics
Matches: 230, Mismatches: 37, Indels: 19
0.80 0.13 0.07
Matches are distributed among these distances:
28 60 0.26
29 18 0.08
30 148 0.64
31 4 0.02
ACGTcount: A:0.25, C:0.16, G:0.31, T:0.28
Consensus pattern (30 bp):
GGCTTTGAAAAGAGATGCCACTAACTTGTG
Found at i:25076 original size:58 final size:58
Alignment explanation
Indices: 24947--25246 Score: 345
Period size: 58 Copynumber: 5.1 Consensus size: 58
24937 AATTGGTGTA
* * * *
24947 GGCTTTGAAA-AAGAGTGCCACTAACTTATGGGCTTTGAAAGGAGATGCCATTGACTTGTG
1 GGCTTTGAAAGGAGA-TGCCACTGACTTATGGGCTTTGAAAGG-G-TGGCACTGACTTGTG
* * *
25007 GGCTTTGAAAGGATATGCCATTGACTTGTGGGCTTTGAAAGGGTGGCACTGACTTGTG
1 GGCTTTGAAAGGAGATGCCACTGACTTATGGGCTTTGAAAGGGTGGCACTGACTTGTG
* *
25065 GGCTTTGAAAGGAGATGCCACTGACTTATAGGCTTTGATAGGGTGGCACTGACTTGTG
1 GGCTTTGAAAGGAGATGCCACTGACTTATGGGCTTTGAAAGGGTGGCACTGACTTGTG
* * * * *
25123 GGCTTTGAAAGGGGATGCCACAGACTTGTGGGCTTTGAAAGGCGATGGCACAGACTTATG
1 GGCTTTGAAAGGAGATGCCACTGACTTATGGGCTTTGAAAGG-G-TGGCACTGACTTGTG
* ** * *
25183 GGCTTT-AATAAGAGATGCCACCAACTTATGGGCTTT-AAGAGGGTGCCACTAACTTGTG
1 GGCTTTGAA-AGGAGATGCCACTGACTTATGGGCTTTGAA-AGGGTGGCACTGACTTGTG
25241 GGCTTT
1 GGCTTT
25247 CAAAAGGGAT
Statistics
Matches: 207, Mismatches: 28, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
58 120 0.58
59 7 0.03
60 78 0.38
61 2 0.01
ACGTcount: A:0.24, C:0.16, G:0.31, T:0.28
Consensus pattern (58 bp):
GGCTTTGAAAGGAGATGCCACTGACTTATGGGCTTTGAAAGGGTGGCACTGACTTGTG
Found at i:25149 original size:88 final size:87
Alignment explanation
Indices: 24947--25246 Score: 313
Period size: 88 Copynumber: 3.4 Consensus size: 87
24937 AATTGGTGTA
* * * *
24947 GGCTTTGAAAAAGAGTGCCACTA-ACTTATGGGCTTTGAAAGGAGATGCCATTGACTTGTGGGCT
1 GGCTTTG--AAAGGGTGCCAC-AGACTTGTGGGCTTTGAAAGGAGATGCCACTGACTTATGGGCT
*
25011 TTGAAAGGATATGCCATTGACTTGTG
63 TTGAAAGGA-ATGCCACTGACTTGTG
* * *
25037 GGCTTTGAAAGGGTGGCACTGACTTGTGGGCTTTGAAAGGAGATGCCACTGACTTATAGGCTTTG
1 GGCTTTGAAAGGGTGCCACAGACTTGTGGGCTTTGAAAGGAGATGCCACTGACTTATGGGCTTTG
* * *
25102 ATAGG-GTGGCACTGACTTGTG
66 AAAGGAATGCCACTGACTTGTG
* * *
25123 GGCTTTGAAAGGGGATGCCACAGACTTGTGGGCTTTGAAAGGCGATGGCACAGACTTATGGGCTT
1 GGCTTTGAAA-GGG-TGCCACAGACTTGTGGGCTTTGAAAGGAGATGCCACTGACTTATGGGCTT
* ** *
25188 T-AATAAGAGATGCCACCAACTTATG
64 TGAA-AGGA-ATGCCACTGACTTGTG
25213 GGCTTT-AAGAGGGTGCCACTA-ACTTGTGGGCTTT
1 GGCTTTGAA-AGGGTGCCAC-AGACTTGTGGGCTTT
25247 CAAAAGGGAT
Statistics
Matches: 178, Mismatches: 24, Indels: 18
0.81 0.11 0.08
Matches are distributed among these distances:
86 23 0.13
87 4 0.02
88 120 0.67
89 6 0.03
90 25 0.14
ACGTcount: A:0.24, C:0.16, G:0.31, T:0.28
Consensus pattern (87 bp):
GGCTTTGAAAGGGTGCCACAGACTTGTGGGCTTTGAAAGGAGATGCCACTGACTTATGGGCTTTG
AAAGGAATGCCACTGACTTGTG
Found at i:28120 original size:20 final size:20
Alignment explanation
Indices: 28073--28124 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
28063 GTTGGGCACA
* *
28073 GTGTATCGATACTATTTACC
1 GTGTATCGATACAATGTACC
* * *
28093 ATGCATCGATACAATGTCCC
1 GTGTATCGATACAATGTACC
28113 GTGTATCGATAC
1 GTGTATCGATAC
28125 TTTTCACTTA
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (20 bp):
GTGTATCGATACAATGTACC
Found at i:28180 original size:20 final size:18
Alignment explanation
Indices: 28155--28244 Score: 65
Period size: 20 Copynumber: 4.6 Consensus size: 18
28145 TACCAGTTTC
28155 ATGTATCGATACAATTCAGT
1 ATGTATCGATACAA-TCA-T
* * *
28175 ATGTATCGATATAATGAAC
1 ATGTATCGATACAAT-CAT
*
28194 ATGTATCGATACAAAGCAT
1 ATGTATCGATAC-AATCAT
28213 AATGTATCGATAC-ATCTGGAT
1 -ATGTATCGATACAATC---AT
28234 ATGTATCGATA
1 ATGTATCGATA
28245 TTTTCTAGGA
Statistics
Matches: 56, Mismatches: 8, Indels: 12
0.74 0.11 0.16
Matches are distributed among these distances:
18 2 0.04
19 13 0.23
20 39 0.70
21 2 0.04
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.32
Consensus pattern (18 bp):
ATGTATCGATACAATCAT
Found at i:36988 original size:20 final size:20
Alignment explanation
Indices: 36965--37013 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
36955 ACAATGTGTT
36965 GATACTTTTTAC-CATGTATC
1 GATACTTTTT-CTCATGTATC
** *
36985 GATACAATGTCTCATGTATC
1 GATACTTTTTCTCATGTATC
37005 GATACTTTT
1 GATACTTTT
37014 CACTTAGGGT
Statistics
Matches: 22, Mismatches: 6, Indels: 2
0.73 0.20 0.07
Matches are distributed among these distances:
19 1 0.05
20 21 0.95
ACGTcount: A:0.27, C:0.18, G:0.12, T:0.43
Consensus pattern (20 bp):
GATACTTTTTCTCATGTATC
Found at i:37082 original size:19 final size:19
Alignment explanation
Indices: 37039--37094 Score: 85
Period size: 19 Copynumber: 2.9 Consensus size: 19
37029 CTGCCAGTTT
37039 CATGTATCGATACAATTGAA
1 CATGTATCGATACAA-TGAA
* *
37059 TATGTATCAATACAATGAA
1 CATGTATCGATACAATGAA
37078 CATGTATCGATACAATG
1 CATGTATCGATACAATG
37095 TATCAATACA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 19 0.59
20 13 0.41
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.30
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:42780 original size:79 final size:80
Alignment explanation
Indices: 42697--42964 Score: 294
Period size: 80 Copynumber: 3.4 Consensus size: 80
42687 AATAAAATCG
* * ** *
42697 GGGTTGGGGTATCCCCGATGGTGGAAAATTAGTGTTTTGAAAAT-AAAACCGGGGTTAAAGTATT
1 GGGTTGGAGTATCCCCGATTGTGGAAAATTAGTGTTTTGAAAATAAAAACCGGGGTTGGAGTATC
*
42761 CCCTCAGAAATAATA
66 CCCTCAGAAATAACA
* ** * * *
42776 GGGTTGGAGTATCCTCGATTGTTAAAAATTTGTGTTTT-AGAAATAAAAATCGAGGTTGGAGTAT
1 GGGTTGGAGTATCCCCGATTGTGGAAAATTAGTGTTTTGA-AAATAAAAACCGGGGTTGGAGTAT
42840 CCCCTCA-AAACTAACA
65 CCCCTCAGAAA-TAACA
* * * * * *
42856 GGGTTGGAGTATCCTCGATTGT-GAAAAATCGATGTTCTGAAAATAAAAACCAGGGTTGGAGTAA
1 GGGTTGGAGTATCCCCGATTGTGGAAAATTAG-TGTTTTGAAAATAAAAACCGGGGTTGGAGTAT
42920 CCCCTC-GAAAATAACA
65 CCCCTCAG-AAATAACA
*
42936 GGGTTAGAGTATCCCCGATTGTGGAAAAT
1 GGGTTGGAGTATCCCCGATTGTGGAAAAT
42965 CGACATTTTA
Statistics
Matches: 158, Mismatches: 23, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 45 0.28
80 103 0.65
81 9 0.06
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.28
Consensus pattern (80 bp):
GGGTTGGAGTATCCCCGATTGTGGAAAATTAGTGTTTTGAAAATAAAAACCGGGGTTGGAGTATC
CCCTCAGAAATAACA
Found at i:42817 original size:130 final size:132
Alignment explanation
Indices: 42577--42843 Score: 346
Period size: 130 Copynumber: 2.0 Consensus size: 132
42567 TGGAGTACAT
* * *
42577 TCCCCGATGATGGAAAATTGATGTTTTGGAAATAAAAATCGGGGTTAGAGTATCCCCTCGAAAAT
1 TCCCCGATGATGGAAAATTGATGTTTTGAAAATAAAAACCGGGGTTAAAGTATCCCCTCGAAAAT
* *
42642 AACAGAGTTGGAGTATCCCCGATTGTGAAAAATCGATGTACTAGAAAT-AAAATCGGGGTTGGGG
66 AACAGAGTTGGAGTATCCCCGATTGTGAAAAATCGATGTACTAGAAATAAAAATCGAGGTTGGAG
42706 TA
131 TA
* *
42708 TCCCCGATGGTGGAAAATT-AGTGTTTTGAAAAT-AAAACCGGGGTTAAAGTATTCCCTC-AGAA
1 TCCCCGATGATGGAAAATTGA-TGTTTTGAAAATAAAAACCGGGGTTAAAGTATCCCCTCGA-AA
* * * * * **
42770 ATAATAGGGTTGGAGTATCCTCGATTGTTAAAAATTTG-TGTTTTAGAAATAAAAATCGAGGTTG
64 ATAACAGAGTTGGAGTATCCCCGATTGTGAAAAA-TCGATGTACTAGAAATAAAAATCGAGGTTG
42834 GAGTA
128 GAGTA
42839 TCCCC
1 TCCCC
42844 TCAAAACTAA
Statistics
Matches: 118, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
129 1 0.01
130 65 0.55
131 52 0.44
ACGTcount: A:0.34, C:0.13, G:0.24, T:0.28
Consensus pattern (132 bp):
TCCCCGATGATGGAAAATTGATGTTTTGAAAATAAAAACCGGGGTTAAAGTATCCCCTCGAAAAT
AACAGAGTTGGAGTATCCCCGATTGTGAAAAATCGATGTACTAGAAATAAAAATCGAGGTTGGAG
TA
Found at i:42983 original size:160 final size:159
Alignment explanation
Indices: 42697--42984 Score: 348
Period size: 160 Copynumber: 1.8 Consensus size: 159
42687 AATAAAATCG
* * * * * **
42697 GGGTTGGGGTATCCCCGATGGTGGAAAATTAGTGTTTTGAAAATAAAACCGGGGTTAAAGTATTC
1 GGGTTGGAGTATCCCCGATGGTGAAAAATGAGTGTTCTGAAAATAAAACCAGGGTTAAAGTAACC
* * * * * **
42762 CCTCAGAAATAATAGGGTTGGAGTATCCTCGATTGTTAAAAATTTGTGTTTTAGAAATAAAAATC
66 CCTCAGAAATAACAGGGTTAGAGTATCCCCGATTGTGAAAAATTCGCATTTTAGAAATAAAAATC
42827 GAGGTTGGAGTATCCCCTCAAAACTAACA
131 GAGGTTGGAGTATCCCCTCAAAACTAACA
* * **
42856 GGGTTGGAGTATCCTCGATTGTGAAAAATCGA-TGTTCTGAAAATAAAAACCAGGGTTGGAGTAA
1 GGGTTGGAGTATCCCCGATGGTGAAAAAT-GAGTGTTCTGAAAAT-AAAACCAGGGTTAAAGTAA
*
42920 CCCCTC-GAAAATAACAGGGTTAGAGTATCCCCGATTGTGGAAAA-TCGACATTTTAGAAATAAA
64 CCCCTCAG-AAATAACAGGGTTAGAGTATCCCCGATTGTGAAAAATTCG-CATTTTAGAAATAAA
42983 AA
127 AA
42985 CATGAATGAA
Statistics
Matches: 106, Mismatches: 19, Indels: 7
0.80 0.14 0.05
Matches are distributed among these distances:
159 39 0.37
160 67 0.63
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (159 bp):
GGGTTGGAGTATCCCCGATGGTGAAAAATGAGTGTTCTGAAAATAAAACCAGGGTTAAAGTAACC
CCTCAGAAATAACAGGGTTAGAGTATCCCCGATTGTGAAAAATTCGCATTTTAGAAATAAAAATC
GAGGTTGGAGTATCCCCTCAAAACTAACA
Found at i:44923 original size:37 final size:37
Alignment explanation
Indices: 44876--44951 Score: 116
Period size: 37 Copynumber: 2.1 Consensus size: 37
44866 AGGATTCTCG
* *
44876 AAGGATTTTTTTGCTGCTGAAACTTTGTTTTCTACCA
1 AAGGATTTTTTTGCTACTGAAACTTTGTTTGCTACCA
* *
44913 AAGGGTTTTTTTGCTACTGAAACTTTGTTTGCTGCCA
1 AAGGATTTTTTTGCTACTGAAACTTTGTTTGCTACCA
44950 AA
1 AA
44952 AATATCCTCT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.22, C:0.16, G:0.18, T:0.43
Consensus pattern (37 bp):
AAGGATTTTTTTGCTACTGAAACTTTGTTTGCTACCA
Found at i:44943 original size:18 final size:18
Alignment explanation
Indices: 44885--44945 Score: 52
Period size: 18 Copynumber: 3.3 Consensus size: 18
44875 GAAGGATTTT
*
44885 TTTGCTGCTGAAACTTTG
1 TTTGCTACTGAAACTTTG
* * * *
44903 TTTTCTAC-CAAAGGGTTTT
1 TTTGCTACTGAAA--CTTTG
44922 TTTGCTACTGAAACTTTG
1 TTTGCTACTGAAACTTTG
44940 TTTGCT
1 TTTGCT
44946 GCCAAAAATA
Statistics
Matches: 31, Mismatches: 9, Indels: 6
0.67 0.20 0.13
Matches are distributed among these distances:
17 3 0.10
18 15 0.48
19 10 0.32
20 3 0.10
ACGTcount: A:0.18, C:0.16, G:0.18, T:0.48
Consensus pattern (18 bp):
TTTGCTACTGAAACTTTG
Found at i:48172 original size:19 final size:20
Alignment explanation
Indices: 48121--48193 Score: 78
Period size: 20 Copynumber: 3.7 Consensus size: 20
48111 CTGCCAATCT
*
48121 CATGTATCGATACAATTATC
1 CATGTATCGATACAATTATA
* *
48141 CACGTATCAATACAATTA-A
1 CATGTATCGATACAATTATA
**
48160 CATGTATCGATACAAAGCATA
1 CATGTATCGATAC-AATTATA
48181 -ATGTATCGATACA
1 CATGTATCGATACA
48194 TCTGGGTGTG
Statistics
Matches: 44, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
19 12 0.27
20 31 0.70
21 1 0.02
ACGTcount: A:0.41, C:0.19, G:0.11, T:0.29
Consensus pattern (20 bp):
CATGTATCGATACAATTATA
Found at i:50499 original size:22 final size:21
Alignment explanation
Indices: 50463--50509 Score: 62
Period size: 23 Copynumber: 2.2 Consensus size: 21
50453 TTCTGTTGAC
50463 GATTTTGATG-AAAAATGAAA
1 GATTTTGATGAAAAAATGAAA
50483 GATTTTGAAGTGAAAAAATGAAA
1 GATTTTG-A-TGAAAAAATGAAA
50506 -ATTT
1 GATTT
50510 GTGGAAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.29
21 1 0.04
22 6 0.25
23 10 0.42
ACGTcount: A:0.49, C:0.00, G:0.19, T:0.32
Consensus pattern (21 bp):
GATTTTGATGAAAAAATGAAA
Found at i:50649 original size:13 final size:13
Alignment explanation
Indices: 50631--50656 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
50621 TAGTACCCAC
50631 TGTATCGATACAA
1 TGTATCGATACAA
50644 TGTATCGATACAA
1 TGTATCGATACAA
50657 GGAATATTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:50800 original size:24 final size:22
Alignment explanation
Indices: 50772--50820 Score: 55
Period size: 21 Copynumber: 2.2 Consensus size: 22
50762 ATCACACAAC
*
50772 AAATTTAAACACCAAAATCATCCA
1 AAATTT-AACA-CAAAATCATCAA
*
50796 AAA-TTAAGACAAAATCATCAA
1 AAATTTAACACAAAATCATCAA
50817 AAAT
1 AAAT
50821 CACTTTATCA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
21 14 0.64
22 3 0.14
23 2 0.09
24 3 0.14
ACGTcount: A:0.59, C:0.18, G:0.02, T:0.20
Consensus pattern (22 bp):
AAATTTAACACAAAATCATCAA
Found at i:52635 original size:13 final size:13
Alignment explanation
Indices: 52617--52642 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
52607 TACACAAAGT
52617 ATGTATCGATACA
1 ATGTATCGATACA
52630 ATGTATCGATACA
1 ATGTATCGATACA
52643 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:52640 original size:32 final size:33
Alignment explanation
Indices: 52599--52662 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
52589 TAGCCAAACT
**
52599 TGTATCGATACACAAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
52631 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
52663 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.59
33 12 0.41
ACGTcount: A:0.42, C:0.16, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:54835 original size:21 final size:21
Alignment explanation
Indices: 54797--54841 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
54787 TTGCAAGTTG
* *
54797 AAATAATGAATTTGGCTAATGA
1 AAATAATGAAGTTAGCTAA-GA
54819 AAATAATG-AGTTAGCTAAGA
1 AAATAATGAAGTTAGCTAAGA
54839 AAA
1 AAA
54842 ATAAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.51, C:0.04, G:0.18, T:0.27
Consensus pattern (21 bp):
AAATAATGAAGTTAGCTAAGA
Found at i:58895 original size:20 final size:20
Alignment explanation
Indices: 58852--58897 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
58842 AAATCTTTTG
58852 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
58873 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
58893 CAAAA
1 CAAAA
58898 CCAGTATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:60394 original size:23 final size:21
Alignment explanation
Indices: 60352--60395 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 21
60342 GTTTAATGTT
**
60352 TTTGCTTGACTTTGTGTTTTA
1 TTTGCTTGACTTTGAATTTTA
60373 TTTGCATTGTACTTTGAATTTTA
1 TTTGC-TTG-ACTTTGAATTTTA
60396 ATCTATAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 5 0.26
22 3 0.16
23 11 0.58
ACGTcount: A:0.16, C:0.09, G:0.16, T:0.59
Consensus pattern (21 bp):
TTTGCTTGACTTTGAATTTTA
Found at i:60644 original size:18 final size:18
Alignment explanation
Indices: 60621--60656 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
60611 GGGGGAGAAA
60621 GTACGAATTTGTTAAAAT
1 GTACGAATTTGTTAAAAT
60639 GTACGAATTTGTTAAAAT
1 GTACGAATTTGTTAAAAT
60657 TATTTTGATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.06, G:0.17, T:0.39
Consensus pattern (18 bp):
GTACGAATTTGTTAAAAT
Found at i:61334 original size:13 final size:13
Alignment explanation
Indices: 61316--61341 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
61306 TACACAAAGT
61316 ATGTATCGATACA
1 ATGTATCGATACA
61329 ATGTATCGATACA
1 ATGTATCGATACA
61342 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:61339 original size:32 final size:33
Alignment explanation
Indices: 61298--61361 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
61288 TAGCCAAACT
**
61298 TGTATCGATACACAAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
61330 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
61362 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.59
33 12 0.41
ACGTcount: A:0.42, C:0.16, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:66006 original size:13 final size:13
Alignment explanation
Indices: 65988--66015 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
65978 ATTACTCAAA
65988 TGTATCGATACAT
1 TGTATCGATACAT
66001 TGTATCGATACAT
1 TGTATCGATACAT
66014 TG
1 TG
66016 ATCTTTGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:70313 original size:13 final size:13
Alignment explanation
Indices: 70295--70325 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
70285 ACAATTCATC
70295 ATGTATCGATACA
1 ATGTATCGATACA
70308 ATGTATCGATACA
1 ATGTATCGATACA
*
70321 TTGTA
1 ATGTA
70326 CCATGTATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:70331 original size:33 final size:33
Alignment explanation
Indices: 70275--70341 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 33
70265 GTTACAAGCT
* *
70275 ATGTATCGATACAATTCATCATGTATCGATACA
1 ATGTATCGATACAATTCACCATGTATCAATACA
*
70308 ATGTATCGATAC-ATTGTACCATGTATCAATACA
1 ATGTATCGATACAATT-CACCATGTATCAATACA
70341 A
1 A
70342 ACAGTGGAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
32 3 0.10
33 27 0.90
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.33
Consensus pattern (33 bp):
ATGTATCGATACAATTCACCATGTATCAATACA
Found at i:70395 original size:20 final size:21
Alignment explanation
Indices: 70370--70410 Score: 75
Period size: 20 Copynumber: 2.0 Consensus size: 21
70360 CTGCTAATCT
70370 CATGTATCGATACAAT-TATC
1 CATGTATCGATACAATGTATC
70390 CATGTATCGATACAATGTATC
1 CATGTATCGATACAATGTATC
70411 GATACAAAGC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 16 0.80
21 4 0.20
ACGTcount: A:0.34, C:0.20, G:0.12, T:0.34
Consensus pattern (21 bp):
CATGTATCGATACAATGTATC
Found at i:70409 original size:13 final size:13
Alignment explanation
Indices: 70391--70417 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
70381 ACAATTATCC
70391 ATGTATCGATACA
1 ATGTATCGATACA
70404 ATGTATCGATACA
1 ATGTATCGATACA
70417 A
1 A
70418 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:70835 original size:21 final size:20
Alignment explanation
Indices: 70802--70845 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
70792 AGTTATTTAA
*
70802 AAAAAGAATAATAAAAAAATT
1 AAAAAGAAAAAT-AAAAAATT
* *
70823 AAAAATAAAAATAAATAATT
1 AAAAAGAAAAATAAAAAATT
70843 AAA
1 AAA
70846 TAAAGATATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.20
Consensus pattern (20 bp):
AAAAAGAAAAATAAAAAATT
Found at i:71718 original size:18 final size:18
Alignment explanation
Indices: 71695--71730 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
71685 ACTGCAACCA
71695 AAAGAAAAAATAACAAAG
1 AAAGAAAAAATAACAAAG
71713 AAAGAAAAAATAACAAAG
1 AAAGAAAAAATAACAAAG
71731 GAAAAGAGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.78, C:0.06, G:0.11, T:0.06
Consensus pattern (18 bp):
AAAGAAAAAATAACAAAG
Found at i:78492 original size:89 final size:87
Alignment explanation
Indices: 78391--78555 Score: 206
Period size: 88 Copynumber: 1.9 Consensus size: 87
78381 ACATTTGTAG
* ** *
78391 TTTTGATAACATTCATATTTGCATCATTTCAT-GTGCATTTGCTTTTTTTATTTATCCCTACATT
1 TTTTGATAACATTCATATTTGCATCATCTCATAG-GCATTTGC-CATTTTATTGATCCCTACATT
78455 TGCATCATTTCACCTACAATTGCA
64 TGCATCATTTCACCTACAATTGCA
* ** * * *
78479 TTTTAGATGACATTGGTATTTGCATCATCTCATAGGCATTTGCCATTTTATTGATGCTTGCATTT
1 TTTT-GATAACATTCATATTTGCATCATCTCATAGGCATTTGCCATTTTATTGATCCCTACATTT
78544 GCATCATTTCAC
65 GCATCATTTCAC
78556 GCATATATGC
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
88 32 0.49
89 32 0.49
90 1 0.02
ACGTcount: A:0.23, C:0.19, G:0.12, T:0.46
Consensus pattern (87 bp):
TTTTGATAACATTCATATTTGCATCATCTCATAGGCATTTGCCATTTTATTGATCCCTACATTTG
CATCATTTCACCTACAATTGCA
Found at i:79341 original size:47 final size:47
Alignment explanation
Indices: 79269--79671 Score: 275
Period size: 47 Copynumber: 8.6 Consensus size: 47
79259 CCGAAGAAAT
* * * * *
79269 TCTTTCCACCCTCGTTTGACCGTATTGGCATTAGGGCCTGGTCAAAC
1 TCTTTCCACTCTCATTTGACTGTATTGGCATTAGGACCTAGTCAAAC
* *
79316 TCTTTCCACTCTCATTTGACTGTATTGGCGTTAGAACCTAGTCAAAC
1 TCTTTCCACTCTCATTTGACTGTATTGGCATTAGGACCTAGTCAAAC
* * * *
79363 TCTTT--A-TCCTCATTCGACTGTATTGGCGTTAAGACCTGGTCAAAC
1 TCTTTCCACT-CTCATTTGACTGTATTGGCATTAGGACCTAGTCAAAC
* * * * *
79408 TC-TTCTTATTCTCGTTTGATTGTATTGGCATTAAGACCTAGTCAAAC
1 TCTTTC-CACTCTCATTTGACTGTATTGGCATTAGGACCTAGTCAAAC
* * *
79455 GC-TTCTCACAT-TCATTTGACTATATTGGCATTAGGACCTAGTCAAAA
1 TCTTTC-CAC-TCTCATTTGACTGTATTGGCATTAGGACCTAGTCAAAC
* * * * * * * *
79502 TCCTTT-TATTCTTATTTAACTGCATTGGCATTAGGGCTTGGTCAAAC
1 T-CTTTCCACTCTCATTTGACTGTATTGGCATTAGGACCTAGTCAAAC
** ** * *
79549 TCAAATCTTCCCTCATTTGACTGTATTGGCATTAGGACCTAGTTAAAC
1 TC-TTTCCACTCTCATTTGACTGTATTGGCATTAGGACCTAGTCAAAC
* ** * * * *
79597 TCTTAT-TA-TCCTTGTTTGACTATATTGGCGTTAGGACTTGGTCAAAC
1 TCTT-TCCACT-CTCATTTGACTGTATTGGCATTAGGACCTAGTCAAAC
* * * *
79644 TCTTTCCACCCTCGTTTGGCTGCATTGG
1 TCTTTCCACTCTCATTTGACTGTATTGG
79672 TGTTAGAACC
Statistics
Matches: 277, Mismatches: 64, Indels: 30
0.75 0.17 0.08
Matches are distributed among these distances:
44 3 0.01
45 36 0.13
46 3 0.01
47 196 0.71
48 37 0.13
49 2 0.01
ACGTcount: A:0.22, C:0.23, G:0.17, T:0.38
Consensus pattern (47 bp):
TCTTTCCACTCTCATTTGACTGTATTGGCATTAGGACCTAGTCAAAC
Found at i:79591 original size:95 final size:95
Alignment explanation
Indices: 79466--79645 Score: 254
Period size: 95 Copynumber: 1.9 Consensus size: 95
79456 CTTCTCACAT
* *
79466 TCATTTGACTATATTGGCATTAGGACCTAGTCAAAATCCTT-TTATTCTTATTTAACTGCATTGG
1 TCATTTGACTATATTGGCATTAGGACCTAGTCAAAAT-CTTATTATCCTTATTTAACTACATTGG
*
79530 CATTAGGGCTTGGTCAAACTCAAATCTTCCC
65 CATTAGGACTTGGTCAAACTCAAATCTTCCC
* * * * * *
79561 TCATTTGACTGTATTGGCATTAGGACCTAGTTAAACTCTTATTATCCTTGTTTGACTATATTGGC
1 TCATTTGACTATATTGGCATTAGGACCTAGTCAAAATCTTATTATCCTTATTTAACTACATTGGC
*
79626 GTTAGGACTTGGTCAAACTC
66 ATTAGGACTTGGTCAAACTC
79646 TTTCCACCCT
Statistics
Matches: 74, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
94 3 0.04
95 71 0.96
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.39
Consensus pattern (95 bp):
TCATTTGACTATATTGGCATTAGGACCTAGTCAAAATCTTATTATCCTTATTTAACTACATTGGC
ATTAGGACTTGGTCAAACTCAAATCTTCCC
Found at i:79851 original size:42 final size:42
Alignment explanation
Indices: 79775--79912 Score: 118
Period size: 42 Copynumber: 3.3 Consensus size: 42
79765 AGCTTAAAGG
* * * *
79775 CTTTTTTACCTTCAGTTTGCCTGTCGACTTTGACCTTAGAGA
1 CTTTCTTACCTTCAGTTTGCCTATCGACTCTGACCCTAGAGA
*
79817 CTTTCTTACCTTCAGTTTGCTTATCAGA-TCTGACCCTAGAGA
1 CTTTCTTACCTTCAGTTTGCCTATC-GACTCTGACCCTAGAGA
** * * * * * *
79859 CTAACTTATC-TCAAGTCTGCCTATTGGCTTTGACCCTAGAAA
1 CTTTCTTACCTTC-AGTTTGCCTATCGACTCTGACCCTAGAGA
*
79901 CTTTTTTACCTT
1 CTTTCTTACCTT
79913 TAGTCTGCTT
Statistics
Matches: 74, Mismatches: 18, Indels: 7
0.75 0.18 0.07
Matches are distributed among these distances:
41 3 0.04
42 68 0.92
43 3 0.04
ACGTcount: A:0.20, C:0.25, G:0.14, T:0.41
Consensus pattern (42 bp):
CTTTCTTACCTTCAGTTTGCCTATCGACTCTGACCCTAGAGA
Found at i:79880 original size:84 final size:84
Alignment explanation
Indices: 79792--81516 Score: 1063
Period size: 84 Copynumber: 20.6 Consensus size: 84
79782 ACCTTCAGTT
* * * * * * *
79792 TGCCTGTCGACTTTGACCTTAGAGACTTTCTTACCTTCAGTTTGCTTATCAGATCTGACCCTAGA
1 TGCCTATCGACTTTGACCTTGGAGACTTTCTTACCTTCAGTCTGCCTGTCAGCTTTGACCCTAGA
** *
79857 GACTAACTTATCTCAAGTC
66 GACTGTCTCATCTCAAGTC
* * * * * * * * * *
79876 TGCCTATTGGCTTTGACCCTAGAAACTTTTTTACCTTTAGTCTGCTTGTCAGCTTCGACCTTAGA
1 TGCCTATCGACTTTGACCTTGGAGACTTTCTTACCTTCAGTCTGCCTGTCAGCTTTGACCCTAGA
* *
79941 AACTGCCTCATCTCAAGTC
66 GACTGTCTCATCTCAAGTC
* * * * * * * * * *
79960 TACTTGTTGGCTTTGACCCTT--AAACTTTCGTACCTTCAGTCTGCCTTTCAGTTTTAACCCTAG
1 TGCCTATCGACTTTGA-CCTTGGAGACTTTCTTACCTTCAGTCTGCCTGTCAGCTTTGACCCTAG
* *
80023 AGATTGCCTCATCTCAAGTC
65 AGACTGTCTCATCTCAAGTC
** * * * * ** * *
80043 TATCTGTC-AGCTTTGACATTGGAGACTTTTTTACCTAT-AATCTGCCCATCGGCTTTAACCCTA
1 TGCCTATCGA-CTTTGACCTTGGAGACTTTCTTACCT-TCAGTCTGCCTGTCAGCTTTGACCCTA
*
80106 GAGACTGCCTCATCTCAAGTC
64 GAGACTGTCTCATCTCAAGTC
* * * * * *
80127 TGCCTATCGGCTTTGA-CTTGGAAGACTTTTTTACTTTCAGTCTGCCTGT-TGACTTTGA-CATT
1 TGCCTATCGACTTTGACCTTGG-AGACTTTCTTACCTTCAGTCTGCCTGTCAG-CTTTGACCCTA
* ** *
80189 GAAAACTACCTCATCTTAAGTC
64 G-AGACTGTCTCATCTCAAGTC
* * * * * * * * *
80211 TACCTATCGACTTTGATCTTAGAGTCTTTTTTACCTTTAGTCTGCCTGTC-GACTGTGACCTTGG
1 TGCCTATCGACTTTGACCTTGGAGACTTTCTTACCTTCAGTCTGCCTGTCAG-CTTTGACCCTAG
* * * *
80275 AGACTTTCTTACCTTC-AGTT
65 AGACTGTCTCATC-TCAAGTC
* * * * ** * * *
80295 TGCTTGTTGGCTTTGACCTTGGAGACTACCTCATC-TCAAGTCTACCTGTCAGCTTTGACCCTAG
1 TGCCTATCGACTTTGACCTTGGAGACTTTCTTACCTTC-AGTCTGCCTGTCAGCTTTGACCCTAG
* * *
80359 AGACTTTCTTACCTTCAA-TC
65 AGACTGTCTCATC-TCAAGTC
* ** ** * * * * * * *
80379 T-CCTTATTGGTTTTGACC-TGGAGACTACCTCATC-TCAAGTTTGCTTGTCAACTTTGACCTTG
1 TGCC-TATCGACTTTGACCTTGGAGACTTTCTTACCTTC-AGTCTGCCTGTCAGCTTTGACCCTA
* * *
80441 GAGACTTTCTTACCTTCAA-TC
64 GAGACTGTCTCATC-TCAAGTC
* * * * * * * *
80462 TGCCTATCGGCTTTAACCTTAGAGACTTTCTTAGCTTCAATCTACCTGT-TGACTTTGA-CCTTG
1 TGCCTATCGACTTTGACCTTGGAGACTTTCTTACCTTCAGTCTGCCTGTCAG-CTTTGACCCTAG
*
80525 AAGACTATCTCATCTCAAGTC
65 -AGACTGTCTCATCTCAAGTC
* * * * * * *
80546 TGCCTATTGACTTTAACCTTGGAGACCTTCTCACCTTCAGTTTGCCTATCAGCTTTAACCCTAGA
1 TGCCTATCGACTTTGACCTTGGAGACTTTCTTACCTTCAGTCTGCCTGTCAGCTTTGACCCTAGA
* * *
80611 GATTGCCTCATCTCAAGCC
66 GACTGTCTCATCTCAAGTC
* * * * * *
80630 TACTTGTC-AGCTTTGATCTTGGAGACTTTTTTACCTTC-GTCTGCTTGTC-GACTTTGACCCTA
1 TGCCTATCGA-CTTTGACCTTGGAGACTTTCTTACCTTCAGTCTGCCTGTCAG-CTTTGACCCTA
* * * *
80692 AAGATTGTCTTATCTTAAGTC
64 GAGACTGTCTCATCTCAAGTC
** *
80713 TGCCTATCGACTTTGACCTTGGAGACTTTCTTACC-TCAAGTCTGCCTACCAGCTTTGACCCTGG
1 TGCCTATCGACTTTGACCTTGGAGACTTTCTTACCTTC-AGTCTGCCTGTCAGCTTTGACCCTAG
* *
80777 AGACTTTCTTATCTTC-AGTC
65 AGACTGTCTCATC-TCAAGTC
* * * * **
80797 TACCTATC-AGCTTTGACCTTGGAGACTTTCTTACCTTCAATCTACTTGTTGGCTTTGACCCT-G
1 TGCCTATCGA-CTTTGACCTTGGAGACTTTCTTACCTTCAGTCTGCCTGTCAGCTTTGACCCTAG
*
80860 AAGACTGCCTCATCTCAAGTC
65 -AGACTGTCTCATCTCAAGTC
* * * * * *
80881 TGCCTATAGACTTTAACCCTGGAGACTTTCTTACCTTCAGTCTGCCTATCAGCTTTGACCTTGGA
1 TGCCTATCGACTTTGACCTTGGAGACTTTCTTACCTTCAGTCTGCCTGTCAGCTTTGACCCTAGA
* * *
80946 GATTGCCTCATCTCAAGTT
66 GACTGTCTCATCTCAAGTC
* * * * * * * * *
80965 TGCTTATC-ATCTTTGATCTTGGAGACTTTTTTACCTTTAGTTTGCTTGTCGGCTTTGACCATAA
1 TGCCTATCGA-CTTTGACCTTGGAGACTTTCTTACCTTCAGTCTGCCTGTCAGCTTTGACCCTAG
* * *
81029 AGATTGTCTTATCTTAAGTC
65 AGACTGTCTCATCTCAAGTC
* * * * *
81049 TACCTATCGGCTTTGACCTTGGAGACTTTCTTA-CTTCAAGTCTGCCTATCAGCTTTGACCTTGG
1 TGCCTATCGACTTTGACCTTGGAGACTTTCTTACCTTC-AGTCTGCCTGTCAGCTTTGACCCTAG
* * *
81113 AGACTATCTTACTTTC-AGTC
65 AGACTGTCTCA-TCTCAAGTC
* * * * * * * *
81133 TGCTTGTCAACTTTGACC-TAGAGACTTTCTTACCTTTAGTCTGCCTGTCAGCTTTGACCTTGGG
1 TGCCTATCGACTTTGACCTTGGAGACTTTCTTACCTTCAGTCTGCCTGTCAGCTTTGACCCTAGA
* * *
81197 GACTTTCTTACCTTC-AGTC
66 GACTGTCTCATC-TCAAGTC
* * * * *
81216 TGCTTGTC-AGCTTTGACCTTGGAGACTTT-TTAACCTTTAGTCT-ACTGTCGGCTTTGACCCTA
1 TGCCTATCGA-CTTTGACCTTGGAGACTTTCTT-ACCTTCAGTCTGCCTGTCAGCTTTGACCCTA
*
81278 GAGACTATCTCATCTCAAGTC
64 GAGACTGTCTCATCTCAAGTC
* * * * * * * * ** *
81299 TACTTGTCAACTTTGACCCTAGAGACTTTCTTACTTTCAGTCTGCTTGTTGGCTTTAACCCTAGA
1 TGCCTATCGACTTTGACCTTGGAGACTTTCTTACCTTCAGTCTGCCTGTCAGCTTTGACCCTAGA
*
81364 GACTGCCTCATCTCAAGTC
66 GACTGTCTCATCTCAAGTC
* * * * * * *
81383 TGCCTGTC-AGCTTTGATCC-TAGAGACTTTCTTACCTTCAGTTTACCTGTCGGCTTTGACCTTG
1 TGCCTATCGA-CTTTGA-CCTTGGAGACTTTCTTACCTTCAGTCTGCCTGTCAGCTTTGACCCTA
* * * *
81446 GAGATTGCCTCATCTCAAATA
64 GAGACTGTCTCATCTCAAGTC
* **
81467 TGCTTATCGGTTTTGACCTTGGAGACTTTCTTACC-TCAAGTCTGCCTGTC
1 TGCCTATCGACTTTGACCTTGGAGACTTTCTTACCTTC-AGTCTGCCTGTC
81517 GGTTTTAACC
Statistics
Matches: 1300, Mismatches: 284, Indels: 114
0.77 0.17 0.07
Matches are distributed among these distances:
82 9 0.01
83 360 0.28
84 900 0.69
85 31 0.02
ACGTcount: A:0.20, C:0.26, G:0.16, T:0.38
Consensus pattern (84 bp):
TGCCTATCGACTTTGACCTTGGAGACTTTCTTACCTTCAGTCTGCCTGTCAGCTTTGACCCTAGA
GACTGTCTCATCTCAAGTC
Found at i:80169 original size:42 final size:42
Alignment explanation
Indices: 80123--81575 Score: 620
Period size: 42 Copynumber: 34.7 Consensus size: 42
80113 CCTCATCTCA
* * *
80123 AGTCTGCCTATCGGCTTTGA-CTTGGAAGACTTTTTTACTTTC
1 AGTCTGCCTGTCGACTTTGACCTTGG-AGACTTTCTTACTTTC
* * * * ** * *
80165 AGTCTGCCTGTTGACTTTGACATTGAAAACTACCTCA-TCTTA
1 AGTCTGCCTGTCGACTTTGACCTTGGAGACTTTCTTACT-TTC
* * * * * *
80207 AGTCTACCTATCGACTTTGATCTTAGAGTCTTTTTTACCTTT-
1 AGTCTGCCTGTCGACTTTGACCTTGGAGACTTTCTTA-CTTTC
* *
80249 AGTCTGCCTGTCGACTGTGACCTTGGAGACTTTCTTACCTTC
1 AGTCTGCCTGTCGACTTTGACCTTGGAGACTTTCTTACTTTC
* * * * ** * *
80291 AGTTTGCTTGTTGGCTTTGACCTTGGAGACTACCTCA-TCTC
1 AGTCTGCCTGTCGACTTTGACCTTGGAGACTTTCTTACTTTC
* * * *
80332 AAGTCTACCTGTC-AGCTTTGACCCTAGAGACTTTCTTACCTTC
1 -AGTCTGCCTGTCGA-CTTTGACCTTGGAGACTTTCTTACTTTC
* * * ** ** * *
80375 AATCT-CCTTATTGGTTTTGACC-TGGAGACTACCTCA-TCTC
1 AGTCTGCC-TGTCGACTTTGACCTTGGAGACTTTCTTACTTTC
* * * *
80415 AAGTTTGCTTGTCAACTTTGACCTTGGAGACTTTCTTACCTTC
1 -AGTCTGCCTGTCGACTTTGACCTTGGAGACTTTCTTACTTTC
* * * * *
80458 AATCTGCCTATCGGCTTTAACCTTAGAGACTTTCTTAGC-TTC
1 AGTCTGCCTGTCGACTTTGACCTTGGAGACTTTCTTA-CTTTC
* * * * * * *
80500 AATCTACCTGTTGACTTTGACCTTGAAGACTATCTCA-TCTC
1 AGTCTGCCTGTCGACTTTGACCTTGGAGACTTTCTTACTTTC
* * * * * *
80541 AAGTCTGCCTATTGACTTTAACCTTGGAGACCTTCTCACCTTC
1 -AGTCTGCCTGTCGACTTTGACCTTGGAGACTTTCTTACTTTC
* * * * * * * *
80584 AGTTTGCCTATC-AGCTTTAACCCTAGAGA-TTGCCT-CATCTC
1 AGTCTGCCTGTCGA-CTTTGACCTTGGAGACTTTCTTAC-TTTC
* * * * * *
80625 AAGCCTACTTGTC-AGCTTTGATCTTGGAGACTTTTTTACCTTC
1 -AGTCTGCCTGTCGA-CTTTGACCTTGGAGACTTTCTTACTTTC
* * ** *
80668 -GTCTGCTTGTCGACTTTGACCCTAAAGA-TTGTCTTA-TCTTA
1 AGTCTGCCTGTCGACTTTGACCTTGGAGACTT-TCTTACT-TTC
* *
80709 AGTCTGCCTATCGACTTTGACCTTGGAGACTTTCTTAC-CTC
1 AGTCTGCCTGTCGACTTTGACCTTGGAGACTTTCTTACTTTC
* * *
80750 AAGTCTGCCT-ACCAGCTTTGACCCTGGAGACTTTCTTA-TCTTC
1 -AGTCTGCCTGTCGA-CTTTGACCTTGGAGACTTTCTTACT-TTC
* * *
80793 AGTCTACCTATC-AGCTTTGACCTTGGAGACTTTCTTACCTTC
1 AGTCTGCCTGTCGA-CTTTGACCTTGGAGACTTTCTTACTTTC
* * * * * * * ** * *
80835 AATCTACTTGTTGGCTTTGACCCTGAAGACTGCCTCA-TCTC
1 AGTCTGCCTGTCGACTTTGACCTTGGAGACTTTCTTACTTTC
* * * * *
80876 AAGTCTGCCTATAGACTTTAACCCTGGAGACTTTCTTACCTTC
1 -AGTCTGCCTGTCGACTTTGACCTTGGAGACTTTCTTACTTTC
* * * *
80919 AGTCTGCCTATC-AGCTTTGACCTTGGAGA-TTGCCT-CATCTC
1 AGTCTGCCTGTCGA-CTTTGACCTTGGAGACTTTCTTAC-TTTC
* * * * *
80960 AAGTTTGCTTATC-ATCTTTGATCTTGGAGACTTTTTTACCTTT-
1 -AGTCTGCCTGTCGA-CTTTGACCTTGGAGACTTTCTTA-CTTTC
* * * * ** *
81003 AGTTTGCTTGTCGGCTTTGACCATAAAGA-TTGTCTTA-TCTTA
1 AGTCTGCCTGTCGACTTTGACCTTGGAGACTT-TCTTACT-TTC
* * *
81045 AGTCTACCTATCGGCTTTGACCTTGGAGACTTTCTTAC-TTC
1 AGTCTGCCTGTCGACTTTGACCTTGGAGACTTTCTTACTTTC
* *
81086 AAGTCTGCCTATC-AGCTTTGACCTTGGAGACTATCTTACTTTC
1 -AGTCTGCCTGTCGA-CTTTGACCTTGGAGACTTTCTTACTTTC
* * *
81129 AGTCTGCTTGTCAACTTTGACC-TAGAGACTTTCTTACCTTT-
1 AGTCTGCCTGTCGACTTTGACCTTGGAGACTTTCTTA-CTTTC
* *
81170 AGTCTGCCTGTC-AGCTTTGACCTTGGGGACTTTCTTACCTTC
1 AGTCTGCCTGTCGA-CTTTGACCTTGGAGACTTTCTTACTTTC
*
81212 AGTCTGCTTGTC-AGCTTTGACCTTGGAGACTTT-TTAACCTTT-
1 AGTCTGCCTGTCGA-CTTTGACCTTGGAGACTTTCTT-A-CTTTC
* * * * * * *
81254 AGTCT-ACTGTCGGCTTTGACCCTAGAGACTATCTCA-TCTC
1 AGTCTGCCTGTCGACTTTGACCTTGGAGACTTTCTTACTTTC
* * * * *
81294 AAGTCTACTTGTCAACTTTGACCCTAGAGACTTTCTTACTTTC
1 -AGTCTGCCTGTCGACTTTGACCTTGGAGACTTTCTTACTTTC
* * * * * * ** * *
81337 AGTCTGCTTGTTGGCTTTAACCCTAGAGACTGCCTCA-TCTC
1 AGTCTGCCTGTCGACTTTGACCTTGGAGACTTTCTTACTTTC
* *
81378 AAGTCTGCCTGTC-AGCTTTGATCC-TAGAGACTTTCTTACCTTC
1 -AGTCTGCCTGTCGA-CTTTGA-CCTTGGAGACTTTCTTACTTTC
* * * * * *
81421 AGTTTACCTGTCGGCTTTGACCTTGGAGA-TTGCCT-CATCTC
1 AGTCTGCCTGTCGACTTTGACCTTGGAGACTTTCTTAC-TTTC
* * * * ** *
81462 AAATATGCTTATCGGTTTTGACCTTGGAGACTTTCTTAC-CTC
1 -AGTCTGCCTGTCGACTTTGACCTTGGAGACTTTCTTACTTTC
** * *
81504 AAGTCTGCCTGTCGGTTTTAACCTTGGAGACTTTCTTACCTTC
1 -AGTCTGCCTGTCGACTTTGACCTTGGAGACTTTCTTACTTTC
* * * * *
81547 AGTCTACTTGTCAACATTGACCATGGAGA
1 AGTCTGCCTGTCGACTTTGACCTTGGAGA
81576 TTGCCTGTCT
Statistics
Matches: 1049, Mismatches: 285, Indels: 154
0.70 0.19 0.10
Matches are distributed among these distances:
39 2 0.00
40 9 0.01
41 154 0.15
42 829 0.79
43 49 0.05
44 5 0.00
45 1 0.00
ACGTcount: A:0.19, C:0.26, G:0.17, T:0.38
Consensus pattern (42 bp):
AGTCTGCCTGTCGACTTTGACCTTGGAGACTTTCTTACTTTC
Found at i:80434 original size:83 final size:84
Alignment explanation
Indices: 80249--80488 Score: 286
Period size: 83 Copynumber: 2.9 Consensus size: 84
80239 TTTTACCTTT
* * * * * * * * *
80249 AGTCTGCCTGTCGACTGTGACCTTGGAGACTTTCTTACCTTCAGTTTGCTTGTTGGCTTTGACCT
1 AGTCTACCTGTCAACTTTGACCCTAGAGACTTTCTTACCTTCAATCTCCTTATTGGCTTTGACCT
80314 TGGAGACTACCTCATCTCA
66 TGGAGACTACCTCATCTCA
* *
80333 AGTCTACCTGTCAGCTTTGACCCTAGAGACTTTCTTACCTTCAATCTCCTTATTGGTTTTGACC-
1 AGTCTACCTGTCAACTTTGACCCTAGAGACTTTCTTACCTTCAATCTCCTTATTGGCTTTGACCT
80397 TGGAGACTACCTCATCTCA
66 TGGAGACTACCTCATCTCA
* * * * * * *
80416 AGTTTGCTTGTCAACTTTGACCTTGGAGACTTTCTTACCTTCAATCTGCC-TATCGGCTTTAACC
1 AGTCTACCTGTCAACTTTGACCCTAGAGACTTTCTTACCTTCAATCT-CCTTATTGGCTTTGACC
*
80480 TTAGAGACT
65 TTGGAGACT
80489 TTCTTAGCTT
Statistics
Matches: 133, Mismatches: 21, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
83 71 0.53
84 62 0.47
ACGTcount: A:0.19, C:0.27, G:0.17, T:0.37
Consensus pattern (84 bp):
AGTCTACCTGTCAACTTTGACCCTAGAGACTTTCTTACCTTCAATCTCCTTATTGGCTTTGACCT
TGGAGACTACCTCATCTCA
Found at i:80622 original size:293 final size:292
Alignment explanation
Indices: 79991--80832 Score: 827
Period size: 293 Copynumber: 2.9 Consensus size: 292
79981 AAACTTTCGT
* * * *
79991 ACCTTCAGTCTGCCTTTCAGTTTTAACCCTAGAGATTGCCTCATCTCAAGTCTATCTGTCAGCTT
1 ACCTTCAGTTTGCCTATCAGCTTTAACCCTAGAGATTGCCTCATCTCAAGTCTACCTGTCAGCTT
* * *
80056 TGACATTGGAGACTTTTTTACCTAT-AATCTGCC-CATCGGCTTTAACCCTAGAGACTGCCTCAT
66 TGACCTTGGAGACTTTTTTACCT-TCAATCT-CCTTATCGGCTTTGACCCTAGAGACTGCCTCAT
* * * * * * *
80119 CTCAAGTCTGCCTATCGGCTTTGA-CTTGGAAGACTTTTTTACTTTCAGTCTGCCTGTTGACTTT
129 CTCAAGTCTGCCTATCGACTTTGACCTTGG-AGACTTTCTTACCTTCAATCTGCCTATCGGCTTT
* * ** * * * * * * *
80183 GACATTGAAAACTACCTCATCTT-AAGTCTACCTATCGACTTTGATCTT-AGAGTCTTTTTTACC
193 GACCTTG-AGACTTTCTTATCTTCAA-TCTACCT-TTGACTTTGACCTTGA-AGACTATCTCACC
** * * * *
80246 TTTAGTCTGCCTGTCGACTGTGACCTTGGAGACTTTCTT
254 TCAAGTCTGCCTATCGACTGTAACCTTGGAGACCTTCTC
* * ** * * * * *
80285 ACCTTCAGTTTGCTTGTTGGCTTTGACCTTGGAGACTACCTCATCTCAAGTCTACCTGTCAGCTT
1 ACCTTCAGTTTGCCTATCAGCTTTAACCCTAGAGATTGCCTCATCTCAAGTCTACCTGTCAGCTT
* * * * * * *
80350 TGACCCTAGAGACTTTCTTACCTTCAATCTCCTTATTGGTTTTGA-CCTGGAGACTACCTCATCT
66 TGACCTTGGAGACTTTTTTACCTTCAATCTCCTTATCGGCTTTGACCCTAGAGACTGCCTCATCT
* * * * *
80414 CAAGTTTGCTTGTCAACTTTGACCTTGGAGACTTTCTTACCTTCAATCTGCCTATCGGCTTTAAC
131 CAAGTCTGCCTATCGACTTTGACCTTGGAGACTTTCTTACCTTCAATCTGCCTATCGGCTTTGAC
* *
80479 CTTAGAGACTTTCTTAGCTTCAATCTACCTGTTGACTTTGACCTTGAAGACTATCTCATCTCAAG
196 CTT-GAGACTTTCTTATCTTCAATCTACCT-TTGACTTTGACCTTGAAGACTATCTCACCTCAAG
* *
80544 TCTGCCTATTGACTTTAACCTTGGAGACCTTCTC
259 TCTGCCTATCGACTGTAACCTTGGAGACCTTCTC
* *
80578 ACCTTCAGTTTGCCTATCAGCTTTAACCCTAGAGATTGCCTCATCTCAAGCCTACTTGTCAGCTT
1 ACCTTCAGTTTGCCTATCAGCTTTAACCCTAGAGATTGCCTCATCTCAAGTCTACCTGTCAGCTT
* * * * * * * * *
80643 TGATCTTGGAGACTTTTTTACCTTC-GTCTGCTTGTCGACTTTGACCCTAAAGATTGTCTTATCT
66 TGACCTTGGAGACTTTTTTACCTTCAATCTCCTTATCGGCTTTGACCCTAGAGACTGCCTCATCT
* * *
80707 TAAGTCTGCCTATCGACTTTGACCTTGGAGACTTTCTTACC-TCAAGTCTGCCTACCAGCTTTGA
131 CAAGTCTGCCTATCGACTTTGACCTTGGAGACTTTCTTACCTTCAA-TCTGCCTATCGGCTTTGA
* * * * * * *
80771 CCCTGGAGACTTTCTTATCTTCAGTCTACCTATCAGCTTTGACCTTGGAGACTTTCTTACCT
195 -CCTTGAGACTTTCTTATCTTCAATCTACCTTTGA-CTTTGACCTTGAAGACTATCTCACCT
80833 TCAATCTACT
Statistics
Matches: 438, Mismatches: 100, Indels: 21
0.78 0.18 0.04
Matches are distributed among these distances:
292 19 0.04
293 322 0.74
294 97 0.22
ACGTcount: A:0.20, C:0.27, G:0.16, T:0.38
Consensus pattern (292 bp):
ACCTTCAGTTTGCCTATCAGCTTTAACCCTAGAGATTGCCTCATCTCAAGTCTACCTGTCAGCTT
TGACCTTGGAGACTTTTTTACCTTCAATCTCCTTATCGGCTTTGACCCTAGAGACTGCCTCATCT
CAAGTCTGCCTATCGACTTTGACCTTGGAGACTTTCTTACCTTCAATCTGCCTATCGGCTTTGAC
CTTGAGACTTTCTTATCTTCAATCTACCTTTGACTTTGACCTTGAAGACTATCTCACCTCAAGTC
TGCCTATCGACTGTAACCTTGGAGACCTTCTC
Found at i:81581 original size:126 final size:126
Alignment explanation
Indices: 79742--81575 Score: 923
Period size: 126 Copynumber: 14.6 Consensus size: 126
79732 ACTGCCTCAT
* * * * * * * * *
79742 CTCAAGTCTGCTTATCGGCTTTGAGCTTAAAGGCTTTTTTACCTTCAGTTTGCCTGTC-GACTTT
1 CTCAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTACCTTCAGTCTACCTGTCAG-CTTT
* * * * * * * * ** *
79806 GACCTTAGAGACTTTCTTACCTTC-AGTTTGCTTATCAGATCTGACCCTAGAGACTAACTTAT
65 GACCTTGGAGACTTTCTTATC-TCAAGTCTGCTTATCGGCTTTGACCTTGGAGACTTTCTTAC
* * * * * * * *
79868 CTCAAGTCTGCCTATTGGCTTTGACCCTAGAAACTTTTTTACCTTTAGTCTGCTTGTCAGCTTCG
1 CTCAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTACCTTCAGTCTACCTGTCAGCTTTG
* * ** * * * * * *
79933 ACCTTAGAAACTGCCTCATCTCAAGTCTACTTGTTGGCTTTGACCCTT--AAACTTTCGTAC
66 ACCTTGGAGACTTTCTTATCTCAAGTCTGCTTATCGGCTTTGA-CCTTGGAGACTTTCTTAC
* * * * * * * *
79993 CTTC-AGTCTGCCTTTCAGTTTTAACCCTAGAGA-TTGCCT-CATCTCAAGTCTATCTGTCAGCT
1 C-TCAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTACCT-TC-AGTCTACCTGTCAGCT
* * * * ** * * * ** * *
80055 TTGACATTGGAGACTTTTTTACCT-ATAATCTGCCCATCGGCTTTAACCCTAGAGACTGCCTCAT
63 TTGACCTTGGAGACTTTCTTATCTCA-AGTCTGCTTATCGGCTTTGACCTTGGAGACTTTCTTAC
* * * * * * *
80119 CTCAAGTCTGCCTATCGGCTTTGA-CTTGGAAGACTTTTTTACTTTCAGTCTGCCTGT-TGACTT
1 CTCAAGTCTGCCTGTCGGCTTTGACCCTAG-AGACTTTCTTACCTTCAGTCTACCTGTCAG-CTT
* * * ** * * * * * * * * *
80182 TGACATTGAAAACTACCTCATCTTAAGTCTACCTATCGACTTTGATCTTAGAGTCTTTTTTAC
64 TGACCTTGGAGACTTTCTTATCTCAAGTCTGCTTATCGGCTTTGACCTTGGAGACTTTCTTAC
** * * * * * * * **
80245 CTTTAGTCTGCCTGTCGACTGTGACCTTGGAGACTTTCTTACCTTCAGTTTGCTTGTTGGCTTTG
1 CTCAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTACCTTCAGTCTACCTGTCAGCTTTG
** * * * * * * *
80310 ACCTTGGAGACTACCTCATCTCAAGTCTACCTGTCAGCTTTGACCCTAGAGACTTTCTTAC
66 ACCTTGGAGACTTTCTTATCTCAAGTCTGCTTATCGGCTTTGACCTTGGAGACTTTCTTAC
* * * * ** * * * * * *
80371 CTTCAA-TCT-CCTTATTGGTTTTGA-CCTGGAGACTACCTCATC-TCAAGTTTGCTTGTCAACT
1 C-TCAAGTCTGCC-TGTCGGCTTTGACCCTAGAGACTTTCTTACCTTC-AGTCTACCTGTCAGCT
* * * *
80432 TTGACCTTGGAGACTTTCTTACCTTCAA-TCTGCCTATCGGCTTTAACCTTAGAGACTTTCTTAG
63 TTGACCTTGGAGACTTTCTTATC-TCAAGTCTGCTTATCGGCTTTGACCTTGGAGACTTTCTTA-
80496 C
126 C
* * * * * * * * * * *
80497 TTCAA-TCTACCTGTTGACTTTGA-CCTTGAAGACTATCTCATC-TCAAGTCTGCCTAT-TGACT
1 CTCAAGTCTGCCTGTCGGCTTTGACCCTAG-AGACTTTCTTACCTTC-AGTCTACCTGTCAG-CT
* * * * * * * * * * * *
80558 TTAACCTTGGAGACCTTCTCACCTTC-AGTTTGCCTATCAGCTTTAACCCTAGAGA-TTGCCTCA
63 TTGACCTTGGAGACTTTCTTATC-TCAAGTCTGCTTATCGGCTTTGACCTTGGAGACTT-TCTTA
*
80621 T
126 C
* * * * * * * * * *
80622 CTCAAGCCTACTTGTCAGCTTTGATCTTGGAGACTTTTTTACCTTC-GTCTGCTTGTC-GACTTT
1 CTCAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTACCTTCAGTCTACCTGTCAG-CTTT
* ** * * *
80685 GACCCTAAAGA-TTGTCTTATCTTAAGTCTGCCTATCGACTTTGACCTTGGAGACTTTCTTAC
65 GACCTTGGAGACTT-TCTTATCTCAAGTCTGCTTATCGGCTTTGACCTTGGAGACTTTCTTAC
** * * * *
80747 CTCAAGTCTGCCTACCAGCTTTGACCCTGGAGACTTTCTTATCTTCAGTCTACCTATCAGCTTTG
1 CTCAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTACCTTCAGTCTACCTGTCAGCTTTG
* * * * * * ** * *
80812 ACCTTGGAGACTTTCTTACCTTCAA-TCTACTTGTTGGCTTTGACCCTGAAGACTGCCTCAT
66 ACCTTGGAGACTTTCTTATC-TCAAGTCTGCTTATCGGCTTTGACCTTGGAGACTTTCTTAC
* * * * * * *
80873 CTCAAGTCTGCCTATAGACTTTAACCCTGGAGACTTTCTTACCTTCAGTCTGCCTATCAGCTTTG
1 CTCAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTACCTTCAGTCTACCTGTCAGCTTTG
* * * ** * *
80938 ACCTTGGAGA-TTGCCTCATCTCAAGTTTGCTTATCATCTTTGATCTTGGAGACTTTTTTAC
66 ACCTTGGAGACTT-TCTTATCTCAAGTCTGCTTATCGGCTTTGACCTTGGAGACTTTCTTAC
** * * * * * * * *
80999 CTTTAGTTTGCTTGTCGGCTTTGACCATAAAGA-TTGTCTTATCTTAAGTCTACCTATCGGCTTT
1 CTCAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTT-TCTTACCTTCAGTCTACCTGTCAGCTTT
* * *
81063 GACCTTGGAGACTTTCTTA-CTTCAAGTCTGCCTATCAGCTTTGACCTTGGAGACTATCTTAC
65 GACCTTGGAGACTTTCTTATC-TCAAGTCTGCTTATCGGCTTTGACCTTGGAGACTTTCTTAC
* * ** * *
81125 TTTC-AGTCTGCTTGTCAACTTTGA-CCTAGAGACTTTCTTACCTTTAGTCTGCCTGTCAGCTTT
1 -CTCAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTACCTTCAGTCTACCTGTCAGCTTT
* * * *
81188 GACCTTGGGGACTTTCTTACCTTC-AGTCTGCTTGTCAGCTTTGACCTTGGAGACTTT-TTAAC
65 GACCTTGGAGACTTTCTTATC-TCAAGTCTGCTTATCGGCTTTGACCTTGGAGACTTTCTT-AC
** * * * * * *
81250 CTTTAGTCT-ACTGTCGGCTTTGACCCTAGAGACTATCTCATC-TCAAGTCTACTTGTCAACTTT
1 CTCAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTACCTTC-AGTCTACCTGTCAGCTTT
* * * * * * * * ** * *
81313 GACCCTAGAGACTTTCTTACTTTC-AGTCTGCTTGTTGGCTTTAACCCTAGAGACTGCCTCAT
65 GACCTTGGAGACTTTCTTA-TCTCAAGTCTGCTTATCGGCTTTGACCTTGGAGACTTTCTTAC
* * * *
81375 CTCAAGTCTGCCTGTCAGCTTTGATCCTAGAGACTTTCTTACCTTCAGTTTACCTGTCGGCTTTG
1 CTCAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTACCTTCAGTCTACCTGTCAGCTTTG
* * * * *
81440 ACCTTGGAGA-TTGCCTCATCTCAAATATGCTTATCGGTTTTGACCTTGGAGACTTTCTTAC
66 ACCTTGGAGACTT-TCTTATCTCAAGTCTGCTTATCGGCTTTGACCTTGGAGACTTTCTTAC
* * * * * * *
81501 CTCAAGTCTGCCTGTCGGTTTTAACCTTGGAGACTTTCTTACCTTCAGTCTACTTGTCAACATTG
1 CTCAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTACCTTCAGTCTACCTGTCAGCTTTG
*
81566 ACCATGGAGA
66 ACCTTGGAGA
81576 TTGCCTGTCT
Statistics
Matches: 1298, Mismatches: 354, Indels: 112
0.74 0.20 0.06
Matches are distributed among these distances:
123 2 0.00
124 26 0.02
125 453 0.35
126 781 0.60
127 34 0.03
128 2 0.00
ACGTcount: A:0.20, C:0.26, G:0.16, T:0.38
Consensus pattern (126 bp):
CTCAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTACCTTCAGTCTACCTGTCAGCTTTG
ACCTTGGAGACTTTCTTATCTCAAGTCTGCTTATCGGCTTTGACCTTGGAGACTTTCTTAC
Found at i:81719 original size:42 final size:41
Alignment explanation
Indices: 81643--81752 Score: 112
Period size: 41 Copynumber: 2.6 Consensus size: 41
81633 CTTTGACCTT
* * * **
81643 AGAGACTTTCTTACCCTTAAGTTTGCTTATTGGCTTCGACTGT
1 AGAGACTTTTTTA-CCTTTAGTTTGCCTATTGGCTTCGAC-CA
* * *
81686 GGAGACTTTTTTACCTTTAGTTTGCCTGTTGGCTTTGACCA
1 AGAGACTTTTTTACCTTTAGTTTGCCTATTGGCTTCGACCA
* *
81727 AGAGACTTTTTTTCCTTTTGTTTGCC
1 AGAGACTTTTTTACCTTTAGTTTGCC
81753 CGTCGGTGTT
Statistics
Matches: 56, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
41 23 0.41
42 22 0.39
43 11 0.20
ACGTcount: A:0.15, C:0.20, G:0.19, T:0.45
Consensus pattern (41 bp):
AGAGACTTTTTTACCTTTAGTTTGCCTATTGGCTTCGACCA
Found at i:81765 original size:41 final size:41
Alignment explanation
Indices: 81687--81766 Score: 108
Period size: 41 Copynumber: 2.0 Consensus size: 41
81677 TTCGACTGTG
* *
81687 GAGACTTTTTTACCTTTAGTTTGCCTGTTGGCTTTGACCAA
1 GAGACTTTTTTACCTTTAGTTTGCCCGTCGGCTTTGACCAA
* *
81728 GAGACTTTTTTTCCTTTTGTTTGCCCGTCGG-TGTTGACC
1 GAGACTTTTTTACCTTTAGTTTGCCCGTCGGCT-TTGACC
81767 CGAGACACTC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 1 0.03
41 33 0.97
ACGTcount: A:0.12, C:0.21, G:0.21, T:0.45
Consensus pattern (41 bp):
GAGACTTTTTTACCTTTAGTTTGCCCGTCGGCTTTGACCAA
Found at i:82333 original size:20 final size:18
Alignment explanation
Indices: 82296--82335 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 18
82286 GAGTTATTTT
*
82296 AAAAAAAAAAGAATAATA
1 AAAAAAAAAAGAAAAATA
82314 AAAAAATAAAAGTAAAAATA
1 AAAAAA-AAAAG-AAAAATA
82334 AA
1 AA
82336 TAATTAAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 6 0.32
19 5 0.26
20 8 0.42
ACGTcount: A:0.82, C:0.00, G:0.05, T:0.12
Consensus pattern (18 bp):
AAAAAAAAAAGAAAAATA
Found at i:83095 original size:25 final size:25
Alignment explanation
Indices: 83050--83107 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 25
83040 AAAAGAAGAG
*
83050 GAAAAAAAACAGAAAGCAATCGAAA
1 GAAAAAAAACAGAAAGCAATCAAAA
* *
83075 GAAAAAAAAGAGGGAAG-AATCAAAA
1 GAAAAAAAACA-GAAAGCAATCAAAA
*
83100 GCAAAAAA
1 GAAAAAAA
83108 GACAAAACAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 24 0.86
26 4 0.14
ACGTcount: A:0.69, C:0.09, G:0.19, T:0.03
Consensus pattern (25 bp):
GAAAAAAAACAGAAAGCAATCAAAA
Found at i:83672 original size:11 final size:12
Alignment explanation
Indices: 83628--83674 Score: 51
Period size: 11 Copynumber: 3.9 Consensus size: 12
83618 GCAACCGAAG
*
83628 CAAAATAACAAGC
1 CAAAATAGCAA-C
*
83641 AAAAATAGCAAC
1 CAAAATAGCAAC
*
83653 CAAACTAGCAA-
1 CAAAATAGCAAC
83664 CAAAATAGCAA
1 CAAAATAGCAA
83675 AAGTAGACAC
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
11 10 0.34
12 10 0.34
13 9 0.31
ACGTcount: A:0.62, C:0.21, G:0.09, T:0.09
Consensus pattern (12 bp):
CAAAATAGCAAC
Found at i:93043 original size:22 final size:22
Alignment explanation
Indices: 93018--93059 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
93008 TGAAAATGAC
* *
93018 TTTTCACCTTTTTTAAATTTGG
1 TTTTCAACTTGTTTAAATTTGG
*
93040 TTTTGAACTTGTTTAAATTT
1 TTTTCAACTTGTTTAAATTT
93060 AATTACGACC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.21, C:0.10, G:0.10, T:0.60
Consensus pattern (22 bp):
TTTTCAACTTGTTTAAATTTGG
Found at i:93280 original size:51 final size:52
Alignment explanation
Indices: 93196--93303 Score: 137
Period size: 51 Copynumber: 2.1 Consensus size: 52
93186 CTGCATGTAT
*
93196 CGATACATTTGGGTCAAAAACCCAAAATGTATCGATACAATGAAAAACGTAC
1 CGATACATTTGGGTCAAAAACCCAAAATGTATCGATACAATAAAAAACGTAC
* ** * * * *
93248 CGATACATTTGGGT-TAAAACTTAGAATGTATCGATACGATAAAAAATGTAT
1 CGATACATTTGGGTCAAAAACCCAAAATGTATCGATACAATAAAAAACGTAC
93299 CGATA
1 CGATA
93304 TAATGAAAAA
Statistics
Matches: 48, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
51 34 0.71
52 14 0.29
ACGTcount: A:0.43, C:0.15, G:0.17, T:0.26
Consensus pattern (52 bp):
CGATACATTTGGGTCAAAAACCCAAAATGTATCGATACAATAAAAAACGTAC
Found at i:93297 original size:20 final size:20
Alignment explanation
Indices: 93272--93325 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
93262 TAAAACTTAG
*
93272 AATGTATCGATACGATAAAA
1 AATGTATCGATACAATAAAA
* *
93292 AATGTATCGATATAATGAAA
1 AATGTATCGATACAATAAAA
93312 AATGTATCGATACA
1 AATGTATCGATACA
93326 TTTTCTTTCC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.48, C:0.09, G:0.15, T:0.28
Consensus pattern (20 bp):
AATGTATCGATACAATAAAA
Found at i:93408 original size:20 final size:20
Alignment explanation
Indices: 93385--93423 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
93375 CATTTCAAAC
93385 ATGTATCAATACATTCACTT
1 ATGTATCAATACATTCACTT
93405 ATGTATCAATACATTCACT
1 ATGTATCAATACATTCACT
93424 ATTTGTATCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.21, G:0.05, T:0.38
Consensus pattern (20 bp):
ATGTATCAATACATTCACTT
Found at i:97873 original size:52 final size:52
Alignment explanation
Indices: 97806--97923 Score: 209
Period size: 52 Copynumber: 2.3 Consensus size: 52
97796 AATTTATCTA
*
97806 CATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGCCTG
1 CATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCCTG
**
97858 CATGTATCGATACATTTTCTAATGTATCGATACATCTGGGCAAATTTGCCTG
1 CATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCCTG
97910 CATGTATCGATACA
1 CATGTATCGATACA
97924 AAGATCAGTG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 63 1.00
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.35
Consensus pattern (52 bp):
CATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCCTG
Found at i:97936 original size:52 final size:52
Alignment explanation
Indices: 97825--97943 Score: 186
Period size: 52 Copynumber: 2.3 Consensus size: 52
97815 ATACATTTAA
***
97825 TAGTGTATCGATACATCTGGGCAAATTTGCCTGCATGTATCGATACATTTTC
1 TAGTGTATCGATACATCTGGGCAAATTTGCCTGCATGTATCGATACAAGATC
*
97877 TAATGTATCGATACATCTGGGCAAATTTGCCTGCATGTATCGATACAAAGATC
1 TAGTGTATCGATACATCTGGGCAAATTTGCCTGCATGTATCGATAC-AAGATC
97930 -AGTGTATCGATACA
1 TAGTGTATCGATACA
97944 ATGTATCGAT
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
52 58 0.95
53 3 0.05
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.33
Consensus pattern (52 bp):
TAGTGTATCGATACATCTGGGCAAATTTGCCTGCATGTATCGATACAAGATC
Found at i:97950 original size:13 final size:13
Alignment explanation
Indices: 97932--97956 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
97922 CAAAGATCAG
97932 TGTATCGATACAA
1 TGTATCGATACAA
97945 TGTATCGATACA
1 TGTATCGATACA
97957 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:98041 original size:13 final size:13
Alignment explanation
Indices: 98023--98047 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
98013 AAAAAAAATA
98023 TGTATCGATACAT
1 TGTATCGATACAT
98036 TGTATCGATACA
1 TGTATCGATACA
98048 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:99086 original size:49 final size:49
Alignment explanation
Indices: 98926--99539 Score: 840
Period size: 49 Copynumber: 12.7 Consensus size: 49
98916 AAAAGGATGT
*
98926 CAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGC
* * *
98978 CGATATGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
99021 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
99070 CAATGTGGTGAGTCAAGGCCAGCTACATTGGACTTAAAGTTG-AGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
99118 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * * *
99167 CAATGTGCTGAGTCTAGGCCAGCTATATTGGACTTAAAGATGATGATGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * *
99216 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAATGGTGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
99265 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
99314 CAATATGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
99357 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * *
99406 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
99455 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * *
99504 CAATATGCTGATTCAGGGCCAGCTATATTGGGCTTA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
99540 GAAGGGTTGC
Statistics
Matches: 496, Mismatches: 53, Indels: 29
0.86 0.09 0.05
Matches are distributed among these distances:
43 79 0.16
45 1 0.00
47 2 0.00
48 46 0.09
49 337 0.68
52 31 0.06
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.26
Consensus pattern (49 bp):
CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
Found at i:99438 original size:190 final size:191
Alignment explanation
Indices: 98971--99544 Score: 858
Period size: 190 Copynumber: 3.0 Consensus size: 191
98961 AAAGATGGAA
* * *
98971 AAGGTGCCGATATGCTGATTCAAGGCCAGCTATATTGGAC-T-----TAAAGGTGCCAATGTGCT
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATAAAGGTGCCAATATGCT
* * *
99030 GATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATGTGGTGAGTCAAGGCCAGCTA
66 GATTCAAGGCCAGCTACATTGGACTTAATGGTGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTA
** * *
99095 CATTGGACTTAAAG-TTGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT
131 CATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT----A-
99159 G
191 G
* * * * *
99160 AAGGTGCCAATGTGCTGAGTCTAGGCCAGCTATATTGGACTTAAAGATGATGATGCCAATATGCT
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATAAAGGTGCCAATATGCT
*
99225 GATTCAAGGCCAGCGACATTGGACTTAATGGTGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTA
66 GATTCAAGGCCAGCTACATTGGACTTAATGGTGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTA
99290 CATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTA-
131 CATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAG
*
99350 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCT
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATAAAGGTGCCAATATGCT
*
99415 GATTCAAGGCCAGCTATATTGGACTTAATGGTGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTA
66 GATTCAAGGCCAGCTACATTGGACTTAATGGTGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTA
* * *
99480 CATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAGGGCCAGCTATATTGGGCTTAG
131 CATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAG
99541 AAGG
1 AAGG
99545 GTTGCCACCG
Statistics
Matches: 350, Mismatches: 27, Indels: 14
0.90 0.07 0.04
Matches are distributed among these distances:
189 36 0.10
190 180 0.51
191 4 0.01
192 1 0.00
195 89 0.25
196 40 0.11
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (191 bp):
AAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATAAAGGTGCCAATATGCT
GATTCAAGGCCAGCTACATTGGACTTAATGGTGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTA
CATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAG
Found at i:99583 original size:33 final size:34
Alignment explanation
Indices: 99539--99679 Score: 241
Period size: 34 Copynumber: 4.2 Consensus size: 34
99529 TATTGGGCTT
99539 AGAAGGG-TTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTTGCCACCGACTTGTGTGGGCTTTAG
* * *
99572 AGAATGG-TTGCCACCAACTTGTGTGGGCTTTGG
1 AGAAGGGTTTGCCACCGACTTGTGTGGGCTTTAG
99605 AGAAGGGTTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTTGCCACCGACTTGTGTGGGCTTTAG
99639 AGAAGGGTTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTTGCCACCGACTTGTGTGGGCTTTAG
99673 AGAAGGG
1 AGAAGGG
99680 AGAAAGATGC
Statistics
Matches: 101, Mismatches: 6, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
33 36 0.36
34 65 0.64
ACGTcount: A:0.19, C:0.17, G:0.36, T:0.28
Consensus pattern (34 bp):
AGAAGGGTTTGCCACCGACTTGTGTGGGCTTTAG
Found at i:99621 original size:67 final size:67
Alignment explanation
Indices: 99539--99679 Score: 239
Period size: 67 Copynumber: 2.1 Consensus size: 67
99529 TATTGGGCTT
*
99539 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAATGG-TTGCCACCAACTTGTGTGGGCTTT
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTTGCCACCAACTTGTGTGGGCTTT
*
99603 GG
66 AG
*
99605 AGAAGGGTTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTTGCCACCGACTTGTGTGGGCTT
1 AGAAGGG-TTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTTGCCACCAACTTGTGTGGGCTT
99670 TAG
65 TAG
99673 AGAAGGG
1 AGAAGGG
99680 AGAAAGATGC
Statistics
Matches: 70, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
66 7 0.10
67 32 0.46
68 31 0.44
ACGTcount: A:0.19, C:0.17, G:0.36, T:0.28
Consensus pattern (67 bp):
AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTTGCCACCAACTTGTGTGGGCTTT
AG
Found at i:100114 original size:63 final size:62
Alignment explanation
Indices: 99883--100779 Score: 846
Period size: 63 Copynumber: 14.0 Consensus size: 62
99873 TGAAAAGAGA
* * * * * *
99883 AAAAGAGTGCCACGGAGTTGTGGGCTTTAAACA-GAAAAAGGTGCCACGGAGTTGTGGAC-TT
1 AAAAGGGTGCCACGGAGTTGTGGAC-TTAAAGATGAAAAAAGTGCCACGGAATTGTGGGCTTT
99944 AAAAGGAACAAGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAAGTGCCACGGAATTGTGGG
1 AAAA-G-----GGTGCCACGGAGTTGTGGACTTAAAGATG-AAAAAAGTGCCACGGAATTGTGGG
100009 CTTT
59 CTTT
100013 AAAAGGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAATTGTGGGCTTT
1 AAAAGGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAATTGTGGGCTTT
100075 AAAAGGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAAGTGCCACGGAATTGTGGGCTTT
1 AAAAGGGTGCCACGGAGTTGTGGACTTAAAGATG-AAAAAAGTGCCACGGAATTGTGGGCTTT
* * * * *
100138 AAAAGGGTGCCACGGAGTTGTGGACTTAAA-AGGAACAAGGTGCCACGGAGTTGTGGACTTAAAG
1 AAAAGGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAATTGTGGGCTT----
100202 AT
62 -T
** * * ** * *
100204 GAAAAAAAGTGCCACGGAATTGTGGGCTT-----T-AAAAGGGTGCCACGGAGTTGTGGAC-TT
1 --AAAAGGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAATTGTGGGCTTT
100261 AAAAGGAACAAGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAAGTGCCACGGAATTGTGGG
1 AAAA-G-----GGTGCCACGGAGTTGTGGACTTAAAGATG-AAAAAAGTGCCACGGAATTGTGGG
100326 CTTT
59 CTTT
* * * *
100330 AAAAGGGTGCCACGGAGTTGTGGACTTAAA-AGGAACAAGGTGCCACGGAGTTGTGGGCTTT
1 AAAAGGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAATTGTGGGCTTT
*
100391 AAAGAAGGGAGAAAGATGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGAAATTGTG
1 -AA-AA--G-G---G-TGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAATTGTG
100456 GGCTTT
57 GGCTTT
100462 AAAAGGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAAGTGCCACGGAATTGTGGGCTTT
1 AAAAGGGTGCCACGGAGTTGTGGACTTAAAGATG-AAAAAAGTGCCACGGAATTGTGGGCTTT
* * * * *
100525 AAAAGGGTGCCACGGAGTTGTGGACTTAAA-AGGAACAAGGTGCCACGGAGTTGTGGACTTAAAG
1 AAAAGGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAATTGTGGGCTT----
100589 AT
62 -T
** * * ** * * *
100591 GAAAAAAAGTGCCACGGAATTGT-GTCTT-----T-AAAAGGGTGCCACAGAGTTGTGGAC-TT
1 --AAAAGGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAATTGTGGGCTTT
100647 AAAAGGAACAAGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAAGTGCCACGGAATTGTGGG
1 AAAA-G-----GGTGCCACGGAGTTGTGGACTTAAAGATG-AAAAAAGTGCCACGGAATTGTGGG
100712 CTTT
59 CTTT
* * * *
100716 AAAAGGGTGCCACGGAGTTGTGGACTTAAA-AGGAACAAGGTGCCACGGAGTTGTGGGCTTT
1 AAAAGGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAATTGTGGGCTTT
100777 AAA
1 AAA
100780 GAAAAAAATG
Statistics
Matches: 710, Mismatches: 62, Indels: 128
0.79 0.07 0.14
Matches are distributed among these distances:
54 4 0.01
55 4 0.01
56 1 0.00
57 1 0.00
60 14 0.02
61 127 0.18
62 123 0.17
63 220 0.31
65 1 0.00
66 12 0.02
67 24 0.03
68 107 0.15
69 21 0.03
70 25 0.04
71 26 0.04
ACGTcount: A:0.33, C:0.13, G:0.32, T:0.21
Consensus pattern (62 bp):
AAAAGGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAATTGTGGGCTTT
Found at i:100432 original size:387 final size:380
Alignment explanation
Indices: 99687--100782 Score: 1600
Period size: 387 Copynumber: 2.8 Consensus size: 380
99677 GGGAGAAAGA
* * *
99687 TGCCACGGAGTTGTGGACTTAAA-AGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAA
1 TGCCACGGAGTTGTGGACTTAAAGA-TGAAAAAAAGTGCCACGGAATTGTGGGCTTTAAAAG---
* * * *
99751 AAAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA
62 --GGTGCCACGGAGTTGTGGAC-TT-AAAA-GGAACAAG-GTGCCACGGAGTTGTGGAC-TTAAA
* * * * * * *
99816 CA-G-AAGAAGGTGCCACGGAGTTGTGGGCTTT-AAAGAGTGCCACGGAGTCGTGGGCTTTGAAA
120 GATGAAAAAAAGTGCCACGGAATTGTGGGCTTTAAAAGGGTGCCACGGAGTTGTGGAC-TT-AAA
* * * * * *
99878 AGAGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACA-G-AAAAAGGTGCCACGGAGTTGTGGA
183 AG-GAACAAG-GTGCCACGGAGTTGTGGAC-TTAAAGATGAAAAAAAGTGCCACGGAATTGTGGG
* * * *
99941 C-TTAAAAGGAACAAGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAAGTGCCACGGAATTG
245 CTTTAAAA-G-----GGTGCCACGGAGTTGTGGACTTAAA-A-GGAACAAGGTGCCACGGAGTTG
*
100005 TGGGCTTT-AA-AAGGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAATTGT
302 TGGGCTTTAAAGAAGGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGAAATTGT
100068 GGGCTTTAAAAGGG
367 GGGCTTTAAAAGGG
100082 TGCCACGGAGTTGTGGACTTAAAGATGAAAAAAAGTGCCACGGAATTGTGGGCTTTAAAAGGGTG
1 TGCCACGGAGTTGTGGACTTAAAGATGAAAAAAAGTGCCACGGAATTGTGGGCTTTAAAAGGGTG
100147 CCACGGAGTTGTGGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAA
66 CCACGGAGTTGTGGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAA
100212 GTGCCACGGAATTGTGGGCTTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGAACAAGGTGC
131 GTGCCACGGAATTGTGGGCTTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGAACAAGGTGC
100277 CACGGAGTTGTGGACTTAAAGATGAAAAAAAGTGCCACGGAATTGTGGGCTTTAAAAGGGTGCCA
196 CACGGAGTTGTGGACTTAAAGATGAAAAAAAGTGCCACGGAATTGTGGGCTTTAAAAGGGTGCCA
100342 CGGAGTTGTGGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGGCTTTAAAGAAGGGAGAAAGA
261 CGGAGTTGTGGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGGCTTTAAAGAA--G-G---G-
100407 TGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGAAATTGTGGGCTTTAAAAGGG
319 TGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGAAATTGTGGGCTTTAAAAGGG
100469 TGCCACGGAGTTGTGGACTTAAAGATGAAAAAAAGTGCCACGGAATTGTGGGCTTTAAAAGGGTG
1 TGCCACGGAGTTGTGGACTTAAAGATGAAAAAAAGTGCCACGGAATTGTGGGCTTTAAAAGGGTG
100534 CCACGGAGTTGTGGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAA
66 CCACGGAGTTGTGGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAA
* *
100599 GTGCCACGGAATTGT-GTCTTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGGAACAAGGTGC
131 GTGCCACGGAATTGTGGGCTTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGAACAAGGTGC
100663 CACGGAGTTGTGGACTTAAAGATGAAAAAAAGTGCCACGGAATTGTGGGCTTTAAAAGGGTGCCA
196 CACGGAGTTGTGGACTTAAAGATGAAAAAAAGTGCCACGGAATTGTGGGCTTTAAAAGGGTGCCA
100728 CGGAGTTGTGGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGGCTTTAAAGAA
261 CGGAGTTGTGGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGGCTTTAAAGAA
100783 AAAAATGCCA
Statistics
Matches: 658, Mismatches: 27, Indels: 41
0.91 0.04 0.06
Matches are distributed among these distances:
378 26 0.04
379 3 0.00
380 27 0.04
382 1 0.00
383 7 0.01
384 19 0.03
385 35 0.05
386 198 0.30
387 240 0.36
388 25 0.04
389 2 0.00
390 18 0.03
395 56 0.09
396 1 0.00
ACGTcount: A:0.33, C:0.13, G:0.33, T:0.21
Consensus pattern (380 bp):
TGCCACGGAGTTGTGGACTTAAAGATGAAAAAAAGTGCCACGGAATTGTGGGCTTTAAAAGGGTG
CCACGGAGTTGTGGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAA
GTGCCACGGAATTGTGGGCTTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGAACAAGGTGC
CACGGAGTTGTGGACTTAAAGATGAAAAAAAGTGCCACGGAATTGTGGGCTTTAAAAGGGTGCCA
CGGAGTTGTGGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGGCTTTAAAGAAGGGTGCCACG
GAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGAAATTGTGGGCTTTAAAAGGG
Found at i:100493 original size:291 final size:288
Alignment explanation
Indices: 100080--100710 Score: 997
Period size: 291 Copynumber: 2.2 Consensus size: 288
100070 GCTTTAAAAG
* *
100080 GGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAAGTGCCACGGAATTGTGGGCTT-----T-A
1 GGTGCCACGGAGTTGTGGACTTAAAGAAGAAAAAAAGTGCCACGGAATTGTGGACTTAAAGATGA
** * * *
100139 AAAGGGTGCCACGGAGTTGTGGAC-TTAAAAGGAACAAGGTGCCACGGAGTTGTGGACTTAAAGA
66 AAAAAGTGCCACGAAATTGTGGGCTTTAAAA-G-----GGTGCCACGGAGTTGTGGACTTAAAGA
100203 TGAAAAAAAGTGCCACGGAATTGTGGGCTTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGA
125 TGAAAAAAAGTGCCACGGAATTGTGGGCTTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGA
100268 ACAAGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAAGTGCCACGGAATTGTGGGCTTTAAA
190 ACAAGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAAGTGCCACGGAATTGT-GGCTTTAAA
*
100333 AGGGTGCCACGGAGTTGTGGACTTAAAAGGAACAA
254 AGGGTGCCACAGAGTTGTGGACTTAAAAGGAACAA
* ** * *
100368 GGTGCCACGGAGTTGTGGGCTTTAAAGAAGGGAGAAAGATGCCACGGAGTTGTGGACTTAAAGAT
1 GGTGCCACGGAGTTGTGGAC-TTAAAGAAGAAAAAAAG-TGCCACGGAATTGTGGACTTAAAGAT
100433 GAAAAAAGTGCCACGAAATTGTGGGCTTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAGATGAA
64 GAAAAAAGTGCCACGAAATTGTGGGCTTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAGATGAA
100498 AAAAAGTGCCACGGAATTGTGGGCTTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGAACAA
129 AAAAAGTGCCACGGAATTGTGGGCTTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGAACAA
*
100563 GGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAAGTGCCACGGAATTGTGTCTTTAAAAGGGT
194 GGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAAGTGCCACGGAATTGTGGCTTTAAAAGGGT
100628 GCCACAGAGTTGTGGACTTAAAAGGAACAA
259 GCCACAGAGTTGTGGACTTAAAAGGAACAA
*
100658 GGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAAGTGCCACGGAATTGTGG
1 GGTGCCACGGAGTTGTGGACTTAAAGAAGAAAAAAAGTGCCACGGAATTGTGG
100711 GCTTTAAAAG
Statistics
Matches: 314, Mismatches: 20, Indels: 18
0.89 0.06 0.05
Matches are distributed among these distances:
288 34 0.11
289 26 0.08
290 79 0.25
291 147 0.47
295 1 0.00
296 21 0.07
297 6 0.02
ACGTcount: A:0.33, C:0.13, G:0.32, T:0.21
Consensus pattern (288 bp):
GGTGCCACGGAGTTGTGGACTTAAAGAAGAAAAAAAGTGCCACGGAATTGTGGACTTAAAGATGA
AAAAAGTGCCACGAAATTGTGGGCTTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAGATGAAAA
AAAGTGCCACGGAATTGTGGGCTTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGAACAAGG
TGCCACGGAGTTGTGGACTTAAAGATGAAAAAAAGTGCCACGGAATTGTGGCTTTAAAAGGGTGC
CACAGAGTTGTGGACTTAAAAGGAACAA
Found at i:100842 original size:96 final size:96
Alignment explanation
Indices: 100080--100793 Score: 1133
Period size: 96 Copynumber: 7.4 Consensus size: 96
100070 GCTTTAAAAG
100080 GGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAAGTGCCACGGAATTGTGGGCTTTAAAAGGG
1 GGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAAGTGCCACGGAATTGTGGGCTTTAAAAGGG
100145 TGCCACGGAGTTGTGGACTTAAAAGGAACAA
66 TGCCACGGAGTTGTGGACTTAAAAGGAACAA
100176 GGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAAGTGCCACGGAATTGTGGGCTTTAAAAGGG
1 GGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAAGTGCCACGGAATTGTGGGCTTTAAAAGGG
100241 TGCCACGGAGTTGTGGACTTAAAAGGAACAA
66 TGCCACGGAGTTGTGGACTTAAAAGGAACAA
100272 GGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAAGTGCCACGGAATTGTGGGCTTTAAAAGGG
1 GGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAAGTGCCACGGAATTGTGGGCTTTAAAAGGG
100337 TGCCACGGAGTTGTGGACTTAAAAGGAACAA
66 TGCCACGGAGTTGTGGACTTAAAAGGAACAA
* * ** * * *
100368 GGTGCCACGGAGTTGTGGGCTTTAAAGAAGGGAGAAAGATGCCACGGAGTTGTGGACTTAAAGAT
1 GGTGCCACGGAGTTGTGGAC-TTAAAGATGAAAAAAAG-TGCCACGGAATTGTGGGCTT-----T
** * * *
100433 GAAAAAAGTGCCACGAAATTGTGGGCTTTAAAA-G-----
59 -AAAAGGGTGCCACGGAGTTGTGGAC-TTAAAAGGAACAA
100467 GGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAAGTGCCACGGAATTGTGGGCTTTAAAAGGG
1 GGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAAGTGCCACGGAATTGTGGGCTTTAAAAGGG
100532 TGCCACGGAGTTGTGGACTTAAAAGGAACAA
66 TGCCACGGAGTTGTGGACTTAAAAGGAACAA
*
100563 GGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAAGTGCCACGGAATTGT-GTCTTTAAAAGGG
1 GGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAAGTGCCACGGAATTGTGGGCTTTAAAAGGG
*
100627 TGCCACAGAGTTGTGGACTTAAAAGGAACAA
66 TGCCACGGAGTTGTGGACTTAAAAGGAACAA
100658 GGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAAGTGCCACGGAATTGTGGGCTTTAAAAGGG
1 GGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAAGTGCCACGGAATTGTGGGCTTTAAAAGGG
100723 TGCCACGGAGTTGTGGACTTAAAAGGAACAA
66 TGCCACGGAGTTGTGGACTTAAAAGGAACAA
* *
100754 GGTGCCACGGAGTTGTGGGCTTTAA-A-GAAAAAAA-TGCCAC
1 GGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAAGTGCCAC
100794 TGAGTCGTGG
Statistics
Matches: 572, Mismatches: 30, Indels: 35
0.90 0.05 0.05
Matches are distributed among these distances:
90 6 0.01
91 21 0.04
92 1 0.00
93 6 0.01
94 8 0.01
95 94 0.16
96 327 0.57
97 31 0.05
98 31 0.05
99 19 0.03
103 1 0.00
104 21 0.04
105 6 0.01
ACGTcount: A:0.33, C:0.14, G:0.32, T:0.21
Consensus pattern (96 bp):
GGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAAGTGCCACGGAATTGTGGGCTTTAAAAGGG
TGCCACGGAGTTGTGGACTTAAAAGGAACAA
Found at i:101797 original size:18 final size:17
Alignment explanation
Indices: 101774--101810 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
101764 GTGAAAAGGG
101774 GTTTTTCCTTTTTTTTTT
1 GTTTTT-CTTTTTTTTTT
*
101792 GTTTTTTTTTTTTTTTT
1 GTTTTTCTTTTTTTTTT
101809 GT
1 GT
101811 GAAGAGTAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.00, C:0.05, G:0.08, T:0.86
Consensus pattern (17 bp):
GTTTTTCTTTTTTTTTT
Found at i:109104 original size:52 final size:52
Alignment explanation
Indices: 109034--109154 Score: 215
Period size: 52 Copynumber: 2.3 Consensus size: 52
109024 GAAAATTTAT
*
109034 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
**
109086 CTGCATGTATCGATACATTTTCTAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
109138 CTGCATGTATCGATACA
1 CTGCATGTATCGATACA
109155 AAGATCAGTG
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 66 1.00
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
Found at i:109167 original size:52 final size:51
Alignment explanation
Indices: 109034--109174 Score: 194
Period size: 52 Copynumber: 2.7 Consensus size: 51
109024 GAAAATTTAT
*
109034 CTGCATGTATCGATACATTTAAT-AGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA--AAATCAGTGTATCGATACATCTGGGCAAATTTGC
*** *
109086 CTGCATGTATCGATACATTTTCTAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACAAAATC-AGTGTATCGATACATCTGGGCAAATTTGC
109138 CTGCATGTATCGATACAAAGATCAGTGTATCGATACA
1 CTGCATGTATCGATACAAA-ATCAGTGTATCGATACA
109175 ATGTATCGAT
Statistics
Matches: 79, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
50 2 0.03
52 75 0.95
53 2 0.03
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33
Consensus pattern (51 bp):
CTGCATGTATCGATACAAAATCAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:109181 original size:13 final size:13
Alignment explanation
Indices: 109163--109187 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
109153 CAAAGATCAG
109163 TGTATCGATACAA
1 TGTATCGATACAA
109176 TGTATCGATACA
1 TGTATCGATACA
109188 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:109272 original size:13 final size:13
Alignment explanation
Indices: 109254--109278 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
109244 AAAAAAAATA
109254 TGTATCGATACAT
1 TGTATCGATACAT
109267 TGTATCGATACA
1 TGTATCGATACA
109279 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:110316 original size:49 final size:49
Alignment explanation
Indices: 110156--110769 Score: 858
Period size: 49 Copynumber: 12.7 Consensus size: 49
110146 AAAAAGATGT
*
110156 CAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGC
* * *
110208 CGATATGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
110251 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
110300 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGTTG-AGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
110348 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
110397 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGATGATGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * *
110446 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAATGGTGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
110495 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
110544 CAATATGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
110587 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * *
110636 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
110685 CAATGTGCTGAGTCAAGGACAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * *
110734 CAATATGCTGATTCAGGGCCAGCTATATTGGGCTTA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
110770 GAAGGGTTGC
Statistics
Matches: 500, Mismatches: 49, Indels: 29
0.87 0.08 0.05
Matches are distributed among these distances:
43 79 0.16
45 1 0.00
47 2 0.00
48 47 0.09
49 340 0.68
52 31 0.06
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.25
Consensus pattern (49 bp):
CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
Found at i:110668 original size:190 final size:191
Alignment explanation
Indices: 110201--110774 Score: 867
Period size: 190 Copynumber: 3.0 Consensus size: 191
110191 AAAGATGGAA
* * * *
110201 AAGGTGCCGATATGCTGATTCAAGGCCAGCTATATTGGAC-T-----TAAAGGTGCCAATGTGCT
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCT
* *
110260 GATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTA
66 GATTCAAGGCCAGCTACATTGGACTTAATGGTGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTA
** * *
110325 CATTGGACTTAAAG-TTGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT
131 CATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT----A-
110389 G
191 G
* * * *
110390 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGATGATGCCAATATGCT
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCT
*
110455 GATTCAAGGCCAGCGACATTGGACTTAATGGTGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTA
66 GATTCAAGGCCAGCTACATTGGACTTAATGGTGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTA
110520 CATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTA-
131 CATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAG
110580 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCT
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCT
* *
110645 GATTCAAGGCCAGCTATATTGGACTTAATGGTGAAGGTGCCAATGTGCTGAGTCAAGGACAGCTA
66 GATTCAAGGCCAGCTACATTGGACTTAATGGTGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTA
* * *
110710 CATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAGGGCCAGCTATATTGGGCTTAG
131 CATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAG
110771 AAGG
1 AAGG
110775 GTTGCCACCG
Statistics
Matches: 352, Mismatches: 25, Indels: 14
0.90 0.06 0.04
Matches are distributed among these distances:
189 36 0.10
190 181 0.51
191 4 0.01
192 1 0.00
195 90 0.26
196 40 0.11
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (191 bp):
AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCT
GATTCAAGGCCAGCTACATTGGACTTAATGGTGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTA
CATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAG
Found at i:110813 original size:33 final size:34
Alignment explanation
Indices: 110769--110909 Score: 241
Period size: 34 Copynumber: 4.2 Consensus size: 34
110759 TATTGGGCTT
110769 AGAAGGG-TTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTTGCCACCGACTTGTGTGGGCTTTAG
* * *
110802 AGAATGG-TTGCCACCAACTTGTGTGGGCTTTGG
1 AGAAGGGTTTGCCACCGACTTGTGTGGGCTTTAG
110835 AGAAGGGTTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTTGCCACCGACTTGTGTGGGCTTTAG
110869 AGAAGGGTTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTTGCCACCGACTTGTGTGGGCTTTAG
110903 AGAAGGG
1 AGAAGGG
110910 AGAAAGATGC
Statistics
Matches: 101, Mismatches: 6, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
33 36 0.36
34 65 0.64
ACGTcount: A:0.19, C:0.17, G:0.36, T:0.28
Consensus pattern (34 bp):
AGAAGGGTTTGCCACCGACTTGTGTGGGCTTTAG
Found at i:110851 original size:67 final size:67
Alignment explanation
Indices: 110769--110909 Score: 239
Period size: 67 Copynumber: 2.1 Consensus size: 67
110759 TATTGGGCTT
*
110769 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAATGG-TTGCCACCAACTTGTGTGGGCTTT
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTTGCCACCAACTTGTGTGGGCTTT
*
110833 GG
66 AG
*
110835 AGAAGGGTTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTTGCCACCGACTTGTGTGGGCTT
1 AGAAGGG-TTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTTGCCACCAACTTGTGTGGGCTT
110900 TAG
65 TAG
110903 AGAAGGG
1 AGAAGGG
110910 AGAAAGATGC
Statistics
Matches: 70, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
66 7 0.10
67 32 0.46
68 31 0.44
ACGTcount: A:0.19, C:0.17, G:0.36, T:0.28
Consensus pattern (67 bp):
AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTTGCCACCAACTTGTGTGGGCTTT
AG
Found at i:111103 original size:131 final size:129
Alignment explanation
Indices: 110946--111211 Score: 380
Period size: 131 Copynumber: 2.0 Consensus size: 129
110936 TAAAAGGGAA
*
110946 AAAGAGTGCCACGGAGTTGTGGGCTTT-AAA-AGAAAAA-AGTGCCACAGAGTTGTGGGCTTTGA
1 AAAGAGTGCCACGGAGTCGTGGGCTTTAAAAGAGAAAAAGAGTGCCACAGAGTTGTGGGCTTT-A
* *
111008 AA-AGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACA-GAAGAAGGTGCCACGGAGTTGTG
65 AACA--GAAAAAG-GTGCCACGGAGTTGTGGAC-TTAAA-AGGAACAAGGTGCCACGGAGTTGTG
*
111071 GGCTTT
125 GAC-TT
*
111077 AAAGAGTGCCACGGAGTCGTGGGCTTTGAAAAGAGAAAAAGAGTGCCACGGAGTTGTGGGCTTTA
1 AAAGAGTGCCACGGAGTCGTGGGCTTT-AAAAGAGAAAAAGAGTGCCACAGAGTTGTGGGCTTTA
111142 AACAGAAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGACTT
65 AACAGAAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGACTT
111207 AAAGA
1 AAAGA
111212 TGAAAAAAAG
Statistics
Matches: 124, Mismatches: 5, Indels: 13
0.87 0.04 0.09
Matches are distributed among these distances:
130 8 0.06
131 55 0.44
132 18 0.15
133 10 0.08
134 10 0.08
135 23 0.19
ACGTcount: A:0.33, C:0.14, G:0.34, T:0.20
Consensus pattern (129 bp):
AAAGAGTGCCACGGAGTCGTGGGCTTTAAAAGAGAAAAAGAGTGCCACAGAGTTGTGGGCTTTAA
ACAGAAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGACTT
Found at i:111118 original size:98 final size:98
Alignment explanation
Indices: 110891--111464 Score: 465
Period size: 98 Copynumber: 5.8 Consensus size: 98
110881 CACCGACTTG
* * * * **
110891 TGTGGGCTTTAGAGAAGGGAGAAAGA-TGCCACGGAGTTGTGGACTTAAAAGGGAAAAAGAGTGC
1 TGTGGGCTTTA-A-AAGAGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACAGAAAAAG-GTGC
* *
110955 CACGGAGTTGTGGGCTTTAAAAGAAAAAAGTGCCACAGAGT
63 CACGGAGTTGTGGACTTTAAAAG-----AGTGCCACGGAGT
* *
110996 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACAGAAGAAGGTGCCA
1 TGTGGGCTTT-AAAAGAGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACAGAAAAAGGTGCCA
*
111061 CGGAGTTGTGGGCTTT-AAAGAGTGCCACGGAGT
65 CGGAGTTGTGGACTTTAAAAGAGTGCCACGGAGT
*
111094 CGTGGGCTTTGAAAAGAGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACAGAAAAAGGTGCCA
1 TGTGGGCTTT-AAAAGAGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACAGAAAAAGGTGCCA
111159 CGGAGTTGTGGAC-TTAAAAGGAACAAGGTGCCACGGAGT
65 CGGAGTTGTGGACTTTAAAA-G----A-GTGCCACGGAGT
* * *
111198 TGTGGAC-TT-AAAGATGAAAAAAAGTGCCACGGAATTGTGGGCTTTAAA-AG-----GGTGCCA
1 TGTGGGCTTTAAAAGA-GAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACAGAAAAAGGTGCCA
* *
111255 CGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAAT
65 CGGAGTTGTGGACTT-----T-AAAAGAGTGCCACGGAGT
* * *
111295 TGTGGGCTTT-AAA-AG-----G-GTGCCACGGAGTTGTGGAC-TTAAAGATGAAAAAAAGTGCC
1 TGTGGGCTTTAAAAGAGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACA-G-AAAAAGGTGCC
* * * *
111351 ACGAAATTGTGGGCTTTAAAAGGGTGCCACGGAGT
64 ACGGAGTTGTGGACTTTAAAAGAGTGCCACGGAGT
* * * * * *
111386 TATGGAC-TTAAAAG-GAACAAG-GTGCCACGGAGTTGTGGGCTTTAAAGAAGGGAGAAAGATGC
1 TGTGGGCTTTAAAAGAGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA-CA--GAAAAAGGTGC
111448 CACGGAGTTGTGGACTT
63 CACGGAGTTGTGGACTT
111465 AAAGATGTGT
Statistics
Matches: 394, Mismatches: 39, Indels: 79
0.77 0.08 0.15
Matches are distributed among these distances:
89 5 0.01
90 20 0.05
91 25 0.06
92 1 0.00
96 40 0.10
97 44 0.11
98 117 0.30
99 2 0.01
101 7 0.02
102 32 0.08
103 11 0.03
104 50 0.13
105 39 0.10
106 1 0.00
ACGTcount: A:0.33, C:0.13, G:0.34, T:0.21
Consensus pattern (98 bp):
TGTGGGCTTTAAAAGAGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACAGAAAAAGGTGCCAC
GGAGTTGTGGACTTTAAAAGAGTGCCACGGAGT
Found at i:111353 original size:125 final size:125
Alignment explanation
Indices: 111113--111471 Score: 481
Period size: 125 Copynumber: 2.8 Consensus size: 125
111103 TGAAAAGAGA
* * *
111113 AAAAGAGTGCCACGGAGTTGTGGGCTTTAAACAGAAAAAGGTGCCACGGAGTTGTGGAC-TTAAA
1 AAAAGGGTGCCACGGAGTTGTGGAC-TTAAA-AGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAA
*
111177 AGGAACAAGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAAGTGCCACGGAATTGTGGGCTT
64 AGG----AGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAAGTGCCACGAAATTGTGGGCTT
111242 T
125 T
* *
111243 AAAAGGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAATTGTGGGCTTTAAA
1 AAAAGGGTGCCACGGAGTTGTGGACTTAAA-A-GAAAAAGGTGCCACGGAGTTGTGGGCTTTAAA
111308 A-G-GGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAAGTGCCACGAAATTGTGGGCTTT
64 AGGAGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAAGTGCCACGAAATTGTGGGCTTT
* *
111368 AAAAGGGTGCCACGGAGTTATGGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGGCTTTAAAG
1 AAAAGGGTGCCACGGAGTTGTGGACTTAAAA-GAAAAAGGTGCCACGGAGTTGTGGGCTTT-AA-
111433 AAGGGAGAAAGATGCCACGGAGTTGTGGACTTAAAGATG
63 AA-GGAG---G-TGCCACGGAGTTGTGGACTTAAAGATG
111472 TGTCGATATT
Statistics
Matches: 206, Mismatches: 12, Indels: 19
0.87 0.05 0.08
Matches are distributed among these distances:
124 27 0.13
125 88 0.43
126 2 0.01
128 1 0.00
129 7 0.03
130 47 0.23
131 6 0.03
132 1 0.00
133 27 0.13
ACGTcount: A:0.34, C:0.13, G:0.32, T:0.21
Consensus pattern (125 bp):
AAAAGGGTGCCACGGAGTTGTGGACTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAG
GAGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAAGTGCCACGAAATTGTGGGCTTT
Found at i:111437 original size:63 final size:65
Alignment explanation
Indices: 110917--111469 Score: 455
Period size: 63 Copynumber: 8.4 Consensus size: 65
110907 GGGAGAAAGA
110917 TGCCACGGAGTTGTGGACTTAAA-AGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAA
1 TGCCACGGAGTTGTGGACTTAAAGAGGGAAAAAG-GTGCCACGGAGTTGTGGGCTTT-AAAG--A
**
110981 AAAG
62 AGGG
* *
110985 TGCCACAGAGTTGTGGGCTTTGAAA-AGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACAG
1 TGCCACGGAGTTGTGGAC-TT-AAAGAGGGAAAAAG-GTGCCACGGAGTTGTGGGCTTT-AA-AG
111049 AAGAAGG
61 AAG--GG
* * *
111056 TGCCACGGAGTTGTGGGCTTTAA-A--G----A-GTGCCACGGAGTCGTGGGCTTTGAAAAGAGA
1 TGCCACGGAGTTGTGGACTTAAAGAGGGAAAAAGGTGCCACGGAGTTGTGGGCTTT---AA-AG-
*
111113 AAAAGAG
61 --AAGGG
* * * *
111120 TGCCACGGAGTTGTGGGCTTTAAACA--GAAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGAAC
1 TGCCACGGAGTTGTGGAC-TTAAAGAGGGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAA-G-A-
*
111183 AAGG
62 AGGG
* * * *
111187 TGCCACGGAGTTGTGGACTTAAAGATGAAAAAAAGTGCCACGGAATTGTGGGCTTT-AA-AAGGG
1 TGCCACGGAGTTGTGGACTTAAAGAGGGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAGAAGGG
* * *
111250 TGCCACGGAGTTGTGGACTTAAAGA-TGAAAAAAGTGCCACGGAATTGTGGGCTTT-AA-AAGGG
1 TGCCACGGAGTTGTGGACTTAAAGAGGGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAGAAGGG
* * * * *
111312 TGCCACGGAGTTGTGGACTTAAAGATGAAAAAAAGTGCCACGAAATTGTGGGCTTT-AA-AAGGG
1 TGCCACGGAGTTGTGGACTTAAAGAGGGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAGAAGGG
* *
111375 TGCCACGGAGTTATGGACTTAAA-A-GGAACAAGGTGCCACGGAGTTGTGGGCTTTAAAGAAGGG
1 TGCCACGGAGTTGTGGACTTAAAGAGGGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAGAA--G
111438 AGAAAG
64 -G---G
111444 ATGCCACGGAGTTGTGGACTTAAAGA
1 -TGCCACGGAGTTGTGGACTTAAAGA
111470 TGTGTCGATA
Statistics
Matches: 418, Mismatches: 35, Indels: 61
0.81 0.07 0.12
Matches are distributed among these distances:
61 46 0.11
62 63 0.15
63 92 0.22
64 20 0.05
65 5 0.01
66 14 0.03
67 23 0.06
68 43 0.10
69 8 0.02
70 64 0.15
71 40 0.10
ACGTcount: A:0.33, C:0.13, G:0.33, T:0.21
Consensus pattern (65 bp):
TGCCACGGAGTTGTGGACTTAAAGAGGGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAGAAGGG
Found at i:111687 original size:52 final size:52
Alignment explanation
Indices: 111617--111737 Score: 215
Period size: 52 Copynumber: 2.3 Consensus size: 52
111607 GAAAATTTAT
*
111617 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
**
111669 CTGCATGTATCGATACATTTTCTAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
111721 CTGCATGTATCGATACA
1 CTGCATGTATCGATACA
111738 AAGATCAGTG
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 66 1.00
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
Found at i:111750 original size:52 final size:51
Alignment explanation
Indices: 111617--111757 Score: 194
Period size: 52 Copynumber: 2.7 Consensus size: 51
111607 GAAAATTTAT
*
111617 CTGCATGTATCGATACATTTAAT-AGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA--AAATCAGTGTATCGATACATCTGGGCAAATTTGC
*** *
111669 CTGCATGTATCGATACATTTTCTAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACAAAATC-AGTGTATCGATACATCTGGGCAAATTTGC
111721 CTGCATGTATCGATACAAAGATCAGTGTATCGATACA
1 CTGCATGTATCGATACAAA-ATCAGTGTATCGATACA
111758 ATGTATCGAT
Statistics
Matches: 79, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
50 2 0.03
52 75 0.95
53 2 0.03
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33
Consensus pattern (51 bp):
CTGCATGTATCGATACAAAATCAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:111764 original size:13 final size:12
Alignment explanation
Indices: 111746--111792 Score: 55
Period size: 13 Copynumber: 4.1 Consensus size: 12
111736 CAAAGATCAG
111746 TGTATCGATACAA
1 TGTATCGATAC-A
111759 TGTATCGATACA
1 TGTATCGATACA
*
111771 TGTA-AG-TA-A
1 TGTATCGATACA
111780 TGTATCGATACA
1 TGTATCGATACA
111792 T
1 T
111793 TTCTTTTTGG
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
9 5 0.17
10 3 0.10
11 3 0.10
12 7 0.24
13 11 0.38
ACGTcount: A:0.36, C:0.13, G:0.17, T:0.34
Consensus pattern (12 bp):
TGTATCGATACA
Found at i:111855 original size:13 final size:13
Alignment explanation
Indices: 111837--111861 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
111827 AAAAAAAATA
111837 TGTATCGATACAT
1 TGTATCGATACAT
111850 TGTATCGATACA
1 TGTATCGATACA
111862 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:112793 original size:19 final size:20
Alignment explanation
Indices: 112749--112801 Score: 81
Period size: 19 Copynumber: 2.7 Consensus size: 20
112739 CTATCAATTT
112749 CATGTATCGATACAATTGAG
1 CATGTATCGATACAATTGAG
**
112769 TTTGTATCGATACAA-TGAG
1 CATGTATCGATACAATTGAG
112788 CATGTATCGATACA
1 CATGTATCGATACA
112802 TTGTATCGAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
19 16 0.55
20 13 0.45
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.32
Consensus pattern (20 bp):
CATGTATCGATACAATTGAG
Found at i:112808 original size:13 final size:13
Alignment explanation
Indices: 112790--112814 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
112780 ACAATGAGCA
112790 TGTATCGATACAT
1 TGTATCGATACAT
112803 TGTATCGATACA
1 TGTATCGATACA
112815 AACATAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:112811 original size:32 final size:32
Alignment explanation
Indices: 112770--112834 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 32
112760 ACAATTGAGT
** *
112770 TTGTATCGATACAATGAGCATGTATCGATACA
1 TTGTATCGATACAAACAGAATGTATCGATACA
*
112802 TTGTATCGATACAAACATAATGTATCGATACA
1 TTGTATCGATACAAACAGAATGTATCGATACA
112834 T
1 T
112835 CTAGATGAGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.32
Consensus pattern (32 bp):
TTGTATCGATACAAACAGAATGTATCGATACA
Found at i:115475 original size:47 final size:47
Alignment explanation
Indices: 115406--115512 Score: 187
Period size: 47 Copynumber: 2.3 Consensus size: 47
115396 GTATTGATAC
* * *
115406 AATGTATCGATACTTAGAACATTGTATCGATACATCTGGGTTTTCCA
1 AATGTATCGATACTTAAAACATTATATCGATACATCTGGATTTTCCA
115453 AATGTATCGATACTTAAAACATTATATCGATACATCTGGATTTTCCA
1 AATGTATCGATACTTAAAACATTATATCGATACATCTGGATTTTCCA
115500 AATGTATCGATAC
1 AATGTATCGATAC
115513 ATTTTGGAAA
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 57 1.00
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.36
Consensus pattern (47 bp):
AATGTATCGATACTTAAAACATTATATCGATACATCTGGATTTTCCA
Found at i:119667 original size:21 final size:21
Alignment explanation
Indices: 119643--119696 Score: 108
Period size: 21 Copynumber: 2.6 Consensus size: 21
119633 ATTCTAATGC
119643 TAATTCTTCAAAAGCATCTTG
1 TAATTCTTCAAAAGCATCTTG
119664 TAATTCTTCAAAAGCATCTTG
1 TAATTCTTCAAAAGCATCTTG
119685 TAATTCTTCAAA
1 TAATTCTTCAAA
119697 GGTATAAGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.35, C:0.19, G:0.07, T:0.39
Consensus pattern (21 bp):
TAATTCTTCAAAAGCATCTTG
Found at i:121609 original size:13 final size:13
Alignment explanation
Indices: 121591--121615 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
121581 TACTATGAAC
121591 ATGTATCGATACA
1 ATGTATCGATACA
121604 ATGTATCGATAC
1 ATGTATCGATAC
121616 TAAGCAATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:122006 original size:13 final size:13
Alignment explanation
Indices: 121988--122013 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
121978 ACATTATGCT
121988 TTGTATCGATACA
1 TTGTATCGATACA
122001 TTGTATCGATACA
1 TTGTATCGATACA
122014 CGTTCATTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:122100 original size:33 final size:33
Alignment explanation
Indices: 122063--122131 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
122053 CTACCACTAT
* *
122063 TTGTATCGATACATGGT-ACATTATATCGATACA
1 TTGTATCAATACATGATGA-ATTATATCGATACA
122096 TTGTATCAATACATGATGAATTATATCGATACA
1 TTGTATCAATACATGATGAATTATATCGATACA
122129 TTG
1 TTG
122132 CTTGTAACGA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
33 32 0.97
34 1 0.03
ACGTcount: A:0.35, C:0.13, G:0.14, T:0.38
Consensus pattern (33 bp):
TTGTATCAATACATGATGAATTATATCGATACA
Found at i:130214 original size:22 final size:21
Alignment explanation
Indices: 130189--130229 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
130179 TTTTTTAAGA
*
130189 TTTGACAAAGGGGGAGAAATGC
1 TTTGACAAA-AGGGAGAAATGC
*
130211 TTTGATAAAAGGGAGAAAT
1 TTTGACAAAAGGGAGAAAT
130230 ATGTTTATCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.41, C:0.05, G:0.32, T:0.22
Consensus pattern (21 bp):
TTTGACAAAAGGGAGAAATGC
Found at i:130943 original size:20 final size:20
Alignment explanation
Indices: 130918--130971 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
130908 CTACCACTGT
* *
130918 TTGTATCAATACATGGT-ACA
1 TTGTATCGATACATGATGA-A
130938 TTGTATCGATACATGATGAA
1 TTGTATCGATACATGATGAA
130958 TTGTATCGATACAT
1 TTGTATCGATACAT
130972 TGCTTGTAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 30 0.97
21 1 0.03
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (20 bp):
TTGTATCGATACATGATGAA
Found at i:132090 original size:20 final size:20
Alignment explanation
Indices: 132067--132120 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 20
132057 CATTTTAGGC
*
132067 ATGTATCAATGCATTTACTG
1 ATGTATCAATACATTTACTG
*
132087 ATGTATCGATACATTTACT-
1 ATGTATCAATACATTTACTG
132106 ATTTGTATCAATACA
1 A--TGTATCAATACA
132121 AATTGTAGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
19 1 0.03
20 17 0.59
21 11 0.38
ACGTcount: A:0.33, C:0.15, G:0.11, T:0.41
Consensus pattern (20 bp):
ATGTATCAATACATTTACTG
Found at i:134406 original size:13 final size:13
Alignment explanation
Indices: 134388--134421 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
134378 ACATTTCTTC
134388 ATGTATCAATACA
1 ATGTATCAATACA
*
134401 ATGTATCGATACA
1 ATGTATCAATACA
*
134414 TTGTATCA
1 ATGTATCA
134422 TGTATCCATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (13 bp):
ATGTATCAATACA
Found at i:134406 original size:33 final size:33
Alignment explanation
Indices: 134368--134434 Score: 100
Period size: 33 Copynumber: 2.0 Consensus size: 33
134358 GTTACAAGCT
*
134368 ATGTATCGATACATT-TCTTCATGTATCAATACA
1 ATGTATCGATACATTGT-ATCATGTATCAATACA
*
134401 ATGTATCGATACATTGTATCATGTATCCATACA
1 ATGTATCGATACATTGTATCATGTATCAATACA
134434 A
1 A
134435 ATAGTGATAG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
33 30 0.97
34 1 0.03
ACGTcount: A:0.34, C:0.18, G:0.10, T:0.37
Consensus pattern (33 bp):
ATGTATCGATACATTGTATCATGTATCAATACA
Found at i:134528 original size:20 final size:19
Alignment explanation
Indices: 134484--134536 Score: 79
Period size: 19 Copynumber: 2.7 Consensus size: 19
134474 ACAAATTGTC
*
134484 CATGTATCGATACAATGAA
1 CATGTATCGATACAAAGAA
*
134503 CATGTATCGATACAAAGCAG
1 CATGTATCGATACAAAG-AA
134523 CATGTATCGATACA
1 CATGTATCGATACA
134537 TCTGAGCGTG
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 16 0.52
20 15 0.48
ACGTcount: A:0.40, C:0.19, G:0.17, T:0.25
Consensus pattern (19 bp):
CATGTATCGATACAAAGAA
Found at i:134557 original size:20 final size:19
Alignment explanation
Indices: 134484--134556 Score: 92
Period size: 20 Copynumber: 3.7 Consensus size: 19
134474 ACAAATTGTC
*
134484 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAG
*
134503 CATGTATCGATACAAAGCAG
1 CATGTATCGATACAATG-AG
*
134523 CATGTATCGATACATCTGAG
1 CATGTATCGATACA-ATGAG
*
134543 CGTGTATCGATACA
1 CATGTATCGATACA
134557 TTCAAGGGTT
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
19 16 0.34
20 30 0.64
21 1 0.02
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (19 bp):
CATGTATCGATACAATGAG
Found at i:137935 original size:13 final size:13
Alignment explanation
Indices: 137917--137942 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
137907 CAATTTTTTG
137917 TGTATCGATACAT
1 TGTATCGATACAT
137930 TGTATCGATACAT
1 TGTATCGATACAT
137943 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:138814 original size:20 final size:20
Alignment explanation
Indices: 138789--138828 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
138779 ATATGCGAGA
138789 AAGACAATTAATGGAAATAT
1 AAGACAATTAATGGAAATAT
138809 AAGACAATTAATGGAAATAT
1 AAGACAATTAATGGAAATAT
138829 CATCATATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.55, C:0.05, G:0.15, T:0.25
Consensus pattern (20 bp):
AAGACAATTAATGGAAATAT
Found at i:140517 original size:13 final size:13
Alignment explanation
Indices: 140499--140537 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
140489 ATAATCACCC
*
140499 TGTATCGATACAG
1 TGTATCGATACAA
140512 TGTATCGATACAA
1 TGTATCGATACAA
140525 TGTATCGATACAA
1 TGTATCGATACAA
140538 GGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:142636 original size:15 final size:15
Alignment explanation
Indices: 142616--142646 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
142606 ATTTCGTTTG
*
142616 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
142631 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
142646 G
1 G
142647 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:146725 original size:13 final size:13
Alignment explanation
Indices: 146707--146732 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
146697 CAATTTTTTG
146707 TGTATCGATACAT
1 TGTATCGATACAT
146720 TGTATCGATACAT
1 TGTATCGATACAT
146733 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:147158 original size:21 final size:21
Alignment explanation
Indices: 147113--147158 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
147103 GATCCTAACA
*
147113 GATACATTCTAGAAATATATC
1 GATACATTCTAGAAAAATATC
147134 GATACATT-TAGACAAAAATAT-
1 GATACATTCTAG--AAAAATATC
147155 GATA
1 GATA
147159 TTTTTCATCC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
20 3 0.14
21 12 0.55
22 7 0.32
ACGTcount: A:0.48, C:0.11, G:0.11, T:0.30
Consensus pattern (21 bp):
GATACATTCTAGAAAAATATC
Found at i:155211 original size:15 final size:16
Alignment explanation
Indices: 155191--155220 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
155181 ACAATGCATA
155191 TAAATTAAAT-AACAT
1 TAAATTAAATCAACAT
155206 TAAATTAAATCAACA
1 TAAATTAAATCAACA
155221 AATAAAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.60, C:0.10, G:0.00, T:0.30
Consensus pattern (16 bp):
TAAATTAAATCAACAT
Found at i:155304 original size:17 final size:17
Alignment explanation
Indices: 155282--155323 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
155272 AAATTGTAGA
* *
155282 AAAGTAAGTTACGAATT
1 AAAGTAAATTACAAATT
155299 AAAGTAAATTACAAATT
1 AAAGTAAATTACAAATT
*
155316 AAAATAAA
1 AAAGTAAA
155324 CAAATTAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.60, C:0.05, G:0.10, T:0.26
Consensus pattern (17 bp):
AAAGTAAATTACAAATT
Found at i:155383 original size:31 final size:27
Alignment explanation
Indices: 155347--155405 Score: 95
Period size: 27 Copynumber: 2.3 Consensus size: 27
155337 AATTAAAAAG
155347 TAAAT-AAAATAA-TAAATAAAGCAAT
1 TAAATGAAAATAATTAAATAAAGCAAT
*
155372 TACATGAAAATAATTAAATAAAGCAAT
1 TAAATGAAAATAATTAAATAAAGCAAT
155399 TAAATGA
1 TAAATGA
155406 GAACTAAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 4 0.13
26 7 0.23
27 19 0.63
ACGTcount: A:0.63, C:0.05, G:0.07, T:0.25
Consensus pattern (27 bp):
TAAATGAAAATAATTAAATAAAGCAAT
Found at i:155401 original size:13 final size:13
Alignment explanation
Indices: 155359--155403 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
155349 AATAAAATAA
155359 TAAATAAAGCAAT
1 TAAATAAAGCAAT
* **
155372 TACATGAAAATAAT
1 TAAAT-AAAGCAAT
155386 TAAATAAAGCAAT
1 TAAATAAAGCAAT
155399 TAAAT
1 TAAAT
155404 GAGAACTAAA
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
13 15 0.60
14 10 0.40
ACGTcount: A:0.60, C:0.07, G:0.07, T:0.27
Consensus pattern (13 bp):
TAAATAAAGCAAT
Found at i:157551 original size:2 final size:2
Alignment explanation
Indices: 157544--157583 Score: 71
Period size: 2 Copynumber: 19.5 Consensus size: 2
157534 AATCTCTAAT
157544 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TGA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA T
157584 GTAAGTTAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 35 0.95
3 2 0.05
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:160074 original size:147 final size:147
Alignment explanation
Indices: 159792--160076 Score: 324
Period size: 147 Copynumber: 1.9 Consensus size: 147
159782 ACCTAAAAAG
* * * * * *
159792 TAAAAATTTTCCTATACTTTTTAAATTTATAATTTGACCCCTAAAAGATTTAAAATGCATGAAAA
1 TAAAAAATTTCCTAAACCTTTTAAATTTACAATTTGACCCCTAAAAGATTAAAAATGCAAGAAAA
* * ** *
159857 AGCATTAAAATAACCATTATACCCTAAATGGGTAATTATGTGCTGAAAATTACCTAAGTAGCCTT
66 AGCATGAAAATAACCATTATACCCTAAATGGGTAATTATGTGATGAAAACGACCTAAATAGCCTT
*
159922 TGAATGCATGGTTTTGT
131 AGAATGCATGGTTTTGT
* * *
159939 TAAAAAATTT-CTAAACCTTTTAAATTTGCAATTTGACCCTTAAAAGGTTAAAAAAATGCAAG-A
1 TAAAAAATTTCCTAAACCTTTTAAATTTACAATTTGACCCCTAAAAGATT--AAAAATGCAAGAA
* * * * * * *
160002 AGAGCATGAAAATGACCCTTATACCCTGAATGGGTAATTATGTGATGGAAACGATCTAAATTG-C
64 AAAGCATGAAAATAACCATTATACCCTAAATGGGTAATTATGTGATGAAAACGACCTAAATAGCC
160066 TCTAGAATGCA
129 T-TAGAATGCA
160077 ATGCTTTGCT
Statistics
Matches: 113, Mismatches: 22, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
146 35 0.31
147 69 0.61
148 9 0.08
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (147 bp):
TAAAAAATTTCCTAAACCTTTTAAATTTACAATTTGACCCCTAAAAGATTAAAAATGCAAGAAAA
AGCATGAAAATAACCATTATACCCTAAATGGGTAATTATGTGATGAAAACGACCTAAATAGCCTT
AGAATGCATGGTTTTGT
Found at i:160090 original size:147 final size:147
Alignment explanation
Indices: 159792--160115 Score: 318
Period size: 147 Copynumber: 2.2 Consensus size: 147
159782 ACCTAAAAAG
* * * * * *
159792 TAAAAATTTTCCTATACTTTTTAAATTTATAATTTGACCCCTAAAAGATTTAAAATGCATGAAAA
1 TAAAAAATTTCCTAAACCTTTTAAATTTACAATTTGACCCCTAAAAGATTAAAAATGCAAGAAAA
* * ** *
159857 AGCATTAAAATAACCATTATACCCTAAATGGGTAATTATGTGCTGAAAATTACCTAAGTAGCCTT
66 AGCATGAAAATAACCATTATACCCTAAATGGGTAATTATGTGATGAAAACGACCTAAATAGCCTT
* * *
159922 TGAATGCATGGTTTTGT
131 AGAATGCATGGCTTTGC
* * *
159939 TAAAAAATTT-CTAAACCTTTTAAATTTGCAATTTGACCCTTAAAAGGTTAAAAAAATGCAAG-A
1 TAAAAAATTTCCTAAACCTTTTAAATTTACAATTTGACCCCTAAAAGATT--AAAAATGCAAGAA
* * * * * * *
160002 AGAGCATGAAAATGACCCTTATACCCTGAATGGGTAATTATGTGATGGAAACGATCTAAATTG-C
64 AAAGCATGAAAATAACCATTATACCCTAAATGGGTAATTATGTGATGAAAACGACCTAAATAGCC
160066 TCTAGAATGCAAT-GCTTTGC
129 T-TAGAATGC-ATGGCTTTGC
** * *
160086 T-AAAAGGTGCCTAAA-CTTTTAAAATTACAA
1 TAAAAAATTTCCTAAACCTTTTAAATTTACAA
160116 AAAAGTCCCT
Statistics
Matches: 143, Mismatches: 29, Indels: 11
0.78 0.16 0.06
Matches are distributed among these distances:
146 53 0.37
147 79 0.55
148 11 0.08
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (147 bp):
TAAAAAATTTCCTAAACCTTTTAAATTTACAATTTGACCCCTAAAAGATTAAAAATGCAAGAAAA
AGCATGAAAATAACCATTATACCCTAAATGGGTAATTATGTGATGAAAACGACCTAAATAGCCTT
AGAATGCATGGCTTTGC
Found at i:162467 original size:34 final size:33
Alignment explanation
Indices: 162422--162486 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
162412 TTTCTACAAT
*
162422 TTGTATCGATACACACAGTAAATGTATCGATATA
1 TTGTATCGATACACAC-CTAAATGTATCGATATA
* **
162456 TTGTATTGATACATGCCTAAATGTATCGATA
1 TTGTATCGATACACACCTAAATGTATCGATA
162487 CAAAACTACC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
33 14 0.52
34 13 0.48
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.35
Consensus pattern (33 bp):
TTGTATCGATACACACCTAAATGTATCGATATA
Found at i:162640 original size:51 final size:51
Alignment explanation
Indices: 162559--162688 Score: 206
Period size: 51 Copynumber: 2.5 Consensus size: 51
162549 TTACTGTTTA
* *
162559 TATCAATACATTCTTCATTGTATCGATACATTCTGGGTTTTAACCTAGATG
1 TATCGATACATTTTTCATTGTATCGATACATTCTGGGTTTTAACCTAGATG
* *
162610 TATCGATACATTTTTCATTGTATGGATACATTTTGGGTTTTAACCTAGATG
1 TATCGATACATTTTTCATTGTATCGATACATTCTGGGTTTTAACCTAGATG
* *
162661 TATCGATACATTTCTCAATGTATCGATA
1 TATCGATACATTTTTCATTGTATCGATA
162689 TATTAAGGCA
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 72 1.00
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.42
Consensus pattern (51 bp):
TATCGATACATTTTTCATTGTATCGATACATTCTGGGTTTTAACCTAGATG
Found at i:164194 original size:108 final size:107
Alignment explanation
Indices: 163966--164365 Score: 444
Period size: 108 Copynumber: 3.7 Consensus size: 107
163956 TTGTATGCCT
** * * * *
163966 GCTTTACGACTCTAGACGATGATTTATTTTGGGGCCAATCTCTTAGTGACT-GAATATTACGTAA
1 GCTTTACGACTCTAGACGATGACCTATTTCGGGGCCAATCTTTTGGTG-CTCGAAT-TTACATAA
* * * * * * *
164030 GTAATGCAGAAATAATTTATCCTTTGTAAAGGGCATTCGTACGTC
64 TTAATGCAAAAATAAGTTGTCC-TAGTAGAGGGCGTTCGTACGTC
* * ** *
164075 GCTTTATGACTCTAGAGGATGACCTATTTCAAGGCCAATCTTTTGGTGCTCGAATTTACATAGTT
1 GCTTTACGACTCTAGACGATGACCTATTTCGGGGCCAATCTTTTGGTGCTCGAATTTACATAATT
* *
164140 AATGCAAAAATAAGTTGTCCTAGGTAGAGGGCGTTTGTACGTA
66 AATGCAAAAATAAGTTGTCCTA-GTAGAGGGCGTTCGTACGTC
* * * *
164183 GCTTTACGACTCTAGACGATGACCTGTTTCGGGGCTAATCTTTTGGTACTC-AGATTTACGTAAT
1 GCTTTACGACTCTAGACGATGACCTATTTCGGGGCCAATCTTTTGGTGCTCGA-ATTTACATAAT
* * * *
164247 TAATGCAAAAATACGTTGTACTATTAGAGGGCGTTCGTACGCC
65 TAATGCAAAAATAAGTTGTCCTAGTAGAGGGCGTTCGTACGTC
* * *
164290 GCCTTATGACTCTAGACGATGACCTATTTCGGGGCCAATCTTTTGGTGCCCGAATTTACATAATT
1 GCTTTACGACTCTAGACGATGACCTATTTCGGGGCCAATCTTTTGGTGCTCGAATTTACATAATT
**
164355 TGTGCAAAAAT
66 AATGCAAAAAT
164366 GAATTATAAA
Statistics
Matches: 243, Mismatches: 44, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
107 83 0.34
108 117 0.48
109 43 0.18
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (107 bp):
GCTTTACGACTCTAGACGATGACCTATTTCGGGGCCAATCTTTTGGTGCTCGAATTTACATAATT
AATGCAAAAATAAGTTGTCCTAGTAGAGGGCGTTCGTACGTC
Found at i:164286 original size:215 final size:217
Alignment explanation
Indices: 163966--164365 Score: 536
Period size: 215 Copynumber: 1.9 Consensus size: 217
163956 TTGTATGCCT
** * *
163966 GCTTTACGACTCTAGACGATGATTTATTTTGGGGCCAATCTCTTAGTGACTGAATATTACGTAAG
1 GCTTTACGACTCTAGACGATGACCTATTTCGGGGCCAATCTCTTAGTGACTCAATATTACGTAAG
* * * * * * *
164031 TAATGCAGAAATAATTTATCCTTTGTAAAGGGCATTCGTACGTCGCTTTATGACTCTAGAGGATG
66 TAATGCAAAAATAAGTTATACTATGTAAAGGGCATTCGTACGCCGCCTTATGACTCTAGACGATG
* *
164096 ACCTATTTCAAGGCCAATCTTTTGGTGCTCGAATTTACATAGTTAATGCAAAAATAAGTTGTCCT
131 ACCTATTTCAAGGCCAATCTTTTGGTGCCCGAATTTACATAATTAATGCAAAAATAAGTTGTCCT
164161 AGGTAGAGGGCGTTTGTACGTA
196 AGGTAGAGGGCGTTTGTACGTA
* * * *
164183 GCTTTACGACTCTAGACGATGACCTGTTTCGGGGCTAATCTTTTGGT-ACTCAGAT-TTACGTAA
1 GCTTTACGACTCTAGACGATGACCTATTTCGGGGCCAATCTCTTAGTGACTCA-ATATTACGTAA
* * * * *
164246 TTAATGCAAAAATACGTTGTACTAT-TAGAGGGCGTTCGTACGCCGCCTTATGACTCTAGACGAT
65 GTAATGCAAAAATAAGTTATACTATGTAAAGGGCATTCGTACGCCGCCTTATGACTCTAGACGAT
** **
164310 GACCTATTTCGGGGCCAATCTTTTGGTGCCCGAATTTACATAATTTGTGCAAAAAT
130 GACCTATTTCAAGGCCAATCTTTTGGTGCCCGAATTTACATAATTAATGCAAAAAT
164366 GAATTATAAA
Statistics
Matches: 156, Mismatches: 26, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
215 84 0.54
216 30 0.19
217 42 0.27
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (217 bp):
GCTTTACGACTCTAGACGATGACCTATTTCGGGGCCAATCTCTTAGTGACTCAATATTACGTAAG
TAATGCAAAAATAAGTTATACTATGTAAAGGGCATTCGTACGCCGCCTTATGACTCTAGACGATG
ACCTATTTCAAGGCCAATCTTTTGGTGCCCGAATTTACATAATTAATGCAAAAATAAGTTGTCCT
AGGTAGAGGGCGTTTGTACGTA
Found at i:165987 original size:19 final size:20
Alignment explanation
Indices: 165965--166003 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
165955 GGTTTCATTG
165965 ATTTTTTGATTTTT-ATTTT
1 ATTTTTTGATTTTTGATTTT
*
165984 ATTTTTTTATTTTTGATTTT
1 ATTTTTTGATTTTTGATTTT
166004 TTTATTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.15, C:0.00, G:0.05, T:0.79
Consensus pattern (20 bp):
ATTTTTTGATTTTTGATTTT
Found at i:166004 original size:15 final size:15
Alignment explanation
Indices: 165974--166013 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
165964 GATTTTTTGA
165974 TTTTTA-TTTT-ATT
1 TTTTTATTTTTGATT
165987 TTTTTATTTTTGATT
1 TTTTTATTTTTGATT
166002 TTTTTATTTTTG
1 TTTTTATTTTTG
166014 TATTATCAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
13 6 0.24
14 4 0.16
15 15 0.60
ACGTcount: A:0.12, C:0.00, G:0.05, T:0.82
Consensus pattern (15 bp):
TTTTTATTTTTGATT
Found at i:166004 original size:33 final size:33
Alignment explanation
Indices: 165918--166004 Score: 86
Period size: 33 Copynumber: 2.5 Consensus size: 33
165908 GAATTTCTAA
*
165918 TTTTGATTTTTGATGGTTTTGGATTTTTATTTTTT
1 TTTTTATTTTTGAT--TTTTGGATTTTTATTTTTT
* ** *
165953 TTGGTT-TCATTGATTTTTTGATTTTTATTTTATT
1 TT-TTTATTTTTGATTTTTGGATTTTTATTTT-TT
165987 TTTTTATTTTTGATTTTT
1 TTTTTATTTTTGATTTTT
166005 TTATTTTTGT
Statistics
Matches: 41, Mismatches: 8, Indels: 7
0.73 0.14 0.12
Matches are distributed among these distances:
33 18 0.44
34 14 0.34
35 8 0.20
36 1 0.02
ACGTcount: A:0.13, C:0.01, G:0.13, T:0.74
Consensus pattern (33 bp):
TTTTTATTTTTGATTTTTGGATTTTTATTTTTT
Done.